Gferi_RS05920 dc567271a888a27b43198f405f795022 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 42 58 2.8E-15 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS05920 dc567271a888a27b43198f405f795022 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 271 289 2.8E-15 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS05920 dc567271a888a27b43198f405f795022 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 64 80 2.8E-15 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS05920 dc567271a888a27b43198f405f795022 385 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 83 101 2.8E-15 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS05920 dc567271a888a27b43198f405f795022 385 SUPERFAMILY SSF53822 42 384 1.45E-95 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS05920 dc567271a888a27b43198f405f795022 385 Gene3D G3DSA:3.40.50.2300 302 368 5.1E-57 T 11-11-2016 Gferi_RS05920 dc567271a888a27b43198f405f795022 385 Gene3D G3DSA:3.40.50.2300 37 164 5.1E-57 T 11-11-2016 Gferi_RS05920 dc567271a888a27b43198f405f795022 385 Pfam PF13458 Periplasmic binding protein 41 380 4.1E-76 T 11-11-2016 IPR028081 Leucine-binding protein domain Gferi_RS05920 dc567271a888a27b43198f405f795022 385 Gene3D G3DSA:3.40.50.2300 177 272 5.7E-4 T 11-11-2016 Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 SUPERFAMILY SSF53187 299 389 2.45E-71 T 11-11-2016 Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 SUPERFAMILY SSF53187 2 198 2.45E-71 T 11-11-2016 Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 Gene3D G3DSA:3.30.70.360 182 298 9.3E-40 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 Pfam PF07687 Peptidase dimerisation domain 187 280 6.1E-11 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 SUPERFAMILY SSF55031 184 292 1.01E-30 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 Pfam PF01546 Peptidase family M20/M25/M40 72 379 1.5E-28 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 Gene3D G3DSA:3.40.630.10 3 179 3.6E-78 T 11-11-2016 Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 Gene3D G3DSA:3.40.630.10 299 389 3.6E-78 T 11-11-2016 Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 PIRSF PIRSF005962 1 390 3.3E-105 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS16065 24da4bcb7e9292f693c5de03a6081e09 391 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 375 6.7E-89 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS20170 ff5bc472a3a41f8adaffa027bdcd06f0 91 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 8 82 2.3E-16 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Gferi_RS20170 ff5bc472a3a41f8adaffa027bdcd06f0 91 SUPERFAMILY SSF53146 1 82 1.06E-20 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Gferi_RS20170 ff5bc472a3a41f8adaffa027bdcd06f0 91 Gene3D G3DSA:3.30.420.130 1 82 1.7E-22 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Gferi_RS18275 b74d434b09ca08fe0dab58d8eb153929 130 Pfam PF13673 Acetyltransferase (GNAT) domain 32 119 4.8E-12 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS18275 b74d434b09ca08fe0dab58d8eb153929 130 SUPERFAMILY SSF55729 9 120 7.15E-20 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS18275 b74d434b09ca08fe0dab58d8eb153929 130 Gene3D G3DSA:3.40.630.30 6 123 9.2E-27 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 SUPERFAMILY SSF52540 155 400 1.54E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 Gene3D G3DSA:1.10.8.60 328 404 4.2E-22 T 11-11-2016 Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 180 193 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 SMART SM00382 176 326 1.3E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 SUPERFAMILY SSF46689 368 464 5.02E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 8.3E-5 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 8.3E-5 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 Pfam PF00158 Sigma-54 interaction domain 156 321 8.1E-62 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 Gene3D G3DSA:3.40.50.300 154 327 2.3E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 Pfam PF02954 Bacterial regulatory protein, Fis family 424 461 2.0E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 241 256 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 368 377 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS06535 72a47c93766185bfd93c8fee27dacbf0 466 Gene3D G3DSA:1.10.10.60 407 464 1.6E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS00400 568af2620d921632fe35a9e8fb5e1eaa 359 Pfam PF11104 Type IV pilus assembly protein PilM; 16 335 9.2E-43 T 11-11-2016 IPR005883 Type IV pilus assembly protein PilM Gferi_RS00400 568af2620d921632fe35a9e8fb5e1eaa 359 SMART SM00842 13 180 4.7E-4 T 11-11-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 Gferi_RS00400 568af2620d921632fe35a9e8fb5e1eaa 359 SUPERFAMILY SSF53067 193 326 5.26E-17 T 11-11-2016 Gferi_RS00400 568af2620d921632fe35a9e8fb5e1eaa 359 Gene3D G3DSA:3.30.420.40 8 95 1.6E-5 T 11-11-2016 Gferi_RS00400 568af2620d921632fe35a9e8fb5e1eaa 359 PIRSF PIRSF019169 1 359 1.0E-87 T 11-11-2016 IPR005883 Type IV pilus assembly protein PilM Gferi_RS00400 568af2620d921632fe35a9e8fb5e1eaa 359 SUPERFAMILY SSF53067 68 170 9.07E-12 T 11-11-2016 Gferi_RS00400 568af2620d921632fe35a9e8fb5e1eaa 359 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 13 338 7.3E-46 T 11-11-2016 IPR005883 Type IV pilus assembly protein PilM Gferi_RS00400 568af2620d921632fe35a9e8fb5e1eaa 359 Gene3D G3DSA:3.30.420.40 198 327 1.6E-18 T 11-11-2016 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 SUPERFAMILY SSF64586 408 480 6.67E-22 T 11-11-2016 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 SUPERFAMILY SSF55681 18 280 1.1E-79 T 11-11-2016 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 TIGRFAM TIGR00408 proS_fam_I: proline--tRNA ligase 15 480 4.1E-183 T 11-11-2016 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 Pfam PF03129 Anticodon binding domain 294 386 1.1E-20 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 Gene3D G3DSA:3.30.110.30 407 479 1.8E-28 T 11-11-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 Hamap MF_01571 Proline--tRNA ligase [proS]. 12 480 45.401 T 11-11-2016 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 107 275 6.4E-20 T 11-11-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 SUPERFAMILY SSF52954 283 405 1.96E-35 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 Gene3D G3DSA:3.40.50.800 288 403 1.1E-43 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 PRINTS PR01046 Prolyl-tRNA synthetase signature 70 88 8.7E-11 T 11-11-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 PRINTS PR01046 Prolyl-tRNA synthetase signature 111 122 8.7E-11 T 11-11-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 PRINTS PR01046 Prolyl-tRNA synthetase signature 150 161 8.7E-11 T 11-11-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 PRINTS PR01046 Prolyl-tRNA synthetase signature 141 149 8.7E-11 T 11-11-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 Gene3D G3DSA:3.30.930.10 9 287 5.3E-115 T 11-11-2016 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 SMART SM00946 413 480 4.8E-27 T 11-11-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Gferi_RS17250 532ea0867d4c0170f3544aab5042110b 480 Pfam PF09180 Prolyl-tRNA synthetase, C-terminal 414 480 5.0E-22 T 11-11-2016 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Gferi_RS19740 ca78a0bb345d65d3fd5ba5f39149fca8 520 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 292 457 1.1E-22 T 11-11-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Gferi_RS19740 ca78a0bb345d65d3fd5ba5f39149fca8 520 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 2.4E-48 T 11-11-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Gferi_RS19740 ca78a0bb345d65d3fd5ba5f39149fca8 520 PIRSF PIRSF000538 2 509 1.1E-116 T 11-11-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Gferi_RS19740 ca78a0bb345d65d3fd5ba5f39149fca8 520 SUPERFAMILY SSF53067 3 253 9.46E-57 T 11-11-2016 Gferi_RS19740 ca78a0bb345d65d3fd5ba5f39149fca8 520 SUPERFAMILY SSF53067 256 499 8.81E-43 T 11-11-2016 Gferi_RS19740 ca78a0bb345d65d3fd5ba5f39149fca8 520 Gene3D G3DSA:3.30.420.40 1 250 2.6E-57 T 11-11-2016 Gferi_RS19740 ca78a0bb345d65d3fd5ba5f39149fca8 520 Gene3D G3DSA:3.30.420.40 256 505 1.2E-40 T 11-11-2016 Gferi_RS24575 aa352a3c2f714b7d1f9dc16c6c75ea85 289 Pfam PF12801 4Fe-4S binding domain 127 159 0.17 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24575 aa352a3c2f714b7d1f9dc16c6c75ea85 289 Pfam PF12801 4Fe-4S binding domain 181 217 0.0045 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24575 aa352a3c2f714b7d1f9dc16c6c75ea85 289 Pfam PF12801 4Fe-4S binding domain 52 63 33.0 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24575 aa352a3c2f714b7d1f9dc16c6c75ea85 289 Pfam PF12801 4Fe-4S binding domain 72 112 1.1E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24575 aa352a3c2f714b7d1f9dc16c6c75ea85 289 Gene3D G3DSA:3.30.70.20 196 272 1.7E-11 T 11-11-2016 Gferi_RS24575 aa352a3c2f714b7d1f9dc16c6c75ea85 289 SUPERFAMILY SSF54862 76 99 2.26E-18 T 11-11-2016 Gferi_RS24575 aa352a3c2f714b7d1f9dc16c6c75ea85 289 SUPERFAMILY SSF54862 147 273 2.26E-18 T 11-11-2016 Gferi_RS09295 9fa43ac70b9f3f62c748496231abcfa4 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 288 6.0E-37 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS08230 fa2f7b5cbba587eaef274059868a7fa4 123 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 101 3.2E-18 T 11-11-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 Gferi_RS08230 fa2f7b5cbba587eaef274059868a7fa4 123 Gene3D G3DSA:3.90.470.20 1 121 4.4E-27 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 Gferi_RS08230 fa2f7b5cbba587eaef274059868a7fa4 123 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 2 123 16.736 T 11-11-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 Gferi_RS08230 fa2f7b5cbba587eaef274059868a7fa4 123 SUPERFAMILY SSF56214 2 121 2.22E-20 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 Gferi_RS08230 fa2f7b5cbba587eaef274059868a7fa4 123 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 7 89 2.0E-8 T 11-11-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 Gferi_RS08230 fa2f7b5cbba587eaef274059868a7fa4 123 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 122 8.3E-21 T 11-11-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 Gferi_RS08230 fa2f7b5cbba587eaef274059868a7fa4 123 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 3 96 5.2E-17 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 SMART SM00388 208 275 6.0E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 428 1.6E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 SUPERFAMILY SSF55874 264 428 1.2E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 SUPERFAMILY SSF47384 195 273 2.94E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 Gene3D G3DSA:1.10.287.130 202 261 5.0E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 371 2.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 410 2.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 385 2.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 SMART SM00387 320 430 6.2E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 Gene3D G3DSA:3.30.565.10 262 428 2.0E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22105 8c7872eea915e82f21c4014885fea29e 430 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 273 2.7E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16520 c0d4697a43f672ef100ccbc788736282 230 Gene3D G3DSA:1.10.260.40 4 84 7.4E-14 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS16520 c0d4697a43f672ef100ccbc788736282 230 SMART SM00530 7 62 5.0E-12 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS16520 c0d4697a43f672ef100ccbc788736282 230 SUPERFAMILY SSF47413 2 66 5.63E-14 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS16520 c0d4697a43f672ef100ccbc788736282 230 Pfam PF01381 Helix-turn-helix 8 61 2.8E-11 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS16520 c0d4697a43f672ef100ccbc788736282 230 Gene3D G3DSA:2.10.109.10 131 222 5.6E-5 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS16520 c0d4697a43f672ef100ccbc788736282 230 SUPERFAMILY SSF51306 124 223 6.63E-8 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C Gferi_RS06470 3d36a6860616ee231069d547accf0f88 77 TIGRFAM TIGR00412 redox_disulf_2: redox-active disulfide protein 2 1 76 1.0E-24 T 11-11-2016 IPR005243 Redox-active disulphide protein 2 Gferi_RS06470 3d36a6860616ee231069d547accf0f88 77 PIRSF PIRSF037031 1 77 1.5E-29 T 11-11-2016 IPR005243 Redox-active disulphide protein 2 Gferi_RS06470 3d36a6860616ee231069d547accf0f88 77 SUPERFAMILY SSF52833 1 75 4.48E-16 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS06470 3d36a6860616ee231069d547accf0f88 77 Gene3D G3DSA:3.40.30.10 2 75 1.1E-27 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS06470 3d36a6860616ee231069d547accf0f88 77 Pfam PF13192 Thioredoxin domain 1 75 1.4E-26 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20905 a9a526934aee86b81d18b96ae1f562c6 445 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 103 416 1.6E-117 T 11-11-2016 IPR010119 Gluconeogenesis factor Gferi_RS20905 a9a526934aee86b81d18b96ae1f562c6 445 Gene3D G3DSA:3.40.50.10680 173 418 1.4E-55 T 11-11-2016 Gferi_RS20905 a9a526934aee86b81d18b96ae1f562c6 445 SUPERFAMILY SSF142338 99 414 1.44E-95 T 11-11-2016 Gferi_RS20905 a9a526934aee86b81d18b96ae1f562c6 445 Hamap MF_00973 Gluconeogenesis factor. 99 419 34.63 T 11-11-2016 IPR010119 Gluconeogenesis factor Gferi_RS20905 a9a526934aee86b81d18b96ae1f562c6 445 Pfam PF01933 Uncharacterised protein family UPF0052 103 393 2.8E-102 T 11-11-2016 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 Gferi_RS20120 3f5c8d01840162e18aa9a8533c79fe60 54 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 52 18.881 T 11-11-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Gferi_RS20120 3f5c8d01840162e18aa9a8533c79fe60 54 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 5.5E-8 T 11-11-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 Gferi_RS20120 3f5c8d01840162e18aa9a8533c79fe60 54 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 5.5E-8 T 11-11-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 Gferi_RS20120 3f5c8d01840162e18aa9a8533c79fe60 54 Pfam PF02416 mttA/Hcf106 family 4 52 2.5E-20 T 11-11-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 Gferi_RS20120 3f5c8d01840162e18aa9a8533c79fe60 54 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 5.1E-21 T 11-11-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 Gferi_RS19885 a59daf9dc45a3f7026b72b1196b08f60 107 Gene3D G3DSA:3.40.30.30 3 106 2.6E-5 T 11-11-2016 IPR009190 Protein of unknown function DUF1462 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 Gene3D G3DSA:3.90.190.20 321 461 1.1E-41 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 SUPERFAMILY SSF53244 321 457 4.21E-32 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 3 460 32.73 T 11-11-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 SUPERFAMILY SSF63418 2 104 6.54E-22 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 SUPERFAMILY SSF53623 107 319 2.49E-53 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 Pfam PF08245 Mur ligase middle domain 112 299 2.8E-49 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 Gene3D G3DSA:3.40.1390.10 7 95 9.3E-24 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 Pfam PF01225 Mur ligase family, catalytic domain 26 101 3.5E-13 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 Gene3D G3DSA:3.40.1190.10 96 318 1.9E-68 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 457 3.1E-130 T 11-11-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS01970 08f608298fe0f0f2584eb6358eb30b89 463 Pfam PF02875 Mur ligase family, glutamate ligase domain 322 402 3.0E-13 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS06325 2ab8b788614bb7e3f1824b21747f397a 448 Pfam PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit 64 443 3.4E-83 T 11-11-2016 IPR016041 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel Gferi_RS06325 2ab8b788614bb7e3f1824b21747f397a 448 PIRSF PIRSF000376 1 448 1.3E-127 T 11-11-2016 IPR016218 Acetyl-CoA decarbonylase/synthase complex, gamma subunit GO:0005506|GO:0008168|GO:0046356 Gferi_RS06325 2ab8b788614bb7e3f1824b21747f397a 448 Pfam PF04060 Putative Fe-S cluster 13 43 1.0E-12 T 11-11-2016 IPR007202 4Fe-4S domain GO:0051536 Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 SUPERFAMILY SSF53187 301 392 1.61E-81 T 11-11-2016 Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 SUPERFAMILY SSF53187 2 197 1.61E-81 T 11-11-2016 Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 SUPERFAMILY SSF55031 181 301 5.53E-23 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 377 1.3E-107 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 Pfam PF07687 Peptidase dimerisation domain 186 276 9.2E-11 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 Gene3D G3DSA:3.40.630.10 301 391 1.8E-96 T 11-11-2016 Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 Gene3D G3DSA:3.40.630.10 2 178 1.8E-96 T 11-11-2016 Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 Pfam PF01546 Peptidase family M20/M25/M40 72 387 3.5E-34 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 PIRSF PIRSF005962 1 392 5.5E-127 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS03400 4ef18084f94ef81c50ad479e20540e10 392 Gene3D G3DSA:3.30.70.360 181 300 2.1E-32 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS07295 89dbc7fb29572160e7443e2aa88b477b 348 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 65 331 5.6E-70 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS07295 89dbc7fb29572160e7443e2aa88b477b 348 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 55 304 7.6E-54 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS07295 89dbc7fb29572160e7443e2aa88b477b 348 SUPERFAMILY SSF53850 176 318 3.57E-5 T 11-11-2016 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 SUPERFAMILY SSF142019 99 338 7.59E-88 T 11-11-2016 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 SUPERFAMILY SSF52833 3 83 2.91E-10 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 SUPERFAMILY SSF140490 423 524 4.45E-38 T 11-11-2016 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 SUPERFAMILY SSF54862 522 582 6.28E-12 T 11-11-2016 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 Gene3D G3DSA:3.40.30.10 5 88 1.1E-13 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 145 317 3.2E-48 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 SMART SM00928 427 472 7.8E-22 T 11-11-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 Pfam PF10531 SLBB domain 341 389 1.1E-8 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 SUPERFAMILY SSF142984 339 422 3.01E-25 T 11-11-2016 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 Pfam PF12838 4Fe-4S dicluster domain 536 579 5.4E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 Gene3D G3DSA:3.30.70.20 531 583 1.5E-12 T 11-11-2016 Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 536 547 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS19915 60799380a01f826a1f72b286adf2e54d 584 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 428 512 9.6E-33 T 11-11-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS17530 2201c84c56a22ceaaa68f68a6b734ffe 133 ProSitePatterns PS00054 Ribosomal protein S11 signature. 101 123 - T 11-11-2016 IPR018102 Ribosomal S11, conserved site Gferi_RS17530 2201c84c56a22ceaaa68f68a6b734ffe 133 Gene3D G3DSA:3.30.420.80 11 133 8.4E-57 T 11-11-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17530 2201c84c56a22ceaaa68f68a6b734ffe 133 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 4 133 34.624 T 11-11-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17530 2201c84c56a22ceaaa68f68a6b734ffe 133 PIRSF PIRSF002131 2 133 3.2E-54 T 11-11-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17530 2201c84c56a22ceaaa68f68a6b734ffe 133 Pfam PF00411 Ribosomal protein S11 23 132 1.1E-51 T 11-11-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17530 2201c84c56a22ceaaa68f68a6b734ffe 133 SUPERFAMILY SSF53137 18 133 1.7E-50 T 11-11-2016 Gferi_RS17530 2201c84c56a22ceaaa68f68a6b734ffe 133 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 14 130 4.5E-59 T 11-11-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 Pfam PF00476 DNA polymerase family A 233 501 2.1E-20 T 11-11-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 SUPERFAMILY SSF53098 27 185 9.23E-6 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 SUPERFAMILY SSF56672 373 644 1.67E-82 T 11-11-2016 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 SUPERFAMILY SSF56672 194 344 1.67E-82 T 11-11-2016 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 SMART SM00482 370 612 1.4E-18 T 11-11-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 Gene3D G3DSA:1.10.150.20 393 546 7.1E-26 T 11-11-2016 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 PRINTS PR00868 DNA-polymerase family A (pol I) signature 595 608 1.4E-7 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 PRINTS PR00868 DNA-polymerase family A (pol I) signature 384 407 1.4E-7 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 PRINTS PR00868 DNA-polymerase family A (pol I) signature 414 427 1.4E-7 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 Gene3D G3DSA:3.30.70.370 320 392 5.5E-10 T 11-11-2016 Gferi_RS23695 16e69c8c3824339f39be8a5f91717b9a 646 Gene3D G3DSA:3.30.70.370 573 622 5.5E-10 T 11-11-2016 Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 Pfam PF01743 Poly A polymerase head domain 19 137 2.0E-20 T 11-11-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 Gene3D G3DSA:1.10.3090.10 137 244 1.4E-39 T 11-11-2016 Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 Gene3D G3DSA:1.10.3090.10 276 389 1.4E-39 T 11-11-2016 Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 SUPERFAMILY SSF81301 14 134 8.01E-26 T 11-11-2016 Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 Pfam PF01966 HD domain 240 385 1.2E-8 T 11-11-2016 IPR006674 HD domain Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 TIGRFAM TIGR00277 HDIG: HDIG domain 280 325 5.7E-8 T 11-11-2016 IPR006675 HDIG domain Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 SMART SM00471 234 397 1.6E-5 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 SUPERFAMILY SSF81891 136 245 3.92E-41 T 11-11-2016 Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 SUPERFAMILY SSF81891 284 471 3.92E-41 T 11-11-2016 Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 162 224 1.2E-8 T 11-11-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Gferi_RS12155 adae8bb125fb732f4dc2c029ff3295a6 478 Gene3D G3DSA:3.30.460.10 12 136 5.8E-27 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 Gene3D G3DSA:3.30.230.10 294 455 7.0E-29 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 SUPERFAMILY SSF52540 66 284 5.22E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 Pfam PF13541 Subunit ChlI of Mg-chelatase 343 429 1.0E-12 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 SMART SM00382 88 242 2.4E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 Gene3D G3DSA:3.40.50.300 55 274 1.1E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 451 2.1E-176 T 11-11-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 Pfam PF13481 AAA domain 62 220 2.5E-18 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 PRINTS PR01874 DNA repair protein radA signature 122 139 1.2E-84 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 PRINTS PR01874 DNA repair protein radA signature 320 343 1.2E-84 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 PRINTS PR01874 DNA repair protein radA signature 246 272 1.2E-84 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 PRINTS PR01874 DNA repair protein radA signature 11 35 1.2E-84 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 PRINTS PR01874 DNA repair protein radA signature 80 108 1.2E-84 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 PRINTS PR01874 DNA repair protein radA signature 172 196 1.2E-84 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 PRINTS PR01874 DNA repair protein radA signature 211 239 1.2E-84 T 11-11-2016 Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 SUPERFAMILY SSF54211 301 454 7.59E-38 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 SUPERFAMILY SSF54211 253 267 7.59E-38 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS17140 5d756305813b7d556aa71f442cc2e67e 462 Hamap MF_01498 DNA repair protein RadA [radA]. 22 455 41.806 T 11-11-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Gferi_RS23705 4a8d648e07c0b090237c31449a7d0d2b 520 Pfam PF13408 Recombinase zinc beta ribbon domain 314 371 1.3E-10 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS23705 4a8d648e07c0b090237c31449a7d0d2b 520 Gene3D G3DSA:3.40.50.1390 21 152 7.6E-31 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23705 4a8d648e07c0b090237c31449a7d0d2b 520 Pfam PF07508 Recombinase 190 295 1.0E-25 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS23705 4a8d648e07c0b090237c31449a7d0d2b 520 SUPERFAMILY SSF53041 21 171 1.44E-35 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23705 4a8d648e07c0b090237c31449a7d0d2b 520 Pfam PF00239 Resolvase, N terminal domain 22 170 4.9E-32 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23705 4a8d648e07c0b090237c31449a7d0d2b 520 SMART SM00857 22 171 1.4E-49 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 SUPERFAMILY SSF46689 296 345 2.02E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 Gene3D G3DSA:1.10.10.60 296 344 2.5E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 311 326 3.5E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 326 342 3.5E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 SUPERFAMILY SSF46689 245 293 5.91E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 Pfam PF00072 Response regulator receiver domain 5 117 6.5E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 296 338 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 Gene3D G3DSA:3.40.50.2300 4 126 6.9E-34 T 11-11-2016 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 SMART SM00448 3 117 6.1E-33 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 Pfam PF12833 Helix-turn-helix domain 265 343 6.9E-24 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 SMART SM00342 259 342 1.2E-36 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 SUPERFAMILY SSF52172 4 127 1.15E-34 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS26010 7b53ff152d85aea735a64fbca14ae088 348 Gene3D G3DSA:1.10.10.60 237 295 8.7E-20 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 PRINTS PR00996 Glutamate methyltransferase family signature 129 145 2.6E-36 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 PRINTS PR00996 Glutamate methyltransferase family signature 23 36 2.6E-36 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 PRINTS PR00996 Glutamate methyltransferase family signature 97 117 2.6E-36 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 PRINTS PR00996 Glutamate methyltransferase family signature 195 209 2.6E-36 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 PRINTS PR00996 Glutamate methyltransferase family signature 60 72 2.6E-36 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 PRINTS PR00996 Glutamate methyltransferase family signature 214 237 2.6E-36 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 SUPERFAMILY SSF47757 3 66 7.85E-12 T 11-11-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 Gene3D G3DSA:1.10.155.10 3 65 3.9E-9 T 11-11-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 Gene3D G3DSA:3.40.50.150 66 250 4.0E-63 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 Pfam PF01739 CheR methyltransferase, SAM binding domain 67 238 8.5E-58 T 11-11-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 Pfam PF03705 CheR methyltransferase, all-alpha domain 3 52 1.4E-15 T 11-11-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 SUPERFAMILY SSF53335 67 243 5.17E-48 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS00015 65e82f18e480619905d018410b9c4f76 257 SMART SM00138 1 254 1.4E-87 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS24645 3fcb17852f3983d521e1ea92c3484ecb 187 SUPERFAMILY SSF88946 19 111 8.63E-19 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24645 3fcb17852f3983d521e1ea92c3484ecb 187 Gene3D G3DSA:1.10.1740.10 20 118 3.3E-20 T 11-11-2016 Gferi_RS24645 3fcb17852f3983d521e1ea92c3484ecb 187 Pfam PF08281 Sigma-70, region 4 125 177 2.5E-8 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24645 3fcb17852f3983d521e1ea92c3484ecb 187 Gene3D G3DSA:1.10.10.10 121 182 1.0E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24645 3fcb17852f3983d521e1ea92c3484ecb 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 178 5.1E-32 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24645 3fcb17852f3983d521e1ea92c3484ecb 187 SUPERFAMILY SSF88659 107 182 9.16E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24645 3fcb17852f3983d521e1ea92c3484ecb 187 Pfam PF04542 Sigma-70 region 2 27 94 8.3E-13 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS11970 327025438de6bae051fc7bb4836b2b25 60 Pfam PF14169 Cold-inducible protein YdjO 7 57 1.0E-14 T 11-11-2016 IPR025916 Cold-inducible protein YdjO Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 SMART SM00895 88 212 2.5E-23 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 SUPERFAMILY SSF46785 11 106 7.1E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 1.2E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 1.2E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 Pfam PF07729 FCD domain 88 211 3.7E-29 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 SMART SM00345 20 78 3.1E-18 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 78 1.8E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 Gene3D G3DSA:1.20.120.530 81 222 1.1E-35 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 SUPERFAMILY SSF48008 84 219 3.4E-31 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS13005 4ea55670036de59fd508e3e028507fa9 223 Gene3D G3DSA:1.10.10.10 7 79 4.5E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18070 a9aa3e3562c9c65038ec98d4f86770c6 149 SUPERFAMILY SSF89623 1 143 7.46E-50 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS18070 a9aa3e3562c9c65038ec98d4f86770c6 149 Pfam PF02502 Ribose/Galactose Isomerase 4 138 1.3E-47 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS18070 a9aa3e3562c9c65038ec98d4f86770c6 149 PIRSF PIRSF005384 1 147 3.6E-50 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS18070 a9aa3e3562c9c65038ec98d4f86770c6 149 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 4 144 5.0E-40 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS18070 a9aa3e3562c9c65038ec98d4f86770c6 149 Gene3D G3DSA:3.40.1400.10 1 147 1.6E-53 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 Gene3D G3DSA:3.40.50.620 70 262 1.8E-59 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 Gene3D G3DSA:3.40.50.1220 269 392 4.6E-44 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 Pfam PF12838 4Fe-4S dicluster domain 10 53 4.3E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 Gene3D G3DSA:3.30.70.20 4 63 3.1E-14 T 11-11-2016 Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 SUPERFAMILY SSF54862 6 86 4.57E-14 T 11-11-2016 Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 PIRSF PIRSF000089 68 395 2.3E-88 T 11-11-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 SUPERFAMILY SSF52402 71 242 1.6E-42 T 11-11-2016 Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 Pfam PF01012 Electron transfer flavoprotein domain 73 236 1.0E-30 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 SUPERFAMILY SSF52467 272 391 8.18E-40 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 39 50 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 SMART SM00893 72 259 8.8E-31 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS04580 2525c41ae4a2a096bd32f01d5a25f7c3 398 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 273 354 7.7E-30 T 11-11-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 SMART SM00729 10 214 6.3E-16 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 Gene3D G3DSA:3.20.20.70 3 298 3.4E-81 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 Pfam PF13353 4Fe-4S single cluster domain 20 130 1.5E-10 T 11-11-2016 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 Pfam PF06463 Molybdenum Cofactor Synthesis C 181 303 2.6E-35 T 11-11-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 1 321 1.5E-113 T 11-11-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 Pfam PF04055 Radical SAM superfamily 14 175 1.9E-32 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 SUPERFAMILY SSF102114 3 271 4.19E-76 T 11-11-2016 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 1 321 39.365 T 11-11-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20825 3c495c4e25d55312740d01dae40f118e 321 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 16 27 - T 11-11-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS05210 4514905397a086386ee978ead42baff0 250 Gene3D G3DSA:1.10.3720.10 11 239 1.5E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05210 4514905397a086386ee978ead42baff0 250 SUPERFAMILY SSF161098 60 241 8.37E-17 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05210 4514905397a086386ee978ead42baff0 250 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 234 4.7E-9 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05420 ef71ad8b3a42f561ff2b50bd641e3602 123 SUPERFAMILY SSF52172 1 120 3.56E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS05420 ef71ad8b3a42f561ff2b50bd641e3602 123 Gene3D G3DSA:3.40.50.2300 2 121 1.6E-39 T 11-11-2016 Gferi_RS05420 ef71ad8b3a42f561ff2b50bd641e3602 123 SMART SM00448 2 115 3.7E-38 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05420 ef71ad8b3a42f561ff2b50bd641e3602 123 Pfam PF00072 Response regulator receiver domain 4 115 1.5E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS26995 cee3b6e4b36ea3a4ed427daf0a44516d 229 Pfam PF00072 Response regulator receiver domain 4 112 4.9E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS26995 cee3b6e4b36ea3a4ed427daf0a44516d 229 Gene3D G3DSA:1.10.10.10 129 224 1.6E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26995 cee3b6e4b36ea3a4ed427daf0a44516d 229 SUPERFAMILY SSF46894 128 224 5.39E-26 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS26995 cee3b6e4b36ea3a4ed427daf0a44516d 229 SMART SM00448 2 112 1.7E-35 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS26995 cee3b6e4b36ea3a4ed427daf0a44516d 229 SUPERFAMILY SSF52172 2 120 1.17E-35 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS26995 cee3b6e4b36ea3a4ed427daf0a44516d 229 Gene3D G3DSA:3.40.50.2300 2 121 1.3E-36 T 11-11-2016 Gferi_RS26995 cee3b6e4b36ea3a4ed427daf0a44516d 229 SMART SM00862 150 222 5.1E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS26995 cee3b6e4b36ea3a4ed427daf0a44516d 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 222 2.7E-22 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 PIRSF PIRSF001365 1 291 6.1E-81 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 Gene3D G3DSA:3.20.20.70 2 290 1.4E-105 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 11-11-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 7.2E-30 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 7.2E-30 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 7.2E-30 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 7.2E-30 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 SUPERFAMILY SSF51569 2 289 2.3E-89 T 11-11-2016 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 SMART SM01130 3 289 2.7E-119 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 7 287 5.1E-99 T 11-11-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 Pfam PF00701 Dihydrodipicolinate synthetase family 5 286 5.2E-88 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 287 58.97 T 11-11-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS25705 4a36fb5ccc789f972b39201f6e3a402a 291 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 11-11-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS09220 03ba8abf58f1506735bcaa8ee4eb5831 563 Pfam PF00704 Glycosyl hydrolases family 18 285 533 1.1E-24 T 11-11-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 Gferi_RS09220 03ba8abf58f1506735bcaa8ee4eb5831 563 Gene3D G3DSA:3.20.20.80 254 538 7.6E-37 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS09220 03ba8abf58f1506735bcaa8ee4eb5831 563 SMART SM00636 215 536 3.2E-7 T 11-11-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 Gferi_RS09220 03ba8abf58f1506735bcaa8ee4eb5831 563 SUPERFAMILY SSF51445 254 446 4.7E-43 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS09220 03ba8abf58f1506735bcaa8ee4eb5831 563 SUPERFAMILY SSF51445 508 546 4.7E-43 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS09220 03ba8abf58f1506735bcaa8ee4eb5831 563 Pfam PF07833 Copper amine oxidase N-terminal domain 53 143 5.9E-5 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS09220 03ba8abf58f1506735bcaa8ee4eb5831 563 Gene3D G3DSA:2.30.30.40 177 213 2.2E-4 T 11-11-2016 Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 SUPERFAMILY SSF46785 3 113 3.17E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 Pfam PF03466 LysR substrate binding domain 91 293 7.4E-33 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 Gene3D G3DSA:3.40.190.10 197 266 6.5E-11 T 11-11-2016 Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 Gene3D G3DSA:3.40.190.10 83 196 2.1E-21 T 11-11-2016 Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 SUPERFAMILY SSF53850 92 294 1.1E-31 T 11-11-2016 Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 6.4E-21 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 7.6E-9 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 7.6E-9 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 7.6E-9 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS10030 0be6365136d4d1cfbcd77e0dc684a0d9 295 Gene3D G3DSA:1.10.10.10 3 82 1.7E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 SUPERFAMILY SSF46689 5 55 1.93E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 SUPERFAMILY SSF55136 128 289 1.18E-27 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 Pfam PF12833 Helix-turn-helix domain 27 106 1.4E-17 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 Gene3D G3DSA:1.10.10.60 58 115 6.3E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 Gene3D G3DSA:3.20.80.10 116 286 2.9E-26 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 SMART SM00871 128 287 4.6E-30 T 11-11-2016 IPR010499 Bacterial transcription activator, effector binding Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 Pfam PF06445 GyrI-like small molecule binding domain 128 286 4.1E-28 T 11-11-2016 IPR029442 GyrI-like small molecule binding domain Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 SUPERFAMILY SSF46689 57 109 8.06E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 SMART SM00342 21 104 1.2E-25 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21910 013f4fcba49d1de36b5a4e8f5897ae23 289 Gene3D G3DSA:1.10.10.60 3 57 1.1E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 33 50 - T 11-11-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 85 123 7.5E-17 T 11-11-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 SMART SM00902 519 578 4.2E-28 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Gene3D G3DSA:3.10.20.30 3 55 1.2E-8 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 SUPERFAMILY SSF53920 191 575 2.62E-132 T 11-11-2016 IPR009016 Iron hydrogenase Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 78 1.9E-19 T 11-11-2016 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Gene3D G3DSA:3.40.50.1780 301 429 2.5E-76 T 11-11-2016 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Gene3D G3DSA:3.40.50.1780 196 249 2.5E-76 T 11-11-2016 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Gene3D G3DSA:3.40.950.10 430 503 2.9E-7 T 11-11-2016 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 191 202 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Gene3D G3DSA:3.30.70.20 133 195 3.2E-14 T 11-11-2016 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 TIGRFAM TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A 140 513 3.4E-173 T 11-11-2016 IPR013352 Iron hydrogenase, subset GO:0005506|GO:0008901|GO:0051536|GO:0055114 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 SUPERFAMILY SSF54292 4 76 6.13E-21 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 SUPERFAMILY SSF54862 77 216 1.97E-36 T 11-11-2016 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Gene3D G3DSA:4.10.260.20 520 588 2.2E-27 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 225 509 5.6E-98 T 11-11-2016 IPR004108 Iron hydrogenase, large subunit, C-terminal Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Pfam PF00037 4Fe-4S binding domain 187 206 5.6E-5 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Pfam PF00037 4Fe-4S binding domain 141 158 4.2E-5 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 SMART SM00929 85 125 8.9E-18 T 11-11-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20715 557dae4ffc6223c3425edc8d93d8260b 599 Pfam PF02256 Iron hydrogenase small subunit 523 577 2.1E-25 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 523 646 2.1E-51 T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 SUPERFAMILY SSF51261 518 664 3.14E-53 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 Gene3D G3DSA:2.70.70.10 517 664 1.4E-59 T 11-11-2016 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 441 458 - T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 503 1.8E-245 T 11-11-2016 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0015758|GO:0016021 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 SUPERFAMILY SSF55604 428 501 6.93E-22 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 524 644 2.7E-45 T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 403 487 7.9E-22 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 Pfam PF00367 phosphotransferase system, EIIB 432 463 2.6E-14 T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 Pfam PF02378 Phosphotransferase system, EIIC 13 343 4.2E-91 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 586 598 - T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS25015 d93bc3a9e58d7434a3a96c2309124a01 670 Gene3D G3DSA:3.30.1360.60 427 502 1.2E-27 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Pfam PF13361 UvrD-like helicase C-terminal domain 634 969 1.2E-73 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 SUPERFAMILY SSF51294 562 608 6.75E-15 T 11-11-2016 IPR028992 Hedgehog/Intein (Hint) domain Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 SUPERFAMILY SSF51294 249 344 6.75E-15 T 11-11-2016 IPR028992 Hedgehog/Intein (Hint) domain Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:1.10.10.160 109 184 4.2E-21 T 11-11-2016 IPR013986 DExx box DNA helicase domain Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 SMART SM00305 568 614 6.7E-6 T 11-11-2016 IPR003586 Hint domain C-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:2.170.16.10 566 608 2.0E-7 T 11-11-2016 IPR028992 Hedgehog/Intein (Hint) domain Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:2.170.16.10 250 317 1.4E-6 T 11-11-2016 IPR028992 Hedgehog/Intein (Hint) domain Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:3.40.50.300 643 745 1.2E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:3.40.50.300 907 997 1.2E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:1.10.486.10 746 891 1.7E-49 T 11-11-2016 Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 SUPERFAMILY SSF52540 609 671 3.19E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 SUPERFAMILY SSF52540 4 251 2.1E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 SUPERFAMILY SSF52540 648 1001 4.02E-102 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 249 1.4E-71 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:3.40.50.300 609 642 1.2E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:3.40.50.300 186 249 1.0E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09545 3ca978850be8e4eedfab1b90ea1900a0 1089 Gene3D G3DSA:3.40.50.300 3 106 1.0E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 SUPERFAMILY SSF89550 4 268 8.44E-43 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 Gene3D G3DSA:3.20.20.140 4 262 1.3E-59 T 11-11-2016 Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 SMART SM00481 5 72 1.5E-34 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 Gene3D G3DSA:2.40.50.140 990 1067 5.8E-5 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 Pfam PF02811 PHP domain 6 178 8.0E-54 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 Pfam PF14579 Helix-hairpin-helix motif 804 892 9.6E-27 T 11-11-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 297 714 7.9E-179 T 11-11-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 Pfam PF01336 OB-fold nucleic acid binding domain 1004 1074 7.6E-8 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Gferi_RS20950 b282604a8293680de5efe6bd467034f4 1156 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 4 1035 0.0 T 11-11-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 Gene3D G3DSA:3.30.1330.90 321 449 1.2E-39 T 11-11-2016 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 Gene3D G3DSA:3.40.50.720 4 118 5.1E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 Gene3D G3DSA:3.30.70.260 450 526 2.3E-23 T 11-11-2016 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 145 172 - T 11-11-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 SUPERFAMILY SSF52283 4 134 4.35E-36 T 11-11-2016 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 SUPERFAMILY SSF143548 325 452 6.28E-32 T 11-11-2016 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 Gene3D G3DSA:3.40.50.720 119 284 9.3E-63 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 6 530 2.2E-201 T 11-11-2016 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 Pfam PF01842 ACT domain 457 520 1.3E-10 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 315 1.9E-36 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 283 2.8E-58 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 SUPERFAMILY SSF55021 454 527 2.08E-17 T 11-11-2016 Gferi_RS12790 5916fcee49e92bdfe5ca1d9cb51aaaa0 530 SUPERFAMILY SSF51735 99 284 1.34E-56 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11090 b5d27ae402e47e34e770aff3c0035ef4 145 SUPERFAMILY SSF53927 6 142 1.81E-42 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 Gferi_RS11090 b5d27ae402e47e34e770aff3c0035ef4 145 Gene3D G3DSA:3.40.140.10 4 143 1.5E-51 T 11-11-2016 Gferi_RS11090 b5d27ae402e47e34e770aff3c0035ef4 145 PIRSF PIRSF006019 1 144 4.2E-56 T 11-11-2016 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-500753 Gferi_RS11090 b5d27ae402e47e34e770aff3c0035ef4 145 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 122 6.2E-30 T 11-11-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 Gferi_RS03660 26ca496b8c4b20ea5a2baa617801a9dd 106 Gene3D G3DSA:3.30.460.10 5 103 6.3E-22 T 11-11-2016 Gferi_RS03660 26ca496b8c4b20ea5a2baa617801a9dd 106 Pfam PF01909 Nucleotidyltransferase domain 17 82 2.3E-8 T 11-11-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Gferi_RS03660 26ca496b8c4b20ea5a2baa617801a9dd 106 SUPERFAMILY SSF81301 7 106 1.59E-18 T 11-11-2016 Gferi_RS03455 2f6c30ef6cb94d75417e5c9e62df1e5b 343 SUPERFAMILY SSF53850 44 338 2.39E-60 T 11-11-2016 Gferi_RS03455 2f6c30ef6cb94d75417e5c9e62df1e5b 343 Pfam PF13343 Bacterial extracellular solute-binding protein 95 312 6.0E-29 T 11-11-2016 Gferi_RS03455 2f6c30ef6cb94d75417e5c9e62df1e5b 343 Gene3D G3DSA:3.40.190.10 5 141 1.6E-45 T 11-11-2016 Gferi_RS03455 2f6c30ef6cb94d75417e5c9e62df1e5b 343 Gene3D G3DSA:3.40.190.10 277 318 1.6E-45 T 11-11-2016 Gferi_RS03455 2f6c30ef6cb94d75417e5c9e62df1e5b 343 PIRSF PIRSF002825 1 340 5.8E-68 T 11-11-2016 IPR026045 Ferric binding protein Gferi_RS03455 2f6c30ef6cb94d75417e5c9e62df1e5b 343 Gene3D G3DSA:3.40.190.10 145 276 2.1E-31 T 11-11-2016 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 SUPERFAMILY SSF101386 121 206 1.1E-22 T 11-11-2016 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 SUPERFAMILY SSF141734 3 109 5.75E-48 T 11-11-2016 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 3 106 30.791 T 11-11-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 122 201 2.6E-14 T 11-11-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 115 201 20.295 T 11-11-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 121 201 3.1E-30 T 11-11-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 5 206 37.037 T 11-11-2016 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 29 102 3.6E-35 T 11-11-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Gferi_RS25860 ec82d2fb3feb7b0111c392f02be26ee4 207 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 52 102 1.0E-16 T 11-11-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 Pfam PF00512 His Kinase A (phospho-acceptor) domain 386 453 4.1E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 SMART SM00304 205 257 5.4E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 Gene3D G3DSA:3.30.565.10 463 609 1.9E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 Gene3D G3DSA:3.30.450.20 267 383 3.5E-13 T 11-11-2016 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 SMART SM00387 500 611 3.3E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 Gene3D G3DSA:1.10.287.130 384 450 1.8E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 Pfam PF13426 PAS domain 280 379 2.2E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 SUPERFAMILY SSF55785 272 374 5.06E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 SMART SM00388 386 454 4.6E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 SUPERFAMILY SSF55874 443 611 1.3E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 272 385 5.1E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 SUPERFAMILY SSF47384 371 454 4.32E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 165 4.7E-12 T 11-11-2016 IPR024478 4HB MCP domain Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 589 2.0E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 565 2.0E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 551 2.0E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 608 2.0E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 SUPERFAMILY SSF158472 207 252 3.53E-10 T 11-11-2016 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 Pfam PF00672 HAMP domain 186 252 5.9E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 501 609 1.8E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05385 cb6dea4e90c10e95a86ed6a5b90e92ff 614 SMART SM00091 268 335 0.0033 T 11-11-2016 IPR000014 PAS domain Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 66 270 2.5E-53 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 29 273 1.3E-77 T 11-11-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 Pfam PF02355 Protein export membrane protein 106 282 7.9E-66 T 11-11-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 3 284 28.681 T 11-11-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 Gene3D G3DSA:1.20.1640.10 114 289 1.3E-24 T 11-11-2016 Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 PRINTS PR01755 Bacterial translocase SecF protein signature 28 43 2.5E-31 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 PRINTS PR01755 Bacterial translocase SecF protein signature 221 236 2.5E-31 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 PRINTS PR01755 Bacterial translocase SecF protein signature 189 207 2.5E-31 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 PRINTS PR01755 Bacterial translocase SecF protein signature 141 155 2.5E-31 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 Pfam PF07549 SecD/SecF GG Motif 28 49 1.1E-6 T 11-11-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Gferi_RS26660 2a16d8570ae1b5269afd334399916c03 293 SUPERFAMILY SSF82866 113 286 1.15E-38 T 11-11-2016 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 Gene3D G3DSA:3.40.50.720 3 182 3.1E-62 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 SUPERFAMILY SSF51735 5 177 1.07E-53 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 3 321 36.776 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 Gene3D G3DSA:1.10.1040.10 183 325 8.3E-59 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 PIRSF PIRSF000114 1 331 1.8E-110 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 179 319 2.7E-55 T 11-11-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 SUPERFAMILY SSF48179 179 330 1.41E-57 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 187 208 - T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 5 159 9.6E-53 T 11-11-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 172 196 2.3E-44 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 57 84 2.3E-44 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 237 254 2.3E-44 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 7 24 2.3E-44 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 197 221 2.3E-44 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS01840 4de5f8b9f9c63f63933f7ff44399ed04 342 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 132 152 2.3E-44 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS08265 a45619e2d93fa6e99ca78bbddac7ed92 592 SUPERFAMILY SSF56601 358 586 2.01E-35 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS08265 a45619e2d93fa6e99ca78bbddac7ed92 592 Gene3D G3DSA:3.40.710.10 362 590 3.0E-76 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS08265 a45619e2d93fa6e99ca78bbddac7ed92 592 Pfam PF00905 Penicillin binding protein transpeptidase domain 384 585 2.6E-35 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Gferi_RS08265 a45619e2d93fa6e99ca78bbddac7ed92 592 Gene3D G3DSA:3.30.2010.10 156 227 8.5E-6 T 11-11-2016 Gferi_RS08265 a45619e2d93fa6e99ca78bbddac7ed92 592 Pfam PF05569 BlaR1 peptidase M56 10 306 1.8E-62 T 11-11-2016 IPR008756 Peptidase M56 Gferi_RS00695 632cc12f3dd8c23bc77a973bd9564716 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 3.0E-30 T 11-11-2016 Gferi_RS00695 632cc12f3dd8c23bc77a973bd9564716 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 1.9E-40 T 11-11-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS00695 632cc12f3dd8c23bc77a973bd9564716 89 SUPERFAMILY SSF47060 3 89 4.71E-36 T 11-11-2016 IPR009068 S15/NS1, RNA-binding Gferi_RS00695 632cc12f3dd8c23bc77a973bd9564716 89 Gene3D G3DSA:1.10.287.10 3 89 1.2E-39 T 11-11-2016 IPR009068 S15/NS1, RNA-binding Gferi_RS00695 632cc12f3dd8c23bc77a973bd9564716 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-11-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00695 632cc12f3dd8c23bc77a973bd9564716 89 Pfam PF00312 Ribosomal protein S15 10 88 1.1E-37 T 11-11-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00695 632cc12f3dd8c23bc77a973bd9564716 89 SMART SM01387 8 88 1.4E-52 T 11-11-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00695 632cc12f3dd8c23bc77a973bd9564716 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 23.085 T 11-11-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02720 1d8b2b7988e8dff62d40721e2bfae9ba 216 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 79 108 - T 11-11-2016 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site Gferi_RS02720 1d8b2b7988e8dff62d40721e2bfae9ba 216 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 3 200 3.5E-61 T 11-11-2016 IPR015796 Impact family, bacterial/archaeal Gferi_RS02720 1d8b2b7988e8dff62d40721e2bfae9ba 216 SUPERFAMILY SSF54211 2 132 4.17E-42 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS02720 1d8b2b7988e8dff62d40721e2bfae9ba 216 Pfam PF09186 Domain of unknown function (DUF1949) 140 195 1.5E-13 T 11-11-2016 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal Gferi_RS02720 1d8b2b7988e8dff62d40721e2bfae9ba 216 SUPERFAMILY SSF54980 135 201 4.6E-9 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS02720 1d8b2b7988e8dff62d40721e2bfae9ba 216 Gene3D G3DSA:3.30.230.30 5 132 3.4E-45 T 11-11-2016 IPR001498 Impact, N-terminal Gferi_RS02720 1d8b2b7988e8dff62d40721e2bfae9ba 216 Pfam PF01205 Uncharacterized protein family UPF0029 20 124 2.6E-29 T 11-11-2016 IPR001498 Impact, N-terminal Gferi_RS02720 1d8b2b7988e8dff62d40721e2bfae9ba 216 Gene3D G3DSA:3.30.70.240 138 205 2.6E-7 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS21180 df10217931769b427c4b61401b774040 246 Gene3D G3DSA:3.40.50.2300 1 113 4.3E-17 T 11-11-2016 Gferi_RS21180 df10217931769b427c4b61401b774040 246 Pfam PF04397 LytTr DNA-binding domain 145 233 8.1E-20 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS21180 df10217931769b427c4b61401b774040 246 SMART SM00850 141 234 1.8E-19 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS21180 df10217931769b427c4b61401b774040 246 SUPERFAMILY SSF52172 1 111 1.99E-12 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS21180 df10217931769b427c4b61401b774040 246 Pfam PF00072 Response regulator receiver domain 4 112 1.4E-10 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21180 df10217931769b427c4b61401b774040 246 SMART SM00448 2 124 6.0E-5 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21180 df10217931769b427c4b61401b774040 246 Gene3D G3DSA:2.40.50.40 133 200 2.7E-17 T 11-11-2016 Gferi_RS02300 aa555d58f9c243178cf2d0e07e81990b 439 SUPERFAMILY SSF52096 15 198 1.13E-23 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS02300 aa555d58f9c243178cf2d0e07e81990b 439 Pfam PF01972 Serine dehydrogenase proteinase 58 126 2.2E-4 T 11-11-2016 IPR002825 Peptidase S49, serine-peptidase prokaryotes GO:0016021 Gferi_RS02300 aa555d58f9c243178cf2d0e07e81990b 439 Pfam PF01957 NfeD-like C-terminal, partner-binding 289 438 2.5E-17 T 11-11-2016 IPR002810 NfeD-like, C-terminal domain Gferi_RS02300 aa555d58f9c243178cf2d0e07e81990b 439 Gene3D G3DSA:3.90.226.10 30 196 1.2E-15 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS10015 23b5766d6507493ec810de86f9c6c239 232 SUPERFAMILY SSF56104 2 232 7.52E-84 T 11-11-2016 Gferi_RS10015 23b5766d6507493ec810de86f9c6c239 232 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 232 31.722 T 11-11-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS10015 23b5766d6507493ec810de86f9c6c239 232 Gene3D G3DSA:3.30.470.20 94 219 3.1E-52 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS10015 23b5766d6507493ec810de86f9c6c239 232 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 230 3.4E-75 T 11-11-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 Gferi_RS10015 23b5766d6507493ec810de86f9c6c239 232 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 11-11-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS10015 23b5766d6507493ec810de86f9c6c239 232 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 11-11-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS10015 23b5766d6507493ec810de86f9c6c239 232 Gene3D G3DSA:3.30.200.20 6 93 2.3E-38 T 11-11-2016 Gferi_RS10015 23b5766d6507493ec810de86f9c6c239 232 Pfam PF01259 SAICAR synthetase 6 230 3.3E-69 T 11-11-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS07890 59b181ef6803edebf86b0d3adea9e61c 400 Gene3D G3DSA:1.20.1250.20 208 381 5.7E-19 T 11-11-2016 Gferi_RS07890 59b181ef6803edebf86b0d3adea9e61c 400 SUPERFAMILY SSF103473 10 386 1.12E-46 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS07890 59b181ef6803edebf86b0d3adea9e61c 400 Gene3D G3DSA:1.20.1250.20 14 202 7.7E-18 T 11-11-2016 Gferi_RS07890 59b181ef6803edebf86b0d3adea9e61c 400 Pfam PF07690 Major Facilitator Superfamily 222 383 9.9E-9 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS07890 59b181ef6803edebf86b0d3adea9e61c 400 Pfam PF00083 Sugar (and other) transporter 18 187 2.3E-11 T 11-11-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 Gferi_RS01890 03660637e33e5fc0668b80f0d92c1862 271 SUPERFAMILY SSF64438 12 270 3.51E-78 T 11-11-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic Gferi_RS01890 03660637e33e5fc0668b80f0d92c1862 271 Gene3D G3DSA:3.60.140.10 14 270 3.1E-80 T 11-11-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase Gferi_RS01890 03660637e33e5fc0668b80f0d92c1862 271 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 36 270 5.9E-60 T 11-11-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase Gferi_RS01890 03660637e33e5fc0668b80f0d92c1862 271 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 32 268 2.7E-75 T 11-11-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase Gferi_RS11115 a04459c69149b1e251aa990d080f9d42 241 Pfam PF02535 ZIP Zinc transporter 100 233 6.5E-21 T 11-11-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Gferi_RS14020 f4e488992a8ddc5f766e8110d84d50e6 289 SUPERFAMILY SSF55166 118 271 6.54E-40 T 11-11-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 Gferi_RS14020 f4e488992a8ddc5f766e8110d84d50e6 289 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 134 262 3.9E-44 T 11-11-2016 IPR003709 Peptidase M15B GO:0006508|GO:0008233 Gferi_RS14020 f4e488992a8ddc5f766e8110d84d50e6 289 Gene3D G3DSA:3.30.1380.10 133 207 2.7E-5 T 11-11-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 Gferi_RS03465 587bc27a6a8b11d55690f76c1e529e8e 277 SUPERFAMILY SSF53697 94 255 2.89E-23 T 11-11-2016 Gferi_RS03465 587bc27a6a8b11d55690f76c1e529e8e 277 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 66 6.9E-12 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Gferi_RS03465 587bc27a6a8b11d55690f76c1e529e8e 277 Gene3D G3DSA:1.10.10.10 3 72 5.6E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03465 587bc27a6a8b11d55690f76c1e529e8e 277 Gene3D G3DSA:3.40.50.10490 98 256 8.9E-20 T 11-11-2016 Gferi_RS03465 587bc27a6a8b11d55690f76c1e529e8e 277 SUPERFAMILY SSF46689 4 71 7.7E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS03465 587bc27a6a8b11d55690f76c1e529e8e 277 Pfam PF01380 SIS domain 126 248 6.1E-13 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS13540 02763ed7904503f215d1136839add27d 566 SMART SM00304 208 261 6.7E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13540 02763ed7904503f215d1136839add27d 566 SUPERFAMILY SSF58104 296 565 8.89E-68 T 11-11-2016 Gferi_RS13540 02763ed7904503f215d1136839add27d 566 SUPERFAMILY SSF58104 229 263 8.89E-68 T 11-11-2016 Gferi_RS13540 02763ed7904503f215d1136839add27d 566 SMART SM00283 290 565 6.9E-72 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS13540 02763ed7904503f215d1136839add27d 566 Gene3D G3DSA:1.10.287.950 243 315 1.4E-4 T 11-11-2016 Gferi_RS13540 02763ed7904503f215d1136839add27d 566 Gene3D G3DSA:1.10.287.950 316 523 7.4E-47 T 11-11-2016 Gferi_RS13540 02763ed7904503f215d1136839add27d 566 Pfam PF00672 HAMP domain 188 257 5.5E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13540 02763ed7904503f215d1136839add27d 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 352 546 9.1E-49 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 189 199 - T 11-11-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 5 358 5.2E-146 T 11-11-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 SUPERFAMILY SSF51161 225 398 2.62E-30 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 11 30 - T 11-11-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 Pfam PF00483 Nucleotidyl transferase 7 259 6.8E-69 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 Gene3D G3DSA:3.90.550.10 5 269 6.9E-88 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 Gene3D G3DSA:3.90.550.10 306 348 6.9E-88 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 98 106 - T 11-11-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 2 398 49.492 T 11-11-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 SUPERFAMILY SSF53448 2 262 2.82E-85 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20655 118bd2218c32baec9bc6a971871934a0 402 SUPERFAMILY SSF53448 323 339 2.82E-85 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 SUPERFAMILY SSF51905 2 319 6.92E-45 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 290 5.2E-64 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 SUPERFAMILY SSF52821 428 543 1.44E-23 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 Gene3D G3DSA:3.50.50.60 111 318 2.2E-59 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.6E-15 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 280 287 2.6E-15 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 179 2.6E-15 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 239 253 2.6E-15 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 391 406 2.6E-15 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 SMART SM00450 448 550 6.8E-11 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 Gene3D G3DSA:3.40.250.10 448 543 5.8E-23 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 Pfam PF00581 Rhodanese-like domain 460 543 1.3E-13 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 6.1E-27 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 6.1E-27 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 6.1E-27 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 6.1E-27 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 238 254 6.1E-27 T 11-11-2016 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 Gene3D G3DSA:3.50.50.60 1 110 6.8E-18 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 SUPERFAMILY SSF55424 327 451 5.15E-32 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 Gene3D G3DSA:3.30.390.30 340 447 2.7E-35 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS12055 d1812b1bc86e171315503248bb29dfc3 550 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 334 437 5.6E-19 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 379 5.8E-157 T 11-11-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 SUPERFAMILY SSF51735 3 149 3.02E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 Pfam PF13288 DXP reductoisomerase C-terminal domain 260 376 1.5E-42 T 11-11-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 SUPERFAMILY SSF55347 125 263 3.07E-61 T 11-11-2016 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 145 228 6.8E-41 T 11-11-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 131 5.8E-44 T 11-11-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 PIRSF PIRSF006205 2 384 1.2E-161 T 11-11-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 Gene3D G3DSA:1.10.1740.10 302 382 1.1E-28 T 11-11-2016 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 381 47.0 T 11-11-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 SUPERFAMILY SSF69055 291 382 1.96E-30 T 11-11-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 Gferi_RS00765 2b5ae550df1697feacf36b2d8e5ce280 384 Gene3D G3DSA:3.40.50.720 2 149 1.3E-53 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS08945 dd23735953fd29bea04478253811bed5 204 PIRSF PIRSF000705 1 203 4.0E-51 T 11-11-2016 IPR002624 Deoxynucleoside kinase GO:0005524|GO:0006139|GO:0019206 Gferi_RS08945 dd23735953fd29bea04478253811bed5 204 Gene3D G3DSA:3.40.50.300 3 195 1.3E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08945 dd23735953fd29bea04478253811bed5 204 SUPERFAMILY SSF52540 1 202 5.51E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08945 dd23735953fd29bea04478253811bed5 204 Pfam PF01712 Deoxynucleoside kinase 5 194 9.6E-56 T 11-11-2016 IPR031314 Deoxynucleoside kinase domain Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 Gene3D G3DSA:1.10.287.80 21 62 2.9E-29 T 11-11-2016 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 Gene3D G3DSA:1.10.287.80 201 234 2.9E-29 T 11-11-2016 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 Pfam PF00231 ATP synthase 6 286 1.2E-96 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 6 286 1.5E-101 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 272 285 - T 11-11-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 Gene3D G3DSA:1.10.287.80 235 281 6.5E-31 T 11-11-2016 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 Gene3D G3DSA:3.40.1380.10 66 190 1.4E-41 T 11-11-2016 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 SUPERFAMILY SSF52943 4 286 2.09E-88 T 11-11-2016 IPR023633 ATPase, F1 complex, gamma subunit domain Reactome: R-HSA-163210 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 PRINTS PR00126 ATP synthase gamma subunit signature 75 94 1.6E-39 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 PRINTS PR00126 ATP synthase gamma subunit signature 233 252 1.6E-39 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 PRINTS PR00126 ATP synthase gamma subunit signature 264 285 1.6E-39 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 PRINTS PR00126 ATP synthase gamma subunit signature 164 181 1.6E-39 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11020 6368544fb1e45c7a2ae1591cb2bac492 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 3 286 35.617 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS04180 22c98c6203f1cc23ef43db82eb718dff 294 Gene3D G3DSA:3.90.1280.10 235 290 1.6E-22 T 11-11-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Gferi_RS04180 22c98c6203f1cc23ef43db82eb718dff 294 Gene3D G3DSA:3.55.30.10 2 234 6.4E-80 T 11-11-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Gferi_RS04180 22c98c6203f1cc23ef43db82eb718dff 294 Pfam PF01430 Hsp33 protein 3 281 4.2E-91 T 11-11-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Gferi_RS04180 22c98c6203f1cc23ef43db82eb718dff 294 SUPERFAMILY SSF118352 234 290 8.89E-19 T 11-11-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 Gferi_RS04180 22c98c6203f1cc23ef43db82eb718dff 294 SUPERFAMILY SSF64397 2 241 1.96E-70 T 11-11-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 Gferi_RS04180 22c98c6203f1cc23ef43db82eb718dff 294 Hamap MF_00117 33 kDa chaperonin [hslO]. 2 292 37.505 T 11-11-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Gferi_RS04180 22c98c6203f1cc23ef43db82eb718dff 294 PIRSF PIRSF005261 1 293 2.0E-82 T 11-11-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 Gferi_RS15210 70f48ef6926232f7f6e9a1b0d27ce97d 579 Gene3D G3DSA:1.20.1560.10 3 313 3.2E-70 T 11-11-2016 Gferi_RS15210 70f48ef6926232f7f6e9a1b0d27ce97d 579 ProSitePatterns PS00211 ABC transporters family signature. 471 485 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15210 70f48ef6926232f7f6e9a1b0d27ce97d 579 SUPERFAMILY SSF90123 3 318 2.35E-80 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS15210 70f48ef6926232f7f6e9a1b0d27ce97d 579 Pfam PF00005 ABC transporter 350 499 1.8E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS15210 70f48ef6926232f7f6e9a1b0d27ce97d 579 Gene3D G3DSA:3.40.50.300 332 560 3.7E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15210 70f48ef6926232f7f6e9a1b0d27ce97d 579 SUPERFAMILY SSF52540 326 570 1.02E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15210 70f48ef6926232f7f6e9a1b0d27ce97d 579 Pfam PF00664 ABC transporter transmembrane region 16 285 8.5E-50 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS15210 70f48ef6926232f7f6e9a1b0d27ce97d 579 SMART SM00382 359 545 5.2E-16 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20355 679201d49a059a626a3f442836581952 299 Hamap MF_00663 Phosphatidylserine decarboxylase proenzyme [psd]. 5 299 40.518 T 11-11-2016 IPR033179 Phosphatidylserine decarboxylase, prokaryotic type 2 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 Gferi_RS20355 679201d49a059a626a3f442836581952 299 Pfam PF02666 Phosphatidylserine decarboxylase 91 297 2.9E-57 T 11-11-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Gferi_RS20355 679201d49a059a626a3f442836581952 299 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 77 283 1.0E-43 T 11-11-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Gferi_RS25755 e6a9cda94f3dbd84144fa71663064567 333 PIRSF PIRSF011570 1 333 2.4E-163 T 11-11-2016 IPR010894 Stage V sporulation AD Gferi_RS25755 e6a9cda94f3dbd84144fa71663064567 333 Pfam PF07451 Stage V sporulation protein AD (SpoVAD) 4 332 5.1E-161 T 11-11-2016 IPR010894 Stage V sporulation AD Gferi_RS25755 e6a9cda94f3dbd84144fa71663064567 333 Gene3D G3DSA:3.40.47.10 54 174 8.7E-11 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS25755 e6a9cda94f3dbd84144fa71663064567 333 SUPERFAMILY SSF53901 56 309 1.2E-16 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS25755 e6a9cda94f3dbd84144fa71663064567 333 TIGRFAM TIGR02845 spore_V_AD: stage V sporulation protein AD 5 332 2.6E-155 T 11-11-2016 IPR010894 Stage V sporulation AD Gferi_RS26730 878a07be619166eed02397348f6614b3 410 SUPERFAMILY SSF53383 3 409 2.67E-183 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS26730 878a07be619166eed02397348f6614b3 410 PIRSF PIRSF000412 1 406 5.4E-175 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Gferi_RS26730 878a07be619166eed02397348f6614b3 410 Gene3D G3DSA:3.40.640.10 35 281 7.9E-110 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS26730 878a07be619166eed02397348f6614b3 410 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 220 236 - T 11-11-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Gferi_RS26730 878a07be619166eed02397348f6614b3 410 Pfam PF00464 Serine hydroxymethyltransferase 7 382 6.7E-182 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Gferi_RS26730 878a07be619166eed02397348f6614b3 410 Gene3D G3DSA:3.90.1150.10 282 410 2.1E-56 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS26730 878a07be619166eed02397348f6614b3 410 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 5 410 53.429 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 17 314 5.4E-22 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 195 217 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 SUPERFAMILY SSF52283 23 124 6.59E-22 T 11-11-2016 Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 286 4.9E-62 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 Gene3D G3DSA:3.40.50.720 119 288 4.5E-64 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 175 - T 11-11-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 SUPERFAMILY SSF51735 106 286 7.76E-56 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 Gene3D G3DSA:3.40.50.720 14 118 1.5E-24 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS16980 642c38677622ef3d8c0bcb2baa80e804 318 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 224 240 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS21590 8da14d2a83b229e0ab02f23962081b47 119 Gene3D G3DSA:1.10.10.10 3 75 1.4E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21590 8da14d2a83b229e0ab02f23962081b47 119 SUPERFAMILY SSF46785 3 115 6.28E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21590 8da14d2a83b229e0ab02f23962081b47 119 PIRSF PIRSF019455 1 119 3.5E-27 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS21590 8da14d2a83b229e0ab02f23962081b47 119 Pfam PF03965 Penicillinase repressor 7 115 4.8E-22 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS20895 9c6934e574250f27d1e682eff43b4c2a 243 SUPERFAMILY SSF89550 3 240 1.11E-43 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS20895 9c6934e574250f27d1e682eff43b4c2a 243 Pfam PF02811 PHP domain 6 98 7.0E-13 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS20895 9c6934e574250f27d1e682eff43b4c2a 243 Gene3D G3DSA:3.20.20.140 3 241 1.1E-44 T 11-11-2016 Gferi_RS20895 9c6934e574250f27d1e682eff43b4c2a 243 SMART SM00481 5 83 7.8E-12 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS16225 a500aedc1800688f9918be6bf541c831 228 SUPERFAMILY SSF102114 20 182 1.96E-27 T 11-11-2016 Gferi_RS16225 a500aedc1800688f9918be6bf541c831 228 Pfam PF04055 Radical SAM superfamily 23 161 3.3E-15 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS16225 a500aedc1800688f9918be6bf541c831 228 Pfam PF13353 4Fe-4S single cluster domain 19 123 2.9E-14 T 11-11-2016 Gferi_RS16225 a500aedc1800688f9918be6bf541c831 228 Gene3D G3DSA:3.20.20.70 21 180 2.5E-25 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS16225 a500aedc1800688f9918be6bf541c831 228 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 5 190 4.2E-65 T 11-11-2016 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein Gferi_RS20325 911f884fb79da78c464b86a711f6a4d2 1141 SUPERFAMILY SSF52540 289 718 4.96E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20325 911f884fb79da78c464b86a711f6a4d2 1141 Pfam PF12705 PD-(D/E)XK nuclease superfamily 757 1096 2.1E-59 T 11-11-2016 Gferi_RS20325 911f884fb79da78c464b86a711f6a4d2 1141 Pfam PF13361 UvrD-like helicase C-terminal domain 300 640 3.8E-6 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Gferi_RS20325 911f884fb79da78c464b86a711f6a4d2 1141 Hamap MF_01452 ATP-dependent helicase/deoxyribonuclease subunit B [addB]. 1 1127 56.102 T 11-11-2016 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 Gferi_RS20325 911f884fb79da78c464b86a711f6a4d2 1141 TIGRFAM TIGR02773 addB_Gpos: helicase-exonuclease AddAB, AddB subunit 1 1124 0.0 T 11-11-2016 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 Gferi_RS20325 911f884fb79da78c464b86a711f6a4d2 1141 SUPERFAMILY SSF52980 757 984 8.04E-5 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Gferi_RS20325 911f884fb79da78c464b86a711f6a4d2 1141 Gene3D G3DSA:3.40.50.300 556 660 2.1E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20325 911f884fb79da78c464b86a711f6a4d2 1141 Gene3D G3DSA:3.40.50.300 299 381 2.1E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01915 a122f87c5748de6141c95358d0b00051 298 PIRSF PIRSF018571 2 298 1.7E-100 T 11-11-2016 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 Gferi_RS01915 a122f87c5748de6141c95358d0b00051 298 Pfam PF03419 Sporulation factor SpoIIGA 3 296 5.5E-91 T 11-11-2016 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 Gferi_RS01915 a122f87c5748de6141c95358d0b00051 298 TIGRFAM TIGR02854 spore_II_GA: sigma-E processing peptidase SpoIIGA 4 297 3.0E-77 T 11-11-2016 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 Gferi_RS22135 22d4f4616f1187d184010f2f4e8ceac4 438 Gene3D G3DSA:1.20.1600.10 142 206 7.8E-6 T 11-11-2016 Gferi_RS22135 22d4f4616f1187d184010f2f4e8ceac4 438 SUPERFAMILY SSF111369 62 177 1.83E-5 T 11-11-2016 Gferi_RS22135 22d4f4616f1187d184010f2f4e8ceac4 438 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 187 322 3.2E-13 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS22135 22d4f4616f1187d184010f2f4e8ceac4 438 SUPERFAMILY SSF56954 142 205 3.66E-7 T 11-11-2016 Gferi_RS22135 22d4f4616f1187d184010f2f4e8ceac4 438 Gene3D G3DSA:2.40.50.100 243 275 1.1E-10 T 11-11-2016 Gferi_RS22135 22d4f4616f1187d184010f2f4e8ceac4 438 Gene3D G3DSA:2.40.50.100 76 103 1.1E-10 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 SUPERFAMILY SSF82714 181 261 5.23E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 SUPERFAMILY SSF82866 288 487 1.44E-38 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 460 483 2.2E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 382 406 2.2E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 435 458 2.2E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.2E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 PRINTS PR00702 Acriflavin resistance protein family signature 354 375 2.2E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 Gene3D G3DSA:3.30.70.1430 39 130 6.4E-18 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 Pfam PF00873 AcrB/AcrD/AcrF family 1 1004 6.8E-184 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 Gene3D G3DSA:1.20.1640.10 283 498 3.4E-50 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 SUPERFAMILY SSF82714 701 785 2.75E-6 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 SUPERFAMILY SSF82693 39 128 2.96E-16 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 Gene3D G3DSA:3.30.2090.10 181 262 1.2E-13 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 Gene3D G3DSA:3.30.2090.10 700 787 5.5E-6 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 SUPERFAMILY SSF82866 788 1006 9.55E-45 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 SUPERFAMILY SSF82693 266 321 8.89E-15 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 SUPERFAMILY SSF82693 136 179 8.89E-15 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 Gene3D G3DSA:3.30.70.1430 557 623 2.5E-4 T 11-11-2016 Gferi_RS11395 688d6b632a9614d10348ea34fbbae0b0 1036 Gene3D G3DSA:1.10.3850.10 793 1005 7.5E-55 T 11-11-2016 Gferi_RS22000 2524fcc0b98c7dec5e5fce8e1c3783cc 307 Gene3D G3DSA:1.10.10.60 229 277 2.4E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22000 2524fcc0b98c7dec5e5fce8e1c3783cc 307 SUPERFAMILY SSF51182 22 85 1.05E-10 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS22000 2524fcc0b98c7dec5e5fce8e1c3783cc 307 SUPERFAMILY SSF46689 227 276 5.82E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22000 2524fcc0b98c7dec5e5fce8e1c3783cc 307 SMART SM00342 190 273 4.7E-13 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22000 2524fcc0b98c7dec5e5fce8e1c3783cc 307 Pfam PF12833 Helix-turn-helix domain 196 274 7.5E-15 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22000 2524fcc0b98c7dec5e5fce8e1c3783cc 307 Gene3D G3DSA:2.60.120.10 22 88 3.3E-14 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS22000 2524fcc0b98c7dec5e5fce8e1c3783cc 307 Pfam PF02311 AraC-like ligand binding domain 23 94 7.4E-9 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 SUPERFAMILY SSF55931 4 295 2.09E-113 T 11-11-2016 Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 474 36.675 T 11-11-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 SUPERFAMILY SSF89095 296 402 1.13E-29 T 11-11-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 Pfam PF02637 GatB domain 328 474 7.2E-54 T 11-11-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 Gene3D G3DSA:1.10.10.410 417 473 3.2E-5 T 11-11-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 141 155 - T 11-11-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 474 3.9E-174 T 11-11-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 Pfam PF02934 GatB/GatE catalytic domain 6 287 5.5E-113 T 11-11-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 Gferi_RS27175 edb07befadb32a8a63117284afeaf3ea 474 SMART SM00845 327 474 1.3E-73 T 11-11-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 77 5.4E-38 T 11-11-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 57 69 - T 11-11-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 SUPERFAMILY SSF50249 5 83 1.8E-33 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 Gene3D G3DSA:2.40.50.140 5 83 2.6E-37 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 77 1.0E-30 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 Pfam PF00366 Ribosomal protein S17 11 77 9.0E-35 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 4 82 27.0 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 PRINTS PR00973 Ribosomal protein S17 family signature 25 48 1.5E-13 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 PRINTS PR00973 Ribosomal protein S17 family signature 67 74 1.5E-13 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17440 f4a02577ad3f8db9a7dca638eaf47124 84 PRINTS PR00973 Ribosomal protein S17 family signature 57 67 1.5E-13 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 PIRSF PIRSF005962 1 395 3.2E-133 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 Gene3D G3DSA:3.30.70.360 185 301 4.5E-38 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 Pfam PF07687 Peptidase dimerisation domain 190 283 1.6E-11 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 Pfam PF01546 Peptidase family M20/M25/M40 75 387 7.0E-40 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 SUPERFAMILY SSF53187 302 394 2.63E-87 T 11-11-2016 Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 SUPERFAMILY SSF53187 4 201 2.63E-87 T 11-11-2016 Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 17 377 8.3E-112 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 Gene3D G3DSA:3.40.630.10 302 394 4.0E-103 T 11-11-2016 Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 Gene3D G3DSA:3.40.630.10 2 182 4.0E-103 T 11-11-2016 Gferi_RS19315 605206a49fae6a131e1ec52b9b127d4f 396 SUPERFAMILY SSF55031 185 303 3.53E-29 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 Pfam PF13375 RnfC Barrel sandwich hybrid domain 7 104 3.0E-35 T 11-11-2016 IPR026902 RnfC Barrel sandwich hybrid domain Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 Gene3D G3DSA:1.10.1060.10 324 440 1.9E-16 T 11-11-2016 Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 Pfam PF13237 4Fe-4S dicluster domain 365 418 1.4E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 Pfam PF10531 SLBB domain 289 336 3.4E-11 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 6 437 2.0E-171 T 11-11-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 407 418 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 130 275 3.8E-55 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 442 154.989 T 11-11-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 368 379 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 SUPERFAMILY SSF46548 326 438 1.31E-19 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS26220 e7d92bf8f27be38d175d88fa93aadd8d 442 SUPERFAMILY SSF142019 93 296 5.75E-61 T 11-11-2016 Gferi_RS08255 953d0887a6f430a52cc17ccd24177ed5 326 Pfam PF14525 AraC-binding-like domain 26 200 3.8E-13 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS08255 953d0887a6f430a52cc17ccd24177ed5 326 Pfam PF12833 Helix-turn-helix domain 237 318 2.6E-24 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS08255 953d0887a6f430a52cc17ccd24177ed5 326 Gene3D G3DSA:1.10.10.60 211 266 7.2E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08255 953d0887a6f430a52cc17ccd24177ed5 326 Gene3D G3DSA:1.10.10.60 267 319 6.5E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08255 953d0887a6f430a52cc17ccd24177ed5 326 SUPERFAMILY SSF46689 267 320 2.91E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08255 953d0887a6f430a52cc17ccd24177ed5 326 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 285 300 6.6E-9 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS08255 953d0887a6f430a52cc17ccd24177ed5 326 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 300 316 6.6E-9 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS08255 953d0887a6f430a52cc17ccd24177ed5 326 SMART SM00342 231 316 5.6E-26 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS06770 b62130a2c7eee22f23c046b227bab830 625 ProSitePatterns PS00211 ABC transporters family signature. 520 534 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS06770 b62130a2c7eee22f23c046b227bab830 625 SMART SM00382 408 580 5.0E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06770 b62130a2c7eee22f23c046b227bab830 625 SUPERFAMILY SSF52540 373 618 2.39E-90 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06770 b62130a2c7eee22f23c046b227bab830 625 Gene3D G3DSA:1.20.1560.10 40 365 1.2E-90 T 11-11-2016 Gferi_RS06770 b62130a2c7eee22f23c046b227bab830 625 Pfam PF00664 ABC transporter transmembrane region 55 336 6.5E-58 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS06770 b62130a2c7eee22f23c046b227bab830 625 Pfam PF00005 ABC transporter 400 548 3.7E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06770 b62130a2c7eee22f23c046b227bab830 625 Gene3D G3DSA:3.40.50.300 383 612 2.1E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06770 b62130a2c7eee22f23c046b227bab830 625 SUPERFAMILY SSF90123 37 366 5.23E-88 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS16860 dc4ad83d6177c7197e1390bbecc12892 194 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 14 175 1.1E-55 T 11-11-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Gferi_RS16860 dc4ad83d6177c7197e1390bbecc12892 194 SUPERFAMILY SSF117457 6 175 2.75E-62 T 11-11-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Gferi_RS16860 dc4ad83d6177c7197e1390bbecc12892 194 Gene3D G3DSA:3.20.130.10 4 175 1.4E-71 T 11-11-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Gferi_RS16860 dc4ad83d6177c7197e1390bbecc12892 194 Pfam PF05683 Fumarase C-terminus 9 176 1.3E-58 T 11-11-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Gferi_RS20520 e23736708d47829b1e5198433a02f4d8 394 SUPERFAMILY SSF53756 86 389 3.56E-22 T 11-11-2016 Gferi_RS20520 e23736708d47829b1e5198433a02f4d8 394 Pfam PF13692 Glycosyl transferases group 1 221 353 4.7E-10 T 11-11-2016 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 SUPERFAMILY SSF50615 10 94 8.44E-31 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 PIRSF PIRSF039088 1 503 1.6E-265 T 11-11-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 Gene3D G3DSA:3.40.50.300 95 371 3.7E-118 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 Gene3D G3DSA:2.40.30.20 1 93 6.1E-40 T 11-11-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 11-11-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 2.5E-72 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 SUPERFAMILY SSF47917 372 500 1.44E-47 T 11-11-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 27 92 7.6E-20 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 Gene3D G3DSA:1.20.150.20 372 500 9.1E-54 T 11-11-2016 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 496 7.2E-51 T 11-11-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 501 52.689 T 11-11-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 499 4.9E-258 T 11-11-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 Gferi_RS11025 9e65da15f5d7be1d839c1fb0a70cc84f 504 SUPERFAMILY SSF52540 96 370 1.41E-99 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02105 addb6775fd3bdd670d74be2a89586506 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 3.4E-11 T 11-11-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Gferi_RS02105 addb6775fd3bdd670d74be2a89586506 257 Gene3D G3DSA:3.40.50.300 3 252 1.2E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02105 addb6775fd3bdd670d74be2a89586506 257 Pfam PF00005 ABC transporter 21 179 3.7E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS02105 addb6775fd3bdd670d74be2a89586506 257 SMART SM00382 28 228 1.1E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS02105 addb6775fd3bdd670d74be2a89586506 257 SUPERFAMILY SSF52540 3 252 6.56E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25610 c3457629387fcd2d72fd514810c8cba5 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 150 1.7E-39 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS25610 c3457629387fcd2d72fd514810c8cba5 154 Gene3D G3DSA:3.40.930.10 6 150 6.4E-47 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS25610 c3457629387fcd2d72fd514810c8cba5 154 SUPERFAMILY SSF55804 6 150 8.24E-41 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 385 3.6E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 SMART SM00388 165 232 3.8E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 SMART SM00387 278 388 8.6E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 368 2.1E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 330 2.1E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 344 2.1E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 Gene3D G3DSA:3.30.565.10 218 387 2.2E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 SUPERFAMILY SSF55874 222 386 1.31E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 SUPERFAMILY SSF47384 150 233 1.96E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 Gene3D G3DSA:1.10.287.130 160 217 4.5E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 Pfam PF00512 His Kinase A (phospho-acceptor) domain 167 232 1.3E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 SMART SM00304 105 157 6.4E-6 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 SUPERFAMILY SSF158472 106 154 3.92E-6 T 11-11-2016 Gferi_RS21030 415c517fd331ef6ca8d5860222c88c86 389 Pfam PF00672 HAMP domain 87 152 5.2E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 SMART SM00304 212 264 0.0011 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 SMART SM00283 286 569 1.4E-29 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 Gene3D G3DSA:1.10.287.950 243 316 7.3E-5 T 11-11-2016 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 Gene3D G3DSA:1.10.287.950 317 526 5.0E-41 T 11-11-2016 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 354 568 1.9E-29 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 SUPERFAMILY SSF58104 232 266 1.1E-55 T 11-11-2016 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 SUPERFAMILY SSF58104 299 569 1.1E-55 T 11-11-2016 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 Pfam PF00672 HAMP domain 193 260 1.3E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS15010 def27aad59d4f89463dd5e06199954d2 570 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 185 4.6E-41 T 11-11-2016 IPR024478 4HB MCP domain Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 TIGRFAM TIGR00498 lexA: repressor LexA 2 201 3.1E-73 T 11-11-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 Gene3D G3DSA:1.10.10.10 2 66 2.5E-32 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 Hamap MF_00015 LexA repressor [lexA]. 1 201 31.62 T 11-11-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 Gene3D G3DSA:2.10.109.10 81 201 1.1E-42 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 156 168 2.2E-9 T 11-11-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 117 127 2.2E-9 T 11-11-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 128 139 2.2E-9 T 11-11-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 Pfam PF00717 Peptidase S24-like 120 186 1.6E-14 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 Pfam PF01726 LexA DNA binding domain 2 62 6.9E-25 T 11-11-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 SUPERFAMILY SSF51306 80 199 2.49E-34 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C Gferi_RS27190 3fb89328d3d6375b98d5666ac24cab4d 201 SUPERFAMILY SSF46785 1 67 6.83E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 Pfam PF01479 S4 domain 89 135 1.1E-19 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 197 4.4E-65 T 11-11-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 SMART SM01390 3 87 2.0E-25 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 Gene3D G3DSA:3.10.290.10 92 187 4.8E-29 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 87 4.0E-17 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 SUPERFAMILY SSF55174 5 197 1.65E-53 T 11-11-2016 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 SMART SM00363 88 145 3.2E-18 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 ProSitePatterns PS00632 Ribosomal protein S4 signature. 86 110 - T 11-11-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 197 29.548 T 11-11-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS22295 ad1f84aeae280bf860acd43b01731c86 199 Gene3D G3DSA:1.10.1050.10 2 91 6.4E-28 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Gferi_RS15795 e3fe536a82373e475a9c54b7b29122c7 257 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 246 1.5E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS15795 e3fe536a82373e475a9c54b7b29122c7 257 SUPERFAMILY SSF161098 10 247 2.43E-54 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS15795 e3fe536a82373e475a9c54b7b29122c7 257 Gene3D G3DSA:1.10.3720.10 3 253 4.2E-63 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22325 858e453e122fb025086c28f82a1bc547 349 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 55 308 7.1E-68 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS22325 858e453e122fb025086c28f82a1bc547 349 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 55 331 3.4E-79 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS22325 858e453e122fb025086c28f82a1bc547 349 PIRSF PIRSF006470 21 349 9.4E-83 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS21945 7fc0f322864cb7521524727c5e13c718 357 Gene3D G3DSA:2.40.390.10 234 338 9.3E-24 T 11-11-2016 IPR024071 Protein of unknown function DUF917, C-terminal Gferi_RS21945 7fc0f322864cb7521524727c5e13c718 357 Pfam PF06032 Protein of unknown function (DUF917) 12 328 4.4E-52 T 11-11-2016 IPR010318 Protein of unknown function DUF917 Gferi_RS21945 7fc0f322864cb7521524727c5e13c718 357 Gene3D G3DSA:3.40.1610.10 6 223 1.4E-28 T 11-11-2016 IPR027479 Protein of unknown function DUF917, N-terminal Gferi_RS21945 7fc0f322864cb7521524727c5e13c718 357 SUPERFAMILY SSF160991 6 338 1.44E-75 T 11-11-2016 Gferi_RS05165 f0f71e95676509078f3a3bcfe28897a1 342 Gene3D G3DSA:3.40.50.300 168 332 3.4E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05165 f0f71e95676509078f3a3bcfe28897a1 342 Pfam PF13521 AAA domain 169 328 8.7E-32 T 11-11-2016 Gferi_RS05165 f0f71e95676509078f3a3bcfe28897a1 342 Gene3D G3DSA:3.40.50.620 2 166 1.6E-28 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS05165 f0f71e95676509078f3a3bcfe28897a1 342 SUPERFAMILY SSF52374 4 168 6.29E-17 T 11-11-2016 Gferi_RS05165 f0f71e95676509078f3a3bcfe28897a1 342 SUPERFAMILY SSF52540 168 330 1.02E-20 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05165 f0f71e95676509078f3a3bcfe28897a1 342 PIRSF PIRSF004776 1 342 1.7E-79 T 11-11-2016 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 Gferi_RS05165 f0f71e95676509078f3a3bcfe28897a1 342 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 40 3.1E-7 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 SMART SM01130 1 296 1.0E-86 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 2.9E-21 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 2.9E-21 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 2.9E-21 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 2.9E-21 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 Pfam PF00701 Dihydrodipicolinate synthetase family 2 274 2.2E-70 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 SUPERFAMILY SSF51569 2 263 2.51E-76 T 11-11-2016 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 275 5.6E-62 T 11-11-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 164 - T 11-11-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 Gene3D G3DSA:3.20.20.70 1 283 7.5E-82 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS06675 afb0aea9b0568303ec3c1c41ea5ab31e 296 PIRSF PIRSF001365 1 272 9.9E-74 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 Gene3D G3DSA:3.40.50.300 16 169 5.4E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 23 590 4.8E-121 T 11-11-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 40 58 2.1E-5 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 19 39 2.1E-5 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 SUPERFAMILY SSF52540 18 170 9.59E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 Pfam PF02421 Ferrous iron transport protein B 18 165 8.4E-53 T 11-11-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 Pfam PF07670 Nucleoside recognition 493 592 3.4E-13 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 Pfam PF07670 Nucleoside recognition 337 427 1.3E-13 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS09075 a7c256a3db407af5ff5ec3a5d6bc2297 619 Pfam PF07664 Ferrous iron transport protein B C terminus 435 486 2.1E-11 T 11-11-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 SUPERFAMILY SSF58104 232 266 2.09E-59 T 11-11-2016 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 SUPERFAMILY SSF58104 299 569 2.09E-59 T 11-11-2016 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 Gene3D G3DSA:1.10.287.950 243 315 1.1E-5 T 11-11-2016 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 Gene3D G3DSA:1.10.287.950 316 547 9.6E-46 T 11-11-2016 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 185 1.0E-36 T 11-11-2016 IPR024478 4HB MCP domain Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 SMART SM00283 286 569 2.4E-33 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 SMART SM00304 212 264 6.1E-6 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 307 336 5.4E-7 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 420 449 5.4E-7 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 Pfam PF00672 HAMP domain 193 260 2.4E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS12675 5474873e42e77a251f8ff03009a42935 570 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 348 568 5.9E-32 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS00525 d420e7fa8064ff26b67e0dd63f25653c 226 SMART SM00448 4 116 5.5E-41 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00525 d420e7fa8064ff26b67e0dd63f25653c 226 SUPERFAMILY SSF52172 3 123 3.27E-37 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS00525 d420e7fa8064ff26b67e0dd63f25653c 226 SUPERFAMILY SSF46894 127 225 1.11E-29 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS00525 d420e7fa8064ff26b67e0dd63f25653c 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 224 7.6E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS00525 d420e7fa8064ff26b67e0dd63f25653c 226 Gene3D G3DSA:1.10.10.10 128 225 2.4E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00525 d420e7fa8064ff26b67e0dd63f25653c 226 Gene3D G3DSA:3.40.50.2300 2 124 1.1E-38 T 11-11-2016 Gferi_RS00525 d420e7fa8064ff26b67e0dd63f25653c 226 Pfam PF00072 Response regulator receiver domain 6 117 1.0E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00525 d420e7fa8064ff26b67e0dd63f25653c 226 SMART SM00862 151 224 2.1E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS09830 1a5b5aad4ed28542396322c99cd80dbd 716 Pfam PF07523 Bacterial Ig-like domain (group 3) 377 423 4.6E-6 T 11-11-2016 IPR022038 Bacterial Ig-like domain Gferi_RS09830 1a5b5aad4ed28542396322c99cd80dbd 716 Pfam PF07523 Bacterial Ig-like domain (group 3) 153 191 1.5E-4 T 11-11-2016 IPR022038 Bacterial Ig-like domain Gferi_RS09830 1a5b5aad4ed28542396322c99cd80dbd 716 Pfam PF05031 Iron Transport-associated domain 458 557 3.1E-10 T 11-11-2016 IPR006635 NEAT domain Gferi_RS09830 1a5b5aad4ed28542396322c99cd80dbd 716 Pfam PF05031 Iron Transport-associated domain 234 356 1.3E-12 T 11-11-2016 IPR006635 NEAT domain Gferi_RS09830 1a5b5aad4ed28542396322c99cd80dbd 716 SUPERFAMILY SSF158911 461 581 9.94E-9 T 11-11-2016 Gferi_RS09830 1a5b5aad4ed28542396322c99cd80dbd 716 SUPERFAMILY SSF158911 237 361 9.42E-12 T 11-11-2016 Gferi_RS06080 ec2f35ccf35c7dd417684d629c923e59 387 Gene3D G3DSA:3.20.20.70 36 369 1.8E-77 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS06080 ec2f35ccf35c7dd417684d629c923e59 387 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 297 380 1.1E-9 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS06080 ec2f35ccf35c7dd417684d629c923e59 387 Pfam PF13186 Iron-sulfur cluster-binding domain 297 352 7.3E-6 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS06080 ec2f35ccf35c7dd417684d629c923e59 387 SUPERFAMILY SSF102114 33 360 1.83E-73 T 11-11-2016 Gferi_RS06080 ec2f35ccf35c7dd417684d629c923e59 387 SMART SM00729 36 238 0.0018 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS06080 ec2f35ccf35c7dd417684d629c923e59 387 PIRSF PIRSF037420 19 387 1.7E-124 T 11-11-2016 IPR017200 Coenzyme PQQ synthesis protein E Gferi_RS06080 ec2f35ccf35c7dd417684d629c923e59 387 Pfam PF04055 Radical SAM superfamily 41 190 2.9E-24 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS06080 ec2f35ccf35c7dd417684d629c923e59 387 Pfam PF13353 4Fe-4S single cluster domain 43 147 6.5E-12 T 11-11-2016 Gferi_RS23765 f721d65dc00ff17828a9c55273ff72bf 191 SUPERFAMILY SSF53335 23 180 1.03E-28 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23765 f721d65dc00ff17828a9c55273ff72bf 191 Pfam PF08241 Methyltransferase domain 39 136 3.4E-16 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Gferi_RS23765 f721d65dc00ff17828a9c55273ff72bf 191 Gene3D G3DSA:3.40.50.150 26 143 4.9E-29 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 Pfam PF00005 ABC transporter 20 191 8.1E-20 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 Pfam PF00005 ABC transporter 348 477 6.9E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 SMART SM00382 357 522 4.9E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 SMART SM00382 28 236 2.8E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 Gene3D G3DSA:3.40.50.300 335 564 8.8E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 Gene3D G3DSA:3.40.50.300 6 106 3.5E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 Gene3D G3DSA:3.40.50.300 139 276 3.5E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 SUPERFAMILY SSF52540 6 244 3.97E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 ProSitePatterns PS00211 ABC transporters family signature. 449 463 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 Pfam PF12848 ABC transporter 230 318 7.1E-22 T 11-11-2016 IPR032781 ABC-transporter extension domain Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 Pfam PF16326 ABC transporter C-terminal domain 573 627 1.4E-8 T 11-11-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Gferi_RS06590 aa7cfc1da094b7c0860ddddb14304157 635 SUPERFAMILY SSF52540 326 550 1.54E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23030 e8e74f23e95fa654ad7e009503be39c1 210 Gene3D G3DSA:3.40.50.150 6 195 1.6E-30 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23030 e8e74f23e95fa654ad7e009503be39c1 210 Pfam PF08241 Methyltransferase domain 36 131 5.1E-18 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Gferi_RS23030 e8e74f23e95fa654ad7e009503be39c1 210 SUPERFAMILY SSF53335 14 209 1.82E-29 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 Pfam PF02540 NAD synthase 204 279 3.4E-6 T 11-11-2016 IPR022310 NAD/GMP synthase Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 Pfam PF00117 Glutamine amidotransferase class-I 9 189 2.5E-43 T 11-11-2016 IPR017926 Glutamine amidotransferase Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 SUPERFAMILY SSF52317 5 199 5.68E-58 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 Gene3D G3DSA:3.40.50.620 212 386 6.8E-62 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 48 62 5.6E-5 T 11-11-2016 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 7 21 5.6E-5 T 11-11-2016 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 78 94 5.6E-5 T 11-11-2016 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 201 511 2.9E-158 T 11-11-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 SUPERFAMILY SSF52402 182 433 3.77E-59 T 11-11-2016 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 Pfam PF00958 GMP synthase C terminal domain 419 510 5.5E-45 T 11-11-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 Gene3D G3DSA:3.30.300.10 387 511 2.4E-53 T 11-11-2016 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 Gene3D G3DSA:3.40.50.880 3 211 1.6E-66 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 PRINTS PR00096 Glutamine amidotransferase superfamily signature 78 89 4.1E-6 T 11-11-2016 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 PRINTS PR00096 Glutamine amidotransferase superfamily signature 51 60 4.1E-6 T 11-11-2016 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 4.1E-6 T 11-11-2016 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 4 511 55.994 T 11-11-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 Gferi_RS10205 2da20af840c9f636c5b7e74fa58bf1fa 511 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 7 193 1.2E-80 T 11-11-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 222 244 - T 11-11-2016 Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 241 1.1E-27 T 11-11-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 268 2.5E-68 T 11-11-2016 IPR000150 Cof protein GO:0016787 Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 SUPERFAMILY SSF56784 1 272 4.73E-79 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 Gene3D G3DSA:3.30.1240.10 85 187 2.9E-9 T 11-11-2016 Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 11-11-2016 IPR000150 Cof protein GO:0016787 Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 268 6.2E-74 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 Gene3D G3DSA:3.40.50.1000 188 273 3.8E-60 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS24500 9b09df6b938aae41ac0eb85024413c54 273 Gene3D G3DSA:3.40.50.1000 1 73 3.8E-60 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS01955 56aa0873dc329c37a96f8c9d670af77c 367 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 8 361 1.3E-119 T 11-11-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 Gferi_RS01955 56aa0873dc329c37a96f8c9d670af77c 367 TIGRFAM TIGR02615 spoVE: stage V sporulation protein E 8 360 7.1E-142 T 11-11-2016 IPR013438 Sporulation stage V, protein E Gferi_RS01955 56aa0873dc329c37a96f8c9d670af77c 367 Pfam PF01098 Cell cycle protein 11 362 6.4E-113 T 11-11-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 Gferi_RS16610 13f92e46698e3e80956125ab4a75fdd7 520 Pfam PF02541 Ppx/GppA phosphatase family 28 312 1.2E-30 T 11-11-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Gferi_RS16610 13f92e46698e3e80956125ab4a75fdd7 520 Pfam PF01966 HD domain 343 460 3.0E-11 T 11-11-2016 IPR006674 HD domain Gferi_RS16610 13f92e46698e3e80956125ab4a75fdd7 520 SUPERFAMILY SSF53067 140 312 3.77E-18 T 11-11-2016 Gferi_RS16610 13f92e46698e3e80956125ab4a75fdd7 520 SUPERFAMILY SSF109604 330 513 4.4E-41 T 11-11-2016 Gferi_RS16610 13f92e46698e3e80956125ab4a75fdd7 520 Gene3D G3DSA:1.10.3210.10 341 461 7.8E-10 T 11-11-2016 IPR006674 HD domain Gferi_RS16610 13f92e46698e3e80956125ab4a75fdd7 520 Gene3D G3DSA:3.30.420.40 3 129 1.7E-33 T 11-11-2016 Gferi_RS16610 13f92e46698e3e80956125ab4a75fdd7 520 SUPERFAMILY SSF53067 10 131 1.42E-27 T 11-11-2016 Gferi_RS16610 13f92e46698e3e80956125ab4a75fdd7 520 Gene3D G3DSA:3.30.420.150 141 312 4.2E-17 T 11-11-2016 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 Gene3D G3DSA:1.10.10.60 250 297 5.6E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 Pfam PF02311 AraC-like ligand binding domain 33 107 2.9E-11 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 SUPERFAMILY SSF46689 194 245 5.02E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 264 279 9.4E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 295 9.4E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 SUPERFAMILY SSF51182 39 134 8.75E-12 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 SUPERFAMILY SSF46689 250 297 1.08E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 Pfam PF12833 Helix-turn-helix domain 217 297 2.3E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 Gene3D G3DSA:2.60.120.10 37 96 1.9E-13 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 Gene3D G3DSA:1.10.10.60 191 248 2.0E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 SMART SM00342 211 295 1.5E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS05035 7fe2275aa923afb45cfb549c1ae60ed2 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 248 291 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS17800 fcd665c54b2c752c7ffddc1da033b0e4 282 Gene3D G3DSA:1.10.443.10 102 266 1.2E-48 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS17800 fcd665c54b2c752c7ffddc1da033b0e4 282 Gene3D G3DSA:1.10.150.130 15 81 7.2E-5 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal Gferi_RS17800 fcd665c54b2c752c7ffddc1da033b0e4 282 Pfam PF00589 Phage integrase family 102 261 1.9E-42 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS17800 fcd665c54b2c752c7ffddc1da033b0e4 282 SUPERFAMILY SSF56349 10 266 2.03E-55 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS17800 fcd665c54b2c752c7ffddc1da033b0e4 282 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 4 85 1.2E-20 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Gferi_RS04960 fcd665c54b2c752c7ffddc1da033b0e4 282 Gene3D G3DSA:1.10.443.10 102 266 1.2E-48 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS04960 fcd665c54b2c752c7ffddc1da033b0e4 282 Gene3D G3DSA:1.10.150.130 15 81 7.2E-5 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal Gferi_RS04960 fcd665c54b2c752c7ffddc1da033b0e4 282 Pfam PF00589 Phage integrase family 102 261 1.9E-42 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS04960 fcd665c54b2c752c7ffddc1da033b0e4 282 SUPERFAMILY SSF56349 10 266 2.03E-55 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS04960 fcd665c54b2c752c7ffddc1da033b0e4 282 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 4 85 1.2E-20 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Pfam PF01588 Putative tRNA binding domain 46 151 2.4E-19 T 11-11-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Gene3D G3DSA:3.30.56.20 409 482 1.0E-27 T 11-11-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Gene3D G3DSA:3.50.40.10 208 403 4.9E-82 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 SUPERFAMILY SSF54991 700 797 1.83E-31 T 11-11-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 SMART SM00874 410 478 3.2E-29 T 11-11-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Gene3D G3DSA:2.40.50.140 42 159 5.9E-43 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 797 2.4E-265 T 11-11-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 SUPERFAMILY SSF50249 37 198 3.18E-44 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Gene3D G3DSA:3.30.930.10 496 692 8.0E-56 T 11-11-2016 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 SUPERFAMILY SSF46955 411 482 9.16E-22 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 SMART SM00873 220 393 3.0E-86 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 791 42.748 T 11-11-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Gene3D G3DSA:3.30.56.10 161 190 1.6E-21 T 11-11-2016 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Gene3D G3DSA:3.30.56.10 1 39 1.6E-21 T 11-11-2016 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 SUPERFAMILY SSF55681 474 692 4.97E-47 T 11-11-2016 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Pfam PF03483 B3/4 domain 221 389 4.9E-67 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Gene3D G3DSA:3.30.70.380 706 797 2.4E-32 T 11-11-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Pfam PF03147 Ferredoxin-fold anticodon binding domain 704 797 4.2E-30 T 11-11-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 SUPERFAMILY SSF56037 208 405 7.59E-69 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 SMART SM00896 704 797 1.0E-42 T 11-11-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 Gferi_RS04060 6546f2f3c028ae00bc72d459b43be0ee 798 Pfam PF03484 tRNA synthetase B5 domain 413 478 1.5E-22 T 11-11-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 SUPERFAMILY SSF56770 40 310 1.07E-50 T 11-11-2016 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 Gene3D G3DSA:4.10.480.10 256 308 7.5E-6 T 11-11-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 49 209 2.9E-25 T 11-11-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 214 231 2.8E-9 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 288 301 2.8E-9 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 34 56 2.8E-9 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 189 212 2.8E-9 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 3 306 2.1E-53 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 PIRSF PIRSF000310 1 312 8.7E-72 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS20095 e028f9456d33289d28d12c4a3375cb23 313 Gene3D G3DSA:3.40.50.700 37 223 5.0E-41 T 11-11-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 SUPERFAMILY SSF52540 140 384 3.04E-78 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 Gene3D G3DSA:3.40.50.2300 1 130 1.6E-41 T 11-11-2016 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 Pfam PF00072 Response regulator receiver domain 4 113 2.9E-33 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 SUPERFAMILY SSF52172 1 186 6.12E-50 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 Gene3D G3DSA:1.10.10.60 400 444 4.5E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 SMART SM00448 2 113 1.6E-41 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 Pfam PF02954 Bacterial regulatory protein, Fis family 405 445 6.4E-16 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 SUPERFAMILY SSF46689 354 447 2.19E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 428 448 1.0E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 411 428 1.0E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 Pfam PF00158 Sigma-54 interaction domain 141 308 1.5E-73 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 SMART SM00382 161 304 7.2E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 Gene3D G3DSA:1.10.8.60 314 387 3.4E-25 T 11-11-2016 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS05930 978eea08b568f59d303a55172aea609a 448 Gene3D G3DSA:3.40.50.300 139 313 1.7E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09865 67789ecc6ab1f07b25aa4826cc6d56c7 256 Gene3D G3DSA:2.40.30.10 7 97 4.0E-22 T 11-11-2016 Gferi_RS09865 67789ecc6ab1f07b25aa4826cc6d56c7 256 SUPERFAMILY SSF52343 96 255 3.46E-23 T 11-11-2016 Gferi_RS09865 67789ecc6ab1f07b25aa4826cc6d56c7 256 SUPERFAMILY SSF63380 3 99 1.0E-14 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Gferi_RS09865 67789ecc6ab1f07b25aa4826cc6d56c7 256 PIRSF PIRSF006816 1 256 3.4E-48 T 11-11-2016 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Gferi_RS09865 67789ecc6ab1f07b25aa4826cc6d56c7 256 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 218 254 9.3E-17 T 11-11-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Gferi_RS09865 67789ecc6ab1f07b25aa4826cc6d56c7 256 Gene3D G3DSA:3.40.50.80 106 216 1.6E-14 T 11-11-2016 Gferi_RS09865 67789ecc6ab1f07b25aa4826cc6d56c7 256 Gene3D G3DSA:2.10.240.10 218 255 2.7E-18 T 11-11-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Gferi_RS24070 459e693eb7b5c1e16c04f0e95fc87da7 141 Pfam PF00571 CBS domain 3 54 1.2E-11 T 11-11-2016 IPR000644 CBS domain Gferi_RS24070 459e693eb7b5c1e16c04f0e95fc87da7 141 Pfam PF00571 CBS domain 68 117 7.9E-14 T 11-11-2016 IPR000644 CBS domain Gferi_RS24070 459e693eb7b5c1e16c04f0e95fc87da7 141 SMART SM00116 10 58 1.2E-4 T 11-11-2016 IPR000644 CBS domain Gferi_RS24070 459e693eb7b5c1e16c04f0e95fc87da7 141 SMART SM00116 74 121 2.1E-10 T 11-11-2016 IPR000644 CBS domain Gferi_RS24070 459e693eb7b5c1e16c04f0e95fc87da7 141 Gene3D G3DSA:3.20.20.70 2 124 2.0E-36 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS24070 459e693eb7b5c1e16c04f0e95fc87da7 141 SUPERFAMILY SSF54631 1 117 1.77E-35 T 11-11-2016 Gferi_RS02260 889498603f24891e5452cbcb7de9f640 232 Pfam PF01219 Prokaryotic diacylglycerol kinase 12 112 4.3E-34 T 11-11-2016 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 Gferi_RS02260 889498603f24891e5452cbcb7de9f640 232 SMART SM00014 89 228 0.0048 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS02260 889498603f24891e5452cbcb7de9f640 232 Gene3D G3DSA:1.20.144.10 153 229 1.4E-11 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS02260 889498603f24891e5452cbcb7de9f640 232 Gene3D G3DSA:1.10.3830.10 2 116 4.6E-40 T 11-11-2016 Gferi_RS02260 889498603f24891e5452cbcb7de9f640 232 SUPERFAMILY SSF48317 47 230 1.11E-18 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS02260 889498603f24891e5452cbcb7de9f640 232 Pfam PF01569 PAP2 superfamily 158 231 8.2E-12 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS19815 ca6a4a8a6a3662f7e5bf56bbe67163fe 347 Pfam PF13407 Periplasmic binding protein domain 39 312 3.3E-59 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS19815 ca6a4a8a6a3662f7e5bf56bbe67163fe 347 SUPERFAMILY SSF53822 38 339 5.65E-79 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS19815 ca6a4a8a6a3662f7e5bf56bbe67163fe 347 Gene3D G3DSA:3.40.50.2300 38 175 1.0E-34 T 11-11-2016 Gferi_RS19815 ca6a4a8a6a3662f7e5bf56bbe67163fe 347 Gene3D G3DSA:3.40.50.2300 176 324 3.9E-41 T 11-11-2016 Gferi_RS14920 ca6a4a8a6a3662f7e5bf56bbe67163fe 347 Pfam PF13407 Periplasmic binding protein domain 39 312 3.3E-59 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS14920 ca6a4a8a6a3662f7e5bf56bbe67163fe 347 SUPERFAMILY SSF53822 38 339 5.65E-79 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS14920 ca6a4a8a6a3662f7e5bf56bbe67163fe 347 Gene3D G3DSA:3.40.50.2300 38 175 1.0E-34 T 11-11-2016 Gferi_RS14920 ca6a4a8a6a3662f7e5bf56bbe67163fe 347 Gene3D G3DSA:3.40.50.2300 176 324 3.9E-41 T 11-11-2016 Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 246 7.4E-101 T 11-11-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 3.1E-23 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 3.1E-23 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 3.1E-23 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 3.1E-23 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 SUPERFAMILY SSF55920 1 246 2.36E-87 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 Gene3D G3DSA:3.90.230.10 1 246 3.1E-90 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 Hamap MF_01974 Methionine aminopeptidase [map]. 2 248 42.249 T 11-11-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 11-11-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 Gferi_RS17505 674963e6a5c3670dedfe3d9965a31292 248 Pfam PF00557 Metallopeptidase family M24 13 239 3.1E-51 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 Gene3D G3DSA:3.90.950.20 247 408 6.8E-58 T 11-11-2016 IPR008136 CinA, C-terminal Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 161 6.9E-29 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 SUPERFAMILY SSF142433 248 408 6.67E-56 T 11-11-2016 IPR008136 CinA, C-terminal Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 Pfam PF00994 Probable molybdopterin binding domain 4 168 3.2E-35 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 PIRSF PIRSF006728 1 409 2.8E-163 T 11-11-2016 IPR008135 Competence-induced protein CinA Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 Gene3D G3DSA:3.40.980.10 1 208 4.3E-35 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 SUPERFAMILY SSF53218 1 204 7.59E-43 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 3 407 4.7E-133 T 11-11-2016 IPR008135 Competence-induced protein CinA Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 SMART SM00852 4 171 1.3E-41 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 Pfam PF02464 Competence-damaged protein 255 407 7.0E-57 T 11-11-2016 IPR008136 CinA, C-terminal Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 261 405 3.1E-47 T 11-11-2016 IPR008136 CinA, C-terminal Gferi_RS00635 5dbf016cc8740e3e5f14357a699ee50b 409 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 409 165.172 T 11-11-2016 IPR008135 Competence-induced protein CinA Gferi_RS10665 d7eae2098a938dc0b9e5a9722057d80b 325 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 204 220 - T 11-11-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Gferi_RS10665 d7eae2098a938dc0b9e5a9722057d80b 325 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 324 1.6E-150 T 11-11-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 Gferi_RS10665 d7eae2098a938dc0b9e5a9722057d80b 325 SUPERFAMILY SSF75620 2 323 6.54E-131 T 11-11-2016 Gferi_RS10665 d7eae2098a938dc0b9e5a9722057d80b 325 SMART SM00937 44 154 1.3E-47 T 11-11-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 Gferi_RS10665 d7eae2098a938dc0b9e5a9722057d80b 325 Gene3D G3DSA:1.20.58.410 2 74 2.0E-13 T 11-11-2016 Gferi_RS10665 d7eae2098a938dc0b9e5a9722057d80b 325 Pfam PF00472 RF-1 domain 188 297 1.1E-42 T 11-11-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Gferi_RS10665 d7eae2098a938dc0b9e5a9722057d80b 325 Gene3D G3DSA:3.30.160.20 187 265 4.8E-38 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain Gferi_RS10665 d7eae2098a938dc0b9e5a9722057d80b 325 Pfam PF03462 PCRF domain 3 179 3.9E-55 T 11-11-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 Pfam PF00213 ATP synthase delta (OSCP) subunit 6 175 3.1E-53 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 Gene3D G3DSA:1.10.520.20 6 105 6.0E-25 T 11-11-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 6 175 3.8E-43 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 SUPERFAMILY SSF47928 3 106 1.16E-25 T 11-11-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 Hamap MF_01416 ATP synthase subunit delta [atpD]. 1 177 21.282 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 11-11-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.5E-28 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.5E-28 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 PRINTS PR00125 ATP synthase delta subunit signature 5 24 1.5E-28 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.5E-28 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 Gferi_RS11030 3e5f46af24a2ed2a831ef06d9e3df20b 180 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.5E-28 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 Gferi_RS16890 8dd7a6f545a806f67bc4ffd63f1a20f4 134 Gene3D G3DSA:3.10.180.10 1 132 4.0E-46 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS16890 8dd7a6f545a806f67bc4ffd63f1a20f4 134 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 5 132 6.5E-50 T 11-11-2016 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|Reactome: R-HSA-71032 Gferi_RS16890 8dd7a6f545a806f67bc4ffd63f1a20f4 134 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 117 1.3E-24 T 11-11-2016 Gferi_RS16890 8dd7a6f545a806f67bc4ffd63f1a20f4 134 SUPERFAMILY SSF54593 1 133 1.33E-37 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS26355 1369105aade019bc598e62885dd43300 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 102 8.2E-41 T 11-11-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26355 1369105aade019bc598e62885dd43300 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 28.475 T 11-11-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26355 1369105aade019bc598e62885dd43300 103 SUPERFAMILY SSF141091 1 101 2.35E-40 T 11-11-2016 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26355 1369105aade019bc598e62885dd43300 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 11-11-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS26355 1369105aade019bc598e62885dd43300 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 3.1E-45 T 11-11-2016 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS25140 0f17b962cc52ad2fadb1ee355b73c80d 388 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 6 301 5.2E-77 T 11-11-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 Gferi_RS25140 0f17b962cc52ad2fadb1ee355b73c80d 388 Pfam PF02374 Anion-transporting ATPase 3 301 4.5E-84 T 11-11-2016 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 Gferi_RS25140 0f17b962cc52ad2fadb1ee355b73c80d 388 Gene3D G3DSA:3.40.50.300 3 159 3.5E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25140 0f17b962cc52ad2fadb1ee355b73c80d 388 Gene3D G3DSA:3.40.50.300 192 286 3.5E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25140 0f17b962cc52ad2fadb1ee355b73c80d 388 SUPERFAMILY SSF52540 1 293 1.14E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10975 24b5f14945256fc25abf74a50eb22b01 418 SUPERFAMILY SSF55205 3 416 4.91E-141 T 11-11-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Gferi_RS10975 24b5f14945256fc25abf74a50eb22b01 418 Gene3D G3DSA:3.65.10.10 21 219 2.0E-65 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS10975 24b5f14945256fc25abf74a50eb22b01 418 Gene3D G3DSA:3.65.10.10 220 415 3.5E-64 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS10975 24b5f14945256fc25abf74a50eb22b01 418 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 47.144 T 11-11-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS10975 24b5f14945256fc25abf74a50eb22b01 418 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3 415 5.7E-181 T 11-11-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS10975 24b5f14945256fc25abf74a50eb22b01 418 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 406 2.4E-111 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SMART SM00387 649 763 6.9E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Gene3D G3DSA:1.10.287.130 528 600 6.6E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 706 716 4.4E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 747 760 4.4E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 723 741 4.4E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 688 702 4.4E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SUPERFAMILY SSF55874 593 760 2.49E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Pfam PF13185 GAF domain 281 414 3.9E-13 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Gene3D G3DSA:3.40.50.2300 917 1037 1.8E-17 T 11-11-2016 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Gene3D G3DSA:3.30.450.40 275 417 2.1E-20 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SMART SM00065 282 426 1.0E-8 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SUPERFAMILY SSF52172 919 1043 3.42E-16 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Gene3D G3DSA:3.30.565.10 605 759 5.8E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SUPERFAMILY SSF52172 798 913 1.71E-23 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Pfam PF00072 Response regulator receiver domain 1065 1176 8.6E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Pfam PF00072 Response regulator receiver domain 922 1022 5.1E-14 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Pfam PF00072 Response regulator receiver domain 799 907 1.2E-15 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SUPERFAMILY SSF55781 253 416 1.37E-26 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 171 1.2E-13 T 11-11-2016 IPR024478 4HB MCP domain Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SUPERFAMILY SSF52172 1061 1181 1.71E-41 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Pfam PF00512 His Kinase A (phospho-acceptor) domain 537 604 2.8E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SMART SM00388 536 604 6.0E-22 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SMART SM00448 919 1031 2.7E-9 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SMART SM00448 797 907 5.1E-20 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SMART SM00448 1063 1176 2.0E-40 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 649 761 5.4E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Gene3D G3DSA:3.40.50.2300 1061 1181 3.8E-44 T 11-11-2016 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Gene3D G3DSA:3.40.50.2300 794 916 6.2E-26 T 11-11-2016 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 SUPERFAMILY SSF47384 523 606 2.35E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15045 51763f9ccafe327d84d55fc5e520a6e8 1182 Pfam PF00672 HAMP domain 193 261 1.7E-6 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14935 a369f28d6dd845591a5d9f88a400d6ce 205 Pfam PF04607 Region found in RelA / SpoT proteins 49 169 8.3E-39 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 Gferi_RS14935 a369f28d6dd845591a5d9f88a400d6ce 205 SMART SM00954 49 172 1.2E-49 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 Gferi_RS14935 a369f28d6dd845591a5d9f88a400d6ce 205 Gene3D G3DSA:1.10.287.860 155 204 5.7E-19 T 11-11-2016 Gferi_RS14935 a369f28d6dd845591a5d9f88a400d6ce 205 Gene3D G3DSA:3.30.460.10 10 152 4.4E-42 T 11-11-2016 Gferi_RS14935 a369f28d6dd845591a5d9f88a400d6ce 205 SUPERFAMILY SSF81301 9 201 5.23E-60 T 11-11-2016 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Pfam PF00013 KH domain 555 610 2.4E-10 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SMART SM00322 549 614 1.1E-12 T 11-11-2016 IPR004087 K Homology domain GO:0003676 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Gene3D G3DSA:3.30.230.70 6 223 1.2E-83 T 11-11-2016 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Gene3D G3DSA:3.30.230.70 312 540 2.8E-87 T 11-11-2016 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SUPERFAMILY SSF54791 552 637 1.4E-22 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Pfam PF01138 3' exoribonuclease family, domain 1 320 453 1.8E-19 T 11-11-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Pfam PF01138 3' exoribonuclease family, domain 1 11 142 1.5E-20 T 11-11-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 1 690 31.129 T 11-11-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SUPERFAMILY SSF50249 617 697 6.71E-21 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 240 317 2.0E-13 T 11-11-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 688 0.0 T 11-11-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SUPERFAMILY SSF46915 236 317 9.94E-19 T 11-11-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Pfam PF03725 3' exoribonuclease family, domain 2 146 208 9.2E-13 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Pfam PF03725 3' exoribonuclease family, domain 2 456 526 1.4E-5 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SUPERFAMILY SSF55666 143 233 2.88E-28 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SUPERFAMILY SSF54211 9 142 8.1E-48 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Pfam PF00575 S1 RNA binding domain 615 687 6.3E-19 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SMART SM00316 617 687 3.9E-26 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Gene3D G3DSA:3.30.1370.10 548 616 1.0E-25 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 PIRSF PIRSF005499 1 701 3.8E-301 T 11-11-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Gene3D G3DSA:1.10.10.400 224 311 3.0E-27 T 11-11-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SUPERFAMILY SSF55666 447 546 8.83E-30 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 Gene3D G3DSA:2.40.50.140 617 692 2.4E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00690 dec8fabbdf8bef6b49ed07c9f176bfa0 701 SUPERFAMILY SSF54211 291 484 2.43E-48 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS15545 fd41f2c8ee4f78413536b2c88f382bcf 244 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 242 6.6E-98 T 11-11-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS15545 fd41f2c8ee4f78413536b2c88f382bcf 244 Gene3D G3DSA:3.40.50.1360 1 242 2.1E-102 T 11-11-2016 Gferi_RS15545 fd41f2c8ee4f78413536b2c88f382bcf 244 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 10 228 2.3E-23 T 11-11-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 Gferi_RS15545 fd41f2c8ee4f78413536b2c88f382bcf 244 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 241 43.724 T 11-11-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS15545 fd41f2c8ee4f78413536b2c88f382bcf 244 SUPERFAMILY SSF100950 1 242 5.58E-97 T 11-11-2016 Gferi_RS15545 fd41f2c8ee4f78413536b2c88f382bcf 244 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 120 138 - T 11-11-2016 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS23660 49cd4d1d7a730573dc30773aa1e64bc3 823 Gene3D G3DSA:3.20.20.80 786 818 9.7E-23 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS23660 49cd4d1d7a730573dc30773aa1e64bc3 823 Gene3D G3DSA:3.20.20.80 20 230 9.7E-23 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS23660 49cd4d1d7a730573dc30773aa1e64bc3 823 SUPERFAMILY SSF49785 339 440 3.23E-5 T 11-11-2016 IPR008979 Galactose-binding domain-like Gferi_RS23660 49cd4d1d7a730573dc30773aa1e64bc3 823 Pfam PF00704 Glycosyl hydrolases family 18 55 290 1.9E-14 T 11-11-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 Gferi_RS23660 49cd4d1d7a730573dc30773aa1e64bc3 823 SUPERFAMILY SSF51445 21 228 7.39E-22 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS23660 49cd4d1d7a730573dc30773aa1e64bc3 823 SUPERFAMILY SSF51445 783 816 7.39E-22 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS17575 6a5f3672c3e8d30c65c156784f8af636 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.2E-47 T 11-11-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17575 6a5f3672c3e8d30c65c156784f8af636 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 11-11-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 Gferi_RS17575 6a5f3672c3e8d30c65c156784f8af636 130 SUPERFAMILY SSF54211 5 130 1.67E-47 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS17575 6a5f3672c3e8d30c65c156784f8af636 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 34.674 T 11-11-2016 IPR023035 Ribosomal protein S9, bacterial/plastid Gferi_RS17575 6a5f3672c3e8d30c65c156784f8af636 130 Gene3D G3DSA:3.30.230.10 5 130 4.4E-51 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS13360 40d6fc17e4767c44595853ec27dd06f5 175 Pfam PF14584 Protein of unknown function (DUF4446) 15 162 3.1E-50 T 11-11-2016 IPR027981 Protein of unknown function DUF4446 Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 SUPERFAMILY SSF54184 355 414 2.49E-5 T 11-11-2016 Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 SUPERFAMILY SSF56112 3 265 8.23E-85 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 SMART SM00220 10 271 4.0E-71 T 11-11-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 130 142 - T 11-11-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 Pfam PF03793 PASTA domain 421 483 2.7E-11 T 11-11-2016 IPR005543 PASTA domain Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 Pfam PF03793 PASTA domain 492 553 1.1E-11 T 11-11-2016 IPR005543 PASTA domain Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 Pfam PF03793 PASTA domain 355 416 2.5E-14 T 11-11-2016 IPR005543 PASTA domain Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 Pfam PF00069 Protein kinase domain 10 265 1.9E-59 T 11-11-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 SMART SM00740 417 483 3.3E-9 T 11-11-2016 IPR005543 PASTA domain Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 SMART SM00740 486 553 1.8E-10 T 11-11-2016 IPR005543 PASTA domain Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 SMART SM00740 350 416 5.7E-14 T 11-11-2016 IPR005543 PASTA domain Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 Gene3D G3DSA:1.10.510.10 77 266 4.8E-61 T 11-11-2016 Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 16 39 - T 11-11-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 Gferi_RS01680 2a53e83d299e114b53ff818e997886c5 649 Gene3D G3DSA:3.30.200.20 2 76 6.6E-27 T 11-11-2016 Gferi_RS09965 4b665fb9860d04dabfb1e34fccf491d0 418 Gene3D G3DSA:3.40.640.10 35 265 6.3E-91 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS09965 4b665fb9860d04dabfb1e34fccf491d0 418 SUPERFAMILY SSF53383 2 412 6.47E-160 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS09965 4b665fb9860d04dabfb1e34fccf491d0 418 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 4 412 46.973 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Gferi_RS09965 4b665fb9860d04dabfb1e34fccf491d0 418 Pfam PF00464 Serine hydroxymethyltransferase 5 381 1.1E-151 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Gferi_RS09965 4b665fb9860d04dabfb1e34fccf491d0 418 PIRSF PIRSF000412 1 412 3.9E-152 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Gferi_RS09965 4b665fb9860d04dabfb1e34fccf491d0 418 Gene3D G3DSA:3.90.1150.10 266 411 1.1E-57 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 SUPERFAMILY SSF50494 42 247 4.51E-61 T 11-11-2016 IPR009003 Peptidase S1, PA clan Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 Gene3D G3DSA:2.40.10.10 33 142 4.5E-28 T 11-11-2016 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 Pfam PF13365 Trypsin-like peptidase domain 76 216 3.5E-36 T 11-11-2016 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 SMART SM00228 266 335 1.7E-10 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 Pfam PF13180 PDZ domain 267 344 1.5E-17 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 SUPERFAMILY SSF50156 233 344 1.45E-21 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 Gene3D G3DSA:2.40.10.10 143 254 8.5E-43 T 11-11-2016 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 Gene3D G3DSA:2.30.42.10 255 349 6.5E-24 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 PRINTS PR00834 HtrA/DegQ protease family signature 293 305 2.9E-39 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 PRINTS PR00834 HtrA/DegQ protease family signature 187 204 2.9E-39 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 PRINTS PR00834 HtrA/DegQ protease family signature 148 172 2.9E-39 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 PRINTS PR00834 HtrA/DegQ protease family signature 108 128 2.9E-39 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 PRINTS PR00834 HtrA/DegQ protease family signature 209 226 2.9E-39 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS11880 e9d53e28ef39e9512409a71b8e804296 350 PRINTS PR00834 HtrA/DegQ protease family signature 85 97 2.9E-39 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 SUPERFAMILY SSF63520 283 394 1.14E-19 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Gene3D G3DSA:3.40.930.10 494 633 1.4E-24 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Pfam PF05043 Mga helix-turn-helix domain 64 159 7.4E-9 T 11-11-2016 IPR007737 Mga helix-turn-helix domain Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Gene3D G3DSA:1.10.10.10 4 61 6.8E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Pfam PF08279 HTH domain 7 59 5.8E-8 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 SUPERFAMILY SSF55804 495 634 3.14E-23 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 SUPERFAMILY SSF63520 185 269 7.85E-13 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 542 558 - T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Pfam PF00874 PRD domain 298 389 7.7E-14 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Pfam PF00874 PRD domain 188 268 2.2E-12 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 501 631 5.6E-21 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Gene3D G3DSA:1.10.1790.10 287 393 8.3E-19 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Gene3D G3DSA:1.10.1790.10 186 269 3.3E-12 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 Gene3D G3DSA:3.40.50.270 400 485 9.9E-7 T 11-11-2016 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 SUPERFAMILY SSF52794 399 480 9.42E-6 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS02855 4107cdd5a1cc9730a717ab8b169874c5 642 SUPERFAMILY SSF46785 3 61 6.91E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 24 329 4.4E-73 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 368 607 3.5E-59 T 11-11-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 SUPERFAMILY SSF51445 4 367 7.48E-115 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 SMART SM01217 644 713 1.9E-28 T 11-11-2016 IPR026891 Fibronectin type III-like domain Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 Gene3D G3DSA:3.40.50.1700 353 609 6.9E-80 T 11-11-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 Pfam PF14310 Fibronectin type III-like domain 644 713 1.2E-20 T 11-11-2016 IPR026891 Fibronectin type III-like domain Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 96 115 1.6E-25 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 72 88 1.6E-25 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 249 267 1.6E-25 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 179 195 1.6E-25 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 PRINTS PR00133 Glycosyl hydrolase family 3 signature 142 158 1.6E-25 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 SUPERFAMILY SSF52279 368 610 3.14E-58 T 11-11-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 Gferi_RS15025 d2c3207a83681ece3c7933190676ed1a 727 Gene3D G3DSA:3.20.20.300 4 340 2.8E-118 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS19165 b9ec7a9011bce0cc55a4a776955769b0 343 Pfam PF00994 Probable molybdopterin binding domain 174 304 1.2E-20 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS19165 b9ec7a9011bce0cc55a4a776955769b0 343 Gene3D G3DSA:3.40.980.10 160 307 2.9E-31 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS19165 b9ec7a9011bce0cc55a4a776955769b0 343 SUPERFAMILY SSF53218 169 310 4.45E-33 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS19165 b9ec7a9011bce0cc55a4a776955769b0 343 SMART SM00852 174 306 5.1E-24 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 Hamap MF_00580 10 kDa chaperonin [groS]. 2 94 25.668 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 SUPERFAMILY SSF50129 1 94 1.04E-32 T 11-11-2016 IPR011032 GroES-like Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 PRINTS PR00297 10kDa chaperonin signature 25 46 9.3E-31 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 PRINTS PR00297 10kDa chaperonin signature 3 18 9.3E-31 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 PRINTS PR00297 10kDa chaperonin signature 80 93 9.3E-31 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 PRINTS PR00297 10kDa chaperonin signature 59 71 9.3E-31 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 Gene3D G3DSA:2.30.33.40 1 94 1.1E-36 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 Pfam PF00166 Chaperonin 10 Kd subunit 2 93 6.7E-34 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 SMART SM00883 2 93 8.3E-51 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Gferi_RS10280 dd30ffa431772ae8fb437120d873a0ba 94 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-11-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 Gferi_RS21885 5ccf6723825e9e01584a24deece49da5 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 7.1E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21885 5ccf6723825e9e01584a24deece49da5 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 7.1E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21885 5ccf6723825e9e01584a24deece49da5 210 Gene3D G3DSA:1.10.10.60 14 64 5.0E-20 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21885 5ccf6723825e9e01584a24deece49da5 210 SUPERFAMILY SSF46689 11 88 1.49E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21885 5ccf6723825e9e01584a24deece49da5 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 62 4.6E-15 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21885 5ccf6723825e9e01584a24deece49da5 210 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS21885 5ccf6723825e9e01584a24deece49da5 210 Gene3D G3DSA:1.10.357.10 65 206 2.9E-31 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS21885 5ccf6723825e9e01584a24deece49da5 210 SUPERFAMILY SSF48498 85 206 1.73E-23 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 SUPERFAMILY SSF52540 5 199 7.41E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 Hamap MF_00551 Uridine kinase [udk]. 4 208 41.187 T 11-11-2016 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 9 194 3.3E-40 T 11-11-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 Gene3D G3DSA:3.40.50.300 6 206 8.4E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 TIGRFAM TIGR00235 udk: uridine kinase 7 206 5.3E-85 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 PRINTS PR00988 Uridine kinase signature 37 48 3.5E-33 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 PRINTS PR00988 Uridine kinase signature 138 148 3.5E-33 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 PRINTS PR00988 Uridine kinase signature 152 163 3.5E-33 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 PRINTS PR00988 Uridine kinase signature 174 187 3.5E-33 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 PRINTS PR00988 Uridine kinase signature 82 97 3.5E-33 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 Gferi_RS26930 9fb2cc4d652557dcf8169f33b6954dcd 219 PRINTS PR00988 Uridine kinase signature 7 24 3.5E-33 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 Gferi_RS03340 f0fa63b741ba4926b6a86010532e29ae 729 SUPERFAMILY SSF56719 27 479 1.44E-114 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Gferi_RS03340 f0fa63b741ba4926b6a86010532e29ae 729 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 29 464 1.1E-120 T 11-11-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03340 f0fa63b741ba4926b6a86010532e29ae 729 SMART SM00434 8 456 1.8E-113 T 11-11-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03340 f0fa63b741ba4926b6a86010532e29ae 729 Gene3D G3DSA:2.120.10.90 490 690 3.1E-36 T 11-11-2016 Gferi_RS03340 f0fa63b741ba4926b6a86010532e29ae 729 Gene3D G3DSA:3.90.199.10 27 230 6.3E-70 T 11-11-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03340 f0fa63b741ba4926b6a86010532e29ae 729 Gene3D G3DSA:3.90.199.10 325 389 6.3E-70 T 11-11-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03340 f0fa63b741ba4926b6a86010532e29ae 729 SUPERFAMILY SSF101904 492 711 1.12E-38 T 11-11-2016 Gferi_RS03340 f0fa63b741ba4926b6a86010532e29ae 729 Gene3D G3DSA:3.30.1360.40 231 324 8.0E-25 T 11-11-2016 IPR024946 Arginine repressor C-terminal-like domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 SMART SM00091 140 206 4.6E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 SMART SM00382 297 440 1.5E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 SUPERFAMILY SSF46689 490 585 9.56E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 242 9.3E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Pfam PF00989 PAS fold 141 192 1.5E-7 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Pfam PF02954 Bacterial regulatory protein, Fis family 545 581 3.7E-14 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Gene3D G3DSA:3.10.580.10 10 127 9.2E-19 T 11-11-2016 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Pfam PF00158 Sigma-54 interaction domain 277 444 3.4E-65 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Gene3D G3DSA:3.30.450.20 135 242 3.6E-13 T 11-11-2016 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 SMART SM00116 18 69 3.2 T 11-11-2016 IPR000644 CBS domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 SMART SM00116 85 132 0.23 T 11-11-2016 IPR000644 CBS domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Gene3D G3DSA:3.40.50.300 275 449 3.5E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 549 566 7.7E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 566 586 7.7E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 SUPERFAMILY SSF52540 277 521 4.72E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Pfam PF00571 CBS domain 78 125 1.8E-7 T 11-11-2016 IPR000644 CBS domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Pfam PF00571 CBS domain 11 65 0.0022 T 11-11-2016 IPR000644 CBS domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 301 314 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Gene3D G3DSA:1.10.10.60 523 586 1.2E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 Gene3D G3DSA:1.10.8.60 450 522 8.3E-23 T 11-11-2016 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 SUPERFAMILY SSF55785 133 241 3.14E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 SUPERFAMILY SSF54631 9 131 3.16E-20 T 11-11-2016 Gferi_RS00590 3594583cc4d15ad47a0a23a6a67e05d0 591 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 363 378 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS19700 c2509775383bfd426a552c9960ee68c7 469 Gene3D G3DSA:3.40.50.10370 380 469 2.1E-38 T 11-11-2016 IPR029503 Phosphotransferase system EIIB component, mannitol-specific GO:0009401|GO:0022872 Gferi_RS19700 c2509775383bfd426a552c9960ee68c7 469 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 383 466 2.3E-13 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS19700 c2509775383bfd426a552c9960ee68c7 469 Pfam PF02378 Phosphotransferase system, EIIC 25 283 1.8E-22 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS19700 c2509775383bfd426a552c9960ee68c7 469 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 16 347 1.8E-163 T 11-11-2016 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 Gferi_RS19700 c2509775383bfd426a552c9960ee68c7 469 SUPERFAMILY SSF52794 380 468 9.24E-24 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS16640 d636bd57c53d889db82946e688a40852 327 SMART SM00861 4 179 1.1E-71 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS16640 d636bd57c53d889db82946e688a40852 327 Pfam PF02779 Transketolase, pyrimidine binding domain 7 178 7.1E-50 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS16640 d636bd57c53d889db82946e688a40852 327 SUPERFAMILY SSF52922 188 325 2.49E-40 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS16640 d636bd57c53d889db82946e688a40852 327 Gene3D G3DSA:3.40.50.970 4 196 3.7E-80 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS16640 d636bd57c53d889db82946e688a40852 327 Pfam PF02780 Transketolase, C-terminal domain 194 313 1.3E-38 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS16640 d636bd57c53d889db82946e688a40852 327 SUPERFAMILY SSF52518 3 204 1.08E-72 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS16640 d636bd57c53d889db82946e688a40852 327 Gene3D G3DSA:3.40.50.920 197 321 2.4E-44 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS07400 2bb543f8ff06d5f1042fdec0fc0e7bfd 304 Gene3D G3DSA:3.40.250.10 167 291 4.0E-28 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07400 2bb543f8ff06d5f1042fdec0fc0e7bfd 304 Gene3D G3DSA:3.40.250.10 35 165 7.1E-34 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07400 2bb543f8ff06d5f1042fdec0fc0e7bfd 304 SMART SM00450 36 150 5.0E-20 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07400 2bb543f8ff06d5f1042fdec0fc0e7bfd 304 SMART SM00450 176 286 8.6E-21 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07400 2bb543f8ff06d5f1042fdec0fc0e7bfd 304 SUPERFAMILY SSF52821 35 165 6.94E-31 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07400 2bb543f8ff06d5f1042fdec0fc0e7bfd 304 Pfam PF00581 Rhodanese-like domain 40 146 1.2E-19 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07400 2bb543f8ff06d5f1042fdec0fc0e7bfd 304 Pfam PF00581 Rhodanese-like domain 177 282 3.1E-17 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07400 2bb543f8ff06d5f1042fdec0fc0e7bfd 304 SUPERFAMILY SSF52821 169 290 5.63E-28 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS15815 27e67c9cce753bcf1818fbc16f3746a7 237 Gene3D G3DSA:3.30.240.20 83 154 2.7E-24 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS15815 27e67c9cce753bcf1818fbc16f3746a7 237 Gene3D G3DSA:3.30.240.20 169 227 9.0E-16 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS15815 27e67c9cce753bcf1818fbc16f3746a7 237 Pfam PF04239 Protein of unknown function (DUF421) 90 202 1.6E-27 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS15815 27e67c9cce753bcf1818fbc16f3746a7 237 Pfam PF04239 Protein of unknown function (DUF421) 169 228 9.6E-8 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 Gene3D G3DSA:3.40.50.620 2 204 1.4E-88 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 1 325 41.954 T 11-11-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 19 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 192 202 8.0E-29 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 14 30 8.0E-29 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 139 160 8.0E-29 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 64 83 8.0E-29 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 Pfam PF00579 tRNA synthetases class I (W and Y) 3 276 1.9E-79 T 11-11-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 2 324 1.2E-113 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 Gene3D G3DSA:1.10.240.10 205 290 1.0E-17 T 11-11-2016 Gferi_RS13195 297013a08280520ebc1257f1a50b5fbd 327 SUPERFAMILY SSF52374 1 324 6.2E-95 T 11-11-2016 Gferi_RS21890 e36f3d3ddc088773385e917e80c30e26 232 SMART SM00382 31 214 5.3E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS21890 e36f3d3ddc088773385e917e80c30e26 232 Pfam PF00005 ABC transporter 22 165 4.8E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS21890 e36f3d3ddc088773385e917e80c30e26 232 Gene3D G3DSA:3.40.50.300 2 218 2.9E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21890 e36f3d3ddc088773385e917e80c30e26 232 SUPERFAMILY SSF52540 3 220 1.56E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21890 e36f3d3ddc088773385e917e80c30e26 232 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15950 753f6ea20a979dd8c0db3361a7e0cd86 419 SMART SM00387 313 419 8.9E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15950 753f6ea20a979dd8c0db3361a7e0cd86 419 Pfam PF14501 GHKL domain 314 411 6.9E-15 T 11-11-2016 IPR032834 Sensor histidine kinase NatK, C-terminal domain Gferi_RS15950 753f6ea20a979dd8c0db3361a7e0cd86 419 Gene3D G3DSA:3.30.565.10 281 416 1.0E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15950 753f6ea20a979dd8c0db3361a7e0cd86 419 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 214 265 3.3E-7 T 11-11-2016 Gferi_RS15950 753f6ea20a979dd8c0db3361a7e0cd86 419 SUPERFAMILY SSF55874 280 419 6.31E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15950 753f6ea20a979dd8c0db3361a7e0cd86 419 Gene3D G3DSA:1.10.287.130 216 263 9.7E-8 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 153 177 6.4E-17 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 111 119 6.4E-17 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 206 222 6.4E-17 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 64 74 6.4E-17 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 6.4E-17 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 286 304 6.4E-17 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 Gene3D G3DSA:3.50.50.60 120 319 3.2E-29 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 Gene3D G3DSA:3.50.50.60 6 119 7.8E-25 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 SUPERFAMILY SSF51905 6 327 2.72E-42 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 264 1.2E-20 T 11-11-2016 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 110 128 1.2E-20 T 11-11-2016 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.2E-20 T 11-11-2016 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 157 175 1.2E-20 T 11-11-2016 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 298 1.2E-20 T 11-11-2016 Gferi_RS22075 c7ede64c3f82146b1b4684b80d132bdc 413 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 298 1.0E-32 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 219 261 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 Pfam PF12833 Helix-turn-helix domain 188 267 9.4E-18 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 SUPERFAMILY SSF51215 18 138 7.19E-10 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 Gene3D G3DSA:1.10.10.60 166 216 2.7E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 SMART SM00342 182 265 2.8E-24 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 Gene3D G3DSA:1.10.10.60 221 269 5.4E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 SUPERFAMILY SSF46689 167 215 3.76E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 Gene3D G3DSA:2.60.120.10 16 72 1.2E-7 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 SUPERFAMILY SSF46689 219 269 2.42E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22580 df48af01d9b4ef2cdefba6c10761f0dc 300 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 167 211 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 Gene3D G3DSA:1.10.10.60 413 472 2.5E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 365 374 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 SUPERFAMILY SSF46689 365 472 3.01E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 Gene3D G3DSA:1.10.8.60 325 400 3.2E-21 T 11-11-2016 Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 Pfam PF02954 Bacterial regulatory protein, Fis family 429 469 1.3E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 452 472 2.7E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 435 452 2.7E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 SMART SM00382 173 315 7.7E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 SUPERFAMILY SSF52540 152 395 1.92E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 Gene3D G3DSA:3.40.50.300 148 320 4.2E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06260 1180709f3521f1362bf204f334fe1467 476 Pfam PF00158 Sigma-54 interaction domain 154 317 3.0E-57 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 Gene3D G3DSA:3.40.50.2300 2 111 5.7E-34 T 11-11-2016 Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 SUPERFAMILY SSF52172 1 111 2.56E-31 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 Gene3D G3DSA:3.40.50.180 161 347 1.8E-81 T 11-11-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 SMART SM00448 4 114 1.0E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 PIRSF PIRSF000876 1 349 2.0E-141 T 11-11-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 SUPERFAMILY SSF52738 162 347 1.57E-69 T 11-11-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 Pfam PF01339 CheB methylesterase 164 343 2.0E-63 T 11-11-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 348 41.547 T 11-11-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 Gferi_RS00855 530f37987001edf23b9fc06803fdd1c3 349 Pfam PF00072 Response regulator receiver domain 6 111 3.8E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS24595 1158ec0eb6a471ba4fdccf383aa3e540 598 Gene3D G3DSA:3.40.50.410 456 588 2.2E-7 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS24595 1158ec0eb6a471ba4fdccf383aa3e540 598 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 471 516 1.4E-4 T 11-11-2016 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 Gferi_RS24595 1158ec0eb6a471ba4fdccf383aa3e540 598 Pfam PF13256 Domain of unknown function (DUF4047) 224 304 3.8E-5 T 11-11-2016 IPR025120 Domain of unknown function DUF4047 Gferi_RS24595 1158ec0eb6a471ba4fdccf383aa3e540 598 SUPERFAMILY SSF53300 542 594 2.41E-8 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS24595 1158ec0eb6a471ba4fdccf383aa3e540 598 SUPERFAMILY SSF53300 451 513 2.41E-8 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS02685 6c0f9ab86e93fc7bf5ab33b9556f4b49 354 Gene3D G3DSA:1.10.3210.10 122 275 8.0E-22 T 11-11-2016 IPR006674 HD domain Gferi_RS02685 6c0f9ab86e93fc7bf5ab33b9556f4b49 354 Pfam PF01966 HD domain 127 250 1.3E-17 T 11-11-2016 IPR006674 HD domain Gferi_RS02685 6c0f9ab86e93fc7bf5ab33b9556f4b49 354 SMART SM00471 123 259 9.3E-13 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS02685 6c0f9ab86e93fc7bf5ab33b9556f4b49 354 SUPERFAMILY SSF109604 119 288 1.1E-37 T 11-11-2016 Gferi_RS02685 6c0f9ab86e93fc7bf5ab33b9556f4b49 354 TIGRFAM TIGR00277 HDIG: HDIG domain 125 202 4.0E-8 T 11-11-2016 IPR006675 HDIG domain Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 Gene3D G3DSA:3.20.70.20 514 561 4.3E-181 T 11-11-2016 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 Gene3D G3DSA:3.20.70.20 2 453 4.3E-181 T 11-11-2016 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 Pfam PF02867 Ribonucleotide reductase, barrel domain 86 555 6.3E-164 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 SUPERFAMILY SSF51998 85 459 3.36E-156 T 11-11-2016 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 SUPERFAMILY SSF51998 491 567 3.36E-156 T 11-11-2016 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 8 565 3.0E-230 T 11-11-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 SUPERFAMILY SSF48168 1 84 2.33E-14 T 11-11-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 PRINTS PR01183 Ribonucleotide reductase large chain signature 302 325 2.3E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 PRINTS PR01183 Ribonucleotide reductase large chain signature 161 180 2.3E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 PRINTS PR01183 Ribonucleotide reductase large chain signature 340 362 2.3E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 PRINTS PR01183 Ribonucleotide reductase large chain signature 368 391 2.3E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 PRINTS PR01183 Ribonucleotide reductase large chain signature 408 435 2.3E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 Pfam PF12637 TSCPD domain 607 697 8.2E-11 T 11-11-2016 IPR024434 TSCPD domain Gferi_RS16975 cbfeb7adc2a1b4a3fa4b648b5f0b5b13 787 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 2 83 7.3E-28 T 11-11-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Gferi_RS21195 809ecdedf92d31ef3a18cfa67297193a 422 SUPERFAMILY SSF55785 162 260 3.49E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS21195 809ecdedf92d31ef3a18cfa67297193a 422 Gene3D G3DSA:3.30.70.270 266 420 5.9E-39 T 11-11-2016 Gferi_RS21195 809ecdedf92d31ef3a18cfa67297193a 422 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 263 420 1.8E-37 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS21195 809ecdedf92d31ef3a18cfa67297193a 422 Pfam PF00990 Diguanylate cyclase, GGDEF domain 264 418 1.9E-38 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS21195 809ecdedf92d31ef3a18cfa67297193a 422 SMART SM00267 253 422 7.2E-39 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS21195 809ecdedf92d31ef3a18cfa67297193a 422 SUPERFAMILY SSF55073 269 418 1.41E-35 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS02545 2731747053c113384830dae86138d6a7 491 Pfam PF06580 Histidine kinase 285 362 1.9E-22 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS02545 2731747053c113384830dae86138d6a7 491 SUPERFAMILY SSF55874 347 485 2.23E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02545 2731747053c113384830dae86138d6a7 491 SMART SM00387 380 487 4.4E-6 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02545 2731747053c113384830dae86138d6a7 491 SMART SM00304 202 255 0.0063 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS02545 2731747053c113384830dae86138d6a7 491 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 385 486 9.7E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02545 2731747053c113384830dae86138d6a7 491 Gene3D G3DSA:3.30.565.10 333 486 9.4E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02545 2731747053c113384830dae86138d6a7 491 SUPERFAMILY SSF158472 208 254 2.48E-5 T 11-11-2016 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 SMART SM00493 258 329 5.9E-22 T 11-11-2016 IPR006171 Toprim domain Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 3.4E-43 T 11-11-2016 IPR013264 DNA primase, catalytic core, N-terminal Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 TIGRFAM TIGR01391 dnaG: DNA primase 6 412 5.5E-148 T 11-11-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Gene3D G3DSA:1.10.860.10 473 536 2.6E-5 T 11-11-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 PIRSF PIRSF002811 3 613 1.7E-173 T 11-11-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 SUPERFAMILY SSF48024 473 536 9.02E-6 T 11-11-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Pfam PF00772 DnaB-like helicase N terminal domain 473 534 1.1E-5 T 11-11-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Pfam PF13155 Toprim-like 261 345 1.6E-21 T 11-11-2016 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Gene3D G3DSA:3.90.980.10 115 239 2.8E-43 T 11-11-2016 IPR013264 DNA primase, catalytic core, N-terminal Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 SUPERFAMILY SSF56731 115 418 2.62E-102 T 11-11-2016 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Pfam PF10410 DnaB-helicase binding domain of primase 365 420 6.6E-13 T 11-11-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Gene3D G3DSA:3.40.1360.10 240 360 3.2E-43 T 11-11-2016 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Hamap MF_00974 DNA primase [dnaG]. 4 598 28.441 T 11-11-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 SMART SM00400 36 90 5.3E-34 T 11-11-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 SUPERFAMILY SSF57783 6 99 4.25E-36 T 11-11-2016 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Pfam PF01807 CHC2 zinc finger 7 99 9.7E-39 T 11-11-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Gferi_RS02190 bbcf5a5cc170a59597f248c6445346a4 615 Gene3D G3DSA:3.90.580.10 7 100 2.0E-39 T 11-11-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Gferi_RS15785 c6c44da81e8d24fc21ae633836e9af64 347 SUPERFAMILY SSF52540 5 243 2.87E-86 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15785 c6c44da81e8d24fc21ae633836e9af64 347 Pfam PF08402 TOBE domain 274 342 1.0E-9 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Gferi_RS15785 c6c44da81e8d24fc21ae633836e9af64 347 SMART SM00382 30 213 4.4E-18 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15785 c6c44da81e8d24fc21ae633836e9af64 347 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15785 c6c44da81e8d24fc21ae633836e9af64 347 Gene3D G3DSA:3.40.50.300 4 236 1.6E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15785 c6c44da81e8d24fc21ae633836e9af64 347 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 36 320 2.2E-109 T 11-11-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 Gferi_RS15785 c6c44da81e8d24fc21ae633836e9af64 347 Pfam PF00005 ABC transporter 21 163 6.3E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS15785 c6c44da81e8d24fc21ae633836e9af64 347 SUPERFAMILY SSF50331 240 344 1.53E-14 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal Gferi_RS15235 2f523cf147bba7a862ddd740ca1775f6 160 SUPERFAMILY SSF55068 1 155 6.02E-68 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Gferi_RS15235 2f523cf147bba7a862ddd740ca1775f6 160 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 158 37.632 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Gferi_RS15235 2f523cf147bba7a862ddd740ca1775f6 160 Pfam PF01625 Peptide methionine sulfoxide reductase 3 153 9.5E-64 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Gferi_RS15235 2f523cf147bba7a862ddd740ca1775f6 160 Gene3D G3DSA:3.30.1060.10 1 153 7.6E-70 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Gferi_RS15235 2f523cf147bba7a862ddd740ca1775f6 160 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 2 152 1.0E-61 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 Gferi_RS21970 ce49a1978bf61d9049fcdfc17faefba0 208 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 58 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS21970 ce49a1978bf61d9049fcdfc17faefba0 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.1E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21970 ce49a1978bf61d9049fcdfc17faefba0 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.1E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21970 ce49a1978bf61d9049fcdfc17faefba0 208 Gene3D G3DSA:1.10.357.10 3 198 1.4E-34 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS21970 ce49a1978bf61d9049fcdfc17faefba0 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 60 1.7E-15 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21970 ce49a1978bf61d9049fcdfc17faefba0 208 SUPERFAMILY SSF48498 84 174 6.99E-6 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS21970 ce49a1978bf61d9049fcdfc17faefba0 208 SUPERFAMILY SSF46689 3 78 9.75E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21225 d959ddcc4cf8a2ad88e48897b3676ff3 183 Gene3D G3DSA:3.40.50.850 1 182 3.1E-47 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS21225 d959ddcc4cf8a2ad88e48897b3676ff3 183 SUPERFAMILY SSF52499 2 180 5.23E-47 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS21225 d959ddcc4cf8a2ad88e48897b3676ff3 183 Pfam PF00857 Isochorismatase family 4 144 7.7E-35 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS11195 dd7443c0c79e3bd2e9686098c6f45de4 270 Pfam PF05853 beta-keto acid cleavage enzyme 3 269 7.5E-109 T 11-11-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24 Gferi_RS11195 dd7443c0c79e3bd2e9686098c6f45de4 270 SUPERFAMILY SSF110395 32 88 2.62E-6 T 11-11-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 Gferi_RS11195 dd7443c0c79e3bd2e9686098c6f45de4 270 Gene3D G3DSA:3.20.20.70 1 270 6.2E-112 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 SUPERFAMILY SSF55347 151 313 1.2E-54 T 11-11-2016 Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 SMART SM00859 3 143 1.4E-43 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 339 43.781 T 11-11-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 Gene3D G3DSA:3.30.360.10 160 313 5.4E-63 T 11-11-2016 Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 SUPERFAMILY SSF51735 2 175 6.11E-49 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 2 345 5.3E-135 T 11-11-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 160 316 1.9E-23 T 11-11-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 Gene3D G3DSA:3.40.50.720 1 159 8.2E-60 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 143 8.4E-30 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Gferi_RS12825 e564d31e316761015c2a2931eee7eaf7 345 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 146 162 - T 11-11-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 118 2.2E-28 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 138 317 3.1E-54 T 11-11-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 SUPERFAMILY SSF55347 128 318 2.8E-76 T 11-11-2016 Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 Gene3D G3DSA:3.30.360.10 142 313 1.9E-80 T 11-11-2016 Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 SMART SM00859 5 120 5.6E-36 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 SUPERFAMILY SSF51735 4 156 1.63E-46 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 Gene3D G3DSA:3.40.50.720 1 141 1.3E-59 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 PIRSF PIRSF000148 3 336 7.6E-127 T 11-11-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 332 2.0E-138 T 11-11-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS25680 16db33cff435e5965f3a812a062e1ac0 336 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 3 331 35.805 T 11-11-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 Pfam PF07729 FCD domain 95 215 3.4E-23 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 2.9E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 2.9E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 SMART SM00895 94 216 1.9E-18 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 Gene3D G3DSA:1.10.10.10 7 73 6.5E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 70 7.1E-20 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 SUPERFAMILY SSF46785 6 74 1.55E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 Gene3D G3DSA:1.20.120.530 94 221 5.7E-24 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 SMART SM00345 11 70 4.4E-22 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS17870 a5db1743bd9b1436bc74ff50b58a706a 227 SUPERFAMILY SSF48008 95 220 2.09E-23 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 Gene3D G3DSA:3.40.120.10 14 137 1.6E-29 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 392 437 1.1E-5 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 SUPERFAMILY SSF53738 12 172 6.67E-33 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 259 354 1.2E-17 T 11-11-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 228 243 1.7E-21 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 1.7E-21 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 165 184 1.7E-21 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 199 212 1.7E-21 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 Gene3D G3DSA:3.40.120.10 167 244 2.3E-28 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 Gene3D G3DSA:3.40.120.10 245 358 3.9E-27 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 Gene3D G3DSA:3.30.310.50 363 443 1.4E-19 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 151 248 4.1E-24 T 11-11-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 SUPERFAMILY SSF55957 360 446 8.63E-16 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 SUPERFAMILY SSF53738 150 250 3.77E-28 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 11-11-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 13 134 9.4E-33 T 11-11-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS25645 c70d1ddc491358aa798dd93a5c49982a 451 SUPERFAMILY SSF53738 260 354 4.71E-22 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS00905 3f2772e2d09156af4d2bc4e6efd15c31 120 Pfam PF00072 Response regulator receiver domain 5 116 1.3E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00905 3f2772e2d09156af4d2bc4e6efd15c31 120 SMART SM00448 3 115 4.9E-39 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00905 3f2772e2d09156af4d2bc4e6efd15c31 120 SUPERFAMILY SSF52172 3 120 1.85E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS00905 3f2772e2d09156af4d2bc4e6efd15c31 120 Gene3D G3DSA:3.40.50.2300 2 119 1.0E-39 T 11-11-2016 Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 Pfam PF07729 FCD domain 98 215 2.8E-18 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 SMART SM00895 98 216 1.7E-10 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 8.2E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 8.2E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 SMART SM00345 15 74 8.8E-18 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 Gene3D G3DSA:1.10.10.10 10 76 3.7E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 SUPERFAMILY SSF48008 97 218 1.26E-19 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 SUPERFAMILY SSF46785 10 76 7.37E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 Gene3D G3DSA:1.20.120.530 92 225 8.0E-20 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS08815 0ff8f3682cdb7fb3539eccafd4e39ca4 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 3.0E-19 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS18480 0b62bbc81409a3884c53f474ff5ce6d9 305 PIRSF PIRSF000164 1 305 1.4E-84 T 11-11-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Gferi_RS18480 0b62bbc81409a3884c53f474ff5ce6d9 305 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 8 302 1.0E-113 T 11-11-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Gferi_RS18480 0b62bbc81409a3884c53f474ff5ce6d9 305 SUPERFAMILY SSF51395 2 302 5.33E-89 T 11-11-2016 Gferi_RS18480 0b62bbc81409a3884c53f474ff5ce6d9 305 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 7 303 41.284 T 11-11-2016 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 Gferi_RS18480 0b62bbc81409a3884c53f474ff5ce6d9 305 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 43 62 - T 11-11-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Gferi_RS18480 0b62bbc81409a3884c53f474ff5ce6d9 305 Gene3D G3DSA:3.20.20.70 4 302 1.2E-95 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS18480 0b62bbc81409a3884c53f474ff5ce6d9 305 Pfam PF01180 Dihydroorotate dehydrogenase 8 288 8.6E-75 T 11-11-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Gferi_RS19260 01e63f2e78a7a48ed8d1e175c7fc562a 275 Gene3D G3DSA:1.10.3720.10 9 262 1.2E-58 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19260 01e63f2e78a7a48ed8d1e175c7fc562a 275 SUPERFAMILY SSF161098 10 275 2.49E-61 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19260 01e63f2e78a7a48ed8d1e175c7fc562a 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 264 4.1E-16 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 SMART SM00382 140 268 9.4E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 ProSitePatterns PS01008 DnaA protein signature. 401 420 - T 11-11-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 9 441 1.3E-181 T 11-11-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 Gene3D G3DSA:3.40.50.300 96 272 7.2E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 Gene3D G3DSA:1.10.8.60 274 341 1.3E-31 T 11-11-2016 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 SUPERFAMILY SSF52540 107 320 4.99E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 354 420 2.6E-31 T 11-11-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 Gene3D G3DSA:1.10.1750.10 342 443 3.4E-41 T 11-11-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 141 161 1.3E-53 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 239 266 1.3E-53 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 205 219 1.3E-53 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 401 420 1.3E-53 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 173 187 1.3E-53 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 SUPERFAMILY SSF48295 339 442 1.12E-36 T 11-11-2016 IPR010921 Trp repressor/replication initiator GO:0043565 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 6 442 34.357 T 11-11-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 SMART SM00760 351 420 8.0E-40 T 11-11-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 Pfam PF11638 DnaA N-terminal domain 7 68 1.4E-12 T 11-11-2016 IPR024633 DnaA N-terminal domain Gferi_RS13260 b4b51c46adf0457dcd61cdb8a842e706 444 Pfam PF00308 Bacterial dnaA protein 108 325 1.7E-105 T 11-11-2016 IPR013317 Chromosomal replication initiator protein DnaA Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 PIRSF PIRSF000853 2 874 0.0 T 11-11-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 SUPERFAMILY SSF51621 511 870 5.42E-133 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 761 779 - T 11-11-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Gene3D G3DSA:3.30.1490.20 3 111 6.7E-61 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Gene3D G3DSA:3.30.1490.20 200 243 6.7E-61 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 3 871 0.0 T 11-11-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 18 293 8.9E-47 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 306 356 1.4E-10 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 450 461 - T 11-11-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Gene3D G3DSA:3.50.30.10 402 506 3.4E-40 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Gene3D G3DSA:1.20.80.30 112 198 2.5E-33 T 11-11-2016 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 SUPERFAMILY SSF52009 378 508 1.7E-37 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 SUPERFAMILY SSF56059 2 379 4.59E-148 T 11-11-2016 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Gene3D G3DSA:3.30.470.20 244 341 1.6E-41 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Gene3D G3DSA:1.10.189.10 342 401 8.9E-30 T 11-11-2016 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 517 869 1.7E-94 T 11-11-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Pfam PF00391 PEP-utilising enzyme, mobile domain 422 503 7.8E-28 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS02210 4d73d499bb8f502e470fc0945aebbf11 874 Gene3D G3DSA:3.20.20.60 533 871 1.1E-143 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS08020 ea9729f7547c862b3e3a34a6586a2052 279 Gene3D G3DSA:3.40.109.30 173 277 6.0E-14 T 11-11-2016 Gferi_RS08020 ea9729f7547c862b3e3a34a6586a2052 279 SUPERFAMILY SSF55469 145 245 5.04E-16 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS08020 ea9729f7547c862b3e3a34a6586a2052 279 SUPERFAMILY SSF55469 9 114 5.04E-16 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS08020 ea9729f7547c862b3e3a34a6586a2052 279 Pfam PF14512 Putative TM nitroreductase 141 254 2.4E-17 T 11-11-2016 IPR029478 Putative nitroreductase TM1586 Gferi_RS08020 ea9729f7547c862b3e3a34a6586a2052 279 Pfam PF14512 Putative TM nitroreductase 7 109 2.5E-15 T 11-11-2016 IPR029478 Putative nitroreductase TM1586 Gferi_RS08020 ea9729f7547c862b3e3a34a6586a2052 279 Gene3D G3DSA:3.40.109.10 3 157 3.5E-24 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS16515 961b4272be9a456dd16819c4acd19d73 213 Gene3D G3DSA:3.40.50.150 37 182 5.7E-10 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS16515 961b4272be9a456dd16819c4acd19d73 213 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 26 212 1.4E-55 T 11-11-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Gferi_RS16515 961b4272be9a456dd16819c4acd19d73 213 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 1 212 27.317 T 11-11-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Gferi_RS16515 961b4272be9a456dd16819c4acd19d73 213 Pfam PF02390 Putative methyltransferase 40 207 1.0E-45 T 11-11-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Gferi_RS16515 961b4272be9a456dd16819c4acd19d73 213 SUPERFAMILY SSF53335 35 210 5.57E-27 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 4 417 9.5E-157 T 11-11-2016 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 Gene3D G3DSA:3.40.1060.10 160 264 1.4E-30 T 11-11-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 SUPERFAMILY SSF53732 1 419 1.44E-133 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 3 419 44.22 T 11-11-2016 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 3 417 4.2E-149 T 11-11-2016 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 PRINTS PR00415 Aconitase family signature 113 126 1.9E-17 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 PRINTS PR00415 Aconitase family signature 189 202 1.9E-17 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 PRINTS PR00415 Aconitase family signature 203 216 1.9E-17 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 PRINTS PR00415 Aconitase family signature 127 142 1.9E-17 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 PRINTS PR00415 Aconitase family signature 352 365 1.9E-17 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 Pfam PF00330 Aconitase family (aconitate hydratase) 75 411 4.0E-94 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 Gene3D G3DSA:3.30.499.10 273 419 3.6E-56 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08470 eb07bfd08caab4b3975bf54a23b6f772 420 Gene3D G3DSA:3.30.499.10 1 159 1.4E-33 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS23060 1ba53ef20bfb7263ce979e68c96db6ed 396 SUPERFAMILY SSF52540 71 357 1.2E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23060 1ba53ef20bfb7263ce979e68c96db6ed 396 SMART SM00487 22 219 1.1E-49 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS23060 1ba53ef20bfb7263ce979e68c96db6ed 396 Gene3D G3DSA:3.40.50.300 209 369 1.4E-39 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23060 1ba53ef20bfb7263ce979e68c96db6ed 396 Gene3D G3DSA:3.40.50.300 3 208 5.7E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23060 1ba53ef20bfb7263ce979e68c96db6ed 396 SMART SM00490 255 336 5.4E-23 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS23060 1ba53ef20bfb7263ce979e68c96db6ed 396 Pfam PF00270 DEAD/DEAH box helicase 27 192 2.9E-40 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Gferi_RS23060 1ba53ef20bfb7263ce979e68c96db6ed 396 Pfam PF00271 Helicase conserved C-terminal domain 228 335 6.2E-24 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 SUPERFAMILY SSF55804 409 464 4.36E-7 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 413 461 1.5E-4 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 SUPERFAMILY SSF63520 197 294 5.62E-23 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 Pfam PF00874 PRD domain 201 289 8.8E-21 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 Gene3D G3DSA:3.40.930.10 409 467 1.3E-13 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 Gene3D G3DSA:1.10.1790.10 198 291 1.3E-22 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 SUPERFAMILY SSF52794 301 386 1.05E-8 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 Gene3D G3DSA:3.40.50.270 301 384 2.9E-9 T 11-11-2016 Gferi_RS05115 72b8e0ccfca60a38a1f048ada84a76cf 481 Pfam PF05043 Mga helix-turn-helix domain 7 66 5.8E-7 T 11-11-2016 IPR007737 Mga helix-turn-helix domain Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 Gene3D G3DSA:1.10.10.60 546 590 1.8E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 SUPERFAMILY SSF46689 497 593 1.17E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 Gene3D G3DSA:3.30.450.20 149 246 1.2E-7 T 11-11-2016 Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 370 385 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 Gene3D G3DSA:3.40.50.300 281 456 6.9E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 Gene3D G3DSA:1.10.8.60 457 530 5.4E-20 T 11-11-2016 Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 307 320 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 Pfam PF02954 Bacterial regulatory protein, Fis family 548 591 1.4E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 SUPERFAMILY SSF55785 149 260 1.9E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 Pfam PF00158 Sigma-54 interaction domain 283 449 5.9E-66 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 SMART SM00382 303 451 3.2E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15445 b27779bd48683e957d39e2455d9fffe2 595 SUPERFAMILY SSF52540 282 526 2.7E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24820 5f13b1398d26cd289938eafe998df25d 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 262 3.1E-24 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24820 5f13b1398d26cd289938eafe998df25d 278 Gene3D G3DSA:1.10.3720.10 65 267 3.4E-23 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24820 5f13b1398d26cd289938eafe998df25d 278 SUPERFAMILY SSF161098 70 258 1.96E-25 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS17955 bac2bc7b03862155c6592204f6c4699c 258 SUPERFAMILY SSF46785 9 83 2.31E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17955 bac2bc7b03862155c6592204f6c4699c 258 Pfam PF01614 Bacterial transcriptional regulator 127 251 8.5E-39 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS17955 bac2bc7b03862155c6592204f6c4699c 258 SUPERFAMILY SSF55781 67 255 1.83E-48 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS17955 bac2bc7b03862155c6592204f6c4699c 258 Gene3D G3DSA:1.10.10.10 9 82 3.0E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17955 bac2bc7b03862155c6592204f6c4699c 258 Pfam PF09339 IclR helix-turn-helix domain 11 61 6.4E-16 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS17955 bac2bc7b03862155c6592204f6c4699c 258 SMART SM00346 9 99 3.1E-28 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS17955 bac2bc7b03862155c6592204f6c4699c 258 Gene3D G3DSA:3.30.450.40 83 257 2.0E-54 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS19850 c06e73f37f63f43b5be76a07be130672 654 Pfam PF02449 Beta-galactosidase 6 381 7.8E-121 T 11-11-2016 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 Gferi_RS19850 c06e73f37f63f43b5be76a07be130672 654 SUPERFAMILY SSF51445 3 381 1.36E-95 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS19850 c06e73f37f63f43b5be76a07be130672 654 Gene3D G3DSA:3.40.50.880 390 603 1.1E-45 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS19850 c06e73f37f63f43b5be76a07be130672 654 SUPERFAMILY SSF52317 390 600 1.49E-42 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS19850 c06e73f37f63f43b5be76a07be130672 654 PIRSF PIRSF001084 1 648 2.8E-172 T 11-11-2016 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 Gferi_RS19850 c06e73f37f63f43b5be76a07be130672 654 Pfam PF08532 Beta-galactosidase trimerisation domain 393 600 1.4E-46 T 11-11-2016 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 Gferi_RS19850 c06e73f37f63f43b5be76a07be130672 654 Gene3D G3DSA:3.20.20.80 3 383 9.0E-110 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS27155 4561c19a80b1d41d59eb5ed3058623e2 235 Gene3D G3DSA:3.90.1550.10 6 212 6.7E-61 T 11-11-2016 Gferi_RS27155 4561c19a80b1d41d59eb5ed3058623e2 235 SUPERFAMILY SSF55681 5 214 8.08E-56 T 11-11-2016 Gferi_RS27155 4561c19a80b1d41d59eb5ed3058623e2 235 PIRSF PIRSF016262 2 226 1.4E-58 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS27155 4561c19a80b1d41d59eb5ed3058623e2 235 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 83 136 4.0E-7 T 11-11-2016 Gferi_RS27155 4561c19a80b1d41d59eb5ed3058623e2 235 Pfam PF03099 Biotin/lipoate A/B protein ligase family 63 167 2.5E-8 T 11-11-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 Gferi_RS27155 4561c19a80b1d41d59eb5ed3058623e2 235 Hamap MF_00013 Octanoyltransferase [lipB]. 6 215 31.917 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS27155 4561c19a80b1d41d59eb5ed3058623e2 235 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 31 211 3.6E-48 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS09895 fe46f2d73d80e2fbdf0ea022e8f04f03 255 Gene3D G3DSA:3.30.450.40 74 250 3.1E-36 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS09895 fe46f2d73d80e2fbdf0ea022e8f04f03 255 SMART SM00346 1 91 8.9E-21 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS09895 fe46f2d73d80e2fbdf0ea022e8f04f03 255 Pfam PF01614 Bacterial transcriptional regulator 123 243 1.9E-21 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS09895 fe46f2d73d80e2fbdf0ea022e8f04f03 255 SUPERFAMILY SSF46785 3 75 3.52E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09895 fe46f2d73d80e2fbdf0ea022e8f04f03 255 SUPERFAMILY SSF55781 73 247 1.37E-34 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS09895 fe46f2d73d80e2fbdf0ea022e8f04f03 255 Pfam PF09339 IclR helix-turn-helix domain 4 53 1.1E-12 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS09895 fe46f2d73d80e2fbdf0ea022e8f04f03 255 Gene3D G3DSA:1.10.10.10 3 73 1.1E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 Pfam PF04509 CheC-like family 135 170 1.3E-12 T 11-11-2016 IPR007597 CheC-like protein GO:0016787 Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 Pfam PF04509 CheC-like family 39 74 1.0E-10 T 11-11-2016 IPR007597 CheC-like protein GO:0016787 Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 Gene3D G3DSA:3.40.1550.10 34 224 2.8E-63 T 11-11-2016 IPR028976 CheC-like domain Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 PRINTS PR00956 Flagellar motor switch protein FliN signature 319 335 2.0E-25 T 11-11-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 PRINTS PR00956 Flagellar motor switch protein FliN signature 302 318 2.0E-25 T 11-11-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 PRINTS PR00956 Flagellar motor switch protein FliN signature 335 348 2.0E-25 T 11-11-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 PRINTS PR00956 Flagellar motor switch protein FliN signature 348 363 2.0E-25 T 11-11-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 SUPERFAMILY SSF101801 299 380 1.01E-23 T 11-11-2016 IPR001543 Surface presentation of antigen (SpoA) Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 302 372 1.4E-24 T 11-11-2016 IPR001543 Surface presentation of antigen (SpoA) Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 SUPERFAMILY SSF103039 35 224 5.89E-50 T 11-11-2016 IPR028976 CheC-like domain Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 299 374 5.8E-30 T 11-11-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 Gferi_RS00910 345fb24a70e0830519f4cd5e8b47a610 382 Gene3D G3DSA:2.30.330.10 294 381 4.1E-34 T 11-11-2016 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 Gene3D G3DSA:3.30.300.20 278 345 8.1E-32 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 SMART SM00316 133 199 4.9E-9 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 341 2.1E-134 T 11-11-2016 IPR010213 Transcription termination factor NusA GO:0003723 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 SUPERFAMILY SSF54814 199 277 3.27E-32 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 Gene3D G3DSA:3.30.1480.10 1 123 1.5E-48 T 11-11-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 354 30.614 T 11-11-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 SUPERFAMILY SSF54814 279 341 3.4E-15 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 SUPERFAMILY SSF50249 132 198 2.83E-19 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 Pfam PF08529 NusA N-terminal domain 4 123 3.5E-45 T 11-11-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 Gene3D G3DSA:3.30.300.20 198 276 8.5E-38 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 Pfam PF13184 NusA-like KH domain 229 297 4.0E-30 T 11-11-2016 IPR025249 KH domain, NusA-like GO:0003723 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 SUPERFAMILY SSF69705 1 126 7.98E-45 T 11-11-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 Pfam PF00575 S1 RNA binding domain 135 194 4.9E-7 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS00735 212fac0ccc4ee7ccf6c31fd11edb64c0 354 Gene3D G3DSA:2.40.50.140 136 197 4.4E-29 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 263 419 5.9E-44 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 SUPERFAMILY SSF55781 89 262 1.96E-24 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 Gene3D G3DSA:3.30.450.40 79 259 5.1E-30 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 SMART SM00267 252 419 2.2E-33 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 Pfam PF13185 GAF domain 102 250 1.0E-12 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 Gene3D G3DSA:3.30.70.270 264 419 1.4E-41 T 11-11-2016 Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 Pfam PF00990 Diguanylate cyclase, GGDEF domain 264 418 7.0E-36 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 SUPERFAMILY SSF55073 268 418 3.22E-40 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS20680 31ef3f2c3b68432b700a06d6a4fda989 421 SMART SM00065 103 260 2.6E-9 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS17115 b88923765f238f0cf5b8f45ae943276d 344 Gene3D G3DSA:3.30.590.10 3 246 3.8E-83 T 11-11-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Gferi_RS17115 b88923765f238f0cf5b8f45ae943276d 344 Hamap MF_00602 Protein-arginine kinase [mcsB]. 3 341 38.133 T 11-11-2016 IPR023660 Arginine kinase GO:0016775 Gferi_RS17115 b88923765f238f0cf5b8f45ae943276d 344 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 10 244 9.1E-88 T 11-11-2016 IPR022414 ATP:guanido phosphotransferase, catalytic domain GO:0016301|GO:0016772 Reactome: R-HSA-71288 Gferi_RS17115 b88923765f238f0cf5b8f45ae943276d 344 ProSitePatterns PS00112 Phosphagen kinase active site signature. 158 164 - T 11-11-2016 IPR022415 ATP:guanido phosphotransferase active site GO:0016301|GO:0016772 Reactome: R-HSA-71288 Gferi_RS17115 b88923765f238f0cf5b8f45ae943276d 344 SUPERFAMILY SSF55931 2 259 1.04E-86 T 11-11-2016 Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Gene3D G3DSA:1.10.3500.10 441 488 2.4E-95 T 11-11-2016 IPR023323 Tex-like domain Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Gene3D G3DSA:1.10.3500.10 109 312 2.4E-95 T 11-11-2016 IPR023323 Tex-like domain Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Pfam PF09371 Tex-like protein N-terminal domain 9 193 4.8E-69 T 11-11-2016 IPR018974 Tex-like protein, N-terminal Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 SMART SM00732 316 414 2.4E-39 T 11-11-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Gene3D G3DSA:2.40.50.140 629 718 2.4E-27 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Pfam PF12836 Helix-hairpin-helix motif 481 545 3.6E-26 T 11-11-2016 Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 SUPERFAMILY SSF53098 312 459 4.1E-50 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Gene3D G3DSA:1.10.150.310 489 626 6.4E-48 T 11-11-2016 IPR023097 Tex RuvX-like domain Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 SUPERFAMILY SSF47781 551 628 2.45E-18 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Gene3D G3DSA:1.10.10.650 2 108 1.5E-40 T 11-11-2016 IPR023319 Tex-like protein, HTH domain Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 SUPERFAMILY SSF50249 631 718 5.65E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 SUPERFAMILY SSF47781 460 547 9.67E-26 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Gene3D G3DSA:3.30.420.140 316 440 1.1E-52 T 11-11-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Pfam PF00575 S1 RNA binding domain 646 716 2.0E-18 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 SMART SM00316 645 716 8.7E-25 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 SUPERFAMILY SSF158832 2 311 7.72E-113 T 11-11-2016 Gferi_RS10655 fe89676b7ae4c789c1adc9f9480d1eb3 720 Pfam PF16921 Tex protein YqgF-like domain 316 441 1.4E-56 T 11-11-2016 IPR032639 Tex protein, YqgF-like domain Gferi_RS13950 6cdf7a8763a2ea2958cf0f71d3ef04db 426 Pfam PF00483 Nucleotidyl transferase 2 230 6.0E-29 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS13950 6cdf7a8763a2ea2958cf0f71d3ef04db 426 Gene3D G3DSA:3.90.550.10 1 227 1.4E-60 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS13950 6cdf7a8763a2ea2958cf0f71d3ef04db 426 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 244 394 4.3E-38 T 11-11-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 Gferi_RS13950 6cdf7a8763a2ea2958cf0f71d3ef04db 426 Pfam PF13242 HAD-hyrolase-like 351 419 2.0E-15 T 11-11-2016 Gferi_RS13950 6cdf7a8763a2ea2958cf0f71d3ef04db 426 SUPERFAMILY SSF53448 1 234 4.8E-61 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS13950 6cdf7a8763a2ea2958cf0f71d3ef04db 426 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 244 398 1.2E-32 T 11-11-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Gferi_RS13950 6cdf7a8763a2ea2958cf0f71d3ef04db 426 Gene3D G3DSA:3.40.50.1000 228 424 1.7E-58 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS13950 6cdf7a8763a2ea2958cf0f71d3ef04db 426 SUPERFAMILY SSF56784 234 423 5.24E-46 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS12535 45864f65bf3c4722f48d792a2e298255 206 SUPERFAMILY SSF48498 86 206 2.05E-16 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS12535 45864f65bf3c4722f48d792a2e298255 206 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS12535 45864f65bf3c4722f48d792a2e298255 206 Gene3D G3DSA:1.10.357.10 63 206 3.5E-23 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS12535 45864f65bf3c4722f48d792a2e298255 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 4.4E-10 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS12535 45864f65bf3c4722f48d792a2e298255 206 Gene3D G3DSA:1.10.10.60 9 62 6.1E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS12535 45864f65bf3c4722f48d792a2e298255 206 SUPERFAMILY SSF46689 5 83 8.72E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS12535 45864f65bf3c4722f48d792a2e298255 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 4.9E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS12535 45864f65bf3c4722f48d792a2e298255 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 4.9E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS18345 b027f4480a49aa2e35453ba5b61d876b 329 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 10 148 9.0E-41 T 11-11-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS18345 b027f4480a49aa2e35453ba5b61d876b 329 Pfam PF01923 Cobalamin adenosyltransferase 4 166 4.4E-52 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS18345 b027f4480a49aa2e35453ba5b61d876b 329 SUPERFAMILY SSF89028 4 177 2.55E-51 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS18345 b027f4480a49aa2e35453ba5b61d876b 329 Gene3D G3DSA:1.20.1200.10 13 178 3.5E-53 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS18345 b027f4480a49aa2e35453ba5b61d876b 329 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 5 167 1.3E-51 T 11-11-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS18345 b027f4480a49aa2e35453ba5b61d876b 329 Pfam PF03928 Haem-degrading 194 318 2.3E-29 T 11-11-2016 IPR005624 Haem-degrading Gferi_RS18345 b027f4480a49aa2e35453ba5b61d876b 329 SUPERFAMILY SSF143744 190 323 2.22E-39 T 11-11-2016 Gferi_RS18345 b027f4480a49aa2e35453ba5b61d876b 329 PIRSF PIRSF036411 1 326 2.0E-73 T 11-11-2016 IPR009221 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, bifunctional PduO Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 375 4.0E-15 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 542 561 9.3E-31 T 11-11-2016 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 207 226 9.3E-31 T 11-11-2016 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 613 9.3E-31 T 11-11-2016 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 467 483 9.3E-31 T 11-11-2016 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 572 591 9.3E-31 T 11-11-2016 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 Gene3D G3DSA:1.10.8.60 366 431 4.2E-5 T 11-11-2016 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 454 636 6.1E-35 T 11-11-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 SUPERFAMILY SSF52540 346 446 1.72E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 SUPERFAMILY SSF52540 164 315 1.72E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 545 553 - T 11-11-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 Gene3D G3DSA:3.30.230.10 462 636 1.3E-48 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 284 299 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 SUPERFAMILY SSF54211 467 636 4.55E-41 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 Gene3D G3DSA:3.40.50.300 174 365 5.1E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 TIGRFAM TIGR02903 spore_lon_C: ATP-dependent protease, Lon family 27 636 5.9E-298 T 11-11-2016 IPR014252 Sporulation protease LonC Gferi_RS13685 c26d1b2d1597e56e20a46e551990b7ad 638 SMART SM00382 199 378 3.1E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 Gene3D G3DSA:3.50.50.60 108 332 1.8E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 Gene3D G3DSA:3.50.50.60 2 107 1.7E-19 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 321 6.2E-40 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 280 302 2.9E-9 T 11-11-2016 Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.9E-9 T 11-11-2016 Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 2.9E-9 T 11-11-2016 Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 2.9E-9 T 11-11-2016 Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 SUPERFAMILY SSF51905 2 208 6.55E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS26315 30952084ac57c08a11be2e65a165c54b 618 SUPERFAMILY SSF51905 152 337 5.64E-20 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 8 124 1.2E-47 T 11-11-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 SMART SM01400 8 124 1.0E-75 T 11-11-2016 Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 Pfam PF14572 Phosphoribosyl synthetase-associated domain 206 314 7.0E-26 T 11-11-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 132 147 - T 11-11-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 Gene3D G3DSA:3.40.50.2020 5 163 2.0E-72 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 SUPERFAMILY SSF53271 73 306 6.07E-67 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 8 315 8.4E-128 T 11-11-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 Gene3D G3DSA:3.40.50.2020 164 287 1.5E-55 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS16730 c058cead43d31f005437d363731d46d5 315 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 8 315 50.628 T 11-11-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 SUPERFAMILY SSF89082 163 252 9.68E-30 T 11-11-2016 IPR012925 TipAS antibiotic-recognition domain Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 Gene3D G3DSA:1.10.1660.10 2 57 5.3E-24 T 11-11-2016 Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 2.8E-7 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 2.8E-7 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 2.8E-7 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 Gene3D G3DSA:1.10.490.50 164 250 7.4E-31 T 11-11-2016 IPR012925 TipAS antibiotic-recognition domain Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 SUPERFAMILY SSF46955 3 112 5.86E-29 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 Gene3D G3DSA:1.10.1660.10 58 111 2.2E-7 T 11-11-2016 Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 Pfam PF07739 TipAS antibiotic-recognition domain 135 249 3.1E-38 T 11-11-2016 IPR012925 TipAS antibiotic-recognition domain Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 Pfam PF13411 MerR HTH family regulatory protein 3 70 2.7E-17 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS22460 5b30553d6428e5fbf0cbdc3b46a70e3e 254 SMART SM00422 3 72 2.8E-23 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS00760 b7835bbd155a04e853a49dd647e8ca84 335 Gene3D G3DSA:2.30.42.10 86 184 3.4E-22 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS00760 b7835bbd155a04e853a49dd647e8ca84 335 Pfam PF13180 PDZ domain 120 182 7.4E-9 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS00760 b7835bbd155a04e853a49dd647e8ca84 335 SUPERFAMILY SSF50156 78 182 2.1E-18 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS00760 b7835bbd155a04e853a49dd647e8ca84 335 Pfam PF02163 Peptidase family M50 7 320 1.4E-76 T 11-11-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 Gferi_RS00760 b7835bbd155a04e853a49dd647e8ca84 335 SMART SM00228 103 175 1.4E-6 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS00760 b7835bbd155a04e853a49dd647e8ca84 335 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 119 331 3.6E-49 T 11-11-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 Gferi_RS26390 4f2408fdb7df919860b3eac836586295 208 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 13 207 1.8E-56 T 11-11-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 Gferi_RS26390 4f2408fdb7df919860b3eac836586295 208 Gene3D G3DSA:3.40.50.620 9 208 2.5E-67 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS26390 4f2408fdb7df919860b3eac836586295 208 SUPERFAMILY SSF52374 9 208 6.26E-52 T 11-11-2016 Gferi_RS26390 4f2408fdb7df919860b3eac836586295 208 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 9 208 30.964 T 11-11-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 Gferi_RS26390 4f2408fdb7df919860b3eac836586295 208 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 11 71 1.4E-9 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Gferi_RS26390 4f2408fdb7df919860b3eac836586295 208 Pfam PF01467 Cytidylyltransferase-like 13 182 1.1E-30 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Gferi_RS24100 8ca7ecaa73765722a2eb284255ee6954 278 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 211 227 - T 11-11-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 Gferi_RS24100 8ca7ecaa73765722a2eb284255ee6954 278 SMART SM00518 3 276 1.1E-88 T 11-11-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Gferi_RS24100 8ca7ecaa73765722a2eb284255ee6954 278 Pfam PF01261 Xylose isomerase-like TIM barrel 19 235 1.2E-26 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS24100 8ca7ecaa73765722a2eb284255ee6954 278 SUPERFAMILY SSF51658 2 276 2.23E-79 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS24100 8ca7ecaa73765722a2eb284255ee6954 278 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 276 37.477 T 11-11-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Gferi_RS24100 8ca7ecaa73765722a2eb284255ee6954 278 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 4 273 3.1E-81 T 11-11-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Gferi_RS24100 8ca7ecaa73765722a2eb284255ee6954 278 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 173 180 - T 11-11-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 Gferi_RS24100 8ca7ecaa73765722a2eb284255ee6954 278 Gene3D G3DSA:3.20.20.150 1 276 9.0E-95 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS07620 dc1553e6d65b84d54186500f03480707 187 Gene3D G3DSA:1.10.357.10 2 135 2.6E-21 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS07620 dc1553e6d65b84d54186500f03480707 187 SUPERFAMILY SSF46689 3 76 2.41E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07620 dc1553e6d65b84d54186500f03480707 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.4E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07620 dc1553e6d65b84d54186500f03480707 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.4E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07620 dc1553e6d65b84d54186500f03480707 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 55 1.9E-13 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS22855 7df04e78ca994ac4aacdd1a6e400943e 335 SUPERFAMILY SSF53067 1 85 9.06E-5 T 11-11-2016 Gferi_RS22855 7df04e78ca994ac4aacdd1a6e400943e 335 SUPERFAMILY SSF53067 140 193 9.06E-5 T 11-11-2016 Gferi_RS22855 7df04e78ca994ac4aacdd1a6e400943e 335 Pfam PF05035 2-keto-3-deoxy-galactonokinase 7 304 5.7E-42 T 11-11-2016 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130 Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 PRINTS PR00955 Flagellar motor switch protein FliM signature 90 106 2.8E-23 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 PRINTS PR00955 Flagellar motor switch protein FliM signature 115 134 2.8E-23 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 2.8E-23 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 2.8E-23 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 SUPERFAMILY SSF103039 45 230 3.01E-28 T 11-11-2016 IPR028976 CheC-like domain Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 320 2.8E-100 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 253 322 6.9E-20 T 11-11-2016 IPR001543 Surface presentation of antigen (SpoA) Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 Gene3D G3DSA:3.40.1550.10 47 214 8.1E-6 T 11-11-2016 IPR028976 CheC-like domain Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 PIRSF PIRSF002888 1 328 7.4E-106 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 SUPERFAMILY SSF101801 252 327 4.05E-16 T 11-11-2016 IPR001543 Surface presentation of antigen (SpoA) Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 Gene3D G3DSA:2.30.330.10 243 325 4.7E-17 T 11-11-2016 Gferi_RS00915 be06d5e89de7e3a4063d8b384409e4e1 328 Pfam PF02154 Flagellar motor switch protein FliM 39 229 3.2E-64 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 PIRSF PIRSF001365 1 293 9.2E-92 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 4.1E-35 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 4.1E-35 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 4.1E-35 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 4.1E-35 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 SUPERFAMILY SSF51569 2 291 6.59E-103 T 11-11-2016 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 Gene3D G3DSA:3.20.20.70 2 292 2.9E-119 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 288 64.053 T 11-11-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 SMART SM01130 3 290 8.2E-137 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 287 4.2E-104 T 11-11-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 164 - T 11-11-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 11-11-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04235 fd59d1d6643869038bafa8be5cacca76 293 Pfam PF00701 Dihydrodipicolinate synthetase family 4 286 4.6E-93 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS05905 193db53d97a31a20b98bb2806e50c844 253 SMART SM00382 28 227 1.0E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05905 193db53d97a31a20b98bb2806e50c844 253 SUPERFAMILY SSF52540 3 250 1.44E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05905 193db53d97a31a20b98bb2806e50c844 253 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS05905 193db53d97a31a20b98bb2806e50c844 253 Gene3D G3DSA:3.40.50.300 3 249 3.3E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05905 193db53d97a31a20b98bb2806e50c844 253 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 250 4.0E-9 T 11-11-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Gferi_RS05905 193db53d97a31a20b98bb2806e50c844 253 Pfam PF00005 ABC transporter 19 179 3.1E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19190 a96c2c1af15def140b2a3c474792576f 150 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 17 138 2.9E-20 T 11-11-2016 IPR010181 CGCAxxGCC motif Gferi_RS26805 2128a7c4ef3ffe69940adc4dd831445f 338 Pfam PF00534 Glycosyl transferases group 1 165 300 2.9E-18 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS26805 2128a7c4ef3ffe69940adc4dd831445f 338 Gene3D G3DSA:3.40.50.2000 159 276 1.4E-11 T 11-11-2016 Gferi_RS26805 2128a7c4ef3ffe69940adc4dd831445f 338 SUPERFAMILY SSF53756 17 329 5.5E-39 T 11-11-2016 Gferi_RS24335 187384499848059b98d7988ae37af943 141 Gene3D G3DSA:1.10.10.10 2 80 1.6E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24335 187384499848059b98d7988ae37af943 141 Pfam PF01475 Ferric uptake regulator family 12 128 3.4E-31 T 11-11-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Gferi_RS24335 187384499848059b98d7988ae37af943 141 SUPERFAMILY SSF46785 3 132 4.81E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15415 60c1b2abe062cb9163ce03ec720dd9af 213 Gene3D G3DSA:1.10.357.10 4 114 2.2E-21 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS15415 60c1b2abe062cb9163ce03ec720dd9af 213 SUPERFAMILY SSF46689 7 75 8.98E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS15415 60c1b2abe062cb9163ce03ec720dd9af 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 51 2.7E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS19155 1043b91276730f2e88ec883a15377976 218 Pfam PF00805 Pentapeptide repeats (8 copies) 143 182 7.7E-7 T 11-11-2016 IPR001646 Pentapeptide repeat Gferi_RS19155 1043b91276730f2e88ec883a15377976 218 Pfam PF13599 Pentapeptide repeats (9 copies) 50 118 2.4E-11 T 11-11-2016 IPR001646 Pentapeptide repeat Gferi_RS19155 1043b91276730f2e88ec883a15377976 218 SUPERFAMILY SSF141571 40 216 8.89E-41 T 11-11-2016 Gferi_RS19155 1043b91276730f2e88ec883a15377976 218 Gene3D G3DSA:2.160.20.10 30 196 7.1E-8 T 11-11-2016 IPR012334 Pectin lyase fold Gferi_RS25200 45dddcdc02e9403c466e97521f7b67ae 320 SUPERFAMILY SSF161098 90 306 3.92E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS25200 45dddcdc02e9403c466e97521f7b67ae 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 318 3.5E-45 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS25200 45dddcdc02e9403c466e97521f7b67ae 320 Gene3D G3DSA:1.10.3720.10 91 315 1.1E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Gene3D G3DSA:3.40.190.10 219 258 7.1E-40 T 11-11-2016 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Gene3D G3DSA:3.40.190.10 36 114 7.1E-40 T 11-11-2016 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 257 6.6E-55 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Pfam PF00512 His Kinase A (phospho-acceptor) domain 443 506 5.5E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 SUPERFAMILY SSF53850 1 258 1.09E-55 T 11-11-2016 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 SUPERFAMILY SSF47384 434 506 2.75E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 SMART SM00387 550 657 1.2E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 SUPERFAMILY SSF55785 336 436 6.66E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Gene3D G3DSA:3.30.565.10 496 658 4.2E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 SMART SM00388 443 509 3.5E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Gene3D G3DSA:3.30.450.20 320 426 3.7E-6 T 11-11-2016 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Gene3D G3DSA:1.10.287.130 438 495 1.7E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 551 655 2.7E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 SMART SM00062 38 258 2.1E-48 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 Gene3D G3DSA:3.40.190.10 115 218 2.2E-14 T 11-11-2016 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 616 7.4E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 617 635 7.4E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 588 602 7.4E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 641 654 7.4E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16145 7203e6959c01b04965bdbeba07e96531 667 SUPERFAMILY SSF55874 498 655 1.44E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 522 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 541 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 460 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Gene3D G3DSA:1.20.120.160 1 129 3.2E-40 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SUPERFAMILY SSF55052 167 250 3.14E-24 T 11-11-2016 IPR015162 CheY binding Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Gene3D G3DSA:2.30.30.40 544 565 1.5E-24 T 11-11-2016 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Gene3D G3DSA:2.30.30.40 631 674 1.5E-24 T 11-11-2016 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Gene3D G3DSA:2.40.50.180 568 630 1.1E-16 T 11-11-2016 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SMART SM00387 401 544 1.3E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Gene3D G3DSA:1.10.287.560 296 357 2.2E-20 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Pfam PF07194 P2 response regulator binding domain 171 249 3.6E-26 T 11-11-2016 IPR010808 Signal transduction histidine kinase, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Gene3D G3DSA:3.30.70.1110 167 250 6.9E-30 T 11-11-2016 IPR010808 Signal transduction histidine kinase, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SUPERFAMILY SSF47384 297 357 6.28E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SUPERFAMILY SSF55874 358 542 2.88E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SUPERFAMILY SSF47226 3 125 1.28E-32 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SUPERFAMILY SSF50341 543 675 7.46E-33 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Pfam PF01627 Hpt domain 5 97 3.1E-19 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Pfam PF01584 CheW-like domain 548 674 7.5E-27 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 404 543 1.5E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SMART SM00073 3 100 4.3E-29 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Gene3D G3DSA:3.30.565.10 358 543 4.6E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SMART SM01231 296 356 6.3E-18 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 297 356 3.5E-16 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Gferi_RS00850 2037f6eb10e49467d8db0e23bdab9983 675 SMART SM00260 536 675 1.2E-39 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS05120 3cbc95b3d50d5e1e47bd41f5a07be31b 97 Gene3D G3DSA:1.10.10.10 2 66 1.1E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05120 3cbc95b3d50d5e1e47bd41f5a07be31b 97 SUPERFAMILY SSF46785 3 64 1.9E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05120 3cbc95b3d50d5e1e47bd41f5a07be31b 97 Pfam PF08279 HTH domain 7 64 1.4E-7 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 120 177 8.3E-16 T 11-11-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 SUPERFAMILY SSF81333 105 179 1.12E-15 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 Hamap MF_01396 ATP synthase subunit c [atpH]. 27 94 14.607 T 11-11-2016 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 PRINTS PR00124 ATP synthase C subunit signature 67 92 3.4E-16 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 PRINTS PR00124 ATP synthase C subunit signature 50 65 3.4E-16 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 PRINTS PR00124 ATP synthase C subunit signature 29 48 3.4E-16 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 Pfam PF00137 ATP synthase subunit C 29 91 2.1E-12 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 Pfam PF00137 ATP synthase subunit C 112 174 1.9E-15 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 Gene3D G3DSA:1.20.20.10 105 178 1.4E-18 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 Gene3D G3DSA:1.20.20.10 20 94 4.8E-19 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 Hamap MF_01396 ATP synthase subunit c [atpH]. 110 177 15.201 T 11-11-2016 Gferi_RS11045 b3465741d9ced472969db495778f8366 184 SUPERFAMILY SSF81333 22 95 9.68E-15 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Gferi_RS20625 9eddbd134119270f399e047c2adb40e8 289 Gene3D G3DSA:3.20.10.10 125 276 2.9E-31 T 11-11-2016 Gferi_RS20625 9eddbd134119270f399e047c2adb40e8 289 Gene3D G3DSA:3.30.470.10 40 105 2.4E-13 T 11-11-2016 Gferi_RS20625 9eddbd134119270f399e047c2adb40e8 289 Pfam PF01063 Amino-transferase class IV 43 254 2.1E-42 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS20625 9eddbd134119270f399e047c2adb40e8 289 ProSitePatterns PS00770 Aminotransferases class-IV signature. 181 209 - T 11-11-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS20625 9eddbd134119270f399e047c2adb40e8 289 SUPERFAMILY SSF56752 42 269 3.01E-47 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS03565 afb99a84d68654aa981158c6a62dd700 315 Pfam PF02096 60Kd inner membrane protein 25 281 4.2E-59 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Gferi_RS03565 afb99a84d68654aa981158c6a62dd700 315 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 24 281 1.3E-61 T 11-11-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Gferi_RS17180 f18464071072fc8659dd6db734da98b4 315 Gene3D G3DSA:1.10.10.10 23 55 1.5E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17180 f18464071072fc8659dd6db734da98b4 315 Pfam PF04198 Putative sugar-binding domain 66 314 3.3E-73 T 11-11-2016 IPR007324 Sugar-binding domain, putative GO:0030246 Gferi_RS17180 f18464071072fc8659dd6db734da98b4 315 SUPERFAMILY SSF100950 63 315 2.0E-70 T 11-11-2016 Gferi_RS17180 f18464071072fc8659dd6db734da98b4 315 Pfam PF13545 Crp-like helix-turn-helix domain 23 56 5.2E-7 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS17180 f18464071072fc8659dd6db734da98b4 315 Gene3D G3DSA:3.40.50.1360 62 315 3.1E-78 T 11-11-2016 Gferi_RS17180 f18464071072fc8659dd6db734da98b4 315 SUPERFAMILY SSF46785 12 60 3.4E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12435 5f27930c35743bc6254c128a3cfad910 396 Gene3D G3DSA:2.40.50.100 216 247 4.7E-14 T 11-11-2016 Gferi_RS12435 5f27930c35743bc6254c128a3cfad910 396 Gene3D G3DSA:2.40.50.100 62 88 4.7E-14 T 11-11-2016 Gferi_RS12435 5f27930c35743bc6254c128a3cfad910 396 SUPERFAMILY SSF111369 47 111 3.79E-5 T 11-11-2016 Gferi_RS12435 5f27930c35743bc6254c128a3cfad910 396 Gene3D G3DSA:1.20.1600.10 89 182 6.4E-5 T 11-11-2016 Gferi_RS12435 5f27930c35743bc6254c128a3cfad910 396 Gene3D G3DSA:1.20.1600.10 23 40 6.4E-5 T 11-11-2016 Gferi_RS12435 5f27930c35743bc6254c128a3cfad910 396 Pfam PF13533 Biotin-lipoyl like 62 102 7.9E-8 T 11-11-2016 Gferi_RS12435 5f27930c35743bc6254c128a3cfad910 396 Pfam PF13437 HlyD family secretion protein 218 309 1.4E-10 T 11-11-2016 Gferi_RS07070 cae88d6c440e569db75a88fb1cf080d3 196 Gene3D G3DSA:3.90.640.20 108 186 1.3E-18 T 11-11-2016 IPR021729 Domain of unknown function DUF3298 Gferi_RS07070 cae88d6c440e569db75a88fb1cf080d3 196 Pfam PF11738 Protein of unknown function (DUF3298) 108 178 5.2E-17 T 11-11-2016 IPR021729 Domain of unknown function DUF3298 Gferi_RS07070 cae88d6c440e569db75a88fb1cf080d3 196 Gene3D G3DSA:3.30.565.40 13 105 1.2E-12 T 11-11-2016 IPR025303 Domain of unknown function DUF4163 Gferi_RS07070 cae88d6c440e569db75a88fb1cf080d3 196 Pfam PF13739 Domain of unknown function (DUF4163) 14 90 1.4E-9 T 11-11-2016 IPR025303 Domain of unknown function DUF4163 Gferi_RS13095 591f87eda2d5f62e718e7476c5d03e0e 331 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 328 3.6E-154 T 11-11-2016 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 Gferi_RS13095 591f87eda2d5f62e718e7476c5d03e0e 331 SUPERFAMILY SSF82549 11 328 3.4E-127 T 11-11-2016 Gferi_RS13095 591f87eda2d5f62e718e7476c5d03e0e 331 Gene3D G3DSA:3.30.1180.20 185 328 3.2E-58 T 11-11-2016 Gferi_RS13095 591f87eda2d5f62e718e7476c5d03e0e 331 Pfam PF02733 Dak1 domain 17 327 2.3E-134 T 11-11-2016 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS13095 591f87eda2d5f62e718e7476c5d03e0e 331 Gene3D G3DSA:3.40.50.10440 11 184 3.6E-76 T 11-11-2016 Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 Gene3D G3DSA:3.40.50.300 290 556 4.5E-101 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 SUPERFAMILY SSF160246 4 142 1.44E-44 T 11-11-2016 Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 41 146 8.9E-25 T 11-11-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 378 392 - T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 Pfam PF00437 Type II/IV secretion system protein 185 450 2.0E-83 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 80 554 3.7E-195 T 11-11-2016 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 SUPERFAMILY SSF52540 168 553 2.68E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 Gene3D G3DSA:3.30.450.90 160 283 5.4E-52 T 11-11-2016 Gferi_RS00450 ec80bbbb2847ce95d91b6b7bd0dc1e92 558 SMART SM00382 311 432 1.0E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05295 c322012f673560a93b3ca87c23278165 472 SUPERFAMILY SSF55874 368 461 2.62E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05295 c322012f673560a93b3ca87c23278165 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 374 461 2.7E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05295 c322012f673560a93b3ca87c23278165 472 Pfam PF07730 Histidine kinase 265 324 1.3E-8 T 11-11-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Gferi_RS05295 c322012f673560a93b3ca87c23278165 472 Gene3D G3DSA:3.30.565.10 352 464 1.6E-11 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05295 c322012f673560a93b3ca87c23278165 472 SMART SM00387 371 464 3.0E-11 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19890 bdf8a687420dcbc2948bdf3da897ed93 343 SMART SM00909 233 322 6.5E-11 T 11-11-2016 IPR019606 GerMN domain Gferi_RS19890 bdf8a687420dcbc2948bdf3da897ed93 343 Pfam PF10646 Sporulation and spore germination 206 318 8.7E-12 T 11-11-2016 IPR019606 GerMN domain Gferi_RS12385 d4debe4be149d8581dc1b58d37490cc5 311 SUPERFAMILY SSF46785 4 56 1.03E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12385 d4debe4be149d8581dc1b58d37490cc5 311 Pfam PF08279 HTH domain 5 54 5.3E-12 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS12385 d4debe4be149d8581dc1b58d37490cc5 311 PIRSF PIRSF016838 1 311 4.1E-33 T 11-11-2016 IPR028349 Protein PafC Gferi_RS12385 d4debe4be149d8581dc1b58d37490cc5 311 Pfam PF13280 WYL domain 137 305 2.6E-41 T 11-11-2016 IPR026881 WYL domain Gferi_RS12385 d4debe4be149d8581dc1b58d37490cc5 311 Gene3D G3DSA:1.10.10.10 2 57 1.2E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16350 4918245f472af942100fded91e8b60f2 267 Gene3D G3DSA:3.20.20.20 1 259 2.0E-84 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16350 4918245f472af942100fded91e8b60f2 267 SUPERFAMILY SSF51717 1 259 1.44E-75 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16350 4918245f472af942100fded91e8b60f2 267 Pfam PF00809 Pterin binding enzyme 6 230 1.3E-31 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS15810 e931017741c2614e95b4f8d598886867 354 Gene3D G3DSA:1.10.40.50 263 322 2.2E-22 T 11-11-2016 Gferi_RS15810 e931017741c2614e95b4f8d598886867 354 Gene3D G3DSA:3.40.50.300 103 259 1.5E-39 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15810 e931017741c2614e95b4f8d598886867 354 SUPERFAMILY SSF50249 25 90 1.2E-8 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS15810 e931017741c2614e95b4f8d598886867 354 Pfam PF03193 Protein of unknown function, DUF258 86 261 5.8E-48 T 11-11-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 Gferi_RS15810 e931017741c2614e95b4f8d598886867 354 Gene3D G3DSA:2.40.50.140 26 88 6.9E-9 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS15810 e931017741c2614e95b4f8d598886867 354 SUPERFAMILY SSF52540 104 320 1.98E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15810 e931017741c2614e95b4f8d598886867 354 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 67 317 1.0E-49 T 11-11-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 Gferi_RS15810 e931017741c2614e95b4f8d598886867 354 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 25 324 33.09 T 11-11-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 Gene3D G3DSA:1.10.10.60 561 619 3.8E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 SUPERFAMILY SSF55785 7 58 7.12E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 Gene3D G3DSA:3.30.450.20 230 286 5.6E-8 T 11-11-2016 Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 Gene3D G3DSA:3.30.450.20 9 68 5.6E-8 T 11-11-2016 Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 Pfam PF00158 Sigma-54 interaction domain 311 478 2.5E-66 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 335 348 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 SUPERFAMILY SSF52540 311 553 7.83E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 Gene3D G3DSA:3.40.50.300 308 484 2.6E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 Gene3D G3DSA:1.10.8.60 485 556 2.9E-20 T 11-11-2016 Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 SMART SM00382 331 475 2.6E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 SUPERFAMILY SSF46689 523 619 5.82E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 525 534 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS05475 0af9f27da9b3b64a657859f4424bb3fa 625 Pfam PF02954 Bacterial regulatory protein, Fis family 576 616 2.0E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS08070 5f9380298d7535901970f907ff24bbac 222 SMART SM00345 10 68 6.8E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS08070 5f9380298d7535901970f907ff24bbac 222 Pfam PF07729 FCD domain 84 200 5.4E-16 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS08070 5f9380298d7535901970f907ff24bbac 222 SUPERFAMILY SSF46785 5 72 2.25E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08070 5f9380298d7535901970f907ff24bbac 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 68 3.1E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS08070 5f9380298d7535901970f907ff24bbac 222 Gene3D G3DSA:1.10.10.10 7 68 2.8E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08070 5f9380298d7535901970f907ff24bbac 222 Gene3D G3DSA:1.20.120.530 73 208 2.0E-23 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS08070 5f9380298d7535901970f907ff24bbac 222 SUPERFAMILY SSF48008 74 208 1.15E-18 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS08070 5f9380298d7535901970f907ff24bbac 222 SMART SM00895 78 202 1.3E-7 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS11530 f2d137e60096b14bdd20d434b1fda4d4 417 Pfam PF12544 Lysine-2,3-aminomutase 313 415 8.8E-41 T 11-11-2016 IPR025895 Lysine-2,3-aminomutase, C-terminal domain Gferi_RS11530 f2d137e60096b14bdd20d434b1fda4d4 417 Gene3D G3DSA:3.20.20.70 104 341 9.7E-23 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS11530 f2d137e60096b14bdd20d434b1fda4d4 417 TIGRFAM TIGR03820 lys_2_3_AblA: lysine-2,3-aminomutase 13 413 1.4E-189 T 11-11-2016 IPR022459 Lysine-2,3-aminomutase KEGG: 00310+5.4.3.2 Gferi_RS11530 f2d137e60096b14bdd20d434b1fda4d4 417 SUPERFAMILY SSF102114 106 351 1.57E-34 T 11-11-2016 Gferi_RS11530 f2d137e60096b14bdd20d434b1fda4d4 417 PIRSF PIRSF004911 1 401 6.7E-168 T 11-11-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Gferi_RS11530 f2d137e60096b14bdd20d434b1fda4d4 417 Pfam PF04055 Radical SAM superfamily 122 269 4.4E-11 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS11530 f2d137e60096b14bdd20d434b1fda4d4 417 TIGRFAM TIGR00238 TIGR00238: KamA family protein 6 334 4.2E-120 T 11-11-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 Gene3D G3DSA:3.30.450.20 4 107 5.0E-6 T 11-11-2016 Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 SUPERFAMILY SSF52540 150 389 1.42E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 233 248 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 417 463 1.4E-9 T 11-11-2016 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 SUPERFAMILY SSF55785 10 114 2.28E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 Gene3D G3DSA:1.10.8.60 320 390 9.7E-19 T 11-11-2016 Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 SMART SM00382 166 318 1.2E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 Gene3D G3DSA:3.40.50.300 148 319 1.2E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 Pfam PF00158 Sigma-54 interaction domain 148 313 6.9E-68 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 SUPERFAMILY SSF46689 411 462 1.08E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 362 371 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS18155 73b3e60de20361338593804da846c8bc 465 Gene3D G3DSA:1.10.10.60 411 462 1.4E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS02960 b3b91f8cc2d955d428ebfc5d63e08ba9 507 SUPERFAMILY SSF48557 3 498 5.49E-147 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 Gferi_RS02960 b3b91f8cc2d955d428ebfc5d63e08ba9 507 Pfam PF00221 Aromatic amino acid lyase 13 470 2.8E-138 T 11-11-2016 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Gferi_RS02960 b3b91f8cc2d955d428ebfc5d63e08ba9 507 Gene3D G3DSA:1.10.275.10 5 197 2.3E-62 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal Gferi_RS02960 b3b91f8cc2d955d428ebfc5d63e08ba9 507 Gene3D G3DSA:1.20.200.10 200 505 9.9E-79 T 11-11-2016 Gferi_RS02195 4c5b722d8dd5192e7abace63f81d30b8 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 145 23.973 T 11-11-2016 IPR003791 Protein of unknown function UPF0178 Gferi_RS02195 4c5b722d8dd5192e7abace63f81d30b8 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 15 143 6.3E-35 T 11-11-2016 IPR003791 Protein of unknown function UPF0178 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 PIRSF PIRSF017184 1 517 1.2E-153 T 11-11-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 4 217 1.4E-49 T 11-11-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 SUPERFAMILY SSF53613 228 514 4.68E-80 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 Pfam PF01256 Carbohydrate kinase 254 507 1.9E-60 T 11-11-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 Pfam PF03853 YjeF-related protein N-terminus 27 195 5.7E-45 T 11-11-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 451 461 - T 11-11-2016 IPR017953 Carbohydrate kinase, predicted, conserved site Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 231 511 1.7E-71 T 11-11-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 231 516 24.876 T 11-11-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 5 216 26.477 T 11-11-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 SUPERFAMILY SSF64153 1 253 9.42E-65 T 11-11-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 Gene3D G3DSA:3.40.1190.20 238 514 4.0E-93 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS20465 75d9b18a66722eb91a58ce20f86c2ac2 517 Gene3D G3DSA:3.40.50.10260 1 237 1.1E-69 T 11-11-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Gferi_RS23105 89cbf8224a95e1c1923dd412cbe39270 245 PIRSF PIRSF005426 1 245 1.0E-91 T 11-11-2016 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 Gferi_RS23105 89cbf8224a95e1c1923dd412cbe39270 245 Gene3D G3DSA:3.40.109.10 1 244 2.8E-78 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS23105 89cbf8224a95e1c1923dd412cbe39270 245 SUPERFAMILY SSF55469 1 244 6.94E-73 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS23105 89cbf8224a95e1c1923dd412cbe39270 245 Pfam PF00881 Nitroreductase family 9 163 1.4E-21 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS04755 434725c0236611c51cb27492991a9d56 175 SUPERFAMILY SSF55729 1 161 2.19E-32 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS04755 434725c0236611c51cb27492991a9d56 175 Pfam PF00583 Acetyltransferase (GNAT) family 59 151 5.2E-16 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS04755 434725c0236611c51cb27492991a9d56 175 Gene3D G3DSA:3.40.630.30 1 175 2.9E-39 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS23085 82b40ed74e7413ca403880aa11b7a4c1 192 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 46 - T 11-11-2016 IPR010916 TonB box, conserved site Gferi_RS23085 82b40ed74e7413ca403880aa11b7a4c1 192 Gene3D G3DSA:3.40.50.620 33 157 4.6E-29 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS23085 82b40ed74e7413ca403880aa11b7a4c1 192 Pfam PF02698 DUF218 domain 39 181 1.1E-31 T 11-11-2016 IPR003848 Domain of unknown function DUF218 Gferi_RS17595 6b2bee16ae73bdb97a5fc4823734eb22 211 Gene3D G3DSA:3.40.50.280 75 208 1.6E-46 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS17595 6b2bee16ae73bdb97a5fc4823734eb22 211 Pfam PF02607 B12 binding domain 4 76 5.2E-18 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17595 6b2bee16ae73bdb97a5fc4823734eb22 211 Gene3D G3DSA:1.10.1240.10 1 74 4.1E-21 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17595 6b2bee16ae73bdb97a5fc4823734eb22 211 Pfam PF02310 B12 binding domain 91 198 3.7E-22 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS17595 6b2bee16ae73bdb97a5fc4823734eb22 211 SMART SM01018 1 84 1.1E-28 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17595 6b2bee16ae73bdb97a5fc4823734eb22 211 SUPERFAMILY SSF52242 69 207 4.45E-41 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS17595 6b2bee16ae73bdb97a5fc4823734eb22 211 SUPERFAMILY SSF47644 1 81 2.22E-22 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS25135 420ced68df5822d8162e8063c14913b8 166 Pfam PF01047 MarR family 38 94 3.9E-9 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS25135 420ced68df5822d8162e8063c14913b8 166 SUPERFAMILY SSF46785 27 145 4.85E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25135 420ced68df5822d8162e8063c14913b8 166 Gene3D G3DSA:1.10.10.10 34 148 1.2E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25135 420ced68df5822d8162e8063c14913b8 166 SMART SM00347 29 129 4.2E-17 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 369 378 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 242 257 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 SUPERFAMILY SSF46689 369 463 1.15E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 Pfam PF02954 Bacterial regulatory protein, Fis family 421 461 2.2E-14 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 SUPERFAMILY SSF55785 7 111 4.36E-15 T 11-11-2016 IPR000014 PAS domain Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 SUPERFAMILY SSF52540 156 399 1.57E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 127 4.3E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 Pfam PF08448 PAS fold 14 121 1.9E-8 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 Pfam PF00158 Sigma-54 interaction domain 157 322 6.8E-63 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 SMART SM00382 177 323 3.2E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 181 194 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 Gene3D G3DSA:1.10.8.60 329 404 8.0E-26 T 11-11-2016 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 Gene3D G3DSA:1.10.10.60 405 463 2.3E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 427 444 4.9E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 464 4.9E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 Gene3D G3DSA:3.40.50.300 154 328 8.7E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 Gene3D G3DSA:3.30.450.20 7 132 7.0E-16 T 11-11-2016 Gferi_RS11540 7143a4a9a4bdbef040e33486723c9f03 465 SMART SM00091 8 74 1.6E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Gene3D G3DSA:1.10.287.610 2 69 1.4E-29 T 11-11-2016 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SMART SM00278 538 557 0.55 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SMART SM00278 474 493 36.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SMART SM00278 440 459 320.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Gene3D G3DSA:3.30.470.30 119 248 4.4E-51 T 11-11-2016 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 5 313 3.0E-126 T 11-11-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Gene3D G3DSA:1.10.150.20 429 497 3.6E-29 T 11-11-2016 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 403 428 1.5E-7 T 11-11-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Gene3D G3DSA:1.10.150.20 499 578 4.9E-26 T 11-11-2016 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SUPERFAMILY SSF50249 313 395 1.58E-28 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 11-11-2016 IPR018239 NAD-dependent DNA ligase, active site Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Hamap MF_01588 DNA ligase [ligA]. 4 662 52.632 T 11-11-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SUPERFAMILY SSF56091 2 311 2.73E-120 T 11-11-2016 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SMART SM00532 5 442 1.3E-260 T 11-11-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SMART SM00292 588 663 3.3E-12 T 11-11-2016 IPR001357 BRCT domain Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 PIRSF PIRSF001604 1 663 4.5E-260 T 11-11-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 657 3.2E-263 T 11-11-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Pfam PF14520 Helix-hairpin-helix domain 440 495 3.5E-5 T 11-11-2016 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 589 656 8.6E-15 T 11-11-2016 IPR001357 BRCT domain Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SUPERFAMILY SSF52113 587 663 3.2E-20 T 11-11-2016 IPR001357 BRCT domain Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Gene3D G3DSA:3.40.50.10190 587 662 2.5E-26 T 11-11-2016 IPR001357 BRCT domain Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Pfam PF12826 Helix-hairpin-helix motif 504 567 1.4E-19 T 11-11-2016 Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Gene3D G3DSA:2.40.50.140 315 386 1.7E-32 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 SUPERFAMILY SSF47781 399 578 2.04E-57 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 326 341 - T 11-11-2016 IPR033136 NAD-dependent DNA ligase, conserved site Gferi_RS09540 9606ccca704c5e7a4adcfbb4088a917b 663 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 317 393 7.2E-35 T 11-11-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 Gferi_RS15885 c485e2e4ed486853823b4d902100784d 482 Gene3D G3DSA:3.40.309.10 232 279 9.2E-21 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS15885 c485e2e4ed486853823b4d902100784d 482 Gene3D G3DSA:3.40.309.10 316 407 9.2E-21 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS15885 c485e2e4ed486853823b4d902100784d 482 Gene3D G3DSA:3.40.605.10 9 231 1.7E-26 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS15885 c485e2e4ed486853823b4d902100784d 482 Pfam PF00171 Aldehyde dehydrogenase family 12 273 1.2E-24 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS15885 c485e2e4ed486853823b4d902100784d 482 TIGRFAM TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating) 6 463 2.4E-214 T 11-11-2016 IPR013357 Acetaldehyde dehydrogenase, acetylating Gferi_RS15885 c485e2e4ed486853823b4d902100784d 482 SUPERFAMILY SSF53720 12 453 9.03E-77 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS05025 64b43da135c23368eb8aa356afb1d42d 304 Gene3D G3DSA:3.20.20.140 5 91 3.0E-42 T 11-11-2016 Gferi_RS05025 64b43da135c23368eb8aa356afb1d42d 304 Gene3D G3DSA:3.20.20.140 179 275 3.0E-42 T 11-11-2016 Gferi_RS05025 64b43da135c23368eb8aa356afb1d42d 304 SUPERFAMILY SSF89550 187 295 9.81E-47 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS05025 64b43da135c23368eb8aa356afb1d42d 304 SUPERFAMILY SSF89550 5 84 9.81E-47 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS05025 64b43da135c23368eb8aa356afb1d42d 304 SMART SM00481 5 71 4.3E-20 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS05025 64b43da135c23368eb8aa356afb1d42d 304 Pfam PF02811 PHP domain 6 110 1.9E-12 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 SUPERFAMILY SSF55060 183 320 5.35E-22 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 Pfam PF08544 GHMP kinases C terminal 232 304 1.4E-7 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 Pfam PF00288 GHMP kinases N terminal domain 92 155 1.1E-9 T 11-11-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 94 105 - T 11-11-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 SUPERFAMILY SSF54211 1 174 1.59E-30 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 PRINTS PR00960 LmbP protein signature 269 288 1.1E-40 T 11-11-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 PRINTS PR00960 LmbP protein signature 6 21 1.1E-40 T 11-11-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 PRINTS PR00960 LmbP protein signature 241 265 1.1E-40 T 11-11-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 PRINTS PR00960 LmbP protein signature 135 154 1.1E-40 T 11-11-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 PRINTS PR00960 LmbP protein signature 93 114 1.1E-40 T 11-11-2016 IPR001174 Galactokinase/homoserine kinase GO:0005524|GO:0008152|GO:0016301 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 Gene3D G3DSA:3.30.70.890 183 305 2.5E-13 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 Gene3D G3DSA:3.30.230.10 2 164 7.1E-23 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS13895 348e693de34f8e47ee8f6c2cde1867c3 323 PIRSF PIRSF036406 1 321 7.5E-87 T 11-11-2016 IPR014606 D,D-heptose 7-phosphate kinase KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.168|MetaCyc: PWY-6478 Gferi_RS25510 9a80c13302e2a2f8f748a292aa0dadfc 348 Gene3D G3DSA:3.40.50.2300 162 335 5.7E-45 T 11-11-2016 Gferi_RS25510 9a80c13302e2a2f8f748a292aa0dadfc 348 SUPERFAMILY SSF53822 41 335 1.41E-75 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS25510 9a80c13302e2a2f8f748a292aa0dadfc 348 Gene3D G3DSA:3.40.50.2300 42 161 1.5E-34 T 11-11-2016 Gferi_RS25510 9a80c13302e2a2f8f748a292aa0dadfc 348 Pfam PF13407 Periplasmic binding protein domain 45 302 5.9E-63 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 Gene3D G3DSA:3.30.565.10 197 369 1.3E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 SMART SM00388 144 211 3.0E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 259 369 5.2E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 SUPERFAMILY SSF47384 120 212 1.39E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 SUPERFAMILY SSF55874 200 369 8.77E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 Pfam PF00512 His Kinase A (phospho-acceptor) domain 145 209 3.4E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 SMART SM00387 258 371 4.7E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 Pfam PF00672 HAMP domain 77 133 5.7E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 310 3.7E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 349 3.7E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 314 324 3.7E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 368 3.7E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 SMART SM00304 84 136 5.2E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 SUPERFAMILY SSF158472 86 133 9.02E-10 T 11-11-2016 Gferi_RS14765 f1e4c79e2a560c011e828481a83f7f17 371 Gene3D G3DSA:1.10.287.130 141 196 9.3E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20755 122c5e159c503c0eee302f8266351b01 163 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 143 3.1E-34 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20755 122c5e159c503c0eee302f8266351b01 163 Gene3D G3DSA:3.40.980.10 2 160 3.1E-51 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20755 122c5e159c503c0eee302f8266351b01 163 Pfam PF00994 Probable molybdopterin binding domain 5 147 3.9E-34 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20755 122c5e159c503c0eee302f8266351b01 163 SMART SM00852 5 149 1.2E-24 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20755 122c5e159c503c0eee302f8266351b01 163 SUPERFAMILY SSF53218 2 154 1.57E-43 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS21395 5ec3066c9b6bfbbe387f4efe48c46d2a 204 SUPERFAMILY SSF103473 8 170 3.92E-19 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS21395 5ec3066c9b6bfbbe387f4efe48c46d2a 204 Pfam PF07690 Major Facilitator Superfamily 17 162 1.1E-10 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS21395 5ec3066c9b6bfbbe387f4efe48c46d2a 204 Gene3D G3DSA:1.20.1250.20 9 170 4.8E-14 T 11-11-2016 Gferi_RS10535 f540544b29282ef3b88f3f4625e24026 212 Gene3D G3DSA:3.40.50.720 79 211 5.7E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10535 f540544b29282ef3b88f3f4625e24026 212 Gene3D G3DSA:1.10.10.10 7 77 8.2E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10535 f540544b29282ef3b88f3f4625e24026 212 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 3 211 35.617 T 11-11-2016 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 Gferi_RS10535 f540544b29282ef3b88f3f4625e24026 212 SUPERFAMILY SSF46785 11 81 3.88E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10535 f540544b29282ef3b88f3f4625e24026 212 Pfam PF02629 CoA binding domain 83 181 1.7E-20 T 11-11-2016 IPR003781 CoA-binding GO:0048037 Gferi_RS10535 f540544b29282ef3b88f3f4625e24026 212 SUPERFAMILY SSF51735 84 209 1.18E-26 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10535 f540544b29282ef3b88f3f4625e24026 212 Pfam PF06971 Putative DNA-binding protein N-terminus 7 55 1.3E-21 T 11-11-2016 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 Gferi_RS10535 f540544b29282ef3b88f3f4625e24026 212 SMART SM00881 81 182 3.6E-16 T 11-11-2016 IPR003781 CoA-binding GO:0048037 Gferi_RS08850 bec7716fbde61eb0d450de0842238cb3 217 Pfam PF07729 FCD domain 80 199 1.3E-22 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS08850 bec7716fbde61eb0d450de0842238cb3 217 SUPERFAMILY SSF46785 6 92 1.27E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08850 bec7716fbde61eb0d450de0842238cb3 217 Gene3D G3DSA:1.20.120.530 74 212 2.9E-29 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS08850 bec7716fbde61eb0d450de0842238cb3 217 SUPERFAMILY SSF48008 74 209 4.71E-22 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS08850 bec7716fbde61eb0d450de0842238cb3 217 SMART SM00345 10 68 6.7E-18 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS08850 bec7716fbde61eb0d450de0842238cb3 217 Gene3D G3DSA:1.10.10.10 6 69 5.5E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08850 bec7716fbde61eb0d450de0842238cb3 217 SMART SM00895 78 202 6.8E-8 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS08850 bec7716fbde61eb0d450de0842238cb3 217 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 68 3.4E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS13345 2783a71b4cde26c4dd327290ad02af90 173 Gene3D G3DSA:3.40.630.30 5 170 1.4E-30 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS13345 2783a71b4cde26c4dd327290ad02af90 173 Pfam PF13302 Acetyltransferase (GNAT) domain 39 147 1.2E-15 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS13345 2783a71b4cde26c4dd327290ad02af90 173 SUPERFAMILY SSF55729 4 170 1.35E-30 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 Gene3D G3DSA:3.40.50.1780 137 244 4.6E-24 T 11-11-2016 Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 Gene3D G3DSA:3.40.50.1780 43 98 4.6E-24 T 11-11-2016 Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 SUPERFAMILY SSF54862 9 57 4.41E-15 T 11-11-2016 Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 SUPERFAMILY SSF53920 40 320 2.22E-46 T 11-11-2016 IPR009016 Iron hydrogenase Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 12 23 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 41 52 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 Gene3D G3DSA:3.30.70.20 4 42 1.1E-11 T 11-11-2016 Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 74 297 8.9E-37 T 11-11-2016 IPR004108 Iron hydrogenase, large subunit, C-terminal Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 Gene3D G3DSA:3.30.450.20 405 507 1.6E-4 T 11-11-2016 Gferi_RS06300 8bd6083c11a70323df86eb878a3bc08b 569 Pfam PF04060 Putative Fe-S cluster 371 400 2.8E-7 T 11-11-2016 IPR007202 4Fe-4S domain GO:0051536 Gferi_RS18500 eae89ecd9fb810f6f50ac168bdde04d0 364 TIGRFAM TIGR00937 2A51: chromate efflux transporter 8 357 1.8E-100 T 11-11-2016 IPR014047 Chromate transporter, long chain Gferi_RS18500 eae89ecd9fb810f6f50ac168bdde04d0 364 Pfam PF02417 Chromate transporter 195 358 5.1E-43 T 11-11-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 Gferi_RS18500 eae89ecd9fb810f6f50ac168bdde04d0 364 Pfam PF02417 Chromate transporter 4 167 8.5E-42 T 11-11-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 Gferi_RS18500 eae89ecd9fb810f6f50ac168bdde04d0 364 PIRSF PIRSF004810 1 364 1.1E-107 T 11-11-2016 IPR014047 Chromate transporter, long chain Gferi_RS06315 e161a994c33cea7f5a87562ccab17528 708 TIGRFAM TIGR00316 cdhC: CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit 296 702 8.9E-137 T 11-11-2016 IPR004461 CO dehydrogenase/acetyl-CoA synthase complex beta subunit GO:0006084|GO:0018492 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|KEGG: 00720+2.3.1.169|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 Gferi_RS06315 e161a994c33cea7f5a87562ccab17528 708 Gene3D G3DSA:3.40.970.20 473 563 2.0E-43 T 11-11-2016 Gferi_RS06315 e161a994c33cea7f5a87562ccab17528 708 Pfam PF03598 CO dehydrogenase/acetyl-CoA synthase complex beta subunit 297 452 5.9E-73 T 11-11-2016 IPR004461 CO dehydrogenase/acetyl-CoA synthase complex beta subunit GO:0006084|GO:0018492 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|KEGG: 00720+2.3.1.169|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 Gferi_RS06315 e161a994c33cea7f5a87562ccab17528 708 SUPERFAMILY SSF56821 3 707 9.16E-239 T 11-11-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 Gferi_RS06315 e161a994c33cea7f5a87562ccab17528 708 Gene3D G3DSA:3.40.1470.10 578 706 8.7E-55 T 11-11-2016 Gferi_RS06315 e161a994c33cea7f5a87562ccab17528 708 Gene3D G3DSA:1.10.8.190 1 101 3.2E-37 T 11-11-2016 Gferi_RS06315 e161a994c33cea7f5a87562ccab17528 708 Gene3D G3DSA:3.30.1650.10 296 471 7.3E-76 T 11-11-2016 Gferi_RS06315 e161a994c33cea7f5a87562ccab17528 708 Gene3D G3DSA:3.40.50.2030 103 288 5.4E-79 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS19685 8b1cdc306b9ed33279b158e274ba0d98 127 SUPERFAMILY SSF142906 1 116 2.35E-37 T 11-11-2016 Gferi_RS19685 8b1cdc306b9ed33279b158e274ba0d98 127 Pfam PF04237 YjbR 11 103 8.4E-22 T 11-11-2016 IPR007351 Uncharacterised protein YjbR Gferi_RS18270 628697aba6bc5433bad83dd47a64d633 485 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 277 469 5.3E-44 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS18270 628697aba6bc5433bad83dd47a64d633 485 SUPERFAMILY SSF58104 189 482 1.05E-61 T 11-11-2016 Gferi_RS18270 628697aba6bc5433bad83dd47a64d633 485 Gene3D G3DSA:1.10.287.950 421 472 2.4E-49 T 11-11-2016 Gferi_RS18270 628697aba6bc5433bad83dd47a64d633 485 Gene3D G3DSA:1.10.287.950 226 378 2.4E-49 T 11-11-2016 Gferi_RS18270 628697aba6bc5433bad83dd47a64d633 485 SMART SM00283 211 479 5.0E-43 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS10785 ff7a769ec05805abd497cd2c5dd8a4f2 165 Pfam PF05130 FlgN protein 1 149 5.7E-26 T 11-11-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Gferi_RS10785 ff7a769ec05805abd497cd2c5dd8a4f2 165 Gene3D G3DSA:1.20.58.300 3 129 1.1E-12 T 11-11-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Gferi_RS10785 ff7a769ec05805abd497cd2c5dd8a4f2 165 SUPERFAMILY SSF140566 4 133 2.35E-17 T 11-11-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Gferi_RS06105 44651185e1e064ddfd35df47f7620909 199 Gene3D G3DSA:3.40.50.300 5 198 4.8E-89 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06105 44651185e1e064ddfd35df47f7620909 199 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 25 196 38.565 T 11-11-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Gferi_RS06105 44651185e1e064ddfd35df47f7620909 199 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 9 192 2.3E-83 T 11-11-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 Gferi_RS06105 44651185e1e064ddfd35df47f7620909 199 SUPERFAMILY SSF52540 25 193 1.92E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06105 44651185e1e064ddfd35df47f7620909 199 Pfam PF01583 Adenylylsulphate kinase 26 179 1.4E-73 T 11-11-2016 Gferi_RS20925 33a56e1def94d8115ccce3790fc5498d 141 Gene3D G3DSA:3.90.79.10 5 133 1.4E-28 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS20925 33a56e1def94d8115ccce3790fc5498d 141 Pfam PF00293 NUDIX domain 9 128 2.4E-17 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS20925 33a56e1def94d8115ccce3790fc5498d 141 ProSitePatterns PS00893 Nudix box signature. 32 53 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS20925 33a56e1def94d8115ccce3790fc5498d 141 SUPERFAMILY SSF55811 6 132 8.67E-25 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS21160 5c8463dede257e0ab784564aaef7e792 502 Pfam PF00704 Glycosyl hydrolases family 18 281 433 5.7E-9 T 11-11-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 Gferi_RS21160 5c8463dede257e0ab784564aaef7e792 502 SUPERFAMILY SSF49785 31 173 3.91E-7 T 11-11-2016 IPR008979 Galactose-binding domain-like Gferi_RS21160 5c8463dede257e0ab784564aaef7e792 502 SUPERFAMILY SSF51445 216 472 1.15E-9 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS21160 5c8463dede257e0ab784564aaef7e792 502 Gene3D G3DSA:2.60.120.260 30 175 1.1E-7 T 11-11-2016 IPR008979 Galactose-binding domain-like Gferi_RS21160 5c8463dede257e0ab784564aaef7e792 502 Gene3D G3DSA:3.20.20.80 306 407 3.7E-9 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Gene3D G3DSA:3.30.70.1430 40 138 3.4E-26 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Gene3D G3DSA:1.20.1640.10 299 492 4.0E-56 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 SUPERFAMILY SSF82866 797 1019 4.19E-53 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 SUPERFAMILY SSF82693 563 657 1.94E-15 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 435 458 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 382 406 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 354 375 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 460 483 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 PRINTS PR00702 Acriflavin resistance protein family signature 327 350 1.9E-55 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Gene3D G3DSA:3.30.70.1320 139 177 1.4E-15 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Gene3D G3DSA:3.30.70.1320 268 298 1.4E-15 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Pfam PF00873 AcrB/AcrD/AcrF family 4 1016 1.3E-269 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Gene3D G3DSA:1.10.3850.10 803 1018 7.0E-65 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 SUPERFAMILY SSF82714 182 263 6.54E-16 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Gene3D G3DSA:3.30.2090.10 713 800 1.0E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 SUPERFAMILY SSF82866 288 487 1.96E-44 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 SUPERFAMILY SSF82693 40 134 1.39E-24 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 SUPERFAMILY SSF82693 135 180 1.7E-18 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 SUPERFAMILY SSF82693 266 321 1.7E-18 T 11-11-2016 Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Gene3D G3DSA:3.30.2090.10 182 264 3.7E-17 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 SUPERFAMILY SSF82714 713 796 4.58E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS09030 0d0798a768e5fd3f8e47b3aef22ea764 1035 Gene3D G3DSA:3.30.70.1430 565 656 9.9E-13 T 11-11-2016 Gferi_RS24725 f9dac91475125ad74dd56aa0e03c2465 190 Pfam PF01613 Flavin reductase like domain 13 173 2.5E-20 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS24725 f9dac91475125ad74dd56aa0e03c2465 190 Gene3D G3DSA:2.30.110.10 12 180 1.3E-39 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS24725 f9dac91475125ad74dd56aa0e03c2465 190 SUPERFAMILY SSF50475 12 178 4.17E-37 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS24725 f9dac91475125ad74dd56aa0e03c2465 190 SMART SM00903 10 155 2.0E-12 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS16775 beb64cc1b5d0a18f68086206a8d72a7f 80 PIRSF PIRSF038881 1 80 1.9E-28 T 11-11-2016 IPR025490 RNA-binding protein, HP1423 type Gferi_RS16775 beb64cc1b5d0a18f68086206a8d72a7f 80 Pfam PF01479 S4 domain 1 47 5.2E-12 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS16775 beb64cc1b5d0a18f68086206a8d72a7f 80 SMART SM00363 1 62 1.6E-10 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS16775 beb64cc1b5d0a18f68086206a8d72a7f 80 SUPERFAMILY SSF55174 1 75 1.96E-18 T 11-11-2016 Gferi_RS16775 beb64cc1b5d0a18f68086206a8d72a7f 80 Gene3D G3DSA:3.10.290.10 1 77 1.5E-21 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS20025 ad08e844502e1e91cec6aec04fdf1628 251 SUPERFAMILY SSF52540 1 234 3.06E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20025 ad08e844502e1e91cec6aec04fdf1628 251 Pfam PF00005 ABC transporter 26 171 2.4E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS20025 ad08e844502e1e91cec6aec04fdf1628 251 SMART SM00382 35 220 1.1E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20025 ad08e844502e1e91cec6aec04fdf1628 251 Gene3D G3DSA:3.40.50.300 1 243 1.0E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20025 ad08e844502e1e91cec6aec04fdf1628 251 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS10415 b9f6669af1da7e955ad65b88f3455179 641 Pfam PF05593 RHS Repeat 208 241 5.8E-8 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10415 b9f6669af1da7e955ad65b88f3455179 641 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 230 309 8.5E-22 T 11-11-2016 IPR022385 Rhs repeat-associated core GO:0097264 Gferi_RS10415 b9f6669af1da7e955ad65b88f3455179 641 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 8 39 4.5E-5 T 11-11-2016 IPR006530 YD repeat Gferi_RS10415 b9f6669af1da7e955ad65b88f3455179 641 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 208 240 0.0015 T 11-11-2016 IPR006530 YD repeat Gferi_RS13165 95d09e7e8dc494ccdb15cb46f8c0cd88 329 Gene3D G3DSA:1.10.600.10 21 328 1.3E-93 T 11-11-2016 IPR008949 Isoprenoid synthase domain Gferi_RS13165 95d09e7e8dc494ccdb15cb46f8c0cd88 329 Pfam PF00348 Polyprenyl synthetase 40 267 3.2E-65 T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 Gferi_RS13165 95d09e7e8dc494ccdb15cb46f8c0cd88 329 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 210 222 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 Gferi_RS13165 95d09e7e8dc494ccdb15cb46f8c0cd88 329 SUPERFAMILY SSF48576 21 328 1.73E-83 T 11-11-2016 IPR008949 Isoprenoid synthase domain Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 SMART SM00387 325 437 2.3E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 Gene3D G3DSA:1.10.287.130 203 264 7.1E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 Pfam PF00672 HAMP domain 141 207 1.2E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 Gene3D G3DSA:3.30.450.20 40 131 6.0E-9 T 11-11-2016 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 277 5.2E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 Gene3D G3DSA:3.30.565.10 265 435 7.6E-49 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 SMART SM00388 213 280 2.7E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 SUPERFAMILY SSF158472 161 207 5.49E-9 T 11-11-2016 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 SMART SM00304 160 212 6.5E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 376 3.4E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 434 3.4E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 415 3.4E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 390 3.4E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 326 436 1.1E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 SUPERFAMILY SSF55874 270 435 1.7E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 SUPERFAMILY SSF103190 24 134 2.83E-7 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS26465 e62325798c0966761c4c24d12793ea73 441 SUPERFAMILY SSF47384 197 279 2.16E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21445 500eda0ab98a8244ae2dd34fc30ef9a7 259 Pfam PF01797 Transposase IS200 like 13 123 2.1E-16 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21445 500eda0ab98a8244ae2dd34fc30ef9a7 259 SMART SM01321 9 123 4.4E-36 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21445 500eda0ab98a8244ae2dd34fc30ef9a7 259 Gene3D G3DSA:3.30.70.1290 6 126 1.0E-14 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21445 500eda0ab98a8244ae2dd34fc30ef9a7 259 SUPERFAMILY SSF143422 6 126 4.45E-24 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS09240 4aa896a5a17c86d0089acb2450797a72 53 SUPERFAMILY SSF57802 1 52 2.52E-23 T 11-11-2016 Gferi_RS09240 4aa896a5a17c86d0089acb2450797a72 53 Gene3D G3DSA:2.20.28.10 1 51 2.4E-27 T 11-11-2016 IPR004039 Rubredoxin-type fold Gferi_RS09240 4aa896a5a17c86d0089acb2450797a72 53 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 11-11-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 Gferi_RS09240 4aa896a5a17c86d0089acb2450797a72 53 PIRSF PIRSF000071 1 53 1.2E-27 T 11-11-2016 IPR024922 Rubredoxin GO:0005506|GO:0009055 Gferi_RS09240 4aa896a5a17c86d0089acb2450797a72 53 Pfam PF00301 Rubredoxin 3 49 1.1E-24 T 11-11-2016 IPR024935 Rubredoxin domain GO:0005506 Gferi_RS09240 4aa896a5a17c86d0089acb2450797a72 53 PRINTS PR00163 Rubredoxin signature 33 49 1.0E-11 T 11-11-2016 IPR024935 Rubredoxin domain GO:0005506 Gferi_RS09240 4aa896a5a17c86d0089acb2450797a72 53 PRINTS PR00163 Rubredoxin signature 3 19 1.0E-11 T 11-11-2016 IPR024935 Rubredoxin domain GO:0005506 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 ProSitePatterns PS00482 Dihydroorotase signature 1. 58 66 - T 11-11-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 SUPERFAMILY SSF51556 55 366 5.83E-104 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 Pfam PF01979 Amidohydrolase family 51 417 7.4E-28 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 ProSitePatterns PS00483 Dihydroorotase signature 2. 302 313 - T 11-11-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 Hamap MF_00220_B Dihydroorotase [pyrC]. 2 424 41.353 T 11-11-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 Gene3D G3DSA:2.30.40.10 4 69 1.1E-23 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 Gene3D G3DSA:3.20.20.140 70 406 8.0E-107 T 11-11-2016 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 SUPERFAMILY SSF51338 2 54 1.94E-27 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 SUPERFAMILY SSF51338 366 421 1.94E-27 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS09870 b7475f06dc86e3b532fde0c642d85efa 425 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 21 419 1.9E-128 T 11-11-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 Gferi_RS19390 4f86eecb09843ce9d20fb126c4b19e10 183 SUPERFAMILY SSF55729 11 180 6.92E-34 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19390 4f86eecb09843ce9d20fb126c4b19e10 183 Pfam PF00583 Acetyltransferase (GNAT) family 77 155 2.9E-17 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS19390 4f86eecb09843ce9d20fb126c4b19e10 183 Gene3D G3DSA:3.40.630.30 16 180 4.2E-41 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS26630 9fb4c68c7edd99a6414064b91947884b 93 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 7 84 1.4E-25 T 11-11-2016 IPR003849 Preprotein translocase YajC Gferi_RS26630 9fb4c68c7edd99a6414064b91947884b 93 Pfam PF02699 Preprotein translocase subunit 9 84 3.5E-29 T 11-11-2016 IPR003849 Preprotein translocase YajC Gferi_RS26630 9fb4c68c7edd99a6414064b91947884b 93 SMART SM01323 4 87 1.6E-36 T 11-11-2016 IPR003849 Preprotein translocase YajC Gferi_RS26630 9fb4c68c7edd99a6414064b91947884b 93 PRINTS PR01853 Bacterial YajC preprotein translocase signature 44 62 1.0E-13 T 11-11-2016 IPR003849 Preprotein translocase YajC Gferi_RS26630 9fb4c68c7edd99a6414064b91947884b 93 PRINTS PR01853 Bacterial YajC preprotein translocase signature 6 26 1.0E-13 T 11-11-2016 IPR003849 Preprotein translocase YajC Gferi_RS08170 1bd8cbaee659078fc8f8933994674d2a 221 Gene3D G3DSA:3.40.50.300 2 219 3.1E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08170 1bd8cbaee659078fc8f8933994674d2a 221 SMART SM00382 30 215 4.0E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08170 1bd8cbaee659078fc8f8933994674d2a 221 Pfam PF00005 ABC transporter 22 167 3.6E-26 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS08170 1bd8cbaee659078fc8f8933994674d2a 221 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS08170 1bd8cbaee659078fc8f8933994674d2a 221 SUPERFAMILY SSF52540 5 217 9.75E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 SUPERFAMILY SSF52540 2 228 4.15E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 Pfam PF00005 ABC transporter 18 167 5.7E-26 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 Pfam PF00005 ABC transporter 267 421 2.6E-15 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 Gene3D G3DSA:3.40.50.300 254 488 2.6E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 Gene3D G3DSA:3.40.50.300 2 231 3.8E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 ProSitePatterns PS00211 ABC transporters family signature. 393 407 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 SUPERFAMILY SSF52540 257 482 2.2E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 SMART SM00382 275 471 20.0 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25255 58e11badf12bca38785b0c3e666079f6 497 SMART SM00382 27 217 2.7E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22650 f329382d0bfc31f3d8aa9dc8677a462e 323 Pfam PF02780 Transketolase, C-terminal domain 188 309 2.3E-27 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS22650 f329382d0bfc31f3d8aa9dc8677a462e 323 SUPERFAMILY SSF52518 5 179 8.57E-44 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS22650 f329382d0bfc31f3d8aa9dc8677a462e 323 SUPERFAMILY SSF52922 184 318 6.02E-32 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS22650 f329382d0bfc31f3d8aa9dc8677a462e 323 Gene3D G3DSA:3.40.50.920 188 316 9.6E-36 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS22650 f329382d0bfc31f3d8aa9dc8677a462e 323 Gene3D G3DSA:3.40.50.970 7 187 2.5E-45 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS22650 f329382d0bfc31f3d8aa9dc8677a462e 323 Pfam PF02779 Transketolase, pyrimidine binding domain 13 175 4.6E-26 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS22650 f329382d0bfc31f3d8aa9dc8677a462e 323 SMART SM00861 12 177 4.8E-37 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 SUPERFAMILY SSF46689 57 110 4.03E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 5.6E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 5.6E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 Pfam PF12833 Helix-turn-helix domain 27 105 3.6E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 SMART SM00342 21 104 5.2E-24 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 Pfam PF14526 Integron-associated effector binding protein 173 296 2.6E-11 T 11-11-2016 IPR029441 Integron-associated effector binding protein Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 Gene3D G3DSA:3.20.80.10 173 296 3.3E-8 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 SMART SM00871 138 299 1.9E-4 T 11-11-2016 IPR010499 Bacterial transcription activator, effector binding Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 SUPERFAMILY SSF46689 5 54 5.38E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 Gene3D G3DSA:1.10.10.60 2 57 5.4E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 SUPERFAMILY SSF55136 172 296 6.45E-11 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS21785 52f316e287705a6d877e9845fd8eb3c8 302 Gene3D G3DSA:1.10.10.60 58 118 4.3E-20 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19350 48b7c9f7c0ed424055bac6bae460607e 188 Gene3D G3DSA:3.40.630.30 6 183 4.8E-46 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19350 48b7c9f7c0ed424055bac6bae460607e 188 Pfam PF13302 Acetyltransferase (GNAT) domain 11 158 1.8E-20 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS19350 48b7c9f7c0ed424055bac6bae460607e 188 SUPERFAMILY SSF55729 5 183 9.4E-39 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS24975 b085d5c1d6b7a1144a8011294d3545f7 129 Pfam PF08818 Domain of unknown function (DU1801) 23 113 2.9E-17 T 11-11-2016 IPR014922 Domain of unknown function DUF1801 Gferi_RS24975 b085d5c1d6b7a1144a8011294d3545f7 129 SUPERFAMILY SSF159888 10 122 6.02E-37 T 11-11-2016 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 2.1E-14 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 Pfam PF03143 Elongation factor Tu C-terminal domain 301 395 2.7E-33 T 11-11-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 52 67 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 SUPERFAMILY SSF50447 207 304 4.78E-31 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.0E-58 T 11-11-2016 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 Pfam PF03144 Elongation factor Tu domain 2 227 296 4.7E-17 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 397 3.2E-227 T 11-11-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 SUPERFAMILY SSF50465 301 396 2.53E-36 T 11-11-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 Gene3D G3DSA:2.40.30.10 214 301 3.8E-38 T 11-11-2016 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 60.799 T 11-11-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 Gene3D G3DSA:3.40.50.300 5 213 4.2E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 132 141 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 79 89 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 59 67 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 95 106 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 Gene3D G3DSA:2.40.30.10 303 395 1.7E-46 T 11-11-2016 Gferi_RS17305 184d3dc7c3b2fb86e42e884532ab64ec 397 SUPERFAMILY SSF52540 6 221 1.87E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 2.1E-14 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 Pfam PF03143 Elongation factor Tu C-terminal domain 301 395 2.7E-33 T 11-11-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 52 67 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 SUPERFAMILY SSF50447 207 304 4.78E-31 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.0E-58 T 11-11-2016 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 Pfam PF03144 Elongation factor Tu domain 2 227 296 4.7E-17 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 397 3.2E-227 T 11-11-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 SUPERFAMILY SSF50465 301 396 2.53E-36 T 11-11-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 Gene3D G3DSA:2.40.30.10 214 301 3.8E-38 T 11-11-2016 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 60.799 T 11-11-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 Gene3D G3DSA:3.40.50.300 5 213 4.2E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 132 141 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 79 89 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 59 67 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 PRINTS PR00315 GTP-binding elongation factor signature 95 106 3.1E-25 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 Gene3D G3DSA:2.40.30.10 303 395 1.7E-46 T 11-11-2016 Gferi_RS17385 184d3dc7c3b2fb86e42e884532ab64ec 397 SUPERFAMILY SSF52540 6 221 1.87E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Gene3D G3DSA:3.30.1340.10 3 88 8.1E-13 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 SMART SM00382 385 528 4.6E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 SUPERFAMILY SSF46689 578 677 5.38E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Gene3D G3DSA:3.30.450.20 115 222 8.3E-14 T 11-11-2016 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Pfam PF00158 Sigma-54 interaction domain 365 531 2.7E-71 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Gene3D G3DSA:1.10.10.60 636 677 4.9E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 578 587 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Gene3D G3DSA:1.10.8.60 538 611 8.7E-26 T 11-11-2016 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 SUPERFAMILY SSF55785 209 324 1.92E-16 T 11-11-2016 IPR000014 PAS domain Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 SUPERFAMILY SSF55785 114 207 1.12E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Pfam PF00989 PAS fold 229 310 4.6E-11 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Pfam PF00989 PAS fold 116 210 1.0E-9 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 SUPERFAMILY SSF52540 365 609 2.32E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Pfam PF00381 PTS HPr component phosphorylation site 4 88 5.0E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Gene3D G3DSA:3.30.450.20 226 329 8.3E-16 T 11-11-2016 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 Gene3D G3DSA:3.40.50.300 362 537 2.2E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 SMART SM00091 228 294 2.6E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 SMART SM00091 111 177 2.3E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 227 337 8.8E-15 T 11-11-2016 IPR000014 PAS domain Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 116 219 6.9E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 451 466 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 SUPERFAMILY SSF55594 4 89 9.42E-10 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18030 6eaf37cf2848519eaa36a30200eb2311 678 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 389 402 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 Pfam PF16658 Class II release factor RF3, C-terminal domain 386 514 1.8E-47 T 11-11-2016 IPR032090 Peptide chain release factor 3, C-terminal Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 Gene3D G3DSA:2.40.30.10 290 388 8.7E-24 T 11-11-2016 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 SUPERFAMILY SSF50447 259 386 2.1E-26 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 525 1.7E-209 T 11-11-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 SUPERFAMILY SSF54980 391 465 3.6E-15 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 146 4.1E-23 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 527 49.339 T 11-11-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 Gene3D G3DSA:3.40.50.300 5 278 1.1E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 Gene3D G3DSA:3.30.70.870 394 465 6.2E-12 T 11-11-2016 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 PRINTS PR00315 GTP-binding elongation factor signature 135 144 2.4E-11 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 PRINTS PR00315 GTP-binding elongation factor signature 63 71 2.4E-11 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 PRINTS PR00315 GTP-binding elongation factor signature 99 110 2.4E-11 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 PRINTS PR00315 GTP-binding elongation factor signature 83 93 2.4E-11 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 PRINTS PR00315 GTP-binding elongation factor signature 13 26 2.4E-11 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 Pfam PF03144 Elongation factor Tu domain 2 312 378 1.1E-7 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 Pfam PF00009 Elongation factor Tu GTP binding domain 11 272 1.0E-51 T 11-11-2016 Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 SUPERFAMILY SSF52540 8 273 7.42E-87 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22675 5d7628aacd505d4e7bc2c183cb42329f 530 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 Pfam PF07724 AAA domain (Cdc48 subfamily) 107 304 3.1E-50 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 SUPERFAMILY SSF57716 10 45 1.15E-11 T 11-11-2016 Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 311 389 1.8E-17 T 11-11-2016 IPR019489 Clp ATPase, C-terminal Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 4 405 1.5E-208 T 11-11-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 SMART SM00382 107 259 2.1E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 Gene3D G3DSA:3.40.50.300 61 249 3.8E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 Gene3D G3DSA:3.40.50.300 288 306 3.8E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 Gene3D G3DSA:1.10.8.60 310 411 1.6E-37 T 11-11-2016 Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 SMART SM01086 311 407 5.0E-33 T 11-11-2016 IPR019489 Clp ATPase, C-terminal Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 SMART SM00994 9 48 2.7E-24 T 11-11-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 Pfam PF06689 ClpX C4-type zinc finger 10 47 3.1E-20 T 11-11-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 SUPERFAMILY SSF52540 59 398 8.37E-80 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09270 e0696599e4505a0f7279282c8ad849c7 424 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 409 53.874 T 11-11-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Gferi_RS05675 5b74d11aed8aed6f2baf5cbe393189b1 233 Gene3D G3DSA:1.10.10.10 162 204 4.4E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05675 5b74d11aed8aed6f2baf5cbe393189b1 233 Pfam PF00072 Response regulator receiver domain 6 117 2.7E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05675 5b74d11aed8aed6f2baf5cbe393189b1 233 Pfam PF08279 HTH domain 163 212 8.8E-6 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS05675 5b74d11aed8aed6f2baf5cbe393189b1 233 SMART SM00448 4 117 6.0E-33 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05675 5b74d11aed8aed6f2baf5cbe393189b1 233 SUPERFAMILY SSF46785 162 207 4.02E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05675 5b74d11aed8aed6f2baf5cbe393189b1 233 Gene3D G3DSA:3.40.50.2300 2 130 1.5E-35 T 11-11-2016 Gferi_RS05675 5b74d11aed8aed6f2baf5cbe393189b1 233 SUPERFAMILY SSF52172 1 161 1.85E-37 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS05675 5b74d11aed8aed6f2baf5cbe393189b1 233 PIRSF PIRSF006171 2 227 3.2E-83 T 11-11-2016 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 Gferi_RS05075 e19d83c715d037bfd74182e565d13d8c 303 SUPERFAMILY SSF55729 147 290 5.4E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS05075 e19d83c715d037bfd74182e565d13d8c 303 SUPERFAMILY SSF46785 12 144 3.6E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05075 e19d83c715d037bfd74182e565d13d8c 303 Gene3D G3DSA:3.40.630.30 146 286 1.7E-29 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS05075 e19d83c715d037bfd74182e565d13d8c 303 Pfam PF01047 MarR family 34 90 2.6E-11 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS05075 e19d83c715d037bfd74182e565d13d8c 303 SMART SM00347 26 126 1.5E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS05075 e19d83c715d037bfd74182e565d13d8c 303 Pfam PF13673 Acetyltransferase (GNAT) domain 199 286 4.3E-13 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS05075 e19d83c715d037bfd74182e565d13d8c 303 Gene3D G3DSA:1.10.10.10 13 142 4.6E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS27130 9138dd5a8839e7342b38eebd7a8bd03c 296 SUPERFAMILY SSF103481 35 135 9.94E-15 T 11-11-2016 Gferi_RS27130 9138dd5a8839e7342b38eebd7a8bd03c 296 SUPERFAMILY SSF103481 183 281 2.48E-14 T 11-11-2016 Gferi_RS27130 9138dd5a8839e7342b38eebd7a8bd03c 296 Pfam PF00892 EamA-like transporter family 2 134 2.8E-17 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS27130 9138dd5a8839e7342b38eebd7a8bd03c 296 Pfam PF00892 EamA-like transporter family 149 281 7.5E-23 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS10340 4ec88e35e22f6f276b57572480ab34fd 253 SUPERFAMILY SSF143422 1 129 1.26E-26 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10340 4ec88e35e22f6f276b57572480ab34fd 253 Pfam PF01797 Transposase IS200 like 13 123 2.5E-16 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10340 4ec88e35e22f6f276b57572480ab34fd 253 SMART SM01321 9 123 1.9E-39 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10340 4ec88e35e22f6f276b57572480ab34fd 253 Gene3D G3DSA:3.30.70.1290 4 126 3.3E-16 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 Pfam PF13237 4Fe-4S dicluster domain 48 91 5.9E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 107 118 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 Pfam PF00037 4Fe-4S binding domain 101 122 1.1E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 80 91 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 SUPERFAMILY SSF54862 7 128 8.38E-27 T 11-11-2016 Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 Gene3D G3DSA:3.30.70.20 88 129 1.2E-12 T 11-11-2016 Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 Gene3D G3DSA:3.30.70.20 7 59 2.8E-9 T 11-11-2016 Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 Gene3D G3DSA:3.30.70.20 60 87 1.6E-12 T 11-11-2016 Gferi_RS00555 47e44590b09e924cc790b4c814432a18 145 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 50 61 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Pfam PF14520 Helix-hairpin-helix domain 89 138 1.6E-6 T 11-11-2016 Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 SMART SM00382 333 481 3.9E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 TIGRFAM TIGR01448 recD_rel: helicase, RecD/TraA family 5 727 1.2E-208 T 11-11-2016 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 SUPERFAMILY SSF47781 81 158 2.78E-11 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 SUPERFAMILY SSF52540 317 707 2.38E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Gene3D G3DSA:1.10.150.20 89 149 1.7E-7 T 11-11-2016 Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Hamap MF_01488 ATP-dependent RecD-like DNA helicase [recD2]. 2 737 28.249 T 11-11-2016 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 SMART SM00278 117 136 3.6 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 SMART SM00278 181 200 2000.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 SMART SM00278 82 103 180.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Pfam PF14490 Helix-hairpin-helix containing domain 139 229 9.0E-32 T 11-11-2016 IPR029493 RecD helicase-like helix-hairpin-helix domain Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Pfam PF13538 UvrD-like helicase C-terminal domain 657 704 3.4E-18 T 11-11-2016 IPR027785 UvrD-like helicase C-terminal domain Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Pfam PF13604 AAA domain 319 504 8.5E-46 T 11-11-2016 Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Gene3D G3DSA:3.40.50.300 150 159 1.2E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Gene3D G3DSA:3.40.50.300 648 707 1.2E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10810 772eca71312f0ad6c7f6beec6cae3dcf 741 Gene3D G3DSA:3.40.50.300 282 501 4.1E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01900 19ce5e9f1982c96b8e1fb4d49b5be771 89 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 4 75 7.4E-30 T 11-11-2016 IPR014238 Sporulation protein YlmC/YmxH Gferi_RS01900 19ce5e9f1982c96b8e1fb4d49b5be771 89 Gene3D G3DSA:2.30.30.240 1 77 2.2E-26 T 11-11-2016 Gferi_RS01900 19ce5e9f1982c96b8e1fb4d49b5be771 89 SUPERFAMILY SSF50346 1 74 2.62E-14 T 11-11-2016 IPR011033 PRC-barrel-like Gferi_RS01900 19ce5e9f1982c96b8e1fb4d49b5be771 89 Pfam PF05239 PRC-barrel domain 2 75 1.6E-12 T 11-11-2016 IPR027275 PRC-barrel domain Gferi_RS21805 a8385fdf97529a8dc4745361c5a78f0a 57 Pfam PF02599 Global regulator protein family 1 50 9.7E-20 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Gferi_RS21805 a8385fdf97529a8dc4745361c5a78f0a 57 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 47 1.0E-7 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Gferi_RS21805 a8385fdf97529a8dc4745361c5a78f0a 57 SUPERFAMILY SSF117130 1 50 6.28E-15 T 11-11-2016 Gferi_RS17705 960032637d0de8ff061d562e18ece962 212 SUPERFAMILY SSF56784 6 211 2.0E-29 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS17705 960032637d0de8ff061d562e18ece962 212 Gene3D G3DSA:3.40.50.1000 74 93 5.7E-4 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS17705 960032637d0de8ff061d562e18ece962 212 Gene3D G3DSA:3.40.50.1000 6 23 5.7E-4 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS17705 960032637d0de8ff061d562e18ece962 212 Gene3D G3DSA:3.40.50.1000 94 202 2.3E-23 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS17705 960032637d0de8ff061d562e18ece962 212 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 7 177 1.1E-20 T 11-11-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 Gferi_RS17705 960032637d0de8ff061d562e18ece962 212 Pfam PF12710 haloacid dehalogenase-like hydrolase 9 176 9.2E-19 T 11-11-2016 Gferi_RS14330 3ad72ca5004e022f9f06615922a8dfbc 233 SMART SM00873 63 216 2.7E-6 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS14330 3ad72ca5004e022f9f06615922a8dfbc 233 Pfam PF03483 B3/4 domain 68 194 1.0E-19 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS14330 3ad72ca5004e022f9f06615922a8dfbc 233 SUPERFAMILY SSF56037 52 227 4.97E-25 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS14330 3ad72ca5004e022f9f06615922a8dfbc 233 Gene3D G3DSA:3.50.40.10 72 193 5.3E-14 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS24865 49359c275c12a8610071354252f51462 627 Gene3D G3DSA:3.40.50.2030 410 627 1.0E-75 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS24865 49359c275c12a8610071354252f51462 627 SUPERFAMILY SSF56821 23 627 1.96E-149 T 11-11-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 Gferi_RS24865 49359c275c12a8610071354252f51462 627 TIGRFAM TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit 12 627 4.8E-240 T 11-11-2016 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS24865 49359c275c12a8610071354252f51462 627 Gene3D G3DSA:3.40.50.2030 235 405 1.6E-52 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS24865 49359c275c12a8610071354252f51462 627 Gene3D G3DSA:1.20.1270.30 62 232 3.7E-58 T 11-11-2016 IPR016101 CO dehydrogenase, alpha-bundle GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS24865 49359c275c12a8610071354252f51462 627 Pfam PF03063 Prismane/CO dehydrogenase family 47 607 2.5E-134 T 11-11-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS24865 49359c275c12a8610071354252f51462 627 PIRSF PIRSF005023 1 627 1.4E-224 T 11-11-2016 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS18000 a72fe775d56946f1e88baeebc066aea0 211 Pfam PF01467 Cytidylyltransferase-like 6 172 2.0E-25 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Gferi_RS18000 a72fe775d56946f1e88baeebc066aea0 211 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 2 199 26.928 T 11-11-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 Gferi_RS18000 a72fe775d56946f1e88baeebc066aea0 211 Gene3D G3DSA:3.40.50.620 2 203 4.1E-57 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS18000 a72fe775d56946f1e88baeebc066aea0 211 SUPERFAMILY SSF52374 2 199 1.34E-43 T 11-11-2016 Gferi_RS18000 a72fe775d56946f1e88baeebc066aea0 211 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 65 4.4E-10 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Gferi_RS18000 a72fe775d56946f1e88baeebc066aea0 211 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 6 198 1.8E-45 T 11-11-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 Gferi_RS24235 f56167bb248c8fcf3b586581c35cb037 123 Pfam PF01903 CbiX 10 115 4.6E-27 T 11-11-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 Gferi_RS24235 f56167bb248c8fcf3b586581c35cb037 123 Gene3D G3DSA:3.40.50.1400 1 122 6.6E-31 T 11-11-2016 Gferi_RS24235 f56167bb248c8fcf3b586581c35cb037 123 SUPERFAMILY SSF53800 1 120 1.44E-27 T 11-11-2016 Gferi_RS27220 a7c2550a1223130339c46946accf8e96 313 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 5 307 30.546 T 11-11-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Gferi_RS27220 a7c2550a1223130339c46946accf8e96 313 SUPERFAMILY SSF52540 129 263 1.68E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27220 a7c2550a1223130339c46946accf8e96 313 SUPERFAMILY SSF52540 1 41 1.68E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27220 a7c2550a1223130339c46946accf8e96 313 Gene3D G3DSA:3.40.50.300 2 171 4.6E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27220 a7c2550a1223130339c46946accf8e96 313 Gene3D G3DSA:1.10.287.890 200 280 7.8E-31 T 11-11-2016 Gferi_RS27220 a7c2550a1223130339c46946accf8e96 313 SUPERFAMILY SSF52540 5 151 7.77E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27220 a7c2550a1223130339c46946accf8e96 313 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 6 289 1.2E-100 T 11-11-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Gferi_RS27220 a7c2550a1223130339c46946accf8e96 313 Pfam PF01715 IPP transferase 38 283 3.3E-81 T 11-11-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Gferi_RS01995 869f31b87f286a38034ea3d9c7386037 143 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 138 5.0E-57 T 11-11-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Gferi_RS01995 869f31b87f286a38034ea3d9c7386037 143 Pfam PF02381 MraZ protein, putative antitoxin-like 1 70 4.5E-22 T 11-11-2016 IPR020603 MraZ domain Gferi_RS01995 869f31b87f286a38034ea3d9c7386037 143 Pfam PF02381 MraZ protein, putative antitoxin-like 72 139 8.1E-24 T 11-11-2016 IPR020603 MraZ domain Gferi_RS01995 869f31b87f286a38034ea3d9c7386037 143 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 141 8.6E-51 T 11-11-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Gferi_RS01995 869f31b87f286a38034ea3d9c7386037 143 SUPERFAMILY SSF89447 2 136 1.05E-52 T 11-11-2016 Gferi_RS01995 869f31b87f286a38034ea3d9c7386037 143 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 143 56.937 T 11-11-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Gferi_RS11425 fd8e5ced6962a646c90f7c2d50ea7c1a 251 SUPERFAMILY SSF55383 21 87 3.01E-7 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11425 fd8e5ced6962a646c90f7c2d50ea7c1a 251 Pfam PF07833 Copper amine oxidase N-terminal domain 45 92 2.8E-8 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11425 fd8e5ced6962a646c90f7c2d50ea7c1a 251 Pfam PF07833 Copper amine oxidase N-terminal domain 63 152 2.5E-8 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11425 fd8e5ced6962a646c90f7c2d50ea7c1a 251 Gene3D G3DSA:3.30.457.10 67 94 4.5E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS01875 06372fa109a8fa1536c08922cf3004ca 250 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 4 250 1.4E-127 T 11-11-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 Gferi_RS01875 06372fa109a8fa1536c08922cf3004ca 250 SUPERFAMILY SSF52540 4 237 1.74E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01875 06372fa109a8fa1536c08922cf3004ca 250 Gene3D G3DSA:3.40.50.300 3 244 7.4E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01875 06372fa109a8fa1536c08922cf3004ca 250 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS01875 06372fa109a8fa1536c08922cf3004ca 250 Pfam PF00005 ABC transporter 21 175 1.8E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS01875 06372fa109a8fa1536c08922cf3004ca 250 SMART SM00382 28 243 4.6E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Gene3D G3DSA:1.10.1790.10 300 401 1.6E-18 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Gene3D G3DSA:1.10.1790.10 195 292 6.5E-16 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 SUPERFAMILY SSF55804 550 695 2.75E-21 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Pfam PF00874 PRD domain 202 289 2.8E-14 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Pfam PF00874 PRD domain 308 397 8.8E-17 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 SUPERFAMILY SSF46785 2 45 5.45E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Gene3D G3DSA:3.40.50.270 408 488 9.2E-8 T 11-11-2016 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 554 695 3.3E-15 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 SUPERFAMILY SSF63520 182 292 2.62E-16 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Pfam PF08279 HTH domain 5 57 2.6E-8 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Gene3D G3DSA:3.40.930.10 548 697 1.4E-31 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 SUPERFAMILY SSF52794 409 488 5.75E-10 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Gene3D G3DSA:1.10.10.10 3 59 2.9E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 Pfam PF05043 Mga helix-turn-helix domain 87 160 1.1E-4 T 11-11-2016 IPR007737 Mga helix-turn-helix domain Gferi_RS22700 470d1a344350be3ba026d03fbbb9cf32 701 SUPERFAMILY SSF63520 300 401 3.92E-18 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS07150 3190d950aa016edea9964f1bb7a6591c 230 Gene3D G3DSA:1.10.10.10 128 228 8.7E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07150 3190d950aa016edea9964f1bb7a6591c 230 SMART SM00862 151 226 5.7E-24 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07150 3190d950aa016edea9964f1bb7a6591c 230 SMART SM00448 5 115 2.1E-45 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07150 3190d950aa016edea9964f1bb7a6591c 230 Gene3D G3DSA:3.40.50.2300 6 127 1.2E-42 T 11-11-2016 Gferi_RS07150 3190d950aa016edea9964f1bb7a6591c 230 SUPERFAMILY SSF52172 6 129 9.11E-43 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS07150 3190d950aa016edea9964f1bb7a6591c 230 SUPERFAMILY SSF46894 127 227 1.86E-29 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS07150 3190d950aa016edea9964f1bb7a6591c 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 5.6E-24 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07150 3190d950aa016edea9964f1bb7a6591c 230 Pfam PF00072 Response regulator receiver domain 7 115 2.4E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS02305 f28e5e2874c21ecffc5ab6fc17706205 225 Gene3D G3DSA:3.60.10.10 1 224 1.0E-25 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase Gferi_RS02305 f28e5e2874c21ecffc5ab6fc17706205 225 SUPERFAMILY SSF56219 1 225 3.66E-43 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase Gferi_RS02305 f28e5e2874c21ecffc5ab6fc17706205 225 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 1 216 1.3E-27 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase Gferi_RS26000 b1a0a09cd305459e5acfa42093470b79 306 SUPERFAMILY SSF161111 7 208 6.15E-58 T 11-11-2016 Gferi_RS26000 b1a0a09cd305459e5acfa42093470b79 306 SUPERFAMILY SSF160240 211 290 2.09E-19 T 11-11-2016 Gferi_RS26000 b1a0a09cd305459e5acfa42093470b79 306 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 290 6.0E-79 T 11-11-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Gferi_RS26000 b1a0a09cd305459e5acfa42093470b79 306 Gene3D G3DSA:1.20.1510.10 11 207 2.2E-49 T 11-11-2016 IPR027469 Cation efflux protein transmembrane domain Gferi_RS26000 b1a0a09cd305459e5acfa42093470b79 306 Gene3D G3DSA:3.30.70.1350 208 290 9.1E-23 T 11-11-2016 IPR027470 Cation efflux protein, cytoplasmic domain Gferi_RS26000 b1a0a09cd305459e5acfa42093470b79 306 Pfam PF01545 Cation efflux family 15 207 4.1E-47 T 11-11-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Gferi_RS26000 b1a0a09cd305459e5acfa42093470b79 306 Pfam PF16916 Dimerisation domain of Zinc Transporter 213 289 3.2E-23 T 11-11-2016 IPR027470 Cation efflux protein, cytoplasmic domain Gferi_RS15770 cd8847518dd539dfc20fc754e07837de 442 Gene3D G3DSA:3.40.50.2030 270 439 1.4E-62 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS15770 cd8847518dd539dfc20fc754e07837de 442 Gene3D G3DSA:1.20.1270.20 40 123 1.8E-33 T 11-11-2016 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS15770 cd8847518dd539dfc20fc754e07837de 442 Pfam PF03063 Prismane/CO dehydrogenase family 14 89 3.6E-14 T 11-11-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS15770 cd8847518dd539dfc20fc754e07837de 442 Pfam PF03063 Prismane/CO dehydrogenase family 64 437 1.1E-109 T 11-11-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS15770 cd8847518dd539dfc20fc754e07837de 442 Gene3D G3DSA:3.40.50.2030 126 269 1.8E-62 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS15770 cd8847518dd539dfc20fc754e07837de 442 SUPERFAMILY SSF56821 13 439 1.44E-149 T 11-11-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 Gferi_RS15770 cd8847518dd539dfc20fc754e07837de 442 Hamap MF_00069 Hydroxylamine reductase [hcp]. 14 442 16.917 T 11-11-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS15770 cd8847518dd539dfc20fc754e07837de 442 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 36 441 2.3E-174 T 11-11-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS10510 3dbadad36ad016e6af2c7dfbeedfb115 56 SUPERFAMILY SSF54862 1 53 6.12E-19 T 11-11-2016 Gferi_RS10510 3dbadad36ad016e6af2c7dfbeedfb115 56 Pfam PF12838 4Fe-4S dicluster domain 8 52 1.9E-10 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS10510 3dbadad36ad016e6af2c7dfbeedfb115 56 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS10510 3dbadad36ad016e6af2c7dfbeedfb115 56 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 38 49 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS10510 3dbadad36ad016e6af2c7dfbeedfb115 56 Gene3D G3DSA:3.30.70.20 3 53 1.7E-18 T 11-11-2016 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 410 425 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Gene3D G3DSA:3.40.50.300 319 495 6.8E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 192 304 2.0E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Pfam PF00158 Sigma-54 interaction domain 323 490 3.0E-64 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Pfam PF06506 Propionate catabolism activator 29 191 8.0E-41 T 11-11-2016 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Pfam PF00989 PAS fold 197 247 1.5E-5 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Pfam PF02954 Bacterial regulatory protein, Fis family 588 627 1.3E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Gene3D G3DSA:3.40.50.2300 4 77 8.5E-15 T 11-11-2016 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Gene3D G3DSA:3.40.50.2300 169 194 8.5E-15 T 11-11-2016 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 SMART SM00382 343 498 3.1E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 SUPERFAMILY SSF55785 187 296 5.33E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 SUPERFAMILY SSF52540 322 566 1.08E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 SMART SM00091 196 262 6.8E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Gene3D G3DSA:1.10.10.60 587 625 8.3E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 SUPERFAMILY SSF46689 538 625 7.89E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Gene3D G3DSA:1.10.8.60 497 565 8.9E-22 T 11-11-2016 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Gene3D G3DSA:3.30.450.20 195 296 6.8E-11 T 11-11-2016 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 Gene3D G3DSA:3.40.50.10660 79 167 5.4E-14 T 11-11-2016 Gferi_RS08345 38a19e7417b5a38816983729e7126c85 629 SUPERFAMILY SSF159800 4 187 2.09E-42 T 11-11-2016 Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 SUPERFAMILY SSF55031 186 293 6.67E-29 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 SUPERFAMILY SSF53187 300 389 5.39E-86 T 11-11-2016 Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 SUPERFAMILY SSF53187 5 199 5.39E-86 T 11-11-2016 Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 PIRSF PIRSF005962 2 392 1.6E-130 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 Pfam PF07687 Peptidase dimerisation domain 187 284 4.3E-7 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 Gene3D G3DSA:3.30.70.360 183 299 1.3E-37 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 Gene3D G3DSA:3.40.630.10 5 180 6.2E-99 T 11-11-2016 Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 Gene3D G3DSA:3.40.630.10 300 390 6.2E-99 T 11-11-2016 Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 Pfam PF01546 Peptidase family M20/M25/M40 73 384 1.0E-36 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS09960 f20b6dffb4e8d36a98c8951808b14b69 398 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 377 5.0E-118 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS10270 073c87d2e0c87dde196c4b5c8fe5b3bb 200 SUPERFAMILY SSF109604 12 139 9.18E-14 T 11-11-2016 Gferi_RS10270 073c87d2e0c87dde196c4b5c8fe5b3bb 200 SMART SM00471 20 151 2.2E-6 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS10270 073c87d2e0c87dde196c4b5c8fe5b3bb 200 Pfam PF01966 HD domain 25 78 1.3E-6 T 11-11-2016 IPR006674 HD domain Gferi_RS10270 073c87d2e0c87dde196c4b5c8fe5b3bb 200 Gene3D G3DSA:1.10.3210.10 11 172 1.8E-18 T 11-11-2016 IPR006674 HD domain Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Pfam PF02743 Cache domain 38 270 2.2E-22 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SUPERFAMILY SSF47384 498 572 8.44E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SUPERFAMILY SSF103190 68 182 1.55E-7 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SUPERFAMILY SSF158472 310 359 4.05E-5 T 11-11-2016 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SMART SM00304 309 363 1.9E-4 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Gene3D G3DSA:3.30.450.20 378 507 7.6E-19 T 11-11-2016 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Gene3D G3DSA:3.30.450.20 71 160 6.6E-8 T 11-11-2016 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SMART SM00091 377 444 5.2E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 615 720 1.1E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Gene3D G3DSA:3.30.565.10 577 720 5.4E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SMART SM00387 614 724 6.9E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Pfam PF00672 HAMP domain 292 359 1.0E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 673 683 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 655 669 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 702 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 377 498 2.4E-17 T 11-11-2016 IPR000014 PAS domain Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SUPERFAMILY SSF55785 389 500 4.36E-19 T 11-11-2016 IPR000014 PAS domain Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SMART SM00086 449 491 5.2E-4 T 11-11-2016 IPR001610 PAC motif Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Pfam PF00989 PAS fold 379 487 2.9E-14 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Gene3D G3DSA:1.10.287.130 508 568 1.6E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Pfam PF00512 His Kinase A (phospho-acceptor) domain 508 568 1.8E-6 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 Gene3D G3DSA:3.30.450.20 161 286 3.9E-14 T 11-11-2016 Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SUPERFAMILY SSF55874 563 720 1.31E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25875 00430a905911afc9e1bdd6d000caca53 732 SMART SM00388 506 572 7.6E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS25420 69c7490784bf7199c4b75d8b76380875 188 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 2 185 42.12 T 11-11-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 Gferi_RS25420 69c7490784bf7199c4b75d8b76380875 188 SUPERFAMILY SSF55620 2 185 4.45E-79 T 11-11-2016 Gferi_RS25420 69c7490784bf7199c4b75d8b76380875 188 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 6 184 1.1E-75 T 11-11-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 Gferi_RS25420 69c7490784bf7199c4b75d8b76380875 188 Gene3D G3DSA:3.30.1130.10 57 185 5.4E-60 T 11-11-2016 Gferi_RS25420 69c7490784bf7199c4b75d8b76380875 188 Pfam PF01227 GTP cyclohydrolase I 6 184 1.5E-77 T 11-11-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 Gferi_RS25420 69c7490784bf7199c4b75d8b76380875 188 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 112 122 - T 11-11-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 Gferi_RS25420 69c7490784bf7199c4b75d8b76380875 188 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 63 79 - T 11-11-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 Gferi_RS25420 69c7490784bf7199c4b75d8b76380875 188 Gene3D G3DSA:1.10.286.10 1 53 8.0E-26 T 11-11-2016 Gferi_RS18905 eb78022cdfa0111b4c357b49cba0ae9b 545 Pfam PF13175 AAA ATPase domain 1 330 7.7E-20 T 11-11-2016 Gferi_RS18905 eb78022cdfa0111b4c357b49cba0ae9b 545 Gene3D G3DSA:3.40.50.300 1 68 1.0E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18905 eb78022cdfa0111b4c357b49cba0ae9b 545 Gene3D G3DSA:3.40.50.300 106 346 1.0E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18905 eb78022cdfa0111b4c357b49cba0ae9b 545 SUPERFAMILY SSF52540 1 136 8.22E-27 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18905 eb78022cdfa0111b4c357b49cba0ae9b 545 SUPERFAMILY SSF52540 179 349 8.22E-27 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08135 31ee8b1465b75ba5dbbd86afadc2a8a5 540 Gene3D G3DSA:3.40.190.10 162 298 1.9E-33 T 11-11-2016 Gferi_RS08135 31ee8b1465b75ba5dbbd86afadc2a8a5 540 Gene3D G3DSA:3.10.105.10 299 509 1.8E-45 T 11-11-2016 Gferi_RS08135 31ee8b1465b75ba5dbbd86afadc2a8a5 540 TIGRFAM TIGR02294 nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein 42 537 2.9E-178 T 11-11-2016 IPR011980 Periplasmic nickel-binding protein GO:0015675|GO:0016151|GO:0020037 Gferi_RS08135 31ee8b1465b75ba5dbbd86afadc2a8a5 540 PIRSF PIRSF002741 4 540 7.3E-92 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS08135 31ee8b1465b75ba5dbbd86afadc2a8a5 540 Gene3D G3DSA:3.90.76.10 83 161 2.3E-23 T 11-11-2016 Gferi_RS08135 31ee8b1465b75ba5dbbd86afadc2a8a5 540 SUPERFAMILY SSF53850 45 539 4.34E-108 T 11-11-2016 Gferi_RS08135 31ee8b1465b75ba5dbbd86afadc2a8a5 540 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 86 448 4.9E-82 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 Gene3D G3DSA:1.10.10.10 196 251 3.3E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 Pfam PF04542 Sigma-70 region 2 44 101 1.1E-13 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 Pfam PF04539 Sigma-70 region 3 111 175 2.0E-10 T 11-11-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 Gene3D G3DSA:1.10.10.10 100 155 5.8E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 SUPERFAMILY SSF88659 169 252 1.07E-13 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 26 251 3.1E-77 T 11-11-2016 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 SUPERFAMILY SSF88659 105 182 1.35E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 Pfam PF04545 Sigma-70, region 4 200 249 1.0E-10 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 251 8.0E-27 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 SUPERFAMILY SSF88946 9 101 2.2E-27 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS13210 8a71583f1a5f0e0c0ca6ed62814ee2c4 257 Gene3D G3DSA:1.10.601.10 8 99 5.4E-21 T 11-11-2016 Gferi_RS24625 918799a63c9f3093e494927371c99611 297 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 275 4.4E-15 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Gferi_RS24625 918799a63c9f3093e494927371c99611 297 Gene3D G3DSA:3.30.420.40 2 72 9.4E-7 T 11-11-2016 Gferi_RS24625 918799a63c9f3093e494927371c99611 297 SUPERFAMILY SSF53067 112 284 1.78E-35 T 11-11-2016 Gferi_RS24625 918799a63c9f3093e494927371c99611 297 SUPERFAMILY SSF53067 1 105 1.3E-14 T 11-11-2016 Gferi_RS06945 86f1867747c390c7813774dcfa55e5f2 354 Gene3D G3DSA:3.90.1210.10 293 350 8.3E-24 T 11-11-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal Reactome: R-HSA-4085001 Gferi_RS06945 86f1867747c390c7813774dcfa55e5f2 354 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 19 344 3.0E-141 T 11-11-2016 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 Gferi_RS06945 86f1867747c390c7813774dcfa55e5f2 354 Pfam PF03102 NeuB family 39 277 2.0E-90 T 11-11-2016 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 Gferi_RS06945 86f1867747c390c7813774dcfa55e5f2 354 Gene3D G3DSA:3.20.20.70 6 276 3.0E-107 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS06945 86f1867747c390c7813774dcfa55e5f2 354 Pfam PF08666 SAF domain 293 350 1.0E-11 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS06945 86f1867747c390c7813774dcfa55e5f2 354 SUPERFAMILY SSF51269 287 350 1.83E-17 T 11-11-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal Reactome: R-HSA-4085001 Gferi_RS06945 86f1867747c390c7813774dcfa55e5f2 354 SUPERFAMILY SSF51569 9 302 1.71E-91 T 11-11-2016 Gferi_RS06945 86f1867747c390c7813774dcfa55e5f2 354 SMART SM00858 292 350 3.7E-10 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS24630 b83f1bfb9c111badd8cbd0790771414d 313 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 6 300 40.384 T 11-11-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 Gferi_RS24630 b83f1bfb9c111badd8cbd0790771414d 313 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 10 301 5.0E-122 T 11-11-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 Gferi_RS24630 b83f1bfb9c111badd8cbd0790771414d 313 SUPERFAMILY SSF53697 10 251 9.79E-73 T 11-11-2016 Gferi_RS24630 b83f1bfb9c111badd8cbd0790771414d 313 Pfam PF01380 SIS domain 132 211 6.4E-11 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS24630 b83f1bfb9c111badd8cbd0790771414d 313 Gene3D G3DSA:1.10.8.10 246 273 4.0E-4 T 11-11-2016 Gferi_RS24630 b83f1bfb9c111badd8cbd0790771414d 313 Gene3D G3DSA:3.40.50.10490 8 245 1.7E-85 T 11-11-2016 Gferi_RS24630 b83f1bfb9c111badd8cbd0790771414d 313 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 189 206 - T 11-11-2016 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 Gene3D G3DSA:1.10.10.250 72 140 7.2E-31 T 11-11-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 1.1E-32 T 11-11-2016 IPR020784 Ribosomal protein L11, N-terminal Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 31.648 T 11-11-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 SUPERFAMILY SSF54747 3 72 3.27E-31 T 11-11-2016 IPR020784 Ribosomal protein L11, N-terminal Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 3.5E-25 T 11-11-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 140 8.6E-65 T 11-11-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 Gene3D G3DSA:3.30.1550.10 2 71 2.9E-40 T 11-11-2016 IPR020784 Ribosomal protein L11, N-terminal Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 70 1.0E-12 T 11-11-2016 Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 SMART SM00649 9 140 2.1E-85 T 11-11-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17325 603480e7e4efa11ad5b287fb50a02332 141 SUPERFAMILY SSF46906 67 140 1.96E-26 T 11-11-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Gferi_RS06690 ef053343bc70a540c6ce99c31fbea59c 330 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 13 306 1.0E-45 T 11-11-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 Gferi_RS06690 ef053343bc70a540c6ce99c31fbea59c 330 Pfam PF03812 2-keto-3-deoxygluconate permease 2 307 1.1E-117 T 11-11-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Gene3D G3DSA:2.70.150.10 3 44 4.9E-42 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Gene3D G3DSA:2.70.150.10 99 214 4.9E-42 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 SUPERFAMILY SSF81665 3 104 2.22E-109 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 SUPERFAMILY SSF81665 215 308 2.22E-109 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 SUPERFAMILY SSF81665 672 871 2.22E-109 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Gene3D G3DSA:3.40.50.1000 528 558 7.8E-4 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Gene3D G3DSA:3.40.50.1000 293 316 7.8E-4 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 314 328 1.4E-37 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 520 531 1.4E-37 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 542 552 1.4E-37 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 646 658 1.4E-37 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 622 641 1.4E-37 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 151 165 1.4E-37 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 316 322 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Pfam PF00690 Cation transporter/ATPase, N-terminus 1 61 5.9E-15 T 11-11-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 SMART SM00831 1 66 3.7E-11 T 11-11-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Pfam PF00702 haloacid dehalogenase-like hydrolase 311 635 2.5E-22 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Gene3D G3DSA:1.20.1110.10 45 98 5.4E-110 T 11-11-2016 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Gene3D G3DSA:1.20.1110.10 591 870 5.4E-110 T 11-11-2016 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Gene3D G3DSA:3.40.1110.10 317 527 1.2E-60 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 SUPERFAMILY SSF81653 104 214 1.7E-29 T 11-11-2016 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 SUPERFAMILY SSF56784 475 726 4.59E-59 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 SUPERFAMILY SSF56784 312 332 4.59E-59 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 SUPERFAMILY SSF81660 321 524 4.58E-54 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Pfam PF00689 Cation transporting ATPase, C-terminus 706 858 1.9E-39 T 11-11-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 654 679 1.2E-16 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 622 638 1.2E-16 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 478 496 1.2E-16 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 594 610 1.2E-16 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 590 712 1.5E-35 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 208 336 8.0E-24 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS18765 23e82b944b1e8b843e16f5d50207023e 887 Pfam PF00122 E1-E2 ATPase 72 305 3.3E-64 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS12160 218130d5a5eff8695d2238f5f152df2d 78 SMART SM00966 8 51 3.8E-9 T 11-11-2016 IPR007159 SpoVT-AbrB domain GO:0003677 Gferi_RS12160 218130d5a5eff8695d2238f5f152df2d 78 Gene3D G3DSA:2.10.260.10 1 52 9.8E-30 T 11-11-2016 Gferi_RS12160 218130d5a5eff8695d2238f5f152df2d 78 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 50 2.1E-10 T 11-11-2016 IPR007159 SpoVT-AbrB domain GO:0003677 Gferi_RS12160 218130d5a5eff8695d2238f5f152df2d 78 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 48 5.7E-10 T 11-11-2016 IPR007159 SpoVT-AbrB domain GO:0003677 Gferi_RS12160 218130d5a5eff8695d2238f5f152df2d 78 SUPERFAMILY SSF89447 1 53 1.31E-16 T 11-11-2016 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Pfam PF01588 Putative tRNA binding domain 564 648 1.7E-29 T 11-11-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Gene3D G3DSA:3.40.50.620 226 334 1.2E-74 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Gene3D G3DSA:3.40.50.620 3 114 1.2E-74 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 511 9.9E-170 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Pfam PF08264 Anticodon-binding domain of tRNA 392 495 1.2E-7 T 11-11-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 1.4E-31 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 8 21 1.4E-31 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 257 272 1.4E-31 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 349 360 1.4E-31 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 224 235 1.4E-31 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 1.4E-31 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 3 140 1.2E-10 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Gene3D G3DSA:2.40.50.140 550 651 1.7E-40 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 SUPERFAMILY SSF50249 557 648 6.86E-34 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 525 652 3.0E-42 T 11-11-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 509 50.487 T 11-11-2016 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Gene3D G3DSA:1.10.730.10 339 510 1.4E-51 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Pfam PF09334 tRNA synthetases class I (M) 148 361 3.0E-66 T 11-11-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 SUPERFAMILY SSF52374 3 348 1.97E-114 T 11-11-2016 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 SUPERFAMILY SSF47323 351 572 1.57E-44 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS12120 45cf5041d6affb3e16f272efd16b21b4 656 Gene3D G3DSA:2.170.220.10 117 225 1.7E-47 T 11-11-2016 Gferi_RS23800 7e8607d909fbb4419ecae3e9473180db 226 Gene3D G3DSA:1.10.1900.10 14 86 4.2E-9 T 11-11-2016 IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein GO:0003723 Gferi_RS23800 7e8607d909fbb4419ecae3e9473180db 226 SUPERFAMILY SSF158560 12 87 1.1E-16 T 11-11-2016 Gferi_RS23800 7e8607d909fbb4419ecae3e9473180db 226 Pfam PF06304 Protein of unknown function (DUF1048) 14 86 8.0E-8 T 11-11-2016 IPR008316 Uncharacterised conserved protein UCP029876 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 SMART SM00062 34 254 1.8E-19 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Pfam PF13426 PAS domain 331 430 9.4E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Gene3D G3DSA:3.30.450.20 318 429 2.5E-8 T 11-11-2016 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 SUPERFAMILY SSF47384 441 510 1.16E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 628 1.7E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 647 1.7E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 614 1.7E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Gene3D G3DSA:1.10.287.130 441 508 5.5E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 SMART SM00387 553 669 8.0E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 252 3.3E-31 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 SUPERFAMILY SSF53850 35 252 7.21E-36 T 11-11-2016 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 SUPERFAMILY SSF55785 314 429 2.66E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Pfam PF00512 His Kinase A (phospho-acceptor) domain 447 508 1.6E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 SUPERFAMILY SSF55874 513 665 1.31E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Gene3D G3DSA:3.30.565.10 514 663 6.2E-30 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Gene3D G3DSA:3.40.190.10 35 118 5.7E-25 T 11-11-2016 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Gene3D G3DSA:3.40.190.10 213 252 5.7E-25 T 11-11-2016 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 SMART SM00388 446 512 7.4E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13615 6d1bfed10ae195bb8d36727a1b5d98e6 670 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 553 664 1.6E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 SUPERFAMILY SSF55781 105 180 3.71E-6 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 PIRSF PIRSF026579 1 183 1.2E-90 T 11-11-2016 IPR014213 Sporulation stage V, protein T Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 Gene3D G3DSA:2.10.260.10 2 52 2.4E-27 T 11-11-2016 Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 TIGRFAM TIGR02851 spore_V_T: stage V sporulation protein T 2 182 1.2E-88 T 11-11-2016 IPR014213 Sporulation stage V, protein T Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 9 51 1.2E-9 T 11-11-2016 IPR007159 SpoVT-AbrB domain GO:0003677 Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 Pfam PF15714 Stage V sporulation protein T C-terminal, transcription factor 54 182 7.5E-48 T 11-11-2016 Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 SMART SM00966 8 52 2.2E-9 T 11-11-2016 IPR007159 SpoVT-AbrB domain GO:0003677 Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 Gene3D G3DSA:3.30.450.40 73 178 1.6E-9 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 49 5.0E-15 T 11-11-2016 IPR007159 SpoVT-AbrB domain GO:0003677 Gferi_RS16755 eb5b06500a42756011709ce4522906e9 183 SUPERFAMILY SSF89447 2 52 1.1E-13 T 11-11-2016 Gferi_RS05230 f673a7fcc1597cd609e3f43732a1b35d 226 SUPERFAMILY SSF46785 149 220 8.11E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05230 f673a7fcc1597cd609e3f43732a1b35d 226 SUPERFAMILY SSF51206 1 146 5.5E-27 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS05230 f673a7fcc1597cd609e3f43732a1b35d 226 Gene3D G3DSA:1.10.10.10 151 224 3.6E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05230 f673a7fcc1597cd609e3f43732a1b35d 226 Pfam PF13545 Crp-like helix-turn-helix domain 155 223 1.4E-15 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS05230 f673a7fcc1597cd609e3f43732a1b35d 226 Pfam PF00027 Cyclic nucleotide-binding domain 34 122 5.0E-9 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS05230 f673a7fcc1597cd609e3f43732a1b35d 226 Gene3D G3DSA:2.60.120.10 9 149 3.3E-29 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS05230 f673a7fcc1597cd609e3f43732a1b35d 226 SMART SM00419 168 216 4.2E-5 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS05230 f673a7fcc1597cd609e3f43732a1b35d 226 SMART SM00100 13 134 0.0042 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SUPERFAMILY SSF52540 784 992 2.56E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 Pfam PF00270 DEAD/DEAH box helicase 627 766 5.2E-17 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SMART SM00490 828 912 9.0E-22 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 139 1078 0.0 T 11-11-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 Pfam PF00271 Helicase conserved C-terminal domain 808 911 2.9E-19 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SUPERFAMILY SSF52540 360 470 2.92E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SUPERFAMILY SSF141259 473 550 4.18E-25 T 11-11-2016 IPR003711 CarD-like/TRCF domain Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 Pfam PF02559 CarD-like/TRCF domain 482 577 9.5E-30 T 11-11-2016 IPR003711 CarD-like/TRCF domain Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 27 1106 29.075 T 11-11-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SUPERFAMILY SSF143517 990 1144 3.01E-37 T 11-11-2016 Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SUPERFAMILY SSF52540 525 785 1.63E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 Gene3D G3DSA:3.40.50.300 591 788 1.9E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 Gene3D G3DSA:3.30.2060.10 124 198 2.5E-12 T 11-11-2016 Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 Gene3D G3DSA:3.40.50.300 799 958 1.5E-39 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SMART SM00487 602 792 2.9E-35 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 Pfam PF03461 TRCF domain 1006 1098 6.5E-28 T 11-11-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SMART SM00982 1005 1105 2.4E-35 T 11-11-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SUPERFAMILY SSF52540 4 351 4.91E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16745 0086705dbdf6ef7cd3f7a9ac0f14dd35 1148 SMART SM01058 481 578 2.7E-45 T 11-11-2016 IPR003711 CarD-like/TRCF domain Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 SMART SM00345 21 79 6.8E-21 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 SUPERFAMILY SSF46785 12 83 9.9E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 SMART SM00895 89 213 2.9E-24 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 79 4.8E-20 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 50 69 1.5E-5 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 50 1.5E-5 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 2.1E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 2.1E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 Pfam PF07729 FCD domain 89 212 2.3E-29 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 Gene3D G3DSA:1.10.10.10 10 80 2.1E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 SUPERFAMILY SSF48008 85 219 2.35E-32 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS11595 d5c2616696f49e2d54d364805d1274a5 228 Gene3D G3DSA:1.20.120.530 83 222 1.1E-34 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 Pfam PF02274 Amidinotransferase 21 404 4.8E-91 T 11-11-2016 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 PRINTS PR01466 Bacterial arginine deiminase signature 154 172 2.7E-54 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 PRINTS PR01466 Bacterial arginine deiminase signature 182 197 2.7E-54 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 PRINTS PR01466 Bacterial arginine deiminase signature 386 404 2.7E-54 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 PRINTS PR01466 Bacterial arginine deiminase signature 5 25 2.7E-54 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 PRINTS PR01466 Bacterial arginine deiminase signature 343 360 2.7E-54 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 PRINTS PR01466 Bacterial arginine deiminase signature 363 377 2.7E-54 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 TIGRFAM TIGR01078 arcA: arginine deiminase 7 405 5.4E-157 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 PIRSF PIRSF006356 1 407 1.5E-158 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 SUPERFAMILY SSF55909 5 405 4.12E-121 T 11-11-2016 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 Gene3D G3DSA:1.10.3930.10 71 154 2.5E-15 T 11-11-2016 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 Hamap MF_00242 Arginine deiminase [arcA]. 4 407 43.807 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 Gene3D G3DSA:3.75.10.10 155 405 1.2E-123 T 11-11-2016 Gferi_RS22975 b2b0f6c022af8c15c182469e04b82081 408 Gene3D G3DSA:3.75.10.10 7 69 1.2E-123 T 11-11-2016 Gferi_RS04505 5844f497e6d741239bae108ef1e45971 762 ProSitePatterns PS00850 Glycine radical domain signature. 733 741 - T 11-11-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Gferi_RS04505 5844f497e6d741239bae108ef1e45971 762 Pfam PF02901 Pyruvate formate lyase-like 2 623 1.7E-198 T 11-11-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 Gferi_RS04505 5844f497e6d741239bae108ef1e45971 762 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 2 762 3.6E-301 T 11-11-2016 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 Gferi_RS04505 5844f497e6d741239bae108ef1e45971 762 Gene3D G3DSA:3.20.70.20 2 761 2.0E-250 T 11-11-2016 Gferi_RS04505 5844f497e6d741239bae108ef1e45971 762 SUPERFAMILY SSF51998 2 761 3.66E-216 T 11-11-2016 Gferi_RS04505 5844f497e6d741239bae108ef1e45971 762 Pfam PF01228 Glycine radical 643 744 7.9E-28 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 Gferi_RS17660 7577f54615543530ea3cfacfc209dd00 330 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 244 327 5.4E-25 T 11-11-2016 IPR019491 Lipoate protein ligase, C-terminal Gferi_RS17660 7577f54615543530ea3cfacfc209dd00 330 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 4 322 1.6E-111 T 11-11-2016 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 Reactome: R-HSA-389661 Gferi_RS17660 7577f54615543530ea3cfacfc209dd00 330 SUPERFAMILY SSF82649 243 329 1.26E-22 T 11-11-2016 Gferi_RS17660 7577f54615543530ea3cfacfc209dd00 330 Pfam PF03099 Biotin/lipoate A/B protein ligase family 47 152 2.1E-9 T 11-11-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 Gferi_RS17660 7577f54615543530ea3cfacfc209dd00 330 SUPERFAMILY SSF55681 1 242 1.63E-83 T 11-11-2016 Gferi_RS17660 7577f54615543530ea3cfacfc209dd00 330 Gene3D G3DSA:3.30.390.50 244 329 2.1E-28 T 11-11-2016 Gferi_RS17660 7577f54615543530ea3cfacfc209dd00 330 Gene3D G3DSA:3.90.1550.10 1 242 4.5E-86 T 11-11-2016 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 11-11-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 Gene3D G3DSA:3.30.70.100 1 66 1.4E-23 T 11-11-2016 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 3 66 3.2E-18 T 11-11-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 SUPERFAMILY SSF55008 2 66 1.1E-19 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 PRINTS PR00944 Copper ion binding protein signature 14 27 1.2E-7 T 11-11-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 PRINTS PR00944 Copper ion binding protein signature 27 40 1.2E-7 T 11-11-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 PRINTS PR00944 Copper ion binding protein signature 40 52 1.2E-7 T 11-11-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 PRINTS PR00944 Copper ion binding protein signature 52 65 1.2E-7 T 11-11-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 PRINTS PR00944 Copper ion binding protein signature 2 14 1.2E-7 T 11-11-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 Gferi_RS06210 f499a2c34acaab509ce9a23e6ac1eade 71 Pfam PF00403 Heavy-metal-associated domain 5 64 4.5E-18 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS20620 af77700d12edfc980fd223f4f315251a 163 Gene3D G3DSA:2.20.28.10 129 162 2.0E-6 T 11-11-2016 IPR004039 Rubredoxin-type fold Gferi_RS20620 af77700d12edfc980fd223f4f315251a 163 Gene3D G3DSA:1.20.1260.10 2 127 2.5E-43 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS20620 af77700d12edfc980fd223f4f315251a 163 SUPERFAMILY SSF47240 1 126 1.09E-39 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS20620 af77700d12edfc980fd223f4f315251a 163 SUPERFAMILY SSF57802 128 162 8.63E-5 T 11-11-2016 Gferi_RS20620 af77700d12edfc980fd223f4f315251a 163 Pfam PF02915 Rubrerythrin 7 121 7.5E-23 T 11-11-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Gferi_RS26835 7f334dd4d793bd6d29675fda4885d485 365 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 6 361 39.662 T 11-11-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 Gferi_RS26835 7f334dd4d793bd6d29675fda4885d485 365 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 360 1.2E-108 T 11-11-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 Gferi_RS26835 7f334dd4d793bd6d29675fda4885d485 365 Pfam PF03054 tRNA methyl transferase 7 360 2.9E-120 T 11-11-2016 Gferi_RS26835 7f334dd4d793bd6d29675fda4885d485 365 Gene3D G3DSA:2.40.30.10 286 362 9.2E-23 T 11-11-2016 Gferi_RS26835 7f334dd4d793bd6d29675fda4885d485 365 Gene3D G3DSA:3.40.50.620 4 217 6.2E-84 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS26835 7f334dd4d793bd6d29675fda4885d485 365 SUPERFAMILY SSF52402 5 252 5.29E-54 T 11-11-2016 Gferi_RS26835 7f334dd4d793bd6d29675fda4885d485 365 Gene3D G3DSA:2.30.30.280 225 281 7.9E-15 T 11-11-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 SUPERFAMILY SSF51556 55 346 3.87E-101 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 PIRSF PIRSF038994 1 379 1.2E-133 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 Gene3D G3DSA:3.20.20.140 68 326 5.5E-107 T 11-11-2016 Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 3 372 1.6E-114 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 SUPERFAMILY SSF51338 346 379 3.8E-12 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 SUPERFAMILY SSF51338 3 54 3.8E-12 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 Pfam PF01979 Amidohydrolase family 52 375 5.8E-30 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 Gene3D G3DSA:2.30.40.10 2 67 5.8E-14 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS15530 b805c53fe0f28936fe77995a74d05bf8 382 Gene3D G3DSA:2.30.40.10 327 377 1.5E-14 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS02245 0a5eb5202addc8aa2abd4e8dbdb525da 125 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 93 1.9E-16 T 11-11-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 Gferi_RS02245 0a5eb5202addc8aa2abd4e8dbdb525da 125 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 2 120 8.7E-46 T 11-11-2016 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-73614 Gferi_RS02245 0a5eb5202addc8aa2abd4e8dbdb525da 125 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 47 87 - T 11-11-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Gferi_RS02245 0a5eb5202addc8aa2abd4e8dbdb525da 125 Gene3D G3DSA:3.40.140.10 2 124 4.8E-52 T 11-11-2016 Gferi_RS02245 0a5eb5202addc8aa2abd4e8dbdb525da 125 SUPERFAMILY SSF53927 1 123 8.36E-47 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 Gferi_RS01035 0477943f60916c94461029ed00c9b11a 180 SMART SM00530 124 180 0.81 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS01035 0477943f60916c94461029ed00c9b11a 180 SMART SM00530 55 110 1.3E-12 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS01035 0477943f60916c94461029ed00c9b11a 180 SUPERFAMILY SSF47413 50 115 6.48E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01035 0477943f60916c94461029ed00c9b11a 180 SUPERFAMILY SSF47413 121 175 1.49E-9 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01035 0477943f60916c94461029ed00c9b11a 180 Pfam PF01381 Helix-turn-helix 125 169 2.4E-5 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS01035 0477943f60916c94461029ed00c9b11a 180 Gene3D G3DSA:1.10.260.40 51 116 2.5E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01035 0477943f60916c94461029ed00c9b11a 180 Gene3D G3DSA:1.10.260.40 119 173 4.2E-9 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01035 0477943f60916c94461029ed00c9b11a 180 Pfam PF12844 Helix-turn-helix domain 53 115 2.6E-14 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS21865 a99809197eeb005221a55ba50c43ca30 183 Pfam PF01381 Helix-turn-helix 8 59 8.3E-15 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS21865 a99809197eeb005221a55ba50c43ca30 183 Pfam PF07883 Cupin domain 106 168 1.7E-15 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS21865 a99809197eeb005221a55ba50c43ca30 183 SUPERFAMILY SSF51182 62 178 3.22E-26 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS21865 a99809197eeb005221a55ba50c43ca30 183 Gene3D G3DSA:2.60.120.10 103 178 1.1E-21 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS21865 a99809197eeb005221a55ba50c43ca30 183 SMART SM00530 7 62 1.6E-15 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS21865 a99809197eeb005221a55ba50c43ca30 183 Gene3D G3DSA:1.10.260.40 6 102 2.0E-22 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS21865 a99809197eeb005221a55ba50c43ca30 183 SUPERFAMILY SSF47413 5 67 8.31E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Gene3D G3DSA:3.30.450.20 253 368 1.8E-23 T 11-11-2016 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SUPERFAMILY SSF47384 552 633 4.9E-22 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Gene3D G3DSA:3.30.565.10 633 800 8.4E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Pfam PF00072 Response regulator receiver domain 852 964 1.1E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SUPERFAMILY SSF55781 409 548 3.05E-11 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SUPERFAMILY SSF52172 849 970 1.57E-36 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SUPERFAMILY SSF55785 244 368 7.48E-23 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00086 205 247 0.0027 T 11-11-2016 IPR001610 PAC motif Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00086 330 370 0.094 T 11-11-2016 IPR001610 PAC motif Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SUPERFAMILY SSF55785 136 247 2.79E-17 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 679 794 4.1E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Gene3D G3DSA:1.10.287.130 562 628 7.6E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 PRINTS PR00344 Bacterial sensor protein C-terminal signature 738 748 3.6E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 PRINTS PR00344 Bacterial sensor protein C-terminal signature 779 792 3.6E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 PRINTS PR00344 Bacterial sensor protein C-terminal signature 720 734 3.6E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 PRINTS PR00344 Bacterial sensor protein C-terminal signature 755 773 3.6E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00387 679 795 1.8E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Pfam PF13426 PAS domain 272 369 2.8E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Pfam PF13426 PAS domain 26 124 2.4E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SUPERFAMILY SSF55785 12 124 1.19E-19 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Gene3D G3DSA:3.30.450.20 133 252 1.5E-21 T 11-11-2016 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Pfam PF01590 GAF domain 404 545 1.6E-7 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SUPERFAMILY SSF55874 621 791 9.95E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00065 399 555 6.6E-8 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Gene3D G3DSA:3.40.50.2300 847 969 4.2E-41 T 11-11-2016 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00388 567 632 1.9E-26 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Pfam PF08448 PAS fold 138 247 6.4E-13 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Pfam PF00512 His Kinase A (phospho-acceptor) domain 568 631 2.1E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Gene3D G3DSA:3.30.450.40 372 559 4.5E-13 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00448 850 964 2.3E-33 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 Gene3D G3DSA:3.30.450.20 19 124 1.1E-18 T 11-11-2016 Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00091 131 199 0.065 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00091 259 324 4.6E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 SMART SM00091 15 81 4.4E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 255 377 8.9E-24 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 14 129 1.3E-16 T 11-11-2016 IPR000014 PAS domain Gferi_RS06830 617294699a811f50cd982fdff8e8cb54 978 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 128 254 1.5E-15 T 11-11-2016 IPR000014 PAS domain Gferi_RS09860 cdc4071ca89b039108e68eb180b2f756 304 PIRSF PIRSF000164 1 302 4.9E-76 T 11-11-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Gferi_RS09860 cdc4071ca89b039108e68eb180b2f756 304 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 239 259 - T 11-11-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Gferi_RS09860 cdc4071ca89b039108e68eb180b2f756 304 SUPERFAMILY SSF51395 2 300 2.75E-81 T 11-11-2016 Gferi_RS09860 cdc4071ca89b039108e68eb180b2f756 304 Gene3D G3DSA:3.20.20.70 2 299 2.0E-84 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS09860 cdc4071ca89b039108e68eb180b2f756 304 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 6 299 6.9E-104 T 11-11-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Gferi_RS09860 cdc4071ca89b039108e68eb180b2f756 304 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 40 59 - T 11-11-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Gferi_RS09860 cdc4071ca89b039108e68eb180b2f756 304 Pfam PF01180 Dihydroorotate dehydrogenase 6 286 3.3E-66 T 11-11-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Gferi_RS09860 cdc4071ca89b039108e68eb180b2f756 304 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 6 301 37.874 T 11-11-2016 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 Gferi_RS20360 510e06cb0ea4bb2bf80aa3fa8d9c97b7 269 SUPERFAMILY SSF89550 1 269 5.49E-52 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS20360 510e06cb0ea4bb2bf80aa3fa8d9c97b7 269 SMART SM00481 2 87 7.1E-8 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS20360 510e06cb0ea4bb2bf80aa3fa8d9c97b7 269 Gene3D G3DSA:3.20.20.140 1 266 7.2E-37 T 11-11-2016 Gferi_RS20360 510e06cb0ea4bb2bf80aa3fa8d9c97b7 269 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 3 243 1.2E-54 T 11-11-2016 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 Gferi_RS20360 510e06cb0ea4bb2bf80aa3fa8d9c97b7 269 Pfam PF02811 PHP domain 3 198 9.5E-18 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 Gene3D G3DSA:3.40.47.10 149 194 2.5E-25 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 Gene3D G3DSA:3.40.47.10 280 395 2.5E-25 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 SUPERFAMILY SSF53901 274 394 1.49E-20 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 SUPERFAMILY SSF53901 11 269 2.39E-33 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 Pfam PF00108 Thiolase, N-terminal domain 14 263 3.1E-22 T 11-11-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 Gene3D G3DSA:3.40.47.10 14 125 1.1E-21 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 Gene3D G3DSA:3.40.47.10 197 270 1.1E-21 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 PIRSF PIRSF000429 2 396 1.3E-54 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS09590 a93d23be9222e8a200ef82556befc856 396 Pfam PF02803 Thiolase, C-terminal domain 278 394 1.2E-18 T 11-11-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Gferi_RS20805 b133cf418e1763779d83eaa9a5149bd7 211 Gene3D G3DSA:1.10.3720.10 5 206 5.8E-25 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20805 b133cf418e1763779d83eaa9a5149bd7 211 SUPERFAMILY SSF161098 5 203 1.06E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20805 b133cf418e1763779d83eaa9a5149bd7 211 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 209 2.4E-12 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 622 634 6.0E-21 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 252 266 6.0E-21 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 598 617 6.0E-21 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 542 552 6.0E-21 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 404 418 6.0E-21 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 153 702 2.5E-152 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 176 678 3.5E-72 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 Pfam PF00122 E1-E2 ATPase 174 395 8.6E-61 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 SUPERFAMILY SSF55008 6 65 6.94E-12 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 Gene3D G3DSA:3.40.1110.10 395 428 2.1E-4 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 Gene3D G3DSA:2.70.150.10 153 303 7.6E-27 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 406 412 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00941 Cadmium-transporting ATPase signature 9 18 1.9E-11 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00941 Cadmium-transporting ATPase signature 268 284 1.9E-11 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00941 Cadmium-transporting ATPase signature 287 301 1.9E-11 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00941 Cadmium-transporting ATPase signature 187 207 1.9E-11 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 PRINTS PR00941 Cadmium-transporting ATPase signature 20 41 1.9E-11 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 SUPERFAMILY SSF81665 153 206 7.98E-11 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 SUPERFAMILY SSF81665 303 397 7.98E-11 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 153 700 2.6E-168 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 Pfam PF00403 Heavy-metal-associated domain 9 55 1.1E-9 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 Gene3D G3DSA:3.40.50.1000 521 669 6.9E-41 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 Gene3D G3DSA:3.30.70.100 6 65 1.9E-12 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 SUPERFAMILY SSF56784 460 699 6.6E-54 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 SUPERFAMILY SSF56784 402 422 6.6E-54 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 Pfam PF00702 haloacid dehalogenase-like hydrolase 400 612 3.1E-34 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 SUPERFAMILY SSF81653 206 302 2.35E-23 T 11-11-2016 Gferi_RS24000 1a32933e0c25718073afa74dd0b504a9 708 Gene3D G3DSA:3.40.1110.10 429 520 1.0E-7 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 ProSitePatterns PS00801 Transketolase signature 1. 13 33 - T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 11-11-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 SUPERFAMILY SSF52518 4 324 4.61E-114 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 Gene3D G3DSA:3.40.50.970 3 324 7.1E-126 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 SUPERFAMILY SSF52922 533 662 1.19E-37 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 SUPERFAMILY SSF52518 351 527 9.27E-70 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 Gene3D G3DSA:3.40.50.970 331 535 2.3E-78 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 Gene3D G3DSA:3.40.50.920 536 662 9.9E-44 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 Pfam PF02780 Transketolase, C-terminal domain 545 653 1.8E-6 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 SMART SM00861 354 525 6.7E-71 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 Pfam PF02779 Transketolase, pyrimidine binding domain 353 524 3.2E-46 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 5 333 1.0E-149 T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS23210 0ba609bf0e4c98c3384e35e9591aedc3 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 7 658 5.8E-280 T 11-11-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Gene3D G3DSA:2.60.40.1080 578 629 1.6E-4 T 11-11-2016 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 SUPERFAMILY SSF56300 1134 1419 1.9E-37 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 SUPERFAMILY SSF49265 1793 1884 1.88E-18 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Gene3D G3DSA:3.60.21.10 160 448 7.3E-54 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Gene3D G3DSA:3.60.21.10 1132 1422 2.0E-53 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Pfam PF00149 Calcineurin-like phosphoesterase 164 353 1.4E-16 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Pfam PF00149 Calcineurin-like phosphoesterase 1136 1325 2.5E-14 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 SUPERFAMILY SSF56300 164 436 3.32E-35 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 SMART SM00060 1794 1872 7.9E-10 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Pfam PF16656 Purple acid Phosphatase, N-terminal domain 62 156 1.6E-14 T 11-11-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Pfam PF16656 Purple acid Phosphatase, N-terminal domain 1034 1129 5.3E-14 T 11-11-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Pfam PF00395 S-layer homology domain 2068 2111 6.4E-13 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Pfam PF00395 S-layer homology domain 1940 1982 2.9E-11 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Pfam PF00395 S-layer homology domain 2000 2042 4.2E-8 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Gene3D G3DSA:2.60.40.380 1034 1131 3.8E-6 T 11-11-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Gene3D G3DSA:2.60.40.380 63 157 1.1E-8 T 11-11-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 SUPERFAMILY SSF49363 63 157 3.4E-8 T 11-11-2016 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Pfam PF00041 Fibronectin type III domain 1796 1875 1.4E-8 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Gene3D G3DSA:2.60.120.260 1539 1640 1.4E-4 T 11-11-2016 IPR008979 Galactose-binding domain-like Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 SUPERFAMILY SSF49785 1538 1641 1.34E-5 T 11-11-2016 IPR008979 Galactose-binding domain-like Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 Gene3D G3DSA:2.60.40.10 1797 1880 3.1E-21 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS21525 f741e5e11c27a50aa9c683441d8eb09d 2122 SUPERFAMILY SSF49363 1032 1129 1.83E-6 T 11-11-2016 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 SUPERFAMILY SSF55785 13 101 4.83E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 SUPERFAMILY SSF52540 266 507 1.07E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Gene3D G3DSA:3.30.450.20 116 199 1.1E-11 T 11-11-2016 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 290 303 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Gene3D G3DSA:3.30.450.20 12 115 1.1E-13 T 11-11-2016 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Pfam PF00989 PAS fold 130 184 2.7E-6 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 SUPERFAMILY SSF46689 480 572 5.63E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Gene3D G3DSA:1.10.8.60 440 517 1.6E-22 T 11-11-2016 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 124 182 9.1E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 119 7.1E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Pfam PF13426 PAS domain 22 112 1.2E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 480 489 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Pfam PF00158 Sigma-54 interaction domain 266 433 5.6E-70 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Pfam PF02954 Bacterial regulatory protein, Fis family 531 571 8.8E-14 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 353 368 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 SUPERFAMILY SSF55785 109 222 3.4E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 SMART SM00091 11 77 8.4E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 SMART SM00091 128 194 2.6E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 SMART SM00382 286 430 2.8E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Gene3D G3DSA:3.40.50.300 262 439 2.5E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 537 554 3.1E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 554 573 3.1E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11715 1a49cf8b55c0e3569edf8899ad6a4a18 573 Gene3D G3DSA:1.10.10.60 524 572 3.5E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 Gene3D G3DSA:3.40.50.300 140 314 2.9E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 SUPERFAMILY SSF52540 142 385 1.24E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 SMART SM00382 162 305 1.2E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 SMART SM00448 3 113 9.8E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 Pfam PF00072 Response regulator receiver domain 5 113 7.3E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 SUPERFAMILY SSF52172 4 185 1.57E-42 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 450 5.0E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 414 431 5.0E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 Gene3D G3DSA:1.10.10.60 395 450 2.2E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 Gene3D G3DSA:1.10.8.60 315 390 3.0E-22 T 11-11-2016 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 Pfam PF00158 Sigma-54 interaction domain 142 309 5.6E-64 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 Gene3D G3DSA:3.40.50.2300 4 127 1.2E-32 T 11-11-2016 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 Pfam PF02954 Bacterial regulatory protein, Fis family 408 448 6.4E-14 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 SUPERFAMILY SSF46689 356 450 4.93E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13620 934603024d632aeaffbb0008091940fd 450 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 166 179 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 Gene3D G3DSA:3.50.50.60 177 196 3.2E-5 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 6.1E-33 T 11-11-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 Gene3D G3DSA:3.40.50.1770 1 176 3.7E-45 T 11-11-2016 Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 SMART SM01002 149 297 4.4E-50 T 11-11-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 352 2.7E-57 T 11-11-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 SMART SM01003 4 137 7.6E-46 T 11-11-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 SUPERFAMILY SSF52283 305 360 5.7E-48 T 11-11-2016 Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 SUPERFAMILY SSF52283 1 137 5.7E-48 T 11-11-2016 Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 SUPERFAMILY SSF51735 137 303 6.44E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25910 43699e5dd6f953edb7916c81eee601cb 371 Gene3D G3DSA:3.40.50.1770 197 351 4.1E-16 T 11-11-2016 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 Gene3D G3DSA:3.30.930.10 149 492 1.1E-120 T 11-11-2016 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 Gene3D G3DSA:2.40.50.140 14 147 2.1E-41 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 Pfam PF01336 OB-fold nucleic acid binding domain 61 137 2.6E-15 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 SUPERFAMILY SSF55681 154 494 9.96E-119 T 11-11-2016 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 Pfam PF00152 tRNA synthetases class II (D, K and N) 154 493 2.1E-78 T 11-11-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 SUPERFAMILY SSF50249 11 147 4.5E-37 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 14 495 3.5E-202 T 11-11-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 PIRSF PIRSF039101 2 498 2.4E-194 T 11-11-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 19 497 44.023 T 11-11-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 191 201 3.4E-39 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 378 394 3.4E-39 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 236 249 3.4E-39 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 254 271 3.4E-39 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS16945 6d3915fc4709a0cbf7bdf60deb8f3edb 498 PRINTS PR00982 Lysyl-tRNA synthetase signature 207 223 3.4E-39 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS20790 cc1047a5ca3ea0083023b34927a17cc4 211 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 3 195 23.67 T 11-11-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 Gferi_RS20790 cc1047a5ca3ea0083023b34927a17cc4 211 Pfam PF12804 MobA-like NTP transferase domain 7 154 4.4E-30 T 11-11-2016 IPR025877 MobA-like NTP transferase Gferi_RS20790 cc1047a5ca3ea0083023b34927a17cc4 211 SUPERFAMILY SSF53448 6 191 5.63E-27 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20790 cc1047a5ca3ea0083023b34927a17cc4 211 Gene3D G3DSA:3.90.550.10 6 201 1.1E-43 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS16230 93bd488622383424dd0836820a007daa 474 Gene3D G3DSA:3.40.50.300 150 326 2.5E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16230 93bd488622383424dd0836820a007daa 474 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 8 124 4.8E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS16230 93bd488622383424dd0836820a007daa 474 SMART SM00091 6 71 9.9E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS16230 93bd488622383424dd0836820a007daa 474 Pfam PF02954 Bacterial regulatory protein, Fis family 426 466 2.1E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 SMART SM00382 174 317 1.3E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS16230 93bd488622383424dd0836820a007daa 474 Gene3D G3DSA:1.10.10.60 416 468 4.1E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 SUPERFAMILY SSF46689 367 468 1.36E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 1.9E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 469 1.9E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 Gene3D G3DSA:3.30.450.20 8 132 4.8E-18 T 11-11-2016 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 SUPERFAMILY SSF55785 7 112 4.51E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS16230 93bd488622383424dd0836820a007daa 474 Gene3D G3DSA:1.10.8.60 327 403 3.6E-22 T 11-11-2016 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 178 191 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 Pfam PF08448 PAS fold 12 119 6.7E-9 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 Pfam PF00158 Sigma-54 interaction domain 154 320 1.3E-62 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 240 255 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS16230 93bd488622383424dd0836820a007daa 474 SUPERFAMILY SSF52540 153 398 8.98E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 Gene3D G3DSA:3.40.50.300 302 479 4.1E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 393 408 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 SMART SM00382 326 471 1.4E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 Pfam PF02954 Bacterial regulatory protein, Fis family 564 605 3.0E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 Gene3D G3DSA:1.10.8.60 480 536 4.7E-19 T 11-11-2016 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 SUPERFAMILY SSF55785 167 281 1.31E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 Pfam PF00158 Sigma-54 interaction domain 306 473 3.4E-70 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 Gene3D G3DSA:3.30.450.20 168 280 1.8E-13 T 11-11-2016 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 Gene3D G3DSA:1.10.10.60 559 608 1.5E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 SUPERFAMILY SSF46689 520 608 3.94E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 Pfam PF13426 PAS domain 189 284 3.0E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 330 343 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 SUPERFAMILY SSF55781 25 165 5.89E-5 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 SUPERFAMILY SSF52540 306 535 1.97E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 181 288 3.0E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 588 608 8.1E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 571 588 8.1E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 SMART SM00091 179 246 2.8E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 Pfam PF01590 GAF domain 80 162 2.7E-4 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS20765 55778429507a3824741a69e9780d5c39 629 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 520 529 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS12815 d639cc866919410b72369052872d9f56 388 Gene3D G3DSA:3.90.1150.10 296 387 6.6E-36 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS12815 d639cc866919410b72369052872d9f56 388 Gene3D G3DSA:3.90.1150.10 3 49 6.6E-36 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS12815 d639cc866919410b72369052872d9f56 388 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 3 386 45.407 T 11-11-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Gferi_RS12815 d639cc866919410b72369052872d9f56 388 SUPERFAMILY SSF53383 6 387 5.15E-127 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS12815 d639cc866919410b72369052872d9f56 388 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 212 249 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS12815 d639cc866919410b72369052872d9f56 388 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 6 385 4.5E-148 T 11-11-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 Gferi_RS12815 d639cc866919410b72369052872d9f56 388 Gene3D G3DSA:3.40.640.10 50 292 1.1E-90 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS12815 d639cc866919410b72369052872d9f56 388 Pfam PF00202 Aminotransferase class-III 12 385 8.9E-122 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS13090 1c856e5987c4ae49781ebfb2568b0b11 211 SMART SM01120 31 205 2.2E-75 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS13090 1c856e5987c4ae49781ebfb2568b0b11 211 Pfam PF02734 DAK2 domain 31 204 2.0E-55 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS13090 1c856e5987c4ae49781ebfb2568b0b11 211 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 9 204 3.3E-74 T 11-11-2016 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 Gferi_RS13090 1c856e5987c4ae49781ebfb2568b0b11 211 SUPERFAMILY SSF101473 2 206 1.7E-55 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 SUPERFAMILY SSF46785 581 630 1.47E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 PRINTS PR00315 GTP-binding elongation factor signature 5 18 9.4E-7 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 PRINTS PR00315 GTP-binding elongation factor signature 110 119 9.4E-7 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 PRINTS PR00315 GTP-binding elongation factor signature 57 67 9.4E-7 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 PRINTS PR00315 GTP-binding elongation factor signature 73 84 9.4E-7 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 4 629 5.5E-113 T 11-11-2016 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Pfam PF09106 Elongation factor SelB, winged helix 447 500 3.4E-13 T 11-11-2016 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Gene3D G3DSA:2.40.30.10 295 355 2.8E-5 T 11-11-2016 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 SUPERFAMILY SSF50447 175 266 7.27E-26 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 SUPERFAMILY SSF46785 437 509 5.17E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 29 44 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Pfam PF09107 Elongation factor SelB, winged helix 585 630 5.4E-18 T 11-11-2016 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Gene3D G3DSA:1.10.10.10 437 504 6.9E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Pfam PF00009 Elongation factor Tu GTP binding domain 3 168 1.6E-33 T 11-11-2016 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Gene3D G3DSA:2.40.30.10 183 294 4.5E-32 T 11-11-2016 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Gene3D G3DSA:3.40.50.300 4 182 6.8E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Pfam PF03144 Elongation factor Tu domain 2 194 259 2.7E-9 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 134 1.4E-14 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 SUPERFAMILY SSF46785 511 571 4.62E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 SUPERFAMILY SSF52540 3 195 4.53E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 SUPERFAMILY SSF50465 265 364 1.26E-35 T 11-11-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Gene3D G3DSA:1.10.10.10 513 571 5.7E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26455 35350001aadd8af84eab4a3c876c4d09 631 Gene3D G3DSA:1.10.10.10 574 630 3.8E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22170 a15d9c8646642f4401f77506e390e3ae 119 SUPERFAMILY SSF46785 3 118 1.26E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22170 a15d9c8646642f4401f77506e390e3ae 119 PIRSF PIRSF019455 1 119 1.8E-29 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS22170 a15d9c8646642f4401f77506e390e3ae 119 Pfam PF03965 Penicillinase repressor 7 116 5.8E-22 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS22170 a15d9c8646642f4401f77506e390e3ae 119 Gene3D G3DSA:1.10.10.10 3 77 1.5E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 374 42.223 T 11-11-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Gene3D G3DSA:2.60.260.20 261 339 8.3E-24 T 11-11-2016 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 355 1.3E-141 T 11-11-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Gene3D G3DSA:2.10.230.10 142 214 1.6E-20 T 11-11-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 PRINTS PR00625 DnaJ domain signature 62 81 2.4E-31 T 11-11-2016 IPR001623 DnaJ domain Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 PRINTS PR00625 DnaJ domain signature 42 62 2.4E-31 T 11-11-2016 IPR001623 DnaJ domain Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 PRINTS PR00625 DnaJ domain signature 25 40 2.4E-31 T 11-11-2016 IPR001623 DnaJ domain Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 PRINTS PR00625 DnaJ domain signature 7 25 2.4E-31 T 11-11-2016 IPR001623 DnaJ domain Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 SUPERFAMILY SSF49493 115 156 9.94E-19 T 11-11-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 SUPERFAMILY SSF49493 219 262 9.94E-19 T 11-11-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 SUPERFAMILY SSF46565 1 109 4.71E-37 T 11-11-2016 IPR001623 DnaJ domain Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Pfam PF00684 DnaJ central domain 148 212 3.1E-13 T 11-11-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Pfam PF00226 DnaJ domain 5 67 1.1E-29 T 11-11-2016 IPR001623 DnaJ domain Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Gene3D G3DSA:1.10.287.110 1 103 9.1E-37 T 11-11-2016 IPR001623 DnaJ domain Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 SUPERFAMILY SSF57938 135 216 8.76E-19 T 11-11-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Gene3D G3DSA:2.60.260.20 215 259 4.4E-20 T 11-11-2016 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Gene3D G3DSA:2.60.260.20 106 141 4.4E-20 T 11-11-2016 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 Pfam PF01556 DnaJ C terminal domain 122 338 1.5E-43 T 11-11-2016 IPR002939 Chaperone DnaJ, C-terminal Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 SUPERFAMILY SSF49493 264 349 1.07E-25 T 11-11-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-11-2016 IPR018253 DnaJ domain, conserved site Gferi_RS02340 cea829e097f4a85d8d8af259a62b538e 377 SMART SM00271 4 62 2.6E-34 T 11-11-2016 IPR001623 DnaJ domain Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 SUPERFAMILY SSF53901 215 411 1.0E-73 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 Gene3D G3DSA:3.40.47.10 5 258 7.3E-71 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 5 247 1.4E-48 T 11-11-2016 IPR014030 Beta-ketoacyl synthase, N-terminal Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-11-2016 IPR018201 Beta-ketoacyl synthase, active site Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 SUPERFAMILY SSF53901 5 251 3.32E-67 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 5 410 1.9E-167 T 11-11-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 1.0E-36 T 11-11-2016 IPR014031 Beta-ketoacyl synthase, C-terminal Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 SMART SM00825 Beta-ketoacyl synthase 6 412 1.9E-15 T 11-11-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 PIRSF PIRSF000447 1 412 3.6E-155 T 11-11-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Gferi_RS27140 c740a7b308233048bd0d5b873d43f916 412 Gene3D G3DSA:3.40.47.10 263 411 1.3E-60 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS01445 f7747df678a3bbef3e861b5b26d588bc 124 SMART SM00530 5 60 3.1E-16 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS01445 f7747df678a3bbef3e861b5b26d588bc 124 Gene3D G3DSA:1.10.260.40 1 63 5.7E-22 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01445 f7747df678a3bbef3e861b5b26d588bc 124 Pfam PF01381 Helix-turn-helix 6 60 2.5E-17 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS01445 f7747df678a3bbef3e861b5b26d588bc 124 SUPERFAMILY SSF47413 2 67 2.52E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS18545 7af7618d5e16e03d8d2ad8cb9abe7399 336 Gene3D G3DSA:1.10.3720.10 92 162 6.8E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS18545 7af7618d5e16e03d8d2ad8cb9abe7399 336 Gene3D G3DSA:1.10.3720.10 203 327 6.8E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS18545 7af7618d5e16e03d8d2ad8cb9abe7399 336 SUPERFAMILY SSF161098 91 159 1.57E-15 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS18545 7af7618d5e16e03d8d2ad8cb9abe7399 336 SUPERFAMILY SSF161098 200 321 1.57E-15 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS18545 7af7618d5e16e03d8d2ad8cb9abe7399 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 335 5.6E-35 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 Gene3D G3DSA:1.10.1790.10 69 166 1.6E-26 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 Gene3D G3DSA:2.30.24.10 4 52 5.9E-14 T 11-11-2016 IPR004341 CAT RNA-binding domain GO:0003723 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 SUPERFAMILY SSF63520 175 272 3.27E-21 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 SUPERFAMILY SSF63520 64 170 9.81E-28 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 SUPERFAMILY SSF50151 4 52 1.44E-10 T 11-11-2016 IPR004341 CAT RNA-binding domain GO:0003723 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 Gene3D G3DSA:1.10.1790.10 173 273 1.3E-22 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 Pfam PF00874 PRD domain 79 164 3.1E-22 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 Pfam PF00874 PRD domain 184 272 1.2E-18 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 SMART SM01061 4 65 3.6E-11 T 11-11-2016 IPR004341 CAT RNA-binding domain GO:0003723 Gferi_RS25005 b36e926ab44885be17537ef0612d9b43 278 Pfam PF03123 CAT RNA binding domain 4 52 8.0E-13 T 11-11-2016 IPR004341 CAT RNA-binding domain GO:0003723 Gferi_RS00740 0c5c4bd98eb91fb11e7708aca4981439 155 SUPERFAMILY SSF74942 86 152 1.18E-15 T 11-11-2016 IPR028998 Ribosome maturation factor RimP, C-terminal Gferi_RS00740 0c5c4bd98eb91fb11e7708aca4981439 155 Pfam PF02576 Putative ribosome maturation factor RimP 16 150 3.7E-47 T 11-11-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 Gferi_RS00740 0c5c4bd98eb91fb11e7708aca4981439 155 Gene3D G3DSA:3.30.300.70 7 82 5.9E-31 T 11-11-2016 IPR028989 Ribosome maturation factor RimP, N-terminal Gferi_RS00740 0c5c4bd98eb91fb11e7708aca4981439 155 SUPERFAMILY SSF75420 6 85 4.45E-27 T 11-11-2016 IPR028989 Ribosome maturation factor RimP, N-terminal Gferi_RS00740 0c5c4bd98eb91fb11e7708aca4981439 155 Gene3D G3DSA:2.30.30.180 89 152 7.9E-20 T 11-11-2016 IPR028998 Ribosome maturation factor RimP, C-terminal Gferi_RS00740 0c5c4bd98eb91fb11e7708aca4981439 155 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 8 154 24.535 T 11-11-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 Gferi_RS08435 e94042ced731c58b489e3daa2c8f3a07 298 PIRSF PIRSF015582 2 298 4.0E-85 T 11-11-2016 IPR011206 Citrate lyase beta subunit-like Gferi_RS08435 e94042ced731c58b489e3daa2c8f3a07 298 Gene3D G3DSA:3.20.20.60 5 240 7.7E-75 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS08435 e94042ced731c58b489e3daa2c8f3a07 298 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 10 229 3.0E-77 T 11-11-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Gferi_RS08435 e94042ced731c58b489e3daa2c8f3a07 298 SUPERFAMILY SSF51621 7 240 9.03E-67 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS08435 e94042ced731c58b489e3daa2c8f3a07 298 TIGRFAM TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit 7 293 4.4E-138 T 11-11-2016 IPR006475 Citrate lyase, beta subunit, bacteria GO:0005737|GO:0006084|GO:0008816|GO:0009346 KEGG: 00720+4.1.3.34|MetaCyc: PWY-5392|MetaCyc: PWY-6038 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 SUPERFAMILY SSF140990 413 604 1.44E-74 T 11-11-2016 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 SUPERFAMILY SSF52540 156 402 2.76E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 199 330 4.2E-44 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 SMART SM00382 195 334 2.9E-25 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 Pfam PF01434 Peptidase family M41 393 600 6.7E-82 T 11-11-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 Pfam PF06480 FtsH Extracellular 10 78 1.5E-7 T 11-11-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 112 601 2.5E-238 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 608 37.998 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 Gene3D G3DSA:1.10.8.60 342 406 1.9E-25 T 11-11-2016 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 ProSitePatterns PS00674 AAA-protein family signature. 302 320 - T 11-11-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Gferi_RS16845 1959fa1467007e1a9b49a49a7b18978b 611 Gene3D G3DSA:3.40.50.300 156 341 6.4E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22180 5acd06c6b2017bdcd66d5f487b18d89c 212 Gene3D G3DSA:2.40.100.10 36 209 4.3E-55 T 11-11-2016 IPR029000 Cyclophilin-like domain Gferi_RS22180 5acd06c6b2017bdcd66d5f487b18d89c 212 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 81 98 - T 11-11-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Gferi_RS22180 5acd06c6b2017bdcd66d5f487b18d89c 212 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 46 205 4.9E-48 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS22180 5acd06c6b2017bdcd66d5f487b18d89c 212 SUPERFAMILY SSF50891 45 209 1.61E-50 T 11-11-2016 IPR029000 Cyclophilin-like domain Gferi_RS22180 5acd06c6b2017bdcd66d5f487b18d89c 212 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 75 8.6E-18 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS22180 5acd06c6b2017bdcd66d5f487b18d89c 212 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 175 8.6E-18 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS22180 5acd06c6b2017bdcd66d5f487b18d89c 212 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 98 8.6E-18 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS22180 5acd06c6b2017bdcd66d5f487b18d89c 212 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 159 8.6E-18 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS19910 a4a909964ca0fb6354f4cdeccaa2b1c0 177 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 25 167 2.6E-52 T 11-11-2016 Gferi_RS19910 a4a909964ca0fb6354f4cdeccaa2b1c0 177 SUPERFAMILY SSF52833 21 170 5.14E-51 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS19910 a4a909964ca0fb6354f4cdeccaa2b1c0 177 Gene3D G3DSA:3.40.30.10 88 167 1.9E-13 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS19910 a4a909964ca0fb6354f4cdeccaa2b1c0 177 PIRSF PIRSF000216 6 177 2.5E-55 T 11-11-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS24755 c3fbb2f42f2cc900c82d0965b3612b86 69 SUPERFAMILY SSF47413 6 68 3.75E-19 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS24755 c3fbb2f42f2cc900c82d0965b3612b86 69 SMART SM00530 6 61 7.8E-17 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS24755 c3fbb2f42f2cc900c82d0965b3612b86 69 Gene3D G3DSA:1.10.260.40 6 66 2.1E-23 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS24755 c3fbb2f42f2cc900c82d0965b3612b86 69 Pfam PF01381 Helix-turn-helix 7 60 3.7E-18 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS08220 0aeec858878407f5531133f2f782244d 373 SUPERFAMILY SSF56524 27 138 1.96E-7 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08220 0aeec858878407f5531133f2f782244d 373 Pfam PF00395 S-layer homology domain 320 364 2.2E-9 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS08220 0aeec858878407f5531133f2f782244d 373 Pfam PF00395 S-layer homology domain 251 293 3.4E-18 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS08220 0aeec858878407f5531133f2f782244d 373 Pfam PF00395 S-layer homology domain 189 232 2.1E-13 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS08220 0aeec858878407f5531133f2f782244d 373 Gene3D G3DSA:3.90.420.10 26 137 4.5E-6 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08220 0aeec858878407f5531133f2f782244d 373 Pfam PF00174 Oxidoreductase molybdopterin binding domain 27 138 2.0E-5 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 Pfam PF01170 Putative RNA methylase family UPF0020 163 367 1.3E-61 T 11-11-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 Pfam PF02926 THUMP domain 15 155 7.0E-19 T 11-11-2016 IPR004114 THUMP domain GO:0003723 Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 SMART SM00981 58 155 9.6E-14 T 11-11-2016 IPR004114 THUMP domain GO:0003723 Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 300 306 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 Gene3D G3DSA:3.40.50.150 252 373 1.4E-34 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 Gene3D G3DSA:3.40.50.150 145 215 1.4E-34 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 196 207 - T 11-11-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 SUPERFAMILY SSF53335 255 365 1.42E-41 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15710 4b61bd1d1812fae9e60dc7c3d8ac633f 383 SUPERFAMILY SSF53335 144 218 1.42E-41 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS07215 2f4b6860beb8bf3df454dfe94c1195ad 109 SMART SM00746 65 103 0.0029 T 11-11-2016 IPR011017 TRASH domain Gferi_RS00270 cec3da1fead95f2a6af75b9927aebfc6 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 12 65 9.0E-20 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Gferi_RS00270 cec3da1fead95f2a6af75b9927aebfc6 80 SUPERFAMILY SSF116842 6 73 1.96E-18 T 11-11-2016 Gferi_RS00270 cec3da1fead95f2a6af75b9927aebfc6 80 Gene3D G3DSA:1.10.287.1040 9 72 2.0E-20 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Gferi_RS00270 cec3da1fead95f2a6af75b9927aebfc6 80 Pfam PF02609 Exonuclease VII small subunit 13 63 1.6E-18 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Gferi_RS00270 cec3da1fead95f2a6af75b9927aebfc6 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 12 51 1.0E-4 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Gferi_RS00270 cec3da1fead95f2a6af75b9927aebfc6 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 12 72 13.955 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 SUPERFAMILY SSF50249 539 641 3.43E-27 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 279 32.432 T 11-11-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Gene3D G3DSA:2.40.50.140 289 373 1.5E-18 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 SUPERFAMILY SSF50249 297 396 1.42E-21 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 SUPERFAMILY SSF50249 374 459 2.0E-13 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Gene3D G3DSA:2.40.50.140 476 552 1.0E-30 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 277 2.7E-94 T 11-11-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Pfam PF02401 LytB protein 3 275 1.1E-95 T 11-11-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Gene3D G3DSA:2.40.50.140 553 633 2.9E-30 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 496 517 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 439 459 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 574 593 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 392 408 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 613 631 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 320 334 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 302 320 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 368 387 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 PRINTS PR00681 Ribosomal protein S1 signature 410 427 1.1E-46 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Pfam PF00575 S1 RNA binding domain 557 630 9.0E-24 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Pfam PF00575 S1 RNA binding domain 299 371 4.4E-14 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Pfam PF00575 S1 RNA binding domain 472 544 9.0E-24 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Pfam PF00575 S1 RNA binding domain 388 455 9.5E-7 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 SMART SM00316 387 455 1.9E-7 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 SMART SM00316 474 544 1.8E-28 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 SMART SM00316 300 371 3.9E-16 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 SMART SM00316 559 630 1.3E-28 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 SUPERFAMILY SSF50249 474 561 6.49E-27 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00020 10b6a887ba7a08fb23701b5f555c99c5 658 Gene3D G3DSA:2.40.50.140 379 456 1.5E-14 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS08300 80d78de5ae5bd08f17cb346308e5cf69 846 Pfam PF12704 MacB-like periplasmic core domain 19 199 2.3E-8 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS08300 80d78de5ae5bd08f17cb346308e5cf69 846 Pfam PF02687 FtsX-like permease family 274 397 5.4E-18 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS08300 80d78de5ae5bd08f17cb346308e5cf69 846 Pfam PF02687 FtsX-like permease family 719 836 1.2E-18 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS01615 60526935a04caf4bc03e0a4cf61c1f63 299 Pfam PF00753 Metallo-beta-lactamase superfamily 16 207 5.8E-25 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS01615 60526935a04caf4bc03e0a4cf61c1f63 299 SUPERFAMILY SSF56281 1 250 6.81E-42 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS01615 60526935a04caf4bc03e0a4cf61c1f63 299 Gene3D G3DSA:3.60.15.10 2 230 3.5E-36 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS01615 60526935a04caf4bc03e0a4cf61c1f63 299 SMART SM00849 16 207 8.9E-24 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS09025 2dbcd4b4560a11629d1113f4e9ccd76f 194 Pfam PF08359 YsiA-like protein, C-terminal region 63 162 8.2E-6 T 11-11-2016 IPR013570 Transcription regulator YsiA, C-terminal Gferi_RS09025 2dbcd4b4560a11629d1113f4e9ccd76f 194 SUPERFAMILY SSF48498 82 193 4.82E-12 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS09025 2dbcd4b4560a11629d1113f4e9ccd76f 194 Gene3D G3DSA:1.10.357.10 58 193 1.1E-17 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS09025 2dbcd4b4560a11629d1113f4e9ccd76f 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 1.3E-17 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS09025 2dbcd4b4560a11629d1113f4e9ccd76f 194 SUPERFAMILY SSF46689 4 72 7.18E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09025 2dbcd4b4560a11629d1113f4e9ccd76f 194 Gene3D G3DSA:1.10.10.60 4 57 3.6E-22 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09025 2dbcd4b4560a11629d1113f4e9ccd76f 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.1E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS09025 2dbcd4b4560a11629d1113f4e9ccd76f 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.1E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 SUPERFAMILY SSF82866 888 1105 1.44E-46 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 SUPERFAMILY SSF82866 318 515 5.36E-42 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 Gene3D G3DSA:3.30.2090.10 797 883 1.7E-14 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 Gene3D G3DSA:3.30.2090.10 200 282 5.2E-17 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 Gene3D G3DSA:1.20.1640.10 311 521 4.0E-50 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 SUPERFAMILY SSF82693 62 153 1.2E-22 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 Gene3D G3DSA:3.30.70.1430 62 161 2.5E-27 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 SUPERFAMILY SSF82714 201 282 4.05E-15 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 Gene3D G3DSA:3.30.70.1430 646 745 1.3E-10 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 SUPERFAMILY SSF82693 290 350 4.39E-7 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 SUPERFAMILY SSF82693 158 199 4.39E-7 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 Gene3D G3DSA:1.10.3850.10 890 1101 7.8E-60 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 SUPERFAMILY SSF82714 798 883 2.88E-13 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 PRINTS PR00702 Acriflavin resistance protein family signature 411 435 2.5E-31 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 PRINTS PR00702 Acriflavin resistance protein family signature 58 76 2.5E-31 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 PRINTS PR00702 Acriflavin resistance protein family signature 489 512 2.5E-31 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 PRINTS PR00702 Acriflavin resistance protein family signature 357 380 2.5E-31 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.5E-31 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 SUPERFAMILY SSF82693 645 747 6.28E-12 T 11-11-2016 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 Pfam PF00873 AcrB/AcrD/AcrF family 24 525 1.0E-114 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS13380 3ae591c7971f130595f6878e0a59c28c 1131 Pfam PF00873 AcrB/AcrD/AcrF family 590 1099 1.9E-88 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS17490 888f5346bcbac15148d54b528c05561f 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 146 23.045 T 11-11-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 Gferi_RS17490 888f5346bcbac15148d54b528c05561f 146 Gene3D G3DSA:3.100.10.10 32 146 7.1E-42 T 11-11-2016 Gferi_RS17490 888f5346bcbac15148d54b528c05561f 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 144 2.1E-40 T 11-11-2016 IPR021131 Ribosomal protein L18e/L15P Gferi_RS17490 888f5346bcbac15148d54b528c05561f 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 110 140 - T 11-11-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17490 888f5346bcbac15148d54b528c05561f 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 6.8E-55 T 11-11-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17490 888f5346bcbac15148d54b528c05561f 146 SUPERFAMILY SSF52080 4 143 2.22E-51 T 11-11-2016 IPR021131 Ribosomal protein L18e/L15P Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 Gene3D G3DSA:3.40.50.880 150 354 2.4E-69 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 SMART SM01097 1 131 2.3E-77 T 11-11-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 SUPERFAMILY SSF52317 148 353 4.77E-61 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 SUPERFAMILY SSF52021 1 144 1.01E-51 T 11-11-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 4 130 1.3E-49 T 11-11-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00097 Anthranilate synthase component II signature 214 223 6.1E-7 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00097 Anthranilate synthase component II signature 327 340 6.1E-7 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00097 Anthranilate synthase component II signature 241 252 6.1E-7 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 283 294 1.2E-35 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 241 257 1.2E-35 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 172 186 1.2E-35 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 211 225 1.2E-35 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 258 275 1.2E-35 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 Gene3D G3DSA:3.50.30.20 2 147 1.2E-55 T 11-11-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 353 2.0E-150 T 11-11-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 356 47.938 T 11-11-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00096 Glutamine amidotransferase superfamily signature 327 340 6.7E-12 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00096 Glutamine amidotransferase superfamily signature 214 223 6.7E-12 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 PRINTS PR00096 Glutamine amidotransferase superfamily signature 241 252 6.7E-12 T 11-11-2016 Gferi_RS12805 2df1ee7629c8d141f57047f9a6bf3113 359 Pfam PF00117 Glutamine amidotransferase class-I 174 350 6.5E-51 T 11-11-2016 IPR017926 Glutamine amidotransferase Gferi_RS05235 7ad42c751251bfd19402530d300f9cf9 112 SUPERFAMILY SSF51182 5 112 1.93E-26 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS05235 7ad42c751251bfd19402530d300f9cf9 112 Gene3D G3DSA:2.60.120.10 4 111 1.9E-37 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS05235 7ad42c751251bfd19402530d300f9cf9 112 Pfam PF07883 Cupin domain 42 109 1.1E-11 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS04620 9a38d62bb6bc0a9f0d90c36eb13db61c 189 SUPERFAMILY SSF110391 14 188 1.83E-58 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS04620 9a38d62bb6bc0a9f0d90c36eb13db61c 189 Gene3D G3DSA:3.20.20.400 4 188 1.8E-69 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS04620 9a38d62bb6bc0a9f0d90c36eb13db61c 189 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 15 187 5.4E-66 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS04620 9a38d62bb6bc0a9f0d90c36eb13db61c 189 PIRSF PIRSF016897 4 189 1.4E-65 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS09585 a63adde9e6e611624ba727e936df1e65 424 Pfam PF03600 Citrate transporter 249 419 2.9E-8 T 11-11-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Gferi_RS09585 a63adde9e6e611624ba727e936df1e65 424 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 3 145 4.1E-29 T 11-11-2016 IPR009827 Dicarboxylate carrier MatC N-terminal Gferi_RS11170 eda64265d05c4f5c3877c5b674a393d4 66 PRINTS PR01249 Ribosomal protein L31 signature 45 63 2.8E-22 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS11170 eda64265d05c4f5c3877c5b674a393d4 66 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.8E-22 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS11170 eda64265d05c4f5c3877c5b674a393d4 66 PRINTS PR01249 Ribosomal protein L31 signature 30 45 2.8E-22 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS11170 eda64265d05c4f5c3877c5b674a393d4 66 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 8.7E-32 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS11170 eda64265d05c4f5c3877c5b674a393d4 66 ProSitePatterns PS01143 Ribosomal protein L31 signature. 34 55 - T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS11170 eda64265d05c4f5c3877c5b674a393d4 66 Pfam PF01197 Ribosomal protein L31 1 64 8.2E-33 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS11170 eda64265d05c4f5c3877c5b674a393d4 66 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 66 28.326 T 11-11-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS11170 eda64265d05c4f5c3877c5b674a393d4 66 SUPERFAMILY SSF143800 1 65 1.57E-26 T 11-11-2016 Gferi_RS23685 47414d7aa65d5ed5fa27067628cea697 378 Pfam PF10926 Protein of unknown function (DUF2800) 4 361 3.7E-151 T 11-11-2016 IPR021229 Protein of unknown function DUF2800 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 PIRSF PIRSF006092 1 158 4.4E-50 T 11-11-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 SUPERFAMILY SSF54534 85 157 6.28E-21 T 11-11-2016 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 8 157 4.8E-55 T 11-11-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 SUPERFAMILY SSF46557 4 78 1.83E-23 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 85 157 6.5E-28 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 Gene3D G3DSA:1.10.287.180 4 77 1.5E-27 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 Pfam PF03449 Transcription elongation factor, N-terminal 7 76 4.0E-27 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 4 157 30.077 T 11-11-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 122 138 - T 11-11-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Gferi_RS16940 1282be8563a2df6b388bc46b2c2006bf 158 Gene3D G3DSA:3.10.50.30 78 157 8.4E-31 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Gferi_RS13680 7126aedeaf6afed9cddb290bc84f46a9 148 SUPERFAMILY SSF55653 57 148 2.35E-26 T 11-11-2016 IPR020069 Ribosomal protein L9, C-terminal Gferi_RS13680 7126aedeaf6afed9cddb290bc84f46a9 148 Gene3D G3DSA:3.10.430.100 60 148 1.5E-29 T 11-11-2016 IPR020069 Ribosomal protein L9, C-terminal Gferi_RS13680 7126aedeaf6afed9cddb290bc84f46a9 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 46 3.3E-22 T 11-11-2016 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13680 7126aedeaf6afed9cddb290bc84f46a9 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 27.09 T 11-11-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS13680 7126aedeaf6afed9cddb290bc84f46a9 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 148 5.5E-42 T 11-11-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS13680 7126aedeaf6afed9cddb290bc84f46a9 148 Gene3D G3DSA:3.40.5.10 1 52 1.0E-22 T 11-11-2016 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13680 7126aedeaf6afed9cddb290bc84f46a9 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 147 4.0E-27 T 11-11-2016 IPR020069 Ribosomal protein L9, C-terminal Gferi_RS13680 7126aedeaf6afed9cddb290bc84f46a9 148 SUPERFAMILY SSF55658 1 57 1.19E-17 T 11-11-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Gferi_RS07815 ddf9f7d729ac71648228d040a942bdd4 266 Pfam PF00809 Pterin binding enzyme 6 229 8.8E-28 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS07815 ddf9f7d729ac71648228d040a942bdd4 266 Gene3D G3DSA:3.20.20.20 1 261 1.2E-82 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS07815 ddf9f7d729ac71648228d040a942bdd4 266 SUPERFAMILY SSF51717 1 261 6.93E-75 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS27215 6d6d7fdca69b4efc991368b49649b0d7 81 Gene3D G3DSA:2.30.30.100 1 75 8.0E-33 T 11-11-2016 Gferi_RS27215 6d6d7fdca69b4efc991368b49649b0d7 81 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 65 28.985 T 11-11-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Gferi_RS27215 6d6d7fdca69b4efc991368b49649b0d7 81 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 65 1.7E-31 T 11-11-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 Gferi_RS27215 6d6d7fdca69b4efc991368b49649b0d7 81 SUPERFAMILY SSF50182 6 65 4.8E-24 T 11-11-2016 IPR010920 LSM domain Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Gene3D G3DSA:3.30.70.1430 40 138 2.1E-24 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 SUPERFAMILY SSF82693 563 662 5.75E-11 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Gene3D G3DSA:1.10.3850.10 807 1023 9.7E-65 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 SUPERFAMILY SSF82693 40 134 1.31E-23 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Gene3D G3DSA:3.30.70.1430 564 662 6.1E-12 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 SUPERFAMILY SSF82714 183 263 6.41E-13 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Pfam PF00873 AcrB/AcrD/AcrF family 4 1021 4.9E-249 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 SUPERFAMILY SSF82693 267 310 4.19E-16 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 SUPERFAMILY SSF82693 137 181 4.19E-16 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Gene3D G3DSA:3.30.2090.10 182 264 3.7E-16 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Gene3D G3DSA:3.30.2090.10 717 798 2.6E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Gene3D G3DSA:1.20.1640.10 297 495 8.4E-47 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Gene3D G3DSA:3.30.70.1320 139 178 2.8E-14 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 Gene3D G3DSA:3.30.70.1320 269 296 2.8E-14 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 SUPERFAMILY SSF82866 290 486 1.57E-37 T 11-11-2016 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 SUPERFAMILY SSF82714 717 799 1.31E-13 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 3.0E-44 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.0E-44 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 3.0E-44 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.0E-44 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 3.0E-44 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 3.0E-44 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 3.0E-44 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 3.0E-44 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS24940 82cf4a83ba4cf23b6621e33e6cb78e0b 1048 SUPERFAMILY SSF82866 804 1024 2.22E-51 T 11-11-2016 Gferi_RS02430 448c1aaca167e9df70ff58105f186b8e 224 SUPERFAMILY SSF55124 16 74 1.8E-16 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS02430 448c1aaca167e9df70ff58105f186b8e 224 Gene3D G3DSA:3.90.480.10 24 85 5.4E-10 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS02430 448c1aaca167e9df70ff58105f186b8e 224 PIRSF PIRSF037487 2 218 8.5E-66 T 11-11-2016 IPR017220 Sulphite reductase, assimilatory Gferi_RS02430 448c1aaca167e9df70ff58105f186b8e 224 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 107 222 4.4E-17 T 11-11-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS02430 448c1aaca167e9df70ff58105f186b8e 224 Gene3D G3DSA:3.30.413.10 86 217 3.1E-28 T 11-11-2016 Gferi_RS02430 448c1aaca167e9df70ff58105f186b8e 224 SUPERFAMILY SSF56014 86 217 6.8E-30 T 11-11-2016 Gferi_RS02430 448c1aaca167e9df70ff58105f186b8e 224 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 13 74 4.1E-17 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS11765 8f57eb7c3206bdcb7f5142c45df23469 394 SUPERFAMILY SSF55718 288 394 6.28E-18 T 11-11-2016 IPR003033 SCP2 sterol-binding domain Gferi_RS11765 8f57eb7c3206bdcb7f5142c45df23469 394 Gene3D G3DSA:3.30.1050.10 275 386 6.3E-21 T 11-11-2016 IPR003033 SCP2 sterol-binding domain Gferi_RS11765 8f57eb7c3206bdcb7f5142c45df23469 394 SUPERFAMILY SSF55729 1 287 1.62E-62 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11765 8f57eb7c3206bdcb7f5142c45df23469 394 Pfam PF13530 Sterol carrier protein domain 173 390 8.2E-39 T 11-11-2016 IPR025559 Enhanced intracellular survival protein domain Gferi_RS11765 8f57eb7c3206bdcb7f5142c45df23469 394 Gene3D G3DSA:3.40.630.30 124 267 2.4E-33 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11765 8f57eb7c3206bdcb7f5142c45df23469 394 Gene3D G3DSA:3.40.630.30 1 123 8.4E-31 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11765 8f57eb7c3206bdcb7f5142c45df23469 394 Pfam PF13527 Acetyltransferase (GNAT) domain 3 125 1.3E-28 T 11-11-2016 Gferi_RS19440 1ca387687cba8ffc5c473d53c77c1923 139 PIRSF PIRSF004966 3 137 5.2E-36 T 11-11-2016 IPR012016 Uncharacterised protein family UPF0107 Gferi_RS19440 1ca387687cba8ffc5c473d53c77c1923 139 Pfam PF01989 Protein of unknown function DUF126 27 106 1.5E-28 T 11-11-2016 IPR002840 Domain of unknown function DUF126 Gferi_RS19440 1ca387687cba8ffc5c473d53c77c1923 139 SUPERFAMILY SSF52016 5 135 5.65E-39 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS19440 1ca387687cba8ffc5c473d53c77c1923 139 Gene3D G3DSA:3.50.30.10 4 138 3.3E-50 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS13480 c2b7079226ae6f1b777a7d471f4d7be6 287 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 12 283 6.2E-81 T 11-11-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Gferi_RS13480 c2b7079226ae6f1b777a7d471f4d7be6 287 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 14 96 3.4E-30 T 11-11-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Gferi_RS13480 c2b7079226ae6f1b777a7d471f4d7be6 287 SUPERFAMILY SSF51735 109 284 7.46E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS13480 c2b7079226ae6f1b777a7d471f4d7be6 287 Gene3D G3DSA:3.40.50.720 114 284 4.0E-52 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS13480 c2b7079226ae6f1b777a7d471f4d7be6 287 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 9 285 36.217 T 11-11-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 Gferi_RS13480 c2b7079226ae6f1b777a7d471f4d7be6 287 SUPERFAMILY SSF53223 3 108 4.83E-36 T 11-11-2016 Gferi_RS13480 c2b7079226ae6f1b777a7d471f4d7be6 287 Gene3D G3DSA:3.40.192.10 5 113 5.7E-43 T 11-11-2016 Gferi_RS13480 c2b7079226ae6f1b777a7d471f4d7be6 287 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 123 203 4.7E-10 T 11-11-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Gferi_RS08270 3ee7d541252d3df4f438c705b2da58ef 124 SUPERFAMILY SSF46785 5 123 1.39E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08270 3ee7d541252d3df4f438c705b2da58ef 124 PIRSF PIRSF019455 1 124 3.0E-38 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS08270 3ee7d541252d3df4f438c705b2da58ef 124 Gene3D G3DSA:1.10.10.10 1 81 2.3E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08270 3ee7d541252d3df4f438c705b2da58ef 124 Pfam PF03965 Penicillinase repressor 7 120 1.1E-35 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS02010 fa7f47eb1017f0d43f554b5f488a60ba 429 Gene3D G3DSA:3.30.830.10 250 414 6.9E-28 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 Gferi_RS02010 fa7f47eb1017f0d43f554b5f488a60ba 429 Gene3D G3DSA:3.30.830.10 7 232 2.9E-73 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 Gferi_RS02010 fa7f47eb1017f0d43f554b5f488a60ba 429 SUPERFAMILY SSF63411 248 416 1.04E-30 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS02010 fa7f47eb1017f0d43f554b5f488a60ba 429 SUPERFAMILY SSF63411 7 231 1.01E-20 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS02010 fa7f47eb1017f0d43f554b5f488a60ba 429 Pfam PF05193 Peptidase M16 inactive domain 185 359 2.4E-24 T 11-11-2016 IPR007863 Peptidase M16, C-terminal Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Gene3D G3DSA:3.40.50.970 3 258 1.6E-115 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 SUPERFAMILY SSF52922 259 414 9.58E-49 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 959 1071 4.9E-12 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 5 1173 0.0 T 11-11-2016 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Pfam PF13484 4Fe-4S double cluster binding domain 688 757 7.2E-11 T 11-11-2016 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 689 700 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 269 374 1.0E-14 T 11-11-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Gene3D G3DSA:3.40.920.10 416 622 6.9E-90 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 SUPERFAMILY SSF52518 3 258 4.9E-80 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Gene3D G3DSA:3.40.50.970 789 1173 3.1E-152 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 SUPERFAMILY SSF53323 415 668 1.26E-88 T 11-11-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Gene3D G3DSA:3.40.50.920 259 414 1.2E-63 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Gene3D G3DSA:4.10.780.10 629 668 3.1E-18 T 11-11-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 SUPERFAMILY SSF54862 665 831 2.79E-20 T 11-11-2016 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Pfam PF10371 Domain of unknown function 627 678 1.4E-24 T 11-11-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Gene3D G3DSA:3.30.70.20 672 779 2.5E-20 T 11-11-2016 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 21 247 2.3E-82 T 11-11-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 SUPERFAMILY SSF52518 787 1172 4.24E-134 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 SMART SM00890 622 679 9.7E-32 T 11-11-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 425 608 5.3E-33 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS25530 c31aa3d63d0cf1a21b83396556077731 1173 PIRSF PIRSF000159 1 1173 0.0 T 11-11-2016 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Gferi_RS07725 8be9cdb4c9006d0a68bd12abcfd45473 429 PIRSF PIRSF000505 1 428 1.9E-123 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS07725 8be9cdb4c9006d0a68bd12abcfd45473 429 SUPERFAMILY SSF55205 3 424 5.89E-108 T 11-11-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Gferi_RS07725 8be9cdb4c9006d0a68bd12abcfd45473 429 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 8 424 29.711 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS07725 8be9cdb4c9006d0a68bd12abcfd45473 429 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 12 423 1.4E-119 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS07725 8be9cdb4c9006d0a68bd12abcfd45473 429 Gene3D G3DSA:3.65.10.10 20 231 7.6E-42 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS07725 8be9cdb4c9006d0a68bd12abcfd45473 429 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 417 1.2E-103 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS07725 8be9cdb4c9006d0a68bd12abcfd45473 429 ProSitePatterns PS00885 EPSP synthase signature 2. 335 353 - T 11-11-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS07725 8be9cdb4c9006d0a68bd12abcfd45473 429 Gene3D G3DSA:3.65.10.10 232 423 6.7E-59 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS17515 e0a96ea5cf69322e403076036d475252 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 1.1E-36 T 11-11-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Gferi_RS17515 e0a96ea5cf69322e403076036d475252 72 Gene3D G3DSA:2.40.50.140 1 71 2.4E-38 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17515 e0a96ea5cf69322e403076036d475252 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.151 T 11-11-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Gferi_RS17515 e0a96ea5cf69322e403076036d475252 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 5.2E-28 T 11-11-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 Gferi_RS17515 e0a96ea5cf69322e403076036d475252 72 SUPERFAMILY SSF50249 1 70 1.42E-27 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17515 e0a96ea5cf69322e403076036d475252 72 SMART SM00316 4 72 1.5E-4 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS01185 53b16dfab3558358a72720aaae79410a 982 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 185 196 - T 11-11-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site Gferi_RS01185 53b16dfab3558358a72720aaae79410a 982 Gene3D G3DSA:3.40.50.200 110 462 4.2E-78 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS01185 53b16dfab3558358a72720aaae79410a 982 PRINTS PR00723 Subtilisin serine protease family (S8) signature 245 258 3.8E-16 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS01185 53b16dfab3558358a72720aaae79410a 982 PRINTS PR00723 Subtilisin serine protease family (S8) signature 402 418 3.8E-16 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS01185 53b16dfab3558358a72720aaae79410a 982 PRINTS PR00723 Subtilisin serine protease family (S8) signature 180 199 3.8E-16 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS01185 53b16dfab3558358a72720aaae79410a 982 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 249 259 - T 11-11-2016 IPR022398 Peptidase S8, subtilisin, His-active site Gferi_RS01185 53b16dfab3558358a72720aaae79410a 982 Pfam PF00082 Subtilase family 180 450 1.1E-41 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS01185 53b16dfab3558358a72720aaae79410a 982 SUPERFAMILY SSF52743 170 462 5.5E-66 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS02455 a70753db807765530c54672d38eddc12 717 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 88 104 3.4E-16 T 11-11-2016 Gferi_RS02455 a70753db807765530c54672d38eddc12 717 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 253 265 3.4E-16 T 11-11-2016 Gferi_RS02455 a70753db807765530c54672d38eddc12 717 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 290 314 3.4E-16 T 11-11-2016 Gferi_RS02455 a70753db807765530c54672d38eddc12 717 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 149 163 3.4E-16 T 11-11-2016 Gferi_RS02455 a70753db807765530c54672d38eddc12 717 Gene3D G3DSA:3.40.50.150 90 107 1.5E-42 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS02455 a70753db807765530c54672d38eddc12 717 Gene3D G3DSA:3.40.50.150 145 389 1.5E-42 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS02455 a70753db807765530c54672d38eddc12 717 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 256 262 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS02455 a70753db807765530c54672d38eddc12 717 SUPERFAMILY SSF53335 60 107 2.0E-49 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS02455 a70753db807765530c54672d38eddc12 717 SUPERFAMILY SSF53335 145 382 2.0E-49 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS02455 a70753db807765530c54672d38eddc12 717 Pfam PF12950 TaqI-like C-terminal specificity domain 503 658 8.5E-11 T 11-11-2016 IPR025931 TaqI-like C-terminal specificity domain Gferi_RS02455 a70753db807765530c54672d38eddc12 717 Pfam PF02384 N-6 DNA Methylase 70 385 5.8E-13 T 11-11-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 282 33.259 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 281 5.8E-59 T 11-11-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 SUPERFAMILY SSF51735 121 279 5.53E-42 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 Gene3D G3DSA:3.40.50.720 139 263 9.4E-50 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 119 1.5E-32 T 11-11-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 238 254 1.8E-60 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 1.8E-60 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 1.8E-60 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 73 100 1.8E-60 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 1.8E-60 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 108 129 1.8E-60 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 32 54 1.8E-60 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 Gene3D G3DSA:3.40.192.10 6 138 3.3E-37 T 11-11-2016 Gferi_RS06355 5103d4261209fe3f95fd692de9b6d471 284 SUPERFAMILY SSF53223 2 120 3.93E-29 T 11-11-2016 Gferi_RS13805 8845a1b7188d323da81855db08d67e48 55 TIGRFAM TIGR04129 CxxH_BA5709: CxxH/CxxC protein, BA_5709 family 2 54 7.0E-17 T 11-11-2016 IPR025626 YyzF-like protein Gferi_RS13805 8845a1b7188d323da81855db08d67e48 55 Pfam PF14116 YyzF-like protein 4 55 1.4E-18 T 11-11-2016 IPR025626 YyzF-like protein Gferi_RS04815 bdd484a0cdf5c3a226540a0662f5f589 233 Pfam PF01553 Acyltransferase 36 160 9.4E-21 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Gferi_RS04815 bdd484a0cdf5c3a226540a0662f5f589 233 SMART SM00563 51 164 1.9E-25 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Gferi_RS04815 bdd484a0cdf5c3a226540a0662f5f589 233 Gene3D G3DSA:3.40.1130.10 16 223 2.6E-24 T 11-11-2016 Gferi_RS04815 bdd484a0cdf5c3a226540a0662f5f589 233 SUPERFAMILY SSF69593 20 233 2.35E-40 T 11-11-2016 Gferi_RS08175 3e495c27f10a21b403610f5ec2fcd64e 215 Pfam PF00005 ABC transporter 21 170 4.3E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS08175 3e495c27f10a21b403610f5ec2fcd64e 215 SUPERFAMILY SSF52540 5 215 6.23E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08175 3e495c27f10a21b403610f5ec2fcd64e 215 Gene3D G3DSA:3.40.50.300 2 214 3.2E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08175 3e495c27f10a21b403610f5ec2fcd64e 215 SMART SM00382 30 214 2.3E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08175 3e495c27f10a21b403610f5ec2fcd64e 215 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS00860 eb05cf92be501b5aedf35eccf850a0a9 223 Gene3D G3DSA:2.40.10.220 106 220 1.9E-13 T 11-11-2016 Gferi_RS00860 eb05cf92be501b5aedf35eccf850a0a9 223 Pfam PF07238 PilZ domain 105 211 8.7E-14 T 11-11-2016 IPR009875 PilZ domain GO:0035438 Gferi_RS00860 eb05cf92be501b5aedf35eccf850a0a9 223 Pfam PF12945 Flagellar protein YcgR 10 95 2.7E-11 T 11-11-2016 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal Gferi_RS10185 adcc3cecd4b8a3f2922a254856a8a736 274 Pfam PF05853 beta-keto acid cleavage enzyme 3 271 1.2E-105 T 11-11-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24 Gferi_RS10185 adcc3cecd4b8a3f2922a254856a8a736 274 Gene3D G3DSA:3.20.20.70 1 272 5.2E-106 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 SUPERFAMILY SSF53448 1 235 4.59E-75 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 SUPERFAMILY SSF55957 731 816 3.66E-12 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 382 511 2.2E-18 T 11-11-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Gene3D G3DSA:2.160.10.10 237 378 8.6E-24 T 11-11-2016 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 SUPERFAMILY SSF51161 244 411 6.94E-29 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Gene3D G3DSA:3.90.550.10 1 235 1.6E-69 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 301 1.0E-6 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 331 363 0.0019 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Gene3D G3DSA:3.40.120.10 629 687 3.1E-7 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Gene3D G3DSA:3.40.120.10 382 520 4.7E-16 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 SUPERFAMILY SSF53738 632 728 2.63E-7 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Pfam PF00483 Nucleotidyl transferase 2 230 3.1E-46 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 Gene3D G3DSA:3.30.310.50 734 814 1.5E-12 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10085 9c65d0110b631f9dbb9fbf1a4b79e880 822 SUPERFAMILY SSF53738 375 514 3.92E-18 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 Pfam PF00871 Acetokinase family 3 390 2.4E-165 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 SUPERFAMILY SSF53067 1 196 2.27E-72 T 11-11-2016 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 204 221 - T 11-11-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 TIGRFAM TIGR00016 ackA: acetate kinase 2 396 1.0E-164 T 11-11-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 PRINTS PR00471 Acetate kinase family signature 323 339 7.9E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 PRINTS PR00471 Acetate kinase family signature 174 187 7.9E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 PRINTS PR00471 Acetate kinase family signature 204 225 7.9E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 PRINTS PR00471 Acetate kinase family signature 377 389 7.9E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 PRINTS PR00471 Acetate kinase family signature 3 14 7.9E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 PRINTS PR00471 Acetate kinase family signature 301 314 7.9E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 Gene3D G3DSA:3.30.420.40 206 395 1.4E-79 T 11-11-2016 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 11-11-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 SUPERFAMILY SSF53067 159 396 1.28E-93 T 11-11-2016 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 Gene3D G3DSA:3.30.420.40 1 205 2.2E-13 T 11-11-2016 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 Hamap MF_00020 Acetate kinase [ackA]. 1 397 197.346 T 11-11-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS01605 c195a13cace9101d525eca60bc881f4b 397 PIRSF PIRSF000722 1 397 2.4E-158 T 11-11-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 4 586 2.9E-228 T 11-11-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Pfam PF14493 Helix-turn-helix domain 618 706 4.7E-25 T 11-11-2016 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Gene3D G3DSA:3.40.50.300 3 195 3.5E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 SMART SM00341 516 596 1.9E-17 T 11-11-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 SUPERFAMILY SSF52540 56 343 8.35E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Pfam PF00570 HRDC domain 520 586 5.9E-21 T 11-11-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Pfam PF16124 RecQ zinc-binding 333 397 5.0E-14 T 11-11-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Gene3D G3DSA:3.40.50.300 198 334 2.7E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Gene3D G3DSA:1.10.150.80 520 594 3.8E-23 T 11-11-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Gene3D G3DSA:1.10.10.10 335 503 1.1E-54 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Pfam PF09382 RQC domain 400 504 2.9E-35 T 11-11-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 SUPERFAMILY SSF46785 395 523 6.53E-36 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Pfam PF00271 Helicase conserved C-terminal domain 213 322 3.4E-21 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 SUPERFAMILY SSF47819 518 594 1.92E-21 T 11-11-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 Pfam PF00270 DEAD/DEAH box helicase 19 179 5.7E-17 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 6 454 5.4E-144 T 11-11-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 SMART SM00490 241 322 2.9E-26 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 SMART SM00487 12 209 1.0E-26 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS12555 9d2e8c8404781ea11082bba4ddaece4b 718 SMART SM00956 404 507 6.1E-44 T 11-11-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 Pfam PF01266 FAD dependent oxidoreductase 3 353 1.0E-62 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 SUPERFAMILY SSF51905 1 217 1.9E-48 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 SUPERFAMILY SSF51905 314 401 1.9E-48 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 Gene3D G3DSA:3.30.9.10 85 138 2.7E-6 T 11-11-2016 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 Gene3D G3DSA:3.30.9.10 217 230 2.7E-6 T 11-11-2016 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 Gene3D G3DSA:3.50.50.60 1 82 7.8E-40 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 Gene3D G3DSA:3.50.50.60 314 357 7.8E-40 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 Gene3D G3DSA:3.50.50.60 139 216 7.8E-40 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13040 af253080ae476833c30d71b6e94f3aa1 493 Pfam PF04324 BFD-like [2Fe-2S] binding domain 397 451 6.1E-17 T 11-11-2016 IPR007419 BFD-like [2Fe-2S]-binding domain Gferi_RS01975 322268162051d73a739bd032d010ef64 492 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 482 35.263 T 11-11-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 Pfam PF08245 Mur ligase middle domain 108 308 7.8E-54 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 Gene3D G3DSA:3.90.190.20 333 475 4.5E-54 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 SUPERFAMILY SSF63418 1 99 5.36E-23 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 Pfam PF01225 Mur ligase family, catalytic domain 22 96 4.1E-12 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 20 482 4.2E-161 T 11-11-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 Gene3D G3DSA:3.40.1390.10 5 97 2.7E-25 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 Pfam PF02875 Mur ligase family, glutamate ligase domain 329 414 4.3E-24 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 SUPERFAMILY SSF53244 329 484 5.76E-48 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 106 129 - T 11-11-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 Gene3D G3DSA:3.40.1190.10 99 332 4.1E-78 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS01975 322268162051d73a739bd032d010ef64 492 SUPERFAMILY SSF53623 99 325 4.71E-71 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS07390 2d83873f9371ecc26e86cdd0aa916cdf 412 SUPERFAMILY SSF56059 102 306 3.01E-33 T 11-11-2016 Gferi_RS07390 2d83873f9371ecc26e86cdd0aa916cdf 412 Gene3D G3DSA:3.30.470.20 104 329 2.5E-26 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS07390 2d83873f9371ecc26e86cdd0aa916cdf 412 SUPERFAMILY SSF52440 2 67 5.75E-5 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS07390 2d83873f9371ecc26e86cdd0aa916cdf 412 Pfam PF13535 ATP-grasp domain 136 277 1.1E-10 T 11-11-2016 Gferi_RS07390 2d83873f9371ecc26e86cdd0aa916cdf 412 Gene3D G3DSA:3.40.50.20 2 103 8.2E-12 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS08320 601f64c7338904a2c566a72dc7ccde9c 325 Gene3D G3DSA:3.40.50.720 3 105 5.1E-29 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS08320 601f64c7338904a2c566a72dc7ccde9c 325 SUPERFAMILY SSF51735 98 282 6.31E-57 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS08320 601f64c7338904a2c566a72dc7ccde9c 325 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 313 7.7E-27 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Gferi_RS08320 601f64c7338904a2c566a72dc7ccde9c 325 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 220 236 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS08320 601f64c7338904a2c566a72dc7ccde9c 325 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 105 281 3.6E-58 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Gferi_RS08320 601f64c7338904a2c566a72dc7ccde9c 325 Gene3D G3DSA:3.40.50.720 106 282 2.1E-63 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS08320 601f64c7338904a2c566a72dc7ccde9c 325 SUPERFAMILY SSF52283 3 128 1.36E-27 T 11-11-2016 Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 Pfam PF03453 MoeA N-terminal region (domain I and II) 9 174 6.3E-31 T 11-11-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 Pfam PF00994 Probable molybdopterin binding domain 188 322 3.4E-25 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 Gene3D G3DSA:2.170.190.11 51 137 2.6E-24 T 11-11-2016 Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 Gene3D G3DSA:3.40.980.10 170 334 1.7E-54 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 183 320 3.0E-30 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 Gene3D G3DSA:3.90.105.10 138 169 5.5E-22 T 11-11-2016 Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 260 295 - T 11-11-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 SUPERFAMILY SSF53218 184 329 3.27E-38 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 Pfam PF03454 MoeA C-terminal region (domain IV) 342 409 2.0E-14 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 SUPERFAMILY SSF63882 8 183 1.83E-48 T 11-11-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 SMART SM00852 187 326 2.5E-37 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 Gene3D G3DSA:2.40.340.10 339 409 1.6E-18 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20815 e99bd2486f6149156026d14d84cf63a0 409 SUPERFAMILY SSF63867 338 409 9.55E-14 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 Gene3D G3DSA:3.30.450.20 76 154 1.6E-6 T 11-11-2016 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 Gene3D G3DSA:1.10.287.950 603 652 7.3E-44 T 11-11-2016 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 Gene3D G3DSA:1.10.287.950 401 560 7.3E-44 T 11-11-2016 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 SMART SM00304 302 357 6.3E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 Gene3D G3DSA:3.30.450.20 155 277 3.0E-26 T 11-11-2016 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 SUPERFAMILY SSF58104 392 661 4.58E-62 T 11-11-2016 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 SUPERFAMILY SSF58104 332 359 4.58E-62 T 11-11-2016 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 Pfam PF00672 HAMP domain 284 354 5.8E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 Pfam PF02743 Cache domain 34 264 4.8E-23 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 SMART SM00283 386 661 9.8E-57 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS19475 eba0d04cbc983c875448f4a0ca2f575a 662 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 454 660 1.9E-36 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 Pfam PF02954 Bacterial regulatory protein, Fis family 426 466 1.2E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 Pfam PF00989 PAS fold 23 74 4.8E-7 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 SUPERFAMILY SSF55785 22 116 1.12E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 247 262 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 Gene3D G3DSA:1.10.10.60 412 469 1.3E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 24 76 2.4E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 SUPERFAMILY SSF52540 159 404 1.8E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 SMART SM00091 22 88 2.7E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 Pfam PF00158 Sigma-54 interaction domain 160 328 2.9E-72 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 SUPERFAMILY SSF46689 374 468 3.54E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 SMART SM00382 180 324 1.9E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 184 197 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 Gene3D G3DSA:3.40.50.300 157 333 1.6E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 Gene3D G3DSA:3.30.450.20 20 84 7.6E-14 T 11-11-2016 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 374 383 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 Gene3D G3DSA:1.10.8.60 334 411 8.0E-24 T 11-11-2016 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 469 1.5E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS09065 44d016f6c6da4202aa26659dc8179f86 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 1.5E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS17845 fd651c71372825d94a56af2102a7424f 369 Gene3D G3DSA:3.90.1720.10 208 332 3.0E-4 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS17845 fd651c71372825d94a56af2102a7424f 369 Pfam PF12671 Putative amidase domain 208 364 8.4E-42 T 11-11-2016 IPR024301 Putative amidase domain Gferi_RS25460 daa0742afe968aa17f3813c06d573a31 262 Gene3D G3DSA:3.40.50.1820 58 260 8.3E-22 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS25460 daa0742afe968aa17f3813c06d573a31 262 SUPERFAMILY SSF53474 59 261 1.03E-14 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS04725 701377990ca9f833f70d149ea2fff333 265 Pfam PF10997 Protein of unknown function (DUF2837) 14 263 3.6E-96 T 11-11-2016 IPR021260 Protein of unknown function DUF2837 Gferi_RS24800 f05ab1b8e09229ec90e0b8b113681e86 299 SUPERFAMILY SSF52540 2 257 1.07E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24800 f05ab1b8e09229ec90e0b8b113681e86 299 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 227 257 3.5E-6 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS24800 f05ab1b8e09229ec90e0b8b113681e86 299 Gene3D G3DSA:3.40.50.300 1 249 1.1E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24800 f05ab1b8e09229ec90e0b8b113681e86 299 Pfam PF00005 ABC transporter 18 176 4.0E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS24800 f05ab1b8e09229ec90e0b8b113681e86 299 SMART SM00382 26 233 5.0E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS24800 f05ab1b8e09229ec90e0b8b113681e86 299 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 30 43 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS15245 850b2b54c8a920bdbe5b3a0983129f8f 596 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 469 497 - T 11-11-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Gferi_RS15245 850b2b54c8a920bdbe5b3a0983129f8f 596 SUPERFAMILY SSF48452 407 464 1.06E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS15245 850b2b54c8a920bdbe5b3a0983129f8f 596 SUPERFAMILY SSF48452 106 293 1.06E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS15245 850b2b54c8a920bdbe5b3a0983129f8f 596 Gene3D G3DSA:1.25.40.10 106 336 2.0E-6 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS15245 850b2b54c8a920bdbe5b3a0983129f8f 596 SUPERFAMILY SSF53955 435 587 8.66E-41 T 11-11-2016 IPR023346 Lysozyme-like domain Gferi_RS15245 850b2b54c8a920bdbe5b3a0983129f8f 596 Pfam PF01464 Transglycosylase SLT domain 452 564 1.1E-28 T 11-11-2016 IPR008258 Transglycosylase SLT domain 1 Gferi_RS15245 850b2b54c8a920bdbe5b3a0983129f8f 596 Gene3D G3DSA:1.10.530.10 444 593 1.9E-45 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 Gene3D G3DSA:2.70.150.10 168 315 4.9E-33 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 Gene3D G3DSA:3.40.1110.10 421 533 1.4E-16 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 Gene3D G3DSA:3.40.50.1000 534 675 1.9E-44 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 Gene3D G3DSA:3.40.50.1000 380 420 1.9E-44 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 146 710 1.8E-124 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 408 414 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 Pfam PF00702 haloacid dehalogenase-like hydrolase 402 621 6.0E-37 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 SUPERFAMILY SSF56784 464 707 1.79E-54 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 SUPERFAMILY SSF56784 404 424 1.79E-54 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 264 278 6.8E-24 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 631 643 6.8E-24 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 531 542 6.8E-24 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 607 626 6.8E-24 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 554 564 6.8E-24 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 406 420 6.8E-24 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 Pfam PF00122 E1-E2 ATPase 186 397 1.1E-57 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 SUPERFAMILY SSF81665 315 400 4.45E-12 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 SUPERFAMILY SSF81665 166 218 4.45E-12 T 11-11-2016 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 187 681 2.1E-77 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00941 Cadmium-transporting ATPase signature 280 296 1.6E-12 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00941 Cadmium-transporting ATPase signature 144 156 1.6E-12 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00941 Cadmium-transporting ATPase signature 199 219 1.6E-12 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00941 Cadmium-transporting ATPase signature 28 49 1.6E-12 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 PRINTS PR00941 Cadmium-transporting ATPase signature 299 313 1.6E-12 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 165 710 2.0E-170 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS11795 bc9e2f44958e6174b3071cb66fa79e51 722 SUPERFAMILY SSF81653 218 314 1.44E-25 T 11-11-2016 Gferi_RS12975 93d7862288bb26a4d4fd7aac94e34192 73 Gene3D G3DSA:3.30.460.10 7 64 1.9E-13 T 11-11-2016 Gferi_RS12975 93d7862288bb26a4d4fd7aac94e34192 73 Pfam PF01909 Nucleotidyltransferase domain 14 54 3.4E-9 T 11-11-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Gferi_RS12975 93d7862288bb26a4d4fd7aac94e34192 73 SUPERFAMILY SSF81301 10 68 3.54E-13 T 11-11-2016 Gferi_RS25555 4150741f769da86dc481c4dc32ff4b05 275 Pfam PF00990 Diguanylate cyclase, GGDEF domain 112 266 1.0E-38 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS25555 4150741f769da86dc481c4dc32ff4b05 275 SMART SM00267 99 272 1.5E-44 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS25555 4150741f769da86dc481c4dc32ff4b05 275 Gene3D G3DSA:3.30.70.270 112 267 1.6E-40 T 11-11-2016 Gferi_RS25555 4150741f769da86dc481c4dc32ff4b05 275 SUPERFAMILY SSF55073 115 266 1.1E-38 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS25555 4150741f769da86dc481c4dc32ff4b05 275 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 110 267 1.0E-38 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS07185 8d09bb8466bee994f4ebd9815e9380e9 88 Gene3D G3DSA:3.40.1410.10 1 82 3.6E-18 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS07185 8d09bb8466bee994f4ebd9815e9380e9 88 Pfam PF07702 UTRA domain 1 79 3.5E-14 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS07185 8d09bb8466bee994f4ebd9815e9380e9 88 SUPERFAMILY SSF64288 1 84 1.1E-17 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 210 236 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 Pfam PF04542 Sigma-70 region 2 24 94 3.0E-16 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 Gene3D G3DSA:1.10.10.10 94 135 1.4E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 Gene3D G3DSA:1.10.601.10 14 86 1.0E-20 T 11-11-2016 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 Pfam PF04545 Sigma-70, region 4 190 237 8.7E-19 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 PIRSF PIRSF000770 1 242 4.1E-53 T 11-11-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 22 240 3.4E-80 T 11-11-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 PRINTS PR00046 Major sigma-70 factor signature 49 62 1.8E-11 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 PRINTS PR00046 Major sigma-70 factor signature 225 236 1.8E-11 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 PRINTS PR00046 Major sigma-70 factor signature 210 225 1.8E-11 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 PRINTS PR00046 Major sigma-70 factor signature 193 205 1.8E-11 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 Gene3D G3DSA:1.10.10.10 177 241 2.2E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 49 62 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 240 1.3E-38 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 SUPERFAMILY SSF88659 95 166 9.16E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 SUPERFAMILY SSF88659 163 241 2.62E-21 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 Pfam PF04539 Sigma-70 region 3 104 171 2.5E-6 T 11-11-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00825 a676524796e23a95e2f04d0042da2da0 242 SUPERFAMILY SSF88946 4 94 2.51E-27 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS17285 20d0eb5840b0a10c2866004ca09c09f2 248 Gene3D G3DSA:3.30.1330.30 1 76 3.5E-24 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS17285 20d0eb5840b0a10c2866004ca09c09f2 248 Pfam PF00588 SpoU rRNA Methylase family 98 238 2.9E-41 T 11-11-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Gferi_RS17285 20d0eb5840b0a10c2866004ca09c09f2 248 SUPERFAMILY SSF55315 2 78 1.32E-19 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS17285 20d0eb5840b0a10c2866004ca09c09f2 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 80 3.3E-23 T 11-11-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Gferi_RS17285 20d0eb5840b0a10c2866004ca09c09f2 248 Gene3D G3DSA:3.40.1280.10 92 245 2.1E-55 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Gferi_RS17285 20d0eb5840b0a10c2866004ca09c09f2 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 5 244 7.0E-85 T 11-11-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Gferi_RS17285 20d0eb5840b0a10c2866004ca09c09f2 248 SMART SM00967 6 81 1.9E-22 T 11-11-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Gferi_RS17285 20d0eb5840b0a10c2866004ca09c09f2 248 SUPERFAMILY SSF75217 69 245 1.31E-51 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases Gferi_RS25040 adb03b0129a36bff5f6ce3a5dc0aa7d4 264 SUPERFAMILY SSF56176 6 158 1.69E-22 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Gferi_RS25040 adb03b0129a36bff5f6ce3a5dc0aa7d4 264 SUPERFAMILY SSF55447 164 262 4.19E-13 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS25040 adb03b0129a36bff5f6ce3a5dc0aa7d4 264 Gene3D G3DSA:3.30.390.50 166 261 2.3E-15 T 11-11-2016 Gferi_RS25040 adb03b0129a36bff5f6ce3a5dc0aa7d4 264 SMART SM01092 165 260 4.1E-8 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS25040 adb03b0129a36bff5f6ce3a5dc0aa7d4 264 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 166 260 3.4E-9 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS25040 adb03b0129a36bff5f6ce3a5dc0aa7d4 264 Gene3D G3DSA:3.30.465.10 53 151 5.3E-14 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Gferi_RS25040 adb03b0129a36bff5f6ce3a5dc0aa7d4 264 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 6 151 2.9E-19 T 11-11-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 SUPERFAMILY SSF53850 1 185 1.41E-52 T 11-11-2016 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 PIRSF PIRSF001500 1 271 2.5E-92 T 11-11-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 154 176 - T 11-11-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 Gene3D G3DSA:3.30.70.260 184 268 2.9E-32 T 11-11-2016 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 Pfam PF00800 Prephenate dehydratase 3 180 6.2E-60 T 11-11-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 217 224 - T 11-11-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 Pfam PF01842 ACT domain 196 255 8.5E-8 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 Gene3D G3DSA:3.40.190.10 1 86 1.1E-28 T 11-11-2016 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 Gene3D G3DSA:3.40.190.10 87 166 1.0E-21 T 11-11-2016 Gferi_RS13420 b7b0527ed8d9b9fbd1afa4fcabb4cf4c 284 SUPERFAMILY SSF55021 173 268 4.93E-29 T 11-11-2016 Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 Gene3D G3DSA:3.40.50.720 2 248 1.5E-71 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.6E-9 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.6E-9 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 3.6E-9 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 SUPERFAMILY SSF51735 2 249 8.24E-70 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 247 3.6E-52 T 11-11-2016 Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 3.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 3.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 3.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21555 db21e8b7dcf74d944bd4878cdcb52e81 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS08355 fb5b23e84bcbf80c2986647fa8a7e41c 326 PRINTS PR00069 Aldo-keto reductase signature 42 66 1.4E-12 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS08355 fb5b23e84bcbf80c2986647fa8a7e41c 326 PRINTS PR00069 Aldo-keto reductase signature 139 156 1.4E-12 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS08355 fb5b23e84bcbf80c2986647fa8a7e41c 326 PRINTS PR00069 Aldo-keto reductase signature 108 126 1.4E-12 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS08355 fb5b23e84bcbf80c2986647fa8a7e41c 326 SUPERFAMILY SSF51430 1 323 4.06E-84 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS08355 fb5b23e84bcbf80c2986647fa8a7e41c 326 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 139 156 - T 11-11-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 Gferi_RS08355 fb5b23e84bcbf80c2986647fa8a7e41c 326 Gene3D G3DSA:3.20.20.100 2 323 5.4E-88 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS08355 fb5b23e84bcbf80c2986647fa8a7e41c 326 Pfam PF00248 Aldo/keto reductase family 16 320 3.5E-71 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS24885 c203f95d17521f457bc695504998cae2 119 Gene3D G3DSA:3.30.1330.20 2 117 7.5E-44 T 11-11-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 Gferi_RS24885 c203f95d17521f457bc695504998cae2 119 Pfam PF09585 Conserved hypothetical protein (Lin0512_fam) 4 115 2.0E-41 T 11-11-2016 IPR011719 Conserved hypothetical protein CHP02058 Gferi_RS24885 c203f95d17521f457bc695504998cae2 119 TIGRFAM TIGR02058 lin0512_fam: conserved hypothetical protein 3 116 2.7E-31 T 11-11-2016 IPR011719 Conserved hypothetical protein CHP02058 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 329 436 7.6E-20 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 309 2.7E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 296 2.6E-24 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 124 142 2.6E-24 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.6E-24 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 247 263 2.6E-24 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 163 181 2.6E-24 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 Gene3D G3DSA:3.50.50.60 1 127 4.1E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 SUPERFAMILY SSF51905 1 320 4.72E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 SUPERFAMILY SSF55424 328 441 7.22E-26 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 Gene3D G3DSA:3.30.390.30 328 442 3.2E-26 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 36 51 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 404 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 127 136 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 431 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 163 188 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 325 346 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 289 296 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 248 262 1.1E-47 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 PIRSF PIRSF000350 1 441 4.4E-53 T 11-11-2016 Gferi_RS09290 af45a0ced201e1f678f453b4cfa21951 456 Gene3D G3DSA:3.50.50.60 128 318 1.0E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18315 300274be6ac539b16936eeb2115bf87a 119 SUPERFAMILY SSF52968 8 118 9.81E-33 T 11-11-2016 IPR010254 B12-dependent dehydratases, beta subunit Gferi_RS18315 300274be6ac539b16936eeb2115bf87a 119 Pfam PF02288 Dehydratase medium subunit 9 117 2.0E-33 T 11-11-2016 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor Gferi_RS18315 300274be6ac539b16936eeb2115bf87a 119 Gene3D G3DSA:3.40.50.10150 7 118 6.1E-38 T 11-11-2016 IPR010254 B12-dependent dehydratases, beta subunit Gferi_RS18315 300274be6ac539b16936eeb2115bf87a 119 PIRSF PIRSF011503 1 119 4.0E-36 T 11-11-2016 IPR009192 Diol/glycerol dehydratase reactivating factor, small subunit Gferi_RS21500 8727553ab6c3ed444d81e6652632c93d 201 SUPERFAMILY SSF52266 33 199 1.08E-30 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain Gferi_RS21500 8727553ab6c3ed444d81e6652632c93d 201 Gene3D G3DSA:3.40.50.1110 27 199 1.8E-27 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain Gferi_RS21500 8727553ab6c3ed444d81e6652632c93d 201 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 38 192 4.4E-18 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 127 139 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 60 70 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 194 210 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 105 113 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 39 54 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 166 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 290 2.9E-72 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 6.6E-35 T 11-11-2016 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 6.6E-35 T 11-11-2016 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 6.6E-35 T 11-11-2016 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 6.6E-35 T 11-11-2016 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 6.6E-35 T 11-11-2016 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 5 309 6.5E-114 T 11-11-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 SUPERFAMILY SSF51905 5 308 1.52E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 Gene3D G3DSA:3.50.50.60 109 305 1.2E-36 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 Gene3D G3DSA:3.50.50.60 3 108 4.8E-34 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 298 2.6E-51 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24385 ae298e259b3d03c50532a0004b0178eb 315 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 134 154 - T 11-11-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Gferi_RS07440 72b0977cdc2fd0b0f21e0fe663c196c8 224 Gene3D G3DSA:1.10.150.240 15 89 8.8E-25 T 11-11-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 Gferi_RS07440 72b0977cdc2fd0b0f21e0fe663c196c8 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 114 193 6.3E-7 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS07440 72b0977cdc2fd0b0f21e0fe663c196c8 224 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 2 223 1.7E-52 T 11-11-2016 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 Gferi_RS07440 72b0977cdc2fd0b0f21e0fe663c196c8 224 SUPERFAMILY SSF56784 1 224 9.67E-37 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07440 72b0977cdc2fd0b0f21e0fe663c196c8 224 Gene3D G3DSA:3.40.50.1000 90 224 5.7E-30 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07440 72b0977cdc2fd0b0f21e0fe663c196c8 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 197 8.5E-17 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 SUPERFAMILY SSF140990 415 602 4.84E-65 T 11-11-2016 Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 112 599 1.6E-203 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 201 333 2.1E-45 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 SMART SM00382 197 336 1.5E-24 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 Pfam PF06480 FtsH Extracellular 11 99 3.9E-6 T 11-11-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 9 603 33.686 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 Gene3D G3DSA:3.40.50.300 160 342 6.5E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 SUPERFAMILY SSF52540 158 404 4.91E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 Pfam PF01434 Peptidase family M41 395 599 6.7E-66 T 11-11-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 ProSitePatterns PS00674 AAA-protein family signature. 304 322 - T 11-11-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Gferi_RS07230 a0291c8b62aa676d3ce2e5dfdb541be7 604 Gene3D G3DSA:1.10.8.60 343 408 1.5E-20 T 11-11-2016 Gferi_RS26310 198d308e39abd2904b0154e3b9bb277b 131 PIRSF PIRSF006614 1 131 1.2E-61 T 11-11-2016 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 Gferi_RS26310 198d308e39abd2904b0154e3b9bb277b 131 SMART SM00851 14 107 3.3E-25 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS26310 198d308e39abd2904b0154e3b9bb277b 131 Gene3D G3DSA:3.40.50.1380 1 130 8.1E-63 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS26310 198d308e39abd2904b0154e3b9bb277b 131 Pfam PF02142 MGS-like domain 15 107 3.8E-19 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS26310 198d308e39abd2904b0154e3b9bb277b 131 ProSitePatterns PS01335 Methylglyoxal synthase active site. 54 62 - T 11-11-2016 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 Gferi_RS26310 198d308e39abd2904b0154e3b9bb277b 131 SUPERFAMILY SSF52335 1 130 2.75E-54 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS26310 198d308e39abd2904b0154e3b9bb277b 131 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 1 120 35.014 T 11-11-2016 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 Gferi_RS26310 198d308e39abd2904b0154e3b9bb277b 131 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 2 122 2.7E-59 T 11-11-2016 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 Gene3D G3DSA:3.40.47.10 261 410 2.8E-61 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 245 6.4E-60 T 11-11-2016 IPR014030 Beta-ketoacyl synthase, N-terminal Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 PIRSF PIRSF000447 1 411 2.6E-180 T 11-11-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 SUPERFAMILY SSF53901 3 250 7.2E-75 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 Gene3D G3DSA:3.40.47.10 1 258 4.1E-73 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 SMART SM00825 Beta-ketoacyl synthase 5 412 1.9E-14 T 11-11-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 11-11-2016 IPR018201 Beta-ketoacyl synthase, active site Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 3 408 8.9E-189 T 11-11-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 SUPERFAMILY SSF53901 214 410 1.46E-68 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10155 a7b3acdc9a8a0e282dd7535f6e514487 412 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 367 2.6E-38 T 11-11-2016 IPR014031 Beta-ketoacyl synthase, C-terminal Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 Gene3D G3DSA:2.30.22.10 136 191 4.3E-24 T 11-11-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 Hamap MF_01151 Protein GrpE [grpE]. 8 192 20.691 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 SUPERFAMILY SSF51064 137 191 9.55E-17 T 11-11-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 PRINTS PR00773 GrpE protein signature 144 159 9.7E-29 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 PRINTS PR00773 GrpE protein signature 89 104 9.7E-29 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 PRINTS PR00773 GrpE protein signature 171 190 9.7E-29 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 PRINTS PR00773 GrpE protein signature 61 77 9.7E-29 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 ProSitePatterns PS01071 grpE protein signature. 147 190 - T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 Gene3D G3DSA:3.90.20.20 38 134 6.0E-30 T 11-11-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 SUPERFAMILY SSF58014 40 136 2.09E-27 T 11-11-2016 Gferi_RS02350 75de0659d129333b37bf914bece885ec 192 Pfam PF01025 GrpE 29 191 2.5E-51 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Gferi_RS15480 4db7793227d6ce971ea7cba1ab01bbaa 473 Pfam PF00474 Sodium:solute symporter family 33 418 3.5E-29 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 682 791 4.9E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Gene3D G3DSA:3.30.450.20 411 535 1.3E-13 T 11-11-2016 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Pfam PF12860 PAS fold 306 417 2.2E-7 T 11-11-2016 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Gene3D G3DSA:3.30.450.20 290 410 5.6E-10 T 11-11-2016 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 SMART SM00388 563 635 6.3E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 SUPERFAMILY SSF55874 624 795 1.19E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Gene3D G3DSA:3.30.565.10 622 791 2.8E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 718 732 3.0E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 777 790 3.0E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 753 771 3.0E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 PRINTS PR00344 Bacterial sensor protein C-terminal signature 736 746 3.0E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 SMART SM00387 681 793 5.7E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 SUPERFAMILY SSF55785 288 411 1.19E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 421 542 5.1E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 SUPERFAMILY SSF47384 551 635 3.34E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 SMART SM00091 425 490 2.9 T 11-11-2016 IPR000014 PAS domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 SMART SM00091 300 370 0.39 T 11-11-2016 IPR000014 PAS domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 SUPERFAMILY SSF55785 410 535 1.34E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Pfam PF17159 Membrane-associated sensor domain 47 270 5.8E-48 T 11-11-2016 IPR033425 Membrane-associated sensor domain MASE3 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Gene3D G3DSA:1.10.287.130 555 621 7.0E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Pfam PF00512 His Kinase A (phospho-acceptor) domain 564 635 1.8E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17695 da5c0664486b35ce8bc4994a7a1c25d7 826 Pfam PF13426 PAS domain 435 536 9.1E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 Gene3D G3DSA:2.40.50.140 144 216 9.3E-9 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 Pfam PF00575 S1 RNA binding domain 144 208 3.9E-6 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 Pfam PF13509 S1 domain 73 132 1.8E-7 T 11-11-2016 Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 Pfam PF13509 S1 domain 4 66 5.5E-20 T 11-11-2016 Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 SMART SM00316 72 133 24.0 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 SMART SM00316 145 208 5.4E-7 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 SMART SM00316 3 67 0.44 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 SUPERFAMILY SSF50249 144 214 1.25E-11 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS08940 2e8548df7b8d1cda41f1ae33d4b1638f 280 PIRSF PIRSF012524 1 279 4.0E-80 T 11-11-2016 IPR014464 Conserved virulence factor B Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 PRINTS PR00175 Sodium/alanine symporter signature 457 477 8.4E-38 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 PRINTS PR00175 Sodium/alanine symporter signature 113 135 8.4E-38 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 PRINTS PR00175 Sodium/alanine symporter signature 333 351 8.4E-38 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 PRINTS PR00175 Sodium/alanine symporter signature 242 261 8.4E-38 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 PRINTS PR00175 Sodium/alanine symporter signature 214 232 8.4E-38 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 PRINTS PR00175 Sodium/alanine symporter signature 391 413 8.4E-38 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 TIGRFAM TIGR00835 agcS: amino acid carrier protein 44 478 3.7E-94 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 Pfam PF01235 Sodium:alanine symporter family 76 491 3.0E-96 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS12450 a2e8f7186d181251d48aef5436b9e73c 517 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 113 128 - T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 SUPERFAMILY SSF55785 125 259 2.27E-19 T 11-11-2016 IPR000014 PAS domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 SUPERFAMILY SSF55785 39 135 4.89E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 9 135 2.2E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 144 268 2.2E-17 T 11-11-2016 IPR000014 PAS domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 Gene3D G3DSA:3.30.450.20 8 125 4.7E-15 T 11-11-2016 Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 SUPERFAMILY SSF55073 277 417 1.96E-33 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 Pfam PF08448 PAS fold 147 261 8.3E-13 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 SMART SM00091 140 208 0.0061 T 11-11-2016 IPR000014 PAS domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 SMART SM00091 11 89 4.0 T 11-11-2016 IPR000014 PAS domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 Pfam PF13188 PAS domain 13 79 3.3E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 SMART SM00471 438 573 5.6E-4 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 271 417 2.7E-34 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 SUPERFAMILY SSF109604 419 603 2.37E-37 T 11-11-2016 Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 Gene3D G3DSA:3.30.450.20 126 259 1.2E-20 T 11-11-2016 Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 Gene3D G3DSA:3.30.70.270 273 416 7.1E-38 T 11-11-2016 Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 Pfam PF13487 HD domain 494 555 7.5E-19 T 11-11-2016 Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 Gene3D G3DSA:1.10.3210.10 427 607 2.7E-21 T 11-11-2016 IPR006674 HD domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 Pfam PF00990 Diguanylate cyclase, GGDEF domain 273 416 5.8E-35 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS15665 7f2df37f0e79100da33a0f47a6d79e18 625 SMART SM00267 261 426 1.9E-42 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 247 258 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 SUPERFAMILY SSF54862 201 282 3.26E-15 T 11-11-2016 Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 Gene3D G3DSA:1.10.1060.10 183 221 7.0E-6 T 11-11-2016 Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 Pfam PF13237 4Fe-4S dicluster domain 208 258 3.4E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 Gene3D G3DSA:3.30.70.20 254 289 5.2E-4 T 11-11-2016 Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 216 227 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 SUPERFAMILY SSF52218 1 138 1.22E-16 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 Pfam PF03358 NADPH-dependent FMN reductase 1 113 5.1E-6 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 Gene3D G3DSA:3.30.70.20 222 253 1.4E-9 T 11-11-2016 Gferi_RS07625 254ea398aa7f86ee31605b8d00481b85 294 Gene3D G3DSA:3.40.50.360 1 167 3.3E-15 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS02205 4637d301bf6dfca28f7861033c8a15ed 343 Gene3D G3DSA:3.40.50.1100 103 329 3.8E-48 T 11-11-2016 Gferi_RS02205 4637d301bf6dfca28f7861033c8a15ed 343 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 14 317 4.1E-42 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS02205 4637d301bf6dfca28f7861033c8a15ed 343 SUPERFAMILY SSF53686 14 327 2.47E-65 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS02205 4637d301bf6dfca28f7861033c8a15ed 343 PIRSF PIRSF006278 2 333 3.9E-73 T 11-11-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 Gene3D G3DSA:1.10.287.950 323 527 1.6E-49 T 11-11-2016 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 SMART SM00304 210 262 3.4E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 370 554 3.1E-51 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 SUPERFAMILY SSF58104 230 264 1.1E-61 T 11-11-2016 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 SUPERFAMILY SSF58104 328 556 1.1E-61 T 11-11-2016 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 Pfam PF00672 HAMP domain 191 256 4.4E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 329 358 5.3E-34 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 483 512 5.3E-34 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 435 464 5.3E-34 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 433 5.3E-34 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 17 42 5.3E-34 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 SMART SM00283 308 555 1.6E-68 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS21170 09b92b24b1a1c73284edb4c9ed265ee6 587 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 181 3.7E-19 T 11-11-2016 IPR024478 4HB MCP domain Gferi_RS08495 6442a0ceffea1bf8c5630fc391b41a18 318 Pfam PF06166 Protein of unknown function (DUF979) 8 318 2.0E-113 T 11-11-2016 IPR009323 Protein of unknown function DUF979 Gferi_RS06040 319212c14a2abcc68d52e779b9d5e7c2 170 Pfam PF01292 Prokaryotic cytochrome b561 8 139 5.4E-9 T 11-11-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 Gferi_RS06040 319212c14a2abcc68d52e779b9d5e7c2 170 SUPERFAMILY SSF81342 8 139 7.85E-10 T 11-11-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 Gferi_RS06040 319212c14a2abcc68d52e779b9d5e7c2 170 Gene3D G3DSA:1.20.950.20 87 139 4.9E-4 T 11-11-2016 Gferi_RS06040 319212c14a2abcc68d52e779b9d5e7c2 170 Gene3D G3DSA:1.20.950.20 5 81 1.8E-8 T 11-11-2016 Gferi_RS10590 16915e62729929dc7c21b19c2144427e 192 Pfam PF04542 Sigma-70 region 2 23 89 1.3E-19 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10590 16915e62729929dc7c21b19c2144427e 192 SUPERFAMILY SSF88659 114 176 6.73E-15 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10590 16915e62729929dc7c21b19c2144427e 192 Gene3D G3DSA:1.10.1740.10 3 103 1.6E-34 T 11-11-2016 Gferi_RS10590 16915e62729929dc7c21b19c2144427e 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 175 7.0E-32 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10590 16915e62729929dc7c21b19c2144427e 192 Gene3D G3DSA:1.10.10.10 115 177 2.8E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10590 16915e62729929dc7c21b19c2144427e 192 Pfam PF08281 Sigma-70, region 4 118 168 2.7E-13 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10590 16915e62729929dc7c21b19c2144427e 192 SUPERFAMILY SSF88946 3 102 2.2E-29 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10735 3405a429cfaa051913e22b11d06a38bf 359 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 327 1.3E-94 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10735 3405a429cfaa051913e22b11d06a38bf 359 SUPERFAMILY SSF51735 1 355 1.66E-84 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10735 3405a429cfaa051913e22b11d06a38bf 359 Gene3D G3DSA:3.90.25.10 193 353 6.5E-50 T 11-11-2016 Gferi_RS10735 3405a429cfaa051913e22b11d06a38bf 359 Gene3D G3DSA:3.40.50.720 1 192 6.1E-64 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10735 3405a429cfaa051913e22b11d06a38bf 359 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 342 7.0E-140 T 11-11-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 Gferi_RS24870 20a3456db8db0849b3cc711ecf8aa982 150 Gene3D G3DSA:3.30.70.20 103 134 1.5E-11 T 11-11-2016 Gferi_RS24870 20a3456db8db0849b3cc711ecf8aa982 150 SUPERFAMILY SSF54862 4 146 2.18E-32 T 11-11-2016 Gferi_RS24870 20a3456db8db0849b3cc711ecf8aa982 150 Gene3D G3DSA:3.30.70.20 65 102 2.5E-13 T 11-11-2016 Gferi_RS24870 20a3456db8db0849b3cc711ecf8aa982 150 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 94 105 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS24870 20a3456db8db0849b3cc711ecf8aa982 150 Pfam PF13247 4Fe-4S dicluster domain 57 144 1.1E-19 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24870 20a3456db8db0849b3cc711ecf8aa982 150 Gene3D G3DSA:3.30.70.20 135 148 1.1E-15 T 11-11-2016 Gferi_RS24870 20a3456db8db0849b3cc711ecf8aa982 150 Gene3D G3DSA:3.30.70.20 4 64 1.1E-15 T 11-11-2016 Gferi_RS25520 db394ecb774c04ebd98bf955b7b91862 407 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 397 3.5E-36 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 Gene3D G3DSA:3.40.630.30 28 108 5.4E-8 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 PIRSF PIRSF005751 2 335 2.7E-107 T 11-11-2016 IPR005216 Citrate lyase ligase GO:0008771 Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 12 322 1.9E-91 T 11-11-2016 IPR005216 Citrate lyase ligase GO:0008771 Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 SMART SM00764 140 320 1.4E-95 T 11-11-2016 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 SUPERFAMILY SSF52374 143 321 4.97E-21 T 11-11-2016 Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 144 320 2.0E-47 T 11-11-2016 Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 Gene3D G3DSA:3.40.50.620 125 321 1.9E-34 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 Pfam PF08218 Citrate lyase ligase C-terminal domain 141 320 3.9E-70 T 11-11-2016 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 Gferi_RS08395 409d32c1e5226e9958ef629e7f48b7bb 342 SUPERFAMILY SSF55729 22 107 1.7E-9 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS14025 e4f015a4946af74b4626cdb18f60b71b 231 Gene3D G3DSA:3.40.50.2300 2 155 2.2E-40 T 11-11-2016 Gferi_RS14025 e4f015a4946af74b4626cdb18f60b71b 231 SUPERFAMILY SSF46894 138 230 2.47E-28 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS14025 e4f015a4946af74b4626cdb18f60b71b 231 Pfam PF00072 Response regulator receiver domain 6 115 3.6E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14025 e4f015a4946af74b4626cdb18f60b71b 231 Gene3D G3DSA:1.10.10.10 156 230 5.0E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14025 e4f015a4946af74b4626cdb18f60b71b 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 230 1.3E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14025 e4f015a4946af74b4626cdb18f60b71b 231 SMART SM00862 155 230 2.1E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14025 e4f015a4946af74b4626cdb18f60b71b 231 SMART SM00448 4 114 1.8E-44 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14025 e4f015a4946af74b4626cdb18f60b71b 231 SUPERFAMILY SSF52172 2 126 1.07E-40 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS12290 4d5ddfecf5b56454890239c87795fdbb 192 SUPERFAMILY SSF53323 5 190 4.84E-53 T 11-11-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Gferi_RS12290 4d5ddfecf5b56454890239c87795fdbb 192 Gene3D G3DSA:3.40.920.10 4 191 1.3E-60 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS12290 4d5ddfecf5b56454890239c87795fdbb 192 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 5 191 2.3E-70 T 11-11-2016 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 Gferi_RS12290 4d5ddfecf5b56454890239c87795fdbb 192 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 14 186 1.4E-38 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS16375 059d4e4ce5b56394a40cd8943dd9496a 212 SUPERFAMILY SSF52242 73 212 1.83E-40 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16375 059d4e4ce5b56394a40cd8943dd9496a 212 Gene3D G3DSA:1.10.1240.10 5 77 2.2E-11 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16375 059d4e4ce5b56394a40cd8943dd9496a 212 Gene3D G3DSA:3.40.50.280 78 212 6.5E-47 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16375 059d4e4ce5b56394a40cd8943dd9496a 212 Pfam PF02607 B12 binding domain 5 79 3.4E-13 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16375 059d4e4ce5b56394a40cd8943dd9496a 212 SMART SM01018 1 86 1.3E-19 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16375 059d4e4ce5b56394a40cd8943dd9496a 212 Pfam PF02310 B12 binding domain 92 195 3.2E-21 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16375 059d4e4ce5b56394a40cd8943dd9496a 212 SUPERFAMILY SSF47644 3 84 1.57E-17 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 50 1.8E-21 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 5 15 3.0E-5 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 15 25 3.0E-5 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 SUPERFAMILY SSF47413 3 61 1.06E-19 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 Pfam PF13377 Periplasmic binding protein-like domain 174 335 7.4E-32 T 11-11-2016 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 SMART SM00354 3 73 3.2E-32 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 SUPERFAMILY SSF53822 63 336 1.14E-69 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 Gene3D G3DSA:1.10.260.40 4 55 1.5E-25 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 Gene3D G3DSA:3.40.50.2300 56 176 1.5E-36 T 11-11-2016 Gferi_RS20850 744f0d23776b3d665abb5ad10c5518ec 339 Gene3D G3DSA:3.40.50.2300 177 317 9.3E-47 T 11-11-2016 Gferi_RS11760 0caa1dbe9d477787e79bd5e974f7fdc4 293 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 19 288 7.9E-34 T 11-11-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal Gferi_RS11760 0caa1dbe9d477787e79bd5e974f7fdc4 293 PIRSF PIRSF018688 1 293 1.9E-82 T 11-11-2016 IPR016732 Uncharacterised conserved protein UCP018688 Gferi_RS11760 0caa1dbe9d477787e79bd5e974f7fdc4 293 SUPERFAMILY SSF55729 132 292 8.48E-50 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11760 0caa1dbe9d477787e79bd5e974f7fdc4 293 SUPERFAMILY SSF55729 1 130 4.66E-28 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11760 0caa1dbe9d477787e79bd5e974f7fdc4 293 Gene3D G3DSA:3.40.630.30 1 126 1.9E-32 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11760 0caa1dbe9d477787e79bd5e974f7fdc4 293 Gene3D G3DSA:3.40.630.30 127 286 7.2E-57 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS23975 e513f3cd93f156001c7138de1c40ab9a 270 Gene3D G3DSA:3.90.79.10 109 266 2.8E-43 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS23975 e513f3cd93f156001c7138de1c40ab9a 270 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 111 138 2.1E-10 T 11-11-2016 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 Gferi_RS23975 e513f3cd93f156001c7138de1c40ab9a 270 Pfam PF00293 NUDIX domain 148 266 3.4E-17 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS23975 e513f3cd93f156001c7138de1c40ab9a 270 ProSitePatterns PS00893 Nudix box signature. 177 198 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS23975 e513f3cd93f156001c7138de1c40ab9a 270 SUPERFAMILY SSF55811 96 252 9.48E-41 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS23975 e513f3cd93f156001c7138de1c40ab9a 270 SUPERFAMILY SSF55811 12 114 2.68E-13 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS23975 e513f3cd93f156001c7138de1c40ab9a 270 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 17 109 2.9E-11 T 11-11-2016 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 Gferi_RS14235 9637a85c41ffa861fefa2243be37bdf4 175 Pfam PF04545 Sigma-70, region 4 116 163 4.8E-9 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14235 9637a85c41ffa861fefa2243be37bdf4 175 Gene3D G3DSA:1.10.1740.10 4 77 1.0E-15 T 11-11-2016 Gferi_RS14235 9637a85c41ffa861fefa2243be37bdf4 175 Pfam PF04542 Sigma-70 region 2 9 69 8.3E-11 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14235 9637a85c41ffa861fefa2243be37bdf4 175 SUPERFAMILY SSF88659 98 166 2.8E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14235 9637a85c41ffa861fefa2243be37bdf4 175 SUPERFAMILY SSF88946 4 88 9.42E-16 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14235 9637a85c41ffa861fefa2243be37bdf4 175 Gene3D G3DSA:1.10.10.10 103 166 2.4E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14235 9637a85c41ffa861fefa2243be37bdf4 175 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 165 5.4E-24 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 SMART SM01134 73 236 3.8E-49 T 11-11-2016 Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 Gene3D G3DSA:1.10.10.10 4 59 1.6E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 Gene3D G3DSA:3.40.50.1360 77 214 6.2E-4 T 11-11-2016 Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 SUPERFAMILY SSF46785 4 62 3.86E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.9E-6 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.9E-6 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 SUPERFAMILY SSF100950 74 236 7.64E-22 T 11-11-2016 Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 Pfam PF00455 DeoR C terminal sensor domain 75 234 4.8E-45 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 SMART SM00420 6 58 2.9E-18 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04470 4d1b535e2af50a7826f85378622d0991 253 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 4.5E-17 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS08155 96cd2d285707bcea84b7a42b142625a4 205 Gene3D G3DSA:3.90.1200.10 74 152 4.3E-6 T 11-11-2016 Gferi_RS08155 96cd2d285707bcea84b7a42b142625a4 205 Pfam PF01163 RIO1 family 8 136 6.7E-6 T 11-11-2016 Gferi_RS08155 96cd2d285707bcea84b7a42b142625a4 205 SUPERFAMILY SSF56112 12 191 1.58E-17 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 SUPERFAMILY SSF47364 83 163 2.09E-21 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 Gene3D G3DSA:1.20.120.140 73 164 4.6E-30 T 11-11-2016 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 SUPERFAMILY SSF52540 182 384 2.24E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 Pfam PF02881 SRP54-type protein, helical bundle domain 101 165 5.5E-12 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 112 383 1.1E-110 T 11-11-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 Gene3D G3DSA:3.40.50.300 180 384 3.0E-80 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 112 384 61.984 T 11-11-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 SMART SM00962 183 384 4.6E-115 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 Pfam PF00448 SRP54-type protein, GTPase domain 184 383 9.6E-80 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 SMART SM00963 88 169 2.0E-23 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 357 370 - T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01535 14933878709511857d2bfdf99af25db8 387 SMART SM00382 182 362 9.5E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS26885 b66609a038a665c216aa26234084a540 231 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 230 48.479 T 11-11-2016 IPR005224 Sugar fermentation stimulation protein Gferi_RS26885 b66609a038a665c216aa26234084a540 231 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 6 228 4.7E-63 T 11-11-2016 IPR005224 Sugar fermentation stimulation protein Gferi_RS26885 b66609a038a665c216aa26234084a540 231 Pfam PF03749 Sugar fermentation stimulation protein 13 220 2.4E-69 T 11-11-2016 IPR005224 Sugar fermentation stimulation protein Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 Pfam PF13091 PLD-like domain 282 426 1.0E-28 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 SUPERFAMILY SSF56024 259 433 1.19E-19 T 11-11-2016 Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 Gene3D G3DSA:3.30.870.10 274 430 1.2E-22 T 11-11-2016 Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 Gene3D G3DSA:3.30.870.10 195 238 3.3E-12 T 11-11-2016 Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 Gene3D G3DSA:3.30.870.10 52 144 3.3E-12 T 11-11-2016 Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 SUPERFAMILY SSF56024 52 150 3.57E-12 T 11-11-2016 Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 SUPERFAMILY SSF56024 190 240 3.57E-12 T 11-11-2016 Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 SMART SM00155 364 394 10.0 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Gferi_RS12130 43182d50514254cfa212a3bea345c03a 462 SMART SM00155 194 220 0.28 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 579 4.9E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 PRINTS PR00344 Bacterial sensor protein C-terminal signature 583 593 4.9E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 615 4.9E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 PRINTS PR00344 Bacterial sensor protein C-terminal signature 621 634 4.9E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 Gene3D G3DSA:3.30.565.10 490 637 5.2E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 Gene3D G3DSA:1.10.287.130 412 476 1.2E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 SUPERFAMILY SSF47384 405 476 1.28E-8 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 Gene3D G3DSA:3.30.450.20 171 287 1.2E-14 T 11-11-2016 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 SUPERFAMILY SSF55874 472 635 5.5E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 529 635 1.3E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 Pfam PF02743 Cache domain 36 277 2.4E-23 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 Gene3D G3DSA:3.30.450.20 92 170 4.5E-14 T 11-11-2016 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 SMART SM00387 528 637 3.9E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 SMART SM00388 415 482 0.0023 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17665 076794c2e5f0c1ce209b6ef7bad3037f 640 Pfam PF00512 His Kinase A (phospho-acceptor) domain 417 476 6.9E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 Gene3D G3DSA:1.10.287.130 186 245 3.1E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 306 414 5.2E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 414 3.6E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 395 3.6E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 370 3.6E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 356 3.6E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 Pfam PF00512 His Kinase A (phospho-acceptor) domain 194 258 9.9E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 Gene3D G3DSA:3.30.565.10 246 415 2.0E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 SMART SM00387 305 417 5.3E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 SUPERFAMILY SSF55874 249 415 6.42E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 SMART SM00388 193 260 1.2E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS12510 99d0798eb9de1d5af3863627b477aebc 418 SUPERFAMILY SSF47384 181 260 4.51E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Gene3D G3DSA:3.40.50.1000 477 520 2.6E-65 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Gene3D G3DSA:3.40.50.1000 633 773 2.6E-65 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 ProSitePatterns PS01047 Heavy-metal-associated domain. 80 109 - T 11-11-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 278 784 2.0E-103 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Gene3D G3DSA:2.70.150.10 237 407 6.6E-38 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Pfam PF00702 haloacid dehalogenase-like hydrolase 502 719 5.0E-49 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 SUPERFAMILY SSF56784 563 812 2.22E-66 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 SUPERFAMILY SSF56784 504 524 2.22E-66 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00943 Copper-transporting ATPase signature 296 314 1.3E-22 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00943 Copper-transporting ATPase signature 739 753 1.3E-22 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00943 Copper-transporting ATPase signature 223 242 1.3E-22 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00943 Copper-transporting ATPase signature 682 699 1.3E-22 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00943 Copper-transporting ATPase signature 276 295 1.3E-22 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00943 Copper-transporting ATPase signature 90 104 1.3E-22 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00943 Copper-transporting ATPase signature 429 443 1.3E-22 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00943 Copper-transporting ATPase signature 489 504 1.3E-22 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 508 514 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 219 815 4.1E-196 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 238 814 3.4E-207 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 630 641 1.6E-30 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 705 724 1.6E-30 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 506 520 1.6E-30 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 356 370 1.6E-30 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 728 740 1.6E-30 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 652 662 1.6E-30 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 77 137 2.9E-17 T 11-11-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 5 67 3.0E-18 T 11-11-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Gene3D G3DSA:3.40.1110.10 521 632 2.9E-28 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 SUPERFAMILY SSF55008 71 143 9.16E-22 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 SUPERFAMILY SSF55008 1 69 1.05E-19 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00942 Copper-transporting ATPase 1 signature 3 28 1.9E-13 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00942 Copper-transporting ATPase 1 signature 166 187 1.9E-13 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00942 Copper-transporting ATPase 1 signature 98 119 1.9E-13 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00942 Copper-transporting ATPase 1 signature 29 52 1.9E-13 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 PRINTS PR00942 Copper-transporting ATPase 1 signature 221 246 1.9E-13 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Pfam PF00403 Heavy-metal-associated domain 79 138 9.0E-19 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Pfam PF00403 Heavy-metal-associated domain 8 66 7.0E-16 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Gene3D G3DSA:3.30.70.100 71 138 3.8E-24 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Gene3D G3DSA:3.30.70.100 1 68 5.9E-23 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 SUPERFAMILY SSF81653 309 406 2.09E-30 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 SUPERFAMILY SSF81665 407 500 2.09E-15 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 SUPERFAMILY SSF81665 754 795 2.09E-15 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 SUPERFAMILY SSF81665 270 310 2.09E-15 T 11-11-2016 Gferi_RS06215 8282f08843dc295faf82eaadf8f8919d 821 Pfam PF00122 E1-E2 ATPase 278 497 9.5E-73 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS14770 db1abdfcde88b691db21a8af71b2952c 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 3.7E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14770 db1abdfcde88b691db21a8af71b2952c 228 Pfam PF00072 Response regulator receiver domain 4 113 3.1E-24 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14770 db1abdfcde88b691db21a8af71b2952c 228 SUPERFAMILY SSF46894 126 227 8.22E-31 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS14770 db1abdfcde88b691db21a8af71b2952c 228 Gene3D G3DSA:3.40.50.2300 2 122 7.3E-35 T 11-11-2016 Gferi_RS14770 db1abdfcde88b691db21a8af71b2952c 228 SUPERFAMILY SSF52172 1 129 2.7E-37 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS14770 db1abdfcde88b691db21a8af71b2952c 228 Gene3D G3DSA:1.10.10.10 127 227 7.3E-37 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14770 db1abdfcde88b691db21a8af71b2952c 228 SMART SM00862 150 226 8.7E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14770 db1abdfcde88b691db21a8af71b2952c 228 SMART SM00448 2 112 2.0E-37 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06695 a9f7f2e64c1a9d3a9433d44080ff940a 268 Gene3D G3DSA:1.10.10.10 9 68 2.8E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06695 a9f7f2e64c1a9d3a9433d44080ff940a 268 Gene3D G3DSA:3.30.450.40 74 249 5.7E-40 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS06695 a9f7f2e64c1a9d3a9433d44080ff940a 268 SUPERFAMILY SSF46785 9 78 5.81E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06695 a9f7f2e64c1a9d3a9433d44080ff940a 268 Pfam PF01614 Bacterial transcriptional regulator 126 247 2.6E-28 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS06695 a9f7f2e64c1a9d3a9433d44080ff940a 268 SUPERFAMILY SSF55781 71 249 4.12E-35 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS06695 a9f7f2e64c1a9d3a9433d44080ff940a 268 Pfam PF09339 IclR helix-turn-helix domain 10 55 7.6E-10 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 3 412 39.589 T 11-11-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 Gene3D G3DSA:3.40.605.10 7 222 2.6E-92 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 Gene3D G3DSA:3.40.605.10 371 412 2.6E-92 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 319 340 - T 11-11-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 Gene3D G3DSA:3.40.309.10 225 370 1.7E-38 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 12 402 2.0E-148 T 11-11-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 SUPERFAMILY SSF53720 8 412 8.77E-109 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 Pfam PF00171 Aldehyde dehydrogenase family 75 282 3.0E-15 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS00540 e482ac939405a7f72690912574e1beaa 413 PIRSF PIRSF000151 1 413 1.7E-172 T 11-11-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Gferi_RS09145 aec47fe953475bd806834c534004528a 347 SUPERFAMILY SSF109604 109 276 4.4E-29 T 11-11-2016 Gferi_RS09145 aec47fe953475bd806834c534004528a 347 SMART SM00471 123 263 5.4E-5 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS09145 aec47fe953475bd806834c534004528a 347 TIGRFAM TIGR00277 HDIG: HDIG domain 124 222 8.9E-10 T 11-11-2016 IPR006675 HDIG domain Gferi_RS09145 aec47fe953475bd806834c534004528a 347 Pfam PF13487 HD domain 183 244 9.4E-15 T 11-11-2016 Gferi_RS09145 aec47fe953475bd806834c534004528a 347 Gene3D G3DSA:1.10.3210.10 105 290 1.2E-22 T 11-11-2016 IPR006674 HD domain Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 SMART SM00448 8 122 4.9E-12 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 136 293 2.5E-42 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 Pfam PF00072 Response regulator receiver domain 11 118 2.8E-18 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 SUPERFAMILY SSF55073 145 293 2.04E-41 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 Gene3D G3DSA:3.30.70.270 142 296 4.6E-44 T 11-11-2016 Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 Gene3D G3DSA:3.40.50.2300 8 137 3.2E-27 T 11-11-2016 Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 SUPERFAMILY SSF52172 9 144 2.85E-25 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 Pfam PF00990 Diguanylate cyclase, GGDEF domain 141 293 2.2E-38 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS17085 a5f27239d2cf10a6609eb032f9f6a906 299 SMART SM00267 129 295 2.0E-48 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Pfam PF00009 Elongation factor Tu GTP binding domain 183 339 6.5E-35 T 11-11-2016 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Gene3D G3DSA:2.40.30.10 579 676 1.5E-36 T 11-11-2016 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Pfam PF11987 Translation-initiation factor 2 463 568 7.7E-39 T 11-11-2016 IPR023115 Translation initiation factor IF- 2, domain 3 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 SUPERFAMILY SSF50447 351 433 2.5E-26 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 95 676 9.5E-264 T 11-11-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 104 152 9.9E-13 T 11-11-2016 IPR006847 Translation initiation factor IF-2, N-terminal Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 2.7E-17 T 11-11-2016 IPR006847 Translation initiation factor IF-2, N-terminal Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 676 17.279 T 11-11-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 SUPERFAMILY SSF50447 579 676 1.08E-31 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 180 337 3.0E-36 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Gene3D G3DSA:2.40.30.10 349 442 4.1E-24 T 11-11-2016 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 ProSitePatterns PS01176 Initiation factor 2 signature. 629 651 - T 11-11-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Gene3D G3DSA:3.40.50.300 171 338 1.8E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 SUPERFAMILY SSF52540 172 351 3.74E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 Gene3D G3DSA:3.40.50.10050 478 557 4.9E-27 T 11-11-2016 IPR023115 Translation initiation factor IF- 2, domain 3 Gferi_RS00720 bdb6fa5bf06b5d65d043e6a58f983b75 677 SUPERFAMILY SSF52156 457 585 4.18E-39 T 11-11-2016 IPR023115 Translation initiation factor IF- 2, domain 3 Gferi_RS25425 9851f55ea954c002b9c546dcd1176259 288 SUPERFAMILY SSF51717 16 281 1.57E-102 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS25425 9851f55ea954c002b9c546dcd1176259 288 Pfam PF00809 Pterin binding enzyme 30 264 8.8E-87 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS25425 9851f55ea954c002b9c546dcd1176259 288 Gene3D G3DSA:3.20.20.20 14 281 1.2E-112 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS25425 9851f55ea954c002b9c546dcd1176259 288 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 63 76 - T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS25425 9851f55ea954c002b9c546dcd1176259 288 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 29 44 - T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS25425 9851f55ea954c002b9c546dcd1176259 288 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 29 278 8.1E-100 T 11-11-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 SUPERFAMILY SSF82714 182 265 2.49E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 SUPERFAMILY SSF82866 297 487 1.11E-39 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 Gene3D G3DSA:1.20.1640.10 302 499 4.9E-49 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 SUPERFAMILY SSF82693 42 129 2.2E-22 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 SUPERFAMILY SSF82866 790 1010 1.44E-46 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.3E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 PRINTS PR00702 Acriflavin resistance protein family signature 534 551 1.3E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.3E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.3E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.3E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.3E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.3E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 Gene3D G3DSA:1.10.3850.10 797 1008 1.5E-54 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 Gene3D G3DSA:3.30.70.1430 42 132 3.2E-24 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 SUPERFAMILY SSF82693 268 315 1.49E-9 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 SUPERFAMILY SSF82693 138 180 1.49E-9 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 Pfam PF00873 AcrB/AcrD/AcrF family 9 1007 6.4E-183 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 SUPERFAMILY SSF82714 708 790 1.31E-13 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 Gene3D G3DSA:3.30.2090.10 708 790 7.7E-15 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 Gene3D G3DSA:3.30.2090.10 181 264 1.7E-14 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 Gene3D G3DSA:3.30.70.1320 143 177 1.4E-5 T 11-11-2016 Gferi_RS11255 81b1661731937728d42a59846bc154f7 1027 Gene3D G3DSA:3.30.70.1320 270 301 1.4E-5 T 11-11-2016 Gferi_RS20290 4097a070b009e217f33c27a8cc80f644 129 SUPERFAMILY SSF46785 6 122 1.36E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20290 4097a070b009e217f33c27a8cc80f644 129 Pfam PF03965 Penicillinase repressor 8 121 4.7E-33 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS20290 4097a070b009e217f33c27a8cc80f644 129 PIRSF PIRSF019455 1 129 2.7E-35 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS20290 4097a070b009e217f33c27a8cc80f644 129 Gene3D G3DSA:1.10.10.10 4 81 1.0E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06885 1e5da73b825dee5b24922cd6721e46dc 304 Pfam PF03407 Nucleotide-diphospho-sugar transferase 35 171 3.2E-5 T 11-11-2016 IPR005069 Nucleotide-diphospho-sugar transferase Gferi_RS06885 1e5da73b825dee5b24922cd6721e46dc 304 SUPERFAMILY SSF53448 6 244 2.08E-20 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06885 1e5da73b825dee5b24922cd6721e46dc 304 Gene3D G3DSA:3.90.550.10 9 215 6.2E-5 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS24410 b84024615efaa1f538cea9a11c6cabe0 349 Pfam PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) 3 349 1.7E-173 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS24410 b84024615efaa1f538cea9a11c6cabe0 349 ProSitePatterns PS00104 EPSP synthase signature 1. 135 149 - T 11-11-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS24410 b84024615efaa1f538cea9a11c6cabe0 349 TIGRFAM TIGR01918 various_sel_PB: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family 5 349 2.9E-175 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 SMART SM00257 206 252 6.3E-10 T 11-11-2016 IPR018392 LysM domain Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 Pfam PF01551 Peptidase family M23 365 459 2.4E-35 T 11-11-2016 IPR016047 Peptidase M23 Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 SUPERFAMILY SSF51261 269 462 9.94E-58 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 Gene3D G3DSA:3.10.350.10 205 248 1.9E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 Pfam PF07501 G5 domain 265 335 3.2E-17 T 11-11-2016 IPR011098 G5 domain Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 Pfam PF01476 LysM domain 207 247 4.3E-9 T 11-11-2016 IPR018392 LysM domain Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 Gene3D G3DSA:2.70.70.10 336 464 2.6E-50 T 11-11-2016 Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 SMART SM01208 257 336 1.6E-16 T 11-11-2016 IPR011098 G5 domain Gferi_RS13750 45d82a15fae1eeb95f620b86d4641112 465 SUPERFAMILY SSF54106 205 249 1.83E-8 T 11-11-2016 IPR018392 LysM domain Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 SUPERFAMILY SSF53067 113 325 3.35E-43 T 11-11-2016 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 88 108 3.5E-48 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 109 128 3.5E-48 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 166 187 3.5E-48 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 277 286 3.5E-48 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 16 29 3.5E-48 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 143 155 3.5E-48 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 Gene3D G3DSA:3.30.420.40 14 171 4.9E-48 T 11-11-2016 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 13 345 62.245 T 11-11-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 16 320 1.9E-110 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 16 326 1.1E-134 T 11-11-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 Pfam PF00814 Glycoprotease family 35 320 1.8E-101 T 11-11-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 SUPERFAMILY SSF53067 15 134 8.42E-32 T 11-11-2016 Gferi_RS10560 bed049029b742cb63c7573ee565cc34a 355 ProSitePatterns PS01016 Glycoprotease family signature. 108 128 - T 11-11-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618|Reactome: R-HSA-6782315 Gferi_RS18725 57840f8513a10c22e250f4291f3cb69f 108 SUPERFAMILY SSF54913 1 106 1.24E-28 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta Gferi_RS18725 57840f8513a10c22e250f4291f3cb69f 108 Pfam PF00543 Nitrogen regulatory protein P-II 4 104 1.1E-26 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18725 57840f8513a10c22e250f4291f3cb69f 108 Gene3D G3DSA:3.30.70.120 1 106 1.7E-30 T 11-11-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Gferi_RS18725 57840f8513a10c22e250f4291f3cb69f 108 SMART SM00938 4 104 4.1E-40 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18725 57840f8513a10c22e250f4291f3cb69f 108 PRINTS PR00340 P-II protein signature 82 102 3.6E-19 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18725 57840f8513a10c22e250f4291f3cb69f 108 PRINTS PR00340 P-II protein signature 23 41 3.6E-19 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18725 57840f8513a10c22e250f4291f3cb69f 108 PRINTS PR00340 P-II protein signature 2 17 3.6E-19 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS25625 4081cec1c48c4ee0dd275d40a03b1feb 345 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 11-11-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Gferi_RS25625 4081cec1c48c4ee0dd275d40a03b1feb 345 SUPERFAMILY SSF51735 141 311 8.79E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25625 4081cec1c48c4ee0dd275d40a03b1feb 345 Gene3D G3DSA:3.40.50.720 170 289 1.7E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25625 4081cec1c48c4ee0dd275d40a03b1feb 345 Pfam PF00107 Zinc-binding dehydrogenase 177 307 1.3E-25 T 11-11-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Gferi_RS25625 4081cec1c48c4ee0dd275d40a03b1feb 345 SMART SM00829 14 317 0.0022 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Gferi_RS25625 4081cec1c48c4ee0dd275d40a03b1feb 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 128 7.0E-28 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Gferi_RS25625 4081cec1c48c4ee0dd275d40a03b1feb 345 Gene3D G3DSA:3.90.180.10 4 169 7.3E-53 T 11-11-2016 IPR011032 GroES-like Gferi_RS25625 4081cec1c48c4ee0dd275d40a03b1feb 345 SUPERFAMILY SSF50129 4 176 3.5E-51 T 11-11-2016 IPR011032 GroES-like Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 Gene3D G3DSA:3.40.50.720 1 148 5.7E-52 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 3.4E-18 T 11-11-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 Pfam PF01842 ACT domain 349 408 5.2E-11 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 SUPERFAMILY SSF51735 1 158 3.94E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 Gene3D G3DSA:3.30.70.260 348 418 1.6E-6 T 11-11-2016 Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 Gene3D G3DSA:3.30.360.10 149 299 9.8E-60 T 11-11-2016 Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 SUPERFAMILY SSF55021 348 418 2.64E-12 T 11-11-2016 Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 SUPERFAMILY SSF55347 137 302 1.11E-57 T 11-11-2016 Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 Pfam PF00742 Homoserine dehydrogenase 137 315 2.2E-68 T 11-11-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 PIRSF PIRSF000098 1 428 1.4E-171 T 11-11-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Gferi_RS22905 825bdb6d2c59e272c2e898d3d15e8579 429 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 11-11-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SUPERFAMILY SSF47413 5 64 2.06E-11 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00530 9 63 4.8E-8 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SUPERFAMILY SSF48452 324 431 2.17E-14 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 Pfam PF13424 Tetratricopeptide repeat 358 427 8.6E-8 T 11-11-2016 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 Pfam PF13424 Tetratricopeptide repeat 119 181 5.6E-8 T 11-11-2016 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 Pfam PF13424 Tetratricopeptide repeat 238 308 4.0E-13 T 11-11-2016 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 Gene3D G3DSA:1.10.260.40 6 91 5.4E-14 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 Pfam PF12844 Helix-turn-helix domain 7 64 1.2E-8 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 Gene3D G3DSA:1.25.40.10 296 428 1.9E-19 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SUPERFAMILY SSF48452 77 187 7.59E-12 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 Gene3D G3DSA:1.25.40.10 92 167 6.6E-9 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 Gene3D G3DSA:1.25.40.10 168 295 6.4E-17 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 396 429 0.35 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 316 349 270.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 277 310 0.0023 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 237 270 0.84 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 197 230 40.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 155 188 19.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 356 389 9.8 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 115 148 0.035 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SMART SM00028 75 108 210.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS13395 1f0bac009dbe8b7a1c0c380ebc2be930 434 SUPERFAMILY SSF48452 153 345 4.88E-23 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS08565 093e518e45dd111401b884c0e64c0f1f 191 Pfam PF02441 Flavoprotein 2 135 1.8E-32 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS08565 093e518e45dd111401b884c0e64c0f1f 191 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 191 35.471 T 11-11-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 Gferi_RS08565 093e518e45dd111401b884c0e64c0f1f 191 SUPERFAMILY SSF52507 2 191 7.98E-59 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS08565 093e518e45dd111401b884c0e64c0f1f 191 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 189 9.9E-68 T 11-11-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 Gferi_RS08565 093e518e45dd111401b884c0e64c0f1f 191 Gene3D G3DSA:3.40.50.1950 2 191 1.8E-71 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS23260 ad3d0475f56765d1e0d47f161c0883e9 741 SUPERFAMILY SSF51998 3 740 8.85E-290 T 11-11-2016 Gferi_RS23260 ad3d0475f56765d1e0d47f161c0883e9 741 ProSitePatterns PS00850 Glycine radical domain signature. 711 719 - T 11-11-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Gferi_RS23260 ad3d0475f56765d1e0d47f161c0883e9 741 Pfam PF02901 Pyruvate formate lyase-like 13 600 2.7E-209 T 11-11-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 Gferi_RS23260 ad3d0475f56765d1e0d47f161c0883e9 741 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 3 741 0.0 T 11-11-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 Gferi_RS23260 ad3d0475f56765d1e0d47f161c0883e9 741 PIRSF PIRSF000379 1 741 0.0 T 11-11-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 Gferi_RS23260 ad3d0475f56765d1e0d47f161c0883e9 741 Gene3D G3DSA:3.20.70.20 3 740 0.0 T 11-11-2016 Gferi_RS23260 ad3d0475f56765d1e0d47f161c0883e9 741 Pfam PF01228 Glycine radical 616 722 2.1E-45 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 Gferi_RS11865 b210daa166a03fb268bbd241525ecc79 366 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 11 361 4.1E-64 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS11865 b210daa166a03fb268bbd241525ecc79 366 Pfam PF03845 Spore germination protein 7 324 2.4E-55 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS16830 1b093fa829506d6b00916378c9150d10 246 Gene3D G3DSA:3.40.50.410 133 224 4.5E-8 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS16830 1b093fa829506d6b00916378c9150d10 246 Pfam PF00092 von Willebrand factor type A domain 7 64 2.2E-5 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS16830 1b093fa829506d6b00916378c9150d10 246 SUPERFAMILY SSF53300 6 74 7.56E-8 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS16830 1b093fa829506d6b00916378c9150d10 246 Pfam PF13519 von Willebrand factor type A domain 134 226 5.0E-10 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS16830 1b093fa829506d6b00916378c9150d10 246 Gene3D G3DSA:3.40.50.410 7 77 9.0E-6 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS16830 1b093fa829506d6b00916378c9150d10 246 SUPERFAMILY SSF53300 133 224 1.93E-15 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS11400 623420d07494bcac767b322ae90ec887 389 Pfam PF13533 Biotin-lipoyl like 63 108 2.3E-6 T 11-11-2016 Gferi_RS11400 623420d07494bcac767b322ae90ec887 389 SUPERFAMILY SSF111369 50 310 4.32E-23 T 11-11-2016 Gferi_RS11400 623420d07494bcac767b322ae90ec887 389 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 385 1.4E-60 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 Gferi_RS11400 623420d07494bcac767b322ae90ec887 389 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 194 304 7.9E-18 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS11400 623420d07494bcac767b322ae90ec887 389 Gene3D G3DSA:2.40.50.100 199 230 2.6E-9 T 11-11-2016 Gferi_RS11400 623420d07494bcac767b322ae90ec887 389 Gene3D G3DSA:2.40.50.100 64 95 2.6E-9 T 11-11-2016 Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 SMART SM00382 511 712 4.3E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 Pfam PF00005 ABC transporter 502 649 8.6E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 SUPERFAMILY SSF90123 4 41 4.58E-71 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 SUPERFAMILY SSF90123 193 465 4.58E-71 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 Gene3D G3DSA:1.20.1560.10 4 51 3.6E-60 T 11-11-2016 Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 Gene3D G3DSA:1.20.1560.10 199 465 3.6E-60 T 11-11-2016 Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 ProSitePatterns PS00211 ABC transporters family signature. 623 637 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 Pfam PF00664 ABC transporter transmembrane region 194 438 6.6E-36 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 SUPERFAMILY SSF52540 476 721 1.78E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06775 98b7cd5043695024ec7ab7b198788a19 729 Gene3D G3DSA:3.40.50.300 484 715 1.6E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06130 b91bf77e1b9e8a21773199c7c5f8663d 135 SUPERFAMILY SSF102712 2 126 7.45E-30 T 11-11-2016 Gferi_RS06130 b91bf77e1b9e8a21773199c7c5f8663d 135 Gene3D G3DSA:3.40.140.10 2 129 2.7E-33 T 11-11-2016 Gferi_RS06130 b91bf77e1b9e8a21773199c7c5f8663d 135 Pfam PF14464 Prokaryotic homologs of the JAB domain 6 110 5.8E-24 T 11-11-2016 IPR028090 JAB domain, prokaryotic Gferi_RS06130 b91bf77e1b9e8a21773199c7c5f8663d 135 SMART SM00232 1 132 1.7E-10 T 11-11-2016 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 Gferi_RS15990 2eb3e8c5e1595e38c5a35acc449dccee 194 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 177 8.5E-25 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS15990 2eb3e8c5e1595e38c5a35acc449dccee 194 Pfam PF04542 Sigma-70 region 2 22 90 3.7E-10 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS15990 2eb3e8c5e1595e38c5a35acc449dccee 194 SUPERFAMILY SSF88946 2 93 5.76E-13 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS15990 2eb3e8c5e1595e38c5a35acc449dccee 194 Gene3D G3DSA:1.10.10.10 117 181 8.7E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15990 2eb3e8c5e1595e38c5a35acc449dccee 194 Gene3D G3DSA:1.10.1740.10 2 93 4.7E-13 T 11-11-2016 Gferi_RS15990 2eb3e8c5e1595e38c5a35acc449dccee 194 SUPERFAMILY SSF88659 113 180 7.29E-13 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS15990 2eb3e8c5e1595e38c5a35acc449dccee 194 Pfam PF08281 Sigma-70, region 4 126 176 2.5E-13 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 Gene3D G3DSA:3.30.360.10 137 260 4.0E-58 T 11-11-2016 Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 SUPERFAMILY SSF51735 2 148 1.9E-25 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 SMART SM00859 5 116 7.6E-6 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 PIRSF PIRSF015689 1 289 5.9E-121 T 11-11-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 Gene3D G3DSA:3.40.50.720 1 136 5.9E-60 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 289 113.303 T 11-11-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 124 260 1.4E-57 T 11-11-2016 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 114 1.7E-12 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 3 285 4.0E-134 T 11-11-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 Gferi_RS17975 34dcec310dc8c1d53b0e8827a4c13442 289 SUPERFAMILY SSF55347 124 261 7.85E-55 T 11-11-2016 Gferi_RS24350 9623344ee3eca62b6f2c33d2d225571d 153 Pfam PF13690 Chemotaxis phosphatase CheX 42 137 6.2E-20 T 11-11-2016 IPR028051 Chemotaxis phosphatase CheX-like domain Gferi_RS24350 9623344ee3eca62b6f2c33d2d225571d 153 SUPERFAMILY SSF103039 1 151 1.03E-36 T 11-11-2016 IPR028976 CheC-like domain Gferi_RS24350 9623344ee3eca62b6f2c33d2d225571d 153 Gene3D G3DSA:3.40.1550.10 1 153 5.0E-44 T 11-11-2016 IPR028976 CheC-like domain Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 SUPERFAMILY SSF52540 135 381 1.71E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 SUPERFAMILY SSF52172 1 181 1.42E-41 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 SMART SM00448 1 112 3.6E-36 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 Gene3D G3DSA:1.10.10.60 383 442 5.5E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 Gene3D G3DSA:3.40.50.300 133 310 3.9E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 Gene3D G3DSA:3.40.50.2300 1 130 4.6E-35 T 11-11-2016 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 Gene3D G3DSA:1.10.8.60 311 382 2.1E-23 T 11-11-2016 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 Pfam PF00158 Sigma-54 interaction domain 136 304 1.2E-63 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 SUPERFAMILY SSF46689 351 442 8.66E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 Pfam PF02954 Bacterial regulatory protein, Fis family 400 440 2.5E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 423 443 4.8E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 406 423 4.8E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 SMART SM00382 158 301 8.4E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25880 a37ac0db161947612b4da75321a153e5 444 Pfam PF00072 Response regulator receiver domain 4 112 1.7E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 Gene3D G3DSA:3.30.450.20 97 155 1.1E-7 T 11-11-2016 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 SMART SM00283 382 665 2.4E-33 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 Gene3D G3DSA:1.10.287.950 419 616 7.1E-41 T 11-11-2016 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 Gene3D G3DSA:1.10.287.950 339 418 2.7E-4 T 11-11-2016 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 SUPERFAMILY SSF58104 335 362 1.83E-54 T 11-11-2016 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 SUPERFAMILY SSF58104 395 665 1.83E-54 T 11-11-2016 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 Pfam PF00672 HAMP domain 286 356 1.2E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 SMART SM00304 305 360 1.1E-5 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 Gene3D G3DSA:3.30.450.20 156 281 4.8E-25 T 11-11-2016 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 SUPERFAMILY SSF103190 121 171 1.49E-8 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 457 664 2.5E-30 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS06815 2365664bca06fb0b86bbc993dce8a5fb 666 Pfam PF02743 Cache domain 38 267 3.5E-32 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS02825 e716c3e50c10d1ad46edea93316cf0de 214 SMART SM00793 3 196 4.0E-16 T 11-11-2016 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 Gferi_RS02825 e716c3e50c10d1ad46edea93316cf0de 214 Pfam PF04647 Accessory gene regulator B 7 187 2.8E-37 T 11-11-2016 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 Gferi_RS24090 6d59aaa9ee313dc0351c460ea638dc25 575 Pfam PF17159 Membrane-associated sensor domain 67 291 5.2E-60 T 11-11-2016 IPR033425 Membrane-associated sensor domain MASE3 Gferi_RS24090 6d59aaa9ee313dc0351c460ea638dc25 575 SMART SM00331 349 575 1.9E-19 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS24090 6d59aaa9ee313dc0351c460ea638dc25 575 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 376 574 9.1E-28 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 53 502 4.4E-131 T 11-11-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 72 79 - T 11-11-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 Gene3D G3DSA:3.40.50.1980 197 305 5.5E-43 T 11-11-2016 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 142 156 - T 11-11-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 21 511 6.4E-183 T 11-11-2016 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 Gene3D G3DSA:3.40.50.1980 333 375 3.2E-56 T 11-11-2016 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 Gene3D G3DSA:3.40.50.1980 427 525 3.2E-56 T 11-11-2016 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 Gene3D G3DSA:3.40.50.1980 6 153 4.9E-63 T 11-11-2016 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 7 517 1.7E-205 T 11-11-2016 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Gferi_RS18735 54d368f8657cf8510fcdfe7032745ed3 534 SUPERFAMILY SSF53807 5 519 1.31E-162 T 11-11-2016 Gferi_RS04525 4fb958210baed92fac1e77fa981572fa 225 SUPERFAMILY SSF51569 1 217 1.15E-65 T 11-11-2016 Gferi_RS04525 4fb958210baed92fac1e77fa981572fa 225 Pfam PF00923 Transaldolase 4 202 1.3E-48 T 11-11-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 Gferi_RS04525 4fb958210baed92fac1e77fa981572fa 225 Gene3D G3DSA:3.20.20.70 1 215 3.3E-60 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS04525 4fb958210baed92fac1e77fa981572fa 225 ProSitePatterns PS00958 Transaldolase active site. 83 100 - T 11-11-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 Gferi_RS04525 4fb958210baed92fac1e77fa981572fa 225 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 11-11-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 Gferi_RS14450 e4abedca7147a2719428aa32abb3de4a 184 Gene3D G3DSA:2.60.120.10 106 183 2.2E-30 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS14450 e4abedca7147a2719428aa32abb3de4a 184 SUPERFAMILY SSF51182 59 183 5.09E-26 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS14450 e4abedca7147a2719428aa32abb3de4a 184 SUPERFAMILY SSF47413 4 71 1.1E-15 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS14450 e4abedca7147a2719428aa32abb3de4a 184 Gene3D G3DSA:1.10.260.40 8 105 3.4E-22 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS14450 e4abedca7147a2719428aa32abb3de4a 184 Pfam PF01381 Helix-turn-helix 12 63 3.7E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS14450 e4abedca7147a2719428aa32abb3de4a 184 Pfam PF07883 Cupin domain 111 176 2.1E-13 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS14450 e4abedca7147a2719428aa32abb3de4a 184 SMART SM00530 11 66 3.3E-12 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS03760 39508281dfd80def0c333de9224ca56c 244 Gene3D G3DSA:3.40.50.300 3 239 3.3E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03760 39508281dfd80def0c333de9224ca56c 244 SUPERFAMILY SSF52540 4 239 1.03E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03760 39508281dfd80def0c333de9224ca56c 244 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 14 132 1.0E-5 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Gferi_RS18450 e2ec76fce63076adef5ede38d0652d93 327 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 6 256 1.8E-58 T 11-11-2016 IPR008275 CoA enzyme activase Gferi_RS18450 e2ec76fce63076adef5ede38d0652d93 327 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 6 257 2.9E-50 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Gferi_RS18450 e2ec76fce63076adef5ede38d0652d93 327 Gene3D G3DSA:3.30.420.40 100 239 1.6E-52 T 11-11-2016 Gferi_RS18450 e2ec76fce63076adef5ede38d0652d93 327 Gene3D G3DSA:3.30.420.40 1 83 2.0E-6 T 11-11-2016 Gferi_RS18450 e2ec76fce63076adef5ede38d0652d93 327 SUPERFAMILY SSF53067 5 257 2.48E-42 T 11-11-2016 Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 SMART SM00387 472 582 3.2E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 SUPERFAMILY SSF47384 357 432 1.41E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 Gene3D G3DSA:3.30.565.10 436 579 7.8E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 560 4.7E-9 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 540 4.7E-9 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 526 4.7E-9 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 579 8.3E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 Gene3D G3DSA:3.30.450.20 157 303 7.4E-9 T 11-11-2016 Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 Gene3D G3DSA:1.10.287.130 361 423 6.2E-5 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 SUPERFAMILY SSF55874 429 580 5.24E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 Pfam PF02743 Cache domain 47 253 7.8E-15 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS16270 95cbc69b064351a286a3cb20553b680a 588 SMART SM00388 362 432 8.4E-5 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 SUPERFAMILY SSF81296 39 97 7.28E-8 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 Gene3D G3DSA:2.60.40.10 14 121 1.7E-35 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 Gene3D G3DSA:2.60.40.1180 525 628 6.6E-33 T 11-11-2016 IPR013780 Glycosyl hydrolase, all-beta Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 2 629 43.832 T 11-11-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 Pfam PF00128 Alpha amylase, catalytic domain 177 249 2.8E-10 T 11-11-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 26 108 2.0E-21 T 11-11-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 SMART SM00642 152 492 1.1E-6 T 11-11-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 SUPERFAMILY SSF51445 83 519 4.8E-111 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 10 627 2.3E-277 T 11-11-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 Gene3D G3DSA:3.20.20.80 147 513 2.5E-90 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 SUPERFAMILY SSF51011 526 630 1.41E-31 T 11-11-2016 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 530 628 2.0E-17 T 11-11-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 Gferi_RS20660 a677ca97dd421f699ac0d726d50285a3 639 PIRSF PIRSF000463 1 639 3.2E-282 T 11-11-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Gferi_RS14670 258bb2965f1bb398b460dabdaf6ef26e 507 Gene3D G3DSA:1.10.275.10 7 193 5.9E-58 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal Gferi_RS14670 258bb2965f1bb398b460dabdaf6ef26e 507 Gene3D G3DSA:1.20.200.10 195 504 6.8E-100 T 11-11-2016 Gferi_RS14670 258bb2965f1bb398b460dabdaf6ef26e 507 SUPERFAMILY SSF48557 7 497 1.49E-152 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 Gferi_RS14670 258bb2965f1bb398b460dabdaf6ef26e 507 Pfam PF00221 Aromatic amino acid lyase 11 466 4.1E-155 T 11-11-2016 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 SUPERFAMILY SSF46955 4 115 6.41E-15 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 SUPERFAMILY SSF46955 127 204 7.33E-18 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 Pfam PF13411 MerR HTH family regulatory protein 128 192 5.7E-16 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 Gene3D G3DSA:1.10.1660.10 128 243 1.4E-22 T 11-11-2016 Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 Gene3D G3DSA:1.10.1660.10 4 116 1.6E-17 T 11-11-2016 Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 Pfam PF00376 MerR family regulatory protein 6 42 8.5E-13 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 29 - T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 SMART SM00422 125 193 5.9E-11 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS21760 51c1fada55c9690b2e7304428e7018d9 246 SMART SM00422 4 66 2.6E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS14480 0f4c406b0ab2484ffedb991399153e55 172 SUPERFAMILY SSF55469 1 172 6.41E-49 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS14480 0f4c406b0ab2484ffedb991399153e55 172 Gene3D G3DSA:3.40.109.10 1 172 2.3E-50 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS14480 0f4c406b0ab2484ffedb991399153e55 172 Pfam PF00881 Nitroreductase family 8 62 3.4E-13 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 240 349 1.5E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 SMART SM00388 130 196 1.4E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 SUPERFAMILY SSF55874 185 350 1.83E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 330 2.5E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 PRINTS PR00344 Bacterial sensor protein C-terminal signature 277 291 2.5E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 PRINTS PR00344 Bacterial sensor protein C-terminal signature 295 305 2.5E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 PRINTS PR00344 Bacterial sensor protein C-terminal signature 336 349 2.5E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 Gene3D G3DSA:1.10.287.130 122 191 2.2E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 196 5.0E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 SMART SM00387 240 350 1.1E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 Gene3D G3DSA:3.30.565.10 204 349 5.6E-48 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07960 fe23782ec1bd4e9c3405c8877740cb70 350 SUPERFAMILY SSF47384 115 196 4.51E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 5 1171 0.0 T 11-11-2016 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 SUPERFAMILY SSF52922 260 413 7.07E-48 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 689 700 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 SUPERFAMILY SSF53323 415 668 1.03E-91 T 11-11-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 269 374 1.1E-16 T 11-11-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Gene3D G3DSA:3.40.50.970 787 1172 6.1E-151 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Gene3D G3DSA:3.30.70.20 672 782 1.1E-18 T 11-11-2016 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 957 1069 1.0E-9 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 19 247 6.0E-80 T 11-11-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Gene3D G3DSA:3.40.50.970 3 258 3.4E-113 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Gene3D G3DSA:3.40.50.920 259 413 1.1E-63 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 SUPERFAMILY SSF52518 787 1174 2.21E-132 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 SUPERFAMILY SSF54862 665 831 4.74E-19 T 11-11-2016 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Pfam PF10371 Domain of unknown function 630 678 3.0E-24 T 11-11-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 PIRSF PIRSF000159 1 1174 0.0 T 11-11-2016 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 425 608 5.9E-34 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Gene3D G3DSA:4.10.780.10 629 668 7.7E-18 T 11-11-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Gene3D G3DSA:3.40.920.10 416 624 2.4E-90 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 SUPERFAMILY SSF52518 3 258 5.0E-78 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 SMART SM00890 621 679 4.7E-31 T 11-11-2016 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Gferi_RS13140 2d576085f94b232ccd78ac8fe701804b 1174 Pfam PF12838 4Fe-4S dicluster domain 688 757 1.2E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS09160 30df0f7b380913cad1184fef03efcd6b 234 SMART SM00448 4 114 5.8E-48 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS09160 30df0f7b380913cad1184fef03efcd6b 234 Pfam PF00072 Response regulator receiver domain 6 114 2.3E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS09160 30df0f7b380913cad1184fef03efcd6b 234 Gene3D G3DSA:3.40.50.2300 2 127 1.9E-44 T 11-11-2016 Gferi_RS09160 30df0f7b380913cad1184fef03efcd6b 234 Gene3D G3DSA:1.10.10.10 128 225 1.7E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09160 30df0f7b380913cad1184fef03efcd6b 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 223 4.0E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS09160 30df0f7b380913cad1184fef03efcd6b 234 SUPERFAMILY SSF46894 127 224 4.79E-29 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS09160 30df0f7b380913cad1184fef03efcd6b 234 SMART SM00862 150 223 9.8E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS09160 30df0f7b380913cad1184fef03efcd6b 234 SUPERFAMILY SSF52172 2 123 1.14E-43 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 ProSitePatterns PS00938 Initiation factor 3 signature. 64 77 - T 11-11-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 13 175 2.1E-64 T 11-11-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 SUPERFAMILY SSF55200 88 175 2.49E-30 T 11-11-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 SUPERFAMILY SSF54364 12 84 4.71E-29 T 11-11-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 89 174 4.8E-33 T 11-11-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 13 82 1.2E-32 T 11-11-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 Gene3D G3DSA:3.10.20.80 9 84 2.6E-35 T 11-11-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 Gene3D G3DSA:3.30.110.10 85 175 2.7E-34 T 11-11-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Gferi_RS04095 d161a082acaa814d2c8eaa83a53d439d 176 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 7 176 29.725 T 11-11-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Gferi_RS20490 20b2e31e94d162034e155efb756a4791 116 SUPERFAMILY SSF50118 2 113 1.64E-43 T 11-11-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor Gferi_RS20490 20b2e31e94d162034e155efb756a4791 116 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 4 111 5.1E-35 T 11-11-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 Gferi_RS20490 20b2e31e94d162034e155efb756a4791 116 PIRSF PIRSF033490 1 113 2.2E-39 T 11-11-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 Gferi_RS20490 20b2e31e94d162034e155efb756a4791 116 Gene3D G3DSA:2.30.30.110 2 113 2.9E-50 T 11-11-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor Gferi_RS16085 6f3cc35fe590ef333177f686982d1d68 381 Gene3D G3DSA:3.40.350.10 1 148 2.4E-19 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS16085 6f3cc35fe590ef333177f686982d1d68 381 Gene3D G3DSA:3.90.230.10 155 378 3.1E-49 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS16085 6f3cc35fe590ef333177f686982d1d68 381 SUPERFAMILY SSF53092 1 149 3.31E-16 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal Gferi_RS16085 6f3cc35fe590ef333177f686982d1d68 381 Pfam PF01321 Creatinase/Prolidase N-terminal domain 1 149 9.9E-16 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS16085 6f3cc35fe590ef333177f686982d1d68 381 Pfam PF00557 Metallopeptidase family M24 164 367 2.1E-32 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS16085 6f3cc35fe590ef333177f686982d1d68 381 SUPERFAMILY SSF55920 155 376 7.2E-49 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS22115 cb4a2c3cb6b54661112a87b8f7af1d9f 482 Pfam PF02687 FtsX-like permease family 320 474 9.8E-33 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS00705 0e6e0355030c26774a7430e54074cb31 297 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 171 229 6.3E-15 T 11-11-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 Gferi_RS00705 0e6e0355030c26774a7430e54074cb31 297 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 233 286 5.1E-5 T 11-11-2016 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS00705 0e6e0355030c26774a7430e54074cb31 297 Gene3D G3DSA:2.30.130.10 229 288 1.8E-6 T 11-11-2016 IPR015947 PUA-like domain Gferi_RS00705 0e6e0355030c26774a7430e54074cb31 297 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 1 209 1.2E-77 T 11-11-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS00705 0e6e0355030c26774a7430e54074cb31 297 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 23 170 3.4E-60 T 11-11-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 Gferi_RS00705 0e6e0355030c26774a7430e54074cb31 297 SUPERFAMILY SSF55120 1 229 2.39E-81 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS00705 0e6e0355030c26774a7430e54074cb31 297 SUPERFAMILY SSF88697 233 289 3.53E-6 T 11-11-2016 IPR015947 PUA-like domain Gferi_RS00705 0e6e0355030c26774a7430e54074cb31 297 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 296 18.505 T 11-11-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 SMART SM00984 320 425 1.3E-40 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 321 424 6.5E-30 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 SUPERFAMILY SSF52413 306 436 1.7E-33 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 297 1.5E-36 T 11-11-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 Gene3D G3DSA:1.20.5.100 208 235 5.1E-18 T 11-11-2016 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 PIRSF PIRSF500134 2 440 6.7E-176 T 11-11-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 421 4.2E-141 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 SUPERFAMILY SSF48179 205 303 3.06E-31 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 188 1.4E-70 T 11-11-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 PIRSF PIRSF000124 2 440 4.3E-142 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 Gene3D G3DSA:3.40.50.720 236 440 1.6E-67 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 Gene3D G3DSA:3.40.50.720 3 207 1.6E-78 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19550 b24385a9a15f4889213fa711ba60654b 440 SUPERFAMILY SSF51735 2 191 2.78E-54 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11700 1bc0f1987a300e75d81c4b41c508a754 477 SUPERFAMILY SSF53187 299 475 2.61E-46 T 11-11-2016 Gferi_RS11700 1bc0f1987a300e75d81c4b41c508a754 477 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 20 285 4.4E-44 T 11-11-2016 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 Gferi_RS11700 1bc0f1987a300e75d81c4b41c508a754 477 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 302 471 2.0E-42 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS11700 1bc0f1987a300e75d81c4b41c508a754 477 Gene3D G3DSA:3.40.630.40 299 475 1.4E-49 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS11700 1bc0f1987a300e75d81c4b41c508a754 477 TIGRFAM TIGR02870 spore_II_D: stage II sporulation protein D 3 286 2.7E-70 T 11-11-2016 IPR014225 Sporulation stage II, protein D firmicutes Gferi_RS11700 1bc0f1987a300e75d81c4b41c508a754 477 Pfam PF08486 Stage II sporulation protein 14 119 2.0E-12 T 11-11-2016 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal Gferi_RS11700 1bc0f1987a300e75d81c4b41c508a754 477 SMART SM00646 361 471 4.1E-31 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS01765 9777cd1c7cc4f6153830e08ca5e93b1a 309 Pfam PF01479 S4 domain 16 62 1.0E-9 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS01765 9777cd1c7cc4f6153830e08ca5e93b1a 309 SMART SM00363 15 80 2.8E-11 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS01765 9777cd1c7cc4f6153830e08ca5e93b1a 309 SUPERFAMILY SSF55174 15 102 2.16E-11 T 11-11-2016 Gferi_RS01765 9777cd1c7cc4f6153830e08ca5e93b1a 309 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 11-11-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS01765 9777cd1c7cc4f6153830e08ca5e93b1a 309 SUPERFAMILY SSF55120 74 303 4.11E-78 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS01765 9777cd1c7cc4f6153830e08ca5e93b1a 309 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 12 301 8.7E-103 T 11-11-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS01765 9777cd1c7cc4f6153830e08ca5e93b1a 309 Gene3D G3DSA:3.10.290.10 15 65 3.5E-14 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS01765 9777cd1c7cc4f6153830e08ca5e93b1a 309 Pfam PF00849 RNA pseudouridylate synthase 89 243 1.6E-35 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS18080 f83fc2a9e3541b65ecb1a163f7c4c39d 270 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 37 155 7.7E-35 T 11-11-2016 IPR007621 TPM domain Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 SMART SM00839 184 415 7.7E-117 T 11-11-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 SUPERFAMILY SSF53223 5 184 2.49E-66 T 11-11-2016 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 93 107 2.3E-36 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 173 195 2.3E-36 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 215 235 2.3E-36 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 343 354 2.3E-36 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 Gene3D G3DSA:3.40.192.10 39 179 1.5E-55 T 11-11-2016 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 Gene3D G3DSA:3.40.50.720 182 416 2.5E-90 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 182 415 1.5E-82 T 11-11-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 101 114 - T 11-11-2016 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-70614 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 38 163 6.7E-52 T 11-11-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 SUPERFAMILY SSF51735 182 417 8.28E-84 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00050 9697c60129781ede75a71a06fc8982bf 417 PIRSF PIRSF000185 3 417 5.7E-166 T 11-11-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 Gferi_RS13690 1c2197ccab826bff6e7e05712aaab5f6 443 SUPERFAMILY SSF48024 6 118 3.14E-36 T 11-11-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Gferi_RS13690 1c2197ccab826bff6e7e05712aaab5f6 443 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 8 439 3.7E-185 T 11-11-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Gferi_RS13690 1c2197ccab826bff6e7e05712aaab5f6 443 Pfam PF03796 DnaB-like helicase C terminal domain 183 437 1.6E-117 T 11-11-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Gferi_RS13690 1c2197ccab826bff6e7e05712aaab5f6 443 Gene3D G3DSA:3.40.50.300 168 439 8.5E-108 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13690 1c2197ccab826bff6e7e05712aaab5f6 443 Gene3D G3DSA:1.10.860.10 8 110 3.9E-37 T 11-11-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Gferi_RS13690 1c2197ccab826bff6e7e05712aaab5f6 443 SUPERFAMILY SSF52540 181 430 3.84E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13690 1c2197ccab826bff6e7e05712aaab5f6 443 Pfam PF00772 DnaB-like helicase N terminal domain 8 109 1.5E-34 T 11-11-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 493 502 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 Pfam PF00989 PAS fold 155 252 7.6E-8 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 Pfam PF00158 Sigma-54 interaction domain 279 446 3.6E-70 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 SUPERFAMILY SSF55781 10 110 1.77E-5 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 Gene3D G3DSA:1.10.8.60 453 529 4.4E-23 T 11-11-2016 Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 SMART SM00091 154 221 1.2E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 SUPERFAMILY SSF52540 278 523 1.57E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 SUPERFAMILY SSF55785 154 252 3.84E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 Gene3D G3DSA:3.40.50.300 277 452 9.8E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 Gene3D G3DSA:3.30.450.20 155 257 6.6E-11 T 11-11-2016 Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 303 316 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 Gene3D G3DSA:1.10.10.60 541 585 9.9E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 SMART SM00382 299 443 5.2E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 156 263 1.6E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 Gene3D G3DSA:3.30.450.40 31 113 9.0E-6 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 Pfam PF02954 Bacterial regulatory protein, Fis family 544 587 3.1E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS04260 6abd54d0c01d3c8744891083fc00f837 589 SUPERFAMILY SSF46689 493 589 2.38E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 Gene3D G3DSA:1.10.150.20 11 59 8.4E-10 T 11-11-2016 Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 82 287 2.4E-80 T 11-11-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 SUPERFAMILY SSF47781 10 79 2.22E-10 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 Gene3D G3DSA:3.40.50.450 113 274 3.6E-17 T 11-11-2016 Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 Pfam PF02481 DNA recombination-mediator protein A 82 279 1.4E-82 T 11-11-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 Gene3D G3DSA:1.10.10.10 299 351 2.2E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 SUPERFAMILY SSF46785 297 352 4.71E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 SUPERFAMILY SSF102405 83 288 7.94E-48 T 11-11-2016 Gferi_RS01025 04152d0ddfe368b25c2a75422bb6156e 360 Pfam PF01978 Sugar-specific transcriptional regulator TrmB 300 355 4.0E-6 T 11-11-2016 IPR002831 Transcription regulator TrmB, N-terminal Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 SUPERFAMILY SSF53098 1 154 1.4E-51 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 151 1.0E-53 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 148 - T 11-11-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 154 47.838 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 Gene3D G3DSA:3.30.420.10 1 154 2.0E-64 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.1E-34 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 139 151 1.1E-34 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 1.1E-34 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.1E-34 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.1E-34 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Gferi_RS26595 4c672385045fbe87815036a5b6cee3c8 164 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 154 3.2E-50 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 Gene3D G3DSA:1.10.10.10 5 136 8.4E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 ProSitePatterns PS01117 MarR-type HTH domain signature. 61 95 - T 11-11-2016 IPR023187 Transcriptional regulator MarR-type, conserved site Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 2.6E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 2.6E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 2.6E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 46 62 2.6E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 SUPERFAMILY SSF46785 3 135 9.43E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 Pfam PF01047 MarR family 29 85 3.4E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21925 921052f55bba2dfb5c97d4086a5fcce9 146 SMART SM00347 22 122 1.8E-17 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS17920 b111c2bcb0f22409777c3f24fc51ebd8 381 Gene3D G3DSA:3.20.20.210 128 374 1.9E-32 T 11-11-2016 Gferi_RS17920 b111c2bcb0f22409777c3f24fc51ebd8 381 SUPERFAMILY SSF51726 106 374 2.27E-30 T 11-11-2016 Gferi_RS17920 b111c2bcb0f22409777c3f24fc51ebd8 381 SUPERFAMILY SSF51726 1 61 2.27E-30 T 11-11-2016 Gferi_RS17920 b111c2bcb0f22409777c3f24fc51ebd8 381 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 168 374 1.6E-26 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 SMART SM00895 86 210 1.9E-9 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 SUPERFAMILY SSF46785 10 80 2.51E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 SUPERFAMILY SSF48008 82 209 7.59E-18 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 76 2.1E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 7.4E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 7.4E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 Pfam PF07729 FCD domain 90 209 9.3E-21 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 SMART SM00345 18 76 2.6E-18 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 Gene3D G3DSA:1.10.10.10 6 77 5.0E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14685 7268da506bab10fe91d6d6447eb7dfc7 229 Gene3D G3DSA:1.20.120.530 80 211 6.5E-22 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS07395 973f042b32ac1dcf9a933f1e24853d6b 519 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 75 220 3.1E-11 T 11-11-2016 Gferi_RS27165 dc47505ca6d4f37b8e8d14e3bcfb699f 245 Gene3D G3DSA:3.30.240.20 80 153 1.8E-24 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS27165 dc47505ca6d4f37b8e8d14e3bcfb699f 245 Gene3D G3DSA:3.30.240.20 169 228 8.2E-17 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS27165 dc47505ca6d4f37b8e8d14e3bcfb699f 245 Pfam PF04239 Protein of unknown function (DUF421) 88 156 5.8E-21 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS27165 dc47505ca6d4f37b8e8d14e3bcfb699f 245 Pfam PF04239 Protein of unknown function (DUF421) 170 217 8.5E-8 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS17445 cbbe206f641a9dfdae8b323f405bf7a8 122 SUPERFAMILY SSF50193 1 122 5.1E-52 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Gferi_RS17445 cbbe206f641a9dfdae8b323f405bf7a8 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 2.0E-57 T 11-11-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 Gferi_RS17445 cbbe206f641a9dfdae8b323f405bf7a8 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.485 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Gferi_RS17445 cbbe206f641a9dfdae8b323f405bf7a8 122 Gene3D G3DSA:2.40.150.20 1 122 3.6E-54 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Gferi_RS17445 cbbe206f641a9dfdae8b323f405bf7a8 122 SMART SM01374 1 122 3.6E-88 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Gferi_RS17445 cbbe206f641a9dfdae8b323f405bf7a8 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-11-2016 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17445 cbbe206f641a9dfdae8b323f405bf7a8 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.6E-55 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 SMART SM00357 3 66 2.1E-31 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 11-11-2016 IPR019844 Cold-shock conserved site Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 PRINTS PR00050 Cold shock protein signature 39 57 8.5E-20 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 PRINTS PR00050 Cold shock protein signature 4 19 8.5E-20 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 PRINTS PR00050 Cold shock protein signature 24 33 8.5E-20 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 Gene3D G3DSA:2.40.50.140 1 64 2.0E-32 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.4E-30 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 PIRSF PIRSF002599 1 66 1.2E-23 T 11-11-2016 IPR012156 Cold shock, CspA GO:0003676 Gferi_RS14960 8d41ac9afe4a7ead28c3a1996b01a500 66 SUPERFAMILY SSF50249 1 65 2.91E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS03350 5f63f3dfca888762ea18d69325767bdc 271 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 1 254 37.497 T 11-11-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Gferi_RS03350 5f63f3dfca888762ea18d69325767bdc 271 Pfam PF02548 Ketopantoate hydroxymethyltransferase 1 249 7.2E-103 T 11-11-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Gferi_RS03350 5f63f3dfca888762ea18d69325767bdc 271 PIRSF PIRSF000388 1 257 6.2E-108 T 11-11-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Gferi_RS03350 5f63f3dfca888762ea18d69325767bdc 271 Gene3D G3DSA:3.20.20.60 1 255 8.2E-107 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS03350 5f63f3dfca888762ea18d69325767bdc 271 SUPERFAMILY SSF51621 1 254 1.93E-95 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS03350 5f63f3dfca888762ea18d69325767bdc 271 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 255 5.4E-95 T 11-11-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Gferi_RS14710 d5904be4ab964b822377669d005e41b1 338 Gene3D G3DSA:3.40.50.720 173 284 2.4E-30 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS14710 d5904be4ab964b822377669d005e41b1 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 131 2.9E-37 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Gferi_RS14710 d5904be4ab964b822377669d005e41b1 338 Pfam PF00107 Zinc-binding dehydrogenase 172 297 4.3E-28 T 11-11-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Gferi_RS14710 d5904be4ab964b822377669d005e41b1 338 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 11-11-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Gferi_RS14710 d5904be4ab964b822377669d005e41b1 338 SUPERFAMILY SSF51735 139 294 3.94E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS14710 d5904be4ab964b822377669d005e41b1 338 Gene3D G3DSA:3.90.180.10 1 172 1.5E-64 T 11-11-2016 IPR011032 GroES-like Gferi_RS14710 d5904be4ab964b822377669d005e41b1 338 SUPERFAMILY SSF50129 1 171 6.39E-56 T 11-11-2016 IPR011032 GroES-like Gferi_RS14710 d5904be4ab964b822377669d005e41b1 338 SMART SM00829 10 336 2.5E-6 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 Gene3D G3DSA:1.10.287.950 430 647 1.5E-46 T 11-11-2016 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 480 672 1.8E-42 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 SMART SM00304 407 460 35.0 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 SMART SM00304 631 687 84.0 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 SMART SM00304 334 386 2.6E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 SUPERFAMILY SSF58104 354 388 3.53E-64 T 11-11-2016 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 SUPERFAMILY SSF58104 421 690 3.53E-64 T 11-11-2016 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 Gene3D G3DSA:3.30.450.20 137 219 1.7E-19 T 11-11-2016 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 Gene3D G3DSA:3.30.450.20 258 310 1.7E-19 T 11-11-2016 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 Pfam PF00672 HAMP domain 316 379 5.1E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 SUPERFAMILY SSF103190 59 180 2.55E-11 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 Pfam PF02743 Cache domain 35 296 2.2E-32 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS12980 2150fc41a14cf3c42a90fc3d83034262 692 SMART SM00283 415 690 8.2E-58 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 11-11-2016 IPR019844 Cold-shock conserved site Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 SUPERFAMILY SSF50249 1 65 5.07E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 5.3E-32 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 PRINTS PR00050 Cold shock protein signature 39 57 4.5E-20 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 PRINTS PR00050 Cold shock protein signature 4 19 4.5E-20 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 PRINTS PR00050 Cold shock protein signature 24 33 4.5E-20 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 SMART SM00357 3 66 4.2E-32 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 Gene3D G3DSA:2.40.50.140 1 64 8.5E-33 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS04185 11ade2d18e8c205f02fe76319680209b 66 PIRSF PIRSF002599 1 66 7.3E-26 T 11-11-2016 IPR012156 Cold shock, CspA GO:0003676 Gferi_RS17645 1be609959dd43ebe86f29853428ac768 141 PIRSF PIRSF016702 1 141 4.0E-47 T 11-11-2016 IPR025707 Predicted DNA-binding protein with PD1-like DNA-binding motif Gferi_RS17645 1be609959dd43ebe86f29853428ac768 141 Gene3D G3DSA:3.30.1330.80 2 139 3.7E-41 T 11-11-2016 Gferi_RS17645 1be609959dd43ebe86f29853428ac768 141 Pfam PF03479 Domain of unknown function (DUF296) 10 120 3.1E-20 T 11-11-2016 IPR005175 PPC domain Gferi_RS17645 1be609959dd43ebe86f29853428ac768 141 SUPERFAMILY SSF117856 3 137 3.14E-34 T 11-11-2016 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 SUPERFAMILY SSF55124 8 96 1.96E-15 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 Gene3D G3DSA:3.30.70.20 171 215 3.6E-16 T 11-11-2016 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 SUPERFAMILY SSF54862 138 214 6.98E-19 T 11-11-2016 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 SUPERFAMILY SSF56014 214 278 6.15E-32 T 11-11-2016 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 SUPERFAMILY SSF56014 90 157 6.15E-32 T 11-11-2016 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 Pfam PF13237 4Fe-4S dicluster domain 159 205 3.6E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 16 79 5.0E-13 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 Gene3D G3DSA:3.30.70.20 149 170 3.8E-4 T 11-11-2016 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 194 205 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 Gene3D G3DSA:3.30.413.10 216 279 3.7E-31 T 11-11-2016 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 Gene3D G3DSA:3.30.413.10 91 148 3.7E-31 T 11-11-2016 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 136 152 - T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS13205 c2aea593523852d4a86bcb6913e88497 282 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 90 277 2.3E-26 T 11-11-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS05455 2929340d4f575782579f1e58a4ae4962 309 SUPERFAMILY SSF141986 141 299 2.09E-45 T 11-11-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain Gferi_RS05455 2929340d4f575782579f1e58a4ae4962 309 Pfam PF02016 LD-carboxypeptidase 13 292 3.8E-86 T 11-11-2016 IPR003507 Peptidase family S66 Gferi_RS05455 2929340d4f575782579f1e58a4ae4962 309 Gene3D G3DSA:3.50.30.60 169 301 6.2E-48 T 11-11-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain Gferi_RS05455 2929340d4f575782579f1e58a4ae4962 309 Gene3D G3DSA:3.40.50.10740 2 164 2.7E-53 T 11-11-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain Gferi_RS05455 2929340d4f575782579f1e58a4ae4962 309 PIRSF PIRSF028757 1 309 2.8E-96 T 11-11-2016 IPR003507 Peptidase family S66 Gferi_RS05455 2929340d4f575782579f1e58a4ae4962 309 SUPERFAMILY SSF52317 2 160 1.01E-50 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 Gene3D G3DSA:3.30.450.40 274 420 1.8E-12 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 Gene3D G3DSA:3.30.450.40 117 273 3.7E-33 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 SMART SM00065 133 274 5.2E-14 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 SUPERFAMILY SSF55073 429 541 1.33E-43 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 SUPERFAMILY SSF55073 584 627 1.33E-43 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 Pfam PF13185 GAF domain 132 264 1.4E-16 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 420 558 5.4E-43 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 SUPERFAMILY SSF55781 278 425 4.58E-13 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 SMART SM00267 413 627 5.6E-43 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 Gene3D G3DSA:3.30.70.270 426 543 2.1E-49 T 11-11-2016 Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 Gene3D G3DSA:3.30.70.270 584 629 2.1E-49 T 11-11-2016 Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 Pfam PF00990 Diguanylate cyclase, GGDEF domain 424 544 5.4E-36 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 Pfam PF00990 Diguanylate cyclase, GGDEF domain 577 623 9.1E-5 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS05090 6b974d0e532e3240bad3d2cb777ac8e6 633 SUPERFAMILY SSF55781 118 286 1.77E-30 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS10285 f0a3344ef92dac5789871b563a1824dd 193 SUPERFAMILY SSF53448 1 185 4.43E-33 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS10285 f0a3344ef92dac5789871b563a1824dd 193 Gene3D G3DSA:3.90.550.10 1 188 8.6E-34 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS10285 f0a3344ef92dac5789871b563a1824dd 193 Pfam PF12804 MobA-like NTP transferase domain 4 161 7.9E-45 T 11-11-2016 IPR025877 MobA-like NTP transferase Gferi_RS10285 f0a3344ef92dac5789871b563a1824dd 193 TIGRFAM TIGR03310 matur_MocA_YgfJ: molybdenum cofactor cytidylyltransferase 4 187 2.7E-58 T 11-11-2016 IPR017696 Molybdenum cofactor cytidylyltransferase MetaCyc: PWY-6476 Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 Gene3D G3DSA:1.10.287.130 498 568 1.2E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 SMART SM00388 506 572 2.6E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 Pfam PF00512 His Kinase A (phospho-acceptor) domain 507 572 1.8E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 SMART SM00387 618 725 1.3E-10 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 SUPERFAMILY SSF47384 495 572 1.22E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 SUPERFAMILY SSF55874 575 710 4.11E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 625 710 1.2E-10 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 Gene3D G3DSA:3.30.565.10 574 711 3.5E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 673 683 1.1E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14890 e9e8684d89c64b1f2c28fcc6ab604698 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 688 706 1.1E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS04365 93f83c6f90ee2a63128ce7787c0cdbbd 162 Gene3D G3DSA:2.30.110.10 2 149 6.0E-44 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS04365 93f83c6f90ee2a63128ce7787c0cdbbd 162 Pfam PF01613 Flavin reductase like domain 11 154 1.7E-31 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS04365 93f83c6f90ee2a63128ce7787c0cdbbd 162 SMART SM00903 10 160 5.8E-32 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS04365 93f83c6f90ee2a63128ce7787c0cdbbd 162 SUPERFAMILY SSF50475 9 152 4.27E-40 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 Gene3D G3DSA:3.90.930.12 84 178 1.1E-41 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 38.981 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 PIRSF PIRSF002162 1 178 1.8E-50 T 11-11-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 4.6E-77 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 Pfam PF00347 Ribosomal protein L6 91 165 2.4E-17 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 Pfam PF00347 Ribosomal protein L6 11 83 1.5E-20 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 Gene3D G3DSA:3.90.930.12 2 83 4.9E-31 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 155 163 - T 11-11-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 PRINTS PR00059 Ribosomal protein L6 signature 142 163 4.1E-34 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 PRINTS PR00059 Ribosomal protein L6 signature 72 97 4.1E-34 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 PRINTS PR00059 Ribosomal protein L6 signature 100 116 4.1E-34 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 SUPERFAMILY SSF56053 1 83 2.62E-26 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17470 5a4c9cec88a9478748ed8e6ba0b42f70 180 SUPERFAMILY SSF56053 84 178 7.2E-37 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:3.40.50.720 437 524 1.5E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:3.40.50.720 197 283 1.5E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Pfam PF12838 4Fe-4S dicluster domain 614 672 2.3E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 PRINTS PR00419 Adrenodoxin reductase family signature 195 217 9.1E-19 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 PRINTS PR00419 Adrenodoxin reductase family signature 360 373 9.1E-19 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 PRINTS PR00419 Adrenodoxin reductase family signature 218 231 9.1E-19 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 PRINTS PR00419 Adrenodoxin reductase family signature 326 340 9.1E-19 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:3.50.50.60 284 436 6.5E-45 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:1.10.1060.10 525 571 6.1E-20 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:1.10.1060.10 620 680 6.1E-20 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:1.10.1060.10 99 196 9.8E-25 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 100 179 7.8E-17 T 11-11-2016 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 689 737 1.6E-10 T 11-11-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 SUPERFAMILY SSF51971 192 436 4.65E-65 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 SMART SM00926 687 741 1.3E-8 T 11-11-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:3.40.50.740 744 816 1.6E-54 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:3.40.50.740 973 1125 1.6E-54 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:3.40.228.10 820 972 9.3E-18 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 4 78 2.6E-17 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 194 486 1.2E-29 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 658 669 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Pfam PF00384 Molybdopterin oxidoreductase 744 1099 2.7E-34 T 11-11-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 SUPERFAMILY SSF54862 561 676 2.27E-24 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 SUPERFAMILY SSF54292 4 101 1.62E-28 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:2.20.25.90 689 738 2.5E-14 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 SUPERFAMILY SSF46548 100 203 3.19E-17 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 SUPERFAMILY SSF53706 688 1126 2.36E-87 T 11-11-2016 Gferi_RS19920 fc8355498aae0774264979b216d4eff7 1192 Gene3D G3DSA:3.10.20.30 4 62 7.8E-9 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS16410 e66ce74d49121accc674c06338dee523 615 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 81 4.3E-10 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS16410 e66ce74d49121accc674c06338dee523 615 SUPERFAMILY SSF54292 3 94 3.5E-19 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS16410 e66ce74d49121accc674c06338dee523 615 Gene3D G3DSA:3.10.20.30 5 93 6.8E-18 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS16410 e66ce74d49121accc674c06338dee523 615 Pfam PF14574 Domain of unknown function (DUF4445) 196 612 9.8E-151 T 11-11-2016 IPR027980 Protein of unknown function DUF4445 Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 SUPERFAMILY SSF54106 15 59 3.92E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 SUPERFAMILY SSF54106 129 174 2.35E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 Pfam PF01476 LysM domain 16 59 7.6E-10 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 Pfam PF01476 LysM domain 73 116 3.5E-15 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 Pfam PF01476 LysM domain 131 174 2.4E-16 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 SMART SM00257 130 174 1.3E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 SMART SM00257 15 59 1.9E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 SMART SM00257 72 116 3.6E-16 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 Gene3D G3DSA:3.10.350.10 72 116 6.3E-16 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 Gene3D G3DSA:3.10.350.10 129 175 1.4E-16 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 Gene3D G3DSA:3.10.350.10 16 59 6.2E-13 T 11-11-2016 IPR018392 LysM domain Gferi_RS23225 daa28fa1f1be63ef7f1980b820952fbb 177 SUPERFAMILY SSF54106 72 116 3.27E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS12750 3ae7e783d901eb77a001e4a1d2ef5ce2 335 PIRSF PIRSF036894 1 308 1.7E-97 T 11-11-2016 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 Gferi_RS12750 3ae7e783d901eb77a001e4a1d2ef5ce2 335 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 106 303 2.2E-34 T 11-11-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 Gferi_RS12750 3ae7e783d901eb77a001e4a1d2ef5ce2 335 Pfam PF01238 Phosphomannose isomerase type I 9 193 4.2E-12 T 11-11-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 Gferi_RS12750 3ae7e783d901eb77a001e4a1d2ef5ce2 335 SUPERFAMILY SSF51182 2 309 2.08E-84 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS12750 3ae7e783d901eb77a001e4a1d2ef5ce2 335 Gene3D G3DSA:2.60.120.10 224 308 2.2E-20 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS12750 3ae7e783d901eb77a001e4a1d2ef5ce2 335 Gene3D G3DSA:2.60.120.10 2 209 2.1E-65 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS26325 9a561ad3710553103a32db9a3335cf67 322 SUPERFAMILY SSF48576 3 317 8.64E-81 T 11-11-2016 IPR008949 Isoprenoid synthase domain Gferi_RS26325 9a561ad3710553103a32db9a3335cf67 322 Gene3D G3DSA:1.10.600.10 9 320 3.0E-86 T 11-11-2016 IPR008949 Isoprenoid synthase domain Gferi_RS26325 9a561ad3710553103a32db9a3335cf67 322 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 Gferi_RS26325 9a561ad3710553103a32db9a3335cf67 322 Pfam PF00348 Polyprenyl synthetase 31 271 2.3E-59 T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 Gferi_RS26325 9a561ad3710553103a32db9a3335cf67 322 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 Gferi_RS19735 cbb7d26090d6c4dcbb43217643adebb4 114 Pfam PF07883 Cupin domain 30 97 1.8E-17 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS19735 cbb7d26090d6c4dcbb43217643adebb4 114 Gene3D G3DSA:2.60.120.10 24 109 1.2E-22 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS19735 cbb7d26090d6c4dcbb43217643adebb4 114 SUPERFAMILY SSF51182 24 103 3.71E-23 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS23070 b3661ce08bed454fb1b57f4da7ef431d 316 Pfam PF00480 ROK family 3 312 6.1E-74 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS23070 b3661ce08bed454fb1b57f4da7ef431d 316 SUPERFAMILY SSF53067 1 313 1.79E-66 T 11-11-2016 Gferi_RS23070 b3661ce08bed454fb1b57f4da7ef431d 316 TIGRFAM TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase) 3 312 6.3E-84 T 11-11-2016 IPR004654 Glucokinase ROK GO:0004340|GO:0005737|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Gferi_RS23070 b3661ce08bed454fb1b57f4da7ef431d 316 Gene3D G3DSA:3.30.420.40 2 139 1.3E-40 T 11-11-2016 Gferi_RS23070 b3661ce08bed454fb1b57f4da7ef431d 316 Gene3D G3DSA:3.30.420.40 140 287 5.4E-53 T 11-11-2016 Gferi_RS08690 2b375fdb306140c354e102c813c74635 215 Pfam PF01081 KDPG and KHG aldolase 9 204 1.6E-34 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Gferi_RS08690 2b375fdb306140c354e102c813c74635 215 Gene3D G3DSA:3.20.20.70 5 214 2.1E-63 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS08690 2b375fdb306140c354e102c813c74635 215 SUPERFAMILY SSF51569 3 213 5.31E-53 T 11-11-2016 Gferi_RS02050 57abfe91454d623923d521924f8d0a29 191 PIRSF PIRSF010130 1 191 7.7E-85 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS02050 57abfe91454d623923d521924f8d0a29 191 Pfam PF06130 Phosphate propanoyltransferase 116 181 1.1E-18 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS02050 57abfe91454d623923d521924f8d0a29 191 Pfam PF06130 Phosphate propanoyltransferase 7 86 8.0E-28 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 SUPERFAMILY SSF56024 273 469 1.26E-47 T 11-11-2016 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 Pfam PF13396 Phospholipase_D-nuclease N-terminal 20 59 3.5E-10 T 11-11-2016 IPR027379 Cardiolipin synthase N-terminal Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 10 485 4.4E-167 T 11-11-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 Hamap MF_01916 Cardiolipin synthase. 13 485 42.758 T 11-11-2016 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 SUPERFAMILY SSF56024 106 315 2.13E-55 T 11-11-2016 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 SMART SM00155 221 248 5.9E-6 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 SMART SM00155 398 425 0.023 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 Pfam PF13091 PLD-like domain 138 258 6.6E-16 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 Pfam PF13091 PLD-like domain 328 451 1.9E-26 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 Gene3D G3DSA:3.30.870.10 116 319 5.0E-53 T 11-11-2016 Gferi_RS16525 e0a112b72ff8bcac73e7dc0c9a96c3c8 485 Gene3D G3DSA:3.30.870.10 320 482 3.4E-35 T 11-11-2016 Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 SUPERFAMILY SSF52540 243 496 9.48E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 Gene3D G3DSA:3.40.50.300 4 240 1.1E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 Gene3D G3DSA:3.40.50.300 259 503 1.2E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 SMART SM00382 287 482 2.2E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 SMART SM00382 30 221 2.7E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 Pfam PF00005 ABC transporter 279 433 3.1E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 Pfam PF00005 ABC transporter 21 172 1.7E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25515 1f7295b823f76eb5966fdc3e0d4c8cef 505 SUPERFAMILY SSF52540 4 233 2.83E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 PRINTS PR01181 Diaminopimelate decarboxylase signature 377 399 4.2E-7 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 PRINTS PR01181 Diaminopimelate decarboxylase signature 295 313 4.2E-7 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 4.2E-7 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 PRINTS PR01181 Diaminopimelate decarboxylase signature 154 163 4.2E-7 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 284 386 1.5E-11 T 11-11-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 29 277 5.9E-21 T 11-11-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 Gene3D G3DSA:3.20.20.10 28 266 7.0E-51 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 1.2E-8 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 1.2E-8 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 268 287 1.2E-8 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 367 380 1.2E-8 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 SUPERFAMILY SSF51419 19 278 4.09E-53 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 SUPERFAMILY SSF50621 255 408 8.79E-38 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Gferi_RS07790 8c05d38dfc7a2a79074708d5d5a781c5 412 Gene3D G3DSA:2.40.37.10 267 409 1.1E-34 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Gferi_RS19720 2e7a0b780d273ba9ccf334f507e00d34 420 Pfam PF00107 Zinc-binding dehydrogenase 187 328 5.2E-13 T 11-11-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Gferi_RS19720 2e7a0b780d273ba9ccf334f507e00d34 420 SUPERFAMILY SSF51735 170 339 2.14E-13 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19720 2e7a0b780d273ba9ccf334f507e00d34 420 Gene3D G3DSA:3.40.50.720 185 315 6.1E-17 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19720 2e7a0b780d273ba9ccf334f507e00d34 420 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 98 1.0E-6 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Gferi_RS19720 2e7a0b780d273ba9ccf334f507e00d34 420 Gene3D G3DSA:3.90.180.10 1 184 3.8E-24 T 11-11-2016 IPR011032 GroES-like Gferi_RS19720 2e7a0b780d273ba9ccf334f507e00d34 420 SUPERFAMILY SSF50129 3 187 4.72E-24 T 11-11-2016 IPR011032 GroES-like Gferi_RS16305 e8628e502d4e6832b735bd58802b6150 421 Pfam PF07613 Protein of unknown function (DUF1576) 253 415 1.6E-53 T 11-11-2016 IPR011470 Protein of unknown function DUF1576 Gferi_RS16305 e8628e502d4e6832b735bd58802b6150 421 Pfam PF07613 Protein of unknown function (DUF1576) 38 213 1.6E-61 T 11-11-2016 IPR011470 Protein of unknown function DUF1576 Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 Pfam PF13393 Histidyl-tRNA synthetase 10 322 1.9E-41 T 11-11-2016 Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 Pfam PF03129 Anticodon binding domain 341 423 2.0E-13 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 SUPERFAMILY SSF52954 337 422 4.38E-19 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 426 24.803 T 11-11-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 Gene3D G3DSA:3.40.50.800 336 422 5.1E-23 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 416 2.3E-109 T 11-11-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 SUPERFAMILY SSF55681 6 327 1.11E-68 T 11-11-2016 Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 Gene3D G3DSA:3.30.930.10 239 330 5.1E-81 T 11-11-2016 Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 Gene3D G3DSA:3.30.930.10 5 193 5.1E-81 T 11-11-2016 Gferi_RS08510 6247902624c1b3170efc07f9e5fe1a04 426 PIRSF PIRSF001549 1 425 2.5E-120 T 11-11-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Gferi_RS21275 46ae9ba9d935fb3dd0c7eb40f55f6aea 344 Pfam PF13484 4Fe-4S double cluster binding domain 183 245 1.2E-10 T 11-11-2016 Gferi_RS21275 46ae9ba9d935fb3dd0c7eb40f55f6aea 344 SUPERFAMILY SSF54862 180 254 1.9E-6 T 11-11-2016 Gferi_RS21275 46ae9ba9d935fb3dd0c7eb40f55f6aea 344 Gene3D G3DSA:3.30.70.20 183 254 4.0E-4 T 11-11-2016 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 Gene3D G3DSA:1.10.601.10 11 104 4.0E-32 T 11-11-2016 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 SUPERFAMILY SSF88659 170 254 1.81E-18 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 Pfam PF04545 Sigma-70, region 4 202 250 5.8E-18 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 SUPERFAMILY SSF88659 109 182 1.35E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 Gene3D G3DSA:1.10.10.10 195 254 1.2E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 Pfam PF04539 Sigma-70 region 3 116 182 3.1E-8 T 11-11-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 Pfam PF04542 Sigma-70 region 2 37 103 1.2E-16 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 TIGRFAM TIGR02885 spore_sigF: RNA polymerase sigma-F factor 22 252 1.4E-108 T 11-11-2016 IPR014236 RNA polymerase sigma-F type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 SUPERFAMILY SSF88946 11 105 9.29E-34 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 Gene3D G3DSA:1.10.10.10 105 157 9.4E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 223 249 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 31 252 1.3E-84 T 11-11-2016 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 34 252 2.2E-35 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 PRINTS PR00046 Major sigma-70 factor signature 85 93 1.2E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 PRINTS PR00046 Major sigma-70 factor signature 223 238 1.2E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 PRINTS PR00046 Major sigma-70 factor signature 206 218 1.2E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 PRINTS PR00046 Major sigma-70 factor signature 61 74 1.2E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03065 77b371b6e13b9c6fb3e409715166ff5b 256 PRINTS PR00046 Major sigma-70 factor signature 238 249 1.2E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 11-11-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 Gene3D G3DSA:3.80.30.10 112 276 3.5E-38 T 11-11-2016 Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 Pfam PF04055 Radical SAM superfamily 25 199 1.7E-19 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 Pfam PF13353 4Fe-4S single cluster domain 16 150 5.2E-15 T 11-11-2016 Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 46 57 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 PIRSF PIRSF000371 2 278 2.7E-66 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 Gene3D G3DSA:3.30.70.20 44 95 1.7E-14 T 11-11-2016 Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 SUPERFAMILY SSF54862 45 124 6.55E-15 T 11-11-2016 Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 TIGRFAM TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family 5 277 4.4E-99 T 11-11-2016 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW Gferi_RS08610 2a1497149de47cec343d69437b8cf8a6 279 SUPERFAMILY SSF102114 78 270 3.79E-13 T 11-11-2016 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 3 91 1.0E-39 T 11-11-2016 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 405 451 3.1E-20 T 11-11-2016 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 Pfam PF01189 16S rRNA methyltransferase RsmB/F 96 298 3.1E-47 T 11-11-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 Gene3D G3DSA:3.40.50.150 89 300 3.7E-56 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 283 300 1.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 173 185 1.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 223 239 1.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 77 91 1.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 106 116 1.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 Pfam PF17126 RsmF rRNA methyltransferase first C-terminal domain 325 386 1.3E-23 T 11-11-2016 IPR031340 Ribosomal RNA small subunit methyltransferase F, first C-terminal domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 SUPERFAMILY SSF53335 2 300 2.79E-68 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 34 300 1.9E-66 T 11-11-2016 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 Gferi_RS24035 e7de4671ccfca5eb1f383d9816d858a3 453 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 172 183 - T 11-11-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS14790 a9ab42ecc9f0140eeba2154689cc1a0a 261 Gene3D G3DSA:3.40.50.300 4 235 3.5E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14790 a9ab42ecc9f0140eeba2154689cc1a0a 261 SMART SM00382 29 221 5.3E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14790 a9ab42ecc9f0140eeba2154689cc1a0a 261 SUPERFAMILY SSF52540 3 234 1.72E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14790 a9ab42ecc9f0140eeba2154689cc1a0a 261 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS14790 a9ab42ecc9f0140eeba2154689cc1a0a 261 Pfam PF00005 ABC transporter 20 170 3.7E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS02730 afc912dac00b8c8a1b3270df204ac15b 153 Pfam PF11385 Protein of unknown function (DUF3189) 2 147 6.8E-54 T 11-11-2016 IPR021525 Protein of unknown function DUF3189 Gferi_RS23885 1a6d12ab87134c03dcb5341031e323d1 223 Pfam PF13545 Crp-like helix-turn-helix domain 158 214 1.3E-9 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS23885 1a6d12ab87134c03dcb5341031e323d1 223 Gene3D G3DSA:1.10.10.10 155 218 1.6E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23885 1a6d12ab87134c03dcb5341031e323d1 223 SUPERFAMILY SSF51206 5 134 1.96E-23 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS23885 1a6d12ab87134c03dcb5341031e323d1 223 Pfam PF00027 Cyclic nucleotide-binding domain 35 117 6.8E-11 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS23885 1a6d12ab87134c03dcb5341031e323d1 223 SUPERFAMILY SSF46785 155 219 1.92E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23885 1a6d12ab87134c03dcb5341031e323d1 223 Gene3D G3DSA:2.60.120.10 8 149 1.2E-26 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 SUPERFAMILY SSF50249 64 126 7.28E-18 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 11-11-2016 IPR013852 Translation elongation factor P/YeiP, conserved site Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 Hamap MF_00141 Elongation factor P [efp]. 1 185 50.099 T 11-11-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 Gene3D G3DSA:2.30.30.30 1 63 1.6E-28 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 SUPERFAMILY SSF50104 1 62 4.76E-21 T 11-11-2016 IPR008991 Translation protein SH3-like domain Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 4.4E-26 T 11-11-2016 IPR013185 Translation elongation factor, KOW-like Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 Gene3D G3DSA:2.40.50.140 128 185 6.8E-30 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 Pfam PF09285 Elongation factor P, C-terminal 129 184 8.9E-28 T 11-11-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 SMART SM00841 129 184 3.8E-35 T 11-11-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 Gene3D G3DSA:2.40.50.140 64 127 3.1E-25 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 Pfam PF01132 Elongation factor P (EF-P) OB domain 69 120 5.0E-22 T 11-11-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 TIGRFAM TIGR00038 efp: translation elongation factor P 2 185 9.8E-78 T 11-11-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 SMART SM01185 67 121 2.3E-25 T 11-11-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 PIRSF PIRSF005901 1 185 3.8E-66 T 11-11-2016 IPR020599 Translation elongation factor P/YeiP Gferi_RS00350 bb1fdece4fd6e08ad02effab8b04ffdf 185 SUPERFAMILY SSF50249 128 185 2.4E-19 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 SUPERFAMILY SSF54001 38 153 2.89E-22 T 11-11-2016 Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 SUPERFAMILY SSF54001 282 401 2.8E-20 T 11-11-2016 Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 SUPERFAMILY SSF54001 545 663 1.86E-26 T 11-11-2016 Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Pfam PF00877 NlpC/P60 family 169 272 2.0E-17 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Pfam PF00877 NlpC/P60 family 556 662 1.7E-17 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Pfam PF00877 NlpC/P60 family 44 149 5.4E-12 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Pfam PF00877 NlpC/P60 family 296 398 2.5E-13 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Pfam PF00877 NlpC/P60 family 429 534 3.2E-22 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 SUPERFAMILY SSF54001 411 536 1.08E-34 T 11-11-2016 Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 SUPERFAMILY SSF54001 164 275 2.99E-23 T 11-11-2016 Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Gene3D G3DSA:3.90.1720.10 286 402 1.9E-24 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Gene3D G3DSA:3.90.1720.10 38 154 4.5E-23 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Gene3D G3DSA:3.90.1720.10 545 663 1.1E-29 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Gene3D G3DSA:3.90.1720.10 413 538 3.5E-37 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS21745 bc50ae237dca0e609a9fb711edd027fd 665 Gene3D G3DSA:3.90.1720.10 163 274 9.8E-27 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Gene3D G3DSA:1.10.10.60 548 624 1.3E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Pfam PF02954 Bacterial regulatory protein, Fis family 581 621 2.1E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 SUPERFAMILY SSF55785 185 291 1.36E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Gene3D G3DSA:3.40.50.10660 72 159 1.8E-10 T 11-11-2016 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 346 359 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 SUPERFAMILY SSF159800 1 179 3.53E-32 T 11-11-2016 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 SMART SM00091 195 261 5.2E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 SUPERFAMILY SSF52540 321 558 6.59E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Gene3D G3DSA:3.40.50.2300 161 187 1.1E-7 T 11-11-2016 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Gene3D G3DSA:3.40.50.2300 2 70 1.1E-7 T 11-11-2016 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Pfam PF06506 Propionate catabolism activator 19 183 5.8E-34 T 11-11-2016 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Pfam PF00158 Sigma-54 interaction domain 323 489 3.7E-67 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 536 545 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Gene3D G3DSA:1.10.8.60 496 547 2.2E-14 T 11-11-2016 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Gene3D G3DSA:3.40.50.300 318 495 1.3E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 SMART SM00382 342 487 3.5E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 195 302 4.4E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 409 424 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Pfam PF00989 PAS fold 196 293 2.5E-7 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 Gene3D G3DSA:3.30.450.20 195 294 7.3E-14 T 11-11-2016 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 604 624 5.9E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 587 604 5.9E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS08480 f89d8118781e320879c2d520f3ef27f5 625 SUPERFAMILY SSF46689 536 623 1.97E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS04295 043dfb089e21ae2997d52b8f0fd87801 309 Pfam PF02690 Na+/Pi-cotransporter 162 291 1.6E-17 T 11-11-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Gferi_RS04295 043dfb089e21ae2997d52b8f0fd87801 309 Pfam PF02690 Na+/Pi-cotransporter 15 149 1.8E-39 T 11-11-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Gferi_RS04295 043dfb089e21ae2997d52b8f0fd87801 309 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 9 309 4.1E-67 T 11-11-2016 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Gferi_RS09810 5f563f156341b6c9189fa34b35f2e2c6 327 SUPERFAMILY SSF81345 4 320 1.83E-78 T 11-11-2016 IPR029022 ABC transporter, BtuC-like Gferi_RS09810 5f563f156341b6c9189fa34b35f2e2c6 327 Pfam PF01032 FecCD transport family 15 320 2.5E-89 T 11-11-2016 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 Gferi_RS09810 5f563f156341b6c9189fa34b35f2e2c6 327 Gene3D G3DSA:1.10.3470.10 2 323 7.5E-96 T 11-11-2016 IPR029022 ABC transporter, BtuC-like Gferi_RS08640 fc3131c5ce581f0be57db12b4abeed95 284 Gene3D G3DSA:3.40.50.300 1 224 4.7E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08640 fc3131c5ce581f0be57db12b4abeed95 284 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS08640 fc3131c5ce581f0be57db12b4abeed95 284 SUPERFAMILY SSF52540 2 218 3.55E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08640 fc3131c5ce581f0be57db12b4abeed95 284 SMART SM00382 28 207 1.5E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08640 fc3131c5ce581f0be57db12b4abeed95 284 Pfam PF00005 ABC transporter 20 159 1.1E-25 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS03355 bd1eff186f35b5b3c9d7a4c0c8b64722 255 Gene3D G3DSA:3.30.450.40 80 251 6.5E-61 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS03355 bd1eff186f35b5b3c9d7a4c0c8b64722 255 SMART SM00346 7 94 1.9E-25 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS03355 bd1eff186f35b5b3c9d7a4c0c8b64722 255 SUPERFAMILY SSF55781 64 250 7.19E-54 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS03355 bd1eff186f35b5b3c9d7a4c0c8b64722 255 Gene3D G3DSA:1.10.10.10 5 79 8.8E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03355 bd1eff186f35b5b3c9d7a4c0c8b64722 255 Pfam PF09339 IclR helix-turn-helix domain 9 58 3.0E-11 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS03355 bd1eff186f35b5b3c9d7a4c0c8b64722 255 SUPERFAMILY SSF46785 7 78 1.31E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03355 bd1eff186f35b5b3c9d7a4c0c8b64722 255 Pfam PF01614 Bacterial transcriptional regulator 122 246 1.8E-38 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS15020 3dc5428d5c5192de87abf98d7d125eb8 87 SUPERFAMILY SSF52833 2 85 7.07E-14 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS15020 3dc5428d5c5192de87abf98d7d125eb8 87 Pfam PF00462 Glutaredoxin 4 64 4.4E-6 T 11-11-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Gferi_RS15020 3dc5428d5c5192de87abf98d7d125eb8 87 Gene3D G3DSA:3.40.30.10 4 83 4.0E-12 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS10600 a4a09f8b904f6f6090c9ab438a60566f 217 SMART SM00382 30 217 1.3E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS10600 a4a09f8b904f6f6090c9ab438a60566f 217 Gene3D G3DSA:3.40.50.300 1 217 2.6E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10600 a4a09f8b904f6f6090c9ab438a60566f 217 Pfam PF00005 ABC transporter 21 169 1.1E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS10600 a4a09f8b904f6f6090c9ab438a60566f 217 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS10600 a4a09f8b904f6f6090c9ab438a60566f 217 SUPERFAMILY SSF52540 1 216 5.87E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 Pfam PF00733 Asparagine synthase 242 579 1.4E-93 T 11-11-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 Gene3D G3DSA:3.40.50.620 458 599 7.1E-84 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 Gene3D G3DSA:3.40.50.620 226 400 7.1E-84 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 SUPERFAMILY SSF52402 230 396 8.9E-74 T 11-11-2016 Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 SUPERFAMILY SSF52402 454 575 8.9E-74 T 11-11-2016 Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 534 2.8E-158 T 11-11-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 PIRSF PIRSF001589 1 612 6.5E-141 T 11-11-2016 Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 Pfam PF13537 Glutamine amidotransferase domain 48 169 6.6E-46 T 11-11-2016 IPR017932 Glutamine amidotransferase type 2 domain Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 Gene3D G3DSA:3.60.20.10 1 225 4.2E-74 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS23010 8d2c69169a5068582f47cc1d02efa405 614 SUPERFAMILY SSF56235 1 226 1.2E-64 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS00265 e8d11a25105d313f5696595565d1d298 296 SUPERFAMILY SSF48576 1 285 2.7E-85 T 11-11-2016 IPR008949 Isoprenoid synthase domain Gferi_RS00265 e8d11a25105d313f5696595565d1d298 296 Gene3D G3DSA:1.10.600.10 2 295 1.1E-94 T 11-11-2016 IPR008949 Isoprenoid synthase domain Gferi_RS00265 e8d11a25105d313f5696595565d1d298 296 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 Gferi_RS00265 e8d11a25105d313f5696595565d1d298 296 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 97 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 Gferi_RS00265 e8d11a25105d313f5696595565d1d298 296 Pfam PF00348 Polyprenyl synthetase 33 261 2.3E-57 T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 Gferi_RS00225 4321185d71c7e833f66aa23765a9e5d4 437 Gene3D G3DSA:2.30.42.10 103 204 5.5E-11 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS00225 4321185d71c7e833f66aa23765a9e5d4 437 Pfam PF05580 SpoIVB peptidase S55 212 420 1.3E-89 T 11-11-2016 IPR008763 Peptidase S55, SpoIVB Gferi_RS00225 4321185d71c7e833f66aa23765a9e5d4 437 TIGRFAM TIGR02860 spore_IV_B: stage IV sporulation protein B 7 425 6.6E-156 T 11-11-2016 IPR014219 Peptidase S55, sporulation stage IV, protein B Gferi_RS00225 4321185d71c7e833f66aa23765a9e5d4 437 SUPERFAMILY SSF50156 147 231 4.07E-10 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS00225 4321185d71c7e833f66aa23765a9e5d4 437 SMART SM00228 118 195 0.0027 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS00865 ec16f860741cc221f7b2e7e60934bb98 305 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 42 231 1.2E-26 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Gferi_RS00865 ec16f860741cc221f7b2e7e60934bb98 305 PIRSF PIRSF003092 1 304 1.0E-91 T 11-11-2016 IPR025501 ATP binding protein MinD Gferi_RS00865 ec16f860741cc221f7b2e7e60934bb98 305 Gene3D G3DSA:3.40.50.300 39 281 1.1E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00865 ec16f860741cc221f7b2e7e60934bb98 305 SUPERFAMILY SSF52540 39 301 3.99E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20770 6e45f5d7d5718027ae94cdbe4dc9f9f6 157 SUPERFAMILY SSF52833 6 157 1.71E-49 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20770 6e45f5d7d5718027ae94cdbe4dc9f9f6 157 PIRSF PIRSF000216 3 157 1.8E-53 T 11-11-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20770 6e45f5d7d5718027ae94cdbe4dc9f9f6 157 Gene3D G3DSA:3.40.30.10 78 156 1.3E-13 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20770 6e45f5d7d5718027ae94cdbe4dc9f9f6 157 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 15 157 6.6E-49 T 11-11-2016 Gferi_RS15910 dd599cd20895a3b74e4d9f61de027ea1 90 Gene3D G3DSA:2.40.50.220 1 89 2.5E-36 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS15910 dd599cd20895a3b74e4d9f61de027ea1 90 SUPERFAMILY SSF159133 1 89 1.03E-32 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS15910 dd599cd20895a3b74e4d9f61de027ea1 90 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 83 1.1E-33 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS15910 dd599cd20895a3b74e4d9f61de027ea1 90 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 12 83 4.0E-16 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 251 8.1E-88 T 11-11-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 495 6.7E-234 T 11-11-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 SUPERFAMILY SSF53067 3 254 8.64E-99 T 11-11-2016 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 449 5.3E-64 T 11-11-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 11-11-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 Gene3D G3DSA:3.30.420.40 1 252 2.1E-107 T 11-11-2016 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 SUPERFAMILY SSF53067 254 495 1.4E-90 T 11-11-2016 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 Gene3D G3DSA:3.30.420.40 253 496 8.5E-108 T 11-11-2016 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 PIRSF PIRSF000538 2 497 2.3E-188 T 11-11-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 Hamap MF_00186 Glycerol kinase [glpK]. 2 496 61.215 T 11-11-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 Gferi_RS13045 74890977eeb91672ca6c8f84d2a7342e 497 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 361 381 - T 11-11-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Gferi_RS21870 4574637ba2e7dcee5b6cad77160cbb2e 203 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 53 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS21870 4574637ba2e7dcee5b6cad77160cbb2e 203 Gene3D G3DSA:1.10.357.10 57 202 1.4E-23 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS21870 4574637ba2e7dcee5b6cad77160cbb2e 203 Gene3D G3DSA:1.10.10.60 8 56 4.2E-21 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21870 4574637ba2e7dcee5b6cad77160cbb2e 203 SUPERFAMILY SSF48498 79 202 4.45E-20 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS21870 4574637ba2e7dcee5b6cad77160cbb2e 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 2.5E-16 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21870 4574637ba2e7dcee5b6cad77160cbb2e 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 3.5E-10 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21870 4574637ba2e7dcee5b6cad77160cbb2e 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 3.5E-10 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21870 4574637ba2e7dcee5b6cad77160cbb2e 203 SUPERFAMILY SSF46689 8 63 2.21E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 Gene3D G3DSA:2.60.120.10 15 151 8.4E-34 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 SMART SM00419 176 225 9.0E-14 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 Pfam PF13545 Crp-like helix-turn-helix domain 157 232 2.5E-19 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 SUPERFAMILY SSF51206 15 152 2.88E-36 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 SUPERFAMILY SSF46785 154 232 3.39E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 Pfam PF00027 Cyclic nucleotide-binding domain 38 122 6.8E-23 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 Gene3D G3DSA:1.10.10.10 154 232 1.1E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 198 9.4E-9 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 198 213 9.4E-9 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS05360 71a05b141a219c6ff49e68d1371ca75f 233 SMART SM00100 19 137 1.0E-23 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS05650 87d48f1a6a92f213a90a70df45336462 423 Gene3D G3DSA:3.30.565.10 267 415 1.7E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05650 87d48f1a6a92f213a90a70df45336462 423 SUPERFAMILY SSF55874 267 415 1.44E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05650 87d48f1a6a92f213a90a70df45336462 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 394 1.3E-7 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05650 87d48f1a6a92f213a90a70df45336462 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 369 1.3E-7 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05650 87d48f1a6a92f213a90a70df45336462 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 355 1.3E-7 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05650 87d48f1a6a92f213a90a70df45336462 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 414 1.3E-7 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05650 87d48f1a6a92f213a90a70df45336462 423 SMART SM00387 304 417 2.4E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05650 87d48f1a6a92f213a90a70df45336462 423 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 308 416 9.3E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 3.6E-44 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 3.6E-44 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 3.6E-44 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 3.6E-44 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 3.6E-44 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 227 293 1.5E-17 T 11-11-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 7 297 1.0E-107 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 Gene3D G3DSA:3.40.190.10 111 199 9.8E-37 T 11-11-2016 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 7 212 4.2E-75 T 11-11-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 11-11-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 37.34 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 PIRSF PIRSF001438 1 310 6.9E-118 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 SUPERFAMILY SSF53850 4 218 9.99E-78 T 11-11-2016 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 SUPERFAMILY SSF54782 220 306 6.28E-22 T 11-11-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 Gene3D G3DSA:3.30.160.40 223 305 4.4E-23 T 11-11-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24295 d52d122efb8041df245ff2dcb413218a 310 Gene3D G3DSA:3.40.190.10 3 110 4.5E-47 T 11-11-2016 Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 Pfam PF00155 Aminotransferase class I and II 137 458 7.2E-24 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 1.1E-18 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 SUPERFAMILY SSF53383 100 463 3.93E-86 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 SUPERFAMILY SSF46785 10 78 5.31E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 Gene3D G3DSA:3.40.640.10 136 353 8.1E-61 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 4.8E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 4.8E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 Gene3D G3DSA:1.10.10.10 5 78 1.2E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19300 29300fd1a1ed5c19f6a1656ebf96b756 468 SMART SM00345 17 76 4.8E-19 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 SUPERFAMILY SSF56645 2 242 1.05E-88 T 11-11-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 Gene3D G3DSA:2.40.110.10 121 216 5.3E-42 T 11-11-2016 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 2.8E-28 T 11-11-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 Gene3D G3DSA:1.10.540.10 2 120 4.4E-42 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 376 2.3E-54 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 5.9E-35 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 11-11-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 SUPERFAMILY SSF47203 228 377 5.96E-60 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 PIRSF PIRSF016578 5 378 1.3E-25 T 11-11-2016 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 11-11-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Gferi_RS10530 2cdd2428670b787e9de327985a431519 379 Gene3D G3DSA:1.20.140.10 217 377 1.1E-74 T 11-11-2016 Gferi_RS26285 4e7152086b753a592be731cfbd8573d1 166 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 2 149 1.9E-19 T 11-11-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Gferi_RS26285 4e7152086b753a592be731cfbd8573d1 166 PIRSF PIRSF037497 1 165 2.8E-44 T 11-11-2016 IPR017225 Cell shape-determining protein MreD, predicted Gferi_RS26285 4e7152086b753a592be731cfbd8573d1 166 Pfam PF04093 rod shape-determining protein MreD 9 150 1.1E-12 T 11-11-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Gferi_RS22750 b286f02d0ff8d414e2032703b2dffb59 148 SUPERFAMILY SSF55729 1 127 8.75E-25 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS22750 b286f02d0ff8d414e2032703b2dffb59 148 Pfam PF13673 Acetyltransferase (GNAT) domain 39 139 1.3E-17 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS22750 b286f02d0ff8d414e2032703b2dffb59 148 Gene3D G3DSA:3.40.630.30 1 141 2.7E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS18980 0c3214cdd7010900d56e8406bb29600e 176 Gene3D G3DSA:1.10.10.10 107 164 2.5E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18980 0c3214cdd7010900d56e8406bb29600e 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 163 4.0E-23 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS18980 0c3214cdd7010900d56e8406bb29600e 176 Pfam PF08281 Sigma-70, region 4 108 160 3.7E-11 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS18980 0c3214cdd7010900d56e8406bb29600e 176 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 43 73 - T 11-11-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS18980 0c3214cdd7010900d56e8406bb29600e 176 Pfam PF04542 Sigma-70 region 2 23 86 1.5E-14 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS18980 0c3214cdd7010900d56e8406bb29600e 176 SUPERFAMILY SSF88659 95 165 1.27E-10 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS18980 0c3214cdd7010900d56e8406bb29600e 176 Gene3D G3DSA:1.10.1740.10 2 96 5.7E-23 T 11-11-2016 Gferi_RS18980 0c3214cdd7010900d56e8406bb29600e 176 SUPERFAMILY SSF88946 3 97 5.89E-21 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 1378 1388 - T 11-11-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 Pfam PF00082 Subtilase family 1175 1425 6.4E-46 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 Gene3D G3DSA:3.40.50.200 1104 1433 4.1E-84 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 1213 1226 6.7E-17 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 1377 1393 6.7E-17 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 PRINTS PR00723 Subtilisin serine protease family (S8) signature 1174 1193 6.7E-17 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 Pfam PF00395 S-layer homology domain 152 194 2.0E-12 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 Pfam PF00395 S-layer homology domain 34 73 3.5E-11 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 Pfam PF00395 S-layer homology domain 93 133 4.3E-11 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 Gene3D G3DSA:2.60.40.10 448 513 9.5E-5 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 Gene3D G3DSA:2.60.40.10 808 879 5.5E-6 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS22010 5e1603e8b60b385c4584a8b0bc3d874e 1642 SUPERFAMILY SSF52743 1157 1434 3.01E-81 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS20670 20d4de7b049a40104f5563f7b1e6d268 253 Gene3D G3DSA:3.40.50.2300 1 118 1.8E-29 T 11-11-2016 Gferi_RS20670 20d4de7b049a40104f5563f7b1e6d268 253 SMART SM00448 2 113 1.3E-20 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS20670 20d4de7b049a40104f5563f7b1e6d268 253 Gene3D G3DSA:2.40.50.40 146 213 1.4E-18 T 11-11-2016 Gferi_RS20670 20d4de7b049a40104f5563f7b1e6d268 253 Pfam PF04397 LytTr DNA-binding domain 155 249 9.0E-23 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS20670 20d4de7b049a40104f5563f7b1e6d268 253 SMART SM00850 154 251 3.1E-23 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS20670 20d4de7b049a40104f5563f7b1e6d268 253 SUPERFAMILY SSF52172 1 128 1.08E-29 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS20670 20d4de7b049a40104f5563f7b1e6d268 253 Pfam PF00072 Response regulator receiver domain 4 113 1.1E-20 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22210 25efce0ec760005808a5efbbaee293d3 198 SUPERFAMILY SSF46689 5 84 3.49E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22210 25efce0ec760005808a5efbbaee293d3 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.6E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS22210 25efce0ec760005808a5efbbaee293d3 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.6E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS22210 25efce0ec760005808a5efbbaee293d3 198 Gene3D G3DSA:1.10.357.10 5 194 1.4E-28 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS22210 25efce0ec760005808a5efbbaee293d3 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 60 8.1E-17 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 SUPERFAMILY SSF51569 2 291 3.3E-99 T 11-11-2016 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 11-11-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 11-11-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 508 44.925 T 11-11-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 SMART SM00917 369 499 4.8E-38 T 11-11-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 496 1.1E-232 T 11-11-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 Pfam PF00682 HMGL-like 5 273 1.7E-101 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 Pfam PF08502 LeuA allosteric (dimerisation) domain 370 498 2.1E-36 T 11-11-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 Gene3D G3DSA:3.20.20.70 2 346 1.1E-152 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS15735 61ffc14ce194636ec6cf668edbc4db27 508 SUPERFAMILY SSF110921 391 498 7.85E-25 T 11-11-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS05070 f67b6320fe76ea1d611b21cdb1cf4e48 320 SUPERFAMILY SSF142535 49 312 3.01E-36 T 11-11-2016 Gferi_RS05070 f67b6320fe76ea1d611b21cdb1cf4e48 320 Gene3D G3DSA:3.40.630.50 20 207 6.1E-19 T 11-11-2016 Gferi_RS05070 f67b6320fe76ea1d611b21cdb1cf4e48 320 Pfam PF04414 D-aminoacyl-tRNA deacylase 83 301 1.6E-29 T 11-11-2016 IPR007508 D-aminoacyl-tRNA deacylase DtdA GO:0016788|GO:0051499 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 SUPERFAMILY SSF52777 220 441 9.34E-76 T 11-11-2016 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 SUPERFAMILY SSF47005 160 196 3.01E-8 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 Pfam PF00364 Biotin-requiring enzyme 5 75 2.4E-17 T 11-11-2016 IPR000089 Biotin/lipoyl attachment Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 Gene3D G3DSA:2.40.50.100 3 85 1.6E-26 T 11-11-2016 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-11-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 Gene3D G3DSA:4.10.320.10 118 158 1.0E-11 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 Gene3D G3DSA:4.10.320.10 159 196 8.2E-12 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 Pfam PF02817 e3 binding domain 163 195 4.1E-10 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 Pfam PF02817 e3 binding domain 122 155 2.0E-9 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 219 441 2.4E-77 T 11-11-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 SUPERFAMILY SSF47005 117 158 9.42E-9 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 SUPERFAMILY SSF51230 3 85 3.8E-24 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS17225 caae94af8d3de367230d867b2733feda 442 Gene3D G3DSA:3.30.559.10 216 441 1.1E-79 T 11-11-2016 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 Gferi_RS06745 79563967983248c5dd18f5302c1e0a91 249 Gene3D G3DSA:1.10.10.10 72 113 4.9E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06745 79563967983248c5dd18f5302c1e0a91 249 SUPERFAMILY SSF46894 72 119 4.08E-9 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS06745 79563967983248c5dd18f5302c1e0a91 249 Pfam PF00196 Bacterial regulatory proteins, luxR family 77 112 1.3E-6 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06745 79563967983248c5dd18f5302c1e0a91 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 77 91 1.9E-5 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06745 79563967983248c5dd18f5302c1e0a91 249 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 91 107 1.9E-5 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06745 79563967983248c5dd18f5302c1e0a91 249 SMART SM00421 74 131 0.003 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06745 79563967983248c5dd18f5302c1e0a91 249 Pfam PF09860 Uncharacterized protein conserved in bacteria (DUF2087) 179 246 5.3E-26 T 11-11-2016 IPR018656 Domain of unknown function DUF2087 Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 Gene3D G3DSA:3.40.50.300 253 492 8.7E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 Gene3D G3DSA:3.40.50.300 4 230 8.3E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 SMART SM00382 31 217 5.1E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 SMART SM00382 282 478 1.6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 SUPERFAMILY SSF52540 6 228 6.12E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 Pfam PF00005 ABC transporter 274 424 1.7E-16 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 Pfam PF00005 ABC transporter 23 169 1.4E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS16195 5144c11520e6ca15a54fdb6504787cc5 503 SUPERFAMILY SSF52540 256 487 1.01E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26945 b13510e267c318828a8923c5e807fe2d 542 Pfam PF00239 Resolvase, N terminal domain 8 151 7.2E-37 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS26945 b13510e267c318828a8923c5e807fe2d 542 SUPERFAMILY SSF53041 7 151 7.06E-36 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS26945 b13510e267c318828a8923c5e807fe2d 542 Pfam PF07508 Recombinase 184 314 5.3E-22 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS26945 b13510e267c318828a8923c5e807fe2d 542 SMART SM00857 6 151 3.7E-52 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS26945 b13510e267c318828a8923c5e807fe2d 542 Pfam PF13408 Recombinase zinc beta ribbon domain 330 393 2.3E-14 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS26945 b13510e267c318828a8923c5e807fe2d 542 Gene3D G3DSA:3.40.50.1390 8 133 5.8E-30 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS05955 a50038b145653c2926a5ad6ce4c0b134 187 Gene3D G3DSA:3.40.50.150 26 155 3.1E-15 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS05955 a50038b145653c2926a5ad6ce4c0b134 187 Pfam PF00398 Ribosomal RNA adenine dimethylase 32 99 2.9E-5 T 11-11-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Gferi_RS05955 a50038b145653c2926a5ad6ce4c0b134 187 SUPERFAMILY SSF53335 8 158 1.74E-17 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.1E-6 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.1E-6 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 SUPERFAMILY SSF47413 3 48 3.54E-13 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 SMART SM00354 1 63 1.3E-10 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 SUPERFAMILY SSF53822 74 326 8.78E-50 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 Gene3D G3DSA:1.10.260.40 1 48 7.0E-21 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-11-2016 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 Pfam PF13377 Periplasmic binding protein-like domain 168 332 3.7E-35 T 11-11-2016 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 Gene3D G3DSA:3.40.50.2300 75 164 1.3E-6 T 11-11-2016 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.0E-18 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS19855 023a8392ee5d73ecb1dd32f0502f2472 333 Gene3D G3DSA:3.40.50.2300 165 332 1.0E-49 T 11-11-2016 Gferi_RS02265 f8047141773f48e54edf710fa21bceb7 151 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 11 150 23.492 T 11-11-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Gferi_RS02265 f8047141773f48e54edf710fa21bceb7 151 Gene3D G3DSA:3.40.390.30 15 148 6.9E-47 T 11-11-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 Gferi_RS02265 f8047141773f48e54edf710fa21bceb7 151 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 116 126 - T 11-11-2016 IPR020549 Endoribonuclease YbeY, conserved site Gferi_RS02265 f8047141773f48e54edf710fa21bceb7 151 SUPERFAMILY SSF55486 4 149 2.69E-42 T 11-11-2016 Gferi_RS02265 f8047141773f48e54edf710fa21bceb7 151 Pfam PF02130 Uncharacterized protein family UPF0054 15 146 3.4E-45 T 11-11-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Gferi_RS02265 f8047141773f48e54edf710fa21bceb7 151 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 147 1.1E-39 T 11-11-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 Gene3D G3DSA:3.40.50.300 666 712 8.7E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 Gene3D G3DSA:3.40.50.300 591 626 8.7E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 Gene3D G3DSA:3.40.50.300 302 428 8.7E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 SUPERFAMILY SSF52540 670 715 3.19E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 SUPERFAMILY SSF52540 5 630 3.19E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 Gene3D G3DSA:3.40.50.300 192 294 6.5E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 Gene3D G3DSA:3.40.50.300 5 146 6.5E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 Pfam PF13361 UvrD-like helicase C-terminal domain 366 694 7.0E-20 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Gferi_RS09390 fcf6dc35f3ac5526b9e7681f9f39865a 724 Pfam PF00580 UvrD/REP helicase N-terminal domain 5 284 2.8E-44 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:3.90.1110.10 141 294 1.7E-66 T 11-11-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:3.90.1110.10 396 420 1.7E-66 T 11-11-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Pfam PF04560 RNA polymerase Rpb2, domain 7 1085 1160 1.5E-27 T 11-11-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 SUPERFAMILY SSF64484 12 285 0.0 T 11-11-2016 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 SUPERFAMILY SSF64484 398 1169 0.0 T 11-11-2016 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 ProSitePatterns PS01166 RNA polymerases beta chain signature. 936 948 - T 11-11-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Pfam PF00562 RNA polymerase Rpb2, domain 6 696 1083 1.6E-168 T 11-11-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:2.40.270.10 766 793 5.1E-77 T 11-11-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:2.40.270.10 933 1061 5.1E-77 T 11-11-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Pfam PF04561 RNA polymerase Rpb2, domain 2 364 430 1.2E-8 T 11-11-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Pfam PF04561 RNA polymerase Rpb2, domain 2 139 282 1.0E-24 T 11-11-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:3.90.1100.10 19 139 1.3E-151 T 11-11-2016 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:3.90.1100.10 421 567 1.3E-151 T 11-11-2016 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:3.90.1100.10 638 692 1.3E-151 T 11-11-2016 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Pfam PF10385 RNA polymerase beta subunit external 1 domain 567 635 3.4E-27 T 11-11-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Pfam PF04565 RNA polymerase Rpb2, domain 3 489 557 2.7E-30 T 11-11-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:2.40.50.100 694 765 1.5E-29 T 11-11-2016 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:2.30.150.10 568 635 9.8E-27 T 11-11-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1161 12.602 T 11-11-2016 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Pfam PF04563 RNA polymerase beta subunit 27 475 1.4E-26 T 11-11-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 203 910 0.0 T 11-11-2016 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17355 563b32d0f449ada83bb79187268ae38e 1237 Gene3D G3DSA:2.40.50.150 801 932 2.4E-59 T 11-11-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 Gene3D G3DSA:1.10.8.60 343 416 2.1E-22 T 11-11-2016 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 SUPERFAMILY SSF55785 18 136 6.07E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 SUPERFAMILY SSF46689 384 494 9.22E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 Gene3D G3DSA:3.40.50.300 166 342 4.1E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 Gene3D G3DSA:3.30.450.20 19 136 2.4E-6 T 11-11-2016 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 Gene3D G3DSA:1.10.10.60 450 494 7.4E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 SMART SM00382 192 342 3.6E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 475 495 4.4E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 458 475 4.4E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 SUPERFAMILY SSF52540 171 407 2.57E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 196 209 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 384 393 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 Pfam PF02954 Bacterial regulatory protein, Fis family 453 492 7.6E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS03315 5f36af571ce900ff0090fbcd0357acc8 495 Pfam PF00158 Sigma-54 interaction domain 172 336 3.3E-60 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 Pfam PF01434 Peptidase family M41 382 578 4.5E-50 T 11-11-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 586 31.107 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 SUPERFAMILY SSF52540 148 388 3.47E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 Gene3D G3DSA:1.10.8.60 329 394 1.2E-20 T 11-11-2016 Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 ProSitePatterns PS00674 AAA-protein family signature. 290 308 - T 11-11-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 SUPERFAMILY SSF140990 403 579 3.27E-50 T 11-11-2016 Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 Gene3D G3DSA:3.40.50.300 149 328 1.0E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 105 580 2.3E-167 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 189 319 8.7E-44 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 SMART SM00382 185 322 4.0E-26 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25790 be667aa9a2b3141d7a981d3b7972a7da 589 Pfam PF06480 FtsH Extracellular 10 84 7.7E-9 T 11-11-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Gferi_RS06985 0517c4e6328a7f4f412d6bbcc6d7003b 363 SUPERFAMILY SSF81901 168 289 4.45E-12 T 11-11-2016 Gferi_RS06985 0517c4e6328a7f4f412d6bbcc6d7003b 363 Gene3D G3DSA:3.90.550.10 3 130 1.8E-15 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06985 0517c4e6328a7f4f412d6bbcc6d7003b 363 SUPERFAMILY SSF53448 3 151 4.13E-22 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06985 0517c4e6328a7f4f412d6bbcc6d7003b 363 Pfam PF00535 Glycosyl transferase family 2 5 125 5.5E-15 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS06985 0517c4e6328a7f4f412d6bbcc6d7003b 363 Gene3D G3DSA:1.25.40.10 190 347 4.3E-11 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 545 3.9E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 589 3.9E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 531 3.9E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 570 3.9E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 SUPERFAMILY SSF47384 351 435 1.04E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Pfam PF00672 HAMP domain 172 239 1.4E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 481 590 1.2E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 SUPERFAMILY SSF158472 192 242 3.01E-11 T 11-11-2016 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 249 366 2.7E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Gene3D G3DSA:3.30.565.10 420 590 4.8E-51 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Pfam PF16736 Single Cache-like 68 148 3.6E-7 T 11-11-2016 IPR031967 PhoR, single Cache-like domain Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Pfam PF00989 PAS fold 252 358 1.5E-9 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 SMART SM00304 191 243 6.9E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 SMART SM00388 367 434 5.6E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 249 587 3.7E-101 T 11-11-2016 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 SUPERFAMILY SSF55785 240 359 3.14E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Gene3D G3DSA:1.10.287.130 363 419 2.6E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 SUPERFAMILY SSF55874 423 590 1.83E-48 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Gene3D G3DSA:3.30.450.20 251 362 4.7E-12 T 11-11-2016 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Gene3D G3DSA:3.30.450.20 28 164 1.4E-15 T 11-11-2016 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 Pfam PF00512 His Kinase A (phospho-acceptor) domain 367 433 5.1E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 SMART SM00387 480 591 2.5E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS01880 52f5fd4f34d7517411b9ed4ade8035e7 591 SMART SM00091 250 316 1.4E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS08225 2ea550310b9e9f08eb64ff49918581f5 209 Pfam PF07833 Copper amine oxidase N-terminal domain 47 138 1.2E-34 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS08225 2ea550310b9e9f08eb64ff49918581f5 209 SUPERFAMILY SSF55383 49 133 1.83E-28 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS08225 2ea550310b9e9f08eb64ff49918581f5 209 Gene3D G3DSA:3.30.457.10 119 148 2.6E-8 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS08225 2ea550310b9e9f08eb64ff49918581f5 209 Gene3D G3DSA:3.30.457.10 54 118 1.1E-29 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS08225 2ea550310b9e9f08eb64ff49918581f5 209 Gene3D G3DSA:3.30.457.10 30 53 0.001 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS14340 f4e9326d47a34d024ce276e5a7007aa2 190 SUPERFAMILY SSF55469 2 189 5.5E-49 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS14340 f4e9326d47a34d024ce276e5a7007aa2 190 Gene3D G3DSA:3.40.109.10 2 189 7.2E-52 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS14340 f4e9326d47a34d024ce276e5a7007aa2 190 Pfam PF00881 Nitroreductase family 7 169 3.8E-37 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS20140 f72af6e1fa0da1a10fb70aa5db2fd8a4 363 Pfam PF01924 Hydrogenase formation hypA family 13 359 5.3E-153 T 11-11-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 Gferi_RS20140 f72af6e1fa0da1a10fb70aa5db2fd8a4 363 PIRSF PIRSF005622 1 362 8.0E-155 T 11-11-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 Gferi_RS20140 f72af6e1fa0da1a10fb70aa5db2fd8a4 363 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 4 359 4.9E-145 T 11-11-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 Gferi_RS16760 876bda29e6e9f09f82446263e8910e5b 535 Pfam PF01943 Polysaccharide biosynthesis protein 6 309 1.9E-38 T 11-11-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Gferi_RS16760 876bda29e6e9f09f82446263e8910e5b 535 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 366 507 1.6E-29 T 11-11-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Gferi_RS16760 876bda29e6e9f09f82446263e8910e5b 535 PIRSF PIRSF038958 1 524 1.4E-156 T 11-11-2016 IPR024923 Peptidoglycan biosynthesis protein, SpoVB type Gferi_RS11320 f89cf1d176a20338c7574079322a2c9e 373 Pfam PF00534 Glycosyl transferases group 1 184 299 4.6E-24 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS11320 f89cf1d176a20338c7574079322a2c9e 373 SUPERFAMILY SSF53756 2 298 1.99E-46 T 11-11-2016 Gferi_RS11320 f89cf1d176a20338c7574079322a2c9e 373 Gene3D G3DSA:3.40.50.2000 180 298 1.2E-15 T 11-11-2016 Gferi_RS00280 ecb30aa42d2a973a37902c778f546cb9 318 SUPERFAMILY SSF53067 5 312 3.16E-20 T 11-11-2016 Gferi_RS00280 ecb30aa42d2a973a37902c778f546cb9 318 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 6 19 1.5E-10 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS00280 ecb30aa42d2a973a37902c778f546cb9 318 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 1.5E-10 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS00280 ecb30aa42d2a973a37902c778f546cb9 318 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 162 183 1.5E-10 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS00280 ecb30aa42d2a973a37902c778f546cb9 318 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 265 274 1.5E-10 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS00280 ecb30aa42d2a973a37902c778f546cb9 318 Pfam PF00814 Glycoprotease family 51 306 4.1E-27 T 11-11-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS00280 ecb30aa42d2a973a37902c778f546cb9 318 Gene3D G3DSA:3.30.420.40 5 148 3.8E-11 T 11-11-2016 Gferi_RS14640 13ed8b2537496028ca4e2cfdc689a84c 389 TIGRFAM TIGR00261 traB: TraB family protein 11 384 1.1E-115 T 11-11-2016 IPR005230 Pheromone shutdown, TraB, bacterial/archaeal Gferi_RS14640 13ed8b2537496028ca4e2cfdc689a84c 389 Pfam PF01963 TraB family 7 224 4.1E-38 T 11-11-2016 IPR002816 Pheromone shutdown, TraB Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 7 150 2.0E-44 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 Pfam PF13375 RnfC Barrel sandwich hybrid domain 378 437 1.8E-15 T 11-11-2016 IPR026902 RnfC Barrel sandwich hybrid domain Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 PIRSF PIRSF036408 1 443 3.5E-181 T 11-11-2016 IPR017054 Propanediol utilization protein, PduS, predicted Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 Pfam PF13534 4Fe-4S dicluster domain 254 314 7.7E-10 T 11-11-2016 Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 SUPERFAMILY SSF142019 2 166 1.96E-42 T 11-11-2016 Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 Gene3D G3DSA:1.10.1060.10 237 331 9.2E-10 T 11-11-2016 Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 255 266 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 SUPERFAMILY SSF51230 394 433 1.83E-5 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 SUPERFAMILY SSF46548 229 331 2.79E-10 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 Gene3D G3DSA:2.40.50.100 391 433 3.7E-5 T 11-11-2016 Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 SUPERFAMILY SSF142984 160 230 2.75E-12 T 11-11-2016 Gferi_RS15915 5bb7c952803db6033c7a60eeb0546c41 447 Pfam PF10531 SLBB domain 161 207 2.3E-12 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS13350 df94fb42dc730a8ed7db0d8c55acc6c1 152 Pfam PF00583 Acetyltransferase (GNAT) family 73 142 4.4E-10 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS13350 df94fb42dc730a8ed7db0d8c55acc6c1 152 SUPERFAMILY SSF55729 50 146 1.03E-16 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS13350 df94fb42dc730a8ed7db0d8c55acc6c1 152 Gene3D G3DSA:3.40.630.30 12 142 3.3E-16 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS06265 c9a7076936762e685c89a0363953d087 228 SUPERFAMILY SSF51219 1 226 3.92E-69 T 11-11-2016 IPR016031 Tryptophan RNA-binding attenuator protein-like domain Gferi_RS06265 c9a7076936762e685c89a0363953d087 228 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 1 223 5.4E-34 T 11-11-2016 IPR002838 Mitochondrial biogenesis protein AIM24 Gferi_RS06265 c9a7076936762e685c89a0363953d087 228 Gene3D G3DSA:3.60.160.10 1 227 9.7E-78 T 11-11-2016 IPR002838 Mitochondrial biogenesis protein AIM24 Gferi_RS06265 c9a7076936762e685c89a0363953d087 228 Pfam PF01987 Mitochondrial biogenesis AIM24 3 209 2.7E-62 T 11-11-2016 IPR002838 Mitochondrial biogenesis protein AIM24 Gferi_RS01190 b8573a866492b2f317a62e5735009a26 260 Pfam PF00665 Integrase core domain 94 209 2.9E-28 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 Gferi_RS01190 b8573a866492b2f317a62e5735009a26 260 Gene3D G3DSA:3.30.420.10 88 247 4.4E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS01190 b8573a866492b2f317a62e5735009a26 260 SUPERFAMILY SSF53098 87 252 5.31E-41 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS25965 eb57b5dd7f2d5f98bb383eac9d8a4e36 149 Gene3D G3DSA:2.40.50.180 44 80 7.1E-13 T 11-11-2016 Gferi_RS25965 eb57b5dd7f2d5f98bb383eac9d8a4e36 149 Gene3D G3DSA:2.30.30.40 81 132 1.7E-15 T 11-11-2016 Gferi_RS25965 eb57b5dd7f2d5f98bb383eac9d8a4e36 149 SUPERFAMILY SSF50341 2 142 6.28E-40 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS25965 eb57b5dd7f2d5f98bb383eac9d8a4e36 149 Pfam PF01584 CheW-like domain 5 140 4.3E-36 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS25965 eb57b5dd7f2d5f98bb383eac9d8a4e36 149 SMART SM00260 1 138 5.7E-40 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS07635 689e46e699745dbb03ac2bebe039bf5a 233 SUPERFAMILY SSF52172 4 192 1.57E-40 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS07635 689e46e699745dbb03ac2bebe039bf5a 233 Gene3D G3DSA:1.10.10.10 135 232 6.3E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07635 689e46e699745dbb03ac2bebe039bf5a 233 SMART SM00862 154 230 6.5E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07635 689e46e699745dbb03ac2bebe039bf5a 233 Gene3D G3DSA:3.40.50.2300 4 128 3.8E-37 T 11-11-2016 Gferi_RS07635 689e46e699745dbb03ac2bebe039bf5a 233 Pfam PF00072 Response regulator receiver domain 7 115 4.7E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07635 689e46e699745dbb03ac2bebe039bf5a 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 230 1.1E-22 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07635 689e46e699745dbb03ac2bebe039bf5a 233 SMART SM00448 5 115 4.5E-40 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS13565 59425d5483b8df0cfbd725ac5fcedb34 317 Pfam PF01699 Sodium/calcium exchanger protein 4 149 5.2E-31 T 11-11-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Gferi_RS13565 59425d5483b8df0cfbd725ac5fcedb34 317 Pfam PF01699 Sodium/calcium exchanger protein 175 313 2.1E-28 T 11-11-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Gferi_RS13565 59425d5483b8df0cfbd725ac5fcedb34 317 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 5 309 1.7E-74 T 11-11-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 PIRSF PIRSF034834 1 182 5.1E-57 T 11-11-2016 IPR011238 Polyhedral organelle shell protein PduT Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 SMART SM00877 3 77 9.2E-23 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 SMART SM00877 95 173 4.3E-23 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 SUPERFAMILY SSF143414 3 93 2.09E-23 T 11-11-2016 Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 96 154 4.0E-10 T 11-11-2016 Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 60 9.0E-14 T 11-11-2016 Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 SUPERFAMILY SSF143414 95 181 3.79E-21 T 11-11-2016 Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 Gene3D G3DSA:3.40.605.10 74 170 8.4E-4 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 Pfam PF00936 BMC domain 4 76 2.3E-21 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26095 3cd9210d8d73b3033289ddb70ba9a12f 182 Pfam PF00936 BMC domain 96 173 1.1E-18 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS08015 ee06f188e14f4fb7b90da1215d079fab 329 SUPERFAMILY SSF50129 1 152 4.57E-29 T 11-11-2016 IPR011032 GroES-like Gferi_RS08015 ee06f188e14f4fb7b90da1215d079fab 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 127 2.5E-8 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Gferi_RS08015 ee06f188e14f4fb7b90da1215d079fab 329 Gene3D G3DSA:3.40.50.720 155 250 3.2E-17 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS08015 ee06f188e14f4fb7b90da1215d079fab 329 SUPERFAMILY SSF51735 120 286 8.26E-29 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS08015 ee06f188e14f4fb7b90da1215d079fab 329 Gene3D G3DSA:3.90.180.10 1 154 1.7E-38 T 11-11-2016 IPR011032 GroES-like Gferi_RS08015 ee06f188e14f4fb7b90da1215d079fab 329 Pfam PF13602 Zinc-binding dehydrogenase 190 321 4.5E-15 T 11-11-2016 Gferi_RS08015 ee06f188e14f4fb7b90da1215d079fab 329 SMART SM00829 13 323 1.2E-12 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Gferi_RS08015 ee06f188e14f4fb7b90da1215d079fab 329 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 148 169 - T 11-11-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Gferi_RS16885 d5908137a1dae431f9ba6fd495a8980c 309 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 10 305 6.7E-107 T 11-11-2016 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS16885 d5908137a1dae431f9ba6fd495a8980c 309 SUPERFAMILY SSF52540 2 306 2.43E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16885 d5908137a1dae431f9ba6fd495a8980c 309 Gene3D G3DSA:3.40.50.300 13 56 2.1E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16885 d5908137a1dae431f9ba6fd495a8980c 309 Pfam PF03308 ArgK protein 16 273 7.3E-96 T 11-11-2016 Gferi_RS16885 d5908137a1dae431f9ba6fd495a8980c 309 Gene3D G3DSA:3.40.50.300 57 243 1.1E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16885 d5908137a1dae431f9ba6fd495a8980c 309 SMART SM00382 42 210 1.9E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04670 1fe62c496ce4d82b88003cb2cd47a9c4 394 SUPERFAMILY SSF56281 9 283 5.63E-51 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS04670 1fe62c496ce4d82b88003cb2cd47a9c4 394 Gene3D G3DSA:3.60.15.10 3 245 2.1E-88 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS04670 1fe62c496ce4d82b88003cb2cd47a9c4 394 Pfam PF00258 Flavodoxin 255 385 5.2E-14 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Gferi_RS04670 1fe62c496ce4d82b88003cb2cd47a9c4 394 Gene3D G3DSA:3.40.50.360 249 391 2.9E-48 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS04670 1fe62c496ce4d82b88003cb2cd47a9c4 394 PIRSF PIRSF005243 1 394 1.2E-150 T 11-11-2016 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 Gferi_RS04670 1fe62c496ce4d82b88003cb2cd47a9c4 394 SUPERFAMILY SSF52218 252 393 1.77E-39 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS04670 1fe62c496ce4d82b88003cb2cd47a9c4 394 SMART SM00849 35 226 1.9E-24 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 SUPERFAMILY SSF142984 161 230 8.24E-14 T 11-11-2016 Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 253 264 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 9 150 8.4E-44 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 SUPERFAMILY SSF46548 248 329 9.42E-10 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 Pfam PF13375 RnfC Barrel sandwich hybrid domain 380 441 2.0E-15 T 11-11-2016 IPR026902 RnfC Barrel sandwich hybrid domain Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 Pfam PF10531 SLBB domain 163 208 8.1E-14 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 SUPERFAMILY SSF142019 4 167 7.45E-44 T 11-11-2016 Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 Gene3D G3DSA:1.10.1060.10 189 335 2.1E-10 T 11-11-2016 Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 PIRSF PIRSF036408 1 443 1.2E-180 T 11-11-2016 IPR017054 Propanediol utilization protein, PduS, predicted Gferi_RS26090 0dd18cd752b9b0121a2624fde80843b7 449 Pfam PF13534 4Fe-4S dicluster domain 252 313 4.7E-8 T 11-11-2016 Gferi_RS04395 9dd5bf0cb401ac11a03c7aa50f5f8c48 87 SUPERFAMILY SSF55594 1 87 3.4E-29 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04395 9dd5bf0cb401ac11a03c7aa50f5f8c48 87 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.8E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04395 9dd5bf0cb401ac11a03c7aa50f5f8c48 87 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.8E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04395 9dd5bf0cb401ac11a03c7aa50f5f8c48 87 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.8E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04395 9dd5bf0cb401ac11a03c7aa50f5f8c48 87 Pfam PF00381 PTS HPr component phosphorylation site 4 82 5.4E-29 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04395 9dd5bf0cb401ac11a03c7aa50f5f8c48 87 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 2.1E-30 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04395 9dd5bf0cb401ac11a03c7aa50f5f8c48 87 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS04395 9dd5bf0cb401ac11a03c7aa50f5f8c48 87 Gene3D G3DSA:3.30.1340.10 1 87 7.1E-33 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19275 387dbf9679552d4ba602cb4787517864 182 Pfam PF07883 Cupin domain 111 176 1.4E-9 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS19275 387dbf9679552d4ba602cb4787517864 182 Gene3D G3DSA:2.60.120.10 105 182 2.9E-23 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS19275 387dbf9679552d4ba602cb4787517864 182 Pfam PF01381 Helix-turn-helix 12 66 1.2E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS19275 387dbf9679552d4ba602cb4787517864 182 Gene3D G3DSA:1.10.260.40 7 104 3.4E-23 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19275 387dbf9679552d4ba602cb4787517864 182 SMART SM00530 11 66 1.3E-12 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS19275 387dbf9679552d4ba602cb4787517864 182 SUPERFAMILY SSF47413 5 72 7.04E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19275 387dbf9679552d4ba602cb4787517864 182 SUPERFAMILY SSF51182 59 181 2.24E-17 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS09805 01db96737b69c2b433e070f582d4b9be 261 SMART SM00382 25 214 1.6E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09805 01db96737b69c2b433e070f582d4b9be 261 SUPERFAMILY SSF52540 2 231 1.96E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09805 01db96737b69c2b433e070f582d4b9be 261 Pfam PF00005 ABC transporter 16 164 4.0E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS09805 01db96737b69c2b433e070f582d4b9be 261 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09805 01db96737b69c2b433e070f582d4b9be 261 Gene3D G3DSA:3.40.50.300 2 235 7.5E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 Gene3D G3DSA:3.40.47.10 50 79 2.5E-4 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 Gene3D G3DSA:3.50.30.70 97 247 2.2E-69 T 11-11-2016 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 SUPERFAMILY SSF53067 255 403 1.94E-65 T 11-11-2016 Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 SUPERFAMILY SSF53067 1 93 1.94E-65 T 11-11-2016 Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 PIRSF PIRSF011502 1 608 0.0 T 11-11-2016 IPR009191 Diol dehydratase-reactivating factor alpha subunit Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 Pfam PF08841 Diol dehydratase reactivase ATPase-like domain 275 601 2.3E-165 T 11-11-2016 IPR030994 Diol dehydratase reactivase ATPase-like domain Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 Gene3D G3DSA:3.30.420.40 298 445 1.9E-42 T 11-11-2016 Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 Gene3D G3DSA:3.30.420.40 471 604 8.8E-34 T 11-11-2016 Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 TIGRFAM TIGR04491 reactive_PduG: diol dehydratase reactivase alpha subunit 3 601 1.8E-303 T 11-11-2016 IPR009191 Diol dehydratase-reactivating factor alpha subunit Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 SUPERFAMILY SSF53067 407 600 9.15E-30 T 11-11-2016 Gferi_RS18310 690772f29da693b748b920ef1fa7081d 610 SUPERFAMILY SSF82317 93 254 7.98E-67 T 11-11-2016 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 Gene3D G3DSA:1.10.10.60 10 44 2.1E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 SUPERFAMILY SSF48498 84 206 3.38E-30 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 SUPERFAMILY SSF46689 9 78 4.05E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 Gene3D G3DSA:1.10.10.60 45 63 6.2E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 1.7E-15 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 Gene3D G3DSA:1.10.357.10 64 206 3.5E-38 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.1E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS14090 cdd3e3fba94cf72ddb5e850e71b3754e 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.1E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS13425 a1b985be9f7a8d0d2e908a8a8c5e7c4c 380 ProSitePatterns PS00787 Chorismate synthase signature 1. 8 23 - T 11-11-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Gferi_RS13425 a1b985be9f7a8d0d2e908a8a8c5e7c4c 380 Hamap MF_00300 Chorismate synthase [aroC]. 2 366 36.166 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Gferi_RS13425 a1b985be9f7a8d0d2e908a8a8c5e7c4c 380 SUPERFAMILY SSF103263 2 376 3.01E-139 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Gferi_RS13425 a1b985be9f7a8d0d2e908a8a8c5e7c4c 380 ProSitePatterns PS00788 Chorismate synthase signature 2. 127 143 - T 11-11-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Gferi_RS13425 a1b985be9f7a8d0d2e908a8a8c5e7c4c 380 Pfam PF01264 Chorismate synthase 2 356 4.0E-123 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Gferi_RS13425 a1b985be9f7a8d0d2e908a8a8c5e7c4c 380 Gene3D G3DSA:3.60.150.10 1 377 4.0E-150 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Gferi_RS13425 a1b985be9f7a8d0d2e908a8a8c5e7c4c 380 TIGRFAM TIGR00033 aroC: chorismate synthase 2 363 1.2E-127 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Gferi_RS13425 a1b985be9f7a8d0d2e908a8a8c5e7c4c 380 PIRSF PIRSF001456 1 377 3.7E-129 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 Gferi_RS16435 11084035b3881d68d53accbb47ce3757 429 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 425 1.9E-146 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS16435 11084035b3881d68d53accbb47ce3757 429 Gene3D G3DSA:3.90.1150.10 291 427 1.0E-48 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS16435 11084035b3881d68d53accbb47ce3757 429 SUPERFAMILY SSF53383 7 424 1.25E-131 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS16435 11084035b3881d68d53accbb47ce3757 429 Gene3D G3DSA:3.40.640.10 7 289 1.3E-127 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS16435 11084035b3881d68d53accbb47ce3757 429 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 201 215 - T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS16435 11084035b3881d68d53accbb47ce3757 429 PIRSF PIRSF001434 1 428 1.4E-131 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS16435 11084035b3881d68d53accbb47ce3757 429 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 7 425 1.1E-208 T 11-11-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 SMART SM00436 134 224 3.6E-23 T 11-11-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 Pfam PF01131 DNA topoisomerase 161 576 6.9E-114 T 11-11-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 SMART SM00493 11 134 1.9E-11 T 11-11-2016 IPR006171 Toprim domain Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 Gene3D G3DSA:2.70.20.10 363 470 2.0E-30 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 Pfam PF01751 Toprim domain 13 141 8.9E-12 T 11-11-2016 IPR006171 Toprim domain Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 Gene3D G3DSA:1.10.460.10 164 218 9.6E-48 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 Gene3D G3DSA:1.10.460.10 471 589 9.6E-48 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 Gene3D G3DSA:1.10.290.10 274 362 2.0E-25 T 11-11-2016 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 SMART SM00437 263 542 1.7E-60 T 11-11-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 505 519 4.7E-20 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 305 314 4.7E-20 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 108 121 4.7E-20 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 4.7E-20 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 TIGRFAM TIGR01056 topB: DNA topoisomerase III 12 591 4.1E-163 T 11-11-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 SUPERFAMILY SSF56712 12 622 3.79E-158 T 11-11-2016 IPR023405 DNA topoisomerase, type IA, core domain Gferi_RS03775 591a36c42f897e069c30dda9b2603b74 707 Gene3D G3DSA:3.40.50.140 12 161 2.1E-49 T 11-11-2016 IPR006171 Toprim domain Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 SUPERFAMILY SSF55681 3 316 1.19E-102 T 11-11-2016 Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 Gene3D G3DSA:3.30.930.10 1 183 3.7E-98 T 11-11-2016 Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 Gene3D G3DSA:3.30.930.10 219 319 3.7E-98 T 11-11-2016 Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 SUPERFAMILY SSF52954 326 419 4.23E-24 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 4 407 1.4E-156 T 11-11-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 417 34.438 T 11-11-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 Gene3D G3DSA:3.40.50.800 323 416 1.8E-27 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 Pfam PF13393 Histidyl-tRNA synthetase 8 310 3.2E-47 T 11-11-2016 Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 Pfam PF03129 Anticodon binding domain 329 417 3.4E-17 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS26700 5572ed12e7bc390aed758a1c98d32c07 420 PIRSF PIRSF001549 1 419 6.9E-130 T 11-11-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Gferi_RS04825 14f87aee66788facf3c2e968cad57344 128 Gene3D G3DSA:3.10.450.50 9 106 0.001 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS04825 14f87aee66788facf3c2e968cad57344 128 SUPERFAMILY SSF54427 2 122 5.7E-21 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 Pfam PF00342 Phosphoglucose isomerase 67 292 9.9E-16 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 Gene3D G3DSA:3.40.50.10490 196 414 1.8E-91 T 11-11-2016 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 PRINTS PR00662 Glucose-6-phosphate isomerase signature 74 93 3.8E-27 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 PRINTS PR00662 Glucose-6-phosphate isomerase signature 270 291 3.8E-27 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 PRINTS PR00662 Glucose-6-phosphate isomerase signature 405 418 3.8E-27 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 PRINTS PR00662 Glucose-6-phosphate isomerase signature 391 405 3.8E-27 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 PRINTS PR00662 Glucose-6-phosphate isomerase signature 373 391 3.8E-27 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 PRINTS PR00662 Glucose-6-phosphate isomerase signature 195 213 3.8E-27 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 405 422 - T 11-11-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 Gene3D G3DSA:3.40.50.10490 66 195 2.9E-27 T 11-11-2016 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 SUPERFAMILY SSF53697 12 444 2.09E-138 T 11-11-2016 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 1 432 25.138 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS23075 6464fab1cb0a593ee1a280551cf5c7d3 447 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 199 212 - T 11-11-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 SUPERFAMILY SSF52540 361 604 9.23E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Pfam PF00158 Sigma-54 interaction domain 361 528 7.0E-72 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 385 398 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 SMART SM00091 107 173 2.3E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 SMART SM00091 224 291 1.1E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Gene3D G3DSA:3.30.450.20 109 207 1.6E-14 T 11-11-2016 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Gene3D G3DSA:3.30.1340.10 2 85 1.6E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Gene3D G3DSA:3.40.50.300 358 533 1.2E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Gene3D G3DSA:1.10.10.60 628 669 2.5E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 SUPERFAMILY SSF55594 2 87 1.44E-12 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Pfam PF00381 PTS HPr component phosphorylation site 2 84 3.3E-16 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Gene3D G3DSA:1.10.8.60 534 613 6.2E-26 T 11-11-2016 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 221 334 4.2E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 111 213 2.0E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 SUPERFAMILY SSF55785 111 202 8.86E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 SUPERFAMILY SSF46689 574 669 1.3E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 SMART SM00382 381 524 5.5E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 574 583 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Pfam PF00989 PAS fold 224 320 2.2E-12 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Pfam PF00989 PAS fold 111 206 7.3E-11 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 Gene3D G3DSA:3.30.450.20 224 339 1.3E-16 T 11-11-2016 Gferi_RS13100 b5f0dfbd5034583a96dae1f2131b0c67 673 SUPERFAMILY SSF55785 213 320 4.19E-16 T 11-11-2016 IPR000014 PAS domain Gferi_RS26065 3a70dbd8f7f4109a4fc2b9f253954c4f 273 Gene3D G3DSA:3.30.420.40 8 149 1.3E-26 T 11-11-2016 Gferi_RS26065 3a70dbd8f7f4109a4fc2b9f253954c4f 273 SUPERFAMILY SSF53067 30 133 5.24E-11 T 11-11-2016 Gferi_RS26065 3a70dbd8f7f4109a4fc2b9f253954c4f 273 Pfam PF11104 Type IV pilus assembly protein PilM; 142 253 3.4E-8 T 11-11-2016 IPR005883 Type IV pilus assembly protein PilM Gferi_RS26065 3a70dbd8f7f4109a4fc2b9f253954c4f 273 SUPERFAMILY SSF53067 141 269 2.92E-22 T 11-11-2016 Gferi_RS26065 3a70dbd8f7f4109a4fc2b9f253954c4f 273 Gene3D G3DSA:3.30.420.40 150 253 3.3E-39 T 11-11-2016 Gferi_RS26065 3a70dbd8f7f4109a4fc2b9f253954c4f 273 TIGRFAM TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein 32 270 4.4E-107 T 11-11-2016 IPR013366 Ethanolamine utilisation EutJ Gferi_RS12500 a8b972490eae97d434d627984c382ec0 262 SUPERFAMILY SSF55154 10 170 6.32E-7 T 11-11-2016 IPR033469 CYTH-like domain Reactome: R-HSA-196819 Gferi_RS12500 a8b972490eae97d434d627984c382ec0 262 Pfam PF09359 VTC domain 7 227 7.1E-39 T 11-11-2016 IPR018966 VTC domain Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 SUPERFAMILY SSF55073 304 460 3.92E-55 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 SMART SM00091 173 242 0.0017 T 11-11-2016 IPR000014 PAS domain Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 170 294 2.8E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 Gene3D G3DSA:3.30.450.20 168 286 4.6E-23 T 11-11-2016 Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 Gene3D G3DSA:3.30.70.270 301 460 2.8E-61 T 11-11-2016 Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 SUPERFAMILY SSF55785 178 290 2.27E-19 T 11-11-2016 IPR000014 PAS domain Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 SMART SM00086 246 288 3.0E-7 T 11-11-2016 IPR001610 PAC motif Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 297 457 1.2E-50 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 Pfam PF00990 Diguanylate cyclase, GGDEF domain 299 455 9.8E-54 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 Pfam PF08447 PAS fold 198 281 4.6E-18 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 Gferi_RS19895 b3b15ae34cd00fa4d6b93b012fb67998 464 SMART SM00267 288 459 4.1E-70 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 SUPERFAMILY SSF63411 4 145 6.78E-58 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 Gene3D G3DSA:3.30.1360.80 6 145 5.6E-59 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 11 144 8.0E-43 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 6 145 5.8E-53 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 116 135 3.7E-39 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 7 25 3.7E-39 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 30 48 3.7E-39 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 51 69 3.7E-39 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 75 93 3.7E-39 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 3 150 33.175 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16415 4a669c4b948abe2ac9df8bee209363e6 150 PIRSF PIRSF006160 3 149 9.5E-60 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 SUPERFAMILY SSF53067 5 126 6.47E-34 T 11-11-2016 Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 SUPERFAMILY SSF53067 129 305 1.01E-44 T 11-11-2016 Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 Gene3D G3DSA:3.30.420.150 129 303 5.7E-47 T 11-11-2016 Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 Gene3D G3DSA:1.10.3210.10 322 473 2.6E-10 T 11-11-2016 IPR006674 HD domain Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 SUPERFAMILY SSF109604 316 504 1.06E-39 T 11-11-2016 Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 Gene3D G3DSA:3.30.420.40 3 125 7.6E-41 T 11-11-2016 Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 4 302 3.3E-97 T 11-11-2016 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 Pfam PF02541 Ppx/GppA phosphatase family 25 302 8.3E-63 T 11-11-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 Pfam PF01966 HD domain 334 452 2.9E-7 T 11-11-2016 IPR006674 HD domain Gferi_RS16620 0474b74744fac4497562ccbe05567c97 505 PIRSF PIRSF001267 1 501 2.5E-95 T 11-11-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 Gferi_RS03460 49c5371df94931c62831acccaf7a33fe 262 Gene3D G3DSA:3.20.20.150 8 255 5.0E-25 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS03460 49c5371df94931c62831acccaf7a33fe 262 Pfam PF01261 Xylose isomerase-like TIM barrel 20 213 1.0E-14 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS03460 49c5371df94931c62831acccaf7a33fe 262 SUPERFAMILY SSF51658 6 239 2.88E-31 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS01635 e3f9318c702bd3ab4c98fe888238fc61 184 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 181 5.0E-51 T 11-11-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS01635 e3f9318c702bd3ab4c98fe888238fc61 184 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 117 123 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS01635 e3f9318c702bd3ab4c98fe888238fc61 184 Gene3D G3DSA:3.40.50.150 1 182 1.7E-60 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01635 e3f9318c702bd3ab4c98fe888238fc61 184 Pfam PF03602 Conserved hypothetical protein 95 1 180 1.5E-56 T 11-11-2016 Gferi_RS01635 e3f9318c702bd3ab4c98fe888238fc61 184 SUPERFAMILY SSF53335 1 180 4.29E-50 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01635 e3f9318c702bd3ab4c98fe888238fc61 184 PIRSF PIRSF004553 1 184 6.8E-54 T 11-11-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Gene3D G3DSA:3.40.50.300 7 285 2.7E-106 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Hamap MF_00054_B Elongation factor G [fusA]. 6 689 112.057 T 11-11-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Gene3D G3DSA:3.30.70.240 597 683 7.8E-35 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Pfam PF00679 Elongation factor G C-terminus 598 684 4.0E-31 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 180 5.3E-34 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Gene3D G3DSA:3.30.70.870 404 478 3.0E-37 T 11-11-2016 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Pfam PF03144 Elongation factor Tu domain 2 322 389 1.4E-17 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 TIGRFAM TIGR00484 EF-G: translation elongation factor G 3 687 0.0 T 11-11-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 PRINTS PR00315 GTP-binding elongation factor signature 130 139 9.7E-15 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 PRINTS PR00315 GTP-binding elongation factor signature 58 66 9.7E-15 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 PRINTS PR00315 GTP-binding elongation factor signature 12 25 9.7E-15 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 PRINTS PR00315 GTP-binding elongation factor signature 78 88 9.7E-15 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 PRINTS PR00315 GTP-binding elongation factor signature 94 105 9.7E-15 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Pfam PF14492 Elongation Factor G, domain II 402 476 1.1E-32 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Gene3D G3DSA:2.40.30.10 303 403 1.9E-40 T 11-11-2016 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 SUPERFAMILY SSF54980 400 478 7.55E-24 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 SMART SM00889 478 596 7.5E-70 T 11-11-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 SUPERFAMILY SSF54980 598 688 9.11E-31 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Pfam PF00009 Elongation factor Tu GTP binding domain 9 280 1.3E-67 T 11-11-2016 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Pfam PF03764 Elongation factor G, domain IV 477 596 2.5E-46 T 11-11-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 SUPERFAMILY SSF54211 477 597 2.78E-44 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 Gene3D G3DSA:3.30.230.10 482 596 1.7E-49 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 SUPERFAMILY SSF52540 6 280 1.7E-108 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 SUPERFAMILY SSF50447 264 402 1.06E-38 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS17380 b367590a915b63d5f0b24e4e065548bd 689 SMART SM00838 598 685 4.3E-58 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS02715 cbc4b5478c6e3218e20b4edf691a2b05 129 Pfam PF13380 CoA binding domain 15 127 2.0E-33 T 11-11-2016 IPR003781 CoA-binding GO:0048037 Gferi_RS02715 cbc4b5478c6e3218e20b4edf691a2b05 129 Gene3D G3DSA:3.40.50.720 7 126 2.8E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02715 cbc4b5478c6e3218e20b4edf691a2b05 129 SUPERFAMILY SSF51735 7 126 6.7E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02715 cbc4b5478c6e3218e20b4edf691a2b05 129 SMART SM00881 10 102 2.1E-17 T 11-11-2016 IPR003781 CoA-binding GO:0048037 Gferi_RS17460 20d4e19b0f15ab7397e348d211c9be84 61 SUPERFAMILY SSF57716 4 61 2.21E-22 T 11-11-2016 Gferi_RS17460 20d4e19b0f15ab7397e348d211c9be84 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 26.055 T 11-11-2016 IPR023053 Ribosomal protein S14, type Z Gferi_RS17460 20d4e19b0f15ab7397e348d211c9be84 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 11-11-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17460 20d4e19b0f15ab7397e348d211c9be84 61 Pfam PF00253 Ribosomal protein S14p/S29e 9 60 3.3E-27 T 11-11-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17460 20d4e19b0f15ab7397e348d211c9be84 61 Gene3D G3DSA:4.10.830.10 2 61 2.8E-29 T 11-11-2016 Gferi_RS08515 e82d2c22408302c233f8caeb12f95684 226 Gene3D G3DSA:3.40.50.360 4 144 6.0E-13 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS08515 e82d2c22408302c233f8caeb12f95684 226 Pfam PF03358 NADPH-dependent FMN reductase 6 167 5.5E-7 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS08515 e82d2c22408302c233f8caeb12f95684 226 SUPERFAMILY SSF52218 5 146 5.66E-15 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 SUPERFAMILY SSF46689 564 654 6.27E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 437 452 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 Gene3D G3DSA:1.10.10.60 596 655 2.7E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 Pfam PF00158 Sigma-54 interaction domain 350 517 2.8E-68 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 Gene3D G3DSA:3.40.50.300 346 523 1.0E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 SMART SM00382 370 518 2.4E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 Gene3D G3DSA:1.10.8.60 524 595 6.2E-22 T 11-11-2016 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 Pfam PF02954 Bacterial regulatory protein, Fis family 612 652 1.8E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 SMART SM00091 223 290 5.1E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 Gene3D G3DSA:3.30.450.40 164 210 1.8E-4 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 Gene3D G3DSA:3.30.450.20 221 328 1.4E-12 T 11-11-2016 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 Pfam PF13426 PAS domain 234 328 6.4E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 SUPERFAMILY SSF55781 72 209 5.4E-8 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 SUPERFAMILY SSF52540 349 593 1.11E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 SUPERFAMILY SSF55785 212 326 1.2E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 618 635 9.1E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 635 655 9.1E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 374 387 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS24880 99d1cc0d3100c0a739d8ae4d62865e99 656 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 564 573 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 Gene3D G3DSA:3.40.1110.10 332 439 1.9E-18 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 69 615 3.7E-169 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 SUPERFAMILY SSF81653 121 218 6.93E-25 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 92 592 3.2E-82 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 Pfam PF00702 haloacid dehalogenase-like hydrolase 308 525 1.0E-39 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 Pfam PF00122 E1-E2 ATPase 92 301 1.1E-58 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 Gene3D G3DSA:2.70.150.10 113 219 7.8E-29 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 Gene3D G3DSA:3.40.50.1000 281 326 1.1E-42 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 Gene3D G3DSA:3.40.50.1000 440 581 1.1E-42 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 SUPERFAMILY SSF81665 219 304 2.35E-10 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 SUPERFAMILY SSF81665 562 591 2.35E-10 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 SUPERFAMILY SSF81665 75 122 2.35E-10 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 73 615 4.8E-128 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 SUPERFAMILY SSF56784 369 612 2.58E-52 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 SUPERFAMILY SSF56784 309 328 2.58E-52 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 312 318 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 310 324 1.4E-26 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 459 469 1.4E-26 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 437 448 1.4E-26 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 168 182 1.4E-26 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 536 548 1.4E-26 T 11-11-2016 Gferi_RS08145 82accd238180df33bcc8d0b966a49293 640 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 512 531 1.4E-26 T 11-11-2016 Gferi_RS10040 d55d7bd3cacb5d6cafa06c29454d4587 207 Pfam PF02581 Thiamine monophosphate synthase/TENI 9 189 6.3E-68 T 11-11-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10040 d55d7bd3cacb5d6cafa06c29454d4587 207 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 8 201 5.0E-69 T 11-11-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10040 d55d7bd3cacb5d6cafa06c29454d4587 207 SUPERFAMILY SSF51391 5 204 2.22E-67 T 11-11-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10040 d55d7bd3cacb5d6cafa06c29454d4587 207 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 6 207 29.278 T 11-11-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10040 d55d7bd3cacb5d6cafa06c29454d4587 207 Gene3D G3DSA:3.20.20.70 2 206 3.4E-77 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS24890 37a132f00c357a09149697e9b1003723 318 Pfam PF00676 Dehydrogenase E1 component 5 299 9.5E-98 T 11-11-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Gferi_RS24890 37a132f00c357a09149697e9b1003723 318 Gene3D G3DSA:3.40.50.970 1 316 7.1E-135 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS24890 37a132f00c357a09149697e9b1003723 318 SUPERFAMILY SSF52518 2 314 3.37E-104 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS12285 1a2afbf2b2f631beaa67929be82415c5 102 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 51 62 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS12285 1a2afbf2b2f631beaa67929be82415c5 102 SUPERFAMILY SSF54862 30 100 2.68E-21 T 11-11-2016 Gferi_RS12285 1a2afbf2b2f631beaa67929be82415c5 102 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 81 92 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS12285 1a2afbf2b2f631beaa67929be82415c5 102 Pfam PF14697 4Fe-4S dicluster domain 47 93 1.4E-9 T 11-11-2016 Gferi_RS12285 1a2afbf2b2f631beaa67929be82415c5 102 Gene3D G3DSA:3.30.70.20 38 98 2.4E-17 T 11-11-2016 Gferi_RS12285 1a2afbf2b2f631beaa67929be82415c5 102 TIGRFAM TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family 25 101 7.1E-30 T 11-11-2016 IPR011898 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0051539 Gferi_RS15670 7b51743cd9870a963cac57ef3bdb481f 139 Gene3D G3DSA:2.60.40.790 8 139 6.1E-35 T 11-11-2016 IPR008978 HSP20-like chaperone Gferi_RS15670 7b51743cd9870a963cac57ef3bdb481f 139 Pfam PF00011 Hsp20/alpha crystallin family 39 139 3.8E-18 T 11-11-2016 IPR002068 Alpha crystallin/Hsp20 domain Gferi_RS15670 7b51743cd9870a963cac57ef3bdb481f 139 SUPERFAMILY SSF49764 20 135 2.96E-30 T 11-11-2016 IPR008978 HSP20-like chaperone Gferi_RS09825 b7dd687f967f639b8fb888f699d3d3fb 476 SMART SM00725 46 169 0.0024 T 11-11-2016 IPR006635 NEAT domain Gferi_RS09825 b7dd687f967f639b8fb888f699d3d3fb 476 SUPERFAMILY SSF158911 48 166 4.05E-11 T 11-11-2016 Gferi_RS09825 b7dd687f967f639b8fb888f699d3d3fb 476 Pfam PF00395 S-layer homology domain 276 314 6.0E-9 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS09825 b7dd687f967f639b8fb888f699d3d3fb 476 Pfam PF00395 S-layer homology domain 411 448 7.3E-8 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS09825 b7dd687f967f639b8fb888f699d3d3fb 476 Pfam PF00395 S-layer homology domain 335 378 7.1E-13 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS09825 b7dd687f967f639b8fb888f699d3d3fb 476 Pfam PF05031 Iron Transport-associated domain 44 163 1.2E-15 T 11-11-2016 IPR006635 NEAT domain Gferi_RS20915 526ae2297972774aa9108412a02a48dd 460 Gene3D G3DSA:3.40.640.10 60 302 2.4E-92 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS20915 526ae2297972774aa9108412a02a48dd 460 Hamap MF_00544 Tryptophanase [tnaA]. 2 459 100.13 T 11-11-2016 IPR013440 Tryptophanase GO:0006568|GO:0009034 KEGG: 00380+4.1.99.1 Gferi_RS20915 526ae2297972774aa9108412a02a48dd 460 Pfam PF01212 Beta-eliminating lyase 47 425 4.2E-99 T 11-11-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Gferi_RS20915 526ae2297972774aa9108412a02a48dd 460 SUPERFAMILY SSF53383 5 459 4.03E-142 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS20915 526ae2297972774aa9108412a02a48dd 460 Gene3D G3DSA:3.90.1150.10 303 458 2.6E-64 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS20915 526ae2297972774aa9108412a02a48dd 460 PIRSF PIRSF001386 1 460 4.7E-222 T 11-11-2016 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1 Gferi_RS20915 526ae2297972774aa9108412a02a48dd 460 ProSitePatterns PS00853 Beta-eliminating lyases pyridoxal-phosphate attachment site. 249 267 - T 11-11-2016 IPR018176 Tryptophanase, conserved site KEGG: 00380+4.1.99.1 Gferi_RS23760 7a28ceccbc3007420b52271819ca23a6 462 Pfam PF01554 MatE 23 183 1.6E-26 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS23760 7a28ceccbc3007420b52271819ca23a6 462 Pfam PF01554 MatE 246 403 1.0E-18 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS23760 7a28ceccbc3007420b52271819ca23a6 462 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 417 3.6E-61 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS23760 7a28ceccbc3007420b52271819ca23a6 462 PIRSF PIRSF006603 1 451 2.3E-87 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS26255 73595461fb176a0082848c6fd19cf941 178 Pfam PF07456 Heptaprenyl diphosphate synthase component I 13 154 2.4E-44 T 11-11-2016 IPR010898 Heptaprenyl diphosphate synthase component I Gferi_RS26255 73595461fb176a0082848c6fd19cf941 178 PIRSF PIRSF027391 1 175 1.2E-46 T 11-11-2016 IPR014535 Predicted heptaprenyl diphosphate synthase, component I Gferi_RS16440 7da6276a23e2f3d2e85d976a4b8a680d 152 Pfam PF04073 Aminoacyl-tRNA editing domain 26 141 3.2E-25 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS16440 7da6276a23e2f3d2e85d976a4b8a680d 152 SUPERFAMILY SSF55826 5 152 8.11E-37 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS16440 7da6276a23e2f3d2e85d976a4b8a680d 152 Gene3D G3DSA:3.90.960.10 1 152 7.0E-45 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS05300 6f437425c6645b5422da492ae072e056 598 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS05300 6f437425c6645b5422da492ae072e056 598 Pfam PF00664 ABC transporter transmembrane region 33 295 3.7E-43 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS05300 6f437425c6645b5422da492ae072e056 598 Gene3D G3DSA:3.40.50.300 355 582 3.3E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05300 6f437425c6645b5422da492ae072e056 598 Pfam PF00005 ABC transporter 371 520 5.3E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS05300 6f437425c6645b5422da492ae072e056 598 SUPERFAMILY SSF52540 348 584 2.51E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05300 6f437425c6645b5422da492ae072e056 598 SMART SM00382 380 574 4.9E-16 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05300 6f437425c6645b5422da492ae072e056 598 SUPERFAMILY SSF90123 22 334 5.62E-67 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS05300 6f437425c6645b5422da492ae072e056 598 Gene3D G3DSA:1.20.1560.10 25 332 8.4E-69 T 11-11-2016 Gferi_RS24930 7ee3078169e04a5974ee8a076754b33d 231 SMART SM00862 146 221 3.7E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS24930 7ee3078169e04a5974ee8a076754b33d 231 SUPERFAMILY SSF52172 1 118 4.13E-38 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS24930 7ee3078169e04a5974ee8a076754b33d 231 Gene3D G3DSA:1.10.10.10 125 222 1.7E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24930 7ee3078169e04a5974ee8a076754b33d 231 Pfam PF00072 Response regulator receiver domain 3 113 1.8E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS24930 7ee3078169e04a5974ee8a076754b33d 231 Gene3D G3DSA:3.40.50.2300 1 120 1.5E-34 T 11-11-2016 Gferi_RS24930 7ee3078169e04a5974ee8a076754b33d 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 221 1.0E-19 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS24930 7ee3078169e04a5974ee8a076754b33d 231 SUPERFAMILY SSF46894 125 221 3.68E-23 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS24930 7ee3078169e04a5974ee8a076754b33d 231 SMART SM00448 1 112 4.3E-38 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05520 02bf003bdb13b5bec54cf00d473504a9 614 Gene3D G3DSA:3.40.50.300 353 584 5.2E-77 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05520 02bf003bdb13b5bec54cf00d473504a9 614 Gene3D G3DSA:1.20.1560.10 6 340 9.1E-77 T 11-11-2016 Gferi_RS05520 02bf003bdb13b5bec54cf00d473504a9 614 Pfam PF00005 ABC transporter 370 517 4.5E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS05520 02bf003bdb13b5bec54cf00d473504a9 614 Pfam PF00664 ABC transporter transmembrane region 22 309 6.1E-46 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS05520 02bf003bdb13b5bec54cf00d473504a9 614 SUPERFAMILY SSF52540 348 589 2.95E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05520 02bf003bdb13b5bec54cf00d473504a9 614 SUPERFAMILY SSF90123 6 339 1.12E-74 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS05520 02bf003bdb13b5bec54cf00d473504a9 614 SMART SM00382 379 565 4.7E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05520 02bf003bdb13b5bec54cf00d473504a9 614 ProSitePatterns PS00211 ABC transporters family signature. 491 505 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 Gene3D G3DSA:3.40.50.720 3 247 1.2E-98 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 246 6.2E-110 T 11-11-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 4.2E-17 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 4.2E-17 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 4.2E-17 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 245 1.6E-73 T 11-11-2016 Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 7.6E-6 T 11-11-2016 Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.6E-50 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.6E-50 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.6E-50 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.6E-50 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.6E-50 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.6E-50 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS01565 917ccb9f82ba15a7bde4fe324a37feab 247 SUPERFAMILY SSF51735 5 247 9.51E-95 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 Gene3D G3DSA:3.50.50.60 137 328 2.0E-56 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 2 459 5.1E-168 T 11-11-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 SUPERFAMILY SSF51905 3 365 2.46E-62 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 35 45 - T 11-11-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 275 6.8E-37 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 6.8E-37 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 287 309 6.8E-37 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 6.8E-37 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 133 151 6.8E-37 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 341 449 3.7E-36 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 SUPERFAMILY SSF55424 339 459 5.5E-41 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 322 2.4E-74 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 Gene3D G3DSA:3.30.390.30 329 459 3.2E-47 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 Gene3D G3DSA:3.50.50.60 2 136 7.8E-42 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PIRSF PIRSF000350 1 460 1.3E-99 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 260 274 1.2E-72 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 1.2E-72 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 1.2E-72 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 34 49 1.2E-72 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 1.2E-72 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 337 358 1.2E-72 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 302 309 1.2E-72 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 136 145 1.2E-72 T 11-11-2016 Gferi_RS24910 bb9ccfa4f9826d3c7f7bfe99a45da2fb 462 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 1.2E-72 T 11-11-2016 Gferi_RS26895 8cf187488ee43ab4c232211ce60bf8cd 555 SMART SM00849 20 215 7.3E-27 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS26895 8cf187488ee43ab4c232211ce60bf8cd 555 Hamap MF_01491 Ribonuclease J [rnj]. 3 555 48.458 T 11-11-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 Gferi_RS26895 8cf187488ee43ab4c232211ce60bf8cd 555 SUPERFAMILY SSF56281 8 424 4.49E-100 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS26895 8cf187488ee43ab4c232211ce60bf8cd 555 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 358 411 7.4E-11 T 11-11-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Gferi_RS26895 8cf187488ee43ab4c232211ce60bf8cd 555 Gene3D G3DSA:3.60.15.10 4 254 2.3E-82 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS26895 8cf187488ee43ab4c232211ce60bf8cd 555 Pfam PF00753 Metallo-beta-lactamase superfamily 20 164 6.3E-14 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS26895 8cf187488ee43ab4c232211ce60bf8cd 555 PIRSF PIRSF004803 1 555 1.3E-249 T 11-11-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 Gferi_RS26895 8cf187488ee43ab4c232211ce60bf8cd 555 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 8 553 1.2E-205 T 11-11-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 Gferi_RS11130 793d813b342d74eadf343f23891bd9ac 295 SUPERFAMILY SSF53335 5 291 3.35E-55 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS11130 793d813b342d74eadf343f23891bd9ac 295 Gene3D G3DSA:3.40.50.150 90 292 4.4E-65 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS11130 793d813b342d74eadf343f23891bd9ac 295 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 27 290 4.3E-85 T 11-11-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Gferi_RS11130 793d813b342d74eadf343f23891bd9ac 295 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 4 292 3.2E-76 T 11-11-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Gferi_RS11130 793d813b342d74eadf343f23891bd9ac 295 Gene3D G3DSA:1.10.8.10 4 88 5.2E-25 T 11-11-2016 Gferi_RS11130 793d813b342d74eadf343f23891bd9ac 295 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 5 294 40.957 T 11-11-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Gferi_RS11130 793d813b342d74eadf343f23891bd9ac 295 Pfam PF13847 Methyltransferase domain 122 269 8.2E-14 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS11130 793d813b342d74eadf343f23891bd9ac 295 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 197 203 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 Gene3D G3DSA:3.20.20.100 1 264 3.4E-39 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 Gene3D G3DSA:3.30.70.20 301 359 2.0E-10 T 11-11-2016 Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 Pfam PF00248 Aldo/keto reductase family 5 278 1.6E-49 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 Pfam PF13534 4Fe-4S dicluster domain 290 358 1.5E-11 T 11-11-2016 Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 SUPERFAMILY SSF51430 2 262 1.31E-47 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 344 355 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 Gene3D G3DSA:1.10.1060.10 265 300 1.1E-4 T 11-11-2016 Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 SUPERFAMILY SSF46548 280 361 7.85E-13 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS08095 112bf2ab17ebf4df011f41b77aa6ad05 379 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 290 301 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS23570 efd51d044f5128b149e7d9b3c3553800 59 Pfam PF16468 Domain of unknown function (DUF5049) 1 55 1.7E-26 T 11-11-2016 IPR032488 Protein of unknown function DUF5049 Gferi_RS00340 abda12fbed3e29300166d5fd5cabd42a 347 SMART SM00382 167 316 0.0011 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00340 abda12fbed3e29300166d5fd5cabd42a 347 Gene3D G3DSA:3.40.50.300 170 294 2.3E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00340 abda12fbed3e29300166d5fd5cabd42a 347 TIGRFAM TIGR02858 spore_III_AA: stage III sporulation protein AA 46 326 1.9E-113 T 11-11-2016 IPR014217 Sporulation stage III, protein AA Gferi_RS00340 abda12fbed3e29300166d5fd5cabd42a 347 SUPERFAMILY SSF52540 83 295 1.15E-11 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02275 03029ebf5bc2d0061111851ee77b04ed 329 SUPERFAMILY SSF54791 12 73 7.44E-5 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 Gferi_RS02275 03029ebf5bc2d0061111851ee77b04ed 329 Pfam PF02562 PhoH-like protein 107 311 1.4E-97 T 11-11-2016 IPR003714 PhoH-like protein GO:0005524 Gferi_RS02275 03029ebf5bc2d0061111851ee77b04ed 329 SUPERFAMILY SSF52540 107 287 1.25E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02275 03029ebf5bc2d0061111851ee77b04ed 329 SUPERFAMILY SSF52540 55 80 1.25E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02275 03029ebf5bc2d0061111851ee77b04ed 329 Gene3D G3DSA:3.40.50.300 106 310 1.1E-92 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 444 1.8E-16 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 135 9.0E-46 T 11-11-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 253 1.1E-17 T 11-11-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 1.8E-14 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 1.8E-14 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 1.8E-14 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Gene3D G3DSA:3.40.120.10 175 249 3.7E-26 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 SUPERFAMILY SSF53738 257 364 3.26E-31 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 446 45.405 T 11-11-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 369 1.9E-33 T 11-11-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 SUPERFAMILY SSF55957 359 447 1.83E-22 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 SUPERFAMILY SSF53738 157 256 1.02E-28 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 SUPERFAMILY SSF53738 3 180 2.43E-51 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Gene3D G3DSA:3.40.120.10 250 368 2.2E-37 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Gene3D G3DSA:3.30.310.50 369 446 9.6E-19 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 Gene3D G3DSA:3.40.120.10 3 135 2.5E-48 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 94 103 - T 11-11-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS18885 0254c984bab07eb63578a4150d2378ed 448 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 444 4.7E-178 T 11-11-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS24510 de4e7d3f8efefc02efe9f08267cfa5ad 154 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 7 131 1.0E-48 T 11-11-2016 IPR000037 SsrA-binding protein GO:0003723 Gferi_RS24510 de4e7d3f8efefc02efe9f08267cfa5ad 154 Hamap MF_00023 SsrA-binding protein [smpB]. 1 154 73.841 T 11-11-2016 IPR000037 SsrA-binding protein GO:0003723 Gferi_RS24510 de4e7d3f8efefc02efe9f08267cfa5ad 154 TIGRFAM TIGR00086 smpB: SsrA-binding protein 7 148 2.0E-60 T 11-11-2016 IPR000037 SsrA-binding protein GO:0003723 Gferi_RS24510 de4e7d3f8efefc02efe9f08267cfa5ad 154 Pfam PF01668 SmpB protein 6 70 4.1E-33 T 11-11-2016 IPR000037 SsrA-binding protein GO:0003723 Gferi_RS24510 de4e7d3f8efefc02efe9f08267cfa5ad 154 SUPERFAMILY SSF74982 3 131 1.7E-52 T 11-11-2016 IPR023620 Small protein B Gferi_RS24510 de4e7d3f8efefc02efe9f08267cfa5ad 154 ProSitePatterns PS01317 SsrA-binding protein. 25 37 - T 11-11-2016 IPR020081 SsrA-binding protein, conserved site Gferi_RS24510 de4e7d3f8efefc02efe9f08267cfa5ad 154 Gene3D G3DSA:2.40.280.10 5 126 4.9E-55 T 11-11-2016 IPR023620 Small protein B Gferi_RS13735 b436b0c4cf090e0f961f1c9fe7542e54 327 SMART SM00382 184 310 7.6E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13735 b436b0c4cf090e0f961f1c9fe7542e54 327 Pfam PF01695 IstB-like ATP binding protein 183 304 2.0E-14 T 11-11-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 Gferi_RS13735 b436b0c4cf090e0f961f1c9fe7542e54 327 Gene3D G3DSA:3.40.50.300 120 317 4.6E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13735 b436b0c4cf090e0f961f1c9fe7542e54 327 SUPERFAMILY SSF52540 168 315 9.16E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 TIGRFAM TIGR00400 mgtE: magnesium transporter 4 444 4.7E-158 T 11-11-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 Gene3D G3DSA:1.10.357.20 269 443 5.3E-58 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 Gene3D G3DSA:1.25.60.10 3 118 1.2E-27 T 11-11-2016 Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 Pfam PF03448 MgtE intracellular N domain 25 125 5.7E-30 T 11-11-2016 IPR006668 Magnesium transporter, MgtE intracellular domain Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 SMART SM00924 24 127 4.6E-35 T 11-11-2016 IPR006668 Magnesium transporter, MgtE intracellular domain Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 SUPERFAMILY SSF54631 127 265 2.4E-32 T 11-11-2016 Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 Pfam PF00571 CBS domain 127 183 2.2E-5 T 11-11-2016 IPR000644 CBS domain Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 Pfam PF00571 CBS domain 191 245 3.3E-9 T 11-11-2016 IPR000644 CBS domain Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 Pfam PF01769 Divalent cation transporter 313 436 9.0E-30 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 Gene3D G3DSA:3.10.580.10 119 255 3.1E-26 T 11-11-2016 Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 SUPERFAMILY SSF161093 270 442 2.48E-51 T 11-11-2016 Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 SMART SM00116 134 187 100.0 T 11-11-2016 IPR000644 CBS domain Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 SMART SM00116 198 246 4.4E-7 T 11-11-2016 IPR000644 CBS domain Gferi_RS20400 b024afc4942670384becccd018dbe8f2 444 SUPERFAMILY SSF158791 2 124 7.19E-30 T 11-11-2016 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 SUPERFAMILY SSF68912 13 50 9.02E-7 T 11-11-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 SUPERFAMILY SSF52540 136 414 3.83E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 Pfam PF07498 Rho termination factor, N-terminal domain 15 50 4.6E-11 T 11-11-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 SMART SM00959 15 54 1.4E-9 T 11-11-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 Pfam PF07497 Rho termination factor, RNA-binding domain 99 171 5.5E-28 T 11-11-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 462 197.86 T 11-11-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 SUPERFAMILY SSF50249 92 158 2.14E-6 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 202 406 5.7E-20 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 SMART SM00357 100 164 8.1E-9 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 SMART SM00382 213 398 4.3E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 Gene3D G3DSA:3.40.50.300 176 461 3.8E-100 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 TIGRFAM TIGR00767 rho: transcription termination factor Rho 15 460 2.8E-188 T 11-11-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 Gene3D G3DSA:2.40.50.140 94 171 2.5E-39 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS11175 4b767eb412a20eb48e80c15a4e616638 466 Gene3D G3DSA:2.40.50.140 15 55 2.5E-39 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS26490 2ba15792c9db088afd031a9b2eebecab 565 Gene3D G3DSA:3.40.50.300 20 55 1.9E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26490 2ba15792c9db088afd031a9b2eebecab 565 SUPERFAMILY SSF52540 21 176 1.53E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26490 2ba15792c9db088afd031a9b2eebecab 565 SUPERFAMILY SSF52540 253 284 1.53E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26490 2ba15792c9db088afd031a9b2eebecab 565 SUPERFAMILY SSF52540 423 536 1.53E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 333 171.105 T 11-11-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 255 328 2.1E-35 T 11-11-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 SUPERFAMILY SSF52540 22 252 5.51E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 SUPERFAMILY SSF46785 258 330 3.33E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 237 2.0E-118 T 11-11-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 Gene3D G3DSA:1.10.8.60 185 257 7.7E-33 T 11-11-2016 Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 332 1.0E-28 T 11-11-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 328 1.7E-147 T 11-11-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 SMART SM00382 53 184 2.9E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 Gene3D G3DSA:3.40.50.300 22 180 2.1E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26605 4f84fb105ce2ebc2871313e2421301ee 333 Gene3D G3DSA:1.10.10.10 259 329 1.1E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04520 1ab7a48fead8e1c173ec3920d480cc2b 65 SUPERFAMILY SSF51569 4 57 1.88E-15 T 11-11-2016 Gferi_RS04520 1ab7a48fead8e1c173ec3920d480cc2b 65 Gene3D G3DSA:3.20.20.70 4 58 1.4E-18 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS26135 4c82c969568f5032ae58ceebc58e48ea 203 Pfam PF01121 Dephospho-CoA kinase 3 182 5.3E-58 T 11-11-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 Gferi_RS26135 4c82c969568f5032ae58ceebc58e48ea 203 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 199 27.346 T 11-11-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 Gferi_RS26135 4c82c969568f5032ae58ceebc58e48ea 203 SUPERFAMILY SSF52540 1 194 4.88E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26135 4c82c969568f5032ae58ceebc58e48ea 203 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 191 3.6E-62 T 11-11-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 Gferi_RS26135 4c82c969568f5032ae58ceebc58e48ea 203 Gene3D G3DSA:3.40.50.300 1 196 2.1E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26075 29951d1547fdeb866ff8e0441b06d7c1 89 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 11 83 2.0E-19 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS26075 29951d1547fdeb866ff8e0441b06d7c1 89 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 83 5.2E-35 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS26075 29951d1547fdeb866ff8e0441b06d7c1 89 Gene3D G3DSA:2.40.50.220 1 88 3.2E-37 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS26075 29951d1547fdeb866ff8e0441b06d7c1 89 SUPERFAMILY SSF159133 1 88 8.11E-33 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS09125 d7b1aa6af61cf370e995791a105e7256 341 TIGRFAM TIGR04070 photo_TT_lyase: spore photoproduct lyase 5 341 1.3E-148 T 11-11-2016 IPR023897 Spore photoproduct lyase GO:0003913 Gferi_RS09125 d7b1aa6af61cf370e995791a105e7256 341 SUPERFAMILY SSF102114 83 284 3.27E-8 T 11-11-2016 Gferi_RS09125 d7b1aa6af61cf370e995791a105e7256 341 Gene3D G3DSA:3.20.20.70 71 279 5.2E-6 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS11325 76bfa7d2aea2f3ff3abc0a12292651ae 381 SUPERFAMILY SSF53756 9 363 2.67E-29 T 11-11-2016 Gferi_RS11325 76bfa7d2aea2f3ff3abc0a12292651ae 381 Pfam PF00534 Glycosyl transferases group 1 197 359 2.2E-18 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS11325 76bfa7d2aea2f3ff3abc0a12292651ae 381 Gene3D G3DSA:3.40.50.2000 198 357 4.2E-8 T 11-11-2016 Gferi_RS14850 55383444728da31921f17c1555539a52 479 SUPERFAMILY SSF51445 102 345 3.51E-22 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS14850 55383444728da31921f17c1555539a52 479 SUPERFAMILY SSF51445 419 450 3.51E-22 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS14850 55383444728da31921f17c1555539a52 479 Pfam PF00704 Glycosyl hydrolases family 18 108 446 4.1E-20 T 11-11-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 Gferi_RS14850 55383444728da31921f17c1555539a52 479 SUPERFAMILY SSF63446 27 83 4.19E-9 T 11-11-2016 IPR016134 Dockerin domain GO:0000272 Gferi_RS14850 55383444728da31921f17c1555539a52 479 ProSitePatterns PS00018 EF-hand calcium-binding domain. 31 43 - T 11-11-2016 IPR018247 EF-Hand 1, calcium-binding site Gferi_RS14850 55383444728da31921f17c1555539a52 479 Gene3D G3DSA:1.10.1330.10 26 83 4.4E-8 T 11-11-2016 IPR016134 Dockerin domain GO:0000272 Gferi_RS14850 55383444728da31921f17c1555539a52 479 SMART SM00636 105 448 5.1E-4 T 11-11-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 Gferi_RS14850 55383444728da31921f17c1555539a52 479 Gene3D G3DSA:3.20.20.80 100 446 2.2E-23 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS17065 ee460249d14fad01a6c72ef98afb9ca3 427 SUPERFAMILY SSF54862 285 350 5.09E-18 T 11-11-2016 Gferi_RS17065 ee460249d14fad01a6c72ef98afb9ca3 427 Gene3D G3DSA:3.30.70.20 286 361 1.7E-16 T 11-11-2016 Gferi_RS17065 ee460249d14fad01a6c72ef98afb9ca3 427 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 292 303 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS17065 ee460249d14fad01a6c72ef98afb9ca3 427 SUPERFAMILY SSF54862 198 387 1.14E-16 T 11-11-2016 Gferi_RS17065 ee460249d14fad01a6c72ef98afb9ca3 427 Pfam PF12838 4Fe-4S dicluster domain 291 344 3.9E-10 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS17065 ee460249d14fad01a6c72ef98afb9ca3 427 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 330 341 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26460 e6d797a8b5104250297e288f2991fc89 229 Pfam PF00072 Response regulator receiver domain 5 114 1.0E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS26460 e6d797a8b5104250297e288f2991fc89 229 SUPERFAMILY SSF52172 2 125 3.7E-42 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS26460 e6d797a8b5104250297e288f2991fc89 229 Gene3D G3DSA:3.40.50.2300 2 124 1.0E-42 T 11-11-2016 Gferi_RS26460 e6d797a8b5104250297e288f2991fc89 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 226 3.3E-28 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS26460 e6d797a8b5104250297e288f2991fc89 229 SUPERFAMILY SSF46894 128 227 1.4E-32 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS26460 e6d797a8b5104250297e288f2991fc89 229 SMART SM00862 150 226 1.9E-28 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS26460 e6d797a8b5104250297e288f2991fc89 229 Gene3D G3DSA:1.10.10.10 129 228 4.0E-36 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26460 e6d797a8b5104250297e288f2991fc89 229 SMART SM00448 3 113 1.1E-46 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07660 1fe6653817e03d2e0f813de7f6aa0f54 581 PIRSF PIRSF001294 1 580 5.5E-242 T 11-11-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Gferi_RS07660 1fe6653817e03d2e0f813de7f6aa0f54 581 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 6 577 3.9E-227 T 11-11-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Gferi_RS07660 1fe6653817e03d2e0f813de7f6aa0f54 581 Pfam PF03814 Potassium-transporting ATPase A subunit 10 576 6.7E-244 T 11-11-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Gferi_RS07660 1fe6653817e03d2e0f813de7f6aa0f54 581 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 578 35.583 T 11-11-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 Gferi_RS16215 0c2038a1b9837dd382eb6ce3da0478c1 211 Pfam PF00156 Phosphoribosyl transferase domain 47 161 7.1E-17 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS16215 0c2038a1b9837dd382eb6ce3da0478c1 211 Gene3D G3DSA:3.40.50.2020 4 205 5.0E-56 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS16215 0c2038a1b9837dd382eb6ce3da0478c1 211 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 178 2.2E-44 T 11-11-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS16215 0c2038a1b9837dd382eb6ce3da0478c1 211 SUPERFAMILY SSF53271 26 206 2.75E-48 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS16215 0c2038a1b9837dd382eb6ce3da0478c1 211 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 211 28.468 T 11-11-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 34 50 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 257 274 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 361 377 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 196 213 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 111 126 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 57 74 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 140 155 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 292 307 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 77 95 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 PRINTS PR01758 Capsule biosynthesis protein CapB signature 162 179 6.0E-72 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 Pfam PF08245 Mur ligase middle domain 35 238 2.4E-12 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 Gene3D G3DSA:3.40.1190.10 33 171 8.8E-13 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 SUPERFAMILY SSF53623 33 75 6.98E-17 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 SUPERFAMILY SSF53623 104 235 6.98E-17 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS21720 4cc7058d6f2c66d9d4e76473fb8c6037 398 TIGRFAM TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB 5 382 1.1E-161 T 11-11-2016 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 SMART SM00155 198 225 1.3E-5 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 SMART SM00155 374 401 0.069 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 Gene3D G3DSA:3.30.870.10 96 291 1.4E-45 T 11-11-2016 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 SUPERFAMILY SSF56024 81 272 2.47E-47 T 11-11-2016 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 SUPERFAMILY SSF56024 280 437 4.49E-37 T 11-11-2016 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 Pfam PF13091 PLD-like domain 303 424 2.1E-24 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 Pfam PF13091 PLD-like domain 115 258 2.2E-15 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 4 438 1.4E-107 T 11-11-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 Gferi_RS02505 4fbd75849a78994d9978967955861829 459 Gene3D G3DSA:3.30.870.10 292 436 1.2E-31 T 11-11-2016 Gferi_RS20900 a07c1e9d9179d5aa3cf8dd50df72af89 288 SUPERFAMILY SSF52540 1 153 2.01E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20900 a07c1e9d9179d5aa3cf8dd50df72af89 288 Gene3D G3DSA:3.40.50.300 1 156 5.2E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20900 a07c1e9d9179d5aa3cf8dd50df72af89 288 PIRSF PIRSF005052 1 287 5.4E-108 T 11-11-2016 IPR005337 RapZ-like family GO:0005524 Gferi_RS20900 a07c1e9d9179d5aa3cf8dd50df72af89 288 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 284 41.456 T 11-11-2016 IPR005337 RapZ-like family GO:0005524 Gferi_RS20900 a07c1e9d9179d5aa3cf8dd50df72af89 288 Pfam PF03668 P-loop ATPase protein family 1 281 6.2E-106 T 11-11-2016 IPR005337 RapZ-like family GO:0005524 Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 Pfam PF01476 LysM domain 29 73 5.0E-15 T 11-11-2016 IPR018392 LysM domain Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 Gene3D G3DSA:3.40.33.10 85 210 1.0E-17 T 11-11-2016 IPR014044 CAP domain Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 Pfam PF00188 Cysteine-rich secretory protein family 95 210 5.4E-23 T 11-11-2016 IPR014044 CAP domain Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 TIGRFAM TIGR02909 spore_YkwD: uncharacterized protein, YkwD family 88 212 1.1E-60 T 11-11-2016 IPR014258 CAP domain, YkwD-like Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 SMART SM00257 28 73 5.5E-15 T 11-11-2016 IPR018392 LysM domain Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 SUPERFAMILY SSF54106 28 73 4.71E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 Gene3D G3DSA:3.10.350.10 28 74 2.0E-16 T 11-11-2016 IPR018392 LysM domain Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 TIGRFAM TIGR02899 spore_safA: spore coat assembly protein SafA 31 74 1.6E-21 T 11-11-2016 IPR014248 Spore coat assembly protein SafA Gferi_RS08865 ad57c4eae766928a21b9fc0141626d97 213 SUPERFAMILY SSF55797 87 211 1.1E-29 T 11-11-2016 IPR014044 CAP domain Gferi_RS08090 22341e421a590f02c704092bbed05149 128 SMART SM00422 1 70 2.6E-22 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS08090 22341e421a590f02c704092bbed05149 128 Gene3D G3DSA:1.10.1660.10 1 119 8.2E-35 T 11-11-2016 Gferi_RS08090 22341e421a590f02c704092bbed05149 128 SUPERFAMILY SSF46955 1 115 7.69E-33 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS08090 22341e421a590f02c704092bbed05149 128 Pfam PF13411 MerR HTH family regulatory protein 1 67 3.8E-18 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS08090 22341e421a590f02c704092bbed05149 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.8E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS08090 22341e421a590f02c704092bbed05149 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.8E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS08090 22341e421a590f02c704092bbed05149 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 4.8E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SUPERFAMILY SSF47384 425 509 2.94E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SUPERFAMILY SSF55785 284 410 1.26E-23 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Gene3D G3DSA:3.30.450.20 285 410 1.4E-24 T 11-11-2016 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Gene3D G3DSA:3.30.450.20 170 284 3.1E-16 T 11-11-2016 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SMART SM00091 299 365 4.4E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SMART SM00091 170 242 4.3 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SMART SM00091 44 110 0.032 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Gene3D G3DSA:3.30.450.20 47 169 8.8E-22 T 11-11-2016 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Pfam PF13426 PAS domain 189 285 9.3E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Pfam PF13426 PAS domain 309 411 2.3E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SUPERFAMILY SSF55785 50 160 4.51E-21 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SUPERFAMILY SSF55785 155 285 2.09E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 647 2.2E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 594 608 2.2E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 653 666 2.2E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 612 622 2.2E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SMART SM00086 116 158 2.5E-4 T 11-11-2016 IPR001610 PAC motif Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SMART SM00086 372 412 5.3E-4 T 11-11-2016 IPR001610 PAC motif Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SMART SM00086 247 287 92.0 T 11-11-2016 IPR001610 PAC motif Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Pfam PF00512 His Kinase A (phospho-acceptor) domain 439 508 2.3E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Gene3D G3DSA:1.10.287.130 433 494 9.0E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Gene3D G3DSA:3.30.565.10 495 672 1.2E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SMART SM00387 555 669 1.8E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 556 668 6.6E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 43 165 2.4E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 168 294 1.9E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 295 415 1.7E-21 T 11-11-2016 IPR000014 PAS domain Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 Pfam PF08447 PAS fold 67 150 4.3E-15 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SMART SM00388 438 509 5.8E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15585 b490f6310723bdf4e5370c7ab1909a72 699 SUPERFAMILY SSF55874 498 672 6.02E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS23205 4004c35ee662276e968693e089b11d08 165 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 5 157 1.6E-39 T 11-11-2016 IPR017516 AbrB duplication Gferi_RS23205 4004c35ee662276e968693e089b11d08 165 Pfam PF05145 Putative ammonia monooxygenase 5 157 3.2E-35 T 11-11-2016 IPR007820 AbrB family GO:0010468|GO:0016021 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 Pfam PF00154 recA bacterial DNA recombination protein 6 268 1.7E-146 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 PRINTS PR00142 RecA protein signature 165 194 2.2E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 PRINTS PR00142 RecA protein signature 243 272 2.2E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 PRINTS PR00142 RecA protein signature 127 156 2.2E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 PRINTS PR00142 RecA protein signature 210 238 2.2E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 PRINTS PR00142 RecA protein signature 93 122 2.2E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 PRINTS PR00142 RecA protein signature 297 314 2.2E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 3 324 4.9E-176 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 SMART SM00382 57 228 1.0E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 Gene3D G3DSA:3.30.250.10 268 324 1.8E-26 T 11-11-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 SUPERFAMILY SSF52540 3 267 9.36E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 ProSitePatterns PS00321 recA signature. 213 221 - T 11-11-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 SUPERFAMILY SSF54752 268 324 5.89E-20 T 11-11-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 Hamap MF_00268 Protein RecA [recA]. 4 329 52.852 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Gferi_RS00630 ca1cc2ea69963affcf0aa08e130bfad1 344 Gene3D G3DSA:3.40.50.300 32 267 1.7E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25695 15bc0f9ac7a11a199b4f238e3609bb18 255 Gene3D G3DSA:1.10.10.10 5 50 6.2E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25695 15bc0f9ac7a11a199b4f238e3609bb18 255 SUPERFAMILY SSF48008 101 230 5.75E-24 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS25695 15bc0f9ac7a11a199b4f238e3609bb18 255 Pfam PF08461 Ribonuclease R winged-helix domain 11 75 2.0E-8 T 11-11-2016 IPR013668 Ribonuclease R winged-helix domain Gferi_RS25695 15bc0f9ac7a11a199b4f238e3609bb18 255 SMART SM00895 105 227 6.5E-20 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS25695 15bc0f9ac7a11a199b4f238e3609bb18 255 Pfam PF07729 FCD domain 107 226 7.5E-23 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS25695 15bc0f9ac7a11a199b4f238e3609bb18 255 SUPERFAMILY SSF46785 5 78 2.84E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25695 15bc0f9ac7a11a199b4f238e3609bb18 255 Gene3D G3DSA:1.20.120.530 101 234 3.4E-25 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS25695 15bc0f9ac7a11a199b4f238e3609bb18 255 Gene3D G3DSA:1.10.10.10 51 95 7.5E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02320 d215d23b2abb892ceb2f36d90fe85fb3 114 PRINTS PR00332 Histidine triad family signature 26 44 5.4E-20 T 11-11-2016 IPR001310 Histidine triad (HIT) protein Gferi_RS02320 d215d23b2abb892ceb2f36d90fe85fb3 114 PRINTS PR00332 Histidine triad family signature 5 21 5.4E-20 T 11-11-2016 IPR001310 Histidine triad (HIT) protein Gferi_RS02320 d215d23b2abb892ceb2f36d90fe85fb3 114 PRINTS PR00332 Histidine triad family signature 94 104 5.4E-20 T 11-11-2016 IPR001310 Histidine triad (HIT) protein Gferi_RS02320 d215d23b2abb892ceb2f36d90fe85fb3 114 Pfam PF01230 HIT domain 12 108 4.3E-27 T 11-11-2016 IPR001310 Histidine triad (HIT) protein Gferi_RS02320 d215d23b2abb892ceb2f36d90fe85fb3 114 SUPERFAMILY SSF54197 2 113 1.01E-38 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 Gferi_RS02320 d215d23b2abb892ceb2f36d90fe85fb3 114 ProSitePatterns PS00892 HIT domain signature. 87 105 - T 11-11-2016 IPR019808 Histidine triad, conserved site Gferi_RS02320 d215d23b2abb892ceb2f36d90fe85fb3 114 Gene3D G3DSA:3.30.428.10 2 114 2.5E-42 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 183 196 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 SUPERFAMILY SSF52540 159 388 1.54E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 Pfam PF00158 Sigma-54 interaction domain 159 326 1.1E-66 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 246 261 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 Gene3D G3DSA:1.10.10.60 421 469 5.7E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 Pfam PF00989 PAS fold 20 112 6.5E-9 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 Gene3D G3DSA:3.30.450.20 7 118 1.1E-12 T 11-11-2016 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 SMART SM00382 179 324 4.5E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 17 78 4.0E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 SUPERFAMILY SSF55785 15 119 2.27E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 Gene3D G3DSA:1.10.8.60 333 390 7.6E-18 T 11-11-2016 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 372 381 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 Gene3D G3DSA:3.40.50.300 156 332 1.0E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 SMART SM00091 19 85 7.0E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 Pfam PF02954 Bacterial regulatory protein, Fis family 431 469 6.4E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS09560 d77ddecae39b2222a4eb9280a4a2431a 472 SUPERFAMILY SSF46689 372 469 6.81E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 SMART SM00342 244 327 3.2E-26 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 281 323 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 Gene3D G3DSA:1.10.10.60 281 328 2.5E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 296 311 9.4E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 311 327 9.4E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 Gene3D G3DSA:1.10.10.60 230 280 2.6E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 SUPERFAMILY SSF46689 230 278 2.87E-5 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 Pfam PF12833 Helix-turn-helix domain 250 328 5.3E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22240 c280dc75b2079a7ce11c7b62c16aaf62 330 SUPERFAMILY SSF46689 281 329 2.78E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 Pfam PF00702 haloacid dehalogenase-like hydrolase 434 511 5.1E-11 T 11-11-2016 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 SUPERFAMILY SSF81653 222 318 4.45E-20 T 11-11-2016 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 SUPERFAMILY SSF56784 409 599 5.58E-29 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 425 574 2.6E-24 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 192 421 1.8E-24 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 Gene3D G3DSA:3.40.50.1000 386 567 8.5E-29 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 SUPERFAMILY SSF81665 319 404 5.49E-7 T 11-11-2016 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 SUPERFAMILY SSF81665 170 222 5.49E-7 T 11-11-2016 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 SUPERFAMILY SSF81665 548 602 5.49E-7 T 11-11-2016 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 Gene3D G3DSA:2.70.150.10 213 318 3.3E-20 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 Pfam PF00122 E1-E2 ATPase 190 401 1.3E-38 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS18775 561d87416c941c56b03cd3f605e62d98 614 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 412 418 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS03020 b87f77e7930fe2c15694acfd333cd941 254 Pfam PF02361 Cobalt transport protein 6 218 1.3E-34 T 11-11-2016 IPR003339 ABC/ECF transporter, transmembrane component Gferi_RS03020 b87f77e7930fe2c15694acfd333cd941 254 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 11 213 3.9E-42 T 11-11-2016 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 SUPERFAMILY SSF82693 43 134 8.11E-17 T 11-11-2016 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 Gene3D G3DSA:1.10.3850.10 798 1009 3.3E-47 T 11-11-2016 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 Gene3D G3DSA:1.20.1640.10 294 500 8.8E-44 T 11-11-2016 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 SUPERFAMILY SSF82714 710 790 4.58E-7 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 9.9E-25 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 9.9E-25 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 9.9E-25 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 9.9E-25 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 9.9E-25 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 Gene3D G3DSA:3.30.2090.10 708 790 3.5E-6 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 Gene3D G3DSA:3.30.2090.10 187 268 1.8E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 Gene3D G3DSA:3.30.70.1430 44 138 1.3E-18 T 11-11-2016 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 SUPERFAMILY SSF82866 295 493 5.23E-36 T 11-11-2016 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 SUPERFAMILY SSF82866 793 1015 4.71E-44 T 11-11-2016 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 Pfam PF00873 AcrB/AcrD/AcrF family 6 1007 8.2E-159 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 SUPERFAMILY SSF82714 186 268 1.27E-10 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 SUPERFAMILY SSF82693 143 184 3.14E-10 T 11-11-2016 Gferi_RS07240 8e0b50c9c50991a8f2c5b537c8dee7a5 1043 SUPERFAMILY SSF82693 272 325 3.14E-10 T 11-11-2016 Gferi_RS14810 de8ee045ad66ee0e97900f6ee1eca685 383 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 4 374 8.9E-78 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS14810 de8ee045ad66ee0e97900f6ee1eca685 383 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 211 374 2.1E-30 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS24210 5027a121208b7d8e1fa6f0b8a814fe57 469 SUPERFAMILY SSF52317 246 459 3.12E-34 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS24210 5027a121208b7d8e1fa6f0b8a814fe57 469 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 251 445 5.7E-41 T 11-11-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Gferi_RS24210 5027a121208b7d8e1fa6f0b8a814fe57 469 Gene3D G3DSA:3.40.50.300 4 194 6.6E-25 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24210 5027a121208b7d8e1fa6f0b8a814fe57 469 Gene3D G3DSA:3.40.50.880 249 458 3.1E-28 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS24210 5027a121208b7d8e1fa6f0b8a814fe57 469 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 5 455 4.5E-162 T 11-11-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Gferi_RS24210 5027a121208b7d8e1fa6f0b8a814fe57 469 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 193 2.1E-26 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Gferi_RS24210 5027a121208b7d8e1fa6f0b8a814fe57 469 SUPERFAMILY SSF52540 1 195 7.06E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24210 5027a121208b7d8e1fa6f0b8a814fe57 469 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 3 446 44.194 T 11-11-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 Gferi_RS01045 68257373299826aa0283942263ba6ed5 849 SUPERFAMILY SSF52540 212 573 3.57E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01045 68257373299826aa0283942263ba6ed5 849 Gene3D G3DSA:3.40.50.300 213 395 2.0E-22 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01045 68257373299826aa0283942263ba6ed5 849 Pfam PF13361 UvrD-like helicase C-terminal domain 390 492 4.9E-7 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Gferi_RS01045 68257373299826aa0283942263ba6ed5 849 Pfam PF13361 UvrD-like helicase C-terminal domain 495 571 2.7E-12 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Gferi_RS01045 68257373299826aa0283942263ba6ed5 849 Gene3D G3DSA:3.40.50.300 396 572 1.6E-28 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01045 68257373299826aa0283942263ba6ed5 849 Pfam PF08378 Nuclease-related domain 14 129 1.2E-10 T 11-11-2016 IPR011528 Nuclease-related domain, NERD Gferi_RS10245 136b381bd30271edc2037645180be3f3 284 Gene3D G3DSA:1.50.10.20 89 257 1.1E-16 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS10245 136b381bd30271edc2037645180be3f3 284 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 126 190 1.2E-6 T 11-11-2016 IPR032697 Squalene cyclase, N-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 Gferi_RS10245 136b381bd30271edc2037645180be3f3 284 SUPERFAMILY SSF48239 81 257 1.35E-20 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS25415 0502143de04c24149fcd79b23161b784 274 Pfam PF01063 Amino-transferase class IV 29 244 1.9E-54 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS25415 0502143de04c24149fcd79b23161b784 274 Gene3D G3DSA:3.30.470.10 2 93 6.5E-24 T 11-11-2016 Gferi_RS25415 0502143de04c24149fcd79b23161b784 274 Gene3D G3DSA:3.20.10.10 110 269 1.7E-44 T 11-11-2016 Gferi_RS25415 0502143de04c24149fcd79b23161b784 274 SUPERFAMILY SSF56752 2 269 4.45E-67 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS25415 0502143de04c24149fcd79b23161b784 274 ProSitePatterns PS00770 Aminotransferases class-IV signature. 170 199 - T 11-11-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS06955 58cea1433f8a72c38b2212ea985f2d88 589 Pfam PF02348 Cytidylyltransferase 337 509 2.6E-18 T 11-11-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Gferi_RS06955 58cea1433f8a72c38b2212ea985f2d88 589 Pfam PF03102 NeuB family 49 250 1.4E-14 T 11-11-2016 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 Gferi_RS06955 58cea1433f8a72c38b2212ea985f2d88 589 Gene3D G3DSA:3.20.20.70 2 249 2.9E-26 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS06955 58cea1433f8a72c38b2212ea985f2d88 589 Gene3D G3DSA:3.90.550.10 337 458 4.6E-17 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06955 58cea1433f8a72c38b2212ea985f2d88 589 SUPERFAMILY SSF53448 336 534 5.9E-20 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06955 58cea1433f8a72c38b2212ea985f2d88 589 SUPERFAMILY SSF51569 5 268 2.49E-19 T 11-11-2016 Gferi_RS19445 0a598ad9b1c27661f1d78989b7a43df8 249 Gene3D G3DSA:3.40.630.30 122 237 7.5E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19445 0a598ad9b1c27661f1d78989b7a43df8 249 Pfam PF00583 Acetyltransferase (GNAT) family 161 235 2.5E-11 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS19445 0a598ad9b1c27661f1d78989b7a43df8 249 SUPERFAMILY SSF55729 113 238 6.8E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS12525 4c05e1b96496821d82283089c088c8ee 174 Gene3D G3DSA:3.30.1330.20 19 109 4.2E-34 T 11-11-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 Gferi_RS12525 4c05e1b96496821d82283089c088c8ee 174 Pfam PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon 12 119 1.1E-31 T 11-11-2016 IPR003814 Formylmethanofuran dehydrogenase, subunit E domain Gferi_RS12525 4c05e1b96496821d82283089c088c8ee 174 SUPERFAMILY SSF143555 3 137 3.01E-47 T 11-11-2016 Gferi_RS12525 4c05e1b96496821d82283089c088c8ee 174 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 139 171 3.2E-9 T 11-11-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 7.7E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 7.7E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 SUPERFAMILY SSF46785 9 91 5.17E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 SUPERFAMILY SSF64288 64 241 4.24E-49 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 Gene3D G3DSA:3.40.1410.10 75 241 1.9E-50 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 SMART SM00345 17 76 5.7E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 Pfam PF07702 UTRA domain 98 236 2.0E-39 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 SMART SM00866 97 236 9.5E-36 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 4.6E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19135 1b52626148dcc77727b72cdc3237c112 245 Gene3D G3DSA:1.10.10.10 9 74 7.7E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25240 cf0d6fd49c85b905f6a17874b9fd78ec 502 PIRSF PIRSF033132 1 502 2.4E-269 T 11-11-2016 IPR014999 Uncharacterised protein family UPF0371 Gferi_RS25240 cf0d6fd49c85b905f6a17874b9fd78ec 502 Hamap MF_01567 UPF0371 protein . 1 502 59.337 T 11-11-2016 IPR014999 Uncharacterised protein family UPF0371 Gferi_RS25240 cf0d6fd49c85b905f6a17874b9fd78ec 502 Gene3D G3DSA:3.10.630.10 1 205 1.4E-120 T 11-11-2016 Gferi_RS25240 cf0d6fd49c85b905f6a17874b9fd78ec 502 Gene3D G3DSA:3.10.630.10 251 281 1.4E-120 T 11-11-2016 Gferi_RS25240 cf0d6fd49c85b905f6a17874b9fd78ec 502 Gene3D G3DSA:1.20.1570.10 282 339 1.6E-47 T 11-11-2016 Gferi_RS25240 cf0d6fd49c85b905f6a17874b9fd78ec 502 Gene3D G3DSA:1.20.1570.10 206 244 1.6E-47 T 11-11-2016 Gferi_RS25240 cf0d6fd49c85b905f6a17874b9fd78ec 502 Pfam PF08903 Domain of unknown function (DUF1846) 3 499 2.3E-240 T 11-11-2016 IPR014999 Uncharacterised protein family UPF0371 Gferi_RS13405 03b2daafc0537ae4412d55cfddcce454 333 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 71 328 1.9E-126 T 11-11-2016 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 Gferi_RS13405 03b2daafc0537ae4412d55cfddcce454 333 Gene3D G3DSA:3.20.20.70 72 331 6.3E-105 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS13405 03b2daafc0537ae4412d55cfddcce454 333 Gene3D G3DSA:3.30.70.1140 1 70 3.0E-23 T 11-11-2016 Gferi_RS13405 03b2daafc0537ae4412d55cfddcce454 333 Pfam PF00793 DAHP synthetase I family 88 329 1.9E-80 T 11-11-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Gferi_RS13405 03b2daafc0537ae4412d55cfddcce454 333 SUPERFAMILY SSF51569 1 330 4.12E-121 T 11-11-2016 Gferi_RS06415 44706d0abb12e03304baacb9ae045a98 71 SMART SM00418 1 56 6.1E-7 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06415 44706d0abb12e03304baacb9ae045a98 71 Gene3D G3DSA:1.10.10.10 1 61 2.2E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06415 44706d0abb12e03304baacb9ae045a98 71 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 12 27 1.1E-7 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06415 44706d0abb12e03304baacb9ae045a98 71 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 42 1.1E-7 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06415 44706d0abb12e03304baacb9ae045a98 71 Pfam PF01022 Bacterial regulatory protein, arsR family 1 30 2.9E-9 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06415 44706d0abb12e03304baacb9ae045a98 71 SUPERFAMILY SSF46785 1 63 6.94E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04970 4df78ab792ba80ade0440981ea76e80a 238 Gene3D G3DSA:3.90.190.10 7 173 7.0E-30 T 11-11-2016 IPR029021 Protein-tyrosine phosphatase-like Gferi_RS04970 4df78ab792ba80ade0440981ea76e80a 238 SUPERFAMILY SSF52799 6 224 4.22E-43 T 11-11-2016 IPR029021 Protein-tyrosine phosphatase-like Gferi_RS04970 4df78ab792ba80ade0440981ea76e80a 238 Pfam PF13350 Tyrosine phosphatase family 6 227 5.1E-52 T 11-11-2016 IPR026893 Tyrosine/serine-protein phosphatase IphP-type Gferi_RS04795 7630a3a97cc2f5711dd211babd4f6b33 239 PIRSF PIRSF000883 1 238 3.2E-57 T 11-11-2016 IPR011152 Phosphoesterase MJ0912 Gferi_RS04795 7630a3a97cc2f5711dd211babd4f6b33 239 SUPERFAMILY SSF56300 1 233 1.75E-48 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS04795 7630a3a97cc2f5711dd211babd4f6b33 239 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 201 4.5E-26 T 11-11-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Gferi_RS04795 7630a3a97cc2f5711dd211babd4f6b33 239 Gene3D G3DSA:3.60.21.10 1 238 8.4E-57 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS04795 7630a3a97cc2f5711dd211babd4f6b33 239 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 198 6.4E-30 T 11-11-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 Hamap MF_00335 Ribonuclease Y [rny]. 5 513 25.896 T 11-11-2016 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 SUPERFAMILY SSF109604 309 460 7.4E-31 T 11-11-2016 Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 7 513 6.3E-246 T 11-11-2016 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 Pfam PF01966 HD domain 330 421 3.3E-18 T 11-11-2016 IPR006674 HD domain Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 TIGRFAM TIGR00277 HDIG: HDIG domain 325 402 7.3E-23 T 11-11-2016 IPR006675 HDIG domain Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 SUPERFAMILY SSF54791 201 297 6.59E-18 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 Gene3D G3DSA:1.10.3210.10 309 488 4.8E-44 T 11-11-2016 IPR006674 HD domain Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 Pfam PF00013 KH domain 208 263 5.4E-6 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 SMART SM00471 325 431 5.2E-13 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 SMART SM00322 201 268 3.4E-7 T 11-11-2016 IPR004087 K Homology domain GO:0003676 Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 Gene3D G3DSA:3.30.1370.10 213 289 1.4E-7 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 Gferi_RS00620 c17eef9ddc214286f8aef60eeb3edc50 513 Pfam PF12072 Domain of unknown function (DUF3552) 6 198 9.3E-72 T 11-11-2016 IPR022711 Ribonuclease Y, N-terminal Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 Pfam PF00158 Sigma-54 interaction domain 335 502 1.7E-68 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 549 558 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 422 437 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 211 313 7.3E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 Gene3D G3DSA:1.10.8.60 509 581 6.6E-18 T 11-11-2016 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 Pfam PF02954 Bacterial regulatory protein, Fis family 597 638 6.9E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 Pfam PF00989 PAS fold 212 313 1.3E-11 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 SMART SM00091 208 275 1.0E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 Gene3D G3DSA:1.10.10.60 591 641 3.3E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 SUPERFAMILY SSF46689 549 640 4.48E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 359 372 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 SUPERFAMILY SSF52540 335 565 6.86E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 Gene3D G3DSA:3.40.50.300 332 508 4.5E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 SUPERFAMILY SSF55785 198 309 1.92E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 SMART SM00382 355 499 2.5E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 621 641 3.6E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 604 621 3.6E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS14840 91d14bea7e323e30c5b29bb52e017a9a 643 Gene3D G3DSA:3.30.450.20 203 313 5.1E-14 T 11-11-2016 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Gene3D G3DSA:3.90.105.10 111 142 6.8E-16 T 11-11-2016 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Pfam PF12727 PBP superfamily domain 405 595 3.0E-61 T 11-11-2016 IPR024370 PBP domain Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Pfam PF00994 Probable molybdopterin binding domain 161 296 1.3E-19 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Gene3D G3DSA:2.40.340.10 311 381 8.3E-25 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Gene3D G3DSA:3.40.980.10 143 310 7.6E-48 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 SMART SM00852 160 297 8.6E-32 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Pfam PF03454 MoeA C-terminal region (domain IV) 310 380 1.6E-14 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 SUPERFAMILY SSF53850 412 610 1.32E-15 T 11-11-2016 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 SUPERFAMILY SSF63882 14 154 2.22E-36 T 11-11-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Gene3D G3DSA:2.170.190.11 39 110 3.2E-12 T 11-11-2016 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Gene3D G3DSA:3.40.190.10 474 603 1.1E-18 T 11-11-2016 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 SUPERFAMILY SSF63867 307 381 5.1E-16 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 SUPERFAMILY SSF53218 157 301 8.11E-35 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 233 266 - T 11-11-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 Gferi_RS20820 6c6055d999f825474cb420ac5a5203be 621 Pfam PF03453 MoeA N-terminal region (domain I and II) 16 146 1.5E-23 T 11-11-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS19875 8840d3421f417c71698a8234f272bf71 271 Pfam PF01471 Putative peptidoglycan binding domain 39 95 8.6E-16 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS19875 8840d3421f417c71698a8234f272bf71 271 SUPERFAMILY SSF47090 28 97 1.65E-16 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS19875 8840d3421f417c71698a8234f272bf71 271 Gene3D G3DSA:1.10.101.10 30 97 1.3E-19 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS18015 b4484529e606bb19cb003995cd0f28ac 266 Gene3D G3DSA:3.40.50.620 12 168 3.3E-29 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS18015 b4484529e606bb19cb003995cd0f28ac 266 PIRSF PIRSF006661 1 266 1.7E-102 T 11-11-2016 IPR005232 Conserved hypothetical protein CHP00268 Gferi_RS18015 b4484529e606bb19cb003995cd0f28ac 266 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 4 259 6.3E-80 T 11-11-2016 IPR005232 Conserved hypothetical protein CHP00268 Gferi_RS18015 b4484529e606bb19cb003995cd0f28ac 266 Pfam PF02540 NAD synthase 14 74 1.9E-5 T 11-11-2016 IPR022310 NAD/GMP synthase Gferi_RS18015 b4484529e606bb19cb003995cd0f28ac 266 SUPERFAMILY SSF52402 15 218 6.4E-38 T 11-11-2016 Gferi_RS13905 3bb260bd908df562000129d221757d41 411 Gene3D G3DSA:3.30.470.20 103 316 3.1E-32 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS13905 3bb260bd908df562000129d221757d41 411 SMART SM01209 108 284 9.8E-4 T 11-11-2016 Gferi_RS13905 3bb260bd908df562000129d221757d41 411 Pfam PF13535 ATP-grasp domain 144 287 1.3E-21 T 11-11-2016 Gferi_RS13905 3bb260bd908df562000129d221757d41 411 SUPERFAMILY SSF56059 109 320 5.56E-39 T 11-11-2016 Gferi_RS01515 07b76c7008dc26f93e0a5958c70814c1 76 Hamap MF_00088 UPF0109 protein . 1 75 23.535 T 11-11-2016 IPR020627 Uncharacterised protein family UPF0109 Gferi_RS01515 07b76c7008dc26f93e0a5958c70814c1 76 SUPERFAMILY SSF54814 5 61 1.05E-7 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 Gferi_RS01515 07b76c7008dc26f93e0a5958c70814c1 76 Gene3D G3DSA:3.30.300.120 26 72 3.7E-6 T 11-11-2016 Gferi_RS01515 07b76c7008dc26f93e0a5958c70814c1 76 Pfam PF13083 KH domain 3 74 6.8E-23 T 11-11-2016 Gferi_RS16875 ddad58f78ccfc0b65fbd20e17ae1ed36 558 SUPERFAMILY SSF51703 13 552 9.89E-214 T 11-11-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS16875 ddad58f78ccfc0b65fbd20e17ae1ed36 558 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 35 556 1.3E-249 T 11-11-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS16875 ddad58f78ccfc0b65fbd20e17ae1ed36 558 Gene3D G3DSA:3.20.20.240 36 552 1.1E-225 T 11-11-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS16875 ddad58f78ccfc0b65fbd20e17ae1ed36 558 Pfam PF01642 Methylmalonyl-CoA mutase 37 550 5.9E-226 T 11-11-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS07255 92e8f393ea54b2397a34bc738819902a 147 Gene3D G3DSA:3.40.630.30 3 139 5.3E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS07255 92e8f393ea54b2397a34bc738819902a 147 Pfam PF00583 Acetyltransferase (GNAT) family 63 137 3.1E-15 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS07255 92e8f393ea54b2397a34bc738819902a 147 SUPERFAMILY SSF55729 1 141 2.87E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS25485 d28dd7750847f8478aa89482d179bf13 236 SMART SM00448 5 116 1.0E-41 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS25485 d28dd7750847f8478aa89482d179bf13 236 SUPERFAMILY SSF46894 130 230 2.41E-25 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS25485 d28dd7750847f8478aa89482d179bf13 236 Gene3D G3DSA:3.40.50.2300 2 124 1.8E-37 T 11-11-2016 Gferi_RS25485 d28dd7750847f8478aa89482d179bf13 236 SMART SM00862 151 229 3.7E-21 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS25485 d28dd7750847f8478aa89482d179bf13 236 SUPERFAMILY SSF52172 3 129 8.97E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS25485 d28dd7750847f8478aa89482d179bf13 236 Gene3D G3DSA:1.10.10.10 129 231 4.1E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25485 d28dd7750847f8478aa89482d179bf13 236 Pfam PF00072 Response regulator receiver domain 7 117 7.0E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS25485 d28dd7750847f8478aa89482d179bf13 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 229 5.9E-22 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 Pfam PF00571 CBS domain 349 402 4.4E-7 T 11-11-2016 IPR000644 CBS domain Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 Gene3D G3DSA:3.30.70.270 416 578 1.4E-19 T 11-11-2016 Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 SUPERFAMILY SSF141868 21 245 5.62E-54 T 11-11-2016 IPR001633 EAL domain Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 SUPERFAMILY SSF55073 418 573 3.45E-18 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 Pfam PF00563 EAL domain 23 245 4.2E-44 T 11-11-2016 IPR001633 EAL domain Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 Gene3D G3DSA:3.10.580.10 291 402 2.6E-12 T 11-11-2016 Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 SMART SM00267 402 587 2.2E-7 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 SMART SM00052 10 250 6.4E-26 T 11-11-2016 IPR001633 EAL domain Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 Gene3D G3DSA:3.20.20.450 19 246 2.7E-49 T 11-11-2016 IPR001633 EAL domain Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 413 510 8.8E-15 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 Pfam PF00990 Diguanylate cyclase, GGDEF domain 417 517 2.1E-13 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS08705 0cb3df391e4c388c056544851060aeff 595 SUPERFAMILY SSF54631 294 403 1.27E-14 T 11-11-2016 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 Gene3D G3DSA:3.40.1190.10 96 308 2.4E-59 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 Pfam PF08245 Mur ligase middle domain 112 289 1.1E-38 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 Gene3D G3DSA:3.90.190.20 311 446 6.8E-48 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 SUPERFAMILY SSF53244 309 449 4.21E-44 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 310 368 5.2E-7 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 Gene3D G3DSA:3.40.50.720 3 95 4.5E-16 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 6 449 34.537 T 11-11-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 SUPERFAMILY SSF53623 99 307 7.59E-51 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 SUPERFAMILY SSF51984 6 95 5.49E-16 T 11-11-2016 Gferi_RS01960 2f8572d70c79a23cd90be2c8d18d69e5 454 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 7 447 8.8E-134 T 11-11-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS06110 55d163f38fb36cad33da45a5089529c8 476 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 42 470 1.9E-79 T 11-11-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 Gferi_RS06110 55d163f38fb36cad33da45a5089529c8 476 Pfam PF00939 Sodium:sulfate symporter transmembrane region 26 474 1.6E-63 T 11-11-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 Gferi_RS06110 55d163f38fb36cad33da45a5089529c8 476 PIRSF PIRSF002457 17 476 4.2E-108 T 11-11-2016 IPR030676 Citrate carrier CitT-related Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 Gene3D G3DSA:3.30.70.360 190 285 1.5E-19 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 17 379 7.5E-66 T 11-11-2016 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 Pfam PF01546 Peptidase family M20/M25/M40 72 388 8.9E-28 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 SUPERFAMILY SSF55031 181 286 2.75E-15 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 Gene3D G3DSA:3.40.630.10 332 390 3.6E-56 T 11-11-2016 Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 Gene3D G3DSA:3.40.630.10 12 189 3.6E-56 T 11-11-2016 Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 TIGRFAM TIGR03526 selenium_YgeY: putative selenium metabolism hydrolase 3 386 2.2E-111 T 11-11-2016 IPR017706 Peptidase M20/DapE, YgeY Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 Pfam PF07687 Peptidase dimerisation domain 177 284 1.5E-19 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 71 80 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 SUPERFAMILY SSF53187 308 390 3.01E-60 T 11-11-2016 Gferi_RS05155 a130cd5cd42aee7e957b635ae172eaed 390 SUPERFAMILY SSF53187 1 180 3.01E-60 T 11-11-2016 Gferi_RS05830 5693e1a55163e675f6e94b270d9a97b7 141 SMART SM00529 23 121 2.0E-4 T 11-11-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 Gferi_RS05830 5693e1a55163e675f6e94b270d9a97b7 141 Gene3D G3DSA:1.10.60.10 74 137 3.4E-8 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS05830 5693e1a55163e675f6e94b270d9a97b7 141 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 62 122 1.4E-5 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS05830 5693e1a55163e675f6e94b270d9a97b7 141 SUPERFAMILY SSF47979 62 129 5.49E-7 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS05830 5693e1a55163e675f6e94b270d9a97b7 141 Gene3D G3DSA:1.10.10.10 1 70 8.6E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05830 5693e1a55163e675f6e94b270d9a97b7 141 SUPERFAMILY SSF46785 1 59 7.55E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05830 5693e1a55163e675f6e94b270d9a97b7 141 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 2 57 5.9E-8 T 11-11-2016 IPR022687 DTXR-type HTH domain GO:0003677 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 274 3.8E-40 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 284 306 3.8E-40 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 3.8E-40 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 175 193 3.8E-40 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.8E-40 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 SUPERFAMILY SSF55424 334 456 1.48E-40 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 Gene3D G3DSA:3.30.390.30 326 455 1.4E-49 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 SUPERFAMILY SSF51905 3 364 4.92E-58 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 36 51 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 175 200 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 259 273 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 421 441 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 399 414 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 299 306 4.6E-73 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 456 2.1E-163 T 11-11-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 446 1.7E-35 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 Gene3D G3DSA:3.50.50.60 139 325 2.2E-52 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 PIRSF PIRSF000350 2 453 1.2E-101 T 11-11-2016 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 37 47 - T 11-11-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 319 2.5E-71 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS16650 dddd97f72dbc7d48784cab41bdf944a1 457 Gene3D G3DSA:3.50.50.60 3 138 7.9E-38 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 Pfam PF07085 DRTGG domain 75 176 7.2E-28 T 11-11-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 SMART SM00116 197 245 2.5E-8 T 11-11-2016 IPR000644 CBS domain Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 SMART SM00116 256 303 1.6E-5 T 11-11-2016 IPR000644 CBS domain Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 Gene3D G3DSA:1.10.10.10 14 58 1.0E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 Pfam PF03061 Thioesterase superfamily 347 418 5.4E-5 T 11-11-2016 IPR006683 Thioesterase domain Reactome: R-HSA-75105 Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 Gene3D G3DSA:3.10.129.10 326 429 1.6E-11 T 11-11-2016 IPR029069 HotDog domain Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 SUPERFAMILY SSF54631 181 300 8.17E-30 T 11-11-2016 Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 Gene3D G3DSA:3.20.20.70 175 304 1.2E-27 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 Pfam PF00571 CBS domain 250 303 1.3E-5 T 11-11-2016 IPR000644 CBS domain Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 Pfam PF00571 CBS domain 190 244 1.3E-11 T 11-11-2016 IPR000644 CBS domain Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 Gene3D G3DSA:3.40.1390.20 66 174 3.6E-37 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 SUPERFAMILY SSF75138 71 184 7.59E-26 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS20945 ffb2e571d08b6fea4300b28853c67da0 432 SUPERFAMILY SSF54637 319 431 2.38E-12 T 11-11-2016 IPR029069 HotDog domain Gferi_RS03390 8098d3ed020fc0163526e2281d96e5c2 222 Pfam PF07729 FCD domain 85 214 7.0E-13 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS03390 8098d3ed020fc0163526e2281d96e5c2 222 SMART SM00895 85 216 1.2E-4 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS03390 8098d3ed020fc0163526e2281d96e5c2 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 75 2.0E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS03390 8098d3ed020fc0163526e2281d96e5c2 222 SUPERFAMILY SSF48008 81 216 3.14E-19 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS03390 8098d3ed020fc0163526e2281d96e5c2 222 SMART SM00345 17 75 4.0E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS03390 8098d3ed020fc0163526e2281d96e5c2 222 SUPERFAMILY SSF46785 9 84 1.98E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03390 8098d3ed020fc0163526e2281d96e5c2 222 Gene3D G3DSA:1.10.10.10 5 76 3.3E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03390 8098d3ed020fc0163526e2281d96e5c2 222 Gene3D G3DSA:1.20.120.530 78 216 1.6E-21 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 SUPERFAMILY SSF52540 208 379 1.29E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 PIRSF PIRSF006809 7 431 4.7E-147 T 11-11-2016 IPR016496 GTPase HflX GO:0005525 Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 Pfam PF01926 50S ribosome-binding GTPase 210 336 1.3E-19 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 208 372 6.2E-14 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 Pfam PF13167 GTP-binding GTPase N-terminal 34 122 1.2E-33 T 11-11-2016 IPR025121 GTPase HflX, N-terminal Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 Gene3D G3DSA:3.40.50.300 218 376 6.4E-33 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 Hamap MF_00900 GTPase HflX [hflX]. 37 404 47.219 T 11-11-2016 IPR016496 GTPase HflX GO:0005525 Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 Gene3D G3DSA:3.40.50.300 184 217 9.0E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 16 375 2.6E-140 T 11-11-2016 IPR016496 GTPase HflX GO:0005525 Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 Pfam PF16360 GTP-binding GTPase Middle Region 124 202 7.7E-31 T 11-11-2016 IPR032305 GTP-binding protein, middle domain Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 230 1.8E-5 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02740 001c233a1ad15a91174592c6b14ce3f6 432 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 285 303 1.8E-5 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02880 b6a858fcdf273dfdb0e1bb169c2e1e46 235 SMART SM00448 4 114 5.1E-43 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS02880 b6a858fcdf273dfdb0e1bb169c2e1e46 235 Gene3D G3DSA:3.40.50.2300 2 123 8.3E-42 T 11-11-2016 Gferi_RS02880 b6a858fcdf273dfdb0e1bb169c2e1e46 235 SUPERFAMILY SSF46894 132 232 3.4E-30 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS02880 b6a858fcdf273dfdb0e1bb169c2e1e46 235 Pfam PF00072 Response regulator receiver domain 6 115 1.3E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS02880 b6a858fcdf273dfdb0e1bb169c2e1e46 235 SUPERFAMILY SSF52172 2 127 2.42E-42 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS02880 b6a858fcdf273dfdb0e1bb169c2e1e46 235 SMART SM00862 155 231 8.0E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS02880 b6a858fcdf273dfdb0e1bb169c2e1e46 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 3.6E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS02880 b6a858fcdf273dfdb0e1bb169c2e1e46 235 Gene3D G3DSA:1.10.10.10 132 233 1.9E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Gene3D G3DSA:3.30.450.40 526 673 1.8E-4 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 SUPERFAMILY SSF55874 743 908 1.44E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Pfam PF13493 Domain of unknown function (DUF4118) 419 523 2.2E-27 T 11-11-2016 IPR025201 Sensor protein KdpD, transmembrane domain Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Pfam PF00582 Universal stress protein family 264 376 1.1E-5 T 11-11-2016 IPR006016 UspA GO:0006950 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Pfam PF13492 GAF domain 552 667 1.2E-6 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Gene3D G3DSA:1.20.120.620 416 519 9.2E-33 T 11-11-2016 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 SMART SM00387 798 909 2.2E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Gene3D G3DSA:3.30.565.10 741 908 1.2E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 800 908 1.0E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 894 907 2.4E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 870 888 2.4E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 835 849 2.4E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 PRINTS PR00344 Bacterial sensor protein C-terminal signature 853 863 2.4E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Gene3D G3DSA:1.10.287.130 682 740 1.5E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Gene3D G3DSA:3.40.50.300 32 240 1.6E-96 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 SUPERFAMILY SSF52402 263 388 3.35E-9 T 11-11-2016 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 SMART SM00388 686 754 2.7E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Gene3D G3DSA:3.40.50.620 262 360 2.9E-9 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 SUPERFAMILY SSF47384 681 755 2.94E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 33 241 2.0E-94 T 11-11-2016 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 Gferi_RS07640 ba420895852b08cfcb245c3fefb09fea 909 Pfam PF00512 His Kinase A (phospho-acceptor) domain 687 754 2.2E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 Gene3D G3DSA:3.30.70.20 86 136 1.3E-13 T 11-11-2016 Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 Gene3D G3DSA:3.30.70.20 7 56 5.6E-8 T 11-11-2016 Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 Pfam PF12800 4Fe-4S binding domain 47 60 0.0068 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 Pfam PF12800 4Fe-4S binding domain 77 92 0.59 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 Pfam PF12800 4Fe-4S binding domain 8 22 0.041 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 Gene3D G3DSA:3.30.70.20 57 85 4.4E-11 T 11-11-2016 Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 79 90 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 Pfam PF00037 4Fe-4S binding domain 100 121 2.8E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 SUPERFAMILY SSF54862 8 127 1.35E-24 T 11-11-2016 Gferi_RS16250 664c5462f1722df25b0c5cbdfca8c796 144 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 106 117 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26060 47dd205a47ec61fb65431e922f320451 215 Pfam PF06130 Phosphate propanoyltransferase 139 203 8.5E-14 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS26060 47dd205a47ec61fb65431e922f320451 215 Pfam PF06130 Phosphate propanoyltransferase 30 109 4.4E-29 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS26060 47dd205a47ec61fb65431e922f320451 215 PIRSF PIRSF010130 2 215 4.4E-83 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS07515 09c839c17ddf58648f2bd4851a543647 341 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS07515 09c839c17ddf58648f2bd4851a543647 341 SUPERFAMILY SSF50331 227 337 1.08E-7 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal Gferi_RS07515 09c839c17ddf58648f2bd4851a543647 341 Gene3D G3DSA:3.40.50.300 7 234 5.5E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07515 09c839c17ddf58648f2bd4851a543647 341 SMART SM00382 28 211 7.0E-19 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07515 09c839c17ddf58648f2bd4851a543647 341 Pfam PF08402 TOBE domain 261 329 8.5E-6 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Gferi_RS07515 09c839c17ddf58648f2bd4851a543647 341 SUPERFAMILY SSF52540 7 240 1.12E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07515 09c839c17ddf58648f2bd4851a543647 341 Pfam PF00005 ABC transporter 20 161 6.4E-36 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SUPERFAMILY SSF55785 123 246 2.44E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SUPERFAMILY SSF55874 495 664 4.32E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Pfam PF00512 His Kinase A (phospho-acceptor) domain 435 505 1.0E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SMART SM00086 85 127 0.0031 T 11-11-2016 IPR001610 PAC motif Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SMART SM00086 373 415 16.0 T 11-11-2016 IPR001610 PAC motif Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SUPERFAMILY SSF55785 19 128 2.42E-18 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 554 661 4.6E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SMART SM00091 139 205 3.1 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SMART SM00091 14 80 9.1E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SMART SM00091 298 368 0.0026 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SMART SM00387 552 664 3.3E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Gene3D G3DSA:3.30.450.20 127 245 3.2E-13 T 11-11-2016 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Pfam PF08447 PAS fold 37 121 6.8E-10 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SMART SM00388 435 506 5.8E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Gene3D G3DSA:3.30.450.20 287 414 1.2E-23 T 11-11-2016 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SUPERFAMILY SSF47384 418 506 1.41E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 15 134 1.0E-18 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 261 1.3E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 294 422 1.7E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 624 642 4.3E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 607 617 4.3E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 648 661 4.3E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 603 4.3E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Gene3D G3DSA:3.30.450.20 17 126 1.0E-18 T 11-11-2016 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Pfam PF08448 PAS fold 146 255 1.2E-10 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Pfam PF08448 PAS fold 319 416 1.3E-11 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Gene3D G3DSA:3.30.565.10 492 663 9.3E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 SUPERFAMILY SSF55785 283 413 9.42E-21 T 11-11-2016 IPR000014 PAS domain Gferi_RS12690 970ea035970dc8115f1c66dcfb00d2c4 701 Gene3D G3DSA:1.10.287.130 427 491 3.4E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS12300 dd76c86aca33becd71c6ddc0ffb526b7 82 Pfam PF10704 Protein of unknown function (DUF2508) 18 77 2.3E-13 T 11-11-2016 IPR019644 Protein of unknown function DUF2508 Gferi_RS06450 8304e6816e10325f2389e4d9d28afe45 302 Pfam PF02374 Anion-transporting ATPase 6 289 1.0E-91 T 11-11-2016 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 Gferi_RS06450 8304e6816e10325f2389e4d9d28afe45 302 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 9 288 1.5E-82 T 11-11-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 Gferi_RS06450 8304e6816e10325f2389e4d9d28afe45 302 Gene3D G3DSA:3.40.50.300 2 264 4.9E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06450 8304e6816e10325f2389e4d9d28afe45 302 SUPERFAMILY SSF52540 1 263 1.95E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07950 3cf046c77fc269d922e3944ecf504ba0 274 PIRSF PIRSF006648 2 272 3.6E-36 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS07950 3cf046c77fc269d922e3944ecf504ba0 274 Pfam PF01061 ABC-2 type transporter 22 230 8.6E-23 T 11-11-2016 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Gferi_RS07950 3cf046c77fc269d922e3944ecf504ba0 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 151 175 2.2E-10 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS07950 3cf046c77fc269d922e3944ecf504ba0 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 208 227 2.2E-10 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS07950 3cf046c77fc269d922e3944ecf504ba0 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 70 92 2.2E-10 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS07950 3cf046c77fc269d922e3944ecf504ba0 274 PRINTS PR00164 ABC-2 type transport system membrane protein signature 188 207 2.2E-10 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS09415 a287c452ae8882abe8e841321ea8b299 429 Pfam PF00188 Cysteine-rich secretory protein family 311 425 4.4E-16 T 11-11-2016 IPR014044 CAP domain Gferi_RS09415 a287c452ae8882abe8e841321ea8b299 429 SUPERFAMILY SSF55797 301 427 5.23E-26 T 11-11-2016 IPR014044 CAP domain Gferi_RS09415 a287c452ae8882abe8e841321ea8b299 429 Pfam PF14504 CAP-associated N-terminal 157 292 4.7E-37 T 11-11-2016 IPR029410 CAP-associated domain Gferi_RS09415 a287c452ae8882abe8e841321ea8b299 429 SUPERFAMILY SSF55383 49 131 1.44E-28 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS09415 a287c452ae8882abe8e841321ea8b299 429 Gene3D G3DSA:3.30.457.10 50 128 6.0E-32 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS09415 a287c452ae8882abe8e841321ea8b299 429 Pfam PF07833 Copper amine oxidase N-terminal domain 47 138 3.6E-32 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS09415 a287c452ae8882abe8e841321ea8b299 429 Gene3D G3DSA:3.40.33.10 301 427 5.6E-14 T 11-11-2016 IPR014044 CAP domain Gferi_RS13060 747af49c9278ea961c4e56f32136d1ed 188 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 14 186 7.6E-68 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS13060 747af49c9278ea961c4e56f32136d1ed 188 SUPERFAMILY SSF110391 13 186 1.83E-60 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS13060 747af49c9278ea961c4e56f32136d1ed 188 PIRSF PIRSF016897 3 188 1.0E-70 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS13060 747af49c9278ea961c4e56f32136d1ed 188 Gene3D G3DSA:3.20.20.400 3 186 7.7E-71 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS12390 1b6a26741d60d7463cf0781bb9d8dc73 240 Gene3D G3DSA:3.40.50.1360 1 238 2.2E-95 T 11-11-2016 Gferi_RS12390 1b6a26741d60d7463cf0781bb9d8dc73 240 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 240 41.303 T 11-11-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS12390 1b6a26741d60d7463cf0781bb9d8dc73 240 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 28 228 7.1E-17 T 11-11-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 Gferi_RS12390 1b6a26741d60d7463cf0781bb9d8dc73 240 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 238 1.9E-95 T 11-11-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS12390 1b6a26741d60d7463cf0781bb9d8dc73 240 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 120 138 - T 11-11-2016 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS12390 1b6a26741d60d7463cf0781bb9d8dc73 240 SUPERFAMILY SSF100950 1 238 5.58E-93 T 11-11-2016 Gferi_RS05630 a3b813b2649b035245ebf53fcee977ce 146 Pfam PF00293 NUDIX domain 5 121 2.2E-17 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS05630 a3b813b2649b035245ebf53fcee977ce 146 SUPERFAMILY SSF55811 3 127 1.9E-30 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05630 a3b813b2649b035245ebf53fcee977ce 146 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS05630 a3b813b2649b035245ebf53fcee977ce 146 PRINTS PR00502 NUDIX hydrolase family signature 32 46 1.8E-7 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Gferi_RS05630 a3b813b2649b035245ebf53fcee977ce 146 PRINTS PR00502 NUDIX hydrolase family signature 46 61 1.8E-7 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Gferi_RS05630 a3b813b2649b035245ebf53fcee977ce 146 Gene3D G3DSA:3.90.79.10 3 126 1.7E-27 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS21875 eac3e86c417dcb04a30dade260892ca5 785 Pfam PF00391 PEP-utilising enzyme, mobile domain 708 779 8.4E-25 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS21875 eac3e86c417dcb04a30dade260892ca5 785 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 206 251 1.5E-9 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS21875 eac3e86c417dcb04a30dade260892ca5 785 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 47 194 1.0E-34 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS21875 eac3e86c417dcb04a30dade260892ca5 785 SUPERFAMILY SSF56059 1 289 3.3E-64 T 11-11-2016 Gferi_RS21875 eac3e86c417dcb04a30dade260892ca5 785 SUPERFAMILY SSF52009 674 783 7.19E-29 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS21875 eac3e86c417dcb04a30dade260892ca5 785 Gene3D G3DSA:3.30.1490.20 3 145 8.4E-28 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS21875 eac3e86c417dcb04a30dade260892ca5 785 Gene3D G3DSA:3.50.30.10 698 783 3.6E-29 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS21875 eac3e86c417dcb04a30dade260892ca5 785 Gene3D G3DSA:3.30.470.20 146 248 1.2E-26 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 11-11-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 7.7E-154 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 SUPERFAMILY SSF53901 271 391 1.09E-44 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 Pfam PF02803 Thiolase, C-terminal domain 271 391 5.5E-51 T 11-11-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 11-11-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 11-11-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 Gene3D G3DSA:3.40.47.10 142 193 3.7E-73 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 Gene3D G3DSA:3.40.47.10 277 391 3.7E-73 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 Pfam PF00108 Thiolase, N-terminal domain 4 263 7.9E-111 T 11-11-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 SUPERFAMILY SSF53901 3 270 1.32E-94 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 PIRSF PIRSF000429 1 392 1.2E-136 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 Gene3D G3DSA:3.40.47.10 194 276 2.0E-79 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11155 aee963ec18ef045c67b9de71c67a5e4c 392 Gene3D G3DSA:3.40.47.10 3 123 2.0E-79 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 Gene3D G3DSA:3.40.50.300 325 508 2.6E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 Gene3D G3DSA:3.40.50.300 2 90 3.9E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 Gene3D G3DSA:3.40.50.300 124 280 3.9E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 Pfam PF12848 ABC transporter 230 315 2.6E-21 T 11-11-2016 IPR032781 ABC-transporter extension domain Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 SUPERFAMILY SSF52540 4 244 1.72E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 SUPERFAMILY SSF52540 308 507 5.51E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 SMART SM00382 349 511 1.0E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 SMART SM00382 28 236 1.2E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 Pfam PF00005 ABC transporter 20 191 2.3E-26 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS15110 7e49ee029db8f5a432711cb3d2febf56 518 Pfam PF00005 ABC transporter 341 469 4.2E-20 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14735 6d7e8cdaf5d0d988be026ea5bfa6bae5 315 PRINTS PR00990 Ribokinase signature 27 46 1.5E-6 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS14735 6d7e8cdaf5d0d988be026ea5bfa6bae5 315 PRINTS PR00990 Ribokinase signature 182 197 1.5E-6 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS14735 6d7e8cdaf5d0d988be026ea5bfa6bae5 315 PRINTS PR00990 Ribokinase signature 221 232 1.5E-6 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS14735 6d7e8cdaf5d0d988be026ea5bfa6bae5 315 Pfam PF00294 pfkB family carbohydrate kinase 3 299 2.1E-56 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS14735 6d7e8cdaf5d0d988be026ea5bfa6bae5 315 SUPERFAMILY SSF53613 1 306 2.49E-83 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS14735 6d7e8cdaf5d0d988be026ea5bfa6bae5 315 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 251 264 - T 11-11-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Gferi_RS14735 6d7e8cdaf5d0d988be026ea5bfa6bae5 315 Gene3D G3DSA:3.40.1190.20 1 309 6.8E-92 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 SUPERFAMILY SSF54980 398 475 9.35E-19 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 TIGRFAM TIGR00484 EF-G: translation elongation factor G 4 685 1.6E-223 T 11-11-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Pfam PF03764 Elongation factor G, domain IV 474 590 2.9E-41 T 11-11-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Pfam PF14492 Elongation Factor G, domain II 398 471 1.8E-25 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Gene3D G3DSA:3.30.70.870 399 471 2.4E-25 T 11-11-2016 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Pfam PF00679 Elongation factor G C-terminus 592 678 2.1E-29 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 166 8.7E-19 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 PRINTS PR00315 GTP-binding elongation factor signature 77 87 1.4E-7 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 PRINTS PR00315 GTP-binding elongation factor signature 129 138 1.4E-7 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 PRINTS PR00315 GTP-binding elongation factor signature 93 104 1.4E-7 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 PRINTS PR00315 GTP-binding elongation factor signature 11 24 1.4E-7 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Gene3D G3DSA:3.40.50.300 3 280 1.7E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 SUPERFAMILY SSF52540 5 276 7.04E-88 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Gene3D G3DSA:3.30.70.240 591 678 2.4E-32 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 SUPERFAMILY SSF54211 476 591 3.03E-43 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 SMART SM00889 474 590 1.2E-68 T 11-11-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Pfam PF03144 Elongation factor Tu domain 2 318 385 4.6E-8 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 SMART SM00838 592 680 5.0E-43 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Gene3D G3DSA:2.40.30.10 299 398 3.4E-29 T 11-11-2016 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Pfam PF00009 Elongation factor Tu GTP binding domain 8 276 1.7E-45 T 11-11-2016 Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 Gene3D G3DSA:3.30.230.10 478 590 3.9E-48 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 SUPERFAMILY SSF50447 259 394 9.51E-30 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS17090 50003739641d9c8f293cd2ed275cdd03 688 SUPERFAMILY SSF54980 595 683 5.28E-28 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS14405 2930cf5cc794f6553e0637de494e0cb1 556 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 460 471 - T 11-11-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS14405 2930cf5cc794f6553e0637de494e0cb1 556 SUPERFAMILY SSF143975 1 371 1.83E-140 T 11-11-2016 Gferi_RS14405 2930cf5cc794f6553e0637de494e0cb1 556 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 552 47.344 T 11-11-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS14405 2930cf5cc794f6553e0637de494e0cb1 556 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 119 129 - T 11-11-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS14405 2930cf5cc794f6553e0637de494e0cb1 556 SUPERFAMILY SSF52016 372 553 1.41E-64 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS14405 2930cf5cc794f6553e0637de494e0cb1 556 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 14 552 2.6E-239 T 11-11-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS14405 2930cf5cc794f6553e0637de494e0cb1 556 Pfam PF00920 Dehydratase family 31 549 1.6E-225 T 11-11-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 PIRSF PIRSF037677 1 857 3.8E-183 T 11-11-2016 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Gene3D G3DSA:1.10.1420.10 270 476 6.3E-54 T 11-11-2016 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 4 865 25.891 T 11-11-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Gene3D G3DSA:3.40.50.300 575 809 2.6E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 SMART SM00534 617 806 1.9E-115 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 SUPERFAMILY SSF55271 3 112 1.7E-44 T 11-11-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Pfam PF05192 MutS domain III 276 567 2.0E-47 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Gene3D G3DSA:3.30.420.110 123 263 7.7E-34 T 11-11-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Gene3D G3DSA:3.40.1170.10 1 117 2.9E-52 T 11-11-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 SMART SM00533 291 599 3.7E-107 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Pfam PF00488 MutS domain V 621 809 8.5E-83 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Pfam PF05188 MutS domain II 125 259 7.1E-19 T 11-11-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 SUPERFAMILY SSF53150 111 273 1.29E-38 T 11-11-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 4 869 0.0 T 11-11-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 SUPERFAMILY SSF52540 575 809 2.38E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Pfam PF05190 MutS family domain IV 437 527 3.3E-29 T 11-11-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 Pfam PF01624 MutS domain I 5 115 3.7E-46 T 11-11-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 SUPERFAMILY SSF48334 274 573 4.97E-94 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS27230 848cbb3ab4c345d63a8b27e2c4d5cb05 877 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 698 714 - T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS02400 16674373c68baed5a0cd21f0fc671034 782 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 107 762 3.6E-91 T 11-11-2016 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 Gferi_RS02400 16674373c68baed5a0cd21f0fc671034 782 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 242 406 7.5E-29 T 11-11-2016 IPR004477 ComEC/Rec2-related protein Gferi_RS02400 16674373c68baed5a0cd21f0fc671034 782 Pfam PF00753 Metallo-beta-lactamase superfamily 523 731 3.7E-18 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02400 16674373c68baed5a0cd21f0fc671034 782 Gene3D G3DSA:3.60.15.10 515 750 5.1E-32 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02400 16674373c68baed5a0cd21f0fc671034 782 SUPERFAMILY SSF56281 516 767 2.62E-46 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02400 16674373c68baed5a0cd21f0fc671034 782 SMART SM00849 526 734 2.4E-9 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02400 16674373c68baed5a0cd21f0fc671034 782 Pfam PF03772 Competence protein 222 477 3.9E-59 T 11-11-2016 IPR004477 ComEC/Rec2-related protein Gferi_RS02400 16674373c68baed5a0cd21f0fc671034 782 Pfam PF13567 Domain of unknown function (DUF4131) 13 176 8.0E-20 T 11-11-2016 IPR025405 Domain of unknown function DUF4131 Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 Gene3D G3DSA:1.20.1560.10 138 443 3.4E-38 T 11-11-2016 Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 SMART SM00382 495 677 5.8E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 TIGRFAM TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein 1 700 1.5E-260 T 11-11-2016 IPR022514 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 Pfam PF03412 Peptidase C39 family 2 123 2.5E-33 T 11-11-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 SUPERFAMILY SSF52540 464 700 3.68E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 ProSitePatterns PS00211 ABC transporters family signature. 606 620 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 Gene3D G3DSA:3.90.70.10 4 122 7.2E-19 T 11-11-2016 Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 Gene3D G3DSA:3.40.50.300 468 696 5.4E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 Pfam PF00005 ABC transporter 487 634 7.6E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 Pfam PF00664 ABC transporter transmembrane region 163 418 4.7E-18 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS04895 27f33b5fb94db50332e1e4c97deddbe4 702 SUPERFAMILY SSF90123 138 446 3.92E-42 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS20535 f26a526d4934c13255e0f6f8003f446f 379 SUPERFAMILY SSF53756 7 376 1.29E-71 T 11-11-2016 Gferi_RS20535 f26a526d4934c13255e0f6f8003f446f 379 Pfam PF00534 Glycosyl transferases group 1 203 351 4.8E-24 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS20535 f26a526d4934c13255e0f6f8003f446f 379 Pfam PF13439 Glycosyltransferase Family 4 18 178 4.1E-24 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Gferi_RS20535 f26a526d4934c13255e0f6f8003f446f 379 Gene3D G3DSA:3.40.50.2000 165 351 3.1E-17 T 11-11-2016 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 SUPERFAMILY SSF50677 200 384 8.9E-48 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 Gene3D G3DSA:1.10.730.10 630 814 3.3E-48 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 42 53 4.1E-29 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 548 557 4.1E-29 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 382 397 4.1E-29 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 221 244 4.1E-29 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 508 521 4.1E-29 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 2 1028 13.587 T 11-11-2016 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 SUPERFAMILY SSF47323 644 879 2.06E-54 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 Gene3D G3DSA:3.40.50.620 387 623 1.1E-146 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 Gene3D G3DSA:3.40.50.620 12 195 1.1E-146 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 SUPERFAMILY SSF52374 384 636 7.78E-135 T 11-11-2016 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 SUPERFAMILY SSF52374 12 199 7.78E-135 T 11-11-2016 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 Pfam PF08264 Anticodon-binding domain of tRNA 676 822 1.1E-30 T 11-11-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 620 2.7E-188 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 Gene3D G3DSA:3.90.740.10 203 370 7.0E-56 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Gferi_RS22985 5f168950c86a2d7fd48a6d0d67fa5f17 1032 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 12 831 1.9E-293 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 SUPERFAMILY SSF50249 8 116 1.22E-31 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 480 496 1.3E-26 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 216 229 1.3E-26 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 524 538 1.3E-26 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 199 211 1.3E-26 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 Gene3D G3DSA:3.30.930.10 420 590 2.8E-115 T 11-11-2016 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 Gene3D G3DSA:3.30.930.10 141 285 2.8E-115 T 11-11-2016 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 Pfam PF01336 OB-fold nucleic acid binding domain 26 109 5.9E-16 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 9 569 37.296 T 11-11-2016 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 SUPERFAMILY SSF55261 298 424 1.06E-38 T 11-11-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 8 589 6.8E-247 T 11-11-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 Reactome: R-HSA-379726 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 SUPERFAMILY SSF55681 430 589 1.22E-105 T 11-11-2016 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 SUPERFAMILY SSF55681 116 301 1.22E-105 T 11-11-2016 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 Pfam PF00152 tRNA synthetases class II (D, K and N) 126 564 1.3E-110 T 11-11-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 Gene3D G3DSA:2.40.50.140 8 115 3.1E-37 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 Gene3D G3DSA:3.30.1360.30 286 419 1.1E-45 T 11-11-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Gferi_RS26705 d8f0156676a52d59fdfe5a112b410c3d 593 Pfam PF02938 GAD domain 317 411 3.1E-26 T 11-11-2016 IPR029351 GAD domain Reactome: R-HSA-379726 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 Gene3D G3DSA:3.30.565.10 299 462 1.5E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 SUPERFAMILY SSF47384 229 313 4.51E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 311 6.8E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 SMART SM00387 354 464 1.4E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 SUPERFAMILY SSF55874 316 462 1.57E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 462 3.2E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 SUPERFAMILY SSF158472 187 235 2.09E-10 T 11-11-2016 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 463 1.6E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 1.6E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 1.6E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 419 1.6E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 SMART SM00388 246 312 2.2E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 SMART SM00304 186 238 1.6E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 Pfam PF00672 HAMP domain 167 235 1.4E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07590 5faff95862410bfd20e9da505030664a 464 Gene3D G3DSA:1.10.287.130 240 298 1.1E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08695 74d40cecf46c3eb48535ace1ca52429d 432 Pfam PF05893 Acyl-CoA reductase (LuxC) 41 422 1.7E-73 T 11-11-2016 IPR008670 Acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 Gferi_RS08695 74d40cecf46c3eb48535ace1ca52429d 432 SUPERFAMILY SSF53720 87 286 8.07E-10 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS24535 b54b7cc73fc19b31befaef39cea35fb9 115 Gene3D G3DSA:1.20.120.580 66 107 8.8E-8 T 11-11-2016 Gferi_RS24535 b54b7cc73fc19b31befaef39cea35fb9 115 Pfam PF01934 Protein of unknown function DUF86 11 106 1.7E-27 T 11-11-2016 IPR008201 Protein of unknown function DUF86 Gferi_RS07860 6bc7046df52c8f37e8341eda258c43d5 333 Gene3D G3DSA:1.10.1530.10 1 71 4.7E-21 T 11-11-2016 Gferi_RS07860 6bc7046df52c8f37e8341eda258c43d5 333 SUPERFAMILY SSF89733 1 333 8.76E-94 T 11-11-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS07860 6bc7046df52c8f37e8341eda258c43d5 333 Gene3D G3DSA:3.30.1370.60 72 270 4.5E-67 T 11-11-2016 Gferi_RS07860 6bc7046df52c8f37e8341eda258c43d5 333 Pfam PF02615 Malate/L-lactate dehydrogenase 3 330 3.8E-103 T 11-11-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS23770 ba67b01b35cf43f5571d7eb1d1af0ebf 126 Gene3D G3DSA:1.10.10.10 1 126 2.0E-36 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23770 ba67b01b35cf43f5571d7eb1d1af0ebf 126 Pfam PF02082 Transcriptional regulator 1 83 2.0E-26 T 11-11-2016 IPR000944 Transcription regulator Rrf2-type Gferi_RS23770 ba67b01b35cf43f5571d7eb1d1af0ebf 126 SUPERFAMILY SSF46785 2 125 1.96E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23770 ba67b01b35cf43f5571d7eb1d1af0ebf 126 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 126 1.6E-33 T 11-11-2016 IPR000944 Transcription regulator Rrf2-type Gferi_RS25155 9920b4f0d82c08e193e05c9463f200ac 308 Pfam PF01145 SPFH domain / Band 7 family 23 219 9.8E-22 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS25155 9920b4f0d82c08e193e05c9463f200ac 308 TIGRFAM TIGR01933 hflK: HflK protein 23 306 3.4E-61 T 11-11-2016 IPR010201 HflK GO:0016021 Gferi_RS25155 9920b4f0d82c08e193e05c9463f200ac 308 SMART SM00244 20 205 3.4E-21 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS25155 9920b4f0d82c08e193e05c9463f200ac 308 SUPERFAMILY SSF117892 100 211 5.1E-17 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS25155 9920b4f0d82c08e193e05c9463f200ac 308 Gene3D G3DSA:1.20.5.620 205 235 1.2E-4 T 11-11-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain Gferi_RS09515 98017691433920a638b43ce610e43de4 340 Gene3D G3DSA:3.40.50.300 2 264 4.0E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09515 98017691433920a638b43ce610e43de4 340 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09515 98017691433920a638b43ce610e43de4 340 Pfam PF00005 ABC transporter 28 184 5.7E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS09515 98017691433920a638b43ce610e43de4 340 SMART SM00382 35 242 1.1E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09515 98017691433920a638b43ce610e43de4 340 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 301 8.7E-21 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS09515 98017691433920a638b43ce610e43de4 340 SUPERFAMILY SSF52540 35 320 4.94E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09515 98017691433920a638b43ce610e43de4 340 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 321 4.8E-27 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS27105 24643111400d963d096842fec479b63d 102 Gene3D G3DSA:1.10.10.10 32 89 3.2E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS27105 24643111400d963d096842fec479b63d 102 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 60 86 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS27105 24643111400d963d096842fec479b63d 102 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 89 1.9E-14 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS27105 24643111400d963d096842fec479b63d 102 SUPERFAMILY SSF88659 2 90 3.92E-19 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS27105 24643111400d963d096842fec479b63d 102 PRINTS PR00046 Major sigma-70 factor signature 39 51 2.1E-8 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS27105 24643111400d963d096842fec479b63d 102 PRINTS PR00046 Major sigma-70 factor signature 60 75 2.1E-8 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS27105 24643111400d963d096842fec479b63d 102 PRINTS PR00046 Major sigma-70 factor signature 75 86 2.1E-8 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS27105 24643111400d963d096842fec479b63d 102 Pfam PF04545 Sigma-70, region 4 38 87 7.2E-16 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SMART SM00028 916 949 52.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SMART SM00028 712 745 43.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SMART SM00028 792 825 89.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SMART SM00028 145 178 190.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SMART SM00028 876 909 0.025 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SMART SM00028 836 869 0.063 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SUPERFAMILY SSF48452 687 795 3.07E-6 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 Pfam PF13191 AAA ATPase domain 248 423 6.3E-14 T 11-11-2016 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 Gene3D G3DSA:3.40.50.300 247 428 1.7E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 Gene3D G3DSA:1.25.40.10 146 210 3.9E-28 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 Gene3D G3DSA:1.25.40.10 794 948 3.9E-28 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 Gene3D G3DSA:1.25.40.10 719 759 3.9E-28 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SUPERFAMILY SSF52540 244 521 7.89E-16 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SUPERFAMILY SSF48452 773 1013 8.13E-22 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SMART SM01043 97 229 1.8E-15 T 11-11-2016 IPR005158 Bacterial transcriptional activator domain Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 Pfam PF03704 Bacterial transcriptional activator domain 107 229 2.4E-13 T 11-11-2016 IPR005158 Bacterial transcriptional activator domain Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 SUPERFAMILY SSF48452 128 232 5.96E-14 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10290 56aebe3c9faea0c42360d990220cb88e 1035 Pfam PF13424 Tetratricopeptide repeat 835 905 1.4E-7 T 11-11-2016 Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 Gene3D G3DSA:2.60.120.10 14 92 1.6E-14 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 Pfam PF02311 AraC-like ligand binding domain 22 129 4.3E-11 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 Gene3D G3DSA:1.10.10.60 227 282 3.1E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 SMART SM00342 190 273 3.0E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 SUPERFAMILY SSF46689 227 277 4.48E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 227 269 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 SUPERFAMILY SSF51182 23 91 5.63E-10 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 Pfam PF12833 Helix-turn-helix domain 196 274 2.1E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21995 8a2a23d7d260dc28728d21e4fd4ce4b5 307 Gene3D G3DSA:1.10.10.60 172 222 5.6E-4 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS16700 e8ad31fe081f89c455a712af514badb5 320 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 84 239 1.3E-36 T 11-11-2016 IPR004474 Cell envelope-related transcriptional attenuator domain Gferi_RS16700 e8ad31fe081f89c455a712af514badb5 320 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 83 238 1.6E-39 T 11-11-2016 IPR004474 Cell envelope-related transcriptional attenuator domain Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 Gene3D G3DSA:3.30.499.10 273 420 1.7E-59 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 ProSitePatterns PS00450 Aconitase family signature 1. 292 308 - T 11-11-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 3 417 1.7E-162 T 11-11-2016 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 SUPERFAMILY SSF53732 1 419 1.24E-147 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 PRINTS PR00415 Aconitase family signature 352 365 1.8E-16 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 PRINTS PR00415 Aconitase family signature 114 127 1.8E-16 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 PRINTS PR00415 Aconitase family signature 128 143 1.8E-16 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 PRINTS PR00415 Aconitase family signature 204 217 1.8E-16 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 PRINTS PR00415 Aconitase family signature 190 203 1.8E-16 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 Gene3D G3DSA:3.40.1060.10 161 265 5.0E-34 T 11-11-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 Gene3D G3DSA:3.30.499.10 1 159 5.1E-40 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 3 419 50.068 T 11-11-2016 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 Pfam PF00330 Aconitase family (aconitate hydratase) 8 411 2.2E-101 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 TIGRFAM TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit 3 419 1.2E-224 T 11-11-2016 IPR011823 3-isopropylmalate dehydratase, large subunit, bacteria GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 4 416 3.3E-177 T 11-11-2016 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS15740 db84a2fe01aa365135f037076de769d2 422 ProSitePatterns PS01244 Aconitase family signature 2. 352 365 - T 11-11-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 Pfam PF02743 Cache domain 37 278 1.3E-30 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 SMART SM00283 439 700 8.1E-73 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 Pfam PF00672 HAMP domain 297 361 2.6E-16 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 SUPERFAMILY SSF58104 672 757 9.16E-10 T 11-11-2016 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 SUPERFAMILY SSF58104 336 454 2.46E-13 T 11-11-2016 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 Gene3D G3DSA:3.30.450.20 155 294 3.0E-21 T 11-11-2016 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 SUPERFAMILY SSF103190 89 194 1.96E-6 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 SUPERFAMILY SSF58104 445 685 3.92E-63 T 11-11-2016 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 SMART SM00304 371 421 65.0 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 SMART SM00304 316 368 1.6E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 460 489 4.7E-23 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 566 595 4.7E-23 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 537 564 4.7E-23 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 Gene3D G3DSA:1.10.287.950 373 452 4.3E-4 T 11-11-2016 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 Gene3D G3DSA:1.10.287.950 459 671 1.7E-55 T 11-11-2016 Gferi_RS09350 e9a4ac00fcc8986076e17535c7d925a3 758 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 493 684 1.7E-51 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Gene3D G3DSA:3.30.70.240 406 495 1.0E-24 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Pfam PF00009 Elongation factor Tu GTP binding domain 7 186 4.1E-54 T 11-11-2016 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Pfam PF06421 GTP-binding protein LepA C-terminus 493 599 2.7E-51 T 11-11-2016 IPR013842 GTP-binding protein LepA, C-terminal Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.4E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.4E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.4E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 PRINTS PR00315 GTP-binding elongation factor signature 11 24 1.4E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 PRINTS PR00315 GTP-binding elongation factor signature 54 62 1.4E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 TIGRFAM TIGR01393 lepA: elongation factor 4 7 601 0.0 T 11-11-2016 IPR006297 Elongation factor 4 GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Pfam PF00679 Elongation factor G C-terminus 405 491 8.9E-26 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 SUPERFAMILY SSF54980 298 375 4.32E-18 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Gene3D G3DSA:3.40.50.300 4 198 1.8E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Gene3D G3DSA:3.30.70.870 298 374 1.7E-26 T 11-11-2016 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Gene3D G3DSA:2.40.30.10 199 294 1.2E-28 T 11-11-2016 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 SUPERFAMILY SSF50447 171 293 1.27E-34 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 181 2.2E-19 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Pfam PF03144 Elongation factor Tu domain 2 210 280 2.7E-12 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 SUPERFAMILY SSF54980 404 499 5.76E-27 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 SUPERFAMILY SSF52540 5 210 8.72E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 Hamap MF_00071 Elongation factor 4 [lepA]. 1 603 306.353 T 11-11-2016 IPR006297 Elongation factor 4 GO:0005525 Gferi_RS02370 ef866bba121a3994c22263522ad45035 603 SMART SM00838 406 491 7.7E-4 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 SMART SM00357 3 66 1.3E-30 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 Gene3D G3DSA:2.40.50.140 1 64 9.7E-31 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 11-11-2016 IPR019844 Cold-shock conserved site Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 PRINTS PR00050 Cold shock protein signature 39 57 2.0E-19 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 PRINTS PR00050 Cold shock protein signature 4 19 2.0E-19 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 PRINTS PR00050 Cold shock protein signature 24 33 2.0E-19 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 PIRSF PIRSF002599 1 66 3.3E-25 T 11-11-2016 IPR012156 Cold shock, CspA GO:0003676 Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 SUPERFAMILY SSF50249 1 65 5.91E-25 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS08870 70ed5adefbe359f7a8cee754ddff100b 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 2.1E-30 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 SUPERFAMILY SSF48310 249 624 5.23E-69 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 SUPERFAMILY SSF48310 667 701 5.23E-69 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 25 237 9.3E-47 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 258 699 1.3E-109 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 Gene3D G3DSA:3.60.9.10 20 239 2.8E-51 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 SUPERFAMILY SSF56228 21 239 8.11E-39 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 SMART SM00790 22 240 2.0E-36 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 Gene3D G3DSA:1.10.599.10 668 701 3.1E-54 T 11-11-2016 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 Gferi_RS00550 9775d9132f8113e92052b562d06289ba 713 Gene3D G3DSA:1.10.599.10 431 636 3.1E-54 T 11-11-2016 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 Gferi_RS02565 413e91c59a220b48f8936e19a0659a15 334 SMART SM00354 2 72 1.7E-22 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS02565 413e91c59a220b48f8936e19a0659a15 334 Pfam PF13377 Periplasmic binding protein-like domain 169 329 2.5E-38 T 11-11-2016 Gferi_RS02565 413e91c59a220b48f8936e19a0659a15 334 Gene3D G3DSA:3.40.50.2300 171 331 4.3E-57 T 11-11-2016 Gferi_RS02565 413e91c59a220b48f8936e19a0659a15 334 SUPERFAMILY SSF47413 2 60 1.2E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS02565 413e91c59a220b48f8936e19a0659a15 334 Gene3D G3DSA:1.10.260.40 3 59 1.9E-22 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS02565 413e91c59a220b48f8936e19a0659a15 334 SUPERFAMILY SSF53822 73 330 7.43E-73 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS02565 413e91c59a220b48f8936e19a0659a15 334 Gene3D G3DSA:3.40.50.2300 60 170 1.1E-19 T 11-11-2016 Gferi_RS02565 413e91c59a220b48f8936e19a0659a15 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 4.4E-16 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 Pfam PF00294 pfkB family carbohydrate kinase 17 288 1.1E-48 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 SUPERFAMILY SSF53613 1 284 2.03E-68 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 PIRSF PIRSF000535 1 309 5.4E-87 T 11-11-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 307 4.1E-89 T 11-11-2016 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 Gene3D G3DSA:2.20.150.10 9 34 5.9E-9 T 11-11-2016 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain KEGG: 00052+2.7.1.144|KEGG: 00710+2.7.1.14|MetaCyc: PWY-7077|MetaCyc: PWY-7395 Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 PRINTS PR00990 Ribokinase signature 31 50 3.9E-5 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 PRINTS PR00990 Ribokinase signature 218 229 3.9E-5 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 307 2.4E-96 T 11-11-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Gferi_RS04265 5465c17bed6f6f4e6e673b4aa44ec0bf 310 Gene3D G3DSA:3.40.1190.20 35 309 7.4E-75 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS08845 50ee4552c2ba55e5253c4a1710c682bf 395 SUPERFAMILY SSF89796 1 394 3.01E-148 T 11-11-2016 IPR023606 CoA-transferase family III domain Gferi_RS08845 50ee4552c2ba55e5253c4a1710c682bf 395 Gene3D G3DSA:3.30.1540.10 221 303 1.2E-31 T 11-11-2016 Gferi_RS08845 50ee4552c2ba55e5253c4a1710c682bf 395 Gene3D G3DSA:3.40.50.10540 2 215 2.6E-128 T 11-11-2016 IPR023606 CoA-transferase family III domain Gferi_RS08845 50ee4552c2ba55e5253c4a1710c682bf 395 Gene3D G3DSA:3.40.50.10540 304 394 2.6E-128 T 11-11-2016 IPR023606 CoA-transferase family III domain Gferi_RS08845 50ee4552c2ba55e5253c4a1710c682bf 395 Pfam PF02515 CoA-transferase family III 5 371 5.3E-144 T 11-11-2016 IPR003673 CoA-transferase family III GO:0003824 Gferi_RS16600 114300a3d2c15d9ae4e0deebf2222202 225 Pfam PF13483 Beta-lactamase superfamily domain 2 191 1.6E-27 T 11-11-2016 Gferi_RS16600 114300a3d2c15d9ae4e0deebf2222202 225 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 1 225 39.748 T 11-11-2016 IPR022877 Protein of unknown funcion UPF0173 Gferi_RS16600 114300a3d2c15d9ae4e0deebf2222202 225 Gene3D G3DSA:3.60.15.10 1 225 4.7E-61 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS16600 114300a3d2c15d9ae4e0deebf2222202 225 SMART SM00849 7 191 8.0E-14 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS16600 114300a3d2c15d9ae4e0deebf2222202 225 SUPERFAMILY SSF56281 1 225 4.87E-41 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Pfam PF07724 AAA domain (Cdc48 subfamily) 210 351 5.0E-39 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Pfam PF07724 AAA domain (Cdc48 subfamily) 52 107 6.9E-6 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Gene3D G3DSA:1.10.8.60 357 464 1.1E-34 T 11-11-2016 Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 SMART SM00382 49 358 9.3E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Gene3D G3DSA:3.40.50.300 267 353 2.9E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Gene3D G3DSA:3.40.50.300 3 110 2.9E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 465 42.046 T 11-11-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 465 2.8E-190 T 11-11-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Gene3D G3DSA:1.10.8.10 111 198 7.5E-24 T 11-11-2016 Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Gene3D G3DSA:1.10.8.10 235 265 7.5E-24 T 11-11-2016 Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 SMART SM01086 357 451 6.1E-20 T 11-11-2016 IPR019489 Clp ATPase, C-terminal Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 SUPERFAMILY SSF52540 3 459 2.46E-77 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01010 9e0e6e614931cbd10df233c391cfd059 465 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 357 427 1.9E-7 T 11-11-2016 IPR019489 Clp ATPase, C-terminal Gferi_RS07945 269275371e5d981dd49987be4286e7f9 198 SUPERFAMILY SSF46689 4 87 7.18E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07945 269275371e5d981dd49987be4286e7f9 198 Gene3D G3DSA:1.10.357.10 8 178 8.6E-21 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS07945 269275371e5d981dd49987be4286e7f9 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 62 1.5E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS00650 00e7bd7b9e73f56e63a586029d36725f 350 Gene3D G3DSA:3.40.250.10 7 130 2.4E-33 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS00650 00e7bd7b9e73f56e63a586029d36725f 350 Pfam PF00581 Rhodanese-like domain 13 127 5.1E-8 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS00650 00e7bd7b9e73f56e63a586029d36725f 350 SUPERFAMILY SSF52821 81 136 6.29E-24 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS00650 00e7bd7b9e73f56e63a586029d36725f 350 SUPERFAMILY SSF52821 6 54 6.29E-24 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS00650 00e7bd7b9e73f56e63a586029d36725f 350 SMART SM00450 2 132 1.2E-11 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS00650 00e7bd7b9e73f56e63a586029d36725f 350 Gene3D G3DSA:3.40.50.300 144 344 1.1E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00650 00e7bd7b9e73f56e63a586029d36725f 350 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 16 322 3.5E-94 T 11-11-2016 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 Gferi_RS00650 00e7bd7b9e73f56e63a586029d36725f 350 SUPERFAMILY SSF52540 143 343 1.06E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24775 b768a5d80d39462af26ebdb6661b8601 320 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 42 313 3.6E-27 T 11-11-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 Gferi_RS24775 b768a5d80d39462af26ebdb6661b8601 320 PIRSF PIRSF039012 6 319 3.5E-70 T 11-11-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 Gferi_RS24775 b768a5d80d39462af26ebdb6661b8601 320 SUPERFAMILY SSF53187 30 308 6.95E-37 T 11-11-2016 Gferi_RS24775 b768a5d80d39462af26ebdb6661b8601 320 Gene3D G3DSA:3.40.630.10 34 164 6.3E-15 T 11-11-2016 Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 313 3.3E-40 T 11-11-2016 IPR020801 Polyketide synthase, acyl transferase domain Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 Pfam PF00698 Acyl transferase domain 6 290 1.3E-35 T 11-11-2016 IPR014043 Acyl transferase Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 SUPERFAMILY SSF52151 189 294 3.92E-71 T 11-11-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 SUPERFAMILY SSF52151 4 121 3.92E-71 T 11-11-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 Gene3D G3DSA:3.30.70.250 124 195 1.4E-27 T 11-11-2016 Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 289 4.5E-103 T 11-11-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 Gene3D G3DSA:3.40.366.10 2 121 1.4E-69 T 11-11-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 Gene3D G3DSA:3.40.366.10 196 294 1.4E-69 T 11-11-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 PIRSF PIRSF000446 1 314 3.6E-101 T 11-11-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Gferi_RS01570 4bee19c74f2d85dd068550c3bc2905a0 314 SUPERFAMILY SSF55048 127 196 1.27E-17 T 11-11-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 Gferi_RS12315 c8df491cc7df84db14fa2da6e1733edd 199 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 110.627 T 11-11-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Gferi_RS12315 c8df491cc7df84db14fa2da6e1733edd 199 Pfam PF13662 Toprim domain 82 172 2.5E-26 T 11-11-2016 IPR006171 Toprim domain Gferi_RS12315 c8df491cc7df84db14fa2da6e1733edd 199 ProSitePatterns PS01300 RecR protein signature. 58 79 - T 11-11-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 Gferi_RS12315 c8df491cc7df84db14fa2da6e1733edd 199 TIGRFAM TIGR00615 recR: recombination protein RecR 4 197 3.2E-86 T 11-11-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Gferi_RS12315 c8df491cc7df84db14fa2da6e1733edd 199 Gene3D G3DSA:3.40.50.140 124 171 7.0E-4 T 11-11-2016 IPR006171 Toprim domain Gferi_RS12315 c8df491cc7df84db14fa2da6e1733edd 199 SMART SM00493 81 166 6.2E-15 T 11-11-2016 IPR006171 Toprim domain Gferi_RS12315 c8df491cc7df84db14fa2da6e1733edd 199 Pfam PF02132 RecR protein 41 79 1.9E-14 T 11-11-2016 IPR023628 Recombination protein RecR, C4-type zinc finger Gferi_RS12315 c8df491cc7df84db14fa2da6e1733edd 199 SUPERFAMILY SSF111304 4 199 1.7E-77 T 11-11-2016 IPR023627 Recombination protein RecR Gferi_RS26715 cbc466c1304bb97c5bd92e543de34403 144 PIRSF PIRSF004923 1 144 1.4E-29 T 11-11-2016 IPR026268 Protein RseC Gferi_RS26715 cbc466c1304bb97c5bd92e543de34403 144 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 12 138 8.8E-30 T 11-11-2016 IPR007359 Positive regulator of sigma(E), RseC/MucC Gferi_RS01740 95caf98601b37bd3d4aab71edb6525cb 293 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 293 2.9E-80 T 11-11-2016 IPR005229 Conserved hypothetical protein CHP00255 Gferi_RS01740 95caf98601b37bd3d4aab71edb6525cb 293 Pfam PF03755 YicC-like family, N-terminal region 2 156 1.2E-43 T 11-11-2016 IPR013527 YicC-like, N-terminal Gferi_RS01740 95caf98601b37bd3d4aab71edb6525cb 293 Pfam PF08340 Domain of unknown function (DUF1732) 209 293 1.4E-37 T 11-11-2016 IPR013551 Domain of unknown function DUF1732 Gferi_RS00655 6f9e00d5e550bb749327e8eb3f7c3e9d 765 Gene3D G3DSA:3.40.50.300 377 659 2.7E-90 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00655 6f9e00d5e550bb749327e8eb3f7c3e9d 765 Pfam PF09397 Ftsk gamma domain 694 753 3.3E-30 T 11-11-2016 IPR018541 FtsK gamma domain Gferi_RS00655 6f9e00d5e550bb749327e8eb3f7c3e9d 765 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 50 177 2.1E-7 T 11-11-2016 IPR025199 DNA translocase FtsK, 4TM region Gferi_RS00655 6f9e00d5e550bb749327e8eb3f7c3e9d 765 Pfam PF01580 FtsK/SpoIIIE family 403 542 1.3E-48 T 11-11-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Gferi_RS00655 6f9e00d5e550bb749327e8eb3f7c3e9d 765 SMART SM00382 438 614 4.2E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00655 6f9e00d5e550bb749327e8eb3f7c3e9d 765 SUPERFAMILY SSF46785 691 758 2.72E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00655 6f9e00d5e550bb749327e8eb3f7c3e9d 765 SMART SM00843 691 756 8.8E-39 T 11-11-2016 IPR018541 FtsK gamma domain Gferi_RS00655 6f9e00d5e550bb749327e8eb3f7c3e9d 765 SUPERFAMILY SSF52540 377 665 1.46E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 SUPERFAMILY SSF50331 237 369 3.89E-22 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 SUPERFAMILY SSF52540 5 243 2.3E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 Gene3D G3DSA:3.40.50.300 6 235 3.0E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 Gene3D G3DSA:2.40.50.100 355 370 2.8E-13 T 11-11-2016 Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 Gene3D G3DSA:2.40.50.100 241 290 2.8E-13 T 11-11-2016 Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 Gene3D G3DSA:2.40.50.140 291 352 8.5E-10 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 Pfam PF00005 ABC transporter 21 162 3.8E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06600 8c0d83839a69f02e158ed32adaef129e 370 SMART SM00382 29 212 8.6E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS18745 63601e55b48f5ff5868047db484610a2 461 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 8 450 3.3E-190 T 11-11-2016 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0006461|GO:0009399 Gferi_RS18745 63601e55b48f5ff5868047db484610a2 461 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 45 439 1.6E-113 T 11-11-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Gferi_RS18745 63601e55b48f5ff5868047db484610a2 461 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 129 143 - T 11-11-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Gferi_RS18745 63601e55b48f5ff5868047db484610a2 461 Gene3D G3DSA:3.40.50.1980 193 290 4.8E-34 T 11-11-2016 Gferi_RS18745 63601e55b48f5ff5868047db484610a2 461 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 63 70 - T 11-11-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Gferi_RS18745 63601e55b48f5ff5868047db484610a2 461 SUPERFAMILY SSF53807 8 449 9.81E-138 T 11-11-2016 Gferi_RS18745 63601e55b48f5ff5868047db484610a2 461 Gene3D G3DSA:3.40.50.1980 317 450 4.5E-47 T 11-11-2016 Gferi_RS18745 63601e55b48f5ff5868047db484610a2 461 Gene3D G3DSA:3.40.50.1980 45 180 3.1E-50 T 11-11-2016 Gferi_RS12200 4357e428ce067e8bd090d610d99cb9bd 109 Gene3D G3DSA:3.30.70.120 1 106 3.1E-17 T 11-11-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Gferi_RS12200 4357e428ce067e8bd090d610d99cb9bd 109 SUPERFAMILY SSF54913 1 106 2.13E-13 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta Gferi_RS12200 4357e428ce067e8bd090d610d99cb9bd 109 Pfam PF06153 Cyclic-di-AMP receptor 1 108 1.6E-46 T 11-11-2016 IPR010375 Cyclic-di-AMP receptor Gferi_RS04430 3ee245a52276012d09e9779dd1a28d33 410 Gene3D G3DSA:1.10.1660.10 1 118 1.2E-19 T 11-11-2016 Gferi_RS04430 3ee245a52276012d09e9779dd1a28d33 410 Gene3D G3DSA:3.40.50.150 199 374 2.0E-17 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS04430 3ee245a52276012d09e9779dd1a28d33 410 SUPERFAMILY SSF53335 210 379 1.36E-16 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS04430 3ee245a52276012d09e9779dd1a28d33 410 SUPERFAMILY SSF46955 1 114 4.03E-15 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS04430 3ee245a52276012d09e9779dd1a28d33 410 Pfam PF13411 MerR HTH family regulatory protein 1 66 2.4E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS04430 3ee245a52276012d09e9779dd1a28d33 410 Pfam PF13649 Methyltransferase domain 233 330 1.5E-7 T 11-11-2016 Gferi_RS04430 3ee245a52276012d09e9779dd1a28d33 410 SMART SM00422 1 68 1.0E-5 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS19425 0d5211afac89da3ed4f3cd50baed31d0 453 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 22 445 6.1E-89 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS19425 0d5211afac89da3ed4f3cd50baed31d0 453 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 439 1.5E-79 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS01530 4953a809540dd728798d4f75917ec071 125 Gene3D G3DSA:1.10.10.10 2 96 1.0E-36 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01530 4953a809540dd728798d4f75917ec071 125 Hamap MF_00245 UPF0122 protein . 2 114 19.386 T 11-11-2016 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like Gferi_RS01530 4953a809540dd728798d4f75917ec071 125 SUPERFAMILY SSF88659 3 97 6.92E-32 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01530 4953a809540dd728798d4f75917ec071 125 Pfam PF04297 Putative helix-turn-helix protein, YlxM / p13 like 3 96 2.2E-29 T 11-11-2016 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like Gferi_RS01520 243faf84d6371b165f31c1fe37c67646 89 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 11-11-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS01520 243faf84d6371b165f31c1fe37c67646 89 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 80 1.6E-35 T 11-11-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01520 243faf84d6371b165f31c1fe37c67646 89 Gene3D G3DSA:3.30.1320.10 2 84 4.7E-36 T 11-11-2016 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01520 243faf84d6371b165f31c1fe37c67646 89 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 26.444 T 11-11-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01520 243faf84d6371b165f31c1fe37c67646 89 Pfam PF00886 Ribosomal protein S16 9 67 1.2E-25 T 11-11-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01520 243faf84d6371b165f31c1fe37c67646 89 SUPERFAMILY SSF54565 2 84 4.58E-35 T 11-11-2016 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 SUPERFAMILY SSF46785 5 72 2.05E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 SMART SM00345 9 68 9.1E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 Pfam PF07702 UTRA domain 93 222 1.7E-12 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 3.5E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 3.5E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 SUPERFAMILY SSF64288 56 228 1.4E-16 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 68 1.0E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 SMART SM00866 86 226 0.0031 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 Gene3D G3DSA:1.10.10.10 5 65 8.2E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16325 818e74e639dc614b041b18438a4fde8c 241 Gene3D G3DSA:3.40.1410.10 66 228 4.6E-18 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS07010 dbc704ef616803b5449aded15a82da76 514 SUPERFAMILY SSF51730 12 297 1.96E-38 T 11-11-2016 IPR029041 FAD-linked oxidoreductase-like Gferi_RS07010 dbc704ef616803b5449aded15a82da76 514 Pfam PF12225 Methylene-tetrahydrofolate reductase C terminal 399 489 7.1E-24 T 11-11-2016 IPR022026 Methylene-tetrahydrofolate reductase C-terminal Gferi_RS07010 dbc704ef616803b5449aded15a82da76 514 Gene3D G3DSA:3.20.20.220 13 280 1.2E-35 T 11-11-2016 IPR029041 FAD-linked oxidoreductase-like Gferi_RS07010 dbc704ef616803b5449aded15a82da76 514 Pfam PF02219 Methylenetetrahydrofolate reductase 18 255 6.0E-16 T 11-11-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 Pfam PF06574 FAD synthetase 15 166 2.0E-48 T 11-11-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 Gene3D G3DSA:2.40.30.30 180 309 1.4E-42 T 11-11-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 PIRSF PIRSF004491 1 311 3.2E-101 T 11-11-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 Gene3D G3DSA:3.40.50.620 1 179 2.4E-57 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 SUPERFAMILY SSF52374 16 184 8.89E-33 T 11-11-2016 Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 Pfam PF01687 Riboflavin kinase 184 306 1.4E-33 T 11-11-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 SUPERFAMILY SSF82114 174 308 1.53E-43 T 11-11-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 SMART SM00904 183 308 4.3E-50 T 11-11-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 Gferi_RS00700 08f185ecddfb2e9ca11af9d91df543de 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 19 307 4.4E-77 T 11-11-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 313 1.3E-30 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 281 6.3E-58 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 Gene3D G3DSA:3.40.50.720 2 112 1.2E-34 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 191 213 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 Gene3D G3DSA:3.40.50.720 113 282 6.9E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 SUPERFAMILY SSF52283 2 128 8.69E-31 T 11-11-2016 Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 142 169 - T 11-11-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 220 236 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS22595 db5cb65b15f894cac7752e3361f49c5c 324 SUPERFAMILY SSF51735 98 282 1.12E-56 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 SUPERFAMILY SSF52172 1 185 8.25E-47 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 SUPERFAMILY SSF52540 141 380 5.54E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 Gene3D G3DSA:3.40.50.300 147 313 1.8E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 Pfam PF00072 Response regulator receiver domain 4 113 4.4E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 Gene3D G3DSA:1.10.10.60 402 446 5.9E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 SMART SM00382 161 304 7.7E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 Gene3D G3DSA:1.10.8.60 314 388 4.2E-24 T 11-11-2016 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 Pfam PF02954 Bacterial regulatory protein, Fis family 407 447 1.4E-14 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 430 450 1.4E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 413 430 1.4E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 SMART SM00448 2 113 7.1E-38 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 Gene3D G3DSA:3.40.50.2300 1 146 7.7E-38 T 11-11-2016 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 Pfam PF00158 Sigma-54 interaction domain 141 308 6.6E-74 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS06155 d18eab677eba9bf8da6bbe162213d474 455 SUPERFAMILY SSF46689 355 449 5.38E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS05395 71ec237ff574ed0c4441c2c43a4ad10d 216 Pfam PF02080 TrkA-C domain 149 215 4.5E-12 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05395 71ec237ff574ed0c4441c2c43a4ad10d 216 SUPERFAMILY SSF116726 130 214 7.32E-18 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05395 71ec237ff574ed0c4441c2c43a4ad10d 216 Gene3D G3DSA:3.40.50.720 2 138 1.6E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05395 71ec237ff574ed0c4441c2c43a4ad10d 216 Gene3D G3DSA:3.30.70.1450 149 215 8.8E-17 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05395 71ec237ff574ed0c4441c2c43a4ad10d 216 SUPERFAMILY SSF51735 2 133 5.79E-38 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05395 71ec237ff574ed0c4441c2c43a4ad10d 216 Pfam PF02254 TrkA-N domain 4 119 6.1E-31 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Gferi_RS24080 d91d4767f6271cf2348d775918bd7f03 305 TIGRFAM TIGR03814 Gln_ase: glutaminase A 5 305 1.0E-122 T 11-11-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Gferi_RS24080 d91d4767f6271cf2348d775918bd7f03 305 Pfam PF04960 Glutaminase 19 305 1.0E-118 T 11-11-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Gferi_RS24080 d91d4767f6271cf2348d775918bd7f03 305 SUPERFAMILY SSF56601 2 305 4.48E-112 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS24080 d91d4767f6271cf2348d775918bd7f03 305 Hamap MF_00313 Glutaminase [glsA]. 1 305 46.728 T 11-11-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 Gferi_RS24080 d91d4767f6271cf2348d775918bd7f03 305 Gene3D G3DSA:3.40.710.10 4 305 2.7E-124 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS10720 4958eccb077c91a5d7bd9789f4398d5c 118 Pfam PF03646 FlaG protein 19 116 1.7E-25 T 11-11-2016 IPR005186 FlaG protein Gferi_RS10720 4958eccb077c91a5d7bd9789f4398d5c 118 Gene3D G3DSA:3.30.160.170 27 114 9.3E-25 T 11-11-2016 IPR005186 FlaG protein Gferi_RS10720 4958eccb077c91a5d7bd9789f4398d5c 118 SUPERFAMILY SSF160214 25 118 1.1E-25 T 11-11-2016 IPR005186 FlaG protein Gferi_RS26300 9eca307af9b75d9e38ddc27ef1da33f8 265 PIRSF PIRSF003092 1 265 3.4E-91 T 11-11-2016 IPR025501 ATP binding protein MinD Gferi_RS26300 9eca307af9b75d9e38ddc27ef1da33f8 265 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 261 9.6E-125 T 11-11-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 Gferi_RS26300 9eca307af9b75d9e38ddc27ef1da33f8 265 Gene3D G3DSA:3.40.50.300 1 239 4.2E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26300 9eca307af9b75d9e38ddc27ef1da33f8 265 SUPERFAMILY SSF52540 1 245 8.8E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26300 9eca307af9b75d9e38ddc27ef1da33f8 265 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 208 2.5E-34 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Gferi_RS17840 5421a8552ff300dcaa6e82b85113e27b 254 Gene3D G3DSA:2.40.440.10 58 172 1.3E-23 T 11-11-2016 Gferi_RS17840 5421a8552ff300dcaa6e82b85113e27b 254 Pfam PF01471 Putative peptidoglycan binding domain 192 237 1.9E-6 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS17840 5421a8552ff300dcaa6e82b85113e27b 254 Gene3D G3DSA:1.10.101.10 185 237 1.7E-12 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS17840 5421a8552ff300dcaa6e82b85113e27b 254 SUPERFAMILY SSF141523 58 173 3.14E-20 T 11-11-2016 Gferi_RS17840 5421a8552ff300dcaa6e82b85113e27b 254 Pfam PF03734 L,D-transpeptidase catalytic domain 64 172 3.2E-9 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS17840 5421a8552ff300dcaa6e82b85113e27b 254 SUPERFAMILY SSF47090 182 248 4.71E-11 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 Gene3D G3DSA:3.30.300.20 17 108 3.7E-32 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 SUPERFAMILY SSF54814 2 107 6.02E-37 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 Pfam PF00189 Ribosomal protein S3, C-terminal domain 122 203 2.5E-41 T 11-11-2016 Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 Gene3D G3DSA:3.30.1140.32 111 208 9.6E-45 T 11-11-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 SUPERFAMILY SSF54821 111 207 8.5E-39 T 11-11-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 210 4.5E-93 T 11-11-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 Pfam PF07650 KH domain 38 108 5.4E-14 T 11-11-2016 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 207 38.099 T 11-11-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Gferi_RS17425 3d609cdb09324088869bf94dccc15ffb 282 ProSitePatterns PS00548 Ribosomal protein S3 signature. 164 198 - T 11-11-2016 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 SUPERFAMILY SSF50249 3 90 4.38E-20 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 TIGRFAM TIGR00458 aspS_nondisc: aspartate--tRNA(Asn) ligase 14 429 9.0E-131 T 11-11-2016 IPR004523 Aspartyl-tRNA synthetase, archaeal-type GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 SUPERFAMILY SSF55681 104 428 5.69E-82 T 11-11-2016 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 Pfam PF00152 tRNA synthetases class II (D, K and N) 110 423 3.3E-79 T 11-11-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 429 24.996 T 11-11-2016 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 Gene3D G3DSA:2.40.50.140 5 92 4.2E-21 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 Pfam PF01336 OB-fold nucleic acid binding domain 17 87 7.9E-11 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 PRINTS PR01042 Aspartyl-tRNA synthetase signature 344 360 7.2E-20 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 PRINTS PR01042 Aspartyl-tRNA synthetase signature 384 398 7.2E-20 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 209 7.2E-20 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 PRINTS PR01042 Aspartyl-tRNA synthetase signature 179 191 7.2E-20 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS27180 6f20279678b67edea09aea9c27003ccb 429 Gene3D G3DSA:3.30.930.10 106 429 7.1E-98 T 11-11-2016 Gferi_RS24805 c271ccda2a904973ce326bb90975ae32 258 SUPERFAMILY SSF52540 6 248 6.85E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24805 c271ccda2a904973ce326bb90975ae32 258 Pfam PF00005 ABC transporter 27 178 1.8E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS24805 c271ccda2a904973ce326bb90975ae32 258 Gene3D G3DSA:3.40.50.300 5 251 9.8E-78 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24805 c271ccda2a904973ce326bb90975ae32 258 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS24805 c271ccda2a904973ce326bb90975ae32 258 SMART SM00382 35 227 3.7E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08740 01574952ed035026b4b52e66337a56d7 293 Gene3D G3DSA:3.40.50.10490 102 261 1.1E-19 T 11-11-2016 Gferi_RS08740 01574952ed035026b4b52e66337a56d7 293 Pfam PF01418 Helix-turn-helix domain, rpiR family 4 71 8.8E-13 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Gferi_RS08740 01574952ed035026b4b52e66337a56d7 293 SUPERFAMILY SSF53697 101 273 6.01E-19 T 11-11-2016 Gferi_RS08740 01574952ed035026b4b52e66337a56d7 293 Pfam PF01380 SIS domain 127 251 3.5E-12 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS08740 01574952ed035026b4b52e66337a56d7 293 SUPERFAMILY SSF46689 4 77 1.52E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08740 01574952ed035026b4b52e66337a56d7 293 Gene3D G3DSA:1.10.10.10 4 76 3.3E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13305 cc665492df9b7cd37d398a4aeedbdd84 265 SUPERFAMILY SSF110849 10 102 8.11E-29 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS13305 cc665492df9b7cd37d398a4aeedbdd84 265 SUPERFAMILY SSF109709 94 200 5.75E-34 T 11-11-2016 Gferi_RS13305 cc665492df9b7cd37d398a4aeedbdd84 265 SMART SM00470 10 100 5.6E-30 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS13305 cc665492df9b7cd37d398a4aeedbdd84 265 Gene3D G3DSA:3.90.1530.10 4 106 3.6E-39 T 11-11-2016 Gferi_RS13305 cc665492df9b7cd37d398a4aeedbdd84 265 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 6 185 1.2E-52 T 11-11-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Gferi_RS13305 cc665492df9b7cd37d398a4aeedbdd84 265 Pfam PF02195 ParB-like nuclease domain 11 99 2.2E-24 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS13305 cc665492df9b7cd37d398a4aeedbdd84 265 TIGRFAM TIGR04285 nucleoid_noc: nucleoid occlusion protein 9 264 2.4E-103 T 11-11-2016 IPR023705 Nucleoid occlusion protein Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 103 301 1.3E-23 T 11-11-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 208 219 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 SUPERFAMILY SSF54862 149 229 1.94E-15 T 11-11-2016 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 19 79 8.4E-15 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 Gene3D G3DSA:3.30.413.10 230 301 8.0E-35 T 11-11-2016 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 Gene3D G3DSA:3.30.413.10 105 160 8.0E-35 T 11-11-2016 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 TIGRFAM TIGR02912 sulfite_red_C: sulfite reductase, subunit C 2 318 3.7E-156 T 11-11-2016 IPR014261 Sulphite reductase, subunit C Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 Gene3D G3DSA:3.30.70.20 161 228 9.4E-13 T 11-11-2016 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 Pfam PF12838 4Fe-4S dicluster domain 175 222 2.5E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 SUPERFAMILY SSF55124 16 80 1.8E-16 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 147 163 - T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 SUPERFAMILY SSF56014 229 305 1.29E-32 T 11-11-2016 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 SUPERFAMILY SSF56014 105 169 1.29E-32 T 11-11-2016 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 PRINTS PR00397 Sirohaem Fe-binding site signature 106 124 8.4E-7 T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS11900 b131ce15ebe9c3b12846300cdcc15948 335 PRINTS PR00397 Sirohaem Fe-binding site signature 147 165 8.4E-7 T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 SMART SM00257 16 60 6.2E-18 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 SMART SM00257 132 176 3.6E-13 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 SMART SM00257 73 117 3.4E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 SUPERFAMILY SSF54106 15 60 1.96E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 SUPERFAMILY SSF54106 132 177 1.57E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 Pfam PF03734 L,D-transpeptidase catalytic domain 183 288 5.9E-25 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 SUPERFAMILY SSF141523 180 288 3.14E-37 T 11-11-2016 Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 Pfam PF01476 LysM domain 133 176 8.2E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 Pfam PF01476 LysM domain 17 60 5.5E-17 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 Pfam PF01476 LysM domain 74 117 5.2E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 SUPERFAMILY SSF54106 73 117 2.62E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 Gene3D G3DSA:3.10.350.10 15 61 5.8E-17 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 Gene3D G3DSA:3.10.350.10 72 117 6.1E-17 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 Gene3D G3DSA:3.10.350.10 132 177 2.1E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS22960 08c8a925942700523617399eb87bbaab 289 Gene3D G3DSA:2.40.440.10 180 288 1.7E-40 T 11-11-2016 Gferi_RS10470 b7dc3caa9dfc3b765511493a05e5cc0a 278 Gene3D G3DSA:3.40.50.1820 24 258 2.6E-33 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS10470 b7dc3caa9dfc3b765511493a05e5cc0a 278 Pfam PF07859 alpha/beta hydrolase fold 60 153 3.0E-11 T 11-11-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 Gferi_RS10470 b7dc3caa9dfc3b765511493a05e5cc0a 278 SUPERFAMILY SSF53474 7 275 4.5E-34 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS18540 581daacc81dda16d3492ab883f5d1226 530 Gene3D G3DSA:3.90.76.10 55 199 5.6E-36 T 11-11-2016 Gferi_RS18540 581daacc81dda16d3492ab883f5d1226 530 Gene3D G3DSA:3.10.105.10 301 496 1.6E-51 T 11-11-2016 Gferi_RS18540 581daacc81dda16d3492ab883f5d1226 530 SUPERFAMILY SSF53850 49 527 1.09E-114 T 11-11-2016 Gferi_RS18540 581daacc81dda16d3492ab883f5d1226 530 Gene3D G3DSA:3.40.190.10 200 300 1.3E-25 T 11-11-2016 Gferi_RS18540 581daacc81dda16d3492ab883f5d1226 530 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 442 1.8E-85 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS18540 581daacc81dda16d3492ab883f5d1226 530 PIRSF PIRSF002741 1 530 4.5E-86 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Pfam PF00623 RNA polymerase Rpb1, domain 2 379 474 1.9E-28 T 11-11-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Pfam PF00623 RNA polymerase Rpb1, domain 2 333 377 4.8E-8 T 11-11-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Gene3D G3DSA:2.40.50.100 942 997 1.0E-15 T 11-11-2016 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Pfam PF05000 RNA polymerase Rpb1, domain 4 664 727 5.0E-14 T 11-11-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 SUPERFAMILY SSF64484 5 1152 0.0 T 11-11-2016 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Gene3D G3DSA:2.40.40.20 406 477 9.4E-37 T 11-11-2016 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Gene3D G3DSA:2.40.40.20 338 365 9.4E-37 T 11-11-2016 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Pfam PF04997 RNA polymerase Rpb1, domain 1 5 331 2.3E-90 T 11-11-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 5 1161 10.341 T 11-11-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 SMART SM00663 224 503 3.2E-184 T 11-11-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 3 639 32.479 T 11-11-2016 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 9 1152 0.0 T 11-11-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Pfam PF04983 RNA polymerase Rpb1, domain 3 478 635 7.4E-28 T 11-11-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Pfam PF04998 RNA polymerase Rpb1, domain 5 742 962 1.1E-51 T 11-11-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17360 9d4fdf79e332de118913d0190bcf9878 1162 Pfam PF04998 RNA polymerase Rpb1, domain 5 955 1100 6.0E-18 T 11-11-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS11635 8d1ea37f6d7eae4398c16db22daabd0c 281 Pfam PF01841 Transglutaminase-like superfamily 144 254 2.8E-22 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS11635 8d1ea37f6d7eae4398c16db22daabd0c 281 SUPERFAMILY SSF54001 130 262 4.63E-30 T 11-11-2016 Gferi_RS11635 8d1ea37f6d7eae4398c16db22daabd0c 281 SMART SM00460 195 257 3.1E-13 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS11635 8d1ea37f6d7eae4398c16db22daabd0c 281 Gene3D G3DSA:3.90.260.10 196 265 1.5E-6 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS17175 696997d08deee12b2cc869bef767003c 303 Gene3D G3DSA:3.40.1390.20 2 130 4.0E-33 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS17175 696997d08deee12b2cc869bef767003c 303 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 2 303 36.621 T 11-11-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Gferi_RS17175 696997d08deee12b2cc869bef767003c 303 SUPERFAMILY SSF53795 133 296 1.04E-38 T 11-11-2016 Gferi_RS17175 696997d08deee12b2cc869bef767003c 303 SUPERFAMILY SSF75138 2 127 3.4E-28 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS17175 696997d08deee12b2cc869bef767003c 303 Pfam PF02603 HPr Serine kinase N terminus 3 125 1.4E-32 T 11-11-2016 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Gferi_RS17175 696997d08deee12b2cc869bef767003c 303 Gene3D G3DSA:3.40.50.300 132 300 9.1E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17175 696997d08deee12b2cc869bef767003c 303 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 3 299 3.1E-106 T 11-11-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Gferi_RS17175 696997d08deee12b2cc869bef767003c 303 Pfam PF07475 HPr Serine kinase C-terminal domain 128 296 1.5E-68 T 11-11-2016 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Gferi_RS14095 d85e023d70c4107818b779a28f1dc923 307 Pfam PF00005 ABC transporter 19 157 2.6E-24 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14095 d85e023d70c4107818b779a28f1dc923 307 SMART SM00382 28 206 4.7E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14095 d85e023d70c4107818b779a28f1dc923 307 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS14095 d85e023d70c4107818b779a28f1dc923 307 Gene3D G3DSA:3.40.50.300 2 219 8.6E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14095 d85e023d70c4107818b779a28f1dc923 307 SUPERFAMILY SSF52540 3 218 8.15E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07965 060579e81ec05d80559c67474f7b7f2f 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 221 1.1E-18 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07965 060579e81ec05d80559c67474f7b7f2f 225 Gene3D G3DSA:1.10.10.10 125 222 4.4E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07965 060579e81ec05d80559c67474f7b7f2f 225 SUPERFAMILY SSF52172 2 167 2.13E-44 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS07965 060579e81ec05d80559c67474f7b7f2f 225 SMART SM00448 2 113 1.2E-44 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07965 060579e81ec05d80559c67474f7b7f2f 225 Gene3D G3DSA:3.40.50.2300 2 124 2.8E-42 T 11-11-2016 Gferi_RS07965 060579e81ec05d80559c67474f7b7f2f 225 SMART SM00862 148 221 4.0E-17 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07965 060579e81ec05d80559c67474f7b7f2f 225 Pfam PF00072 Response regulator receiver domain 4 113 2.0E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 Gene3D G3DSA:2.30.40.10 2 61 2.9E-20 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 Gene3D G3DSA:2.30.40.10 497 540 2.9E-20 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 Gene3D G3DSA:3.20.20.140 200 489 6.2E-29 T 11-11-2016 Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 Gene3D G3DSA:3.20.20.140 62 81 6.2E-29 T 11-11-2016 Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 Pfam PF07969 Amidohydrolase family 50 538 7.0E-107 T 11-11-2016 IPR013108 Amidohydrolase 3 Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 SUPERFAMILY SSF51338 1 60 1.65E-20 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 SUPERFAMILY SSF51338 497 539 1.65E-20 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 SUPERFAMILY SSF51556 194 498 3.21E-36 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS17700 2b0ee4004e595c231af5c525f7c5a082 551 SUPERFAMILY SSF51556 59 118 3.21E-36 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 SUPERFAMILY SSF56003 311 905 4.06E-143 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:3.30.365.10 532 566 4.5E-52 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:3.30.365.10 745 905 4.5E-52 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:3.10.20.30 5 76 6.0E-22 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Pfam PF01799 [2Fe-2S] binding domain 75 149 7.6E-27 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:3.30.365.10 296 362 1.3E-31 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:3.30.365.10 458 531 1.3E-31 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 SUPERFAMILY SSF54292 5 89 3.93E-19 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 SUPERFAMILY SSF47741 81 190 3.01E-35 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 SUPERFAMILY SSF54665 166 329 1.22E-41 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 202 307 1.2E-22 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 324 845 1.6E-128 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:3.30.365.10 628 736 3.6E-19 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 60 2.6E-6 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:1.10.150.120 77 178 1.9E-35 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 SMART SM01008 190 307 3.9E-38 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:3.90.1170.50 179 295 5.9E-37 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 Gene3D G3DSA:3.30.365.10 364 455 1.0E-17 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS19170 aba7e55dd6a508f1c5119eabf9cf1289 910 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 528 551 5.6 T 11-11-2016 IPR001330 PFTB repeat GO:0003824 Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 186 209 0.74 T 11-11-2016 IPR001330 PFTB repeat GO:0003824 Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Pfam PF00432 Prenyltransferase and squalene oxidase repeat 239 277 0.0044 T 11-11-2016 IPR001330 PFTB repeat GO:0003824 Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Pfam PF07833 Copper amine oxidase N-terminal domain 996 1080 2.2E-20 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Pfam PF07833 Copper amine oxidase N-terminal domain 968 1025 9.7E-16 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 SUPERFAMILY SSF55383 999 1071 5.62E-16 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 SUPERFAMILY SSF48239 400 497 2.16E-16 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 SUPERFAMILY SSF48239 169 308 2.16E-16 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Gene3D G3DSA:3.30.457.10 969 1007 1.2E-14 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Gene3D G3DSA:3.30.457.10 1008 1069 9.3E-18 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Pfam PF14478 Domain of unknown function (DUF4430) 678 733 5.3E-7 T 11-11-2016 IPR027954 Domain of unknown function DUF4430 Reactome: R-HSA-196741 Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Gene3D G3DSA:1.50.10.20 132 308 8.7E-18 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 Gene3D G3DSA:1.50.10.20 411 616 4.5E-14 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS10240 cb75fb9162ac1018c301652d20cce382 1082 SUPERFAMILY SSF48239 473 615 8.3E-13 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 SUPERFAMILY SSF55326 641 820 1.13E-39 T 11-11-2016 Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 Pfam PF02769 AIR synthase related protein, C-terminal domain 442 594 6.2E-20 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 Gene3D G3DSA:3.30.1330.10 222 237 3.2E-53 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 Gene3D G3DSA:3.30.1330.10 292 433 3.2E-53 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 SUPERFAMILY SSF56042 439 665 2.69E-36 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 996 1259 1.1E-91 T 11-11-2016 Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 SUPERFAMILY SSF55326 301 434 4.19E-31 T 11-11-2016 Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 SUPERFAMILY SSF55326 207 233 4.19E-31 T 11-11-2016 Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 Gene3D G3DSA:3.30.1330.10 656 817 1.0E-30 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 Gene3D G3DSA:3.40.50.880 996 1238 4.5E-16 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 SUPERFAMILY SSF52317 993 1259 4.43E-73 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 SUPERFAMILY SSF56042 822 970 1.48E-17 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 SMART SM01211 996 1259 6.1E-122 T 11-11-2016 Gferi_RS10025 b125f99d9171f6a661f5ed213c68376c 1260 TIGRFAM TIGR01857 FGAM-synthase: phosphoribosylformylglycinamidine synthase 6 1259 0.0 T 11-11-2016 IPR010141 Phosphoribosylformylglycinamidine synthase, FGAM Gferi_RS07785 a53113d2561fc286a98177c93274db5d 439 SUPERFAMILY SSF46785 4 71 8.89E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07785 a53113d2561fc286a98177c93274db5d 439 Gene3D G3DSA:3.40.640.10 108 331 5.1E-63 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS07785 a53113d2561fc286a98177c93274db5d 439 SUPERFAMILY SSF53383 63 437 1.66E-74 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS07785 a53113d2561fc286a98177c93274db5d 439 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 67 4.9E-13 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS07785 a53113d2561fc286a98177c93274db5d 439 Gene3D G3DSA:1.10.10.10 3 68 5.8E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07785 a53113d2561fc286a98177c93274db5d 439 SMART SM00345 8 67 1.6E-13 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS07785 a53113d2561fc286a98177c93274db5d 439 Pfam PF00155 Aminotransferase class I and II 110 434 1.7E-32 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS12255 97755c8c6b2ca3a3cdd0216e6598c4e1 203 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 183 22.117 T 11-11-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Gferi_RS12255 97755c8c6b2ca3a3cdd0216e6598c4e1 203 SUPERFAMILY SSF50715 10 182 6.8E-41 T 11-11-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS12255 97755c8c6b2ca3a3cdd0216e6598c4e1 203 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 22 93 5.0E-8 T 11-11-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Gferi_RS12255 97755c8c6b2ca3a3cdd0216e6598c4e1 203 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 182 4.9E-37 T 11-11-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Gferi_RS12255 97755c8c6b2ca3a3cdd0216e6598c4e1 203 Gene3D G3DSA:2.170.120.20 98 188 2.3E-17 T 11-11-2016 IPR020057 Ribosomal protein L25, beta domain Gferi_RS12255 97755c8c6b2ca3a3cdd0216e6598c4e1 203 Pfam PF01386 Ribosomal L25p family 7 92 2.5E-18 T 11-11-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Gferi_RS12255 97755c8c6b2ca3a3cdd0216e6598c4e1 203 Gene3D G3DSA:2.40.240.10 6 94 2.1E-20 T 11-11-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS12255 97755c8c6b2ca3a3cdd0216e6598c4e1 203 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 100 183 3.5E-17 T 11-11-2016 IPR020057 Ribosomal protein L25, beta domain Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 SUPERFAMILY SSF55594 1 87 1.1E-27 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.9E-27 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 Gene3D G3DSA:3.30.1340.10 1 87 5.7E-31 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-11-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.9E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.9E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.9E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS12590 f431a4ba84fadf7951c7c69230e90e1b 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 1.0E-28 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 Gene3D G3DSA:3.40.440.10 195 264 1.8E-72 T 11-11-2016 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 Gene3D G3DSA:3.40.440.10 1 93 1.8E-72 T 11-11-2016 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 SUPERFAMILY SSF52540 1 427 1.06E-174 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 Pfam PF00709 Adenylosuccinate synthetase 4 421 1.2E-183 T 11-11-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 SMART SM00788 3 422 1.7E-283 T 11-11-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 Gene3D G3DSA:1.10.300.10 100 194 5.8E-35 T 11-11-2016 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 11-11-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 428 201.449 T 11-11-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 131 142 - T 11-11-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 Gene3D G3DSA:3.90.170.10 265 423 2.1E-71 T 11-11-2016 Gferi_RS13720 ec60fe38c613610e974373e51753f9ec 428 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 424 8.2E-175 T 11-11-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 2.4E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 477 2.4E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 2.4E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 2.4E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 SMART SM00388 251 322 1.6E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 SMART SM00387 368 480 8.8E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 Gene3D G3DSA:3.30.565.10 328 477 1.8E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 SUPERFAMILY SSF47384 240 322 2.75E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 369 477 5.9E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 Gene3D G3DSA:1.10.287.130 246 318 2.6E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 Pfam PF00512 His Kinase A (phospho-acceptor) domain 252 322 2.7E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08840 fbf0e6bee96b9a1594d739e83859cd30 511 SUPERFAMILY SSF55874 312 481 3.14E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03970 20e4c95af3df461c16929d2cd31392db 303 Gene3D G3DSA:3.40.50.10750 112 272 2.2E-43 T 11-11-2016 Gferi_RS03970 20e4c95af3df461c16929d2cd31392db 303 Pfam PF01515 Phosphate acetyl/butaryl transferase 77 294 6.1E-42 T 11-11-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS03970 20e4c95af3df461c16929d2cd31392db 303 PIRSF PIRSF000428 1 303 2.8E-85 T 11-11-2016 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS03970 20e4c95af3df461c16929d2cd31392db 303 SUPERFAMILY SSF53659 5 299 7.2E-60 T 11-11-2016 Gferi_RS24200 c820d83438a47ce6cff941b1fa27813f 246 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 246 38.694 T 11-11-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS24200 c820d83438a47ce6cff941b1fa27813f 246 Pfam PF02654 Cobalamin-5-phosphate synthase 8 235 5.3E-55 T 11-11-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS24200 c820d83438a47ce6cff941b1fa27813f 246 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 3 235 1.1E-41 T 11-11-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS00285 2edf4ae1e0a3e870763ca79a1614137a 133 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 3 129 2.2E-42 T 11-11-2016 IPR011605 NusB antitermination factor GO:0006353 Gferi_RS00285 2edf4ae1e0a3e870763ca79a1614137a 133 Gene3D G3DSA:1.10.940.10 1 129 1.0E-45 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Gferi_RS00285 2edf4ae1e0a3e870763ca79a1614137a 133 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 1 133 22.251 T 11-11-2016 IPR011605 NusB antitermination factor GO:0006353 Gferi_RS00285 2edf4ae1e0a3e870763ca79a1614137a 133 SUPERFAMILY SSF48013 2 129 7.85E-39 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Gferi_RS00285 2edf4ae1e0a3e870763ca79a1614137a 133 Pfam PF01029 NusB family 6 129 3.5E-40 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Gferi_RS19085 406b6c3f07371f09dd017278383745d1 169 SUPERFAMILY SSF55729 1 140 6.45E-25 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19085 406b6c3f07371f09dd017278383745d1 169 Gene3D G3DSA:3.40.630.30 1 140 5.6E-28 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19085 406b6c3f07371f09dd017278383745d1 169 Pfam PF00583 Acetyltransferase (GNAT) family 63 136 4.5E-13 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS04285 ad3e1c815285b5b1a411ebd26ee146f3 502 SUPERFAMILY SSF161070 5 471 7.59E-110 T 11-11-2016 Gferi_RS04285 ad3e1c815285b5b1a411ebd26ee146f3 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 3.8E-13 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS04285 ad3e1c815285b5b1a411ebd26ee146f3 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 307 326 3.8E-13 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS04285 ad3e1c815285b5b1a411ebd26ee146f3 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 87 113 3.8E-13 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS04285 ad3e1c815285b5b1a411ebd26ee146f3 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 3.8E-13 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS04285 ad3e1c815285b5b1a411ebd26ee146f3 502 Pfam PF00209 Sodium:neurotransmitter symporter family 5 118 4.3E-23 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS04285 ad3e1c815285b5b1a411ebd26ee146f3 502 Pfam PF00209 Sodium:neurotransmitter symporter family 152 463 3.0E-34 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00585 ad3e1c815285b5b1a411ebd26ee146f3 502 SUPERFAMILY SSF161070 5 471 7.59E-110 T 11-11-2016 Gferi_RS00585 ad3e1c815285b5b1a411ebd26ee146f3 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 3.8E-13 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00585 ad3e1c815285b5b1a411ebd26ee146f3 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 307 326 3.8E-13 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00585 ad3e1c815285b5b1a411ebd26ee146f3 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 87 113 3.8E-13 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00585 ad3e1c815285b5b1a411ebd26ee146f3 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 3.8E-13 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00585 ad3e1c815285b5b1a411ebd26ee146f3 502 Pfam PF00209 Sodium:neurotransmitter symporter family 5 118 4.3E-23 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00585 ad3e1c815285b5b1a411ebd26ee146f3 502 Pfam PF00209 Sodium:neurotransmitter symporter family 152 463 3.0E-34 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS23495 863a7d3dd9d628627aed3fc83468e540 220 TIGRFAM TIGR02681 phage_pRha: phage regulatory protein, Rha family 16 115 4.4E-36 T 11-11-2016 IPR014054 Bacteriophage regulatory protein, Rha family Gferi_RS23495 863a7d3dd9d628627aed3fc83468e540 220 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 22 112 2.5E-30 T 11-11-2016 IPR014054 Bacteriophage regulatory protein, Rha family Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 523 2.6E-99 T 11-11-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 Gene3D G3DSA:1.10.560.10 366 517 2.3E-43 T 11-11-2016 IPR027413 GroEL-like equatorial domain Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 Gene3D G3DSA:1.10.560.10 3 194 9.5E-50 T 11-11-2016 IPR027413 GroEL-like equatorial domain Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 PRINTS PR00298 60kDa chaperonin signature 266 289 1.9E-72 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 PRINTS PR00298 60kDa chaperonin signature 26 52 1.9E-72 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 PRINTS PR00298 60kDa chaperonin signature 348 373 1.9E-72 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 PRINTS PR00298 60kDa chaperonin signature 82 109 1.9E-72 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 PRINTS PR00298 60kDa chaperonin signature 396 417 1.9E-72 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 Gene3D G3DSA:3.50.7.10 195 365 2.0E-97 T 11-11-2016 IPR027409 GroEL-like apical domain Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 SUPERFAMILY SSF48592 6 133 3.59E-80 T 11-11-2016 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 SUPERFAMILY SSF48592 404 520 3.59E-80 T 11-11-2016 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 SUPERFAMILY SSF52029 182 374 6.73E-85 T 11-11-2016 IPR027409 GroEL-like apical domain Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 Hamap MF_00600 60 kDa chaperonin [groL]. 1 541 42.085 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 525 2.7E-257 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 Gferi_RS10275 9a74fec2e0b7b6ef6b6628d2d1ca4802 542 SUPERFAMILY SSF54849 137 205 3.43E-26 T 11-11-2016 Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 SUPERFAMILY SSF55021 263 348 1.43E-7 T 11-11-2016 Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 Pfam PF00696 Amino acid kinase family 2 235 5.4E-50 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 PIRSF PIRSF000726 59 405 4.8E-87 T 11-11-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 SUPERFAMILY SSF53633 3 246 6.94E-69 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 SUPERFAMILY SSF55021 337 404 2.7E-14 T 11-11-2016 Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 Pfam PF13840 ACT domain 338 400 8.5E-19 T 11-11-2016 IPR027795 GATS-like ACT domain Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 11-11-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 PRINTS PR00474 Glutamate 5-kinase family signature 121 142 7.0E-5 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 PRINTS PR00474 Glutamate 5-kinase family signature 157 184 7.0E-5 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 7.0E-5 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 Gene3D G3DSA:3.40.1160.10 1 247 1.1E-64 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00665 ffa5163c6a47c44f54906cde0c0bf745 405 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 65 403 4.4E-92 T 11-11-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 46 290 2.0E-78 T 11-11-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 Pfam PF02810 SEC-C motif 7 24 2.8E-9 T 11-11-2016 IPR004027 SEC-C motif Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 SUPERFAMILY SSF103642 6 26 4.58E-7 T 11-11-2016 Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 Gene3D G3DSA:3.90.230.10 46 289 5.2E-80 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 PRINTS PR00599 Methionine aminopeptidase-1 signature 202 214 9.1E-21 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 PRINTS PR00599 Methionine aminopeptidase-1 signature 233 245 9.1E-21 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 PRINTS PR00599 Methionine aminopeptidase-1 signature 109 122 9.1E-21 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 PRINTS PR00599 Methionine aminopeptidase-1 signature 132 148 9.1E-21 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 Pfam PF00557 Metallopeptidase family M24 54 282 8.8E-46 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 SUPERFAMILY SSF55920 43 289 9.81E-73 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 Hamap MF_01974 Methionine aminopeptidase [map]. 44 291 34.759 T 11-11-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 Gferi_RS19025 c368e68c4b8bf15776991903ec4158ad 291 Gene3D G3DSA:3.10.450.50 3 25 6.7E-8 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS04530 16651440baf11e53ff59dfb23f6e282f 87 SUPERFAMILY SSF55594 2 87 5.23E-29 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04530 16651440baf11e53ff59dfb23f6e282f 87 PRINTS PR00107 Phosphocarrier protein signature 52 69 9.0E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04530 16651440baf11e53ff59dfb23f6e282f 87 PRINTS PR00107 Phosphocarrier protein signature 37 52 9.0E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04530 16651440baf11e53ff59dfb23f6e282f 87 PRINTS PR00107 Phosphocarrier protein signature 12 28 9.0E-19 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04530 16651440baf11e53ff59dfb23f6e282f 87 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 12 19 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS04530 16651440baf11e53ff59dfb23f6e282f 87 Pfam PF00381 PTS HPr component phosphorylation site 2 81 6.2E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04530 16651440baf11e53ff59dfb23f6e282f 87 Gene3D G3DSA:3.30.1340.10 2 87 1.1E-31 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04530 16651440baf11e53ff59dfb23f6e282f 87 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 2 81 1.7E-29 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS02175 edd54c8629ca2522869806d185a01abb 240 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 202 1.1E-15 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS02175 edd54c8629ca2522869806d185a01abb 240 Gene3D G3DSA:3.40.50.1000 2 217 2.4E-24 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS02175 edd54c8629ca2522869806d185a01abb 240 SUPERFAMILY SSF56784 2 229 8.41E-25 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS12550 57d80092572a676d749231b096733203 234 Pfam PF00005 ABC transporter 25 167 1.1E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS12550 57d80092572a676d749231b096733203 234 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS12550 57d80092572a676d749231b096733203 234 SMART SM00382 33 216 1.1E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS12550 57d80092572a676d749231b096733203 234 Gene3D G3DSA:3.40.50.300 2 218 5.4E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12550 57d80092572a676d749231b096733203 234 SUPERFAMILY SSF52540 4 221 1.02E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02585 23bd7addfbedc2c5731b92f5294e2603 520 Pfam PF14287 Domain of unknown function (DUF4368) 465 520 4.9E-13 T 11-11-2016 IPR025378 Domain of unknown function DUF4368 Gferi_RS02585 23bd7addfbedc2c5731b92f5294e2603 520 Gene3D G3DSA:3.40.50.1390 3 138 1.9E-23 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS02585 23bd7addfbedc2c5731b92f5294e2603 520 SUPERFAMILY SSF53041 3 158 9.81E-30 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS02585 23bd7addfbedc2c5731b92f5294e2603 520 Pfam PF00239 Resolvase, N terminal domain 4 157 6.3E-25 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS02585 23bd7addfbedc2c5731b92f5294e2603 520 Pfam PF13408 Recombinase zinc beta ribbon domain 316 374 4.1E-10 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS02585 23bd7addfbedc2c5731b92f5294e2603 520 Pfam PF07508 Recombinase 181 305 1.0E-26 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS02585 23bd7addfbedc2c5731b92f5294e2603 520 SMART SM00857 4 158 1.2E-35 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 SUPERFAMILY SSF48029 8 102 2.88E-22 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 Pfam PF14841 FliG middle domain 118 191 2.0E-31 T 11-11-2016 IPR032779 Flagellar motor switch protein FliG, middle domain Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 Gene3D G3DSA:1.10.220.30 75 193 1.9E-33 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 Gene3D G3DSA:1.10.220.30 197 335 8.5E-47 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 Pfam PF01706 FliG C-terminal domain 219 326 9.7E-45 T 11-11-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 116 139 2.0E-79 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 228 248 2.0E-79 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 250 270 2.0E-79 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 36 62 2.0E-79 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 197 222 2.0E-79 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 7 23 2.0E-79 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 PRINTS PR00954 Flagellar motor switch protein FliG signature 274 300 2.0E-79 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 7 336 4.3E-142 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 PIRSF PIRSF003161 1 336 9.6E-124 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 SUPERFAMILY SSF48029 116 327 4.45E-70 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 Pfam PF14842 FliG N-terminal domain 7 109 1.8E-38 T 11-11-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Gferi_RS00980 fb02e750c71faeb458d9339d96c656ce 336 Gene3D G3DSA:1.10.220.30 11 70 1.4E-17 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical Gferi_RS18005 bd726409d64c72b3de5473f9d45c82ff 368 SUPERFAMILY SSF55920 140 366 1.44E-50 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS18005 bd726409d64c72b3de5473f9d45c82ff 368 Pfam PF00557 Metallopeptidase family M24 148 352 1.4E-35 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS18005 bd726409d64c72b3de5473f9d45c82ff 368 Gene3D G3DSA:3.90.230.10 140 364 1.7E-48 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS18005 bd726409d64c72b3de5473f9d45c82ff 368 Pfam PF01321 Creatinase/Prolidase N-terminal domain 8 140 4.4E-15 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS18005 bd726409d64c72b3de5473f9d45c82ff 368 Gene3D G3DSA:3.40.350.10 5 138 4.0E-14 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS18005 bd726409d64c72b3de5473f9d45c82ff 368 SUPERFAMILY SSF53092 4 138 7.85E-18 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 Gene3D G3DSA:3.40.50.720 7 266 5.4E-74 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 202 455 2.9E-58 T 11-11-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 PRINTS PR00084 Mannitol dehydrogenase signature 203 216 3.5E-6 T 11-11-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 PRINTS PR00084 Mannitol dehydrogenase signature 17 27 3.5E-6 T 11-11-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 PRINTS PR00084 Mannitol dehydrogenase signature 233 248 3.5E-6 T 11-11-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 Hamap MF_00670 Altronate oxidoreductase [uxaB]. 1 481 54.795 T 11-11-2016 IPR023668 Altronate oxidoreductase GO:0009026|GO:0055114 KEGG: 00040+1.1.1.58 Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 Gene3D G3DSA:1.10.1040.10 270 481 3.0E-63 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 16 170 8.9E-23 T 11-11-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 SUPERFAMILY SSF51735 8 264 7.48E-71 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02560 2be2efa2fbc045c79caac2754eeb6a48 482 SUPERFAMILY SSF48179 271 480 4.08E-47 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS07420 2e64306c890734c6084f787228f1ebcd 371 Pfam PF01145 SPFH domain / Band 7 family 141 312 3.4E-21 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS07420 2e64306c890734c6084f787228f1ebcd 371 SMART SM00244 140 296 5.0E-16 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS07420 2e64306c890734c6084f787228f1ebcd 371 PRINTS PR00721 Stomatin signature 248 271 6.9E-10 T 11-11-2016 IPR001972 Stomatin family GO:0016020 Gferi_RS07420 2e64306c890734c6084f787228f1ebcd 371 PRINTS PR00721 Stomatin signature 272 290 6.9E-10 T 11-11-2016 IPR001972 Stomatin family GO:0016020 Gferi_RS07420 2e64306c890734c6084f787228f1ebcd 371 PRINTS PR00721 Stomatin signature 316 339 6.9E-10 T 11-11-2016 IPR001972 Stomatin family GO:0016020 Gferi_RS07420 2e64306c890734c6084f787228f1ebcd 371 PRINTS PR00721 Stomatin signature 193 214 6.9E-10 T 11-11-2016 IPR001972 Stomatin family GO:0016020 Gferi_RS07420 2e64306c890734c6084f787228f1ebcd 371 PRINTS PR00721 Stomatin signature 228 245 6.9E-10 T 11-11-2016 IPR001972 Stomatin family GO:0016020 Gferi_RS07420 2e64306c890734c6084f787228f1ebcd 371 SUPERFAMILY SSF117892 175 301 5.23E-25 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS09225 83bc1808058713a4e93fc9b221579e25 173 Pfam PF02417 Chromate transporter 5 170 5.9E-45 T 11-11-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 Gferi_RS15460 a0e417aff1013fefaac5827c6a4bd574 406 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 213 372 1.6E-33 T 11-11-2016 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 Gferi_RS15460 a0e417aff1013fefaac5827c6a4bd574 406 SUPERFAMILY SSF48179 216 400 7.48E-25 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS15460 a0e417aff1013fefaac5827c6a4bd574 406 Gene3D G3DSA:1.10.1040.10 223 389 3.5E-38 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS15460 a0e417aff1013fefaac5827c6a4bd574 406 SUPERFAMILY SSF51735 11 125 1.91E-11 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS15460 a0e417aff1013fefaac5827c6a4bd574 406 Gene3D G3DSA:3.40.50.720 8 154 6.3E-17 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS15460 a0e417aff1013fefaac5827c6a4bd574 406 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 12 119 7.8E-6 T 11-11-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS05725 be57055f9615ee75dc2fa53db83a38e7 112 Gene3D G3DSA:3.40.1390.20 2 107 1.6E-10 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS05725 be57055f9615ee75dc2fa53db83a38e7 112 SUPERFAMILY SSF75138 2 108 1.96E-16 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 3 441 66.699 T 11-11-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 4 439 1.8E-161 T 11-11-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 Pfam PF04055 Radical SAM superfamily 152 322 1.5E-28 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 150 170 - T 11-11-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 SMART SM00729 146 364 3.2E-56 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 439 2.7E-138 T 11-11-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 Gene3D G3DSA:3.80.30.20 144 375 1.2E-76 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 Pfam PF00919 Uncharacterized protein family UPF0004 4 103 6.8E-29 T 11-11-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 SUPERFAMILY SSF102114 134 372 1.96E-59 T 11-11-2016 Gferi_RS00645 c0260ad74480d35ea812a33e1d660c85 447 Gene3D G3DSA:2.40.50.140 379 444 6.1E-22 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 Pfam PF00085 Thioredoxin 312 408 1.1E-8 T 11-11-2016 IPR013766 Thioredoxin domain GO:0045454 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 Gene3D G3DSA:3.50.50.60 125 244 1.4E-20 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 SUPERFAMILY SSF51905 6 311 1.5E-46 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 290 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 63 73 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 146 170 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 200 216 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 42 57 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 131 143 2.6E-57 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 298 1.3E-41 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 Gene3D G3DSA:3.50.50.60 6 122 1.0E-41 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 Gene3D G3DSA:3.50.50.60 245 310 1.0E-41 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.5E-31 T 11-11-2016 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 1.5E-31 T 11-11-2016 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.5E-31 T 11-11-2016 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 1.5E-31 T 11-11-2016 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 1.5E-31 T 11-11-2016 Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 SUPERFAMILY SSF52833 315 408 1.73E-12 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS07350 3f668c696d5aa27d7df3128e83a11fe1 412 Gene3D G3DSA:3.40.30.10 312 408 9.9E-14 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS00805 e86d81ff16b8652cfd649b6b5a6faf54 152 Pfam PF02618 YceG-like family 83 145 1.8E-8 T 11-11-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like Gferi_RS14315 600c010b56ddb4bbc035f5edae59df05 226 SUPERFAMILY SSF46548 142 219 5.49E-5 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS14315 600c010b56ddb4bbc035f5edae59df05 226 Gene3D G3DSA:3.30.70.20 163 219 5.5E-6 T 11-11-2016 Gferi_RS06575 96a69df25d1f1c4102d2cce7078b9716 339 Pfam PF00591 Glycosyl transferase family, a/b domain 74 319 9.7E-97 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS06575 96a69df25d1f1c4102d2cce7078b9716 339 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 65 8.0E-20 T 11-11-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS06575 96a69df25d1f1c4102d2cce7078b9716 339 Gene3D G3DSA:3.40.1030.10 75 335 5.4E-109 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS06575 96a69df25d1f1c4102d2cce7078b9716 339 SUPERFAMILY SSF47648 4 68 9.81E-19 T 11-11-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS06575 96a69df25d1f1c4102d2cce7078b9716 339 Gene3D G3DSA:1.20.970.10 5 69 6.4E-28 T 11-11-2016 Gferi_RS06575 96a69df25d1f1c4102d2cce7078b9716 339 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 4 333 38.289 T 11-11-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Gferi_RS06575 96a69df25d1f1c4102d2cce7078b9716 339 SUPERFAMILY SSF52418 73 336 1.18E-94 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS06575 96a69df25d1f1c4102d2cce7078b9716 339 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 7 332 7.8E-132 T 11-11-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 Gene3D G3DSA:1.10.260.40 3 54 1.7E-27 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 SMART SM00354 2 72 1.5E-35 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 4.6E-7 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 4.6E-7 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 Gene3D G3DSA:3.40.50.2300 174 312 1.7E-49 T 11-11-2016 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 SUPERFAMILY SSF53822 62 331 5.18E-88 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.2E-21 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 Gene3D G3DSA:3.40.50.2300 55 173 5.6E-53 T 11-11-2016 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 SUPERFAMILY SSF47413 2 60 4.02E-20 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 11-11-2016 Gferi_RS25940 9d8a4ce045ae0c30e952a6c1a8beeabe 332 Pfam PF13377 Periplasmic binding protein-like domain 170 331 9.8E-37 T 11-11-2016 Gferi_RS18835 b18a617e70551c62fe639bd92dd8f300 353 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 15 242 5.1E-49 T 11-11-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Gferi_RS18835 b18a617e70551c62fe639bd92dd8f300 353 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 248 340 8.3E-23 T 11-11-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Gferi_RS18835 b18a617e70551c62fe639bd92dd8f300 353 Gene3D G3DSA:3.40.50.970 2 187 1.3E-68 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS18835 b18a617e70551c62fe639bd92dd8f300 353 Gene3D G3DSA:3.40.50.920 238 350 1.0E-24 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS18835 b18a617e70551c62fe639bd92dd8f300 353 SUPERFAMILY SSF52922 239 351 5.63E-25 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS18835 b18a617e70551c62fe639bd92dd8f300 353 SUPERFAMILY SSF52518 1 238 1.67E-60 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS09795 06859ad63264744cee18c32e7449cf35 210 Pfam PF01522 Polysaccharide deacetylase 15 135 7.6E-36 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS09795 06859ad63264744cee18c32e7449cf35 210 SUPERFAMILY SSF88713 8 206 1.16E-65 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS09795 06859ad63264744cee18c32e7449cf35 210 Gene3D G3DSA:3.20.20.370 6 205 6.6E-67 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS12205 85c88dd3b3786d71622dfbefe9d6632c 207 Pfam PF02223 Thymidylate kinase 8 197 9.8E-61 T 11-11-2016 Gferi_RS12205 85c88dd3b3786d71622dfbefe9d6632c 207 Gene3D G3DSA:3.40.50.300 3 206 4.5E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12205 85c88dd3b3786d71622dfbefe9d6632c 207 SUPERFAMILY SSF52540 1 205 1.04E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12205 85c88dd3b3786d71622dfbefe9d6632c 207 Hamap MF_00165 Thymidylate kinase [tmk]. 4 205 32.515 T 11-11-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Gferi_RS12205 85c88dd3b3786d71622dfbefe9d6632c 207 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 3 197 3.4E-62 T 11-11-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Gferi_RS12205 85c88dd3b3786d71622dfbefe9d6632c 207 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 11-11-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 Pfam PF02954 Bacterial regulatory protein, Fis family 450 486 5.8E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 Gene3D G3DSA:3.40.50.300 168 342 1.4E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 195 208 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 Gene3D G3DSA:3.30.450.20 26 135 2.0E-10 T 11-11-2016 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 SUPERFAMILY SSF46689 383 489 2.06E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 SMART SM00382 191 333 1.8E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 Gene3D G3DSA:1.10.10.60 393 488 1.3E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 SUPERFAMILY SSF52540 170 402 1.17E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 Pfam PF08448 PAS fold 36 135 3.8E-5 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 469 489 5.2E-6 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 452 469 5.2E-6 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 Pfam PF00158 Sigma-54 interaction domain 171 336 5.1E-59 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 28 137 2.8E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 Gene3D G3DSA:1.10.8.60 343 392 1.0E-17 T 11-11-2016 Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 383 392 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 SUPERFAMILY SSF55785 24 135 9.42E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS07830 ee82ac4909cdcb1aba4f52c1e339198e 499 SMART SM00091 30 96 8.8E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS12505 fa60608de42abfb4ee05ce85ff0b96ba 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 1.8E-17 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS12505 fa60608de42abfb4ee05ce85ff0b96ba 225 SMART SM00862 146 221 1.9E-15 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS12505 fa60608de42abfb4ee05ce85ff0b96ba 225 Gene3D G3DSA:1.10.10.10 125 222 1.5E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12505 fa60608de42abfb4ee05ce85ff0b96ba 225 SUPERFAMILY SSF46894 123 222 5.1E-24 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS12505 fa60608de42abfb4ee05ce85ff0b96ba 225 SUPERFAMILY SSF52172 2 118 6.97E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS12505 fa60608de42abfb4ee05ce85ff0b96ba 225 SMART SM00448 1 112 2.5E-40 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS12505 fa60608de42abfb4ee05ce85ff0b96ba 225 Pfam PF00072 Response regulator receiver domain 3 113 1.7E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS12505 fa60608de42abfb4ee05ce85ff0b96ba 225 Gene3D G3DSA:3.40.50.2300 2 120 2.0E-38 T 11-11-2016 Gferi_RS23065 eb4456126d74ab7537bfa7e5aa295eb1 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 310 6.5E-12 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Gferi_RS23065 eb4456126d74ab7537bfa7e5aa295eb1 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 278 1.1E-54 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Gferi_RS23065 eb4456126d74ab7537bfa7e5aa295eb1 316 Gene3D G3DSA:3.40.50.720 4 114 9.1E-22 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS23065 eb4456126d74ab7537bfa7e5aa295eb1 316 SUPERFAMILY SSF51735 99 280 1.02E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS23065 eb4456126d74ab7537bfa7e5aa295eb1 316 Gene3D G3DSA:3.40.50.720 115 282 6.3E-58 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS23065 eb4456126d74ab7537bfa7e5aa295eb1 316 SUPERFAMILY SSF52283 4 125 3.4E-14 T 11-11-2016 Gferi_RS23065 eb4456126d74ab7537bfa7e5aa295eb1 316 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 218 234 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS22100 61095fab775d7b259beeb3d270d7eda9 228 SMART SM00862 146 221 1.2E-19 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS22100 61095fab775d7b259beeb3d270d7eda9 228 SMART SM00448 1 112 1.2E-40 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22100 61095fab775d7b259beeb3d270d7eda9 228 Pfam PF00072 Response regulator receiver domain 3 112 8.0E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22100 61095fab775d7b259beeb3d270d7eda9 228 SUPERFAMILY SSF52172 1 121 4.7E-40 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS22100 61095fab775d7b259beeb3d270d7eda9 228 Gene3D G3DSA:3.40.50.2300 1 120 2.7E-39 T 11-11-2016 Gferi_RS22100 61095fab775d7b259beeb3d270d7eda9 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 2.7E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS22100 61095fab775d7b259beeb3d270d7eda9 228 Gene3D G3DSA:1.10.10.10 125 222 3.1E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22100 61095fab775d7b259beeb3d270d7eda9 228 SUPERFAMILY SSF46894 123 222 7.94E-26 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS12470 62baf9a191fde355141b3da06f35da25 213 Pfam PF02589 Uncharacterised ACR, YkgG family COG1556 15 207 6.3E-49 T 11-11-2016 IPR003741 LUD domain Gferi_RS12470 62baf9a191fde355141b3da06f35da25 213 SUPERFAMILY SSF100950 16 156 4.54E-6 T 11-11-2016 Gferi_RS12470 62baf9a191fde355141b3da06f35da25 213 PIRSF PIRSF020269 1 213 1.3E-76 T 11-11-2016 IPR009501 Uncharacterised conserved protein UCP020269 Gferi_RS12470 62baf9a191fde355141b3da06f35da25 213 Gene3D G3DSA:3.40.50.10420 15 156 2.0E-7 T 11-11-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain Gferi_RS19660 7c674d3418fc11a7a38a9988bffc81df 120 SMART SM00418 6 84 3.3E-20 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19660 7c674d3418fc11a7a38a9988bffc81df 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 2.8E-14 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19660 7c674d3418fc11a7a38a9988bffc81df 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 2.8E-14 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19660 7c674d3418fc11a7a38a9988bffc81df 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 2.8E-14 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19660 7c674d3418fc11a7a38a9988bffc81df 120 SUPERFAMILY SSF46785 1 104 1.3E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19660 7c674d3418fc11a7a38a9988bffc81df 120 Gene3D G3DSA:1.10.10.10 1 85 2.2E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19660 7c674d3418fc11a7a38a9988bffc81df 120 Pfam PF01022 Bacterial regulatory protein, arsR family 13 57 1.6E-13 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS25150 478abe82b81116c618516448739db1fb 386 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 6 299 2.6E-70 T 11-11-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 Gferi_RS25150 478abe82b81116c618516448739db1fb 386 SUPERFAMILY SSF49764 318 385 1.57E-6 T 11-11-2016 IPR008978 HSP20-like chaperone Gferi_RS25150 478abe82b81116c618516448739db1fb 386 SUPERFAMILY SSF52540 1 157 4.36E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25150 478abe82b81116c618516448739db1fb 386 SUPERFAMILY SSF52540 190 279 4.36E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25150 478abe82b81116c618516448739db1fb 386 Pfam PF02374 Anion-transporting ATPase 1 302 2.1E-83 T 11-11-2016 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 Gferi_RS25150 478abe82b81116c618516448739db1fb 386 Gene3D G3DSA:3.40.50.300 194 291 3.0E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25150 478abe82b81116c618516448739db1fb 386 Gene3D G3DSA:3.40.50.300 1 161 3.0E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00935 6419dda85cc537f7dd12dbf9b314febf 73 Pfam PF06289 Flagellar protein (FlbD) 1 59 1.4E-27 T 11-11-2016 IPR009384 Flagellar Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 SUPERFAMILY SSF52540 4 232 2.17E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 Gene3D G3DSA:3.40.50.300 5 278 1.8E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 Gene3D G3DSA:3.40.50.300 313 552 3.8E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 SMART SM00382 28 226 1.3E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 SMART SM00382 337 514 1.2E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 Pfam PF16326 ABC transporter C-terminal domain 566 632 6.4E-15 T 11-11-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 SUPERFAMILY SSF52540 307 522 8.08E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 Pfam PF00005 ABC transporter 332 463 8.4E-20 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 Pfam PF00005 ABC transporter 19 181 1.7E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS15015 ae0674bd5586683b766eef02abde4572 641 Pfam PF12848 ABC transporter 220 292 1.3E-12 T 11-11-2016 IPR032781 ABC-transporter extension domain Gferi_RS13965 5c33d521668e936fa33d8bb2990fa1ca 107 Gene3D G3DSA:1.10.10.60 8 93 8.5E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13965 5c33d521668e936fa33d8bb2990fa1ca 107 SUPERFAMILY SSF46689 3 95 7.17E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13965 5c33d521668e936fa33d8bb2990fa1ca 107 Pfam PF01527 Transposase 1 73 1.5E-13 T 11-11-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Gferi_RS24095 19bb5ab8030477faa4e9a436983b0381 191 Pfam PF12840 Helix-turn-helix domain 11 69 8.9E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24095 19bb5ab8030477faa4e9a436983b0381 191 Gene3D G3DSA:1.10.10.10 10 80 3.9E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24095 19bb5ab8030477faa4e9a436983b0381 191 SUPERFAMILY SSF46785 1 122 2.57E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19360 5f654ea9596babc3f9929db3805658b0 169 Pfam PF01479 S4 domain 116 161 2.0E-9 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS19360 5f654ea9596babc3f9929db3805658b0 169 Gene3D G3DSA:3.10.290.10 115 163 4.6E-12 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS19360 5f654ea9596babc3f9929db3805658b0 169 SUPERFAMILY SSF55174 114 165 1.2E-9 T 11-11-2016 Gferi_RS19360 5f654ea9596babc3f9929db3805658b0 169 SMART SM00363 115 168 2.2E-6 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 14 176 7.4E-15 T 11-11-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 364 512 9.7E-26 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 TIGRFAM TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit 1 586 1.4E-216 T 11-11-2016 IPR017721 Indolepyruvate ferredoxin oxidoreductase, alpha subunit GO:0043805|GO:0055114 Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 Gene3D G3DSA:3.40.50.970 329 565 2.7E-25 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 SUPERFAMILY SSF52518 3 227 6.66E-61 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 SUPERFAMILY SSF52922 222 283 3.34E-7 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 571 582 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 SUPERFAMILY SSF54862 531 589 2.46E-11 T 11-11-2016 Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 Pfam PF00037 4Fe-4S binding domain 565 587 7.0E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 Gene3D G3DSA:3.40.50.970 2 179 1.1E-58 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 PIRSF PIRSF006439 1 591 1.6E-228 T 11-11-2016 IPR017721 Indolepyruvate ferredoxin oxidoreductase, alpha subunit GO:0043805|GO:0055114 Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 SUPERFAMILY SSF52518 336 526 4.24E-28 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03965 b8298bf960a80ef01d43827d6758e825 591 Gene3D G3DSA:3.30.70.20 566 587 4.8E-5 T 11-11-2016 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 Pfam PF12833 Helix-turn-helix domain 152 229 4.6E-22 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 SMART SM00448 2 117 4.1E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 Gene3D G3DSA:1.10.10.60 182 230 3.4E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 Pfam PF00072 Response regulator receiver domain 5 115 5.0E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 Gene3D G3DSA:1.10.10.60 129 181 4.4E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 SUPERFAMILY SSF46689 181 230 2.6E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 Gene3D G3DSA:3.40.50.2300 3 128 9.7E-31 T 11-11-2016 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 SUPERFAMILY SSF52172 1 152 3.27E-32 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 212 228 1.9E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 197 212 1.9E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 182 224 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS09970 4917dec65b54c1e1a3a95948bd5d79ce 232 SMART SM00342 145 228 1.6E-25 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS09080 cff71436533bf0f04fbcca93e1d03faa 457 Gene3D G3DSA:1.25.40.10 272 377 7.9E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 Gene3D G3DSA:3.40.50.300 260 502 7.3E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 Pfam PF00005 ABC transporter 14 180 2.7E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 Pfam PF00005 ABC transporter 285 444 3.4E-17 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 Gene3D G3DSA:3.40.50.300 1 238 4.1E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 SUPERFAMILY SSF52540 2 237 6.12E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 SUPERFAMILY SSF52540 268 500 4.21E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 ProSitePatterns PS00211 ABC transporters family signature. 417 431 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 SMART SM00382 293 493 9.2 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04110 64f3390f8d04669b6e136030fa50f539 527 SMART SM00382 23 228 9.0E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11110 927230928081d4877f740346e5424a20 350 Pfam PF03481 Putative GTP-binding controlling metal-binding 201 344 3.4E-26 T 11-11-2016 IPR005145 Putative GTP-binding controlling metal-binding domain Gferi_RS11110 927230928081d4877f740346e5424a20 350 Pfam PF01300 Telomere recombination 24 199 2.1E-60 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 Gferi_RS11110 927230928081d4877f740346e5424a20 350 PIRSF PIRSF004930 1 350 5.2E-130 T 11-11-2016 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 Gferi_RS11110 927230928081d4877f740346e5424a20 350 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 12 210 1.8E-66 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 Gferi_RS11110 927230928081d4877f740346e5424a20 350 SUPERFAMILY SSF55821 4 212 9.16E-69 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain Gferi_RS11110 927230928081d4877f740346e5424a20 350 Gene3D G3DSA:3.90.870.10 4 206 2.0E-82 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 Hamap MF_01113 DNA polymerase IV [dinB]. 1 338 34.498 T 11-11-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 Pfam PF11798 IMS family HHH motif 154 184 5.7E-9 T 11-11-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 Gene3D G3DSA:3.30.70.270 58 151 5.3E-29 T 11-11-2016 Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 Gene3D G3DSA:3.30.1490.100 228 331 7.9E-23 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 SUPERFAMILY SSF100879 226 326 9.42E-22 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 SUPERFAMILY SSF56672 1 221 6.4E-82 T 11-11-2016 Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 Gene3D G3DSA:1.10.150.20 154 222 3.4E-22 T 11-11-2016 Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 Pfam PF11799 impB/mucB/samB family C-terminal domain 224 331 8.9E-14 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Gferi_RS26185 ab1cbf4bfc5cb8dd147874d5ece412ab 344 Pfam PF00817 impB/mucB/samB family 1 140 1.8E-47 T 11-11-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Gferi_RS01360 efffa826c6e6bea0ce6277f866ce8c4c 97 SUPERFAMILY SSF48295 1 57 2.3E-15 T 11-11-2016 IPR010921 Trp repressor/replication initiator GO:0043565 Gferi_RS01360 efffa826c6e6bea0ce6277f866ce8c4c 97 Gene3D G3DSA:1.10.10.10 2 59 2.1E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01360 efffa826c6e6bea0ce6277f866ce8c4c 97 Pfam PF01527 Transposase 1 73 4.4E-12 T 11-11-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 6 198 6.1E-26 T 11-11-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 309 320 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Gene3D G3DSA:3.30.70.20 143 179 1.0E-12 T 11-11-2016 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 SUPERFAMILY SSF54862 143 196 3.45E-13 T 11-11-2016 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Gene3D G3DSA:3.30.70.20 253 284 1.0E-9 T 11-11-2016 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Gene3D G3DSA:3.30.70.20 180 226 1.5E-9 T 11-11-2016 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Pfam PF04060 Putative Fe-S cluster 46 78 4.0E-13 T 11-11-2016 IPR007202 4Fe-4S domain GO:0051536 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Pfam PF13187 4Fe-4S dicluster domain 218 262 4.7E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 218 229 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 173 184 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 247 258 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Pfam PF00037 4Fe-4S binding domain 167 188 7.4E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Gene3D G3DSA:3.30.70.20 285 326 8.2E-14 T 11-11-2016 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Gene3D G3DSA:3.30.70.20 227 252 9.3E-14 T 11-11-2016 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 279 290 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 Pfam PF14697 4Fe-4S dicluster domain 272 326 4.5E-10 T 11-11-2016 Gferi_RS26245 6c75ee493f8453761afcc05393c30d35 327 SUPERFAMILY SSF54862 203 326 5.59E-28 T 11-11-2016 Gferi_RS07115 868368c754e65c9aac236f2d2887bd30 201 Gene3D G3DSA:3.40.50.150 35 180 1.2E-28 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS07115 868368c754e65c9aac236f2d2887bd30 201 Pfam PF13489 Methyltransferase domain 29 143 8.0E-16 T 11-11-2016 Gferi_RS07115 868368c754e65c9aac236f2d2887bd30 201 SUPERFAMILY SSF53335 32 201 1.46E-27 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS02990 ae58d269ee42e3cfe6c8103059000ec5 194 SMART SM00793 3 185 2.6E-21 T 11-11-2016 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 Gferi_RS02990 ae58d269ee42e3cfe6c8103059000ec5 194 Pfam PF04647 Accessory gene regulator B 5 174 2.8E-40 T 11-11-2016 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 Gferi_RS18200 3912846906873565b3efc97342ddb730 319 SMART SM00861 4 169 2.3E-55 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS18200 3912846906873565b3efc97342ddb730 319 Gene3D G3DSA:3.40.50.920 181 308 3.1E-38 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS18200 3912846906873565b3efc97342ddb730 319 Gene3D G3DSA:3.40.50.970 3 180 2.2E-58 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS18200 3912846906873565b3efc97342ddb730 319 SUPERFAMILY SSF52518 3 170 4.02E-54 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS18200 3912846906873565b3efc97342ddb730 319 Pfam PF02780 Transketolase, C-terminal domain 180 299 9.1E-31 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS18200 3912846906873565b3efc97342ddb730 319 SUPERFAMILY SSF52922 174 309 1.83E-33 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS18200 3912846906873565b3efc97342ddb730 319 ProSitePatterns PS00802 Transketolase signature 2. 112 128 - T 11-11-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS18200 3912846906873565b3efc97342ddb730 319 Pfam PF02779 Transketolase, pyrimidine binding domain 5 168 1.6E-36 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS00290 c1ffd59934444760fcfe86d8786173ed 75 Pfam PF10031 Small integral membrane protein (DUF2273) 10 56 1.1E-15 T 11-11-2016 IPR018730 Protein of unknown function DUF2273 Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 SUPERFAMILY SSF50156 92 183 4.15E-17 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 Gene3D G3DSA:2.30.42.10 107 183 3.3E-25 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 Pfam PF13180 PDZ domain 102 174 3.8E-12 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 Gene3D G3DSA:1.10.101.10 379 446 1.3E-11 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 55 364 1.7E-104 T 11-11-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 Gene3D G3DSA:3.90.226.10 184 362 3.5E-68 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 Gene3D G3DSA:3.90.226.10 449 469 3.5E-68 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 SUPERFAMILY SSF47090 379 443 1.57E-12 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 Pfam PF01471 Putative peptidoglycan binding domain 390 440 3.5E-10 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 SMART SM00228 101 172 1.7E-14 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 SMART SM00245 174 360 1.0E-68 T 11-11-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 Gene3D G3DSA:3.30.750.44 60 106 9.0E-5 T 11-11-2016 Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 SUPERFAMILY SSF52096 45 119 9.94E-77 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 SUPERFAMILY SSF52096 193 370 9.94E-77 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS11475 e07c928e82d798c9d631033e3fb28ef9 470 Pfam PF03572 Peptidase family S41 199 359 8.2E-54 T 11-11-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Gferi_RS11830 9c347c2511a717f3c8ba034f946bdd10 272 SUPERFAMILY SSF55469 180 269 3.27E-11 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS11830 9c347c2511a717f3c8ba034f946bdd10 272 Pfam PF14512 Putative TM nitroreductase 5 237 4.7E-29 T 11-11-2016 IPR029478 Putative nitroreductase TM1586 Gferi_RS11830 9c347c2511a717f3c8ba034f946bdd10 272 Gene3D G3DSA:3.40.109.30 169 252 6.7E-13 T 11-11-2016 Gferi_RS11830 9c347c2511a717f3c8ba034f946bdd10 272 Gene3D G3DSA:3.40.109.10 1 168 9.6E-25 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS11830 9c347c2511a717f3c8ba034f946bdd10 272 SUPERFAMILY SSF55469 4 144 2.88E-23 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS23415 8942aee5e481212f4454433f869614a5 661 SMART SM00283 370 659 2.0E-61 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS23415 8942aee5e481212f4454433f869614a5 661 SMART SM00304 301 355 0.0014 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS23415 8942aee5e481212f4454433f869614a5 661 Pfam PF00672 HAMP domain 282 350 6.2E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS23415 8942aee5e481212f4454433f869614a5 661 Gene3D G3DSA:1.10.287.950 334 408 1.3E-5 T 11-11-2016 Gferi_RS23415 8942aee5e481212f4454433f869614a5 661 Gene3D G3DSA:1.10.287.950 409 615 2.8E-49 T 11-11-2016 Gferi_RS23415 8942aee5e481212f4454433f869614a5 661 SUPERFAMILY SSF58104 390 659 2.09E-68 T 11-11-2016 Gferi_RS23415 8942aee5e481212f4454433f869614a5 661 SUPERFAMILY SSF58104 323 357 2.09E-68 T 11-11-2016 Gferi_RS23415 8942aee5e481212f4454433f869614a5 661 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 442 642 1.3E-46 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS05195 5f99cc8d514604d41525d0509d6b658d 244 SMART SM00382 29 215 2.8E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05195 5f99cc8d514604d41525d0509d6b658d 244 Pfam PF00005 ABC transporter 24 166 4.2E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS05195 5f99cc8d514604d41525d0509d6b658d 244 SUPERFAMILY SSF52540 3 237 2.97E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05195 5f99cc8d514604d41525d0509d6b658d 244 Gene3D G3DSA:3.40.50.300 2 238 1.5E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05195 5f99cc8d514604d41525d0509d6b658d 244 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS26875 800ce18d0d0f4bcea564b9e7d0ba83c4 139 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 136 27.092 T 11-11-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Gferi_RS26875 800ce18d0d0f4bcea564b9e7d0ba83c4 139 SUPERFAMILY SSF53098 1 134 6.68E-44 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS26875 800ce18d0d0f4bcea564b9e7d0ba83c4 139 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 4 133 6.5E-47 T 11-11-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Gferi_RS26875 800ce18d0d0f4bcea564b9e7d0ba83c4 139 Pfam PF03652 Holliday junction resolvase 1 134 8.0E-46 T 11-11-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Gferi_RS26875 800ce18d0d0f4bcea564b9e7d0ba83c4 139 Gene3D G3DSA:3.30.420.140 1 135 1.6E-52 T 11-11-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 Gferi_RS26875 800ce18d0d0f4bcea564b9e7d0ba83c4 139 SMART SM00732 1 101 4.9E-40 T 11-11-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 Gferi_RS22725 1e1f06b91113c37673360ac0e2bc5593 355 Pfam PF08402 TOBE domain 285 355 6.4E-5 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Gferi_RS22725 1e1f06b91113c37673360ac0e2bc5593 355 SUPERFAMILY SSF50331 245 355 1.02E-9 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal Gferi_RS22725 1e1f06b91113c37673360ac0e2bc5593 355 Gene3D G3DSA:3.40.50.300 6 242 2.0E-78 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22725 1e1f06b91113c37673360ac0e2bc5593 355 SUPERFAMILY SSF52540 9 249 8.19E-86 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22725 1e1f06b91113c37673360ac0e2bc5593 355 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22725 1e1f06b91113c37673360ac0e2bc5593 355 Pfam PF00005 ABC transporter 28 169 3.1E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22725 1e1f06b91113c37673360ac0e2bc5593 355 SMART SM00382 36 219 6.5E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00675 bd75f9f7d759251ef73fce4d6ec7c5ba 144 TIGRFAM TIGR00576 dut: dUTP diphosphatase 8 144 7.0E-51 T 11-11-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|Reactome: R-HSA-500753 Gferi_RS00675 bd75f9f7d759251ef73fce4d6ec7c5ba 144 Pfam PF00692 dUTPase 13 143 4.7E-31 T 11-11-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 Gferi_RS00675 bd75f9f7d759251ef73fce4d6ec7c5ba 144 Gene3D G3DSA:2.70.40.10 8 144 2.1E-51 T 11-11-2016 IPR029054 dUTPase-like Gferi_RS00675 bd75f9f7d759251ef73fce4d6ec7c5ba 144 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 2 144 30.757 T 11-11-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|Reactome: R-HSA-500753 Gferi_RS00675 bd75f9f7d759251ef73fce4d6ec7c5ba 144 SUPERFAMILY SSF51283 5 144 2.09E-49 T 11-11-2016 IPR029054 dUTPase-like Gferi_RS15385 3d018ca0cd3cb013431b88f0d49760b4 72 SMART SM00899 2 72 2.9E-12 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Gferi_RS15385 3d018ca0cd3cb013431b88f0d49760b4 72 Pfam PF04023 FeoA domain 2 71 2.6E-14 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Gferi_RS15385 3d018ca0cd3cb013431b88f0d49760b4 72 SUPERFAMILY SSF50037 4 71 1.26E-10 T 11-11-2016 IPR008988 Transcriptional repressor, C-terminal Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 Pfam PF00333 Ribosomal protein S5, N-terminal domain 13 77 2.6E-30 T 11-11-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 Gene3D G3DSA:3.30.230.10 79 161 6.7E-33 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 Pfam PF03719 Ribosomal protein S5, C-terminal domain 88 159 4.5E-31 T 11-11-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 ProSitePatterns PS00585 Ribosomal protein S5 signature. 30 62 - T 11-11-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 SUPERFAMILY SSF54768 10 78 1.15E-23 T 11-11-2016 Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 12 165 6.6E-65 T 11-11-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 165 34.476 T 11-11-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 SUPERFAMILY SSF54211 82 161 4.05E-26 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS17480 b20b211ba61ffbd7d198d9349c7a7bb3 168 Gene3D G3DSA:3.30.160.20 12 75 2.2E-30 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain Gferi_RS04325 5dbecaab669f076098e05fd51ec9d321 314 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 102 135 6.5E-11 T 11-11-2016 IPR011964 YVTN beta-propeller repeat Gferi_RS04325 5dbecaab669f076098e05fd51ec9d321 314 Pfam PF10282 Lactonase, 7-bladed beta-propeller 8 165 1.1E-5 T 11-11-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31 Gferi_RS04325 5dbecaab669f076098e05fd51ec9d321 314 Gene3D G3DSA:2.130.10.10 6 311 2.5E-56 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Gferi_RS04325 5dbecaab669f076098e05fd51ec9d321 314 SUPERFAMILY SSF50974 6 312 3.66E-55 T 11-11-2016 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 Gferi_RS10905 85c186679dbdf8ebbcffcb70128f949f 175 Pfam PF04892 VanZ like family 10 158 4.7E-17 T 11-11-2016 IPR006976 VanZ-like Gferi_RS19755 7fe9dd241a67dc081460a6c99830aa84 342 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 302 3.7E-40 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS00995 cb45bfbc3cf50fae2a867ec21fbe7f99 147 Pfam PF00460 Flagella basal body rod protein 7 34 2.3E-8 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Gferi_RS00995 cb45bfbc3cf50fae2a867ec21fbe7f99 147 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 95 144 8.6E-13 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Gferi_RS00995 cb45bfbc3cf50fae2a867ec21fbe7f99 147 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 147 2.1E-54 T 11-11-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 Gferi_RS07615 69576daf080bc1642655c29d4e67a0ef 321 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 280 295 1.7E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS07615 69576daf080bc1642655c29d4e67a0ef 321 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 295 311 1.7E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS07615 69576daf080bc1642655c29d4e67a0ef 321 SMART SM00342 228 311 2.3E-25 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS07615 69576daf080bc1642655c29d4e67a0ef 321 Gene3D G3DSA:1.10.10.60 209 265 9.8E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07615 69576daf080bc1642655c29d4e67a0ef 321 Gene3D G3DSA:1.10.10.60 266 314 1.9E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07615 69576daf080bc1642655c29d4e67a0ef 321 Pfam PF12833 Helix-turn-helix domain 234 312 6.5E-20 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS07615 69576daf080bc1642655c29d4e67a0ef 321 SUPERFAMILY SSF46689 264 315 7.77E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07615 69576daf080bc1642655c29d4e67a0ef 321 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 265 307 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS11800 bd81e4534f31a919f01c9c2b9c50ac42 490 Gene3D G3DSA:3.20.20.70 59 463 3.9E-71 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS11800 bd81e4534f31a919f01c9c2b9c50ac42 490 Pfam PF01645 Conserved region in glutamate synthase 110 425 2.0E-52 T 11-11-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Gferi_RS11800 bd81e4534f31a919f01c9c2b9c50ac42 490 PIRSF PIRSF006429 1 489 2.1E-92 T 11-11-2016 IPR024188 Glutamate synthase large subunit-like protein Gferi_RS11800 bd81e4534f31a919f01c9c2b9c50ac42 490 SUPERFAMILY SSF51395 83 440 3.3E-65 T 11-11-2016 Gferi_RS17875 30aae4946b6d2c44669e9c27887680a7 214 Gene3D G3DSA:3.20.20.70 2 212 7.9E-77 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS17875 30aae4946b6d2c44669e9c27887680a7 214 SUPERFAMILY SSF51569 3 208 2.38E-64 T 11-11-2016 Gferi_RS17875 30aae4946b6d2c44669e9c27887680a7 214 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 8 207 1.3E-56 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Gferi_RS17875 30aae4946b6d2c44669e9c27887680a7 214 Pfam PF01081 KDPG and KHG aldolase 9 197 3.0E-46 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Gferi_RS17875 30aae4946b6d2c44669e9c27887680a7 214 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 31 126 6.9E-5 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 Gene3D G3DSA:3.40.350.10 1 125 4.0E-31 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 283 295 - T 11-11-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 Pfam PF01321 Creatinase/Prolidase N-terminal domain 4 127 6.9E-26 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 Pfam PF00557 Metallopeptidase family M24 135 337 3.1E-70 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 PRINTS PR00599 Methionine aminopeptidase-1 signature 207 223 8.6E-6 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 PRINTS PR00599 Methionine aminopeptidase-1 signature 305 317 8.6E-6 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 PRINTS PR00599 Methionine aminopeptidase-1 signature 274 286 8.6E-6 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 Gene3D G3DSA:3.90.230.10 127 352 2.7E-90 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS00355 21b974c953f18389436a254d21d42b1b 353 SUPERFAMILY SSF55920 80 346 6.54E-82 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS01460 ec007ab79ba600edc80fa130fd15670d 558 Pfam PF13408 Recombinase zinc beta ribbon domain 330 394 5.0E-14 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS01460 ec007ab79ba600edc80fa130fd15670d 558 Pfam PF00239 Resolvase, N terminal domain 6 149 1.1E-37 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS01460 ec007ab79ba600edc80fa130fd15670d 558 SUPERFAMILY SSF53041 4 149 8.11E-35 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS01460 ec007ab79ba600edc80fa130fd15670d 558 Gene3D G3DSA:3.40.50.1390 5 132 2.8E-30 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS01460 ec007ab79ba600edc80fa130fd15670d 558 SMART SM00857 4 149 1.4E-55 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS01460 ec007ab79ba600edc80fa130fd15670d 558 Pfam PF07508 Recombinase 182 313 4.3E-17 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS24145 0396ffa66f5326b4735870932e644a55 395 Pfam PF00155 Aminotransferase class I and II 43 384 4.6E-66 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS24145 0396ffa66f5326b4735870932e644a55 395 SUPERFAMILY SSF53383 7 393 5.24E-117 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS24145 0396ffa66f5326b4735870932e644a55 395 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 240 249 - T 11-11-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 Gferi_RS24145 0396ffa66f5326b4735870932e644a55 395 Gene3D G3DSA:3.90.1150.10 278 391 6.5E-32 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS24145 0396ffa66f5326b4735870932e644a55 395 TIGRFAM TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase 10 395 4.3E-180 T 11-11-2016 IPR010962 Putative 8-amino-7-oxononanoate synthase, Archaea/Firmicutes type Gferi_RS24145 0396ffa66f5326b4735870932e644a55 395 Gene3D G3DSA:3.40.640.10 61 277 1.0E-89 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS24145 0396ffa66f5326b4735870932e644a55 395 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 23 385 1.0E-131 T 11-11-2016 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 Gferi_RS17550 0896e7d6310ab36e10b18a16bf296441 279 TIGRFAM TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase 5 276 1.2E-123 T 11-11-2016 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 Gferi_RS17550 0896e7d6310ab36e10b18a16bf296441 279 Pfam PF00005 ABC transporter 25 172 1.1E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS17550 0896e7d6310ab36e10b18a16bf296441 279 Gene3D G3DSA:3.40.50.300 3 233 1.4E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17550 0896e7d6310ab36e10b18a16bf296441 279 SUPERFAMILY SSF52540 3 236 7.87E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17550 0896e7d6310ab36e10b18a16bf296441 279 SMART SM00382 34 220 4.6E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS17550 0896e7d6310ab36e10b18a16bf296441 279 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS08830 e3915b04486220b0d1d34c9db4c3593f 450 SUPERFAMILY SSF53448 91 377 2.73E-50 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS08830 e3915b04486220b0d1d34c9db4c3593f 450 Pfam PF13641 Glycosyltransferase like family 2 100 325 4.1E-28 T 11-11-2016 Gferi_RS08830 e3915b04486220b0d1d34c9db4c3593f 450 Gene3D G3DSA:3.90.550.10 100 331 2.2E-33 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 643 1.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 612 622 1.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 649 662 1.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 PRINTS PR00344 Bacterial sensor protein C-terminal signature 594 608 1.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Gene3D G3DSA:3.30.450.20 319 435 5.7E-9 T 11-11-2016 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SUPERFAMILY SSF55785 315 404 1.08E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Gene3D G3DSA:3.40.190.10 52 132 1.6E-28 T 11-11-2016 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Gene3D G3DSA:3.40.190.10 234 273 1.6E-28 T 11-11-2016 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Pfam PF00512 His Kinase A (phospho-acceptor) domain 453 514 1.2E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SUPERFAMILY SSF47384 446 515 1.43E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SUPERFAMILY SSF55874 505 663 7.33E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Gene3D G3DSA:3.30.565.10 502 667 1.4E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Pfam PF13426 PAS domain 339 435 6.3E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Gene3D G3DSA:3.40.190.10 133 233 4.0E-14 T 11-11-2016 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 58 272 4.0E-43 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SUPERFAMILY SSF53850 50 275 6.21E-46 T 11-11-2016 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 560 663 8.7E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SMART SM00062 56 274 3.4E-32 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SMART SM00091 498 564 58.0 T 11-11-2016 IPR000014 PAS domain Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SMART SM00091 327 393 0.15 T 11-11-2016 IPR000014 PAS domain Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SMART SM00387 557 665 3.1E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 SMART SM00388 451 516 2.0E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS19570 41020bf1372c76043444b2d6ce7dcf55 670 Gene3D G3DSA:1.10.287.130 448 501 6.5E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22195 a0cf5b4c2ec74f7f907ca408c921fb20 399 SMART SM00729 58 264 0.0021 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS22195 a0cf5b4c2ec74f7f907ca408c921fb20 399 TIGRFAM TIGR04317 W_rSAM_matur: tungsten cofactor oxidoreducase radical SAM maturase 56 399 1.6E-128 T 11-11-2016 IPR027604 Tungsten cofactor oxidoreducase radical SAM maturase Gferi_RS22195 a0cf5b4c2ec74f7f907ca408c921fb20 399 Gene3D G3DSA:3.20.20.70 57 370 1.4E-53 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS22195 a0cf5b4c2ec74f7f907ca408c921fb20 399 Pfam PF13394 4Fe-4S single cluster domain 65 145 3.4E-6 T 11-11-2016 Gferi_RS22195 a0cf5b4c2ec74f7f907ca408c921fb20 399 Pfam PF04055 Radical SAM superfamily 62 198 1.0E-13 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS22195 a0cf5b4c2ec74f7f907ca408c921fb20 399 SUPERFAMILY SSF102114 59 369 2.88E-48 T 11-11-2016 Gferi_RS22195 a0cf5b4c2ec74f7f907ca408c921fb20 399 Pfam PF13186 Iron-sulfur cluster-binding domain 286 364 7.1E-12 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 229 3.8E-28 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 SUPERFAMILY SSF53335 1 252 4.51E-57 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 TIGRFAM TIGR00571 dam: DNA adenine methylase 3 250 9.4E-37 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 Gene3D G3DSA:1.10.1020.10 59 140 2.0E-6 T 11-11-2016 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 Gene3D G3DSA:3.40.50.150 1 58 3.8E-51 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 Gene3D G3DSA:3.40.50.150 151 252 3.8E-51 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 8 24 6.5E-10 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 49 62 6.5E-10 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 29 43 6.5E-10 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 167 179 6.5E-10 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01125 704975f18590fac7293d52b6b0a1e2d9 261 PIRSF PIRSF000398 1 256 8.0E-44 T 11-11-2016 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 SUPERFAMILY SSF51306 27 169 1.92E-47 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 ProSitePatterns PS00761 Signal peptidases I signature 3. 129 142 - T 11-11-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 11 166 1.4E-47 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 92 1.1E-18 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 124 143 1.1E-18 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 28 44 1.1E-18 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 Gene3D G3DSA:2.10.109.10 124 169 3.1E-37 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 Gene3D G3DSA:2.10.109.10 24 90 3.1E-37 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 Pfam PF00717 Peptidase S24-like 34 101 3.6E-16 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B Gferi_RS01495 c015000aedffe475e70f015400c0aa81 170 ProSitePatterns PS00501 Signal peptidases I serine active site. 37 44 - T 11-11-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Gferi_RS05645 b2ba5a04ce0bfc0a51e423c5c439679c 299 SUPERFAMILY SSF52172 6 127 9.96E-22 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS05645 b2ba5a04ce0bfc0a51e423c5c439679c 299 SMART SM00448 3 116 4.0E-14 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05645 b2ba5a04ce0bfc0a51e423c5c439679c 299 Pfam PF00072 Response regulator receiver domain 6 116 1.1E-18 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05645 b2ba5a04ce0bfc0a51e423c5c439679c 299 Gene3D G3DSA:3.40.50.2300 5 127 6.2E-23 T 11-11-2016 Gferi_RS05645 b2ba5a04ce0bfc0a51e423c5c439679c 299 Pfam PF08664 YcbB domain 159 292 3.6E-41 T 11-11-2016 IPR013972 YcbB domain Gferi_RS15255 4043b7014d1cb1bb31004b2d9a9270dc 308 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 178 301 1.3E-31 T 11-11-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Gferi_RS15255 4043b7014d1cb1bb31004b2d9a9270dc 308 Pfam PF02558 Ketopantoate reductase PanE/ApbA 7 150 5.3E-25 T 11-11-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Gferi_RS15255 4043b7014d1cb1bb31004b2d9a9270dc 308 Gene3D G3DSA:3.40.50.720 5 175 4.6E-36 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS15255 4043b7014d1cb1bb31004b2d9a9270dc 308 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 6 303 7.2E-70 T 11-11-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Gferi_RS15255 4043b7014d1cb1bb31004b2d9a9270dc 308 SUPERFAMILY SSF48179 178 302 5.78E-28 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS15255 4043b7014d1cb1bb31004b2d9a9270dc 308 SUPERFAMILY SSF51735 6 158 5.09E-11 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS15255 4043b7014d1cb1bb31004b2d9a9270dc 308 Gene3D G3DSA:1.10.1040.10 178 306 2.5E-34 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS10380 2903068eddd3317c44e340bd198cedce 413 SUPERFAMILY SSF53098 116 282 6.83E-13 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS10380 2903068eddd3317c44e340bd198cedce 413 Gene3D G3DSA:3.30.420.10 142 280 1.8E-11 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS10380 2903068eddd3317c44e340bd198cedce 413 Pfam PF00665 Integrase core domain 116 242 1.1E-21 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 Gferi_RS14730 2903068eddd3317c44e340bd198cedce 413 SUPERFAMILY SSF53098 116 282 6.83E-13 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS14730 2903068eddd3317c44e340bd198cedce 413 Gene3D G3DSA:3.30.420.10 142 280 1.8E-11 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS14730 2903068eddd3317c44e340bd198cedce 413 Pfam PF00665 Integrase core domain 116 242 1.1E-21 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 Gferi_RS24985 e88288202864ece9273ee4d3607a0976 228 Gene3D G3DSA:2.60.120.10 3 141 5.5E-30 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS24985 e88288202864ece9273ee4d3607a0976 228 SMART SM00419 169 217 6.0E-10 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS24985 e88288202864ece9273ee4d3607a0976 228 Gene3D G3DSA:1.10.10.10 147 222 9.3E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24985 e88288202864ece9273ee4d3607a0976 228 SMART SM00100 13 134 1.8E-13 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS24985 e88288202864ece9273ee4d3607a0976 228 Pfam PF00027 Cyclic nucleotide-binding domain 33 117 1.0E-17 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS24985 e88288202864ece9273ee4d3607a0976 228 SUPERFAMILY SSF46785 147 222 7.75E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24985 e88288202864ece9273ee4d3607a0976 228 Pfam PF13545 Crp-like helix-turn-helix domain 151 218 4.5E-9 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS24985 e88288202864ece9273ee4d3607a0976 228 SUPERFAMILY SSF51206 7 145 1.96E-30 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS18715 fa740b9a2ff9f3937cd525c509fb755b 405 TIGRFAM TIGR00306 apgM: phosphoglycerate mutase (2,3-diphosphoglycerate-independent), archaeal form 19 394 8.1E-84 T 11-11-2016 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS18715 fa740b9a2ff9f3937cd525c509fb755b 405 Pfam PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 52 221 3.6E-41 T 11-11-2016 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS18715 fa740b9a2ff9f3937cd525c509fb755b 405 Pfam PF01676 Metalloenzyme superfamily 17 391 6.3E-35 T 11-11-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Gferi_RS18715 fa740b9a2ff9f3937cd525c509fb755b 405 PIRSF PIRSF006392 13 401 4.6E-110 T 11-11-2016 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS18715 fa740b9a2ff9f3937cd525c509fb755b 405 Gene3D G3DSA:3.40.720.10 17 95 1.4E-23 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS18715 fa740b9a2ff9f3937cd525c509fb755b 405 Gene3D G3DSA:3.40.720.10 201 364 1.4E-23 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS18715 fa740b9a2ff9f3937cd525c509fb755b 405 SUPERFAMILY SSF53649 232 361 2.22E-26 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS18715 fa740b9a2ff9f3937cd525c509fb755b 405 SUPERFAMILY SSF53649 16 104 2.22E-26 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS11165 61108d196b486f38554c68bfffc9a508 203 SUPERFAMILY SSF52540 8 141 1.95E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11165 61108d196b486f38554c68bfffc9a508 203 Pfam PF00265 Thymidine kinase 9 187 6.4E-57 T 11-11-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 Gferi_RS11165 61108d196b486f38554c68bfffc9a508 203 Hamap MF_00124 Thymidine kinase [tdk]. 7 190 37.658 T 11-11-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 Gferi_RS11165 61108d196b486f38554c68bfffc9a508 203 PIRSF PIRSF035805 5 200 2.3E-64 T 11-11-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 Gferi_RS11165 61108d196b486f38554c68bfffc9a508 203 Gene3D G3DSA:3.30.60.20 142 187 7.1E-15 T 11-11-2016 Gferi_RS11165 61108d196b486f38554c68bfffc9a508 203 SUPERFAMILY SSF57716 143 192 8.55E-16 T 11-11-2016 Gferi_RS11165 61108d196b486f38554c68bfffc9a508 203 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 174 187 - T 11-11-2016 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 Gferi_RS03520 221660532c6110f1f8037dee8d43c1b8 72 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 68 1.6E-18 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS03520 221660532c6110f1f8037dee8d43c1b8 72 Gene3D G3DSA:1.10.260.40 1 70 2.1E-13 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS03520 221660532c6110f1f8037dee8d43c1b8 72 SUPERFAMILY SSF47413 1 68 3.18E-12 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 SMART SM00487 277 476 3.2E-18 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 SUPERFAMILY SSF52540 590 687 2.52E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 SUPERFAMILY SSF52540 296 527 2.52E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 Pfam PF04851 Type III restriction enzyme, res subunit 279 444 3.0E-15 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 Gene3D G3DSA:3.40.50.300 492 515 6.9E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 Gene3D G3DSA:3.40.50.300 579 720 6.9E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 Hamap MF_00983 Probable primosomal protein N' [priA]. 12 824 23.906 T 11-11-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 Pfam PF00271 Helicase conserved C-terminal domain 599 675 2.2E-8 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 TIGRFAM TIGR00595 priA: primosomal protein N' 305 822 2.0E-193 T 11-11-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 SMART SM00490 579 676 1.9E-6 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS01715 497fe57d1929110133924c14ccb08cf8 825 Gene3D G3DSA:3.40.50.300 272 461 3.9E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01415 fb909542e13088886038962778d88ae2 112 Gene3D G3DSA:1.10.10.700 25 74 6.2E-5 T 11-11-2016 Gferi_RS22015 bef411c1eaa2cd1b705fe27aee1108ea 77 Gene3D G3DSA:3.30.2020.10 3 69 5.2E-8 T 11-11-2016 IPR018841 Protein of unknown function DUF2442 Gferi_RS22015 bef411c1eaa2cd1b705fe27aee1108ea 77 Pfam PF10387 Protein of unknown function (DUF2442) 4 72 1.3E-12 T 11-11-2016 IPR018841 Protein of unknown function DUF2442 Gferi_RS22015 bef411c1eaa2cd1b705fe27aee1108ea 77 SUPERFAMILY SSF143880 3 71 7.19E-11 T 11-11-2016 IPR018841 Protein of unknown function DUF2442 Gferi_RS06800 2aa9d7c0e9cd2db80a7e1f62748962ef 415 SUPERFAMILY SSF53850 50 413 1.38E-59 T 11-11-2016 Gferi_RS06800 2aa9d7c0e9cd2db80a7e1f62748962ef 415 Gene3D G3DSA:3.40.190.10 162 316 2.2E-5 T 11-11-2016 Gferi_RS06800 2aa9d7c0e9cd2db80a7e1f62748962ef 415 Gene3D G3DSA:3.40.190.10 317 361 4.2E-40 T 11-11-2016 Gferi_RS06800 2aa9d7c0e9cd2db80a7e1f62748962ef 415 Gene3D G3DSA:3.40.190.10 41 158 4.2E-40 T 11-11-2016 Gferi_RS06800 2aa9d7c0e9cd2db80a7e1f62748962ef 415 Pfam PF01547 Bacterial extracellular solute-binding protein 52 331 8.9E-32 T 11-11-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 Gferi_RS23120 b368fb803028ee70d1a0f89e9efaca3b 251 Pfam PF04397 LytTr DNA-binding domain 153 249 1.3E-29 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS23120 b368fb803028ee70d1a0f89e9efaca3b 251 Gene3D G3DSA:2.40.50.40 144 211 3.5E-21 T 11-11-2016 Gferi_RS23120 b368fb803028ee70d1a0f89e9efaca3b 251 SUPERFAMILY SSF52172 1 122 2.42E-28 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS23120 b368fb803028ee70d1a0f89e9efaca3b 251 Gene3D G3DSA:2.20.25.10 213 251 1.5E-11 T 11-11-2016 Gferi_RS23120 b368fb803028ee70d1a0f89e9efaca3b 251 Gene3D G3DSA:3.40.50.2300 1 124 1.1E-29 T 11-11-2016 Gferi_RS23120 b368fb803028ee70d1a0f89e9efaca3b 251 Pfam PF00072 Response regulator receiver domain 3 109 1.5E-20 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS23120 b368fb803028ee70d1a0f89e9efaca3b 251 SMART SM00448 1 112 1.4E-19 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS23120 b368fb803028ee70d1a0f89e9efaca3b 251 SMART SM00850 152 250 1.1E-34 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS25230 bc995ec5391c4c4cde2d8f80e23f9f3a 400 Gene3D G3DSA:3.90.1200.10 91 270 4.7E-9 T 11-11-2016 Gferi_RS25230 bc995ec5391c4c4cde2d8f80e23f9f3a 400 PIRSF PIRSF031134 1 399 5.0E-147 T 11-11-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754 Gferi_RS25230 bc995ec5391c4c4cde2d8f80e23f9f3a 400 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 30 395 2.5E-125 T 11-11-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754 Gferi_RS25230 bc995ec5391c4c4cde2d8f80e23f9f3a 400 SUPERFAMILY SSF56112 2 395 1.01E-84 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS25230 bc995ec5391c4c4cde2d8f80e23f9f3a 400 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 400 171.341 T 11-11-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754 Gferi_RS25230 bc995ec5391c4c4cde2d8f80e23f9f3a 400 Pfam PF01636 Phosphotransferase enzyme family 29 262 4.4E-10 T 11-11-2016 IPR002575 Aminoglycoside phosphotransferase Gferi_RS16855 4f7873d5a20d4d5261c66891abb65d64 280 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 10 279 8.6E-97 T 11-11-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Gferi_RS16855 4f7873d5a20d4d5261c66891abb65d64 280 Pfam PF05681 Fumarate hydratase (Fumerase) 11 278 7.2E-116 T 11-11-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 SUPERFAMILY SSF46785 1 86 2.39E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 Gene3D G3DSA:3.40.190.10 203 256 2.5E-13 T 11-11-2016 Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.9E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 Gene3D G3DSA:3.40.190.10 82 202 2.0E-17 T 11-11-2016 Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 Gene3D G3DSA:1.10.10.10 1 81 2.5E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 SUPERFAMILY SSF53850 90 302 2.17E-25 T 11-11-2016 Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS18265 ec696841af6f6a0073b68423544f27ff 305 Pfam PF03466 LysR substrate binding domain 90 295 2.4E-29 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS07580 9a8a456609a3c4de5b5b835a26a2e687 254 Pfam PF08241 Methyltransferase domain 54 148 7.7E-20 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Gferi_RS07580 9a8a456609a3c4de5b5b835a26a2e687 254 Gene3D G3DSA:3.40.50.150 8 208 1.5E-33 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS07580 9a8a456609a3c4de5b5b835a26a2e687 254 SUPERFAMILY SSF53335 5 252 8.82E-38 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 SUPERFAMILY SSF51971 110 337 2.06E-59 T 11-11-2016 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 330 346 5.4E-18 T 11-11-2016 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 358 380 5.4E-18 T 11-11-2016 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 130 5.4E-18 T 11-11-2016 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 238 256 5.4E-18 T 11-11-2016 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 3 97 1.1E-29 T 11-11-2016 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 Gene3D G3DSA:3.50.50.60 112 203 6.3E-21 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 Gene3D G3DSA:3.50.50.60 204 338 1.2E-40 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 Gene3D G3DSA:1.10.1060.10 4 111 2.5E-28 T 11-11-2016 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 SUPERFAMILY SSF46548 5 119 1.62E-23 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 110 393 9.9E-32 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 368 386 1.9E-14 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 110 132 1.9E-14 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 234 258 1.9E-14 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS10545 b4e6ff0749ec3cec35b1ac0ca1dacc65 413 SUPERFAMILY SSF51971 288 404 6.59E-7 T 11-11-2016 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Pfam PF13426 PAS domain 148 243 7.9E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Gene3D G3DSA:1.10.287.130 394 449 1.5E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Gene3D G3DSA:3.30.450.20 270 393 2.4E-17 T 11-11-2016 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Gene3D G3DSA:3.40.50.2300 641 758 7.3E-45 T 11-11-2016 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SUPERFAMILY SSF55785 9 124 5.23E-22 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Gene3D G3DSA:3.30.565.10 460 610 4.2E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00091 3 71 0.0039 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00091 133 199 1.5E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00091 256 322 0.046 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00086 327 368 18.0 T 11-11-2016 IPR001610 PAC motif Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00086 204 244 21.0 T 11-11-2016 IPR001610 PAC motif Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00086 78 121 4.3E-8 T 11-11-2016 IPR001610 PAC motif Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 614 7.0E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00387 500 616 5.1E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Pfam PF08447 PAS fold 26 114 1.6E-22 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Gene3D G3DSA:3.30.450.20 5 124 4.7E-30 T 11-11-2016 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SUPERFAMILY SSF55785 242 366 1.57E-17 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SUPERFAMILY SSF52172 650 778 1.18E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00448 650 764 1.9E-41 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Gene3D G3DSA:3.30.450.20 125 242 1.9E-20 T 11-11-2016 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 613 5.0E-9 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 555 5.0E-9 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 594 5.0E-9 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Pfam PF08448 PAS fold 263 369 2.3E-12 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Pfam PF00512 His Kinase A (phospho-acceptor) domain 388 452 3.2E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Gene3D G3DSA:1.20.120.160 759 887 3.2E-17 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 Pfam PF00072 Response regulator receiver domain 652 765 2.2E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SUPERFAMILY SSF47226 747 880 8.11E-13 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SUPERFAMILY SSF55874 442 612 9.17E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SUPERFAMILY SSF55785 119 242 2.62E-19 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SMART SM00388 388 453 3.8E-23 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 2 127 1.8E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 132 250 8.8E-20 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 259 375 3.1E-18 T 11-11-2016 IPR000014 PAS domain Gferi_RS20675 fa866c5829692e247dd5bdc12f84e9de 893 SUPERFAMILY SSF47384 373 454 2.16E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 TIGRFAM TIGR02068 cya_phycin_syn: cyanophycin synthetase 2 864 0.0 T 11-11-2016 IPR011810 Cyanophycin synthetase GO:0005524|GO:0009059|GO:0016874 MetaCyc: PWY-7052 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 Gene3D G3DSA:3.40.1190.10 476 714 8.8E-42 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 Pfam PF02875 Mur ligase family, glutamate ligase domain 721 795 9.0E-10 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 Gene3D G3DSA:3.30.470.20 393 469 7.2E-26 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 Gene3D G3DSA:3.30.470.20 208 330 7.2E-26 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 SUPERFAMILY SSF53623 443 733 3.66E-48 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 Pfam PF08245 Mur ligase middle domain 485 696 1.4E-31 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 Gene3D G3DSA:3.90.190.20 723 864 3.5E-23 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 SUPERFAMILY SSF56059 376 455 2.19E-36 T 11-11-2016 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 SUPERFAMILY SSF56059 214 324 2.19E-36 T 11-11-2016 Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 Pfam PF08443 RimK-like ATP-grasp domain 386 470 2.3E-4 T 11-11-2016 IPR013651 ATP-grasp fold, RimK-type Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 Pfam PF08443 RimK-like ATP-grasp domain 214 316 2.7E-10 T 11-11-2016 IPR013651 ATP-grasp fold, RimK-type Gferi_RS05835 c3c3e9fe4c71bb7d64a5189c41ae99d0 878 SUPERFAMILY SSF53244 721 859 2.38E-23 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS10525 4e29c71f6c4707e3a7000586c01f8c91 262 Gene3D G3DSA:3.40.50.620 2 261 1.1E-99 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS10525 4e29c71f6c4707e3a7000586c01f8c91 262 SMART SM00893 22 214 4.2E-67 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS10525 4e29c71f6c4707e3a7000586c01f8c91 262 SUPERFAMILY SSF52402 2 257 1.47E-82 T 11-11-2016 Gferi_RS10525 4e29c71f6c4707e3a7000586c01f8c91 262 Pfam PF01012 Electron transfer flavoprotein domain 23 209 8.3E-52 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS10525 4e29c71f6c4707e3a7000586c01f8c91 262 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 157 177 - T 11-11-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105 Gferi_RS10525 4e29c71f6c4707e3a7000586c01f8c91 262 PIRSF PIRSF000090 1 262 1.1E-99 T 11-11-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105 Gferi_RS26520 d5cb9ff9a5d6c3378402b7fafa265658 561 Pfam PF14470 Bacterial PH domain 399 505 1.3E-9 T 11-11-2016 Gferi_RS26520 d5cb9ff9a5d6c3378402b7fafa265658 561 Pfam PF09851 Short C-terminal domain 531 558 5.4E-8 T 11-11-2016 IPR018649 SHOCT domain Gferi_RS26520 d5cb9ff9a5d6c3378402b7fafa265658 561 Gene3D G3DSA:2.30.29.50 384 457 0.001 T 11-11-2016 IPR012544 Bacterial Pleckstrin homology domain Gferi_RS23045 22020badab2a31f2fa1db8cb74f5495f 117 Pfam PF07238 PilZ domain 3 109 1.2E-8 T 11-11-2016 IPR009875 PilZ domain GO:0035438 Gferi_RS23045 22020badab2a31f2fa1db8cb74f5495f 117 Gene3D G3DSA:2.40.10.220 7 114 2.5E-5 T 11-11-2016 Gferi_RS21505 d0803a1489d2f8378b501ff401f7a7f6 468 PIRSF PIRSF500217 1 468 3.0E-142 T 11-11-2016 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 Gferi_RS21505 d0803a1489d2f8378b501ff401f7a7f6 468 PIRSF PIRSF016636 1 468 1.1E-138 T 11-11-2016 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB Gferi_RS21505 d0803a1489d2f8378b501ff401f7a7f6 468 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 146 377 6.3E-24 T 11-11-2016 IPR004299 Membrane bound O-acyl transferase, MBOAT Gferi_RS16870 b93f38eec99bae371a395120209c8325 501 SUPERFAMILY SSF100950 228 499 9.63E-79 T 11-11-2016 Gferi_RS16870 b93f38eec99bae371a395120209c8325 501 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 323 466 2.7E-40 T 11-11-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Gferi_RS16870 b93f38eec99bae371a395120209c8325 501 Gene3D G3DSA:3.40.1080.10 13 222 1.6E-49 T 11-11-2016 Gferi_RS16870 b93f38eec99bae371a395120209c8325 501 SUPERFAMILY SSF100950 6 226 7.44E-76 T 11-11-2016 Gferi_RS16870 b93f38eec99bae371a395120209c8325 501 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 14 498 4.7E-231 T 11-11-2016 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 Gferi_RS16870 b93f38eec99bae371a395120209c8325 501 Gene3D G3DSA:3.40.810.20 232 493 5.5E-69 T 11-11-2016 Gferi_RS16870 b93f38eec99bae371a395120209c8325 501 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 10 218 1.9E-37 T 11-11-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 SUPERFAMILY SSF69189 274 365 2.55E-17 T 11-11-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 Gene3D G3DSA:2.60.410.10 282 370 1.4E-19 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 29 262 2.2E-75 T 11-11-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 Gene3D G3DSA:3.40.710.10 12 280 1.2E-95 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 282 370 2.0E-17 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 SUPERFAMILY SSF56601 4 281 7.74E-79 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 SMART SM00936 282 372 2.3E-21 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 3.6E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 61 72 3.6E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS00165 6ae9f5a4009d4b08c5437138712bb494 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 3.6E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 342 532 3.0E-31 T 11-11-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 442 450 - T 11-11-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 SUPERFAMILY SSF52540 233 326 4.24E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 SUPERFAMILY SSF52540 52 202 4.24E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 Gene3D G3DSA:1.10.8.60 253 318 4.3E-7 T 11-11-2016 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 469 488 1.3E-28 T 11-11-2016 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 439 458 1.3E-28 T 11-11-2016 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 350 366 1.3E-28 T 11-11-2016 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 95 114 1.3E-28 T 11-11-2016 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 492 510 1.3E-28 T 11-11-2016 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 SMART SM00382 87 265 8.3E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 SUPERFAMILY SSF54211 348 532 1.25E-41 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 91 263 1.2E-16 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 Gene3D G3DSA:3.30.230.10 346 532 3.2E-48 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 Gene3D G3DSA:3.40.50.300 62 252 2.7E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09265 e5c361cbb6e7570c3df1135137e706ce 563 TIGRFAM TIGR02902 spore_lonB: ATP-dependent protease LonB 4 532 2.6E-265 T 11-11-2016 IPR014251 Sporulation protease LonB Gferi_RS10870 08183e166f487ba0ebed63956e5932f3 942 Pfam PF09992 Phosphodiester glycosidase 218 385 5.4E-32 T 11-11-2016 IPR018711 Phosphodiester glycosidase Gferi_RS21320 335f78d61059e49caa8ce26f369f6e1d 108 SUPERFAMILY SSF46785 5 104 1.61E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21320 335f78d61059e49caa8ce26f369f6e1d 108 Pfam PF03551 Transcriptional regulator PadR-like family 16 87 3.4E-22 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS21320 335f78d61059e49caa8ce26f369f6e1d 108 Gene3D G3DSA:1.10.10.10 5 106 1.1E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 258 1.4E-51 T 11-11-2016 Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 Gene3D G3DSA:3.40.50.720 1 259 1.2E-67 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.1E-27 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-27 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.1E-27 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.1E-27 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.1E-27 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.1E-27 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS09785 5a4147182e05ce6f0af7c0eb7be87cad 262 SUPERFAMILY SSF51735 6 259 5.33E-68 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09035 ba565c2fa796e8094c27a7e4dbd2df81 379 Gene3D G3DSA:1.20.1600.10 99 187 5.5E-5 T 11-11-2016 Gferi_RS09035 ba565c2fa796e8094c27a7e4dbd2df81 379 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 53 294 3.2E-30 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS09035 ba565c2fa796e8094c27a7e4dbd2df81 379 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 374 5.6E-62 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 Gferi_RS09035 ba565c2fa796e8094c27a7e4dbd2df81 379 SUPERFAMILY SSF111369 57 299 1.01E-30 T 11-11-2016 Gferi_RS09035 ba565c2fa796e8094c27a7e4dbd2df81 379 Gene3D G3DSA:2.40.50.100 188 221 1.8E-14 T 11-11-2016 Gferi_RS09035 ba565c2fa796e8094c27a7e4dbd2df81 379 Gene3D G3DSA:2.40.50.100 68 98 1.8E-14 T 11-11-2016 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 SUPERFAMILY SSF81271 280 361 1.87E-34 T 11-11-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 SUPERFAMILY SSF52540 1 302 3.67E-87 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 2 364 1.1E-155 T 11-11-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 PIRSF PIRSF006641 1 364 5.9E-159 T 11-11-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 Pfam PF06071 Protein of unknown function (DUF933) 280 363 2.5E-38 T 11-11-2016 IPR013029 Domain of unknown function DUF933 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 1 364 44.921 T 11-11-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 Gene3D G3DSA:3.10.20.30 268 364 1.9E-47 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 Pfam PF01926 50S ribosome-binding GTPase 3 113 1.6E-22 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 3 23 1.7E-35 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 68 83 1.7E-35 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 85 103 1.7E-35 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 24 42 1.7E-35 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 Gene3D G3DSA:1.10.150.300 130 197 9.7E-26 T 11-11-2016 IPR023192 TGS-like domain Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 Gene3D G3DSA:3.40.50.300 198 267 2.2E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02025 c945f66b0182770a50449500ac7ac526 364 Gene3D G3DSA:3.40.50.300 2 129 2.2E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00095 72a5bddbd3b20a7a2c9a04e9a30de8d3 189 Pfam PF06962 Putative rRNA methylase 51 186 1.2E-53 T 11-11-2016 IPR010719 Putative rRNA methylase Gferi_RS00095 72a5bddbd3b20a7a2c9a04e9a30de8d3 189 Gene3D G3DSA:3.40.50.150 21 150 1.1E-17 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS00095 72a5bddbd3b20a7a2c9a04e9a30de8d3 189 SUPERFAMILY SSF53335 21 162 5.0E-22 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS05150 ff7060ca0ad5be461c96451721b65d5f 166 Gene3D G3DSA:3.40.630.30 7 163 4.2E-20 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS05150 ff7060ca0ad5be461c96451721b65d5f 166 SUPERFAMILY SSF55729 10 152 3.38E-20 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS05150 ff7060ca0ad5be461c96451721b65d5f 166 Pfam PF13673 Acetyltransferase (GNAT) domain 59 153 7.2E-7 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 SMART SM00388 243 307 3.6E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 SUPERFAMILY SSF55874 297 461 7.47E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 SMART SM00387 351 463 2.1E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 Gene3D G3DSA:1.10.287.130 234 292 5.4E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 SMART SM00304 189 242 0.0027 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 245 306 5.4E-8 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 461 2.5E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 Pfam PF00672 HAMP domain 171 238 3.4E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 7.0E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 7.0E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 7.0E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 416 7.0E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 SUPERFAMILY SSF47384 226 307 1.61E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06055 b18613087e7422dfa77da48ad48cf603 464 Gene3D G3DSA:3.30.565.10 293 462 5.3E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16000 0f65701a99908c24e450f67008dc60e1 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 3.9E-15 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS16000 0f65701a99908c24e450f67008dc60e1 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.1E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS16000 0f65701a99908c24e450f67008dc60e1 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.1E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS16000 0f65701a99908c24e450f67008dc60e1 200 SUPERFAMILY SSF46689 4 76 5.49E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS16000 0f65701a99908c24e450f67008dc60e1 200 Gene3D G3DSA:1.10.357.10 4 190 1.3E-24 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 ProSitePatterns PS00201 Flavodoxin signature. 255 271 - T 11-11-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 Pfam PF00753 Metallo-beta-lactamase superfamily 37 170 1.1E-8 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 Pfam PF00258 Flavodoxin 255 319 3.3E-6 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 SMART SM00849 35 226 4.1E-27 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 Gene3D G3DSA:3.60.15.10 3 245 1.6E-89 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 SUPERFAMILY SSF56281 5 281 1.89E-53 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 Gene3D G3DSA:3.40.50.360 250 393 3.5E-41 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 SUPERFAMILY SSF52218 252 397 8.38E-31 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS03335 5fb18c13eb3c527813b8139beb21c2a4 398 PIRSF PIRSF005243 1 398 4.9E-132 T 11-11-2016 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 SUPERFAMILY SSF54909 61 145 1.02E-10 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 Gene3D G3DSA:3.30.70.920 54 145 1.4E-14 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 Gene3D G3DSA:1.10.10.10 1 52 3.8E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 SUPERFAMILY SSF46785 1 61 1.61E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 3.0E-13 T 11-11-2016 Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 Pfam PF01037 Lrp/AsnC ligand binding domain 92 141 3.8E-8 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 SMART SM00344 1 111 2.7E-27 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.8E-10 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.8E-10 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS09985 f0cb19ec8aae6e648cc83987671b69ad 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.8E-10 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 304 1.9E-56 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 Gene3D G3DSA:3.50.50.60 113 313 2.5E-54 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 Gene3D G3DSA:3.30.390.30 333 443 5.5E-39 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 SUPERFAMILY SSF55424 320 442 1.89E-29 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 Gene3D G3DSA:3.40.250.10 458 542 3.7E-25 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 SUPERFAMILY SSF52821 431 541 8.77E-27 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 Pfam PF00581 Rhodanese-like domain 461 539 4.2E-13 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 281 4.7E-22 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 4.7E-22 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 4.7E-22 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 4.7E-22 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 4.7E-22 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 SMART SM00450 449 543 3.0E-19 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 329 429 1.6E-12 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 274 281 2.7E-16 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 2.7E-16 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 384 399 2.7E-16 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 177 2.7E-16 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 2.7E-16 T 11-11-2016 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 SUPERFAMILY SSF51905 1 314 1.81E-41 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS16090 ffb970b9d6f67190ece475b91ed689ea 562 Gene3D G3DSA:3.50.50.60 1 112 1.6E-18 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS01650 3b413c7edbdc67b33bc858668b02245f 525 SMART SM01121 218 525 4.3E-164 T 11-11-2016 IPR033470 Uncharacterised protein, DhaK domain Gferi_RS01650 3b413c7edbdc67b33bc858668b02245f 525 Pfam PF13684 Dihydroxyacetone kinase family 218 525 9.2E-121 T 11-11-2016 IPR033470 Uncharacterised protein, DhaK domain Gferi_RS01650 3b413c7edbdc67b33bc858668b02245f 525 TIGRFAM TIGR03599 YloV: DAK2 domain fusion protein YloV 1 525 3.0E-203 T 11-11-2016 IPR019986 DAK2 domain-containing protein YloV Gferi_RS01650 3b413c7edbdc67b33bc858668b02245f 525 SUPERFAMILY SSF101473 1 190 1.23E-43 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS01650 3b413c7edbdc67b33bc858668b02245f 525 Pfam PF02734 DAK2 domain 23 187 4.8E-44 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS01650 3b413c7edbdc67b33bc858668b02245f 525 SMART SM01120 23 188 2.0E-66 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 SUPERFAMILY SSF52540 236 472 2.0E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 Pfam PF00005 ABC transporter 14 163 3.2E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 Pfam PF00005 ABC transporter 265 419 3.5E-17 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 ProSitePatterns PS00211 ABC transporters family signature. 392 406 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 Gene3D G3DSA:3.40.50.300 3 226 5.1E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 SUPERFAMILY SSF52540 3 224 1.66E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 SMART SM00382 273 468 0.37 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 SMART SM00382 23 211 1.9E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14925 4d2076790c6c148abed1734dda2c14de 491 Gene3D G3DSA:3.40.50.300 241 482 7.2E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 SUPERFAMILY SSF52540 236 472 2.0E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 Pfam PF00005 ABC transporter 14 163 3.2E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 Pfam PF00005 ABC transporter 265 419 3.5E-17 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 ProSitePatterns PS00211 ABC transporters family signature. 392 406 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 Gene3D G3DSA:3.40.50.300 3 226 5.1E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 SUPERFAMILY SSF52540 3 224 1.66E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 SMART SM00382 273 468 0.37 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 SMART SM00382 23 211 1.9E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19820 4d2076790c6c148abed1734dda2c14de 491 Gene3D G3DSA:3.40.50.300 241 482 7.2E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17055 57aec6c14d3123c1348a139de35305d8 171 SUPERFAMILY SSF47240 1 161 2.14E-56 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS17055 57aec6c14d3123c1348a139de35305d8 171 Pfam PF00210 Ferritin-like domain 9 144 9.3E-40 T 11-11-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Gferi_RS17055 57aec6c14d3123c1348a139de35305d8 171 Gene3D G3DSA:1.20.1260.10 1 166 5.7E-58 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS13745 e038513a4f703c9dabc38f96a178b02c 504 Gene3D G3DSA:1.10.390.10 363 500 1.6E-20 T 11-11-2016 Gferi_RS13745 e038513a4f703c9dabc38f96a178b02c 504 Pfam PF01433 Peptidase family M1 258 442 4.4E-15 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Gferi_RS13745 e038513a4f703c9dabc38f96a178b02c 504 SUPERFAMILY SSF55486 286 500 4.3E-47 T 11-11-2016 Gferi_RS22875 a3cae7f7761cc20ef824bc32808340eb 170 PIRSF PIRSF000216 2 170 2.1E-55 T 11-11-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS22875 a3cae7f7761cc20ef824bc32808340eb 170 Gene3D G3DSA:3.40.30.10 89 167 1.5E-15 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS22875 a3cae7f7761cc20ef824bc32808340eb 170 SUPERFAMILY SSF52833 19 169 1.12E-51 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS22875 a3cae7f7761cc20ef824bc32808340eb 170 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 168 8.4E-51 T 11-11-2016 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 105 152 4.6E-11 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 858 905 1.1E-11 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 699 746 2.0E-15 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 649 696 6.0E-14 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 205 252 2.5E-10 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 255 302 3.7E-9 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 305 352 1.3E-11 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 749 805 2.4E-9 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 808 855 2.0E-11 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 908 964 3.2E-8 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00415 Regulator of chromosome condensation (RCC1) repeat 155 202 3.5E-14 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 636 646 - T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 SUPERFAMILY SSF50985 633 838 1.7E-49 T 11-11-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF12733 Cadherin-like beta sandwich domain 544 622 8.0E-17 T 11-11-2016 IPR025883 Cadherin-like beta sandwich domain Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF12733 Cadherin-like beta sandwich domain 397 486 8.0E-11 T 11-11-2016 IPR025883 Cadherin-like beta sandwich domain Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 795 805 - T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 192 202 - T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 92 102 - T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 SUPERFAMILY SSF50985 46 235 2.09E-55 T 11-11-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 686 696 - T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 SUPERFAMILY SSF50985 188 385 6.93E-59 T 11-11-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 651 667 5.3E-21 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 811 825 5.3E-21 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 963 984 5.3E-21 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 683 696 5.3E-21 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 795 811 5.3E-21 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 PRINTS PR00633 Chromosome condensation regulator RCC1 signature 702 718 5.3E-21 T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Gene3D G3DSA:2.130.10.30 682 994 7.3E-76 T 11-11-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Gene3D G3DSA:2.130.10.30 633 681 1.1E-11 T 11-11-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 342 352 - T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 SUPERFAMILY SSF50985 787 995 1.26E-57 T 11-11-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Gene3D G3DSA:2.130.10.30 47 385 3.7E-106 T 11-11-2016 IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00395 S-layer homology domain 1456 1497 1.7E-7 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00395 S-layer homology domain 1330 1371 5.4E-11 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 Pfam PF00395 S-layer homology domain 1390 1433 8.5E-15 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS20090 322bacebf627610a1b67cf3d0b0485e8 1513 ProSitePatterns PS00626 Regulator of chromosome condensation (RCC1) signature 2. 242 252 - T 11-11-2016 IPR000408 Regulator of chromosome condensation, RCC1 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 Gene3D G3DSA:3.40.50.620 1 184 3.4E-111 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 Gene3D G3DSA:3.40.50.620 337 557 3.4E-111 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 Gene3D G3DSA:1.10.730.10 568 709 9.7E-35 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 563 3.6E-112 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 Gene3D G3DSA:3.90.740.10 193 330 1.5E-34 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 6.8E-15 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 PRINTS PR00986 Valyl-tRNA synthetase signature 477 495 6.8E-15 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 PRINTS PR00986 Valyl-tRNA synthetase signature 224 241 6.8E-15 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 PRINTS PR00986 Valyl-tRNA synthetase signature 446 467 6.8E-15 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 PRINTS PR00986 Valyl-tRNA synthetase signature 339 352 6.8E-15 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 789 1.5E-221 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 SUPERFAMILY SSF47323 577 788 5.79E-41 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 SUPERFAMILY SSF50677 192 334 5.89E-41 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 SUPERFAMILY SSF52374 1 188 2.93E-114 T 11-11-2016 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 SUPERFAMILY SSF52374 334 569 2.93E-114 T 11-11-2016 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 Pfam PF08264 Anticodon-binding domain of tRNA 605 754 1.2E-28 T 11-11-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Gferi_RS08085 3a26905a55d1261a8854f295bde0dc0a 790 Hamap MF_02005 Valine--tRNA ligase [valS]. 1 786 26.428 T 11-11-2016 IPR022874 Valine-tRNA ligase, type 2 GO:0004832 KEGG: 00970+6.1.1.9 Gferi_RS02535 daeec428c2a6f8b7648e30a08381359c 357 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 63 344 8.2E-93 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS02535 daeec428c2a6f8b7648e30a08381359c 357 PIRSF PIRSF006470 29 357 3.6E-104 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS02535 daeec428c2a6f8b7648e30a08381359c 357 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 66 312 2.0E-74 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS27120 d7af7ee53c17cc08b1dd06c148c559cd 169 SUPERFAMILY SSF56784 10 140 4.58E-24 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS27120 d7af7ee53c17cc08b1dd06c148c559cd 169 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 29 138 4.0E-17 T 11-11-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Gferi_RS27120 d7af7ee53c17cc08b1dd06c148c559cd 169 Pfam PF13419 Haloacid dehalogenase-like hydrolase 16 136 1.5E-8 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS27120 d7af7ee53c17cc08b1dd06c148c559cd 169 Gene3D G3DSA:3.40.50.1000 24 150 2.1E-24 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS27120 d7af7ee53c17cc08b1dd06c148c559cd 169 TIGRFAM TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA 6 163 6.8E-44 T 11-11-2016 IPR010021 HAD-superfamily phosphatase, YqeG-like Gferi_RS05850 f822ad8970274f79e91f7396a3c0e993 370 Pfam PF13450 NAD(P)-binding Rossmann-like domain 5 36 1.4E-6 T 11-11-2016 Gferi_RS05850 f822ad8970274f79e91f7396a3c0e993 370 SUPERFAMILY SSF51905 1 152 1.18E-16 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05850 f822ad8970274f79e91f7396a3c0e993 370 SUPERFAMILY SSF51905 250 301 1.18E-16 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05850 f822ad8970274f79e91f7396a3c0e993 370 Gene3D G3DSA:3.50.50.60 1 82 7.5E-15 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05850 f822ad8970274f79e91f7396a3c0e993 370 Gene3D G3DSA:3.50.50.60 127 142 7.5E-15 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05850 f822ad8970274f79e91f7396a3c0e993 370 Gene3D G3DSA:3.30.9.10 151 287 4.3E-6 T 11-11-2016 Gferi_RS06310 bf30e4024ed7a24e4305b0941d6da2cc 123 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 3 123 28.962 T 11-11-2016 IPR002930 Glycine cleavage system H-protein Gferi_RS06310 bf30e4024ed7a24e4305b0941d6da2cc 123 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 122 3.9E-48 T 11-11-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Gferi_RS06310 bf30e4024ed7a24e4305b0941d6da2cc 123 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 46 75 - T 11-11-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Gferi_RS06310 bf30e4024ed7a24e4305b0941d6da2cc 123 Gene3D G3DSA:2.40.50.100 5 122 1.6E-46 T 11-11-2016 Gferi_RS06310 bf30e4024ed7a24e4305b0941d6da2cc 123 Pfam PF01597 Glycine cleavage H-protein 6 122 5.6E-44 T 11-11-2016 IPR002930 Glycine cleavage system H-protein Gferi_RS06310 bf30e4024ed7a24e4305b0941d6da2cc 123 SUPERFAMILY SSF51230 2 122 1.36E-39 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS20215 cb320d78f4d212cf387a51ebe1b52f5d 216 SUPERFAMILY SSF63380 92 194 3.49E-32 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Gferi_RS20215 cb320d78f4d212cf387a51ebe1b52f5d 216 PIRSF PIRSF000498 1 209 2.2E-77 T 11-11-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20215 cb320d78f4d212cf387a51ebe1b52f5d 216 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 2 194 4.5E-73 T 11-11-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20215 cb320d78f4d212cf387a51ebe1b52f5d 216 Pfam PF00677 Lumazine binding domain 3 86 1.1E-23 T 11-11-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20215 cb320d78f4d212cf387a51ebe1b52f5d 216 Pfam PF00677 Lumazine binding domain 99 182 9.6E-21 T 11-11-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20215 cb320d78f4d212cf387a51ebe1b52f5d 216 Gene3D G3DSA:2.40.30.20 104 194 6.5E-30 T 11-11-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 Gferi_RS20215 cb320d78f4d212cf387a51ebe1b52f5d 216 Gene3D G3DSA:2.40.30.20 6 103 7.0E-34 T 11-11-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 Gferi_RS20215 cb320d78f4d212cf387a51ebe1b52f5d 216 SUPERFAMILY SSF63380 2 92 3.74E-25 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Gene3D G3DSA:2.30.30.40 537 558 2.5E-15 T 11-11-2016 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Gene3D G3DSA:2.30.30.40 627 676 2.5E-15 T 11-11-2016 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SMART SM00260 529 677 2.2E-32 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SUPERFAMILY SSF47384 283 350 1.41E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SUPERFAMILY SSF50341 536 676 5.75E-29 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Pfam PF01584 CheW-like domain 541 678 2.3E-23 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SMART SM00073 1 99 3.8E-25 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Gene3D G3DSA:2.40.50.180 571 626 3.3E-12 T 11-11-2016 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 515 2.0E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 453 2.0E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 2.0E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 491 2.0E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SUPERFAMILY SSF47226 3 122 1.19E-26 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Pfam PF01627 Hpt domain 6 96 7.0E-17 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 283 348 2.4E-16 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 397 536 6.1E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SMART SM01231 281 349 1.9E-13 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Gene3D G3DSA:3.30.70.1110 169 251 4.5E-16 T 11-11-2016 IPR010808 Signal transduction histidine kinase, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Gene3D G3DSA:1.20.120.160 2 129 7.2E-35 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Gene3D G3DSA:1.10.287.560 282 350 7.1E-17 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SUPERFAMILY SSF55052 169 250 7.59E-11 T 11-11-2016 IPR015162 CheY binding Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SUPERFAMILY SSF55874 351 535 2.49E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 SMART SM00387 394 537 4.9E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Pfam PF07194 P2 response regulator binding domain 170 248 3.2E-14 T 11-11-2016 IPR010808 Signal transduction histidine kinase, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 Gferi_RS09340 f43c38cef56aadc01001f4f03ec55629 682 Gene3D G3DSA:3.30.565.10 351 536 1.6E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15865 254ae4f535dc11b1942ffc8db19879cb 455 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 445 4.8E-198 T 11-11-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Gferi_RS15865 254ae4f535dc11b1942ffc8db19879cb 455 Gene3D G3DSA:2.30.170.30 1 53 2.2E-22 T 11-11-2016 Gferi_RS15865 254ae4f535dc11b1942ffc8db19879cb 455 Gene3D G3DSA:3.20.20.70 143 454 7.3E-144 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS15865 254ae4f535dc11b1942ffc8db19879cb 455 Gene3D G3DSA:1.10.220.70 55 141 4.5E-35 T 11-11-2016 Gferi_RS15865 254ae4f535dc11b1942ffc8db19879cb 455 PIRSF PIRSF018788 1 455 1.5E-209 T 11-11-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Gferi_RS13865 cf9f8e8e9014e5c72008fa26cb33c6b4 270 SUPERFAMILY SSF143422 13 126 3.79E-28 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS13865 cf9f8e8e9014e5c72008fa26cb33c6b4 270 Pfam PF01797 Transposase IS200 like 13 123 1.9E-18 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS13865 cf9f8e8e9014e5c72008fa26cb33c6b4 270 SMART SM01321 10 123 8.2E-38 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS13865 cf9f8e8e9014e5c72008fa26cb33c6b4 270 Gene3D G3DSA:3.30.70.1290 13 126 2.5E-16 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS08305 ad6bba191f9020e141d771ed9265b8f3 334 SUPERFAMILY SSF53850 133 295 3.38E-11 T 11-11-2016 Gferi_RS08305 ad6bba191f9020e141d771ed9265b8f3 334 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 63 321 2.1E-37 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS08305 ad6bba191f9020e141d771ed9265b8f3 334 PIRSF PIRSF017082 3 332 2.5E-78 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS06660 abcd0f312ee8a31378c391000dc86420 322 Gene3D G3DSA:1.10.10.60 63 121 4.4E-21 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06660 abcd0f312ee8a31378c391000dc86420 322 Gene3D G3DSA:1.10.10.60 5 62 9.0E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06660 abcd0f312ee8a31378c391000dc86420 322 SMART SM00342 26 109 1.0E-27 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS06660 abcd0f312ee8a31378c391000dc86420 322 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 78 93 7.3E-8 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS06660 abcd0f312ee8a31378c391000dc86420 322 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 93 109 7.3E-8 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS06660 abcd0f312ee8a31378c391000dc86420 322 Pfam PF12833 Helix-turn-helix domain 32 110 1.8E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS06660 abcd0f312ee8a31378c391000dc86420 322 SUPERFAMILY SSF46689 63 115 3.4E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS02335 a11aa306586cd81fee6088c943aa62a9 318 SUPERFAMILY SSF53335 78 307 1.92E-43 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS02335 a11aa306586cd81fee6088c943aa62a9 318 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 310 6.1E-96 T 11-11-2016 Gferi_RS02335 a11aa306586cd81fee6088c943aa62a9 318 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 311 34.902 T 11-11-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Gferi_RS02335 a11aa306586cd81fee6088c943aa62a9 318 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 304 1.2E-75 T 11-11-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Gferi_RS02335 a11aa306586cd81fee6088c943aa62a9 318 Gene3D G3DSA:3.40.50.150 114 305 2.1E-43 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS02335 a11aa306586cd81fee6088c943aa62a9 318 PIRSF PIRSF000401 1 313 6.4E-105 T 11-11-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 SUPERFAMILY SSF52954 358 460 5.89E-33 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 6 244 6.2E-93 T 11-11-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 Pfam PF03129 Anticodon binding domain 371 458 1.2E-22 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 326 338 2.8E-53 T 11-11-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 26 40 2.8E-53 T 11-11-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 406 425 2.8E-53 T 11-11-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 149 161 2.8E-53 T 11-11-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 202 219 2.8E-53 T 11-11-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 219 229 2.8E-53 T 11-11-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 PRINTS PR01043 Glycyl-tRNA synthetase signature 170 187 2.8E-53 T 11-11-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 163 302 4.4E-8 T 11-11-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 SUPERFAMILY SSF55681 6 374 1.53E-127 T 11-11-2016 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 4 461 52.071 T 11-11-2016 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 Gene3D G3DSA:3.40.50.800 367 460 6.0E-38 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 Gene3D G3DSA:3.30.930.10 8 92 3.5E-148 T 11-11-2016 Gferi_RS02225 7dfb92b3d0ee75331a5dba063e69f386 462 Gene3D G3DSA:3.30.930.10 135 366 3.5E-148 T 11-11-2016 Gferi_RS03050 2ce92b3359b0c43898047be60f7f1359 141 TIGRFAM TIGR02838 spore_V_AC: stage V sporulation protein AC 2 139 2.0E-55 T 11-11-2016 IPR014203 Sporulation stage V, protein AC Gferi_RS03050 2ce92b3359b0c43898047be60f7f1359 141 Pfam PF03862 SpoVA protein 19 135 3.0E-38 T 11-11-2016 IPR005562 SpoVA Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 SUPERFAMILY SSF46689 59 109 5.82E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 Pfam PF12833 Helix-turn-helix domain 29 105 3.1E-18 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 Gene3D G3DSA:1.10.10.60 5 58 2.7E-20 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 Pfam PF14526 Integron-associated effector binding protein 139 290 5.2E-11 T 11-11-2016 IPR029441 Integron-associated effector binding protein Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 SUPERFAMILY SSF46689 7 56 7.88E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 SMART SM00342 22 105 1.1E-28 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 SMART SM00871 131 291 4.6E-9 T 11-11-2016 IPR010499 Bacterial transcription activator, effector binding Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 Gene3D G3DSA:3.20.80.10 131 291 1.1E-13 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 SUPERFAMILY SSF55136 158 292 2.79E-15 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 56 101 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS10160 a1868a2cf414ec8b059e2786518d9340 297 Gene3D G3DSA:1.10.10.60 59 118 7.5E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS02100 d0ab3b0fc15d3821406f6761d4e5821f 242 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS02100 d0ab3b0fc15d3821406f6761d4e5821f 242 Gene3D G3DSA:3.40.50.300 2 229 1.2E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02100 d0ab3b0fc15d3821406f6761d4e5821f 242 PIRSF PIRSF039137 1 234 4.3E-109 T 11-11-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Gferi_RS02100 d0ab3b0fc15d3821406f6761d4e5821f 242 SUPERFAMILY SSF52540 2 232 4.19E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02100 d0ab3b0fc15d3821406f6761d4e5821f 242 SMART SM00382 26 210 2.4E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS02100 d0ab3b0fc15d3821406f6761d4e5821f 242 Pfam PF00005 ABC transporter 17 161 8.8E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 TIGRFAM TIGR04491 reactive_PduG: diol dehydratase reactivase alpha subunit 3 601 0.0 T 11-11-2016 IPR009191 Diol dehydratase-reactivating factor alpha subunit Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 Gene3D G3DSA:3.50.30.70 97 247 9.5E-69 T 11-11-2016 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 Pfam PF08841 Diol dehydratase reactivase ATPase-like domain 275 601 8.9E-166 T 11-11-2016 IPR030994 Diol dehydratase reactivase ATPase-like domain Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 SUPERFAMILY SSF82317 93 254 7.85E-67 T 11-11-2016 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 PIRSF PIRSF011502 1 605 0.0 T 11-11-2016 IPR009191 Diol dehydratase-reactivating factor alpha subunit Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 SUPERFAMILY SSF53067 407 600 7.5E-31 T 11-11-2016 Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 SUPERFAMILY SSF53067 255 403 2.01E-65 T 11-11-2016 Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 SUPERFAMILY SSF53067 1 93 2.01E-65 T 11-11-2016 Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 Gene3D G3DSA:3.30.420.40 471 602 1.2E-35 T 11-11-2016 Gferi_RS26040 7b1a52aec8e96cd2aea5eb976e7dda0e 606 Gene3D G3DSA:3.30.420.40 298 444 4.7E-41 T 11-11-2016 Gferi_RS01260 b66e7049909bc49723ec480847318976 108 Pfam PF01909 Nucleotidyltransferase domain 8 89 5.1E-12 T 11-11-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Gferi_RS01260 b66e7049909bc49723ec480847318976 108 SUPERFAMILY SSF81301 3 107 5.73E-18 T 11-11-2016 Gferi_RS01260 b66e7049909bc49723ec480847318976 108 Gene3D G3DSA:3.30.460.10 3 107 3.1E-19 T 11-11-2016 Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 SMART SM00138 114 377 5.0E-37 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 Gene3D G3DSA:3.40.50.150 179 368 1.6E-53 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 Pfam PF03705 CheR methyltransferase, all-alpha domain 119 163 2.2E-6 T 11-11-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 SUPERFAMILY SSF53335 180 359 5.85E-42 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 Pfam PF01739 CheR methyltransferase, SAM binding domain 180 364 3.0E-42 T 11-11-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 PRINTS PR00996 Glutamate methyltransferase family signature 315 329 4.1E-26 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 PRINTS PR00996 Glutamate methyltransferase family signature 209 229 4.1E-26 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 PRINTS PR00996 Glutamate methyltransferase family signature 334 357 4.1E-26 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 PRINTS PR00996 Glutamate methyltransferase family signature 173 185 4.1E-26 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS15050 69b1c9dc20ad5fb19341f2dc0fefd454 384 PRINTS PR00996 Glutamate methyltransferase family signature 241 257 4.1E-26 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 SMART SM00448 703 816 3.5E-37 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Gene3D G3DSA:3.30.565.10 497 667 9.9E-51 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 SMART SM00387 557 668 4.8E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 PRINTS PR00344 Bacterial sensor protein C-terminal signature 593 607 9.2E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 PRINTS PR00344 Bacterial sensor protein C-terminal signature 611 621 9.2E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 665 9.2E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 PRINTS PR00344 Bacterial sensor protein C-terminal signature 628 646 9.2E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Pfam PF00990 Diguanylate cyclase, GGDEF domain 830 987 3.3E-44 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Pfam PF00512 His Kinase A (phospho-acceptor) domain 444 509 9.8E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 SUPERFAMILY SSF55073 834 990 7.22E-45 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 SUPERFAMILY SSF47384 431 511 9.22E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Gene3D G3DSA:3.30.70.270 831 990 6.4E-50 T 11-11-2016 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 SMART SM00267 819 991 9.3E-54 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 SUPERFAMILY SSF55874 500 667 7.2E-49 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Pfam PF00072 Response regulator receiver domain 705 817 2.1E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 SUPERFAMILY SSF52172 700 827 1.24E-38 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 558 666 4.6E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Gene3D G3DSA:3.40.50.2300 700 827 3.0E-38 T 11-11-2016 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 827 990 7.2E-55 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Gene3D G3DSA:1.10.287.130 435 496 1.8E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 SMART SM00388 443 511 4.7E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22400 36d7e5aec8d8162aa57c65a22aa65cd3 992 Pfam PF07695 7TM diverse intracellular signalling 223 419 2.8E-17 T 11-11-2016 IPR011623 7TM-DISM receptor, extracellular domain, type 1 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 Pfam PF02272 DHHA1 domain 802 872 1.1E-15 T 11-11-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 SMART SM00863 655 698 3.7E-20 T 11-11-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 655 698 5.4E-18 T 11-11-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 73 84 6.1E-28 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 197 208 6.1E-28 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 224 237 6.1E-28 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 6.1E-28 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 6.1E-28 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 SUPERFAMILY SSF55681 4 243 1.51E-94 T 11-11-2016 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 SUPERFAMILY SSF50447 457 554 1.17E-16 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 878 176.971 T 11-11-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 Gene3D G3DSA:3.30.930.10 3 239 2.5E-100 T 11-11-2016 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 856 0.0 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 SUPERFAMILY SSF101353 244 447 5.36E-63 T 11-11-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 SUPERFAMILY SSF55186 554 713 2.22E-50 T 11-11-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 Gferi_RS26855 03434c9b474d82642d0666a0410f1d63 879 Pfam PF01411 tRNA synthetases class II (A) 8 557 5.9E-202 T 11-11-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Gferi_RS22635 37348b5f2c38f95ccc58cff5f65f5bf3 460 Pfam PF03611 PTS system sugar-specific permease component 10 409 1.1E-142 T 11-11-2016 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 Gene3D G3DSA:1.10.286.20 110 154 2.8E-20 T 11-11-2016 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 SUPERFAMILY SSF46934 3 54 9.07E-20 T 11-11-2016 IPR009060 UBA-like GO:0005515 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 Hamap MF_00050 Elongation factor Ts [tsf]. 1 213 56.888 T 11-11-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 Pfam PF00889 Elongation factor TS 71 97 5.8E-9 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 Pfam PF00889 Elongation factor TS 91 196 4.4E-37 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 91 214 8.3E-44 T 11-11-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 95 5.5E-39 T 11-11-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 Gene3D G3DSA:3.30.479.20 56 109 8.3E-39 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 Gene3D G3DSA:3.30.479.20 155 199 8.3E-39 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 11-11-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 SUPERFAMILY SSF54713 59 214 1.1E-54 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Gferi_RS00795 c4b3896b649ae1e8fe1ce12b1dfff796 215 Gene3D G3DSA:1.10.8.10 1 54 4.1E-28 T 11-11-2016 Gferi_RS26265 f1339b6da2bfccd156fa3714d0ebe6d2 192 PIRSF PIRSF006305 1 191 2.0E-53 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 Gferi_RS26265 f1339b6da2bfccd156fa3714d0ebe6d2 192 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 183 1.2E-46 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 Gferi_RS26265 f1339b6da2bfccd156fa3714d0ebe6d2 192 Pfam PF02545 Maf-like protein 3 185 3.8E-52 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 Gferi_RS26265 f1339b6da2bfccd156fa3714d0ebe6d2 192 SUPERFAMILY SSF52972 3 185 4.51E-56 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like Gferi_RS26265 f1339b6da2bfccd156fa3714d0ebe6d2 192 Gene3D G3DSA:3.90.950.10 3 186 9.8E-59 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like Gferi_RS26265 f1339b6da2bfccd156fa3714d0ebe6d2 192 Hamap MF_00528 Septum formation protein Maf [maf]. 3 190 26.579 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 Gferi_RS12420 f373ad70be23d7139dd04cb4fe4e1d1e 164 Pfam PF03830 PTS system sorbose subfamily IIB component 5 149 5.5E-39 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 Gferi_RS12420 f373ad70be23d7139dd04cb4fe4e1d1e 164 SUPERFAMILY SSF52728 4 160 2.62E-36 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 Gferi_RS12420 f373ad70be23d7139dd04cb4fe4e1d1e 164 Gene3D G3DSA:3.40.35.10 4 158 7.7E-41 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 Pfam PF08455 Bacterial SNF2 helicase associated 230 608 5.3E-102 T 11-11-2016 IPR013663 Helicase, SWF/SNF/SWI type, bacterial Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 SUPERFAMILY SSF52540 568 826 2.42E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 SUPERFAMILY SSF52540 828 1076 5.74E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 SMART SM00490 938 1020 3.8E-25 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 Gene3D G3DSA:3.40.50.300 601 784 3.8E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 Pfam PF00271 Helicase conserved C-terminal domain 909 1020 7.7E-21 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 Gene3D G3DSA:3.40.50.300 906 1056 1.2E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 SMART SM00487 611 797 1.3E-28 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS25550 c7952f600f43e40d2ae240c2f03f39c1 1077 Pfam PF00176 SNF2 family N-terminal domain 633 898 5.2E-56 T 11-11-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 Gferi_RS06870 88dc195651e0bd572daca8a3aa98a0fb 412 Gene3D G3DSA:3.40.630.40 2 183 2.7E-37 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS06870 88dc195651e0bd572daca8a3aa98a0fb 412 SMART SM00646 61 180 8.9E-11 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS06870 88dc195651e0bd572daca8a3aa98a0fb 412 SUPERFAMILY SSF53187 1 183 7.85E-32 T 11-11-2016 Gferi_RS06870 88dc195651e0bd572daca8a3aa98a0fb 412 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 3 180 4.0E-34 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS06870 88dc195651e0bd572daca8a3aa98a0fb 412 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 221 298 2.3E-11 T 11-11-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 40.586 T 11-11-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 Pfam PF01380 SIS domain 291 416 2.7E-34 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 Pfam PF01380 SIS domain 465 591 3.1E-23 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 SUPERFAMILY SSF56235 2 236 3.43E-74 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 Gene3D G3DSA:3.40.50.10490 244 442 4.1E-78 T 11-11-2016 Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 Gene3D G3DSA:3.60.20.10 2 240 7.5E-80 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 Pfam PF13522 Glutamine amidotransferase domain 61 183 1.3E-21 T 11-11-2016 Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 SUPERFAMILY SSF53697 245 609 8.16E-110 T 11-11-2016 Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 3.0E-248 T 11-11-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Gferi_RS18890 5fc10f7c4a3bc196fc78cbe2cfc2b4d8 609 Gene3D G3DSA:3.40.50.10490 443 609 1.2E-61 T 11-11-2016 Gferi_RS22515 f0da3deb5a0855e2592eee11ab2d384b 319 Pfam PF00005 ABC transporter 29 179 3.6E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22515 f0da3deb5a0855e2592eee11ab2d384b 319 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22515 f0da3deb5a0855e2592eee11ab2d384b 319 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 230 317 7.5E-26 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS22515 f0da3deb5a0855e2592eee11ab2d384b 319 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 231 298 1.4E-16 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS22515 f0da3deb5a0855e2592eee11ab2d384b 319 SUPERFAMILY SSF52540 8 251 1.56E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22515 f0da3deb5a0855e2592eee11ab2d384b 319 Gene3D G3DSA:3.40.50.300 4 255 3.7E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22515 f0da3deb5a0855e2592eee11ab2d384b 319 SMART SM00382 37 237 8.2E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Gene3D G3DSA:2.40.50.140 211 295 4.0E-5 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 399 615 1.5E-42 T 11-11-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 TIGRFAM TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type 214 1414 0.0 T 11-11-2016 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 SUPERFAMILY SSF53098 401 854 9.48E-106 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Pfam PF00929 Exonuclease 403 557 1.1E-37 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Pfam PF02811 PHP domain 318 674 8.6E-52 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 SMART SM00479 401 566 4.3E-52 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 802 1214 1.0E-93 T 11-11-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Gene3D G3DSA:1.20.5.140 540 573 2.2E-17 T 11-11-2016 IPR023223 DNA polymerase III/inhibitor IA3, alpha-helix domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Pfam PF11490 DNA polymerase III polC-type N-terminus II 79 190 8.7E-12 T 11-11-2016 IPR024754 DNA polymerase III polC-like, N-terminal domain II KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Gene3D G3DSA:1.10.150.280 1350 1403 1.6E-8 T 11-11-2016 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Hamap MF_00356 DNA polymerase III PolC-type [polC]. 1 1414 380.667 T 11-11-2016 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Gene3D G3DSA:3.30.420.10 401 537 4.9E-47 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Gene3D G3DSA:3.20.20.140 315 400 1.4E-62 T 11-11-2016 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Gene3D G3DSA:3.20.20.140 609 772 1.4E-62 T 11-11-2016 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 SMART SM00481 317 384 3.8E-27 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Pfam PF14579 Helix-hairpin-helix motif 1330 1406 1.8E-9 T 11-11-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS00745 dd7057bd94a6db65c4bc1cee19bfeb01 1414 Pfam PF14480 DNA polymerase III polC-type N-terminus I 7 62 1.9E-6 T 11-11-2016 IPR028112 DNA polymerase III polC-type, N-terminal domain I KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 SMART SM00448 2 116 3.4E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 Gene3D G3DSA:1.10.10.60 425 478 9.2E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 SUPERFAMILY SSF46689 478 528 1.22E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 494 509 1.4E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 509 525 1.4E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 Pfam PF00072 Response regulator receiver domain 5 116 2.3E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 SUPERFAMILY SSF46689 428 476 1.88E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 Gene3D G3DSA:3.40.50.2300 1 133 6.4E-33 T 11-11-2016 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 Gene3D G3DSA:1.10.10.60 479 528 9.0E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 Pfam PF12833 Helix-turn-helix domain 448 526 2.2E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 479 521 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 SUPERFAMILY SSF52172 1 165 1.85E-34 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS14910 c8bb06fe8c471ec3d2c06999261ca2de 534 SMART SM00342 442 525 3.8E-32 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 Pfam PF00072 Response regulator receiver domain 5 112 2.2E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 SUPERFAMILY SSF52540 141 384 6.83E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 Gene3D G3DSA:3.40.50.300 139 314 4.6E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 SMART SM00448 3 114 3.6E-34 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 Gene3D G3DSA:3.40.50.2300 2 125 1.1E-34 T 11-11-2016 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 Pfam PF00158 Sigma-54 interaction domain 141 309 6.6E-66 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 SMART SM00382 162 309 5.1E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 Pfam PF02954 Bacterial regulatory protein, Fis family 421 458 4.3E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 Gene3D G3DSA:1.10.8.60 315 392 2.5E-29 T 11-11-2016 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 Gene3D G3DSA:1.10.10.60 413 458 1.4E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 SUPERFAMILY SSF46689 355 458 4.93E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 166 179 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS13515 0355478d41378d947ffb7692b0872307 460 SUPERFAMILY SSF52172 3 187 2.99E-42 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS07445 8ee41be629cd905d34cfc985e39f4564 334 Pfam PF00586 AIR synthase related protein, N-terminal domain 49 149 9.2E-16 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS07445 8ee41be629cd905d34cfc985e39f4564 334 Gene3D G3DSA:3.30.1330.10 19 151 3.2E-22 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS07445 8ee41be629cd905d34cfc985e39f4564 334 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 5 334 4.9E-123 T 11-11-2016 IPR011854 Hydrogenase expression/formation protein HypE Gferi_RS07445 8ee41be629cd905d34cfc985e39f4564 334 SUPERFAMILY SSF55326 4 151 8.9E-32 T 11-11-2016 Gferi_RS07445 8ee41be629cd905d34cfc985e39f4564 334 Gene3D G3DSA:3.90.650.10 158 303 1.1E-18 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS07445 8ee41be629cd905d34cfc985e39f4564 334 PIRSF PIRSF005644 1 334 1.8E-112 T 11-11-2016 IPR011854 Hydrogenase expression/formation protein HypE Gferi_RS07445 8ee41be629cd905d34cfc985e39f4564 334 SUPERFAMILY SSF56042 157 328 3.59E-32 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS07445 8ee41be629cd905d34cfc985e39f4564 334 Pfam PF02769 AIR synthase related protein, C-terminal domain 159 301 6.2E-20 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS16035 ff6ca47f8cd0a5140f6cce05fca78997 262 Gene3D G3DSA:3.40.50.620 1 259 6.2E-83 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS16035 ff6ca47f8cd0a5140f6cce05fca78997 262 Pfam PF01012 Electron transfer flavoprotein domain 22 191 1.3E-43 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS16035 ff6ca47f8cd0a5140f6cce05fca78997 262 PIRSF PIRSF000090 1 262 1.4E-82 T 11-11-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105 Gferi_RS16035 ff6ca47f8cd0a5140f6cce05fca78997 262 SMART SM00893 22 213 1.8E-50 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS16035 ff6ca47f8cd0a5140f6cce05fca78997 262 SUPERFAMILY SSF52402 1 257 5.44E-73 T 11-11-2016 Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 SUPERFAMILY SSF52540 162 406 1.81E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 Gene3D G3DSA:3.30.450.20 29 127 2.6E-8 T 11-11-2016 Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 SMART SM00091 29 95 5.7E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 SMART SM00382 183 326 3.4E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 376 385 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 249 264 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 SUPERFAMILY SSF46689 435 477 5.38E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 Gene3D G3DSA:1.10.8.60 336 410 2.9E-26 T 11-11-2016 Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 Gene3D G3DSA:3.40.50.300 160 335 3.3E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 Pfam PF00989 PAS fold 30 116 4.7E-7 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 SUPERFAMILY SSF55785 27 94 3.84E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 Pfam PF00158 Sigma-54 interaction domain 163 329 3.3E-72 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 Gene3D G3DSA:1.10.10.60 436 477 1.5E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13025 334c53c7225a74a543dbf5ea210ee4e2 479 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 187 200 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Pfam PF00158 Sigma-54 interaction domain 253 420 4.4E-70 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 SUPERFAMILY SSF55785 2 99 2.97E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Pfam PF02954 Bacterial regulatory protein, Fis family 529 569 4.5E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 467 476 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Gene3D G3DSA:3.30.450.20 122 242 2.9E-12 T 11-11-2016 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Gene3D G3DSA:3.30.450.20 4 117 3.3E-16 T 11-11-2016 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Pfam PF00989 PAS fold 4 103 1.6E-12 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Pfam PF00989 PAS fold 122 224 9.8E-9 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Gene3D G3DSA:3.40.50.300 249 426 3.0E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 SMART SM00382 273 417 2.1E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 535 552 2.2E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 552 572 2.2E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 SUPERFAMILY SSF46689 467 571 2.6E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Gene3D G3DSA:1.10.10.60 524 572 3.0E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 340 355 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 Gene3D G3DSA:1.10.8.60 427 499 3.8E-19 T 11-11-2016 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 277 290 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 SUPERFAMILY SSF55785 102 221 5.58E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 SMART SM00091 121 189 0.018 T 11-11-2016 IPR000014 PAS domain Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 SMART SM00091 3 69 8.7E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 5 112 1.5E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 117 234 4.4E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS18805 313bddcc855b2c94f69fb3813693d51d 572 SUPERFAMILY SSF52540 252 490 1.74E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21780 c2a4a878cb79164e97eac22701a70814 141 Pfam PF12663 Protein of unknown function (DUF3788) 11 137 5.8E-39 T 11-11-2016 IPR024265 Protein of unknown function DUF3788 Gferi_RS08430 038a3a742d7c8ad0c3064856d347f23a 515 Gene3D G3DSA:3.40.810.20 247 487 5.0E-71 T 11-11-2016 Gferi_RS08430 038a3a742d7c8ad0c3064856d347f23a 515 Gene3D G3DSA:3.40.1080.10 1 245 5.0E-98 T 11-11-2016 Gferi_RS08430 038a3a742d7c8ad0c3064856d347f23a 515 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 45 513 1.2E-224 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Gferi_RS08430 038a3a742d7c8ad0c3064856d347f23a 515 SUPERFAMILY SSF100950 247 513 1.08E-55 T 11-11-2016 Gferi_RS08430 038a3a742d7c8ad0c3064856d347f23a 515 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 41 513 5.1E-229 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Gferi_RS08430 038a3a742d7c8ad0c3064856d347f23a 515 PIRSF PIRSF009451 1 515 6.4E-240 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Gferi_RS08430 038a3a742d7c8ad0c3064856d347f23a 515 SUPERFAMILY SSF100950 3 244 1.4E-67 T 11-11-2016 Gferi_RS17335 d8d5f5feb11176e4c3c4682f77cbc623 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 27.516 T 11-11-2016 IPR022973 Ribosomal protein L10 Gferi_RS17335 d8d5f5feb11176e4c3c4682f77cbc623 166 Pfam PF00466 Ribosomal protein L10 6 101 2.4E-30 T 11-11-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 Gferi_RS17335 d8d5f5feb11176e4c3c4682f77cbc623 166 SUPERFAMILY SSF160369 5 160 8.63E-56 T 11-11-2016 Gferi_RS15455 ec46960d8f37424d05895ba60a36b835 139 SUPERFAMILY SSF52016 5 137 2.51E-23 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS15455 ec46960d8f37424d05895ba60a36b835 139 Gene3D G3DSA:3.50.30.10 4 138 7.4E-29 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS15455 ec46960d8f37424d05895ba60a36b835 139 Pfam PF01989 Protein of unknown function DUF126 32 107 1.8E-16 T 11-11-2016 IPR002840 Domain of unknown function DUF126 Gferi_RS05855 3df72b0fd5c970a83f6ab42af9e7f665 363 SUPERFAMILY SSF46785 2 52 3.01E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05855 3df72b0fd5c970a83f6ab42af9e7f665 363 SUPERFAMILY SSF53613 60 359 3.43E-63 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS05855 3df72b0fd5c970a83f6ab42af9e7f665 363 Pfam PF00294 pfkB family carbohydrate kinase 58 347 8.6E-56 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS05855 3df72b0fd5c970a83f6ab42af9e7f665 363 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 93 117 - T 11-11-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Gferi_RS05855 3df72b0fd5c970a83f6ab42af9e7f665 363 Gene3D G3DSA:3.40.1190.20 60 360 5.0E-68 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS05855 3df72b0fd5c970a83f6ab42af9e7f665 363 SMART SM00419 10 64 2.1E-4 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS05855 3df72b0fd5c970a83f6ab42af9e7f665 363 Gene3D G3DSA:1.10.10.10 1 56 1.1E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05855 3df72b0fd5c970a83f6ab42af9e7f665 363 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 47 3.6E-13 T 11-11-2016 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 Gene3D G3DSA:3.30.499.10 358 541 2.2E-30 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 Gene3D G3DSA:3.30.499.10 310 323 2.2E-30 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 Gene3D G3DSA:3.40.1060.10 196 301 1.9E-19 T 11-11-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 Gene3D G3DSA:3.20.19.10 542 763 3.6E-41 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 SUPERFAMILY SSF53732 47 497 9.29E-109 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 PRINTS PR00415 Aconitase family signature 149 162 2.4E-5 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 PRINTS PR00415 Aconitase family signature 306 320 2.4E-5 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 PRINTS PR00415 Aconitase family signature 423 436 2.4E-5 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 PRINTS PR00415 Aconitase family signature 225 238 2.4E-5 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 SUPERFAMILY SSF52016 518 763 1.84E-35 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 Pfam PF00330 Aconitase family (aconitate hydratase) 50 480 1.5E-75 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 Pfam PF00694 Aconitase C-terminal domain 652 699 1.7E-5 T 11-11-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS08425 bee59d1905e2cac870dc11ed8b6789a8 766 Gene3D G3DSA:3.30.499.10 21 194 9.5E-32 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS07680 40c55cd8a2c5bc4950731ddb844c5eeb 345 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS07680 40c55cd8a2c5bc4950731ddb844c5eeb 345 SUPERFAMILY SSF52540 4 243 5.18E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07680 40c55cd8a2c5bc4950731ddb844c5eeb 345 Pfam PF00005 ABC transporter 19 161 1.6E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS07680 40c55cd8a2c5bc4950731ddb844c5eeb 345 SUPERFAMILY SSF50331 257 339 4.76E-8 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal Gferi_RS07680 40c55cd8a2c5bc4950731ddb844c5eeb 345 SMART SM00382 28 211 3.0E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07680 40c55cd8a2c5bc4950731ddb844c5eeb 345 Gene3D G3DSA:3.40.50.300 3 234 1.5E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07680 40c55cd8a2c5bc4950731ddb844c5eeb 345 Pfam PF08402 TOBE domain 260 337 7.4E-6 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 SUPERFAMILY SSF52540 320 551 1.29E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 SUPERFAMILY SSF46689 531 630 7.47E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Pfam PF13426 PAS domain 204 294 4.4E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 SMART SM00382 340 485 1.3E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Gene3D G3DSA:3.40.50.10660 75 164 9.2E-13 T 11-11-2016 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Gene3D G3DSA:1.10.8.60 494 553 1.0E-17 T 11-11-2016 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Gene3D G3DSA:3.30.450.20 190 304 8.1E-13 T 11-11-2016 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Pfam PF02954 Bacterial regulatory protein, Fis family 587 628 6.9E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 SUPERFAMILY SSF55785 193 272 2.62E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Gene3D G3DSA:1.10.10.60 583 630 7.0E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 SUPERFAMILY SSF159800 1 183 5.89E-42 T 11-11-2016 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Pfam PF00158 Sigma-54 interaction domain 321 487 3.6E-68 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 SMART SM00091 193 259 1.1E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Gene3D G3DSA:3.40.50.2300 166 189 9.2E-17 T 11-11-2016 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Gene3D G3DSA:3.40.50.2300 1 74 9.2E-17 T 11-11-2016 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 407 422 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Gene3D G3DSA:3.40.50.300 318 493 1.3E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 344 357 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS25290 9939105a9e822e80d72e334d5c117710 633 Pfam PF06506 Propionate catabolism activator 22 187 9.7E-40 T 11-11-2016 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 Gferi_RS10300 d8be00e0ec4f0cca412360d25849ee9c 261 SUPERFAMILY SSF143422 1 129 1.83E-26 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10300 d8be00e0ec4f0cca412360d25849ee9c 261 Pfam PF01797 Transposase IS200 like 12 123 2.4E-18 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10300 d8be00e0ec4f0cca412360d25849ee9c 261 SMART SM01321 9 123 1.5E-39 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10300 d8be00e0ec4f0cca412360d25849ee9c 261 Gene3D G3DSA:3.30.70.1290 6 126 1.8E-15 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 SMART SM00388 245 311 4.2E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 Gene3D G3DSA:3.30.565.10 297 468 1.1E-51 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 SMART SM00387 357 469 1.2E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 468 3.7E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 SUPERFAMILY SSF47384 229 312 3.73E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 408 1.7E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 422 1.7E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 1.7E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 466 1.7E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 Gene3D G3DSA:1.10.287.130 235 296 8.6E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 Gene3D G3DSA:3.30.450.20 30 164 6.0E-5 T 11-11-2016 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 Pfam PF00672 HAMP domain 173 240 2.1E-17 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 310 2.0E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 SUPERFAMILY SSF158472 193 241 1.7E-10 T 11-11-2016 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 SMART SM00304 192 244 2.2E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS11885 5fc30c3f1d7af2e0096baf6a905809ef 472 SUPERFAMILY SSF55874 301 467 1.44E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 Gene3D G3DSA:3.40.630.10 1 177 1.5E-72 T 11-11-2016 Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 Gene3D G3DSA:3.40.630.10 287 368 1.5E-72 T 11-11-2016 Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 Pfam PF01546 Peptidase family M20/M25/M40 72 367 2.7E-21 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 SUPERFAMILY SSF55031 178 289 1.57E-22 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 Gene3D G3DSA:3.30.70.360 179 283 1.5E-26 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 SUPERFAMILY SSF53187 5 176 1.39E-63 T 11-11-2016 Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 SUPERFAMILY SSF53187 287 367 1.39E-63 T 11-11-2016 Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 6 367 1.4E-122 T 11-11-2016 IPR010162 Peptidase M20B, peptidase T-like Gferi_RS12015 88bc1479793726a9d8d8694ed38a8bca 370 Pfam PF07687 Peptidase dimerisation domain 182 273 1.2E-16 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 Gene3D G3DSA:1.10.10.10 2 86 4.7E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.4E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.4E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.4E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.0E-19 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 Gene3D G3DSA:3.40.190.10 88 170 2.5E-14 T 11-11-2016 Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 Gene3D G3DSA:3.40.190.10 171 259 1.1E-21 T 11-11-2016 Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 SUPERFAMILY SSF53850 88 290 8.04E-43 T 11-11-2016 Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 Pfam PF03466 LysR substrate binding domain 88 287 5.0E-46 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS23895 7c2cdf235538b6c749d230ea522eb68e 292 SUPERFAMILY SSF46785 2 108 1.49E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12795 c0c202846f3f57bc112fcc9e91123fa4 357 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 178 198 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Gferi_RS12795 c0c202846f3f57bc112fcc9e91123fa4 357 Pfam PF00266 Aminotransferase class-V 4 344 3.9E-52 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS12795 c0c202846f3f57bc112fcc9e91123fa4 357 Gene3D G3DSA:3.90.1150.10 254 355 1.1E-31 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS12795 c0c202846f3f57bc112fcc9e91123fa4 357 SUPERFAMILY SSF53383 3 354 1.83E-103 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS12795 c0c202846f3f57bc112fcc9e91123fa4 357 PIRSF PIRSF000524 1 357 1.4E-130 T 11-11-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 Gferi_RS12795 c0c202846f3f57bc112fcc9e91123fa4 357 Gene3D G3DSA:3.40.640.10 14 253 2.5E-56 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 SUPERFAMILY SSF53850 91 274 1.18E-18 T 11-11-2016 Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 SUPERFAMILY SSF46785 6 108 3.66E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 Gene3D G3DSA:1.10.10.10 6 81 5.9E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 Pfam PF03466 LysR substrate binding domain 86 272 3.4E-13 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 6.9E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 Gene3D G3DSA:3.40.190.10 91 166 3.0E-13 T 11-11-2016 Gferi_RS14135 bc0574c9c5b391b45b293575dfbbad1b 307 Gene3D G3DSA:3.40.190.10 198 205 3.0E-13 T 11-11-2016 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 SUPERFAMILY SSF46689 222 270 1.88E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 Pfam PF12833 Helix-turn-helix domain 191 268 5.7E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 SUPERFAMILY SSF51215 20 153 1.26E-7 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 Pfam PF02311 AraC-like ligand binding domain 16 147 1.6E-6 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 Gene3D G3DSA:1.10.10.60 166 222 8.4E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 222 264 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 Gene3D G3DSA:2.60.120.280 21 154 8.2E-7 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 SMART SM00342 185 268 5.2E-27 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 SUPERFAMILY SSF46689 169 218 2.46E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 252 2.0E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 268 2.0E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS21545 3b53e434ad00ce3aa8fca11c2c3b5705 277 Gene3D G3DSA:1.10.10.60 223 269 3.8E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS02310 c5ce261ea5b51efed7499f395b59e77a 147 Pfam PF09424 Yqey-like protein 4 146 3.0E-53 T 11-11-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial Gferi_RS02310 c5ce261ea5b51efed7499f395b59e77a 147 Gene3D G3DSA:1.10.10.410 91 147 3.5E-26 T 11-11-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Gferi_RS02310 c5ce261ea5b51efed7499f395b59e77a 147 Gene3D G3DSA:1.10.1510.10 1 90 3.9E-29 T 11-11-2016 Gferi_RS02310 c5ce261ea5b51efed7499f395b59e77a 147 SUPERFAMILY SSF89095 1 147 1.83E-43 T 11-11-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 Gferi_RS02380 0fc7ab1e1db803fe3a300d4217d577a6 424 TIGRFAM TIGR02867 spore_II_P: stage II sporulation protein P 219 419 1.2E-55 T 11-11-2016 IPR010897 Sporulation stage II, protein P Gferi_RS02380 0fc7ab1e1db803fe3a300d4217d577a6 424 Pfam PF07454 Stage II sporulation protein P (SpoIIP) 107 415 1.1E-70 T 11-11-2016 IPR010897 Sporulation stage II, protein P Gferi_RS03670 9941e93512f096800d856735915286f6 3285 Gene3D G3DSA:3.40.50.300 2838 2970 4.1E-20 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03670 9941e93512f096800d856735915286f6 3285 Pfam PF00271 Helicase conserved C-terminal domain 2862 2935 1.8E-4 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS03670 9941e93512f096800d856735915286f6 3285 SMART SM00487 2409 2680 1.3E-10 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS03670 9941e93512f096800d856735915286f6 3285 Gene3D G3DSA:3.40.50.300 2583 2667 5.5E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03670 9941e93512f096800d856735915286f6 3285 Gene3D G3DSA:3.40.50.300 2412 2521 5.5E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03670 9941e93512f096800d856735915286f6 3285 Pfam PF00176 SNF2 family N-terminal domain 2429 2703 6.1E-11 T 11-11-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 Gferi_RS03670 9941e93512f096800d856735915286f6 3285 Gene3D G3DSA:3.40.50.150 1723 1941 1.5E-43 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS03670 9941e93512f096800d856735915286f6 3285 SUPERFAMILY SSF53335 1711 1918 6.38E-35 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS03670 9941e93512f096800d856735915286f6 3285 SUPERFAMILY SSF52540 2738 3019 7.66E-26 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03670 9941e93512f096800d856735915286f6 3285 SUPERFAMILY SSF52540 2367 2523 2.36E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03670 9941e93512f096800d856735915286f6 3285 SUPERFAMILY SSF52540 2584 2685 2.36E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20800 052aa4e0fe5cbecf6309f64a3c3c577e 294 Gene3D G3DSA:3.40.190.10 210 293 5.5E-21 T 11-11-2016 Gferi_RS20800 052aa4e0fe5cbecf6309f64a3c3c577e 294 Pfam PF12849 PBP superfamily domain 46 269 1.9E-27 T 11-11-2016 IPR024370 PBP domain Gferi_RS20800 052aa4e0fe5cbecf6309f64a3c3c577e 294 SUPERFAMILY SSF53850 48 280 1.52E-29 T 11-11-2016 Gferi_RS20800 052aa4e0fe5cbecf6309f64a3c3c577e 294 Gene3D G3DSA:3.40.190.10 40 175 1.4E-37 T 11-11-2016 Gferi_RS15215 0b84c2ed5ef9a2121d6be5779ace6c11 606 Pfam PF00664 ABC transporter transmembrane region 49 319 3.2E-65 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS15215 0b84c2ed5ef9a2121d6be5779ace6c11 606 SMART SM00382 390 576 1.7E-18 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15215 0b84c2ed5ef9a2121d6be5779ace6c11 606 SUPERFAMILY SSF52540 354 601 1.01E-92 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15215 0b84c2ed5ef9a2121d6be5779ace6c11 606 Gene3D G3DSA:3.40.50.300 365 594 1.5E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15215 0b84c2ed5ef9a2121d6be5779ace6c11 606 Gene3D G3DSA:1.20.1560.10 36 348 2.5E-96 T 11-11-2016 Gferi_RS15215 0b84c2ed5ef9a2121d6be5779ace6c11 606 ProSitePatterns PS00211 ABC transporters family signature. 502 516 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15215 0b84c2ed5ef9a2121d6be5779ace6c11 606 SUPERFAMILY SSF90123 36 351 1.57E-93 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS15215 0b84c2ed5ef9a2121d6be5779ace6c11 606 Pfam PF00005 ABC transporter 381 530 5.7E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 SUPERFAMILY SSF46689 374 469 4.18E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 450 2.5E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 450 470 2.5E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 247 262 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 Pfam PF02954 Bacterial regulatory protein, Fis family 431 467 1.1E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 Gene3D G3DSA:1.10.8.60 334 407 3.2E-22 T 11-11-2016 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 SMART SM00091 24 88 0.002 T 11-11-2016 IPR000014 PAS domain Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 Pfam PF00989 PAS fold 24 85 2.3E-6 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 SMART SM00382 180 324 4.2E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 Gene3D G3DSA:3.40.50.300 156 333 1.0E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 Gene3D G3DSA:1.10.10.60 414 469 2.0E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 SUPERFAMILY SSF52540 159 405 2.35E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 Pfam PF00158 Sigma-54 interaction domain 160 327 6.6E-68 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 80 8.2E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 184 197 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 SUPERFAMILY SSF55785 13 117 1.52E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 374 383 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS11160 dad5f279668f76005d267dbd64d9a07c 477 Gene3D G3DSA:3.30.450.20 17 105 1.1E-11 T 11-11-2016 Gferi_RS25285 3d1c9e8db2f8a9608dd83c1d7d327215 449 Gene3D G3DSA:3.40.50.300 217 370 2.7E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25285 3d1c9e8db2f8a9608dd83c1d7d327215 449 SMART SM00490 255 336 4.0E-30 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS25285 3d1c9e8db2f8a9608dd83c1d7d327215 449 Pfam PF00271 Helicase conserved C-terminal domain 230 336 1.7E-28 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS25285 3d1c9e8db2f8a9608dd83c1d7d327215 449 SUPERFAMILY SSF52540 71 357 1.64E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25285 3d1c9e8db2f8a9608dd83c1d7d327215 449 Pfam PF00270 DEAD/DEAH box helicase 27 190 1.7E-49 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Gferi_RS25285 3d1c9e8db2f8a9608dd83c1d7d327215 449 Gene3D G3DSA:3.40.50.300 3 216 6.3E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25285 3d1c9e8db2f8a9608dd83c1d7d327215 449 SMART SM00487 22 219 2.3E-61 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS16550 8db327079d3694ec4e3828621c79ae3a 427 Pfam PF09861 Domain of unknown function (DUF2088) 8 206 3.0E-68 T 11-11-2016 IPR018657 Domain of unknown function DUF2088 Gferi_RS24675 e2d865bfd4452dd8171e3013e30c4eec 157 SUPERFAMILY SSF55729 1 135 9.29E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS24675 e2d865bfd4452dd8171e3013e30c4eec 157 Gene3D G3DSA:3.40.630.30 1 148 5.4E-21 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS24675 e2d865bfd4452dd8171e3013e30c4eec 157 Pfam PF13673 Acetyltransferase (GNAT) domain 51 138 7.4E-14 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS10090 7b9423329eaebf31127dfa2d4a46a7aa 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 428 102.056 T 11-11-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Gferi_RS10090 7b9423329eaebf31127dfa2d4a46a7aa 429 Pfam PF00202 Aminotransferase class-III 36 419 2.7E-78 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS10090 7b9423329eaebf31127dfa2d4a46a7aa 429 Gene3D G3DSA:3.40.640.10 72 318 7.7E-81 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS10090 7b9423329eaebf31127dfa2d4a46a7aa 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 5 425 5.6E-194 T 11-11-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Gferi_RS10090 7b9423329eaebf31127dfa2d4a46a7aa 429 SUPERFAMILY SSF53383 1 427 2.02E-132 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS10090 7b9423329eaebf31127dfa2d4a46a7aa 429 Gene3D G3DSA:3.90.1150.10 3 71 7.7E-46 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS10090 7b9423329eaebf31127dfa2d4a46a7aa 429 Gene3D G3DSA:3.90.1150.10 322 426 7.7E-46 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS10090 7b9423329eaebf31127dfa2d4a46a7aa 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS03655 07a7b2dbc2f259e3947704089000d154 110 Pfam PF01934 Protein of unknown function DUF86 13 108 3.3E-10 T 11-11-2016 IPR008201 Protein of unknown function DUF86 Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 ProSitePatterns PS01117 MarR-type HTH domain signature. 68 102 - T 11-11-2016 IPR023187 Transcriptional regulator MarR-type, conserved site Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 Pfam PF01047 MarR family 34 94 4.4E-15 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 SUPERFAMILY SSF46785 11 142 9.11E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 SMART SM00347 27 129 9.1E-29 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 Gene3D G3DSA:1.10.10.10 7 143 1.2E-37 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 53 69 6.1E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 6.1E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 6.1E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS11410 e3fe13393c0fb613a5baa61c9708093e 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 6.1E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS25725 68acb91ccab25e9fe5cd49e251b4b610 221 Pfam PF02308 MgtC family 11 138 6.3E-38 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS25725 68acb91ccab25e9fe5cd49e251b4b610 221 Gene3D G3DSA:3.30.70.260 147 218 1.1E-6 T 11-11-2016 Gferi_RS25725 68acb91ccab25e9fe5cd49e251b4b610 221 Pfam PF01842 ACT domain 148 211 8.2E-8 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 Gferi_RS25725 68acb91ccab25e9fe5cd49e251b4b610 221 PRINTS PR01837 MgtC/SapB protein signature 92 116 4.4E-43 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS25725 68acb91ccab25e9fe5cd49e251b4b610 221 PRINTS PR01837 MgtC/SapB protein signature 65 87 4.4E-43 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS25725 68acb91ccab25e9fe5cd49e251b4b610 221 PRINTS PR01837 MgtC/SapB protein signature 33 51 4.4E-43 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS25725 68acb91ccab25e9fe5cd49e251b4b610 221 PRINTS PR01837 MgtC/SapB protein signature 14 33 4.4E-43 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS25725 68acb91ccab25e9fe5cd49e251b4b610 221 SUPERFAMILY SSF55021 146 220 1.81E-9 T 11-11-2016 Gferi_RS25840 8476558ce8d7028759dbee6023dbd2ce 195 Gene3D G3DSA:3.30.230.40 91 195 5.4E-30 T 11-11-2016 Gferi_RS25840 8476558ce8d7028759dbee6023dbd2ce 195 SUPERFAMILY SSF54211 89 179 7.33E-33 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS25840 8476558ce8d7028759dbee6023dbd2ce 195 Gene3D G3DSA:3.30.230.40 3 89 4.5E-35 T 11-11-2016 Gferi_RS25840 8476558ce8d7028759dbee6023dbd2ce 195 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 3 195 39.73 T 11-11-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Gferi_RS25840 8476558ce8d7028759dbee6023dbd2ce 195 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 32 175 1.7E-60 T 11-11-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Gferi_RS25840 8476558ce8d7028759dbee6023dbd2ce 195 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 157 169 - T 11-11-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Gferi_RS25840 8476558ce8d7028759dbee6023dbd2ce 195 SUPERFAMILY SSF54211 3 86 2.15E-31 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS25840 8476558ce8d7028759dbee6023dbd2ce 195 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 62 75 - T 11-11-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 SMART SM00871 128 277 3.5E-19 T 11-11-2016 IPR010499 Bacterial transcription activator, effector binding Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 SUPERFAMILY SSF55136 129 278 1.31E-21 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 Gene3D G3DSA:1.10.10.60 1 57 3.4E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 SUPERFAMILY SSF46689 5 55 4.21E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 Gene3D G3DSA:1.10.10.60 58 113 1.2E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 Pfam PF12833 Helix-turn-helix domain 28 105 2.8E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 SMART SM00342 21 104 6.6E-22 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 Gene3D G3DSA:3.20.80.10 114 276 1.3E-24 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 Pfam PF14526 Integron-associated effector binding protein 131 276 2.4E-19 T 11-11-2016 IPR029441 Integron-associated effector binding protein Gferi_RS21710 ce5d2cb6eb831ecbfedbe2dac17d9167 279 SUPERFAMILY SSF46689 57 107 2.11E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 430 480 7.4E-8 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 SUPERFAMILY SSF63520 312 423 2.22E-23 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Gene3D G3DSA:1.10.10.10 93 157 9.3E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Gene3D G3DSA:1.10.10.10 10 68 1.0E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Gene3D G3DSA:3.40.50.270 429 499 6.3E-8 T 11-11-2016 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 577 593 - T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Gene3D G3DSA:3.40.930.10 529 669 9.4E-32 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Gene3D G3DSA:1.10.1790.10 321 421 3.9E-23 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Gene3D G3DSA:1.10.1790.10 213 302 1.3E-19 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 SUPERFAMILY SSF46785 6 61 1.85E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 SUPERFAMILY SSF52794 426 501 8.37E-10 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 SUPERFAMILY SSF63520 211 303 3.66E-19 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 533 668 1.1E-26 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 SUPERFAMILY SSF55804 530 670 2.09E-28 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Pfam PF00874 PRD domain 329 417 3.0E-20 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Pfam PF00874 PRD domain 214 302 6.3E-19 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Pfam PF08279 HTH domain 11 58 1.8E-6 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS04500 69f976efd1e6246f34f914706e6fd202 676 Pfam PF05043 Mga helix-turn-helix domain 88 171 4.4E-8 T 11-11-2016 IPR007737 Mga helix-turn-helix domain Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 Gene3D G3DSA:3.40.630.10 3 179 2.4E-94 T 11-11-2016 Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 Gene3D G3DSA:3.40.630.10 299 381 2.4E-94 T 11-11-2016 Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 Pfam PF07687 Peptidase dimerisation domain 186 277 1.6E-9 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 Gene3D G3DSA:3.30.70.360 182 298 3.9E-37 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 PIRSF PIRSF005962 1 384 3.0E-129 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 SUPERFAMILY SSF55031 186 297 3.14E-27 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 SUPERFAMILY SSF53187 5 198 1.91E-79 T 11-11-2016 Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 SUPERFAMILY SSF53187 299 381 1.91E-79 T 11-11-2016 Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 371 4.2E-111 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS04220 4b47142faadcecbba2d8e24ecacda861 397 Pfam PF01546 Peptidase family M20/M25/M40 72 381 2.1E-33 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS23420 7deeaf04a4b73b40f240a615362f49eb 455 SUPERFAMILY SSF53187 33 90 5.78E-61 T 11-11-2016 Gferi_RS23420 7deeaf04a4b73b40f240a615362f49eb 455 SUPERFAMILY SSF53187 220 432 5.78E-61 T 11-11-2016 Gferi_RS23420 7deeaf04a4b73b40f240a615362f49eb 455 Gene3D G3DSA:3.40.630.10 230 433 5.7E-66 T 11-11-2016 Gferi_RS23420 7deeaf04a4b73b40f240a615362f49eb 455 Gene3D G3DSA:3.40.630.10 27 97 5.7E-66 T 11-11-2016 Gferi_RS23420 7deeaf04a4b73b40f240a615362f49eb 455 Gene3D G3DSA:3.50.30.30 108 225 1.5E-35 T 11-11-2016 Gferi_RS23420 7deeaf04a4b73b40f240a615362f49eb 455 SUPERFAMILY SSF52025 112 219 1.15E-25 T 11-11-2016 Gferi_RS23420 7deeaf04a4b73b40f240a615362f49eb 455 Pfam PF02225 PA domain 129 211 1.6E-18 T 11-11-2016 IPR003137 PA domain Gferi_RS23420 7deeaf04a4b73b40f240a615362f49eb 455 Pfam PF04389 Peptidase family M28 238 423 1.1E-43 T 11-11-2016 IPR007484 Peptidase M28 Gferi_RS16715 0f99a1b7b6596bbf27e36472e10e1790 271 Pfam PF09182 Bacterial purine repressor, N-terminal 4 73 1.4E-29 T 11-11-2016 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 Gferi_RS16715 0f99a1b7b6596bbf27e36472e10e1790 271 Gene3D G3DSA:1.10.10.10 1 73 5.2E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16715 0f99a1b7b6596bbf27e36472e10e1790 271 ProDom PD029816 REPRESSOR OPERON PUR TRANSCRIPTION PURINE TRANSCRIPTIONAL PURR REGULATION DNA-BINDING GLYCOSYLTRANSFERASE 12 73 2.0E-21 T 11-11-2016 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 Gferi_RS16715 0f99a1b7b6596bbf27e36472e10e1790 271 SUPERFAMILY SSF53271 84 258 1.19E-38 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS16715 0f99a1b7b6596bbf27e36472e10e1790 271 SUPERFAMILY SSF46785 2 74 2.64E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16715 0f99a1b7b6596bbf27e36472e10e1790 271 TIGRFAM TIGR01743 purR_Bsub: pur operon repressor PurR 3 263 7.6E-114 T 11-11-2016 IPR010078 Pur operon repressor GO:0003677|GO:0045892|GO:0045982 Gferi_RS16715 0f99a1b7b6596bbf27e36472e10e1790 271 Pfam PF00156 Phosphoribosyl transferase domain 116 239 1.5E-16 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS16715 0f99a1b7b6596bbf27e36472e10e1790 271 Gene3D G3DSA:3.40.50.2020 84 260 6.4E-53 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS26120 7c7a2b9743245775c5727f2dd49b9c0a 199 Gene3D G3DSA:1.10.1740.10 5 106 2.6E-33 T 11-11-2016 Gferi_RS26120 7c7a2b9743245775c5727f2dd49b9c0a 199 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 184 1.0E-40 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26120 7c7a2b9743245775c5727f2dd49b9c0a 199 SUPERFAMILY SSF88946 5 101 1.04E-29 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26120 7c7a2b9743245775c5727f2dd49b9c0a 199 Pfam PF04542 Sigma-70 region 2 23 89 1.7E-20 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26120 7c7a2b9743245775c5727f2dd49b9c0a 199 Gene3D G3DSA:1.10.10.10 122 187 8.9E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26120 7c7a2b9743245775c5727f2dd49b9c0a 199 SUPERFAMILY SSF88659 106 187 5.98E-19 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26120 7c7a2b9743245775c5727f2dd49b9c0a 199 Pfam PF08281 Sigma-70, region 4 129 181 8.2E-18 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10140 6880d2ab667442a204c23c2f4d7c9aef 391 SUPERFAMILY SSF142019 42 243 1.96E-46 T 11-11-2016 Gferi_RS10140 6880d2ab667442a204c23c2f4d7c9aef 391 Pfam PF13375 RnfC Barrel sandwich hybrid domain 2 57 4.0E-15 T 11-11-2016 IPR026902 RnfC Barrel sandwich hybrid domain Gferi_RS10140 6880d2ab667442a204c23c2f4d7c9aef 391 TIGRFAM TIGR04481 PR_assoc_PrdC: proline reductase-associated electron transfer protein PrdC 4 391 8.6E-167 T 11-11-2016 IPR031001 Proline reductase-associated electron transfer protein PrdC Gferi_RS10140 6880d2ab667442a204c23c2f4d7c9aef 391 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 82 225 6.4E-42 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20055 cdef150a718418af69dc9231802f10ba 311 Gene3D G3DSA:1.10.3720.10 91 304 4.5E-17 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20055 cdef150a718418af69dc9231802f10ba 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 308 4.9E-44 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20055 cdef150a718418af69dc9231802f10ba 311 SUPERFAMILY SSF161098 93 307 9.16E-17 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 SMART SM00829 10 323 8.2E-59 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 Pfam PF00107 Zinc-binding dehydrogenase 151 280 2.7E-31 T 11-11-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 1 324 1.5E-89 T 11-11-2016 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 11-11-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 Gene3D G3DSA:3.40.50.720 148 262 7.6E-31 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 SUPERFAMILY SSF51735 112 291 3.07E-46 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 Gene3D G3DSA:3.90.180.10 1 147 2.6E-52 T 11-11-2016 IPR011032 GroES-like Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 SUPERFAMILY SSF50129 1 149 3.04E-39 T 11-11-2016 IPR011032 GroES-like Gferi_RS08760 a85d2264d59d33db1a872eecdab09c3f 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 89 3.0E-10 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 Pfam PF13840 ACT domain 335 394 6.7E-7 T 11-11-2016 IPR027795 GATS-like ACT domain Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 Pfam PF00696 Amino acid kinase family 3 228 9.9E-48 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 SUPERFAMILY SSF53633 3 240 5.11E-69 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 SUPERFAMILY SSF55021 248 327 6.01E-10 T 11-11-2016 Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 400 2.2E-100 T 11-11-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 SUPERFAMILY SSF55021 332 400 6.01E-16 T 11-11-2016 Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 11-11-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 PIRSF PIRSF000726 57 401 7.4E-102 T 11-11-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS16665 d10f0eb496dc9196dcc9667ae6d19987 401 Gene3D G3DSA:3.40.1160.10 1 241 1.3E-65 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS10945 3d776331701ef0d2e65fc118d998c649 263 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 10 30 - T 11-11-2016 IPR019776 Flagellar basal body rod protein, conserved site Gferi_RS10945 3d776331701ef0d2e65fc118d998c649 263 Pfam PF00460 Flagella basal body rod protein 4 34 2.5E-14 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Gferi_RS10945 3d776331701ef0d2e65fc118d998c649 263 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 185 261 4.1E-27 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Gferi_RS10945 3d776331701ef0d2e65fc118d998c649 263 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 136 6.8E-45 T 11-11-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G Gferi_RS10945 3d776331701ef0d2e65fc118d998c649 263 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 151 244 5.4E-28 T 11-11-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G Gferi_RS10945 3d776331701ef0d2e65fc118d998c649 263 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 3 261 5.4E-89 T 11-11-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 Gferi_RS10945 3d776331701ef0d2e65fc118d998c649 263 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 242 4.8E-54 T 11-11-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 Gferi_RS10945 3d776331701ef0d2e65fc118d998c649 263 SUPERFAMILY SSF117143 89 223 1.83E-31 T 11-11-2016 Gferi_RS21355 781abc0404de062fd668bd636218e9fb 144 Pfam PF13787 Protein of unknown function with HXXEE motif 17 90 4.1E-9 T 11-11-2016 IPR025671 Protein of unknown function with HXXEE motif Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 Hamap MF_00542 Probable butyrate kinase [buk]. 1 358 179.071 T 11-11-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 PRINTS PR00471 Acetate kinase family signature 299 315 8.2E-20 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 PRINTS PR00471 Acetate kinase family signature 7 18 8.2E-20 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 PRINTS PR00471 Acetate kinase family signature 276 289 8.2E-20 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 PRINTS PR00471 Acetate kinase family signature 151 164 8.2E-20 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 PRINTS PR00471 Acetate kinase family signature 181 202 8.2E-20 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 SUPERFAMILY SSF53067 118 350 1.06E-60 T 11-11-2016 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 Pfam PF00871 Acetokinase family 7 355 3.5E-82 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 PIRSF PIRSF036458 3 358 3.4E-178 T 11-11-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 SUPERFAMILY SSF53067 5 174 1.81E-74 T 11-11-2016 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 7 18 - T 11-11-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 Gene3D G3DSA:3.30.420.40 182 340 2.0E-50 T 11-11-2016 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 6 355 1.3E-180 T 11-11-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 Gene3D G3DSA:3.30.420.40 5 181 2.0E-88 T 11-11-2016 Gferi_RS18820 e9df7eca0858fc456eadd07ad01c9258 358 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 181 198 - T 11-11-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS21920 f3d50c92baf588052183b36f455f1456 120 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 116 1.9E-13 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Gferi_RS21920 f3d50c92baf588052183b36f455f1456 120 SUPERFAMILY SSF54593 1 119 5.64E-24 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS21920 f3d50c92baf588052183b36f455f1456 120 Gene3D G3DSA:3.10.180.10 1 119 7.9E-22 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS02610 684743ebef36ef47c1e3d96bc68d5469 401 Pfam PF03616 Sodium/glutamate symporter 4 369 8.9E-125 T 11-11-2016 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 Gferi_RS02610 684743ebef36ef47c1e3d96bc68d5469 401 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 4 399 3.7E-116 T 11-11-2016 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 Gferi_RS01410 a44934fb5bf2c29605320414d82f4ad4 388 SUPERFAMILY SSF53067 203 359 2.72E-9 T 11-11-2016 Gferi_RS01410 a44934fb5bf2c29605320414d82f4ad4 388 Gene3D G3DSA:3.30.420.40 58 222 1.3E-5 T 11-11-2016 Gferi_RS04850 e19c57e33e39eccf0aa64940b3016c16 204 SUPERFAMILY SSF53474 10 198 7.27E-19 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS04850 e19c57e33e39eccf0aa64940b3016c16 204 Pfam PF01738 Dienelactone hydrolase family 9 198 9.9E-25 T 11-11-2016 IPR002925 Dienelactone hydrolase GO:0016787 Gferi_RS04850 e19c57e33e39eccf0aa64940b3016c16 204 Gene3D G3DSA:3.40.50.1820 11 198 1.1E-20 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 SUPERFAMILY SSF140490 436 538 6.28E-41 T 11-11-2016 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 SUPERFAMILY SSF54862 524 596 2.71E-14 T 11-11-2016 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 Pfam PF10531 SLBB domain 356 402 3.0E-8 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 Gene3D G3DSA:3.40.30.10 5 98 1.1E-31 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 6 80 3.4E-7 T 11-11-2016 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 Pfam PF00037 4Fe-4S binding domain 574 596 5.2E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 SUPERFAMILY SSF142019 111 351 1.22E-95 T 11-11-2016 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 549 560 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 SUPERFAMILY SSF142984 352 435 8.24E-26 T 11-11-2016 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 Gene3D G3DSA:3.30.70.20 545 595 3.6E-13 T 11-11-2016 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 453 464 - T 11-11-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 159 330 2.3E-48 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 580 591 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 SUPERFAMILY SSF52833 5 94 1.05E-22 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 441 525 2.1E-35 T 11-11-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20780 d1c4a5fd17cba2ab969228b81e7d44c2 598 SMART SM00928 440 485 1.4E-25 T 11-11-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS06220 f9fc48c1318dc9ef8e9744fe721396ab 264 SUPERFAMILY SSF53850 8 261 6.18E-63 T 11-11-2016 Gferi_RS06220 f9fc48c1318dc9ef8e9744fe721396ab 264 Gene3D G3DSA:3.40.190.10 114 214 1.3E-28 T 11-11-2016 Gferi_RS06220 f9fc48c1318dc9ef8e9744fe721396ab 264 Gene3D G3DSA:3.40.190.10 219 262 5.9E-38 T 11-11-2016 Gferi_RS06220 f9fc48c1318dc9ef8e9744fe721396ab 264 Gene3D G3DSA:3.40.190.10 35 113 5.9E-38 T 11-11-2016 Gferi_RS06220 f9fc48c1318dc9ef8e9744fe721396ab 264 SMART SM00079 36 259 0.0048 T 11-11-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Gferi_RS06220 f9fc48c1318dc9ef8e9744fe721396ab 264 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 258 1.3E-59 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS06220 f9fc48c1318dc9ef8e9744fe721396ab 264 SMART SM00062 36 260 6.5E-71 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS18170 e8872dc92cd38f8e1d743705650eb0c1 451 Gene3D G3DSA:3.40.810.20 196 445 1.0E-41 T 11-11-2016 Gferi_RS18170 e8872dc92cd38f8e1d743705650eb0c1 451 SUPERFAMILY SSF100950 4 231 1.58E-21 T 11-11-2016 Gferi_RS18170 e8872dc92cd38f8e1d743705650eb0c1 451 Gene3D G3DSA:3.40.1080.10 6 189 3.6E-36 T 11-11-2016 Gferi_RS18170 e8872dc92cd38f8e1d743705650eb0c1 451 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 283 439 1.7E-52 T 11-11-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Gferi_RS18170 e8872dc92cd38f8e1d743705650eb0c1 451 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 5 193 6.8E-14 T 11-11-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 Gferi_RS18170 e8872dc92cd38f8e1d743705650eb0c1 451 SUPERFAMILY SSF100950 195 447 1.29E-57 T 11-11-2016 Gferi_RS15300 6e34ec0becbf8d663f44b776b2c71d56 609 Gene3D G3DSA:3.40.390.10 356 434 5.0E-6 T 11-11-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 Gferi_RS15300 6e34ec0becbf8d663f44b776b2c71d56 609 SUPERFAMILY SSF55486 13 589 5.22E-113 T 11-11-2016 Gferi_RS15300 6e34ec0becbf8d663f44b776b2c71d56 609 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 18 605 1.5E-192 T 11-11-2016 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 Gferi_RS15300 6e34ec0becbf8d663f44b776b2c71d56 609 Pfam PF08439 Oligopeptidase F 124 189 3.0E-17 T 11-11-2016 IPR013647 Oligopeptidase F, N-terminal domain Gferi_RS15300 6e34ec0becbf8d663f44b776b2c71d56 609 Gene3D G3DSA:1.10.287.830 193 233 3.0E-9 T 11-11-2016 Gferi_RS15300 6e34ec0becbf8d663f44b776b2c71d56 609 Pfam PF01432 Peptidase family M3 213 593 1.3E-65 T 11-11-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 Gferi_RS12135 1650ee5c296dddf37d2e8e7578f27c80 177 Pfam PF07670 Nucleoside recognition 47 145 4.2E-7 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS26610 ff9e8b55acd6bcddb62f66979311a006 70 Pfam PF11146 Protein of unknown function (DUF2905) 5 67 3.1E-25 T 11-11-2016 IPR021320 Protein of unknown function DUF2905 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 Pfam PF00072 Response regulator receiver domain 22 127 9.4E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 SMART SM00382 178 321 2.6E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 Pfam PF00158 Sigma-54 interaction domain 158 325 1.5E-66 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 SUPERFAMILY SSF52172 20 201 7.54E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 448 1.1E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 448 468 1.1E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 244 259 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 182 195 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 SUPERFAMILY SSF46689 372 467 3.58E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 SMART SM00448 19 129 2.0E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 Pfam PF02954 Bacterial regulatory protein, Fis family 426 465 4.0E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 SUPERFAMILY SSF52540 157 401 4.14E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 Gene3D G3DSA:1.10.8.60 331 404 3.1E-21 T 11-11-2016 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 Gene3D G3DSA:3.40.50.300 156 330 3.9E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 Gene3D G3DSA:3.40.50.2300 20 140 3.5E-29 T 11-11-2016 Gferi_RS16140 09b92dc6514a82203c160646b7e1896b 468 Gene3D G3DSA:1.10.10.60 420 467 2.4E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS15745 ed4e956a74b05861d5ad148a02630c73 164 TIGRFAM TIGR02084 leud: 3-isopropylmalate dehydratase, small subunit 4 159 2.7E-79 T 11-11-2016 IPR011824 Hydrolyase LeuD/DmdB, bacterial GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33 Gferi_RS15745 ed4e956a74b05861d5ad148a02630c73 164 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 4 159 3.1E-63 T 11-11-2016 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33 Gferi_RS15745 ed4e956a74b05861d5ad148a02630c73 164 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 2 162 39.336 T 11-11-2016 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33 Gferi_RS15745 ed4e956a74b05861d5ad148a02630c73 164 Pfam PF00694 Aconitase C-terminal domain 41 103 1.6E-18 T 11-11-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15745 ed4e956a74b05861d5ad148a02630c73 164 Gene3D G3DSA:3.20.19.10 5 159 1.2E-35 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS15745 ed4e956a74b05861d5ad148a02630c73 164 SUPERFAMILY SSF52016 2 160 5.49E-51 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS02230 a2e81cad153ed396837b5eec2a3e4d7c 164 Pfam PF14242 Domain of unknown function (DUF4342) 47 121 5.0E-26 T 11-11-2016 IPR025642 Domain of unknown function DUF4342 Gferi_RS02230 a2e81cad153ed396837b5eec2a3e4d7c 164 Gene3D G3DSA:1.10.8.10 1 43 1.9E-10 T 11-11-2016 Gferi_RS02230 a2e81cad153ed396837b5eec2a3e4d7c 164 SUPERFAMILY SSF46934 1 48 1.53E-10 T 11-11-2016 IPR009060 UBA-like GO:0005515 Gferi_RS10625 7d75d3109d8a568a37df56f3fafddc04 61 Pfam PF09388 Spo0E like sporulation regulatory protein 12 52 2.3E-8 T 11-11-2016 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 Gferi_RS10625 7d75d3109d8a568a37df56f3fafddc04 61 SUPERFAMILY SSF140500 8 56 1.57E-7 T 11-11-2016 Gferi_RS09835 06df6de6848f9d58c00b86af65f582b7 227 Pfam PF13545 Crp-like helix-turn-helix domain 159 225 5.0E-15 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS09835 06df6de6848f9d58c00b86af65f582b7 227 Pfam PF00027 Cyclic nucleotide-binding domain 38 114 1.5E-6 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS09835 06df6de6848f9d58c00b86af65f582b7 227 SUPERFAMILY SSF51206 4 147 3.67E-21 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS09835 06df6de6848f9d58c00b86af65f582b7 227 SUPERFAMILY SSF46785 156 226 2.73E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09835 06df6de6848f9d58c00b86af65f582b7 227 Gene3D G3DSA:1.10.10.10 156 226 6.0E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09835 06df6de6848f9d58c00b86af65f582b7 227 Gene3D G3DSA:2.60.120.10 8 150 1.6E-17 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS09835 06df6de6848f9d58c00b86af65f582b7 227 SMART SM00419 172 220 1.7E-5 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS24670 54a751972e4a067d9c4bff0aacbf7f95 219 SUPERFAMILY SSF56281 4 211 1.83E-41 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS24670 54a751972e4a067d9c4bff0aacbf7f95 219 Pfam PF00753 Metallo-beta-lactamase superfamily 4 200 3.6E-26 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS24670 54a751972e4a067d9c4bff0aacbf7f95 219 Gene3D G3DSA:3.60.15.10 4 214 3.3E-42 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS24670 54a751972e4a067d9c4bff0aacbf7f95 219 SMART SM00849 3 200 2.8E-28 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS15440 3c18b05f4e42384da23ead7a2f2a1399 213 SUPERFAMILY SSF52242 73 211 1.83E-40 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS15440 3c18b05f4e42384da23ead7a2f2a1399 213 Gene3D G3DSA:3.40.50.280 78 212 1.5E-46 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS15440 3c18b05f4e42384da23ead7a2f2a1399 213 Gene3D G3DSA:1.10.1240.10 7 77 1.2E-9 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS15440 3c18b05f4e42384da23ead7a2f2a1399 213 Pfam PF02310 B12 binding domain 92 195 1.8E-20 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS15440 3c18b05f4e42384da23ead7a2f2a1399 213 Pfam PF02607 B12 binding domain 7 79 2.1E-10 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS15440 3c18b05f4e42384da23ead7a2f2a1399 213 SMART SM01018 1 86 1.9E-16 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS15440 3c18b05f4e42384da23ead7a2f2a1399 213 SUPERFAMILY SSF47644 5 84 6.93E-16 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS23015 75d2ba500fb932c4d98044b247cef098 201 Pfam PF04367 Protein of unknown function (DUF502) 55 160 1.9E-33 T 11-11-2016 IPR007462 Protein of unknown function DUF502 Gferi_RS01835 b3b3ea5404af74d276676959948ce5a5 492 PIRSF PIRSF007466 1 492 6.1E-255 T 11-11-2016 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 Gferi_RS01835 b3b3ea5404af74d276676959948ce5a5 492 Pfam PF09547 Stage IV sporulation protein A (spore_IV_A) 2 492 1.3E-235 T 11-11-2016 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 Gferi_RS01835 b3b3ea5404af74d276676959948ce5a5 492 Gene3D G3DSA:3.40.50.300 16 232 1.7E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01835 b3b3ea5404af74d276676959948ce5a5 492 SUPERFAMILY SSF52540 18 236 1.37E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01835 b3b3ea5404af74d276676959948ce5a5 492 TIGRFAM TIGR02836 spore_IV_A: stage IV sporulation protein A 1 492 2.1E-246 T 11-11-2016 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 SUPERFAMILY SSF55920 127 354 1.44E-72 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 Gene3D G3DSA:3.40.350.10 1 120 1.2E-20 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 Pfam PF01321 Creatinase/Prolidase N-terminal domain 5 125 1.4E-16 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 SUPERFAMILY SSF53092 7 122 1.92E-18 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 PRINTS PR00599 Methionine aminopeptidase-1 signature 275 287 2.9E-5 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 PRINTS PR00599 Methionine aminopeptidase-1 signature 306 318 2.9E-5 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 PRINTS PR00599 Methionine aminopeptidase-1 signature 207 223 2.9E-5 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 Gene3D G3DSA:3.90.230.10 127 354 3.2E-81 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS12760 cfadba2325f51967d822fa3894873dbc 356 Pfam PF00557 Metallopeptidase family M24 135 338 1.7E-61 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS25215 110a5f5164b450ff9e64473906b2cfda 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 243 330 7.3E-30 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS25215 110a5f5164b450ff9e64473906b2cfda 331 SMART SM00382 50 250 9.0E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25215 110a5f5164b450ff9e64473906b2cfda 331 Pfam PF00005 ABC transporter 42 193 4.9E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25215 110a5f5164b450ff9e64473906b2cfda 331 Gene3D G3DSA:3.40.50.300 3 266 1.5E-77 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25215 110a5f5164b450ff9e64473906b2cfda 331 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS25215 110a5f5164b450ff9e64473906b2cfda 331 SUPERFAMILY SSF52540 31 265 1.54E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25215 110a5f5164b450ff9e64473906b2cfda 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 245 310 2.5E-18 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS23470 fac50832d5aba536323cc05e39820795 545 Gene3D G3DSA:3.40.50.300 436 475 3.4E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23470 fac50832d5aba536323cc05e39820795 545 Gene3D G3DSA:3.40.50.300 378 401 3.4E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23470 fac50832d5aba536323cc05e39820795 545 Gene3D G3DSA:3.40.50.300 166 222 3.4E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23470 fac50832d5aba536323cc05e39820795 545 Gene3D G3DSA:3.40.50.300 2 114 3.4E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23470 fac50832d5aba536323cc05e39820795 545 Pfam PF10088 Uncharacterised protein conserved in bacteria (DUF2326) 425 537 1.4E-13 T 11-11-2016 IPR018760 Protein of unknown function DUF2326 Gferi_RS23470 fac50832d5aba536323cc05e39820795 545 SUPERFAMILY SSF52540 13 286 4.78E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14210 819dcf0b1af9b12627d241dd92aa9dac 311 SUPERFAMILY SSF53822 36 311 1.21E-58 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS14210 819dcf0b1af9b12627d241dd92aa9dac 311 Gene3D G3DSA:3.40.50.2300 151 304 4.1E-39 T 11-11-2016 Gferi_RS14210 819dcf0b1af9b12627d241dd92aa9dac 311 Pfam PF13407 Periplasmic binding protein domain 42 292 7.9E-50 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS14210 819dcf0b1af9b12627d241dd92aa9dac 311 Gene3D G3DSA:3.40.50.2300 36 150 1.2E-26 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 SUPERFAMILY SSF103491 2 415 7.06E-129 T 11-11-2016 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 424 31.518 T 11-11-2016 IPR026593 Protein translocase subunit SecY Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 111 134 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 361 379 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 70 90 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 306 328 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 170 193 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 262 281 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 393 411 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PRINTS PR00303 Preprotein translocase SecY subunit signature 144 169 9.7E-98 T 11-11-2016 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 Pfam PF00344 SecY translocase 71 408 3.1E-120 T 11-11-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 PIRSF PIRSF004557 1 425 4.7E-126 T 11-11-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 ProSitePatterns PS00755 Protein secY signature 1. 71 90 - T 11-11-2016 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 Gene3D G3DSA:1.10.3370.10 3 425 7.4E-160 T 11-11-2016 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 419 2.0E-128 T 11-11-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS17495 815632f0a835715ea2f15f67f48f7833 425 ProSitePatterns PS00756 Protein secY signature 2. 163 180 - T 11-11-2016 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS23725 10264390696b3b493679d19059ed2ec9 73 Gene3D G3DSA:3.30.70.100 1 61 3.8E-16 T 11-11-2016 Gferi_RS23725 10264390696b3b493679d19059ed2ec9 73 SUPERFAMILY SSF55008 1 60 1.44E-15 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS23725 10264390696b3b493679d19059ed2ec9 73 Pfam PF00403 Heavy-metal-associated domain 5 65 2.1E-14 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Gene3D G3DSA:3.90.1170.50 3 122 8.0E-42 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 155 682 1.6E-140 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 SMART SM01008 22 134 6.8E-46 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 SUPERFAMILY SSF54665 3 150 2.75E-41 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 SUPERFAMILY SSF56003 138 745 1.03E-166 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Gene3D G3DSA:3.30.365.10 599 746 2.6E-63 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Gene3D G3DSA:3.30.365.10 352 437 2.6E-63 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 134 7.1E-31 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Gene3D G3DSA:3.30.365.10 123 169 1.7E-32 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Gene3D G3DSA:3.30.365.10 276 350 1.7E-32 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Gene3D G3DSA:3.30.365.10 438 594 9.0E-32 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS02965 6f83bcc257fad68b4ceeb3d151bbb492 755 Gene3D G3DSA:3.30.365.10 170 274 1.5E-31 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS05030 4e830275e0107574843c3f89f7179fe4 393 Gene3D G3DSA:1.20.1250.20 210 379 1.2E-16 T 11-11-2016 Gferi_RS05030 4e830275e0107574843c3f89f7179fe4 393 Pfam PF07690 Major Facilitator Superfamily 10 347 2.8E-24 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS05030 4e830275e0107574843c3f89f7179fe4 393 Gene3D G3DSA:1.20.1250.20 6 186 2.4E-16 T 11-11-2016 Gferi_RS05030 4e830275e0107574843c3f89f7179fe4 393 SUPERFAMILY SSF103473 6 383 6.28E-42 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS15595 f76fbfc8f80b3f73359e1806348e9a49 544 Gene3D G3DSA:3.90.76.10 52 221 5.8E-47 T 11-11-2016 Gferi_RS15595 f76fbfc8f80b3f73359e1806348e9a49 544 Gene3D G3DSA:3.10.105.10 295 513 1.2E-60 T 11-11-2016 Gferi_RS15595 f76fbfc8f80b3f73359e1806348e9a49 544 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 464 3.4E-87 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS15595 f76fbfc8f80b3f73359e1806348e9a49 544 SUPERFAMILY SSF53850 34 536 1.54E-129 T 11-11-2016 Gferi_RS15595 f76fbfc8f80b3f73359e1806348e9a49 544 PIRSF PIRSF002741 1 543 3.2E-114 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS06705 4dd565c1543a40d1b630d06c02359453 452 Gene3D G3DSA:3.50.50.60 255 258 1.6E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06705 4dd565c1543a40d1b630d06c02359453 452 Gene3D G3DSA:3.50.50.60 372 448 1.6E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06705 4dd565c1543a40d1b630d06c02359453 452 Gene3D G3DSA:3.50.50.60 6 219 1.6E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06705 4dd565c1543a40d1b630d06c02359453 452 Pfam PF12831 FAD dependent oxidoreductase 9 444 5.4E-107 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06705 4dd565c1543a40d1b630d06c02359453 452 SUPERFAMILY SSF51905 7 177 1.73E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06705 4dd565c1543a40d1b630d06c02359453 452 SUPERFAMILY SSF51905 368 422 1.73E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05615 e9c1c2aa5de0e89ca149f889222011ac 121 SUPERFAMILY SSF141523 8 120 4.19E-41 T 11-11-2016 Gferi_RS05615 e9c1c2aa5de0e89ca149f889222011ac 121 Pfam PF03734 L,D-transpeptidase catalytic domain 14 120 5.2E-27 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS05615 e9c1c2aa5de0e89ca149f889222011ac 121 Gene3D G3DSA:2.40.440.10 8 120 5.9E-45 T 11-11-2016 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 SUPERFAMILY SSF52540 3 203 1.87E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 PRINTS PR00315 GTP-binding elongation factor signature 52 60 3.7E-13 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 PRINTS PR00315 GTP-binding elongation factor signature 72 82 3.7E-13 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 PRINTS PR00315 GTP-binding elongation factor signature 124 133 3.7E-13 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 PRINTS PR00315 GTP-binding elongation factor signature 8 21 3.7E-13 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 Pfam PF00009 Elongation factor Tu GTP binding domain 4 196 3.1E-56 T 11-11-2016 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 135 2.5E-23 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 Gene3D G3DSA:2.40.50.250 483 577 7.5E-40 T 11-11-2016 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 Gene3D G3DSA:3.40.50.300 4 208 1.1E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 Pfam PF00679 Elongation factor G C-terminus 397 482 1.3E-24 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 6 599 2.1E-295 T 11-11-2016 IPR006298 GTP-binding protein TypA GO:0005525 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 Gene3D G3DSA:2.40.30.10 209 304 2.0E-24 T 11-11-2016 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 SUPERFAMILY SSF54980 303 388 2.66E-16 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 SUPERFAMILY SSF50447 180 302 1.58E-27 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 SMART SM00838 396 484 1.0E-4 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 SUPERFAMILY SSF54980 399 512 1.39E-29 T 11-11-2016 IPR009022 Elongation factor G, III-V domain Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 Gene3D G3DSA:3.30.70.870 305 400 2.8E-37 T 11-11-2016 Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 Gene3D G3DSA:3.30.70.240 401 482 2.3E-33 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site Gferi_RS16530 2888ffada2509ae30e4a1516eff3e040 603 Pfam PF03144 Elongation factor Tu domain 2 220 290 2.6E-9 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Gferi_RS17145 63cb7addb9dc1ee683fcb5f1325307e0 364 Gene3D G3DSA:3.40.1700.10 23 144 7.4E-31 T 11-11-2016 Gferi_RS17145 63cb7addb9dc1ee683fcb5f1325307e0 364 SUPERFAMILY SSF47781 293 359 1.46E-11 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS17145 63cb7addb9dc1ee683fcb5f1325307e0 364 Gene3D G3DSA:1.10.150.20 300 351 1.8E-9 T 11-11-2016 Gferi_RS17145 63cb7addb9dc1ee683fcb5f1325307e0 364 Pfam PF00633 Helix-hairpin-helix motif 321 347 1.9E-5 T 11-11-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Gferi_RS17145 63cb7addb9dc1ee683fcb5f1325307e0 364 Pfam PF10635 DisA bacterial checkpoint controller linker region 146 282 5.3E-55 T 11-11-2016 IPR018906 DNA integrity scanning, DisA, linker region Gferi_RS17145 63cb7addb9dc1ee683fcb5f1325307e0 364 Hamap MF_01438 DNA integrity scanning protein DisA [disA]. 8 360 45.555 T 11-11-2016 IPR023763 DNA integrity scanning protein, DisA Gferi_RS17145 63cb7addb9dc1ee683fcb5f1325307e0 364 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 29 140 3.1E-25 T 11-11-2016 IPR003390 DNA integrity scanning protein, DisA, N-terminal Gferi_RS17145 63cb7addb9dc1ee683fcb5f1325307e0 364 SUPERFAMILY SSF143597 22 145 3.01E-30 T 11-11-2016 Gferi_RS04655 677d420ecdc6e8ade3f0259d111526a4 394 Gene3D G3DSA:1.20.1250.20 6 189 1.6E-18 T 11-11-2016 Gferi_RS04655 677d420ecdc6e8ade3f0259d111526a4 394 Gene3D G3DSA:1.20.1250.20 194 375 7.7E-15 T 11-11-2016 Gferi_RS04655 677d420ecdc6e8ade3f0259d111526a4 394 Pfam PF07690 Major Facilitator Superfamily 10 337 1.6E-27 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS04655 677d420ecdc6e8ade3f0259d111526a4 394 SUPERFAMILY SSF103473 4 381 2.88E-45 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS04515 62c7ef2de3bc86d5b3989d85feb9adec 288 SUPERFAMILY SSF51735 2 283 1.41E-57 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04515 62c7ef2de3bc86d5b3989d85feb9adec 288 Pfam PF04321 RmlD substrate binding domain 3 284 1.0E-51 T 11-11-2016 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581 Gferi_RS04515 62c7ef2de3bc86d5b3989d85feb9adec 288 Gene3D G3DSA:3.40.50.720 1 233 4.2E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS03510 fa5137a88e719b246133fdc6edc4e414 128 Pfam PF08281 Sigma-70, region 4 70 121 1.9E-13 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03510 fa5137a88e719b246133fdc6edc4e414 128 Gene3D G3DSA:1.10.10.10 69 126 1.9E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03510 fa5137a88e719b246133fdc6edc4e414 128 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 40 125 1.2E-13 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS03510 fa5137a88e719b246133fdc6edc4e414 128 SUPERFAMILY SSF88659 73 127 2.24E-13 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26620 7fb39b95da2aa0955820deb91a67c9b7 341 Gene3D G3DSA:3.40.1780.10 178 340 3.3E-105 T 11-11-2016 Gferi_RS26620 7fb39b95da2aa0955820deb91a67c9b7 341 Gene3D G3DSA:3.40.1780.10 1 62 3.3E-105 T 11-11-2016 Gferi_RS26620 7fb39b95da2aa0955820deb91a67c9b7 341 Gene3D G3DSA:2.40.10.240 64 144 3.9E-30 T 11-11-2016 Gferi_RS26620 7fb39b95da2aa0955820deb91a67c9b7 341 Pfam PF02547 Queuosine biosynthesis protein 4 340 1.6E-146 T 11-11-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Gferi_RS26620 7fb39b95da2aa0955820deb91a67c9b7 341 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 341 46.583 T 11-11-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Gferi_RS26620 7fb39b95da2aa0955820deb91a67c9b7 341 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 340 1.8E-145 T 11-11-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Gferi_RS26620 7fb39b95da2aa0955820deb91a67c9b7 341 SUPERFAMILY SSF111337 1 340 1.09E-143 T 11-11-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 SUPERFAMILY SSF101386 364 463 8.34E-24 T 11-11-2016 Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 Gene3D G3DSA:3.40.1010.10 5 120 1.0E-12 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 SUPERFAMILY SSF101386 232 332 4.51E-25 T 11-11-2016 Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 TIGRFAM TIGR00444 mazG: MazG family protein 240 484 2.5E-93 T 11-11-2016 IPR011551 NTP pyrophosphohydrolase MazG Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 SUPERFAMILY SSF53790 5 258 1.31E-31 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 207 1.4E-23 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 PIRSF PIRSF002845 1 488 1.1E-197 T 11-11-2016 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 Gene3D G3DSA:1.10.287.1080 361 448 1.9E-13 T 11-11-2016 Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 Gene3D G3DSA:1.10.287.1080 224 302 1.2E-10 T 11-11-2016 Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 256 329 2.5E-27 T 11-11-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Gferi_RS16765 59e236fc22a379aacd91c5ac14c5ce93 495 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 395 453 2.0E-7 T 11-11-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Gferi_RS17030 1238be56f47d53ec9c6c6d232ceef617 93 Gene3D G3DSA:3.40.50.1100 49 90 5.0E-13 T 11-11-2016 Gferi_RS17030 1238be56f47d53ec9c6c6d232ceef617 93 SUPERFAMILY SSF53686 3 90 2.23E-23 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS17030 1238be56f47d53ec9c6c6d232ceef617 93 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 89 7.3E-15 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS15620 08a6c837cd5c17531d3b29546d555bb4 303 TIGRFAM TIGR01875 cas_MJ0381: CRISPR-associated autoregulator DevR family 6 222 1.6E-46 T 11-11-2016 IPR010154 CRISPR-associated protein Cas7/Cst2/DevR Gferi_RS15620 08a6c837cd5c17531d3b29546d555bb4 303 Pfam PF01905 CRISPR-associated negative auto-regulator DevR/Csa2 6 214 6.6E-32 T 11-11-2016 IPR010154 CRISPR-associated protein Cas7/Cst2/DevR Gferi_RS15620 08a6c837cd5c17531d3b29546d555bb4 303 TIGRFAM TIGR02585 cas_Cst2_DevR: CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP 7 298 3.5E-62 T 11-11-2016 IPR013414 CRISPR-associated protein Cas7, subtype I-B/Tneap Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 SMART SM00318 149 281 1.7E-35 T 11-11-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 Pfam PF00565 Staphylococcal nuclease homologue 174 280 9.6E-27 T 11-11-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 SUPERFAMILY SSF50199 151 284 1.31E-35 T 11-11-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 Pfam PF07833 Copper amine oxidase N-terminal domain 45 136 1.9E-33 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 SUPERFAMILY SSF55383 47 131 7.85E-29 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 Gene3D G3DSA:3.30.457.10 52 117 9.8E-30 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 Gene3D G3DSA:3.30.457.10 118 146 5.7E-9 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 Gene3D G3DSA:3.30.457.10 26 51 6.7E-5 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 Gene3D G3DSA:2.40.50.90 147 285 1.4E-37 T 11-11-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 ProSitePatterns PS01123 Thermonuclease family signature 1. 160 184 - T 11-11-2016 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Gferi_RS01095 d62203f0c9328143c3eb4ad5300741f6 394 ProSitePatterns PS01284 Thermonuclease family signature 2. 223 233 - T 11-11-2016 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Gferi_RS26295 5bf83716ff7548e829cdaa4347cf4017 210 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 105 203 3.8E-33 T 11-11-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 Gferi_RS26295 5bf83716ff7548e829cdaa4347cf4017 210 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 63 205 9.1E-33 T 11-11-2016 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Gferi_RS26295 5bf83716ff7548e829cdaa4347cf4017 210 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 6 207 21.501 T 11-11-2016 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Gferi_RS26295 5bf83716ff7548e829cdaa4347cf4017 210 SUPERFAMILY SSF63848 102 206 7.06E-33 T 11-11-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 Gferi_RS26295 5bf83716ff7548e829cdaa4347cf4017 210 Gene3D G3DSA:2.160.20.70 90 206 2.9E-40 T 11-11-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 Gferi_RS18845 9d2c93a7ee4b8bea5397a4ec103656b2 180 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 12 176 1.6E-36 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS18845 9d2c93a7ee4b8bea5397a4ec103656b2 180 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 6 178 2.9E-26 T 11-11-2016 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 Gferi_RS18845 9d2c93a7ee4b8bea5397a4ec103656b2 180 Gene3D G3DSA:3.40.920.10 3 179 4.3E-55 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS18845 9d2c93a7ee4b8bea5397a4ec103656b2 180 SUPERFAMILY SSF53323 3 178 1.14E-43 T 11-11-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Gferi_RS15625 edd3f724de43ecd50554434b52eb7b6f 225 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 4 136 1.6E-13 T 11-11-2016 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 Gferi_RS15625 edd3f724de43ecd50554434b52eb7b6f 225 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 3 43 7.8E-15 T 11-11-2016 IPR013422 CRISPR-associated protein Cas5, N-terminal Gferi_RS15625 edd3f724de43ecd50554434b52eb7b6f 225 TIGRFAM TIGR01895 cas_Cas5t: CRISPR-associated protein Cas5, subtype I-B/TNEAP 1 201 7.0E-43 T 11-11-2016 IPR013337 CRISPR-associated protein Cas5, Tneap type Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 84 117 - T 11-11-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 SUPERFAMILY SSF69618 254 504 2.88E-74 T 11-11-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 SUPERFAMILY SSF53790 3 257 1.19E-79 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 241 4.4E-93 T 11-11-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 Gene3D G3DSA:3.30.950.10 120 259 6.9E-54 T 11-11-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 Gene3D G3DSA:3.40.1010.10 4 119 2.7E-42 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 Gene3D G3DSA:3.40.50.10090 381 504 6.7E-32 T 11-11-2016 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 Gene3D G3DSA:3.40.50.10090 260 380 2.1E-39 T 11-11-2016 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 9 23 - T 11-11-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 217 1.2E-47 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24300 6b4f675b0c8712d9abd58a43ebb69f27 505 Pfam PF02602 Uroporphyrinogen-III synthase HemD 268 496 5.7E-68 T 11-11-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 Pfam PF16745 RsgA N-terminal domain 3 57 1.6E-23 T 11-11-2016 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 SUPERFAMILY SSF50249 1 64 1.5E-15 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 Pfam PF03193 Protein of unknown function, DUF258 60 224 4.5E-64 T 11-11-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 39 283 7.2E-82 T 11-11-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 SUPERFAMILY SSF52540 66 289 2.04E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 Gene3D G3DSA:3.40.50.300 65 222 3.2E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 2 289 39.28 T 11-11-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 Gene3D G3DSA:1.10.40.50 227 289 3.9E-24 T 11-11-2016 Gferi_RS01675 bb1dd8544b91a1a4ae6325393453b520 291 Gene3D G3DSA:2.40.50.140 1 61 2.3E-25 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 Gene3D G3DSA:3.30.300.10 133 233 3.8E-34 T 11-11-2016 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 Pfam PF02772 S-adenosylmethionine synthetase, central domain 116 232 2.6E-37 T 11-11-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 Gene3D G3DSA:3.30.300.10 245 383 2.4E-57 T 11-11-2016 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 Gene3D G3DSA:3.30.300.10 10 132 2.7E-32 T 11-11-2016 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 1 382 47.061 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 11-11-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 SUPERFAMILY SSF55973 2 101 2.83E-35 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 SUPERFAMILY SSF55973 115 233 2.2E-42 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 PIRSF PIRSF000497 1 383 9.0E-157 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 11-11-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 381 2.1E-144 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 SUPERFAMILY SSF55973 235 382 2.83E-60 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 235 370 2.2E-58 T 11-11-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS23545 a20e5c83bee855d8be6c1f35b485999e 387 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 91 2.7E-30 T 11-11-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 21 40 5.6E-36 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 5.6E-36 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 297 319 5.6E-36 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 187 205 5.6E-36 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 287 5.6E-36 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 SUPERFAMILY SSF51905 233 371 3.16E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 SUPERFAMILY SSF51905 14 69 3.16E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 SUPERFAMILY SSF51905 116 204 3.16E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PIRSF PIRSF000350 2 467 3.5E-87 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 19 468 1.2E-159 T 11-11-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 151 160 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 52 67 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 286 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 20 42 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 187 212 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 312 319 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 453 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 426 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 347 368 1.5E-66 T 11-11-2016 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 351 458 2.2E-35 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 Gene3D G3DSA:3.50.50.60 154 338 7.2E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 Gene3D G3DSA:3.50.50.60 18 153 2.8E-38 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 53 63 - T 11-11-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 19 332 1.1E-67 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 SUPERFAMILY SSF55424 349 469 6.53E-37 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Gferi_RS17230 bc6dc8b8bc429318b500af6f1fd6acde 473 Gene3D G3DSA:3.30.390.30 339 465 1.0E-44 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS16330 ee85e83c00aee9c13c2f2d5c48dfb1fe 202 Gene3D G3DSA:3.40.50.300 5 170 7.5E-39 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16330 ee85e83c00aee9c13c2f2d5c48dfb1fe 202 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 170 1.1E-34 T 11-11-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Gferi_RS16330 ee85e83c00aee9c13c2f2d5c48dfb1fe 202 SUPERFAMILY SSF52540 4 178 4.62E-27 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 26 650 2.8E-223 T 11-11-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 Gene3D G3DSA:3.40.50.300 442 625 5.8E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 Pfam PF17191 RecG wedge domain 7 161 7.0E-30 T 11-11-2016 IPR033454 RecG, wedge domain Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 Pfam PF00271 Helicase conserved C-terminal domain 455 576 6.1E-21 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 Gene3D G3DSA:3.40.50.300 250 441 5.2E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 SUPERFAMILY SSF52540 178 441 1.19E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 SMART SM00487 257 446 5.2E-35 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 Gene3D G3DSA:2.40.50.140 44 139 6.3E-17 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 Pfam PF00270 DEAD/DEAH box helicase 263 421 9.0E-19 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 SMART SM00490 492 577 1.0E-22 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 SUPERFAMILY SSF52540 380 586 1.73E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01645 4cef07064678d1f1d7b865bf08212d13 687 SUPERFAMILY SSF50249 3 169 5.65E-40 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS03585 731b95dd63e1366962b54e06003ec962 328 SUPERFAMILY SSF53901 3 327 7.83E-71 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS03585 731b95dd63e1366962b54e06003ec962 328 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 326 64.173 T 11-11-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS03585 731b95dd63e1366962b54e06003ec962 328 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 185 1.2E-26 T 11-11-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS03585 731b95dd63e1366962b54e06003ec962 328 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 3 326 6.0E-111 T 11-11-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS03585 731b95dd63e1366962b54e06003ec962 328 Gene3D G3DSA:3.40.47.10 2 161 4.0E-60 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS03585 731b95dd63e1366962b54e06003ec962 328 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 238 326 3.8E-34 T 11-11-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS03585 731b95dd63e1366962b54e06003ec962 328 Gene3D G3DSA:3.40.47.10 162 326 1.0E-50 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 655 0.0 T 11-11-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Gene3D G3DSA:3.30.2060.10 159 228 1.0E-9 T 11-11-2016 Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Pfam PF00271 Helicase conserved C-terminal domain 442 542 2.1E-18 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Pfam PF04851 Type III restriction enzyme, res subunit 14 137 3.1E-11 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Gene3D G3DSA:4.10.860.10 611 657 2.0E-13 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Gene3D G3DSA:3.40.50.300 5 88 4.8E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Gene3D G3DSA:3.40.50.300 277 337 4.8E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Gene3D G3DSA:3.40.50.300 387 408 4.8E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 SUPERFAMILY SSF46600 614 656 2.62E-10 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 657 44.168 T 11-11-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 SUPERFAMILY SSF52540 36 81 8.38E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 SUPERFAMILY SSF52540 457 580 8.38E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 SUPERFAMILY SSF52540 1 413 2.1E-135 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 SMART SM00490 458 544 1.9E-19 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Pfam PF02151 UvrB/uvrC motif 623 656 6.7E-10 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Gene3D G3DSA:3.40.50.300 417 579 2.8E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 Pfam PF12344 Ultra-violet resistance protein B 550 592 1.5E-21 T 11-11-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain Gferi_RS20685 beabc0e36877e019efd67c89b9361bfa 659 SMART SM00487 8 424 2.1E-26 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS12770 5df808c150dd2ef37719e889057512db 103 Gene3D G3DSA:3.40.50.2300 2 101 1.4E-35 T 11-11-2016 Gferi_RS12770 5df808c150dd2ef37719e889057512db 103 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 7 97 7.6E-18 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS12770 5df808c150dd2ef37719e889057512db 103 SUPERFAMILY SSF52794 4 101 2.27E-32 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS12770 5df808c150dd2ef37719e889057512db 103 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 6 90 4.8E-27 T 11-11-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 Gene3D G3DSA:3.40.190.10 90 171 5.6E-19 T 11-11-2016 Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 SUPERFAMILY SSF46785 5 86 1.63E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 Pfam PF03466 LysR substrate binding domain 90 301 1.5E-29 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 4.1E-15 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 Gene3D G3DSA:3.40.190.10 172 256 3.9E-11 T 11-11-2016 Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 SUPERFAMILY SSF53850 91 306 9.48E-30 T 11-11-2016 Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 Gene3D G3DSA:1.10.10.10 5 86 5.0E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.5E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.5E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS08405 9fd5e0f05fb9c5bfe31fdc290372b101 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.5E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 Gene3D G3DSA:3.40.50.150 92 180 9.3E-6 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 Gene3D G3DSA:3.10.290.10 5 91 4.8E-23 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 Pfam PF01728 FtsJ-like methyltransferase 61 240 1.3E-20 T 11-11-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 SMART SM00363 5 70 5.1E-11 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 SUPERFAMILY SSF55174 3 70 8.1E-14 T 11-11-2016 Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 PIRSF PIRSF005578 1 266 1.1E-105 T 11-11-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 6 237 1.7E-83 T 11-11-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 Pfam PF01479 S4 domain 5 48 1.7E-9 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS00240 50aa409bc0e83ef4746e663e964941df 269 SUPERFAMILY SSF53335 51 243 1.08E-22 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15765 9ac076e6115f06a96dc4b4811c555470 245 Gene3D G3DSA:3.30.70.580 1 106 3.5E-36 T 11-11-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS15765 9ac076e6115f06a96dc4b4811c555470 245 PIRSF PIRSF001430 1 245 2.7E-80 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS15765 9ac076e6115f06a96dc4b4811c555470 245 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 240 4.4E-61 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS15765 9ac076e6115f06a96dc4b4811c555470 245 SUPERFAMILY SSF55120 1 245 9.35E-80 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS15765 9ac076e6115f06a96dc4b4811c555470 245 Pfam PF01416 tRNA pseudouridine synthase 8 105 4.1E-11 T 11-11-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS15765 9ac076e6115f06a96dc4b4811c555470 245 Pfam PF01416 tRNA pseudouridine synthase 144 245 1.1E-26 T 11-11-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS15765 9ac076e6115f06a96dc4b4811c555470 245 Gene3D G3DSA:3.30.70.660 107 243 2.6E-44 T 11-11-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS15765 9ac076e6115f06a96dc4b4811c555470 245 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 35.424 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 SUPERFAMILY SSF46894 156 220 4.08E-15 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 Gene3D G3DSA:3.40.50.2300 1 162 1.4E-35 T 11-11-2016 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 Pfam PF00072 Response regulator receiver domain 4 115 4.5E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 202 1.3E-8 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 190 1.3E-8 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 174 1.3E-8 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 SMART SM00421 157 214 1.7E-16 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 SUPERFAMILY SSF52172 1 123 2.28E-32 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 214 1.8E-14 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 Gene3D G3DSA:1.10.10.10 163 219 1.4E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06820 79246ff2f40ba4e300371d86d87e54f1 220 SMART SM00448 2 115 5.9E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00840 ef6f73707e16c322195e359648ef25a2 205 Gene3D G3DSA:3.40.1550.10 7 204 7.6E-68 T 11-11-2016 IPR028976 CheC-like domain Gferi_RS00840 ef6f73707e16c322195e359648ef25a2 205 SUPERFAMILY SSF103039 6 203 6.28E-58 T 11-11-2016 IPR028976 CheC-like domain Gferi_RS00840 ef6f73707e16c322195e359648ef25a2 205 Pfam PF04509 CheC-like family 11 46 1.3E-14 T 11-11-2016 IPR007597 CheC-like protein GO:0016787 Gferi_RS00840 ef6f73707e16c322195e359648ef25a2 205 Pfam PF04509 CheC-like family 109 144 8.2E-11 T 11-11-2016 IPR007597 CheC-like protein GO:0016787 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 Gene3D G3DSA:3.40.228.10 133 311 9.3E-68 T 11-11-2016 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 SUPERFAMILY SSF53706 4 553 7.2E-150 T 11-11-2016 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 Gene3D G3DSA:2.20.25.90 2 61 5.8E-17 T 11-11-2016 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 Gene3D G3DSA:3.40.50.740 312 499 9.9E-47 T 11-11-2016 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 Gene3D G3DSA:3.40.50.740 62 132 9.9E-47 T 11-11-2016 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 SUPERFAMILY SSF50692 514 658 6.33E-27 T 11-11-2016 IPR009010 Aspartate decarboxylase-like domain Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 SMART SM00926 3 58 2.1E-14 T 11-11-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 Gene3D G3DSA:2.40.40.20 532 658 7.5E-27 T 11-11-2016 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 Pfam PF00384 Molybdopterin oxidoreductase 61 463 1.2E-53 T 11-11-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 7 58 6.4E-12 T 11-11-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS04695 e6b1740cc2c739dbdb8c8a775a430a56 661 Pfam PF01568 Molydopterin dinucleotide binding domain 552 652 4.5E-16 T 11-11-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 PRINTS PR01402 Mutator MutX protein signature 3 21 1.7E-31 T 11-11-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 PRINTS PR01402 Mutator MutX protein signature 133 153 1.7E-31 T 11-11-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 PRINTS PR01402 Mutator MutX protein signature 21 36 1.7E-31 T 11-11-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 PRINTS PR01402 Mutator MutX protein signature 97 117 1.7E-31 T 11-11-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 PRINTS PR01402 Mutator MutX protein signature 67 93 1.7E-31 T 11-11-2016 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 SUPERFAMILY SSF55811 3 129 1.1E-25 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 Gene3D G3DSA:3.90.79.10 1 144 2.2E-36 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 Pfam PF00293 NUDIX domain 6 126 5.4E-17 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 PRINTS PR00502 NUDIX hydrolase family signature 32 46 1.3E-5 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 PRINTS PR00502 NUDIX hydrolase family signature 46 61 1.3E-5 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Gferi_RS05535 f917b550779b3dab862c632e8299016e 153 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS08455 338b801079aa7ca445b0716e915ed4f6 467 Pfam PF03606 C4-dicarboxylate anaerobic carrier 14 462 1.5E-103 T 11-11-2016 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 Gferi_RS03625 2d9eda50b0085f9903adf94887c5f008 421 PIRSF PIRSF001434 1 421 4.9E-121 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS03625 2d9eda50b0085f9903adf94887c5f008 421 Gene3D G3DSA:3.40.640.10 2 283 1.5E-99 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS03625 2d9eda50b0085f9903adf94887c5f008 421 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 4 417 3.6E-171 T 11-11-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 Gferi_RS03625 2d9eda50b0085f9903adf94887c5f008 421 SUPERFAMILY SSF53383 1 414 1.08E-109 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS03625 2d9eda50b0085f9903adf94887c5f008 421 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 417 1.9E-121 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS03625 2d9eda50b0085f9903adf94887c5f008 421 Gene3D G3DSA:3.90.1150.10 285 418 2.4E-45 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 Pfam PF12833 Helix-turn-helix domain 164 244 1.1E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 Gene3D G3DSA:1.10.10.60 139 193 7.5E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 SMART SM00448 2 116 1.4E-24 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 Gene3D G3DSA:1.10.10.60 194 245 7.3E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 SUPERFAMILY SSF52172 1 121 5.27E-31 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 194 238 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 Gene3D G3DSA:3.40.50.2300 1 122 3.5E-32 T 11-11-2016 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 SMART SM00342 157 242 1.6E-26 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 SUPERFAMILY SSF46689 193 244 4.93E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 Pfam PF00072 Response regulator receiver domain 4 112 7.3E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 211 226 8.4E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS08100 34e7d6543feb3138df3cc9a995efd9b5 248 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 226 242 8.4E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS07925 7e5ac847021fc7abf439c843422bc77b 382 Pfam PF00149 Calcineurin-like phosphoesterase 158 325 4.1E-14 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS07925 7e5ac847021fc7abf439c843422bc77b 382 Gene3D G3DSA:3.60.21.10 157 335 4.3E-22 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS07925 7e5ac847021fc7abf439c843422bc77b 382 SUPERFAMILY SSF56300 159 380 8.52E-33 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 214 455 2.0E-60 T 11-11-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 5 573 1.1E-188 T 11-11-2016 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969 Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 SUPERFAMILY SSF52518 202 462 6.31E-71 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 Gene3D G3DSA:3.40.920.10 3 179 1.0E-32 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 SUPERFAMILY SSF53323 5 225 2.62E-34 T 11-11-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 Gene3D G3DSA:3.40.50.970 193 390 6.6E-81 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 14 179 3.5E-34 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 Gene3D G3DSA:3.40.50.920 470 577 1.1E-6 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS09095 b21395b45b66a6159f523733677ed8c8 578 SUPERFAMILY SSF52922 470 577 1.39E-9 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 Gene3D G3DSA:1.10.10.10 765 824 3.7E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 SUPERFAMILY SSF46894 761 825 1.46E-17 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 Gene3D G3DSA:3.40.50.300 5 137 8.9E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 Pfam PF00196 Bacterial regulatory proteins, luxR family 766 819 7.2E-16 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 Gene3D G3DSA:1.25.40.10 488 593 6.3E-10 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 SUPERFAMILY SSF52540 7 224 9.2E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 766 780 1.6E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 780 796 1.6E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 796 808 1.6E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 SMART SM00421 763 820 4.9E-21 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS22005 77343236e03bcf7804dd9c109a7c1d44 826 SUPERFAMILY SSF48452 518 738 9.1E-6 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS07265 6f64498852f3fd727ae3638d09a8b399 182 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 4 168 8.2E-9 T 11-11-2016 IPR019127 Exosortase EpsH-related Gferi_RS07265 6f64498852f3fd727ae3638d09a8b399 182 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 72 171 8.4E-8 T 11-11-2016 IPR026392 Exosortase/Archaeosortase domain Gferi_RS07265 6f64498852f3fd727ae3638d09a8b399 182 TIGRFAM TIGR04287 exosort_XrtK: exosortase K 13 175 1.1E-32 T 11-11-2016 IPR027551 Exosortase K Gferi_RS02850 c1eb11461fc3c0bb2f483321780f1490 315 Pfam PF01112 Asparaginase 16 282 1.8E-65 T 11-11-2016 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 Gferi_RS02850 c1eb11461fc3c0bb2f483321780f1490 315 SUPERFAMILY SSF56235 5 284 5.4E-78 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS19075 07b6e2293412ba807987b3786cce5ae3 186 Gene3D G3DSA:1.10.10.10 117 177 8.6E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19075 07b6e2293412ba807987b3786cce5ae3 186 Gene3D G3DSA:1.10.1740.10 4 107 1.4E-11 T 11-11-2016 Gferi_RS19075 07b6e2293412ba807987b3786cce5ae3 186 Pfam PF04542 Sigma-70 region 2 46 89 1.7E-6 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19075 07b6e2293412ba807987b3786cce5ae3 186 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 176 2.6E-21 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19075 07b6e2293412ba807987b3786cce5ae3 186 SUPERFAMILY SSF88659 124 177 1.7E-10 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19075 07b6e2293412ba807987b3786cce5ae3 186 SUPERFAMILY SSF88946 4 96 1.67E-11 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19075 07b6e2293412ba807987b3786cce5ae3 186 Pfam PF08281 Sigma-70, region 4 121 173 1.8E-8 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 37 53 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 53 74 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 80 94 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 251 270 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 152 166 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 170 189 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 96 109 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 127 143 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 296 322 1.8E-54 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 Pfam PF13416 Bacterial extracellular solute-binding protein 47 315 4.3E-37 T 11-11-2016 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 Gene3D G3DSA:3.40.190.10 148 300 8.8E-58 T 11-11-2016 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 Gene3D G3DSA:3.40.190.10 34 147 1.6E-26 T 11-11-2016 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 SUPERFAMILY SSF53850 33 348 1.86E-92 T 11-11-2016 Gferi_RS15800 34f7f48e10a4b1c381df8e3a5a91be41 350 PIRSF PIRSF019574 1 350 4.6E-126 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS25000 209801b068ccc87a2e4291bb54999de1 382 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 192 206 - T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS25000 209801b068ccc87a2e4291bb54999de1 382 PIRSF PIRSF001434 1 382 1.4E-135 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS25000 209801b068ccc87a2e4291bb54999de1 382 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 382 5.0E-149 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS25000 209801b068ccc87a2e4291bb54999de1 382 Gene3D G3DSA:3.90.1150.10 249 381 1.2E-46 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS25000 209801b068ccc87a2e4291bb54999de1 382 Gene3D G3DSA:3.40.640.10 8 248 1.7E-91 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS25000 209801b068ccc87a2e4291bb54999de1 382 SUPERFAMILY SSF53383 9 382 5.35E-111 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS00145 33a377e3a645f2bd198ff1edb08b99dd 284 Gene3D G3DSA:3.40.50.150 55 280 3.8E-78 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS00145 33a377e3a645f2bd198ff1edb08b99dd 284 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 79 92 - T 11-11-2016 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Gferi_RS00145 33a377e3a645f2bd198ff1edb08b99dd 284 Gene3D G3DSA:2.30.140.10 1 54 4.4E-20 T 11-11-2016 Gferi_RS00145 33a377e3a645f2bd198ff1edb08b99dd 284 Pfam PF01564 Spermine/spermidine synthase 4 238 3.9E-66 T 11-11-2016 Gferi_RS00145 33a377e3a645f2bd198ff1edb08b99dd 284 TIGRFAM TIGR00417 speE: spermidine synthase 4 274 1.3E-88 T 11-11-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Gferi_RS00145 33a377e3a645f2bd198ff1edb08b99dd 284 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 3 280 38.202 T 11-11-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Gferi_RS00145 33a377e3a645f2bd198ff1edb08b99dd 284 SUPERFAMILY SSF53335 3 280 1.09E-79 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 SUPERFAMILY SSF47384 149 233 2.16E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 Pfam PF00512 His Kinase A (phospho-acceptor) domain 167 230 1.0E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 Pfam PF00672 HAMP domain 88 153 8.0E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 Gene3D G3DSA:3.30.565.10 234 384 2.2E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 SMART SM00387 277 387 7.6E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 SMART SM00388 166 232 2.3E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 SUPERFAMILY SSF55874 222 374 1.15E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 385 2.9E-10 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24545 24af019e3f93908e7b2aa108b64f8a01 387 Gene3D G3DSA:1.10.287.130 157 227 1.2E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14360 9c9347cb68c444570a2888ef7aae74cc 287 Gene3D G3DSA:3.10.310.10 135 268 5.7E-35 T 11-11-2016 Gferi_RS14360 9c9347cb68c444570a2888ef7aae74cc 287 Pfam PF02567 Phenazine biosynthesis-like protein 16 276 3.9E-63 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS14360 9c9347cb68c444570a2888ef7aae74cc 287 PIRSF PIRSF016184 8 280 1.0E-52 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS14360 9c9347cb68c444570a2888ef7aae74cc 287 SUPERFAMILY SSF54506 10 279 4.19E-69 T 11-11-2016 Gferi_RS14360 9c9347cb68c444570a2888ef7aae74cc 287 Gene3D G3DSA:3.10.310.10 10 134 4.0E-44 T 11-11-2016 Gferi_RS14360 9c9347cb68c444570a2888ef7aae74cc 287 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 12 279 2.6E-41 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS12030 65e4b4ebb8d8f479e216480680cd1e4c 152 Pfam PF11385 Protein of unknown function (DUF3189) 2 146 6.4E-40 T 11-11-2016 IPR021525 Protein of unknown function DUF3189 Gferi_RS02600 50d82e68790cbf0963964db7f47bc7c8 412 SMART SM00387 297 409 1.7E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02600 50d82e68790cbf0963964db7f47bc7c8 412 SUPERFAMILY SSF55874 279 407 6.42E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02600 50d82e68790cbf0963964db7f47bc7c8 412 Gene3D G3DSA:3.30.565.10 272 406 9.9E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02600 50d82e68790cbf0963964db7f47bc7c8 412 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 348 6.1E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02600 50d82e68790cbf0963964db7f47bc7c8 412 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 406 6.1E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02600 50d82e68790cbf0963964db7f47bc7c8 412 PRINTS PR00344 Bacterial sensor protein C-terminal signature 352 362 6.1E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02600 50d82e68790cbf0963964db7f47bc7c8 412 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 387 6.1E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02600 50d82e68790cbf0963964db7f47bc7c8 412 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 301 408 7.5E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16295 3832de06281facef45cad498b03765f0 519 SUPERFAMILY SSF100950 8 247 1.93E-71 T 11-11-2016 Gferi_RS16295 3832de06281facef45cad498b03765f0 519 Gene3D G3DSA:3.40.1080.10 6 247 7.3E-101 T 11-11-2016 Gferi_RS16295 3832de06281facef45cad498b03765f0 519 PIRSF PIRSF009451 5 519 3.0E-234 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Gferi_RS16295 3832de06281facef45cad498b03765f0 519 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 33 517 4.3E-223 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Gferi_RS16295 3832de06281facef45cad498b03765f0 519 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 51 517 2.1E-206 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Gferi_RS16295 3832de06281facef45cad498b03765f0 519 SUPERFAMILY SSF100950 251 516 2.67E-57 T 11-11-2016 Gferi_RS16295 3832de06281facef45cad498b03765f0 519 Gene3D G3DSA:3.40.810.20 251 492 2.3E-72 T 11-11-2016 Gferi_RS17805 8b92f54fa58c014a0ebaf8bfa5673e57 395 Pfam PF14319 Transposase zinc-binding domain 6 112 9.5E-40 T 11-11-2016 IPR026889 Transposase zinc-binding domain Gferi_RS17805 8b92f54fa58c014a0ebaf8bfa5673e57 395 Pfam PF04986 Putative transposase 138 323 1.9E-66 T 11-11-2016 IPR007069 Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 Gferi_RS04955 8b92f54fa58c014a0ebaf8bfa5673e57 395 Pfam PF14319 Transposase zinc-binding domain 6 112 9.5E-40 T 11-11-2016 IPR026889 Transposase zinc-binding domain Gferi_RS04955 8b92f54fa58c014a0ebaf8bfa5673e57 395 Pfam PF04986 Putative transposase 138 323 1.9E-66 T 11-11-2016 IPR007069 Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 SUPERFAMILY SSF50249 2 63 2.4E-12 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 197 27.88 T 11-11-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 Gene3D G3DSA:1.10.150.20 67 135 3.3E-26 T 11-11-2016 Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 Gene3D G3DSA:2.40.50.140 3 65 1.5E-19 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 Pfam PF01330 RuvA N terminal domain 3 62 5.6E-17 T 11-11-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 SUPERFAMILY SSF47781 65 133 2.34E-18 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 SUPERFAMILY SSF46929 151 196 3.66E-9 T 11-11-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 Pfam PF07499 RuvA, C-terminal domain 153 196 1.3E-9 T 11-11-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 3 195 2.2E-43 T 11-11-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 Gene3D G3DSA:1.10.8.10 154 197 3.1E-12 T 11-11-2016 Gferi_RS26600 f32cac77fcfd701cf39ad8723fcdbd86 198 Pfam PF14520 Helix-hairpin-helix domain 72 130 1.0E-14 T 11-11-2016 Gferi_RS02970 e6654d76b566365b5e59287434671704 293 SUPERFAMILY SSF56176 6 173 2.0E-38 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Gferi_RS02970 e6654d76b566365b5e59287434671704 293 SUPERFAMILY SSF55447 181 287 1.14E-14 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS02970 e6654d76b566365b5e59287434671704 293 Gene3D G3DSA:3.30.390.50 179 286 1.6E-17 T 11-11-2016 Gferi_RS02970 e6654d76b566365b5e59287434671704 293 SMART SM01092 180 284 4.7E-11 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS02970 e6654d76b566365b5e59287434671704 293 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 8 172 1.9E-34 T 11-11-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Gferi_RS02970 e6654d76b566365b5e59287434671704 293 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 181 282 4.4E-16 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS02970 e6654d76b566365b5e59287434671704 293 Gene3D G3DSA:3.30.43.10 7 51 2.3E-4 T 11-11-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Gferi_RS02970 e6654d76b566365b5e59287434671704 293 Gene3D G3DSA:3.30.465.10 58 173 1.0E-27 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Gferi_RS25250 b65b2d3dc9bc132ada3ea158c83e500a 344 Pfam PF13407 Periplasmic binding protein domain 41 310 7.7E-38 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS25250 b65b2d3dc9bc132ada3ea158c83e500a 344 Gene3D G3DSA:3.40.50.2300 36 157 1.2E-27 T 11-11-2016 Gferi_RS25250 b65b2d3dc9bc132ada3ea158c83e500a 344 SUPERFAMILY SSF53822 37 330 4.71E-49 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS25250 b65b2d3dc9bc132ada3ea158c83e500a 344 Gene3D G3DSA:3.40.50.2300 158 328 4.1E-24 T 11-11-2016 Gferi_RS12820 0f13413cd34ce656addf460ac3ec1f3d 291 Hamap MF_00082_B Acetylglutamate kinase [argB]. 20 288 35.736 T 11-11-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS12820 0f13413cd34ce656addf460ac3ec1f3d 291 Pfam PF00696 Amino acid kinase family 22 264 4.2E-50 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS12820 0f13413cd34ce656addf460ac3ec1f3d 291 PIRSF PIRSF000728 7 288 1.2E-111 T 11-11-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS12820 0f13413cd34ce656addf460ac3ec1f3d 291 TIGRFAM TIGR00761 argB: acetylglutamate kinase 23 262 8.5E-79 T 11-11-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS12820 0f13413cd34ce656addf460ac3ec1f3d 291 SUPERFAMILY SSF53633 4 288 3.8E-87 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS12820 0f13413cd34ce656addf460ac3ec1f3d 291 Gene3D G3DSA:3.40.1160.10 20 287 5.6E-101 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS11950 06bdf6ec5f6e4438069f5d26ee83b55b 231 SMART SM00382 39 227 1.7E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11950 06bdf6ec5f6e4438069f5d26ee83b55b 231 SUPERFAMILY SSF52540 10 230 2.34E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11950 06bdf6ec5f6e4438069f5d26ee83b55b 231 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS11950 06bdf6ec5f6e4438069f5d26ee83b55b 231 Gene3D G3DSA:3.40.50.300 9 231 2.6E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11950 06bdf6ec5f6e4438069f5d26ee83b55b 231 Pfam PF00005 ABC transporter 30 178 5.0E-38 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 Pfam PF01327 Polypeptide deformylase 4 145 2.0E-39 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 PRINTS PR01576 Peptide deformylase signature 34 63 1.6E-24 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 PRINTS PR01576 Peptide deformylase signature 118 147 1.6E-24 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 PRINTS PR01576 Peptide deformylase signature 87 98 1.6E-24 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 PRINTS PR01576 Peptide deformylase signature 99 117 1.6E-24 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 Gene3D G3DSA:3.90.45.10 5 146 3.4E-46 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 SUPERFAMILY SSF56420 3 146 7.46E-48 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 PIRSF PIRSF004749 1 150 8.1E-40 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 146 1.3E-40 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS19145 eb47307d178d73bea2b92b787cecc84a 152 Hamap MF_00163 Peptide deformylase [def]. 2 151 25.436 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01610 c31febb7d9e80e21a6c98735f718ade4 412 SUPERFAMILY SSF52374 162 217 3.01E-16 T 11-11-2016 Gferi_RS01610 c31febb7d9e80e21a6c98735f718ade4 412 SUPERFAMILY SSF52374 4 107 3.01E-16 T 11-11-2016 Gferi_RS01610 c31febb7d9e80e21a6c98735f718ade4 412 Hamap MF_01539 UPF0348 protein . 2 410 36.45 T 11-11-2016 IPR008513 Uncharacterised protein family UPF0348 Gferi_RS01610 c31febb7d9e80e21a6c98735f718ade4 412 Pfam PF05636 HIGH Nucleotidyl Transferase 1 394 2.0E-141 T 11-11-2016 IPR008513 Uncharacterised protein family UPF0348 Gferi_RS01610 c31febb7d9e80e21a6c98735f718ade4 412 Gene3D G3DSA:3.40.50.620 1 243 2.2E-78 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS18260 0035957313af08d10474ff740939456b 304 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 290 2.3E-36 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 124 136 5.0E-55 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 230 251 5.0E-55 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 36 51 5.0E-55 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 5.0E-55 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 56 66 5.0E-55 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 264 282 5.0E-55 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 139 163 5.0E-55 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 102 110 5.0E-55 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 2.8E-30 T 11-11-2016 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.8E-30 T 11-11-2016 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 2.8E-30 T 11-11-2016 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 276 2.8E-30 T 11-11-2016 Gferi_RS18260 0035957313af08d10474ff740939456b 304 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 2.8E-30 T 11-11-2016 Gferi_RS18260 0035957313af08d10474ff740939456b 304 SUPERFAMILY SSF51905 2 301 3.83E-47 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 Gene3D G3DSA:3.50.50.60 228 301 9.7E-8 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 131 151 - T 11-11-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 Gene3D G3DSA:3.50.50.60 126 227 3.9E-26 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18260 0035957313af08d10474ff740939456b 304 Gene3D G3DSA:3.50.50.60 2 125 2.1E-26 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 SUPERFAMILY SSF46604 87 132 5.75E-8 T 11-11-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 87 131 1.5E-14 T 11-11-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 131 9.7E-33 T 11-11-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 Gene3D G3DSA:1.20.5.440 91 132 2.4E-14 T 11-11-2016 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 89 9.0E-16 T 11-11-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 Gene3D G3DSA:2.60.15.10 4 90 1.2E-27 T 11-11-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 130 21.899 T 11-11-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 SUPERFAMILY SSF51344 4 85 1.83E-21 T 11-11-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11010 a2f7e044cd77dad8cdb8f60907660ae5 134 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 83 7.0E-26 T 11-11-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 345 3.8E-66 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 5 462 8.1E-260 T 11-11-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 Gene3D G3DSA:2.40.10.170 3 77 3.8E-31 T 11-11-2016 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 Gene3D G3DSA:1.10.1140.10 349 463 2.1E-53 T 11-11-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 SUPERFAMILY SSF50615 3 77 8.63E-25 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 336 345 - T 11-11-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 SUPERFAMILY SSF52540 79 350 1.84E-92 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 8 75 3.0E-20 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 SUPERFAMILY SSF47917 348 463 5.23E-53 T 11-11-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 Hamap MF_01347 ATP synthase subunit beta [atpB]. 3 463 58.628 T 11-11-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 PIRSF PIRSF039072 1 465 1.8E-260 T 11-11-2016 Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 SMART SM00382 144 330 5.8E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11015 fc6a9ac194efe1fc5e36b11ab6181638 465 Gene3D G3DSA:3.40.50.300 78 347 4.0E-111 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22320 7d42a17554320eee7441eb4fd1fdab1c 372 SUPERFAMILY SSF54826 1 128 4.86E-23 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22320 7d42a17554320eee7441eb4fd1fdab1c 372 SMART SM00922 142 238 4.0E-13 T 11-11-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Gferi_RS22320 7d42a17554320eee7441eb4fd1fdab1c 372 Gene3D G3DSA:3.20.20.120 129 352 3.7E-58 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22320 7d42a17554320eee7441eb4fd1fdab1c 372 Gene3D G3DSA:3.30.390.10 1 128 4.3E-32 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22320 7d42a17554320eee7441eb4fd1fdab1c 372 SUPERFAMILY SSF51604 112 362 2.62E-63 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22320 7d42a17554320eee7441eb4fd1fdab1c 372 Pfam PF13378 Enolase C-terminal domain-like 146 358 8.5E-51 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22320 7d42a17554320eee7441eb4fd1fdab1c 372 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 32 124 1.7E-13 T 11-11-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Gferi_RS01855 d5270d68a16f69c005c9bd1325c62979 446 SUPERFAMILY SSF50156 9 99 4.21E-9 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS01855 d5270d68a16f69c005c9bd1325c62979 446 Pfam PF04459 Protein of unknown function (DUF512) 224 426 1.2E-73 T 11-11-2016 IPR007549 Domain of unknown function DUF512 Gferi_RS01855 d5270d68a16f69c005c9bd1325c62979 446 Gene3D G3DSA:2.30.42.10 8 65 4.7E-6 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS01855 d5270d68a16f69c005c9bd1325c62979 446 SUPERFAMILY SSF102114 91 261 1.01E-14 T 11-11-2016 Gferi_RS01855 d5270d68a16f69c005c9bd1325c62979 446 Gene3D G3DSA:3.20.20.70 132 268 1.4E-9 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS20795 4b356230484f11d4ce3b86b2cdea78eb 267 Pfam PF02634 FdhD/NarQ family 25 258 4.0E-76 T 11-11-2016 IPR003786 Protein FdhD GO:0016783 Gferi_RS20795 4b356230484f11d4ce3b86b2cdea78eb 267 PIRSF PIRSF015626 2 263 8.4E-79 T 11-11-2016 IPR003786 Protein FdhD GO:0016783 Gferi_RS20795 4b356230484f11d4ce3b86b2cdea78eb 267 Hamap MF_00187 Sulfurtransferase FdhD [fdhD]. 1 259 31.261 T 11-11-2016 IPR003786 Protein FdhD GO:0016783 Gferi_RS20795 4b356230484f11d4ce3b86b2cdea78eb 267 Gene3D G3DSA:3.10.20.10 27 109 2.0E-18 T 11-11-2016 Gferi_RS20795 4b356230484f11d4ce3b86b2cdea78eb 267 SUPERFAMILY SSF53927 4 259 1.68E-75 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 Gferi_RS20795 4b356230484f11d4ce3b86b2cdea78eb 267 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 22 259 3.0E-63 T 11-11-2016 IPR003786 Protein FdhD GO:0016783 Gferi_RS20795 4b356230484f11d4ce3b86b2cdea78eb 267 Gene3D G3DSA:3.40.140.10 123 263 1.2E-52 T 11-11-2016 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 SMART SM00388 267 330 3.0E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 SMART SM00387 376 480 1.1E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 SMART SM00304 214 266 5.9E-6 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 SUPERFAMILY SSF158472 216 263 2.88E-6 T 11-11-2016 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 426 5.7E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 477 5.7E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 440 5.7E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 459 5.7E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 SUPERFAMILY SSF55874 319 480 6.42E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 Pfam PF00512 His Kinase A (phospho-acceptor) domain 268 329 4.9E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 SUPERFAMILY SSF47384 250 328 8.83E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 Gene3D G3DSA:1.10.287.130 257 316 5.6E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 376 478 2.0E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 Gene3D G3DSA:3.30.565.10 317 481 1.7E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14485 e566b053bc635b99fca7adcd17123264 485 Pfam PF00672 HAMP domain 195 262 3.5E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14400 f1545826df17f506e81e630866e4a4ec 220 Gene3D G3DSA:1.20.120.530 76 215 2.1E-30 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS14400 f1545826df17f506e81e630866e4a4ec 220 Pfam PF07729 FCD domain 84 206 2.6E-27 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS14400 f1545826df17f506e81e630866e4a4ec 220 SUPERFAMILY SSF46785 13 77 1.11E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14400 f1545826df17f506e81e630866e4a4ec 220 SUPERFAMILY SSF48008 79 214 3.92E-28 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS14400 f1545826df17f506e81e630866e4a4ec 220 Gene3D G3DSA:1.10.10.10 12 74 1.4E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14400 f1545826df17f506e81e630866e4a4ec 220 SMART SM00345 15 73 6.6E-10 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14400 f1545826df17f506e81e630866e4a4ec 220 SMART SM00895 83 207 2.4E-21 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS14400 f1545826df17f506e81e630866e4a4ec 220 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 73 8.1E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22095 c061da8da69f3a8a9c4fbaa88c76a9f2 243 SUPERFAMILY SSF110296 49 227 6.8E-18 T 11-11-2016 Gferi_RS22095 c061da8da69f3a8a9c4fbaa88c76a9f2 243 Pfam PF02012 BNR/Asp-box repeat 214 223 0.0049 T 11-11-2016 IPR002860 BNR repeat Gferi_RS22095 c061da8da69f3a8a9c4fbaa88c76a9f2 243 Pfam PF02012 BNR/Asp-box repeat 163 172 0.025 T 11-11-2016 IPR002860 BNR repeat Gferi_RS22095 c061da8da69f3a8a9c4fbaa88c76a9f2 243 Pfam PF02012 BNR/Asp-box repeat 54 63 0.0048 T 11-11-2016 IPR002860 BNR repeat Gferi_RS22095 c061da8da69f3a8a9c4fbaa88c76a9f2 243 Pfam PF02012 BNR/Asp-box repeat 112 121 0.0049 T 11-11-2016 IPR002860 BNR repeat Gferi_RS22095 c061da8da69f3a8a9c4fbaa88c76a9f2 243 Gene3D G3DSA:2.120.10.10 53 225 7.1E-16 T 11-11-2016 IPR011040 Sialidases Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 Gferi_RS19035 d976398f79da8c0c89261a00223a1be6 449 SUPERFAMILY SSF46785 3 71 3.27E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19035 d976398f79da8c0c89261a00223a1be6 449 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 2.2E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19035 d976398f79da8c0c89261a00223a1be6 449 Gene3D G3DSA:1.10.10.10 2 66 2.4E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19035 d976398f79da8c0c89261a00223a1be6 449 SMART SM00345 8 67 8.5E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19035 d976398f79da8c0c89261a00223a1be6 449 Gene3D G3DSA:3.40.640.10 111 324 1.2E-58 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS19035 d976398f79da8c0c89261a00223a1be6 449 Gene3D G3DSA:3.90.1150.10 325 429 7.3E-6 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS19035 d976398f79da8c0c89261a00223a1be6 449 SUPERFAMILY SSF53383 63 442 4.72E-79 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS19035 d976398f79da8c0c89261a00223a1be6 449 Pfam PF00155 Aminotransferase class I and II 112 434 3.9E-32 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS19745 22ec545c496a8eb83bfdea254d6b39b6 313 Gene3D G3DSA:3.40.50.1360 56 310 3.9E-64 T 11-11-2016 Gferi_RS19745 22ec545c496a8eb83bfdea254d6b39b6 313 SUPERFAMILY SSF100950 63 311 5.62E-58 T 11-11-2016 Gferi_RS19745 22ec545c496a8eb83bfdea254d6b39b6 313 Pfam PF04198 Putative sugar-binding domain 63 309 2.1E-58 T 11-11-2016 IPR007324 Sugar-binding domain, putative GO:0030246 Gferi_RS27055 573014c8e9304a3391a1b3723aa885e7 436 Pfam PF01882 Protein of unknown function DUF58 191 274 2.3E-19 T 11-11-2016 IPR002881 Domain of unknown function DUF58 Gferi_RS27055 573014c8e9304a3391a1b3723aa885e7 436 SUPERFAMILY SSF53300 227 340 3.5E-8 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS02930 5e4a8f3cf91f0d942bc2e30848b49a9d 339 SMART SM00829 8 337 4.9E-5 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Gferi_RS02930 5e4a8f3cf91f0d942bc2e30848b49a9d 339 Gene3D G3DSA:3.90.180.10 3 163 8.2E-43 T 11-11-2016 IPR011032 GroES-like Gferi_RS02930 5e4a8f3cf91f0d942bc2e30848b49a9d 339 Pfam PF00107 Zinc-binding dehydrogenase 172 299 2.1E-29 T 11-11-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Gferi_RS02930 5e4a8f3cf91f0d942bc2e30848b49a9d 339 Gene3D G3DSA:3.40.50.720 164 283 6.2E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02930 5e4a8f3cf91f0d942bc2e30848b49a9d 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 130 7.1E-26 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Gferi_RS02930 5e4a8f3cf91f0d942bc2e30848b49a9d 339 SUPERFAMILY SSF51735 138 304 3.33E-41 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02930 5e4a8f3cf91f0d942bc2e30848b49a9d 339 SUPERFAMILY SSF50129 3 170 2.89E-40 T 11-11-2016 IPR011032 GroES-like Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 Pfam PF01871 AMMECR1 305 465 2.3E-38 T 11-11-2016 IPR002733 AMMECR1 domain Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 TIGRFAM TIGR04336 AmmeMemoSam_B: AmmeMemoRadiSam system protein B 118 258 8.1E-9 T 11-11-2016 IPR002737 MEMO1 family Reactome: R-HSA-6785631 Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 SUPERFAMILY SSF53213 4 284 2.49E-46 T 11-11-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 268 3.8E-49 T 11-11-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 Gene3D G3DSA:3.30.700.20 299 412 2.6E-40 T 11-11-2016 IPR027485 AMMECR1, N-terminal Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 Gene3D G3DSA:3.30.1490.150 413 463 6.2E-11 T 11-11-2016 Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 Gene3D G3DSA:3.40.830.10 1 277 7.4E-32 T 11-11-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 SUPERFAMILY SSF143447 301 469 2.75E-47 T 11-11-2016 IPR002733 AMMECR1 domain Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 TIGRFAM TIGR04335 AmmeMemoSam_A: AmmeMemoRadiSam system protein A 303 465 1.7E-39 T 11-11-2016 IPR027623 AmmeMemoRadiSam system protein A Gferi_RS17630 cb4d7fafe3bf9ecc16cdd38d4dfa05d8 469 TIGRFAM TIGR00296 TIGR00296: uncharacterized protein, PH0010 family 300 467 5.9E-27 T 11-11-2016 IPR023473 AMMECR1 Gferi_RS22455 53f303624f00837b204b2ebe5b54f1e0 68 SMART SM01409 8 60 3.2E-13 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Gferi_RS22455 53f303624f00837b204b2ebe5b54f1e0 68 SUPERFAMILY SSF63562 1 62 5.36E-19 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Gferi_RS22455 53f303624f00837b204b2ebe5b54f1e0 68 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 58 2.6E-10 T 11-11-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS22455 53f303624f00837b204b2ebe5b54f1e0 68 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 12.427 T 11-11-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS22455 53f303624f00837b204b2ebe5b54f1e0 68 Gene3D G3DSA:3.90.940.10 1 63 3.7E-16 T 11-11-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Gferi_RS22455 53f303624f00837b204b2ebe5b54f1e0 68 Pfam PF01192 RNA polymerase Rpb6 9 60 4.5E-12 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Gferi_RS18870 5b56002a9df3a6a5c3a77582ff528a0b 535 Pfam PF02554 Carbon starvation protein CstA 1 351 4.3E-136 T 11-11-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 Gferi_RS18870 5b56002a9df3a6a5c3a77582ff528a0b 535 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 374 489 3.7E-39 T 11-11-2016 IPR025299 CstA, C-terminal domain Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 SUPERFAMILY SSF46600 188 241 2.88E-15 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 385 550 8.5E-50 T 11-11-2016 IPR001162 UvrC family homology region Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 Pfam PF02151 UvrB/uvrC motif 202 236 1.0E-11 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 SMART SM00465 14 96 3.0E-25 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 Pfam PF01541 GIY-YIG catalytic domain 15 91 3.1E-11 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 SUPERFAMILY SSF47781 531 616 5.72E-19 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 Hamap MF_00203 UvrABC system protein C [uvrC]. 1 615 29.741 T 11-11-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 Gene3D G3DSA:3.40.1440.10 14 94 7.6E-13 T 11-11-2016 IPR027299 GIY-YIG domain Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 Pfam PF12826 Helix-hairpin-helix motif 569 618 1.4E-7 T 11-11-2016 Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 6 597 2.1E-191 T 11-11-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 Gene3D G3DSA:1.10.150.20 563 616 6.6E-21 T 11-11-2016 Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 SUPERFAMILY SSF82771 14 98 6.02E-26 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily Gferi_RS20740 5cf2182994344bb5332109d9724762cf 621 Gene3D G3DSA:4.10.860.10 181 242 5.5E-20 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 5.0E-38 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 219 3.2E-24 T 11-11-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 338 357 - T 11-11-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 SUPERFAMILY SSF47203 229 381 4.35E-62 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 Gene3D G3DSA:1.20.140.10 224 381 2.3E-74 T 11-11-2016 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 Gene3D G3DSA:1.10.540.10 1 119 1.7E-46 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 PIRSF PIRSF016578 3 379 1.7E-23 T 11-11-2016 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 Gene3D G3DSA:2.40.110.10 121 223 3.1E-38 T 11-11-2016 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 SUPERFAMILY SSF56645 2 244 1.05E-87 T 11-11-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 Gferi_RS09640 350a9d63d6a08b1a30f5f45bed720714 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 379 2.4E-53 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 Gferi_RS05740 1eecd1f6de72b0b4d0de33c274ecca49 133 Pfam PF06541 Putative ABC-transporter type IV 5 129 5.9E-15 T 11-11-2016 IPR010540 Putative ABC-transporter type IV CmpB/TMEM229 Gferi_RS07560 9ef48f366945e421ad713c20bc43924f 261 SUPERFAMILY SSF52540 5 251 1.02E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07560 9ef48f366945e421ad713c20bc43924f 261 Gene3D G3DSA:3.40.50.300 4 254 7.1E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07560 9ef48f366945e421ad713c20bc43924f 261 SMART SM00382 30 229 2.4E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07560 9ef48f366945e421ad713c20bc43924f 261 Pfam PF00005 ABC transporter 22 180 2.2E-25 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25545 9d26df1480c8493eb1fc4960d0a0a079 413 Pfam PF05193 Peptidase M16 inactive domain 171 333 5.1E-27 T 11-11-2016 IPR007863 Peptidase M16, C-terminal Gferi_RS25545 9d26df1480c8493eb1fc4960d0a0a079 413 Pfam PF00675 Insulinase (Peptidase family M16) 25 164 5.2E-30 T 11-11-2016 IPR011765 Peptidase M16, N-terminal Gferi_RS25545 9d26df1480c8493eb1fc4960d0a0a079 413 SUPERFAMILY SSF63411 236 413 1.67E-24 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS25545 9d26df1480c8493eb1fc4960d0a0a079 413 Gene3D G3DSA:3.30.830.10 238 413 1.4E-25 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 Gferi_RS25545 9d26df1480c8493eb1fc4960d0a0a079 413 Gene3D G3DSA:3.30.830.10 11 216 5.1E-60 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 Gferi_RS25545 9d26df1480c8493eb1fc4960d0a0a079 413 SUPERFAMILY SSF63411 7 212 3.0E-58 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS16930 2e60c69c68af1e5d1632b5e669436eb5 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 318 7.0E-127 T 11-11-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 Gferi_RS16930 2e60c69c68af1e5d1632b5e669436eb5 321 PIRSF PIRSF006621 1 321 1.6E-111 T 11-11-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Gferi_RS16930 2e60c69c68af1e5d1632b5e669436eb5 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 11-11-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 Gferi_RS16930 2e60c69c68af1e5d1632b5e669436eb5 321 SUPERFAMILY SSF51395 10 317 1.17E-92 T 11-11-2016 Gferi_RS16930 2e60c69c68af1e5d1632b5e669436eb5 321 Gene3D G3DSA:3.20.20.70 7 244 1.2E-90 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS16930 2e60c69c68af1e5d1632b5e669436eb5 321 Pfam PF01207 Dihydrouridine synthase (Dus) 14 313 3.5E-105 T 11-11-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Gferi_RS16930 2e60c69c68af1e5d1632b5e669436eb5 321 Gene3D G3DSA:1.10.1200.80 252 319 4.8E-25 T 11-11-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 Gferi_RS20410 15234fb0db32ea4601f2577fbf9ae77e 294 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 8 291 7.2E-74 T 11-11-2016 IPR011862 Phosphate binding protein GO:0006810 Gferi_RS20410 15234fb0db32ea4601f2577fbf9ae77e 294 SUPERFAMILY SSF53850 49 288 1.05E-72 T 11-11-2016 Gferi_RS20410 15234fb0db32ea4601f2577fbf9ae77e 294 Pfam PF12849 PBP superfamily domain 41 281 5.0E-42 T 11-11-2016 IPR024370 PBP domain Gferi_RS20410 15234fb0db32ea4601f2577fbf9ae77e 294 Gene3D G3DSA:3.40.190.10 257 290 3.1E-16 T 11-11-2016 Gferi_RS20410 15234fb0db32ea4601f2577fbf9ae77e 294 Gene3D G3DSA:3.40.190.10 8 130 3.1E-16 T 11-11-2016 Gferi_RS20410 15234fb0db32ea4601f2577fbf9ae77e 294 Gene3D G3DSA:3.40.190.10 131 256 1.1E-45 T 11-11-2016 Gferi_RS23275 ac9bb1aa4a3845a5f08a3a90d6dc359e 108 SUPERFAMILY SSF55331 1 108 1.56E-34 T 11-11-2016 IPR014347 Tautomerase/MIF superfamily Gferi_RS23275 ac9bb1aa4a3845a5f08a3a90d6dc359e 108 Gene3D G3DSA:3.30.429.10 1 108 3.8E-41 T 11-11-2016 Gferi_RS23275 ac9bb1aa4a3845a5f08a3a90d6dc359e 108 Pfam PF08921 Domain of unknown function (DUF1904) 1 107 4.0E-40 T 11-11-2016 IPR015017 Protein of unknown function DUF1904 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 202 1.4E-41 T 11-11-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 Hamap MF_01973 Lon protease [lon]. 11 774 72.554 T 11-11-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 Gene3D G3DSA:3.40.50.300 309 502 2.0E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 SUPERFAMILY SSF54211 597 772 5.31E-57 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 SUPERFAMILY SSF52540 312 591 1.19E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 675 694 1.4E-53 T 11-11-2016 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 705 724 1.4E-53 T 11-11-2016 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 728 746 1.4E-53 T 11-11-2016 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 597 613 1.4E-53 T 11-11-2016 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 358 377 1.4E-53 T 11-11-2016 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 572 774 5.5E-96 T 11-11-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 SMART SM00382 350 495 5.8E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 SMART SM00464 10 204 4.4E-68 T 11-11-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 SUPERFAMILY SSF88697 10 202 7.7E-44 T 11-11-2016 IPR015947 PUA-like domain Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 PIRSF PIRSF001174 1 777 0.0 T 11-11-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 Gene3D G3DSA:3.30.230.10 592 773 2.9E-73 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 TIGRFAM TIGR00763 lon: endopeptidase La 12 773 0.0 T 11-11-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 678 686 - T 11-11-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 Gene3D G3DSA:1.10.8.60 503 586 1.5E-33 T 11-11-2016 Gferi_RS09260 abf86964d2953ff196a2da9d6f574030 782 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 354 491 5.1E-23 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS03855 42251644836d8004b430b06a78bf901d 301 SUPERFAMILY SSF109709 124 235 2.75E-10 T 11-11-2016 Gferi_RS03855 42251644836d8004b430b06a78bf901d 301 Gene3D G3DSA:3.90.1530.10 25 125 1.9E-23 T 11-11-2016 Gferi_RS03855 42251644836d8004b430b06a78bf901d 301 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 29 147 1.3E-18 T 11-11-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Gferi_RS03855 42251644836d8004b430b06a78bf901d 301 SUPERFAMILY SSF110849 32 122 5.58E-19 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS03855 42251644836d8004b430b06a78bf901d 301 SMART SM00470 32 122 1.1E-11 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS03855 42251644836d8004b430b06a78bf901d 301 Pfam PF02195 ParB-like nuclease domain 33 121 1.9E-13 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS15450 1db4b1e8ba0ab6bda1d96d56fdb7561f 428 Pfam PF04412 Protein of unknown function (DUF521) 3 416 1.2E-112 T 11-11-2016 IPR007506 Domain of unknown function DUF521 Gferi_RS15450 1db4b1e8ba0ab6bda1d96d56fdb7561f 428 Gene3D G3DSA:3.30.499.10 302 379 7.1E-5 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS00940 b57267545338882f050bb0ab444ce481 448 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 429 1.2E-84 T 11-11-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G Gferi_RS00940 b57267545338882f050bb0ab444ce481 448 Pfam PF07559 Flagellar basal body protein FlaE 189 322 3.5E-7 T 11-11-2016 IPR011491 Flagellar hook protein FlgE Gferi_RS00940 b57267545338882f050bb0ab444ce481 448 SUPERFAMILY SSF117143 91 408 6.02E-52 T 11-11-2016 Gferi_RS00940 b57267545338882f050bb0ab444ce481 448 Pfam PF00460 Flagella basal body rod protein 5 35 5.9E-12 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Gferi_RS00940 b57267545338882f050bb0ab444ce481 448 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 369 446 3.7E-24 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Gferi_RS14915 2537ba0b969c39189552b0d13d1fe0a4 365 SUPERFAMILY SSF53822 48 342 1.09E-64 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS14915 2537ba0b969c39189552b0d13d1fe0a4 365 Gene3D G3DSA:3.40.50.2300 49 167 2.8E-29 T 11-11-2016 Gferi_RS14915 2537ba0b969c39189552b0d13d1fe0a4 365 Pfam PF13407 Periplasmic binding protein domain 52 308 4.7E-56 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS14915 2537ba0b969c39189552b0d13d1fe0a4 365 Gene3D G3DSA:3.40.50.2300 168 342 8.5E-39 T 11-11-2016 Gferi_RS20745 ea5964afddeb629c44adb6366b30f36e 288 Pfam PF02603 HPr Serine kinase N terminus 5 108 2.5E-33 T 11-11-2016 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Gferi_RS20745 ea5964afddeb629c44adb6366b30f36e 288 SUPERFAMILY SSF75138 6 112 5.89E-30 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS20745 ea5964afddeb629c44adb6366b30f36e 288 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 1 287 39.296 T 11-11-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Gferi_RS20745 ea5964afddeb629c44adb6366b30f36e 288 Gene3D G3DSA:3.40.1390.20 7 112 4.3E-35 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS20745 ea5964afddeb629c44adb6366b30f36e 288 SUPERFAMILY SSF53795 113 277 5.49E-42 T 11-11-2016 Gferi_RS20745 ea5964afddeb629c44adb6366b30f36e 288 Gene3D G3DSA:3.40.50.300 115 287 3.8E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20745 ea5964afddeb629c44adb6366b30f36e 288 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 5 284 5.1E-115 T 11-11-2016 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 Gferi_RS20745 ea5964afddeb629c44adb6366b30f36e 288 Pfam PF07475 HPr Serine kinase C-terminal domain 111 279 5.9E-76 T 11-11-2016 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 Gferi_RS13275 1a882a0d718a7baf9cf06c6790c24c9b 69 Pfam PF01809 Haemolytic domain 2 67 4.5E-32 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor Gferi_RS13275 1a882a0d718a7baf9cf06c6790c24c9b 69 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 69 1.0E-18 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor Gferi_RS13275 1a882a0d718a7baf9cf06c6790c24c9b 69 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 67 1.9E-29 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor Gferi_RS13275 1a882a0d718a7baf9cf06c6790c24c9b 69 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 24.658 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor Gferi_RS13275 1a882a0d718a7baf9cf06c6790c24c9b 69 SMART SM01234 1 68 1.0E-45 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor Gferi_RS19800 6493fc02b980c7c8ff2a746d3faa8de8 392 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 185 388 4.9E-25 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS19800 6493fc02b980c7c8ff2a746d3faa8de8 392 SUPERFAMILY SSF51726 13 118 3.31E-41 T 11-11-2016 Gferi_RS19800 6493fc02b980c7c8ff2a746d3faa8de8 392 SUPERFAMILY SSF51726 156 391 3.31E-41 T 11-11-2016 Gferi_RS19800 6493fc02b980c7c8ff2a746d3faa8de8 392 Gene3D G3DSA:3.20.20.210 6 121 8.1E-44 T 11-11-2016 Gferi_RS19800 6493fc02b980c7c8ff2a746d3faa8de8 392 Gene3D G3DSA:3.20.20.210 156 390 8.1E-44 T 11-11-2016 Gferi_RS15940 1384747f050801952ed2c0f14e15a05f 155 SUPERFAMILY SSF51182 34 148 5.09E-27 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS15940 1384747f050801952ed2c0f14e15a05f 155 Pfam PF06249 Ethanolamine utilisation protein EutQ 7 148 9.6E-53 T 11-11-2016 IPR010424 Ethanolamine utilisation EutQ Gferi_RS15940 1384747f050801952ed2c0f14e15a05f 155 Gene3D G3DSA:2.60.120.10 29 149 4.2E-43 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS23955 d4ff7d676f36b2dbe64a74591f2844c4 221 SUPERFAMILY SSF48498 97 221 5.78E-17 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS23955 d4ff7d676f36b2dbe64a74591f2844c4 221 SUPERFAMILY SSF46689 23 100 6.67E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS23955 d4ff7d676f36b2dbe64a74591f2844c4 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 75 4.0E-14 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS23955 d4ff7d676f36b2dbe64a74591f2844c4 221 Gene3D G3DSA:1.10.10.60 25 73 4.8E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS23955 d4ff7d676f36b2dbe64a74591f2844c4 221 Gene3D G3DSA:1.10.357.10 74 221 5.6E-20 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS13550 6d7dd8764ccef36128ec996495e42c52 240 SMART SM00563 73 187 9.2E-39 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Gferi_RS13550 6d7dd8764ccef36128ec996495e42c52 240 Pfam PF01553 Acyltransferase 60 184 6.1E-31 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Gferi_RS13550 6d7dd8764ccef36128ec996495e42c52 240 SUPERFAMILY SSF69593 3 237 4.97E-52 T 11-11-2016 Gferi_RS13550 6d7dd8764ccef36128ec996495e42c52 240 Gene3D G3DSA:3.40.1130.10 40 235 3.6E-37 T 11-11-2016 Gferi_RS13550 6d7dd8764ccef36128ec996495e42c52 240 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 57 184 1.1E-36 T 11-11-2016 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS20315 d96c5b81cb22ec8cfbf6442a919951d8 453 Pfam PF12704 MacB-like periplasmic core domain 11 190 7.3E-15 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS00070 506fe7acb98f1644a8b783b54ce35a95 380 Gene3D G3DSA:3.40.50.920 270 379 6.3E-26 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS00070 506fe7acb98f1644a8b783b54ce35a95 380 SUPERFAMILY SSF52922 270 379 9.85E-27 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS00070 506fe7acb98f1644a8b783b54ce35a95 380 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 18 249 1.6E-71 T 11-11-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Gferi_RS00070 506fe7acb98f1644a8b783b54ce35a95 380 Gene3D G3DSA:3.40.50.970 3 195 1.0E-82 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS00070 506fe7acb98f1644a8b783b54ce35a95 380 SUPERFAMILY SSF52518 6 261 2.09E-72 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS00070 506fe7acb98f1644a8b783b54ce35a95 380 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 278 372 9.1E-27 T 11-11-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 5 617 45.258 T 11-11-2016 IPR022946 Uncharacterised protein family UPF0313 Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 Gene3D G3DSA:3.80.30.20 301 535 1.9E-36 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 SMART SM00729 299 550 2.6E-9 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 Pfam PF11842 Domain of unknown function (DUF3362) 518 628 2.9E-33 T 11-11-2016 IPR024560 Uncharacterised protein family UPF0313, C-terminal Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 SUPERFAMILY SSF102114 395 593 1.1E-12 T 11-11-2016 Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 SUPERFAMILY SSF102114 301 365 1.1E-12 T 11-11-2016 Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 Pfam PF08497 Radical SAM N-terminal 6 302 5.0E-137 T 11-11-2016 IPR013704 Uncharacterised protein family UPF0313, N-terminal Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 6 564 9.4E-273 T 11-11-2016 IPR022946 Uncharacterised protein family UPF0313 Gferi_RS25950 73e82e8eb1ae3ed745b66bf1baafe25b 632 Pfam PF04055 Radical SAM superfamily 304 478 1.4E-14 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 Gene3D G3DSA:3.20.20.70 2 323 1.7E-156 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 SMART SM01004 2 321 3.3E-241 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 Pfam PF00490 Delta-aminolevulinic acid dehydratase 5 320 8.7E-156 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 150 169 1.1E-60 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 265 280 1.1E-60 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 295 314 1.1E-60 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 188 207 1.1E-60 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 120 134 1.1E-60 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 240 256 1.1E-60 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 PIRSF PIRSF001415 1 324 6.0E-156 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 240 252 - T 11-11-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 Gferi_RS24305 e553d79cbb563ca2b3ff454710f2886f 326 SUPERFAMILY SSF51569 3 323 6.89E-148 T 11-11-2016 Gferi_RS23285 314a0a3ec3e4cea5b63d68f6ef976b64 183 Gene3D G3DSA:3.40.630.30 1 179 1.4E-44 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS23285 314a0a3ec3e4cea5b63d68f6ef976b64 183 Pfam PF13302 Acetyltransferase (GNAT) domain 8 150 4.8E-22 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS23285 314a0a3ec3e4cea5b63d68f6ef976b64 183 SUPERFAMILY SSF55729 1 174 2.98E-43 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19270 8b09ccfe0d84b5abb4cff0f05feb3ebf 274 Pfam PF01261 Xylose isomerase-like TIM barrel 31 218 1.8E-18 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS19270 8b09ccfe0d84b5abb4cff0f05feb3ebf 274 SUPERFAMILY SSF51658 5 263 5.89E-31 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS19270 8b09ccfe0d84b5abb4cff0f05feb3ebf 274 Gene3D G3DSA:3.20.20.150 30 256 9.5E-23 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 TIGRFAM TIGR00277 HDIG: HDIG domain 392 482 7.4E-9 T 11-11-2016 IPR006675 HDIG domain Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 SUPERFAMILY SSF55073 198 357 9.42E-47 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 Gene3D G3DSA:1.10.3210.10 383 557 2.3E-25 T 11-11-2016 IPR006674 HD domain Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 192 355 1.9E-53 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 Pfam PF00990 Diguanylate cyclase, GGDEF domain 193 351 1.6E-47 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 Gene3D G3DSA:3.30.70.270 195 359 1.2E-51 T 11-11-2016 Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 SMART SM00471 388 523 4.3E-10 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 SMART SM00267 182 356 2.7E-56 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 SUPERFAMILY SSF109604 379 554 9.42E-40 T 11-11-2016 Gferi_RS05270 430cce09d99a3f0cde752ffc48aa44db 566 Pfam PF01966 HD domain 392 514 3.1E-21 T 11-11-2016 IPR006674 HD domain Gferi_RS22220 e6ced2380992c9333a51da4f0b75e3b5 415 SUPERFAMILY SSF103473 3 410 9.94E-42 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS22220 e6ced2380992c9333a51da4f0b75e3b5 415 Pfam PF07690 Major Facilitator Superfamily 18 379 8.1E-28 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS22220 e6ced2380992c9333a51da4f0b75e3b5 415 Gene3D G3DSA:1.20.1250.20 227 410 1.7E-12 T 11-11-2016 Gferi_RS22220 e6ced2380992c9333a51da4f0b75e3b5 415 Gene3D G3DSA:1.20.1250.20 8 197 1.4E-22 T 11-11-2016 Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 Pfam PF00381 PTS HPr component phosphorylation site 4 85 4.4E-27 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 42 57 - T 11-11-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 PRINTS PR00107 Phosphocarrier protein signature 56 73 2.2E-17 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 PRINTS PR00107 Phosphocarrier protein signature 41 56 2.2E-17 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.2E-17 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 Gene3D G3DSA:3.30.1340.10 1 88 6.5E-29 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 SUPERFAMILY SSF55594 1 88 3.93E-24 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19725 3eca509642308662fa57b201a0120c86 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 85 4.1E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19340 86efefa6e8a494cda51f795825728c21 383 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 181 380 2.0E-9 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS19340 86efefa6e8a494cda51f795825728c21 383 SUPERFAMILY SSF51726 11 144 1.64E-32 T 11-11-2016 Gferi_RS19340 86efefa6e8a494cda51f795825728c21 383 SUPERFAMILY SSF51726 182 382 1.64E-32 T 11-11-2016 Gferi_RS19340 86efefa6e8a494cda51f795825728c21 383 Gene3D G3DSA:3.20.20.210 149 381 1.1E-20 T 11-11-2016 Gferi_RS19340 86efefa6e8a494cda51f795825728c21 383 Gene3D G3DSA:3.20.20.210 4 115 1.1E-20 T 11-11-2016 Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 Pfam PF01012 Electron transfer flavoprotein domain 71 250 2.9E-52 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 Gene3D G3DSA:3.40.50.1220 265 391 2.3E-57 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 SUPERFAMILY SSF52467 272 389 6.27E-49 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 Gene3D G3DSA:3.30.70.20 5 62 4.8E-16 T 11-11-2016 Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 Pfam PF00037 4Fe-4S binding domain 4 26 5.3E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 Pfam PF00037 4Fe-4S binding domain 33 53 8.6E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 272 353 3.3E-37 T 11-11-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 SUPERFAMILY SSF54862 3 58 5.76E-18 T 11-11-2016 Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 SUPERFAMILY SSF52402 69 265 1.95E-62 T 11-11-2016 Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 Gene3D G3DSA:3.40.50.620 69 264 2.1E-83 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 SMART SM00893 71 260 2.3E-62 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS10520 a63fe54eefceebff4df6659a708faa15 408 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 335 361 - T 11-11-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 Gene3D G3DSA:3.30.300.10 11 145 2.2E-47 T 11-11-2016 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 SUPERFAMILY SSF55973 3 109 4.32E-47 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 Gene3D G3DSA:3.30.300.10 146 243 1.3E-49 T 11-11-2016 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 Gene3D G3DSA:3.30.300.10 254 392 2.2E-70 T 11-11-2016 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 269 277 - T 11-11-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 391 4.5E-187 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 SUPERFAMILY SSF55973 243 391 7.85E-70 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 Pfam PF02772 S-adenosylmethionine synthetase, central domain 125 241 4.8E-51 T 11-11-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 SUPERFAMILY SSF55973 120 242 2.2E-54 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 393 59.668 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 243 382 1.9E-70 T 11-11-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 3.0E-43 T 11-11-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 PIRSF PIRSF000497 1 393 2.4E-176 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS10840 03a3ac11cb366c9558190fa3709e5ec7 396 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 126 136 - T 11-11-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 ProSitePatterns PS00106 Galactokinase signature. 26 37 - T 11-11-2016 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 SUPERFAMILY SSF55060 206 385 5.4E-59 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PRINTS PR00959 Mevalonate kinase family signature 24 48 8.0E-43 T 11-11-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PRINTS PR00959 Mevalonate kinase family signature 119 141 8.0E-43 T 11-11-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PRINTS PR00959 Mevalonate kinase family signature 162 181 8.0E-43 T 11-11-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PRINTS PR00959 Mevalonate kinase family signature 332 349 8.0E-43 T 11-11-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 Gene3D G3DSA:3.30.230.10 4 209 2.8E-75 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PRINTS PR00473 Galactokinase signature 26 44 3.4E-28 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PRINTS PR00473 Galactokinase signature 91 102 3.4E-28 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PRINTS PR00473 Galactokinase signature 112 130 3.4E-28 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PRINTS PR00473 Galactokinase signature 269 283 3.4E-28 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 TIGRFAM TIGR00131 gal_kin: galactokinase 5 386 5.5E-134 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 SUPERFAMILY SSF54211 5 202 4.02E-63 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 PIRSF PIRSF000530 2 386 2.7E-127 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 11-11-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 Gene3D G3DSA:3.30.70.890 210 384 1.1E-62 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 Pfam PF08544 GHMP kinases C terminal 284 365 2.8E-12 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 Pfam PF00288 GHMP kinases N terminal domain 115 181 7.7E-15 T 11-11-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 Pfam PF10509 Galactokinase galactose-binding signature 8 57 8.8E-22 T 11-11-2016 IPR019539 Galactokinase galactose-binding domain KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19830 799f5f0b745a323801ab09f9d2d41622 386 Hamap MF_00246 Galactokinase [galK]. 24 385 48.408 T 11-11-2016 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS05180 e81d91147a0610fc4246bc8583da3627 129 SUPERFAMILY SSF55021 63 127 2.32E-18 T 11-11-2016 Gferi_RS05180 e81d91147a0610fc4246bc8583da3627 129 PIRSF PIRSF008459 4 129 8.0E-45 T 11-11-2016 IPR016540 Uncharacterised conserved protein UCP008459 Gferi_RS05180 e81d91147a0610fc4246bc8583da3627 129 SUPERFAMILY SSF55021 5 61 2.52E-15 T 11-11-2016 Gferi_RS05180 e81d91147a0610fc4246bc8583da3627 129 Gene3D G3DSA:3.30.2130.10 6 124 1.7E-21 T 11-11-2016 Gferi_RS05180 e81d91147a0610fc4246bc8583da3627 129 Pfam PF13840 ACT domain 60 121 2.7E-20 T 11-11-2016 IPR027795 GATS-like ACT domain Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 Pfam PF02743 Cache domain 46 278 9.8E-16 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 Gene3D G3DSA:3.30.450.20 189 288 3.3E-8 T 11-11-2016 Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 Pfam PF12833 Helix-turn-helix domain 684 762 1.4E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 SUPERFAMILY SSF46689 714 763 3.05E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 SMART SM00342 678 761 1.3E-22 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 Gene3D G3DSA:1.10.10.60 659 714 1.0E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 715 757 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 SUPERFAMILY SSF46689 661 712 1.61E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22305 b200cb048e70ec1c2ffdada4a669b305 765 Gene3D G3DSA:1.10.10.60 715 763 4.0E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19610 584552157701207307c1eb8da7caaa9d 129 Gene3D G3DSA:1.10.260.40 4 67 1.4E-21 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19610 584552157701207307c1eb8da7caaa9d 129 Pfam PF01381 Helix-turn-helix 8 62 1.3E-16 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS19610 584552157701207307c1eb8da7caaa9d 129 SUPERFAMILY SSF47413 2 70 4.29E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19610 584552157701207307c1eb8da7caaa9d 129 SMART SM00530 7 62 4.3E-16 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS09100 e5104a67ceb2615f38385c217f19fbc2 286 Pfam PF12367 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 199 260 1.2E-19 T 11-11-2016 IPR032686 Pyruvate ferredoxin oxidoreductase beta subunit, C-terminal Gferi_RS09100 e5104a67ceb2615f38385c217f19fbc2 286 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 48 195 1.1E-30 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS09100 e5104a67ceb2615f38385c217f19fbc2 286 SUPERFAMILY SSF52518 12 247 5.08E-75 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS09100 e5104a67ceb2615f38385c217f19fbc2 286 Gene3D G3DSA:3.40.50.970 11 220 1.3E-81 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS09100 e5104a67ceb2615f38385c217f19fbc2 286 TIGRFAM TIGR02177 PorB_KorB: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family 14 257 6.2E-93 T 11-11-2016 IPR011896 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate Gferi_RS01935 a216fd9038fede36b023a9f5eda27a7e 243 Pfam PF05949 Bacterial protein of unknown function (DUF881) 91 237 7.6E-41 T 11-11-2016 IPR010273 Protein of unknown function DUF881 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 319 9.8E-67 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 445 7.6E-33 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 SUPERFAMILY SSF51905 1 313 1.94E-60 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 35 45 - T 11-11-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 133 151 9.2E-38 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 272 9.2E-38 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 9.2E-38 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 9.2E-38 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 284 306 9.2E-38 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 2 455 5.9E-165 T 11-11-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 Gene3D G3DSA:3.50.50.60 137 325 2.0E-51 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 Gene3D G3DSA:3.30.390.30 326 454 9.9E-44 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 SUPERFAMILY SSF55424 335 453 2.06E-38 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 34 49 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 136 145 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 299 306 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 257 271 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 420 440 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 398 413 7.3E-71 T 11-11-2016 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 Gene3D G3DSA:3.50.50.60 1 136 2.4E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06340 ad130ff46be8c90a2c401fcea5efd363 457 PIRSF PIRSF000350 1 454 3.4E-95 T 11-11-2016 Gferi_RS13155 9b7c0fb570bb5a107a996f35dd6cf1ad 185 SUPERFAMILY SSF52141 4 181 8.5E-62 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS13155 9b7c0fb570bb5a107a996f35dd6cf1ad 185 Gene3D G3DSA:3.40.470.10 4 182 2.5E-70 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS13155 9b7c0fb570bb5a107a996f35dd6cf1ad 185 Pfam PF03167 Uracil DNA glycosylase superfamily 28 173 6.9E-45 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS13155 9b7c0fb570bb5a107a996f35dd6cf1ad 185 SMART SM00986 28 174 3.8E-37 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS13155 9b7c0fb570bb5a107a996f35dd6cf1ad 185 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 14 178 8.3E-64 T 11-11-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain Gferi_RS13155 9b7c0fb570bb5a107a996f35dd6cf1ad 185 SMART SM00987 28 174 3.8E-37 T 11-11-2016 Gferi_RS14645 111eb1648b57a1937f88daaa1a3609f4 226 SUPERFAMILY SSF48008 80 213 4.71E-20 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS14645 111eb1648b57a1937f88daaa1a3609f4 226 Gene3D G3DSA:1.10.10.10 11 73 9.8E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14645 111eb1648b57a1937f88daaa1a3609f4 226 SMART SM00345 14 72 1.0E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14645 111eb1648b57a1937f88daaa1a3609f4 226 SUPERFAMILY SSF46785 11 81 3.52E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14645 111eb1648b57a1937f88daaa1a3609f4 226 Gene3D G3DSA:1.20.120.530 76 215 3.6E-22 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS14645 111eb1648b57a1937f88daaa1a3609f4 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 5.4E-18 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14645 111eb1648b57a1937f88daaa1a3609f4 226 SMART SM00895 82 208 6.5E-10 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS14645 111eb1648b57a1937f88daaa1a3609f4 226 Pfam PF07729 FCD domain 82 207 7.7E-19 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS19095 98414783e7dd3eee3dd54c3d20af1ed4 139 SUPERFAMILY SSF53062 3 130 6.8E-31 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS19095 98414783e7dd3eee3dd54c3d20af1ed4 139 Pfam PF03610 PTS system fructose IIA component 5 113 7.8E-22 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS19095 98414783e7dd3eee3dd54c3d20af1ed4 139 Gene3D G3DSA:3.40.50.510 3 134 8.5E-34 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 Gene3D G3DSA:3.30.70.20 56 121 1.1E-13 T 11-11-2016 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 ProSitePatterns PS01087 Radical activating enzymes signature. 22 43 - T 11-11-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 SUPERFAMILY SSF102114 99 267 7.06E-15 T 11-11-2016 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 Gene3D G3DSA:3.80.30.10 129 307 3.8E-57 T 11-11-2016 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 PIRSF PIRSF000371 2 308 1.1E-100 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 11 301 1.9E-108 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 Pfam PF13353 4Fe-4S single cluster domain 21 199 2.7E-11 T 11-11-2016 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 SUPERFAMILY SSF54862 10 148 1.05E-19 T 11-11-2016 Gferi_RS09580 7b5b700315e51aaa1a2a5aef51611f60 308 Pfam PF04055 Radical SAM superfamily 29 241 3.5E-27 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS03425 ee931f321468ca2ba6bb72c87c04cec4 129 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 124 7.3E-36 T 11-11-2016 IPR006056 RidA family Gferi_RS03425 ee931f321468ca2ba6bb72c87c04cec4 129 Pfam PF01042 Endoribonuclease L-PSP 12 124 7.5E-34 T 11-11-2016 IPR006175 YjgF/YER057c/UK114 family Gferi_RS03425 ee931f321468ca2ba6bb72c87c04cec4 129 Gene3D G3DSA:3.30.1330.40 2 126 1.7E-41 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Gferi_RS03425 ee931f321468ca2ba6bb72c87c04cec4 129 SUPERFAMILY SSF55298 1 126 1.57E-40 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Gferi_RS05840 c0c1edd707c4e41eb94db6f9b9ae8922 283 SUPERFAMILY SSF52317 9 223 1.22E-25 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS05840 c0c1edd707c4e41eb94db6f9b9ae8922 283 PIRSF PIRSF032067 3 278 8.2E-68 T 11-11-2016 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 Gferi_RS05840 c0c1edd707c4e41eb94db6f9b9ae8922 283 Pfam PF03575 Peptidase family S51 9 209 3.7E-28 T 11-11-2016 IPR005320 Peptidase S51 GO:0006508|GO:0008236 Gferi_RS05840 c0c1edd707c4e41eb94db6f9b9ae8922 283 Gene3D G3DSA:3.40.50.880 10 225 4.8E-32 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS05840 c0c1edd707c4e41eb94db6f9b9ae8922 283 TIGRFAM TIGR02069 cyanophycinase: cyanophycinase 9 256 5.0E-97 T 11-11-2016 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 11-11-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 Gene3D G3DSA:1.10.10.10 1 52 4.5E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 SUPERFAMILY SSF54909 62 138 2.15E-16 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 SMART SM00344 1 107 9.6E-41 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.2E-16 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.2E-16 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.2E-16 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 SUPERFAMILY SSF46785 1 60 1.38E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 4.6E-17 T 11-11-2016 Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 Pfam PF01037 Lrp/AsnC ligand binding domain 75 134 8.2E-15 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS11845 f38b9e5650cf3473a9d96d62ca7db51b 145 Gene3D G3DSA:3.30.70.920 55 124 1.4E-18 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 448 458 - T 11-11-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF00082 Subtilase family 230 492 8.6E-44 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 296 306 - T 11-11-2016 IPR022398 Peptidase S8, subtilisin, His-active site Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Gene3D G3DSA:3.40.50.200 163 505 1.1E-86 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Gene3D G3DSA:3.40.50.1820 2631 2771 1.8E-4 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 SUPERFAMILY SSF52743 167 504 2.09E-72 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 234 245 - T 11-11-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 2039 2076 1.7E-5 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 1163 1197 6.7E-6 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 2195 2229 3.2E-5 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 1494 1529 1.5E-4 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 1043 1078 6.7E-8 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 1697 1727 1.1E-5 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 1942 1976 1.2E-6 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 2415 2448 3.1E-7 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 1744 1775 3.7E-7 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 1791 1823 2.5E-5 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 Pfam PF05593 RHS Repeat 1921 1957 1.8E-6 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1744 1775 1.5E-7 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2060 2100 2.1E-5 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1649 1683 0.0024 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1836 1873 0.003 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1164 1197 1.1E-4 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1921 1962 1.9E-8 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2215 2246 0.0015 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1043 1081 3.5E-7 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1791 1830 5.8E-7 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1494 1522 9.7E-6 T 11-11-2016 IPR006530 YD repeat Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 PRINTS PR00723 Subtilisin serine protease family (S8) signature 447 463 5.7E-13 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 PRINTS PR00723 Subtilisin serine protease family (S8) signature 229 248 5.7E-13 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 PRINTS PR00723 Subtilisin serine protease family (S8) signature 292 305 5.7E-13 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 SUPERFAMILY SSF53474 2629 2781 2.42E-8 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS10425 0c7b477ad7ad24c1c211a19705849892 2857 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 2437 2517 5.0E-22 T 11-11-2016 IPR022385 Rhs repeat-associated core GO:0097264 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF48452 176 355 1.59E-20 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF48452 706 744 1.59E-20 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF48452 853 888 1.59E-20 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF48452 1386 1443 1.59E-20 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SMART SM00028 1383 1416 13.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SMART SM00028 821 854 4.4 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SMART SM00028 713 746 32.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SMART SM00028 240 273 15.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SMART SM00028 855 888 0.0026 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SMART SM00028 274 307 0.44 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SMART SM00028 1417 1450 190.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SMART SM00028 199 232 170.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF53448 1 92 6.0E-22 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Gene3D G3DSA:1.25.40.10 189 348 1.0E-22 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Gene3D G3DSA:1.25.40.10 668 745 1.0E-22 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Gene3D G3DSA:1.25.40.10 791 881 2.8E-21 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Gene3D G3DSA:1.25.40.10 986 1034 2.8E-21 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Gene3D G3DSA:1.25.40.10 1383 1443 2.8E-21 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Gene3D G3DSA:3.90.550.10 1 126 1.4E-20 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF48452 1001 1053 1.67E-11 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF48452 795 888 1.67E-11 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Pfam PF00535 Glycosyl transferase family 2 4 118 1.1E-18 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Pfam PF13176 Tetratricopeptide repeat 716 748 0.017 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF53756 919 1006 5.65E-24 T 11-11-2016 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 SUPERFAMILY SSF53756 1052 1318 5.65E-24 T 11-11-2016 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1676 1827 6.5E-16 T 11-11-2016 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Pfam PF13181 Tetratricopeptide repeat 856 881 0.002 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10750 76884e9d57fc67f3b7227dc5e5a38111 1860 Pfam PF13181 Tetratricopeptide repeat 275 303 0.035 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS16245 ec1a07f197564e78fd407c4cbbc2f94e 786 Gene3D G3DSA:3.20.70.20 1 784 1.2E-249 T 11-11-2016 Gferi_RS16245 ec1a07f197564e78fd407c4cbbc2f94e 786 Pfam PF01228 Glycine radical 665 767 1.3E-29 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 Gferi_RS16245 ec1a07f197564e78fd407c4cbbc2f94e 786 Pfam PF02901 Pyruvate formate lyase-like 1 648 4.8E-224 T 11-11-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 Gferi_RS16245 ec1a07f197564e78fd407c4cbbc2f94e 786 SUPERFAMILY SSF51998 1 783 1.25E-233 T 11-11-2016 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 Gene3D G3DSA:3.30.565.10 312 460 5.7E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 SUPERFAMILY SSF158472 189 236 1.44E-7 T 11-11-2016 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 SMART SM00387 353 461 1.9E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 SUPERFAMILY SSF55874 297 459 4.71E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 SMART SM00388 241 307 8.2E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 SUPERFAMILY SSF47384 224 308 4.32E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 Pfam PF00672 HAMP domain 170 235 3.8E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 304 8.7E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 460 1.5E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 Gene3D G3DSA:3.30.450.20 41 159 1.4E-6 T 11-11-2016 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 Gene3D G3DSA:1.10.287.130 231 303 1.5E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 SMART SM00304 188 240 4.1E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 2.1E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 2.1E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS00495 0c141b3ede33b9ce74ea8e6cc11f8aa8 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 2.1E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 SUPERFAMILY SSF53822 62 328 6.09E-80 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 Gene3D G3DSA:1.10.260.40 2 53 7.3E-23 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 Gene3D G3DSA:3.40.50.2300 172 308 5.2E-51 T 11-11-2016 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.8E-6 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.8E-6 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.5E-19 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 Pfam PF13377 Periplasmic binding protein-like domain 168 328 7.4E-38 T 11-11-2016 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-11-2016 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 Gene3D G3DSA:3.40.50.2300 54 171 7.6E-40 T 11-11-2016 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 SUPERFAMILY SSF47413 1 59 3.02E-16 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS25245 8a83f9ce4b9f3e55865c04aa815e8414 328 SMART SM00354 1 71 8.0E-31 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS02065 281636a8dc90ee36c3df83fa1868ddfc 331 Pfam PF04471 Restriction endonuclease 121 230 4.6E-9 T 11-11-2016 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 Gferi_RS04905 9b74c1d022035c2f9b9ddbf2fc9dca61 314 SUPERFAMILY SSF102114 6 256 5.1E-26 T 11-11-2016 Gferi_RS04905 9b74c1d022035c2f9b9ddbf2fc9dca61 314 Pfam PF13353 4Fe-4S single cluster domain 9 106 1.5E-5 T 11-11-2016 Gferi_RS04905 9b74c1d022035c2f9b9ddbf2fc9dca61 314 Gene3D G3DSA:3.20.20.70 9 261 5.1E-23 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS04905 9b74c1d022035c2f9b9ddbf2fc9dca61 314 Pfam PF04055 Radical SAM superfamily 12 120 3.2E-11 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS16045 f5722ac1aee02b72268bd56fa48e1121 466 Gene3D G3DSA:3.30.465.10 102 222 8.8E-44 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Gferi_RS16045 f5722ac1aee02b72268bd56fa48e1121 466 SUPERFAMILY SSF56176 4 222 1.36E-67 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Gferi_RS16045 f5722ac1aee02b72268bd56fa48e1121 466 Gene3D G3DSA:1.10.45.10 426 465 4.5E-13 T 11-11-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Gferi_RS16045 f5722ac1aee02b72268bd56fa48e1121 466 Pfam PF01565 FAD binding domain 47 184 3.8E-41 T 11-11-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Gferi_RS16045 f5722ac1aee02b72268bd56fa48e1121 466 Pfam PF02913 FAD linked oxidases, C-terminal domain 222 465 1.5E-63 T 11-11-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Gferi_RS16045 f5722ac1aee02b72268bd56fa48e1121 466 Gene3D G3DSA:3.30.43.10 4 101 2.6E-22 T 11-11-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Gferi_RS16045 f5722ac1aee02b72268bd56fa48e1121 466 SUPERFAMILY SSF55103 197 465 1.34E-55 T 11-11-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Gferi_RS19215 65c5d69cb58108b32f3b7dbbf2abaf09 197 Gene3D G3DSA:3.40.50.1240 2 195 5.1E-52 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS19215 65c5d69cb58108b32f3b7dbbf2abaf09 197 PIRSF PIRSF000709 1 195 8.5E-25 T 11-11-2016 Gferi_RS19215 65c5d69cb58108b32f3b7dbbf2abaf09 197 TIGRFAM TIGR03162 ribazole_cobC: alpha-ribazole phosphatase 5 181 3.7E-50 T 11-11-2016 IPR017578 Alpha-ribazole phosphatase, CobC GO:0009236|GO:0043755 KEGG: 00860+3.1.3.73|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS19215 65c5d69cb58108b32f3b7dbbf2abaf09 197 SMART SM00855 4 157 1.6E-15 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 Gferi_RS19215 65c5d69cb58108b32f3b7dbbf2abaf09 197 SUPERFAMILY SSF53254 1 196 7.07E-54 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS19215 65c5d69cb58108b32f3b7dbbf2abaf09 197 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 195 3.9E-50 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 Pfam PF04898 Glutamate synthase central domain 470 756 8.9E-112 T 11-11-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 SUPERFAMILY SSF69336 1235 1494 5.75E-89 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 SUPERFAMILY SSF51395 456 1220 2.97E-251 T 11-11-2016 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 Pfam PF01645 Conserved region in glutamate synthase 818 1185 1.3E-145 T 11-11-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 Gene3D G3DSA:3.20.20.70 455 805 1.4E-103 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 Pfam PF01493 GXGXG motif 1264 1449 2.0E-78 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 Gene3D G3DSA:2.160.20.60 1238 1498 7.9E-95 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 Pfam PF00310 Glutamine amidotransferases class-II 22 442 1.8E-177 T 11-11-2016 IPR017932 Glutamine amidotransferase type 2 domain Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 Gene3D G3DSA:3.60.20.10 22 453 2.0E-179 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 Gene3D G3DSA:3.20.20.70 852 1217 3.2E-166 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS09015 e1aa60a8f5dccf97715e635a957d2332 1505 SUPERFAMILY SSF56235 22 446 5.98E-151 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 Gene3D G3DSA:2.60.420.10 675 744 3.3E-19 T 11-11-2016 Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 Gene3D G3DSA:1.50.10.10 307 674 4.6E-131 T 11-11-2016 IPR012341 Six-hairpin glycosidase GO:0003824 Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 312 687 2.1E-116 T 11-11-2016 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 SUPERFAMILY SSF74650 2 258 1.19E-51 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 9 257 5.7E-49 T 11-11-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 SUPERFAMILY SSF48208 266 740 7.14E-112 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 PIRSF PIRSF036289 1 751 5.1E-209 T 11-11-2016 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 Pfam PF03633 Glycosyl hydrolase family 65, C-terminal domain 693 742 1.7E-13 T 11-11-2016 IPR005194 Glycoside hydrolase family 65, C-terminal Gferi_RS06785 23ed5f9f1c817dc7004234a992d6d5ae 762 Gene3D G3DSA:2.70.98.40 2 258 1.6E-58 T 11-11-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Gferi_RS19950 eb878b4a86d6b012f7bb02dbfc3b0352 214 Gene3D G3DSA:3.40.50.280 76 212 5.6E-44 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19950 eb878b4a86d6b012f7bb02dbfc3b0352 214 SUPERFAMILY SSF47644 3 81 1.96E-20 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19950 eb878b4a86d6b012f7bb02dbfc3b0352 214 SMART SM01018 2 85 9.9E-25 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19950 eb878b4a86d6b012f7bb02dbfc3b0352 214 Pfam PF02310 B12 binding domain 94 206 1.6E-22 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19950 eb878b4a86d6b012f7bb02dbfc3b0352 214 Pfam PF02607 B12 binding domain 6 78 2.5E-19 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19950 eb878b4a86d6b012f7bb02dbfc3b0352 214 Gene3D G3DSA:1.10.1240.10 3 75 2.0E-18 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19950 eb878b4a86d6b012f7bb02dbfc3b0352 214 SUPERFAMILY SSF52242 70 212 1.27E-38 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS07665 7b0eaa84014a1fd75b043d88ef0c5abf 167 SMART SM00257 122 167 2.3E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS07665 7b0eaa84014a1fd75b043d88ef0c5abf 167 Gene3D G3DSA:2.40.440.10 6 114 7.0E-37 T 11-11-2016 Gferi_RS07665 7b0eaa84014a1fd75b043d88ef0c5abf 167 SUPERFAMILY SSF141523 2 114 8.11E-36 T 11-11-2016 Gferi_RS07665 7b0eaa84014a1fd75b043d88ef0c5abf 167 Pfam PF01476 LysM domain 123 167 1.2E-13 T 11-11-2016 IPR018392 LysM domain Gferi_RS07665 7b0eaa84014a1fd75b043d88ef0c5abf 167 SUPERFAMILY SSF54106 121 167 1.96E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS07665 7b0eaa84014a1fd75b043d88ef0c5abf 167 Gene3D G3DSA:3.10.350.10 121 167 1.6E-16 T 11-11-2016 IPR018392 LysM domain Gferi_RS07665 7b0eaa84014a1fd75b043d88ef0c5abf 167 Pfam PF03734 L,D-transpeptidase catalytic domain 8 113 9.5E-20 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 11-11-2016 IPR019844 Cold-shock conserved site Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 SMART SM00357 3 66 3.4E-28 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 Gene3D G3DSA:2.40.50.140 1 64 1.0E-30 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 PIRSF PIRSF002599 1 66 3.6E-24 T 11-11-2016 IPR012156 Cold shock, CspA GO:0003676 Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 6.1E-29 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 SUPERFAMILY SSF50249 1 65 3.09E-24 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 PRINTS PR00050 Cold shock protein signature 39 57 1.4E-18 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 PRINTS PR00050 Cold shock protein signature 4 19 1.4E-18 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS23165 62c1b381564a0ad361fb6241cb6ca2fc 66 PRINTS PR00050 Cold shock protein signature 24 33 1.4E-18 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Gferi_RS00390 4edc88254c65343e4fc72c955d66a4c2 394 Pfam PF00395 S-layer homology domain 233 274 8.5E-7 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS00390 4edc88254c65343e4fc72c955d66a4c2 394 Pfam PF00395 S-layer homology domain 320 341 4.7E-4 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 SUPERFAMILY SSF46785 3 73 9.54E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 SMART SM00895 94 214 1.8E-17 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 Gene3D G3DSA:1.20.120.530 92 221 5.1E-24 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 Gene3D G3DSA:1.10.10.10 2 72 8.2E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 69 6.7E-20 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 SMART SM00345 10 69 1.3E-20 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 Pfam PF07729 FCD domain 94 212 1.1E-20 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 SUPERFAMILY SSF48008 93 220 8.11E-24 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 1.0E-8 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22085 6e23e0c380a3fc92d44d58b4cfc644fc 225 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 1.0E-8 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 Gene3D G3DSA:3.40.50.300 14 129 4.4E-151 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 Gene3D G3DSA:3.40.50.300 249 443 4.4E-151 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 SUPERFAMILY SSF52540 5 556 1.23E-248 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 Gene3D G3DSA:3.30.1510.10 130 248 1.8E-55 T 11-11-2016 Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 Gene3D G3DSA:3.10.410.10 445 534 6.8E-41 T 11-11-2016 Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 104 114 - T 11-11-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 2 558 49.376 T 11-11-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 329 340 - T 11-11-2016 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Gferi_RS06365 a0b14e219eb4c5700529f78ebb729883 558 Pfam PF01268 Formate--tetrahydrofolate ligase 3 558 6.0E-272 T 11-11-2016 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524|GO:0009396 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 Gene3D G3DSA:2.40.50.140 1 78 3.1E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 88 451 2.3E-29 T 11-11-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 SUPERFAMILY SSF53335 67 451 8.01E-82 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 434 444 - T 11-11-2016 IPR030391 RNA methyltransferase TrmA, conserved site Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 Gene3D G3DSA:3.40.50.150 255 451 1.1E-68 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 Pfam PF01938 TRAM domain 5 58 3.0E-9 T 11-11-2016 IPR002792 TRAM domain Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 18 444 4.7E-108 T 11-11-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 382 413 - T 11-11-2016 IPR030390 RNA methyltransferase TrmA, active site Gferi_RS23455 3d36738ead70a92f92419e3992304081 458 SUPERFAMILY SSF50249 2 59 1.88E-12 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Pfam PF00140 Sigma-70 factor, region 1.2 101 134 1.8E-19 T 11-11-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 135 360 1.2E-38 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 332 358 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Gene3D G3DSA:1.10.601.10 8 208 1.4E-75 T 11-11-2016 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 SUPERFAMILY SSF88659 269 371 2.8E-31 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 PRINTS PR00046 Major sigma-70 factor signature 187 195 5.2E-32 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 PRINTS PR00046 Major sigma-70 factor signature 332 347 5.2E-32 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 PRINTS PR00046 Major sigma-70 factor signature 163 176 5.2E-32 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 PRINTS PR00046 Major sigma-70 factor signature 311 323 5.2E-32 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 PRINTS PR00046 Major sigma-70 factor signature 347 358 5.2E-32 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Gene3D G3DSA:1.10.10.10 212 263 2.2E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Pfam PF04542 Sigma-70 region 2 140 208 3.7E-22 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Pfam PF04545 Sigma-70, region 4 307 360 1.1E-20 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Pfam PF03979 Sigma-70 factor, region 1.1 8 80 6.6E-18 T 11-11-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 SUPERFAMILY SSF88659 212 286 1.57E-23 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 SUPERFAMILY SSF88946 100 209 3.79E-54 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Gene3D G3DSA:1.10.10.10 302 372 6.5E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 135 372 1.2E-123 T 11-11-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Pfam PF04539 Sigma-70 region 3 218 294 5.7E-32 T 11-11-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 8 372 34.821 T 11-11-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 Gferi_RS02185 6053e3d35039f7c1607b795ab63c3fbb 372 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 163 176 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS09575 f9574c14a58412ea8d6430ff3d9e4d6e 796 ProSitePatterns PS00850 Glycine radical domain signature. 767 775 - T 11-11-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Gferi_RS09575 f9574c14a58412ea8d6430ff3d9e4d6e 796 Pfam PF02901 Pyruvate formate lyase-like 1 656 1.3E-172 T 11-11-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 Gferi_RS09575 f9574c14a58412ea8d6430ff3d9e4d6e 796 Gene3D G3DSA:3.20.70.20 1 795 9.9E-226 T 11-11-2016 Gferi_RS09575 f9574c14a58412ea8d6430ff3d9e4d6e 796 Pfam PF01228 Glycine radical 678 778 5.7E-25 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 Gferi_RS09575 f9574c14a58412ea8d6430ff3d9e4d6e 796 SUPERFAMILY SSF51998 1 796 5.8E-186 T 11-11-2016 Gferi_RS10740 a9d0d071c61ef730f253a67fa0a270fe 378 Gene3D G3DSA:3.40.640.10 1 248 4.7E-72 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS10740 a9d0d071c61ef730f253a67fa0a270fe 378 SUPERFAMILY SSF53383 2 375 1.38E-106 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS10740 a9d0d071c61ef730f253a67fa0a270fe 378 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 373 1.2E-155 T 11-11-2016 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 Gferi_RS10740 a9d0d071c61ef730f253a67fa0a270fe 378 Gene3D G3DSA:3.90.1150.10 250 376 1.9E-32 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS10740 a9d0d071c61ef730f253a67fa0a270fe 378 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 371 8.4E-97 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Gferi_RS10740 a9d0d071c61ef730f253a67fa0a270fe 378 PIRSF PIRSF000390 1 377 3.8E-108 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.7E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.7E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.7E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.7E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.7E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.7E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.7E-14 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 5.7E-14 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 5.7E-14 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 Gene3D G3DSA:3.40.50.720 6 252 2.6E-81 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 250 2.3E-57 T 11-11-2016 Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 3.1E-129 T 11-11-2016 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.12+1.1.1.127|MetaCyc: PWY-5515|MetaCyc: PWY-6507|MetaCyc: PWY-7562 Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 SUPERFAMILY SSF51735 9 252 2.3E-75 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS14655 b392bff500af394918c73dd7700e1c21 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS20295 e30de13d925bd9879cc787097290a2bf 1114 Pfam PF13416 Bacterial extracellular solute-binding protein 745 1022 3.7E-21 T 11-11-2016 Gferi_RS20295 e30de13d925bd9879cc787097290a2bf 1114 SUPERFAMILY SSF53850 684 1108 1.73E-42 T 11-11-2016 Gferi_RS20295 e30de13d925bd9879cc787097290a2bf 1114 SUPERFAMILY SSF101898 410 657 2.09E-13 T 11-11-2016 Gferi_RS20295 e30de13d925bd9879cc787097290a2bf 1114 Gene3D G3DSA:3.30.2010.10 233 270 9.3E-5 T 11-11-2016 Gferi_RS20295 e30de13d925bd9879cc787097290a2bf 1114 Pfam PF05569 BlaR1 peptidase M56 9 352 9.2E-63 T 11-11-2016 IPR008756 Peptidase M56 Gferi_RS20295 e30de13d925bd9879cc787097290a2bf 1114 Gene3D G3DSA:3.40.190.10 684 855 3.6E-27 T 11-11-2016 Gferi_RS20295 e30de13d925bd9879cc787097290a2bf 1114 Gene3D G3DSA:2.120.10.30 415 621 4.8E-12 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS20295 e30de13d925bd9879cc787097290a2bf 1114 Gene3D G3DSA:3.40.190.10 856 1018 3.0E-19 T 11-11-2016 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 Pfam PF00512 His Kinase A (phospho-acceptor) domain 373 436 1.3E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 SUPERFAMILY SSF55785 261 366 1.37E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 Pfam PF00672 HAMP domain 171 238 1.8E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 SUPERFAMILY SSF47384 365 437 1.96E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 Gene3D G3DSA:3.30.450.20 252 366 4.6E-11 T 11-11-2016 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 Pfam PF13426 PAS domain 260 356 6.3E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 SMART SM00091 249 312 4.9E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 589 4.2E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 SUPERFAMILY SSF55874 430 588 2.89E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 SMART SM00387 482 592 1.3E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 253 363 7.2E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 Gene3D G3DSA:1.10.287.130 370 436 5.4E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 537 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 551 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 570 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 589 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 SUPERFAMILY SSF158472 192 239 3.53E-11 T 11-11-2016 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 SMART SM00304 190 242 3.6E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 SMART SM00388 372 440 1.1E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13510 3de3cc26b26284ff8541820bdf6af070 594 Gene3D G3DSA:3.30.565.10 443 588 1.9E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 Pfam PF13180 PDZ domain 267 358 1.7E-18 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 Gene3D G3DSA:2.40.10.10 157 268 1.9E-41 T 11-11-2016 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 Pfam PF13365 Trypsin-like peptidase domain 90 230 6.7E-34 T 11-11-2016 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 PRINTS PR00834 HtrA/DegQ protease family signature 201 218 2.8E-37 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 PRINTS PR00834 HtrA/DegQ protease family signature 162 186 2.8E-37 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 PRINTS PR00834 HtrA/DegQ protease family signature 223 240 2.8E-37 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 PRINTS PR00834 HtrA/DegQ protease family signature 99 111 2.8E-37 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 PRINTS PR00834 HtrA/DegQ protease family signature 122 142 2.8E-37 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 PRINTS PR00834 HtrA/DegQ protease family signature 307 319 2.8E-37 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 SUPERFAMILY SSF50494 56 261 1.01E-58 T 11-11-2016 IPR009003 Peptidase S1, PA clan Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 Gene3D G3DSA:2.30.42.10 269 363 2.3E-24 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 SUPERFAMILY SSF50156 247 356 6.31E-23 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 Gene3D G3DSA:2.40.10.10 54 156 1.9E-28 T 11-11-2016 Gferi_RS13800 38dca7d9348a53dff6905c5a60e7cb8e 365 SMART SM00228 269 349 1.1E-10 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS03955 8502a33e5efbf957855ed3ba090ef80d 233 Pfam PF01177 Asp/Glu/Hydantoin racemase 9 226 3.1E-52 T 11-11-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS03955 8502a33e5efbf957855ed3ba090ef80d 233 TIGRFAM TIGR00035 asp_race: aspartate racemase 3 229 3.9E-55 T 11-11-2016 IPR004380 Aspartate racemase GO:0006520|GO:0016855 Gferi_RS03955 8502a33e5efbf957855ed3ba090ef80d 233 Gene3D G3DSA:3.40.50.1860 118 219 7.7E-25 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS03955 8502a33e5efbf957855ed3ba090ef80d 233 SUPERFAMILY SSF53681 4 114 9.48E-29 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS03955 8502a33e5efbf957855ed3ba090ef80d 233 SUPERFAMILY SSF53681 121 229 3.6E-21 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS03955 8502a33e5efbf957855ed3ba090ef80d 233 Gene3D G3DSA:3.40.50.1860 4 117 4.5E-34 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SMART SM00086 235 275 61.0 T 11-11-2016 IPR001610 PAC motif Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SMART SM00086 362 404 5.7E-9 T 11-11-2016 IPR001610 PAC motif Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Gene3D G3DSA:3.30.70.270 416 560 5.5E-36 T 11-11-2016 Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SUPERFAMILY SSF55785 244 284 2.69E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Pfam PF00990 Diguanylate cyclase, GGDEF domain 416 560 1.1E-33 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SMART SM00091 287 355 6.0E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SMART SM00091 42 108 0.062 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SMART SM00471 581 716 1.3E-6 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Gene3D G3DSA:3.30.450.20 151 262 5.0E-7 T 11-11-2016 Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SUPERFAMILY SSF109604 560 746 2.22E-35 T 11-11-2016 Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Gene3D G3DSA:3.30.450.20 37 150 7.7E-14 T 11-11-2016 Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SUPERFAMILY SSF55785 296 407 5.09E-24 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Pfam PF13426 PAS domain 61 151 2.7E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Pfam PF13426 PAS domain 198 274 1.7E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Pfam PF13487 HD domain 637 698 1.4E-19 T 11-11-2016 Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 47 159 4.0E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 283 410 2.9E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SUPERFAMILY SSF55785 150 273 6.42E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 414 560 6.3E-35 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SMART SM00267 404 571 1.5E-40 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Gene3D G3DSA:1.10.3210.10 571 747 7.4E-21 T 11-11-2016 IPR006674 HD domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SUPERFAMILY SSF55785 53 160 1.18E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Gene3D G3DSA:3.30.450.20 263 412 3.1E-39 T 11-11-2016 Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 Pfam PF08447 PAS fold 311 397 6.2E-23 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 Gferi_RS00385 931aa8c420ebf18531d55c87c8103824 748 SUPERFAMILY SSF55073 420 560 2.98E-32 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS05550 f69ebf9faca9abf61b34402839bed502 303 Pfam PF04055 Radical SAM superfamily 78 208 5.3E-8 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS05550 f69ebf9faca9abf61b34402839bed502 303 SUPERFAMILY SSF102114 81 290 1.31E-11 T 11-11-2016 Gferi_RS05550 f69ebf9faca9abf61b34402839bed502 303 PIRSF PIRSF004869 2 302 1.9E-80 T 11-11-2016 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted Gferi_RS05550 f69ebf9faca9abf61b34402839bed502 303 Gene3D G3DSA:3.20.20.70 81 293 8.1E-14 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS03535 298e980fdd567fb36588b4ca9e87c2f3 187 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 52 74 - T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Gferi_RS03535 298e980fdd567fb36588b4ca9e87c2f3 187 Pfam PF01066 CDP-alcohol phosphatidyltransferase 10 74 2.7E-17 T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Gferi_RS03535 298e980fdd567fb36588b4ca9e87c2f3 187 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 10 179 1.2E-32 T 11-11-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 Gferi_RS03535 298e980fdd567fb36588b4ca9e87c2f3 187 PIRSF PIRSF000847 6 186 4.4E-41 T 11-11-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 Gferi_RS03285 fd57656986bb2671b52cc325ed7483a0 70 Gene3D G3DSA:1.10.260.40 10 38 8.9E-7 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS03285 fd57656986bb2671b52cc325ed7483a0 70 Pfam PF13413 Helix-turn-helix domain 13 51 9.9E-6 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS03285 fd57656986bb2671b52cc325ed7483a0 70 SUPERFAMILY SSF47413 9 40 4.44E-6 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 PRINTS PR00207 Flagellin signature 74 93 2.4E-8 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 PRINTS PR00207 Flagellin signature 109 132 2.4E-8 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 PRINTS PR00207 Flagellin signature 35 52 2.4E-8 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 Gene3D G3DSA:1.20.1330.10 459 511 2.1E-33 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 Gene3D G3DSA:1.20.1330.10 54 170 2.1E-33 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 Pfam PF00700 Bacterial flagellin C-terminal helical region 472 554 7.1E-8 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 140 7.8E-28 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 554 1.8E-78 T 11-11-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 SUPERFAMILY SSF64518 1 168 1.96E-70 T 11-11-2016 Gferi_RS10775 642752c696430a6171c1cf7f67e6f0ed 555 SUPERFAMILY SSF64518 196 555 1.96E-70 T 11-11-2016 Gferi_RS03540 be68c047a601a420a32aacdc934aab90 235 Gene3D G3DSA:3.10.129.10 153 219 3.7E-12 T 11-11-2016 IPR029069 HotDog domain Gferi_RS03540 be68c047a601a420a32aacdc934aab90 235 SUPERFAMILY SSF54637 156 233 2.16E-13 T 11-11-2016 IPR029069 HotDog domain Gferi_RS03540 be68c047a601a420a32aacdc934aab90 235 Gene3D G3DSA:3.10.129.10 7 141 6.7E-11 T 11-11-2016 IPR029069 HotDog domain Gferi_RS03540 be68c047a601a420a32aacdc934aab90 235 Pfam PF01643 Acyl-ACP thioesterase 11 205 2.6E-24 T 11-11-2016 IPR002864 Acyl-ACP thioesterase GO:0006633|GO:0016790 Gferi_RS03540 be68c047a601a420a32aacdc934aab90 235 SUPERFAMILY SSF54637 1 138 6.27E-22 T 11-11-2016 IPR029069 HotDog domain Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 SUPERFAMILY SSF55785 54 155 1.33E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 55 169 2.4E-15 T 11-11-2016 IPR000014 PAS domain Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 410 419 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 SMART SM00091 53 121 9.0E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 SUPERFAMILY SSF46689 410 505 1.93E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 Gene3D G3DSA:1.10.8.60 371 442 8.3E-24 T 11-11-2016 Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 Pfam PF00158 Sigma-54 interaction domain 199 364 1.9E-69 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 Gene3D G3DSA:1.10.10.60 455 505 2.7E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 Pfam PF00989 PAS fold 54 160 5.2E-9 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 284 299 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 SUPERFAMILY SSF52540 199 439 4.24E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 Gene3D G3DSA:3.30.450.20 56 176 4.3E-16 T 11-11-2016 Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 221 234 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 Gene3D G3DSA:3.40.50.300 195 370 7.7E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09735 b1e56a06184f6e81d39863af3a139b76 510 SMART SM00382 217 361 1.1E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05415 90ec2df9f4afdfe18ff0d910107291b1 227 SUPERFAMILY SSF48452 145 208 1.17E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS05415 90ec2df9f4afdfe18ff0d910107291b1 227 SMART SM00448 3 114 1.6E-37 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05415 90ec2df9f4afdfe18ff0d910107291b1 227 Pfam PF00072 Response regulator receiver domain 5 114 3.2E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05415 90ec2df9f4afdfe18ff0d910107291b1 227 Gene3D G3DSA:3.40.50.2300 2 128 5.2E-41 T 11-11-2016 Gferi_RS05415 90ec2df9f4afdfe18ff0d910107291b1 227 SUPERFAMILY SSF52172 3 127 1.71E-40 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS05415 90ec2df9f4afdfe18ff0d910107291b1 227 Gene3D G3DSA:1.25.40.10 144 206 6.5E-9 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS09565 2cc722be0d54c396c15f828e359e0ba1 796 ProSitePatterns PS00850 Glycine radical domain signature. 766 774 - T 11-11-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Gferi_RS09565 2cc722be0d54c396c15f828e359e0ba1 796 Gene3D G3DSA:3.20.70.20 1 793 9.4E-209 T 11-11-2016 Gferi_RS09565 2cc722be0d54c396c15f828e359e0ba1 796 Pfam PF01228 Glycine radical 678 777 1.4E-27 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 Gferi_RS09565 2cc722be0d54c396c15f828e359e0ba1 796 SUPERFAMILY SSF51998 1 793 1.53E-169 T 11-11-2016 Gferi_RS09565 2cc722be0d54c396c15f828e359e0ba1 796 Pfam PF02901 Pyruvate formate lyase-like 1 655 2.1E-150 T 11-11-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 Gferi_RS15400 b6be347ba260aadc2136a1b1a92533cd 129 SUPERFAMILY SSF46785 4 126 7.62E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15400 b6be347ba260aadc2136a1b1a92533cd 129 Pfam PF01475 Ferric uptake regulator family 9 91 2.6E-5 T 11-11-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Gferi_RS15400 b6be347ba260aadc2136a1b1a92533cd 129 Gene3D G3DSA:1.10.10.10 2 77 4.0E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 Pfam PF01479 S4 domain 99 145 8.6E-23 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 SUPERFAMILY SSF55174 2 206 1.96E-72 T 11-11-2016 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 Gene3D G3DSA:3.10.290.10 101 197 1.1E-31 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 SMART SM00363 98 168 3.7E-21 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 Gene3D G3DSA:1.10.1050.10 1 100 5.0E-43 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 SMART SM01390 3 97 1.7E-53 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 11-11-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 1.1E-27 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.356 T 11-11-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS17535 2a27b01b783d5ed081d82240c6dc36f1 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 8.1E-75 T 11-11-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS05570 8ad8aaf0eef58b9bd98ea2b615b86bf8 330 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 5.2E-67 T 11-11-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Gferi_RS05570 8ad8aaf0eef58b9bd98ea2b615b86bf8 330 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 329 9.6E-142 T 11-11-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Gferi_RS05570 8ad8aaf0eef58b9bd98ea2b615b86bf8 330 Gene3D G3DSA:1.10.1040.10 38 326 6.9E-114 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS05570 8ad8aaf0eef58b9bd98ea2b615b86bf8 330 SUPERFAMILY SSF48179 184 328 7.48E-69 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS05570 8ad8aaf0eef58b9bd98ea2b615b86bf8 330 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 15 178 6.6E-77 T 11-11-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Gferi_RS05570 8ad8aaf0eef58b9bd98ea2b615b86bf8 330 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 2 329 44.923 T 11-11-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 Gferi_RS05570 8ad8aaf0eef58b9bd98ea2b615b86bf8 330 Gene3D G3DSA:3.50.50.60 6 37 5.5E-5 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05570 8ad8aaf0eef58b9bd98ea2b615b86bf8 330 SUPERFAMILY SSF51735 3 183 1.65E-74 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00030 75e6f3af630788c80c40c69806d3e637 212 Pfam PF02224 Cytidylate kinase 3 212 5.8E-73 T 11-11-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 Gferi_RS00030 75e6f3af630788c80c40c69806d3e637 212 SUPERFAMILY SSF52540 1 212 6.06E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00030 75e6f3af630788c80c40c69806d3e637 212 TIGRFAM TIGR00017 cmk: cytidylate kinase 1 210 1.6E-71 T 11-11-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 Gferi_RS00030 75e6f3af630788c80c40c69806d3e637 212 Hamap MF_00238 Cytidylate kinase [cmk]. 1 212 31.651 T 11-11-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 Gferi_RS00030 75e6f3af630788c80c40c69806d3e637 212 Gene3D G3DSA:3.40.50.300 1 211 3.7E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.9E-21 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 SUPERFAMILY SSF53850 89 299 7.06E-40 T 11-11-2016 Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 Pfam PF03466 LysR substrate binding domain 88 295 7.9E-42 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 Gene3D G3DSA:3.40.190.10 90 174 5.8E-17 T 11-11-2016 Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 Gene3D G3DSA:1.10.10.10 1 84 1.3E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 SUPERFAMILY SSF46785 1 87 3.63E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 Gene3D G3DSA:3.40.190.10 175 264 1.8E-17 T 11-11-2016 Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.0E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.0E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS25990 ceaed0f933d810aff9a5b8fd244fb865 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.0E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 Pfam PF00672 HAMP domain 297 363 1.1E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 462 655 2.7E-45 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 SUPERFAMILY SSF103190 181 292 9.02E-14 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 SUPERFAMILY SSF58104 336 370 1.06E-69 T 11-11-2016 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 SUPERFAMILY SSF58104 403 672 1.06E-69 T 11-11-2016 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 Gene3D G3DSA:1.10.287.950 602 663 3.5E-4 T 11-11-2016 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 Gene3D G3DSA:1.10.287.950 412 601 4.7E-49 T 11-11-2016 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 Gene3D G3DSA:3.30.450.20 182 292 2.4E-12 T 11-11-2016 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 Pfam PF17203 Single cache domain 3 203 293 3.8E-8 T 11-11-2016 IPR033463 Single cache domain 3 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 SMART SM00304 316 368 9.2E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS10095 b75b50a6b72a6d567dca2bc6bc46839f 673 SMART SM00283 397 672 1.6E-64 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS08335 1b9155a324d74930a9c331c742995d61 388 Gene3D G3DSA:3.40.50.1970 4 184 7.9E-45 T 11-11-2016 Gferi_RS08335 1b9155a324d74930a9c331c742995d61 388 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 376 9.3E-100 T 11-11-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Gferi_RS08335 1b9155a324d74930a9c331c742995d61 388 Gene3D G3DSA:1.20.1090.10 185 384 3.8E-57 T 11-11-2016 Gferi_RS08335 1b9155a324d74930a9c331c742995d61 388 SUPERFAMILY SSF56796 6 386 5.1E-104 T 11-11-2016 Gferi_RS08335 1b9155a324d74930a9c331c742995d61 388 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 11-11-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Gferi_RS19980 c315b0a7599cd38445340436514e5272 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.1E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS19980 c315b0a7599cd38445340436514e5272 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.1E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS19980 c315b0a7599cd38445340436514e5272 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 58 1.3E-13 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS19980 c315b0a7599cd38445340436514e5272 197 Gene3D G3DSA:1.10.357.10 2 194 3.8E-26 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS19980 c315b0a7599cd38445340436514e5272 197 SUPERFAMILY SSF46689 3 75 9.98E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS13440 aab3e65ee10a7584045f04ff8a4c7383 333 PIRSF PIRSF017082 1 319 8.4E-60 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS13440 aab3e65ee10a7584045f04ff8a4c7383 333 SUPERFAMILY SSF53850 109 287 2.99E-6 T 11-11-2016 Gferi_RS13440 aab3e65ee10a7584045f04ff8a4c7383 333 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 304 2.7E-41 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS17565 c199ad7711173742775979d4710cc500 244 Gene3D G3DSA:3.30.70.660 107 242 7.0E-46 T 11-11-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS17565 c199ad7711173742775979d4710cc500 244 SUPERFAMILY SSF55120 1 244 6.47E-87 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS17565 c199ad7711173742775979d4710cc500 244 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 239 3.3E-67 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS17565 c199ad7711173742775979d4710cc500 244 Gene3D G3DSA:3.30.70.580 1 105 1.9E-40 T 11-11-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS17565 c199ad7711173742775979d4710cc500 244 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 244 37.352 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS17565 c199ad7711173742775979d4710cc500 244 Pfam PF01416 tRNA pseudouridine synthase 8 104 1.2E-13 T 11-11-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS17565 c199ad7711173742775979d4710cc500 244 Pfam PF01416 tRNA pseudouridine synthase 143 244 6.1E-26 T 11-11-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS17565 c199ad7711173742775979d4710cc500 244 PIRSF PIRSF001430 1 244 3.1E-82 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 SUPERFAMILY SSF50022 390 509 1.1E-24 T 11-11-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 PRINTS PR00162 Rieske 2Fe-2S subunit signature 494 506 8.0E-8 T 11-11-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 PRINTS PR00162 Rieske 2Fe-2S subunit signature 482 494 8.0E-8 T 11-11-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 PRINTS PR00162 Rieske 2Fe-2S subunit signature 461 472 8.0E-8 T 11-11-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 Pfam PF00355 Rieske [2Fe-2S] domain 436 509 2.3E-13 T 11-11-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 SUPERFAMILY SSF51971 328 390 4.47E-31 T 11-11-2016 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 SUPERFAMILY SSF51971 35 267 4.47E-31 T 11-11-2016 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 Gene3D G3DSA:2.102.10.10 412 509 1.3E-32 T 11-11-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 Pfam PF01266 FAD dependent oxidoreductase 38 381 4.6E-39 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 Gene3D G3DSA:3.50.50.60 175 252 7.7E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 Gene3D G3DSA:3.50.50.60 24 127 7.7E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS12375 c4d43270d10a6277f4c2aa113eaa1c27 511 Gene3D G3DSA:3.50.50.60 343 402 7.7E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 SMART SM01209 101 293 1.2E-124 T 11-11-2016 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 1.5E-80 T 11-11-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 SUPERFAMILY SSF52440 1 101 8.78E-35 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 419 42.203 T 11-11-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 Gene3D G3DSA:3.30.1490.20 119 188 6.0E-28 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 SMART SM01210 327 418 1.8E-47 T 11-11-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 287 294 - T 11-11-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 SUPERFAMILY SSF51246 328 417 5.23E-30 T 11-11-2016 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 328 416 3.6E-33 T 11-11-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 Gene3D G3DSA:3.90.600.10 328 416 6.9E-36 T 11-11-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 100 2.3E-36 T 11-11-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 416 2.1E-171 T 11-11-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 Gene3D G3DSA:3.30.470.20 189 325 2.9E-59 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 Gene3D G3DSA:3.40.50.20 2 93 1.6E-38 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS09990 f83746db6c560eebef3451c78a4f3f78 419 SUPERFAMILY SSF56059 102 322 2.86E-61 T 11-11-2016 Gferi_RS25030 4235f20b4b53ef15bdc447e01ad73c49 285 SUPERFAMILY SSF51569 4 283 7.62E-111 T 11-11-2016 Gferi_RS25030 4235f20b4b53ef15bdc447e01ad73c49 285 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 2 283 1.2E-119 T 11-11-2016 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 Gferi_RS25030 4235f20b4b53ef15bdc447e01ad73c49 285 PIRSF PIRSF001359 1 283 1.4E-117 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS25030 4235f20b4b53ef15bdc447e01ad73c49 285 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 282 2.2E-111 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS25030 4235f20b4b53ef15bdc447e01ad73c49 285 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 130 141 - T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS25030 4235f20b4b53ef15bdc447e01ad73c49 285 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 282 9.7E-109 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS25030 4235f20b4b53ef15bdc447e01ad73c49 285 Gene3D G3DSA:3.20.20.70 1 284 8.9E-122 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS20045 47f2e05698030acc24bca798a625cb0a 535 Gene3D G3DSA:3.90.76.10 50 196 2.9E-32 T 11-11-2016 Gferi_RS20045 47f2e05698030acc24bca798a625cb0a 535 TIGRFAM TIGR02294 nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein 37 531 6.5E-186 T 11-11-2016 IPR011980 Periplasmic nickel-binding protein GO:0015675|GO:0016151|GO:0020037 Gferi_RS20045 47f2e05698030acc24bca798a625cb0a 535 SUPERFAMILY SSF53850 42 527 2.9E-114 T 11-11-2016 Gferi_RS20045 47f2e05698030acc24bca798a625cb0a 535 Gene3D G3DSA:3.40.190.10 197 300 1.9E-28 T 11-11-2016 Gferi_RS20045 47f2e05698030acc24bca798a625cb0a 535 PIRSF PIRSF002741 1 535 7.2E-95 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS20045 47f2e05698030acc24bca798a625cb0a 535 Gene3D G3DSA:3.10.105.10 301 503 5.5E-44 T 11-11-2016 Gferi_RS20045 47f2e05698030acc24bca798a625cb0a 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 446 5.3E-82 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS16695 678fabd5727fd388c6ce7f2c01cf8b4d 282 SUPERFAMILY SSF48179 183 281 1.62E-32 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS16695 678fabd5727fd388c6ce7f2c01cf8b4d 282 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 181 206 - T 11-11-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS16695 678fabd5727fd388c6ce7f2c01cf8b4d 282 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3 181 2.0E-66 T 11-11-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS16695 678fabd5727fd388c6ce7f2c01cf8b4d 282 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 184 280 2.6E-34 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS16695 678fabd5727fd388c6ce7f2c01cf8b4d 282 SUPERFAMILY SSF51735 1 181 2.21E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS16695 678fabd5727fd388c6ce7f2c01cf8b4d 282 Gene3D G3DSA:1.10.1040.10 186 281 7.1E-36 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS16695 678fabd5727fd388c6ce7f2c01cf8b4d 282 Gene3D G3DSA:3.40.50.720 2 185 1.3E-63 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS16695 678fabd5727fd388c6ce7f2c01cf8b4d 282 PIRSF PIRSF000105 1 282 1.3E-90 T 11-11-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 Gferi_RS04770 79daa5d8941351cb1613c6ba98bdcbe3 250 SUPERFAMILY SSF52218 2 170 2.17E-22 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS04770 79daa5d8941351cb1613c6ba98bdcbe3 250 Gene3D G3DSA:3.40.50.360 3 238 1.4E-40 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS04770 79daa5d8941351cb1613c6ba98bdcbe3 250 Pfam PF03358 NADPH-dependent FMN reductase 2 137 2.1E-16 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 Gene3D G3DSA:3.30.565.10 194 364 2.5E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 SMART SM00387 255 365 4.4E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 306 4.4E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 320 4.4E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 363 4.4E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 344 4.4E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 SMART SM00388 141 209 5.6E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 256 362 5.5E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 Gene3D G3DSA:1.10.287.130 136 193 8.6E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 SUPERFAMILY SSF47384 126 210 2.55E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 SUPERFAMILY SSF55874 223 362 2.1E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25480 8049086356c9d85cca60ef7981524e50 365 Pfam PF00512 His Kinase A (phospho-acceptor) domain 142 200 1.3E-8 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 215 298 3.7E-34 T 11-11-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 Gene3D G3DSA:3.40.50.620 14 204 2.4E-80 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 PIRSF PIRSF000089 12 340 4.5E-121 T 11-11-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 Pfam PF01012 Electron transfer flavoprotein domain 16 194 4.2E-49 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 SUPERFAMILY SSF52467 215 335 8.41E-45 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 SMART SM00893 16 206 5.2E-54 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 SUPERFAMILY SSF52402 14 199 1.53E-58 T 11-11-2016 Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 Gene3D G3DSA:3.40.50.1220 210 336 4.3E-53 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS09630 88a4844991e6800021ce9550c88da0da 341 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 279 305 - T 11-11-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 SUPERFAMILY SSF55031 188 291 2.88E-28 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 380 3.9E-118 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 SUPERFAMILY SSF53187 5 201 1.38E-85 T 11-11-2016 Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 SUPERFAMILY SSF53187 302 392 1.38E-85 T 11-11-2016 Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 Gene3D G3DSA:3.40.630.10 2 182 2.2E-103 T 11-11-2016 Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 Gene3D G3DSA:3.40.630.10 302 393 2.2E-103 T 11-11-2016 Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 PIRSF PIRSF005962 1 396 1.4E-132 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 Pfam PF07687 Peptidase dimerisation domain 189 284 3.7E-12 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 Pfam PF01546 Peptidase family M20/M25/M40 75 383 1.7E-32 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS09945 9ccd0a3ac8c06305ca31e75c6bdd6725 396 Gene3D G3DSA:3.30.70.360 185 301 1.0E-37 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 SUPERFAMILY SSF53649 27 385 4.32E-103 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 SUPERFAMILY SSF53649 444 502 4.32E-103 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 ProSitePatterns PS00123 Alkaline phosphatase active site. 101 109 - T 11-11-2016 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 PRINTS PR00113 Alkaline phosphatase signature 44 64 1.9E-21 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 PRINTS PR00113 Alkaline phosphatase signature 101 116 1.9E-21 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 PRINTS PR00113 Alkaline phosphatase signature 183 193 1.9E-21 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 PRINTS PR00113 Alkaline phosphatase signature 139 159 1.9E-21 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 PRINTS PR00113 Alkaline phosphatase signature 260 289 1.9E-21 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 SMART SM00098 45 503 2.0E-28 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 Gene3D G3DSA:3.40.720.10 444 503 2.1E-119 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 Gene3D G3DSA:3.40.720.10 27 385 2.1E-119 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS17350 bd0bd8d1a977f5bb3181d67bfeaf54fd 505 Pfam PF00245 Alkaline phosphatase 45 500 1.9E-63 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS21175 762f3f947d9395ef26a5a32789b58265 245 SMART SM00850 141 233 1.2E-22 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS21175 762f3f947d9395ef26a5a32789b58265 245 SMART SM00448 2 119 0.0032 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21175 762f3f947d9395ef26a5a32789b58265 245 Gene3D G3DSA:2.40.50.40 133 199 3.4E-19 T 11-11-2016 Gferi_RS21175 762f3f947d9395ef26a5a32789b58265 245 SUPERFAMILY SSF52172 2 123 2.28E-11 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS21175 762f3f947d9395ef26a5a32789b58265 245 Pfam PF00072 Response regulator receiver domain 4 114 4.2E-8 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21175 762f3f947d9395ef26a5a32789b58265 245 Pfam PF04397 LytTr DNA-binding domain 144 232 2.2E-21 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS21175 762f3f947d9395ef26a5a32789b58265 245 Gene3D G3DSA:3.40.50.2300 1 117 3.0E-14 T 11-11-2016 Gferi_RS18895 ec7f845c94d4f141900ec9c7cad086f7 199 Pfam PF06527 TniQ 8 140 1.2E-19 T 11-11-2016 IPR009492 TniQ Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 Gene3D G3DSA:1.20.58.100 419 535 5.4E-29 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 SUPERFAMILY SSF46977 433 556 7.98E-23 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 Gene3D G3DSA:3.90.700.10 245 352 4.9E-25 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 Gene3D G3DSA:3.50.50.60 16 241 5.7E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 Gene3D G3DSA:3.50.50.60 360 406 5.7E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 PIRSF PIRSF000171 9 571 2.0E-199 T 11-11-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 Pfam PF00890 FAD binding domain 20 385 1.7E-23 T 11-11-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 SUPERFAMILY SSF51905 361 415 4.83E-56 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 SUPERFAMILY SSF51905 14 257 4.83E-56 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 SUPERFAMILY SSF56425 240 359 1.57E-31 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 21 40 9.5E-6 T 11-11-2016 Gferi_RS06100 14d36f5e6947ed4509d2b27ce5da6b84 571 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 9.5E-6 T 11-11-2016 Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 SUPERFAMILY SSF141523 124 230 1.09E-25 T 11-11-2016 Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 Pfam PF01476 LysM domain 17 60 3.0E-13 T 11-11-2016 IPR018392 LysM domain Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 Pfam PF01476 LysM domain 75 118 1.0E-8 T 11-11-2016 IPR018392 LysM domain Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 SMART SM00257 74 118 2.6E-9 T 11-11-2016 IPR018392 LysM domain Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 SMART SM00257 16 60 1.7E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 Gene3D G3DSA:2.40.440.10 123 230 5.9E-27 T 11-11-2016 Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 Pfam PF03734 L,D-transpeptidase catalytic domain 125 230 1.1E-13 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 SUPERFAMILY SSF54106 73 119 4.05E-9 T 11-11-2016 IPR018392 LysM domain Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 SUPERFAMILY SSF54106 15 60 9.81E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 Gene3D G3DSA:3.10.350.10 16 60 8.3E-15 T 11-11-2016 IPR018392 LysM domain Gferi_RS22955 ed759d948749abab1535298e685f1cce 231 Gene3D G3DSA:3.10.350.10 74 119 3.7E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS13400 6ed341b79777126bb3ddbb778969da65 354 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 1.4E-18 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS13400 6ed341b79777126bb3ddbb778969da65 354 Gene3D G3DSA:3.20.20.10 10 202 7.1E-15 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS13400 6ed341b79777126bb3ddbb778969da65 354 SUPERFAMILY SSF51419 9 223 1.96E-28 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS13575 d62c4832e86e56eb3299d91f42e45256 374 Pfam PF13426 PAS domain 32 119 2.4E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS13575 d62c4832e86e56eb3299d91f42e45256 374 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 183 372 8.3E-41 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS13575 d62c4832e86e56eb3299d91f42e45256 374 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 125 1.5E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS13575 d62c4832e86e56eb3299d91f42e45256 374 Gene3D G3DSA:3.30.450.20 18 131 1.7E-13 T 11-11-2016 Gferi_RS13575 d62c4832e86e56eb3299d91f42e45256 374 SMART SM00331 159 373 3.5E-29 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS13575 d62c4832e86e56eb3299d91f42e45256 374 SUPERFAMILY SSF81606 171 372 3.14E-5 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS13575 d62c4832e86e56eb3299d91f42e45256 374 SUPERFAMILY SSF55785 5 115 1.93E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS08120 1b6e65004fcbd537cc862f57553b83d2 270 Gene3D G3DSA:3.40.50.300 5 256 3.4E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08120 1b6e65004fcbd537cc862f57553b83d2 270 Pfam PF00005 ABC transporter 26 182 2.3E-23 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS08120 1b6e65004fcbd537cc862f57553b83d2 270 SUPERFAMILY SSF52540 5 253 4.69E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08120 1b6e65004fcbd537cc862f57553b83d2 270 SMART SM00382 34 232 7.0E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08120 1b6e65004fcbd537cc862f57553b83d2 270 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09255 5b60d7ab5988b43f2944f665593c0ba3 209 Gene3D G3DSA:3.40.50.300 19 194 1.9E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09255 5b60d7ab5988b43f2944f665593c0ba3 209 SUPERFAMILY SSF52540 24 195 3.39E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09255 5b60d7ab5988b43f2944f665593c0ba3 209 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 11 194 27.925 T 11-11-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Gferi_RS09255 5b60d7ab5988b43f2944f665593c0ba3 209 Pfam PF01926 50S ribosome-binding GTPase 26 135 2.2E-21 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS09255 5b60d7ab5988b43f2944f665593c0ba3 209 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 7 190 8.8E-70 T 11-11-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Gferi_RS18460 d11fc16e09bff4a535b89d5b68260fcb 142 SUPERFAMILY SSF57825 95 140 6.02E-14 T 11-11-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal Gferi_RS18460 d11fc16e09bff4a535b89d5b68260fcb 142 SUPERFAMILY SSF54893 1 93 1.44E-28 T 11-11-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal Gferi_RS18460 d11fc16e09bff4a535b89d5b68260fcb 142 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 2 91 1.6E-26 T 11-11-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal Gferi_RS18460 d11fc16e09bff4a535b89d5b68260fcb 142 Gene3D G3DSA:2.30.30.20 94 138 9.6E-17 T 11-11-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal Gferi_RS18460 d11fc16e09bff4a535b89d5b68260fcb 142 Gene3D G3DSA:3.30.70.140 3 93 3.7E-28 T 11-11-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal Gferi_RS18460 d11fc16e09bff4a535b89d5b68260fcb 142 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 4 92 1.0E-14 T 11-11-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal Gferi_RS18460 d11fc16e09bff4a535b89d5b68260fcb 142 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 95 137 6.2E-14 T 11-11-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal Gferi_RS11335 33d73aca5f297858e38754fb59b3e2b5 369 Gene3D G3DSA:3.40.50.720 1 166 4.6E-27 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11335 33d73aca5f297858e38754fb59b3e2b5 369 Gene3D G3DSA:2.60.120.10 167 200 3.9E-27 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS11335 33d73aca5f297858e38754fb59b3e2b5 369 Gene3D G3DSA:2.60.120.10 245 367 3.9E-27 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS11335 33d73aca5f297858e38754fb59b3e2b5 369 SUPERFAMILY SSF51735 1 213 5.51E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11335 33d73aca5f297858e38754fb59b3e2b5 369 SUPERFAMILY SSF51182 239 365 4.83E-24 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS11335 33d73aca5f297858e38754fb59b3e2b5 369 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 189 1.6E-16 T 11-11-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 Gferi_RS15995 2462980ca3c2d7f549ab167314d43c37 276 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 273 17.018 T 11-11-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Gferi_RS15995 2462980ca3c2d7f549ab167314d43c37 276 Pfam PF02673 Bacitracin resistance protein BacA 6 267 1.4E-70 T 11-11-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 24 719 2.4E-265 T 11-11-2016 IPR004811 RelA/SpoT family GO:0015969 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 Gene3D G3DSA:3.30.460.10 176 323 3.4E-52 T 11-11-2016 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 SMART SM00471 39 151 8.3E-10 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 Pfam PF02824 TGS domain 385 444 9.7E-23 T 11-11-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 SUPERFAMILY SSF55021 643 721 3.82E-14 T 11-11-2016 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 SUPERFAMILY SSF81271 372 444 1.96E-24 T 11-11-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 SUPERFAMILY SSF81301 178 389 7.68E-71 T 11-11-2016 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 Gene3D G3DSA:3.10.20.30 384 446 1.7E-24 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 SUPERFAMILY SSF109604 2 188 1.0E-73 T 11-11-2016 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 Pfam PF13328 HD domain 24 173 4.2E-49 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 Pfam PF13291 ACT domain 644 719 2.7E-22 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 Pfam PF04607 Region found in RelA / SpoT proteins 233 342 4.0E-40 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 SMART SM00954 233 343 1.4E-70 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 Gferi_RS26675 19a001a0af19d9ab8486cb3d6bf379b3 722 Gene3D G3DSA:3.30.70.260 645 717 5.2E-16 T 11-11-2016 Gferi_RS17485 eb5b24ac4a963c718f1d306b5493d04d 60 PIRSF PIRSF002211 1 60 1.0E-28 T 11-11-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Gferi_RS17485 eb5b24ac4a963c718f1d306b5493d04d 60 SUPERFAMILY SSF55129 3 60 3.66E-22 T 11-11-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Gferi_RS17485 eb5b24ac4a963c718f1d306b5493d04d 60 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 1.6E-22 T 11-11-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Gferi_RS17485 eb5b24ac4a963c718f1d306b5493d04d 60 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 3.2E-26 T 11-11-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Gferi_RS17485 eb5b24ac4a963c718f1d306b5493d04d 60 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 11-11-2016 IPR018038 Ribosomal protein L30, conserved site Gferi_RS17485 eb5b24ac4a963c718f1d306b5493d04d 60 Gene3D G3DSA:3.30.1390.20 3 59 6.7E-28 T 11-11-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Gferi_RS17485 eb5b24ac4a963c718f1d306b5493d04d 60 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 19.819 T 11-11-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 SUPERFAMILY SSF53163 2 147 1.62E-36 T 11-11-2016 IPR023430 Peptidase HybD-like domain Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 6 146 7.1E-38 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 PRINTS PR00446 Hydrogen uptake protein signature 4 16 1.3E-14 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 PRINTS PR00446 Hydrogen uptake protein signature 16 27 1.3E-14 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 PRINTS PR00446 Hydrogen uptake protein signature 35 52 1.3E-14 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 PRINTS PR00446 Hydrogen uptake protein signature 56 66 1.3E-14 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 PRINTS PR00446 Hydrogen uptake protein signature 67 83 1.3E-14 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 Gene3D G3DSA:3.40.50.1450 2 149 8.9E-41 T 11-11-2016 IPR023430 Peptidase HybD-like domain Gferi_RS20105 dc3034d520d7760b3b12a1e1f4b42304 156 Pfam PF01750 Hydrogenase maturation protease 21 143 5.7E-25 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS05390 4137556d9a2b7912dbcc71a10cd7beef 193 SUPERFAMILY SSF52172 1 129 1.11E-37 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS05390 4137556d9a2b7912dbcc71a10cd7beef 193 Pfam PF14559 Tetratricopeptide repeat 137 182 1.6E-6 T 11-11-2016 Gferi_RS05390 4137556d9a2b7912dbcc71a10cd7beef 193 SMART SM00448 2 113 5.9E-35 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05390 4137556d9a2b7912dbcc71a10cd7beef 193 Gene3D G3DSA:3.40.50.2300 1 122 3.0E-37 T 11-11-2016 Gferi_RS05390 4137556d9a2b7912dbcc71a10cd7beef 193 SUPERFAMILY SSF48452 115 181 8.01E-9 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS05390 4137556d9a2b7912dbcc71a10cd7beef 193 Gene3D G3DSA:1.25.40.10 123 180 1.0E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS05390 4137556d9a2b7912dbcc71a10cd7beef 193 Pfam PF00072 Response regulator receiver domain 4 113 4.7E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 SMART SM01003 4 131 1.5E-36 T 11-11-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 Gene3D G3DSA:3.40.50.1770 180 342 7.4E-17 T 11-11-2016 Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 SUPERFAMILY SSF52283 299 348 2.21E-40 T 11-11-2016 Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 SUPERFAMILY SSF52283 1 131 2.21E-40 T 11-11-2016 Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 SMART SM01002 143 291 1.6E-59 T 11-11-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 Gene3D G3DSA:3.40.50.1770 2 179 3.4E-42 T 11-11-2016 Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 SUPERFAMILY SSF51735 131 297 5.93E-41 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 137 346 1.1E-56 T 11-11-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Gferi_RS06540 6ad227b1a5c4b933a5ca6bad6e11079e 385 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 119 8.3E-32 T 11-11-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Gferi_RS22225 8268f84094f96a933e10173d48e884f7 146 Gene3D G3DSA:1.10.10.10 81 143 1.1E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22225 8268f84094f96a933e10173d48e884f7 146 SUPERFAMILY SSF88946 2 72 1.18E-15 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS22225 8268f84094f96a933e10173d48e884f7 146 SUPERFAMILY SSF88659 60 144 6.92E-10 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS22225 8268f84094f96a933e10173d48e884f7 146 Gene3D G3DSA:1.10.1740.10 2 77 7.7E-17 T 11-11-2016 Gferi_RS22225 8268f84094f96a933e10173d48e884f7 146 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 140 6.1E-20 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS22225 8268f84094f96a933e10173d48e884f7 146 Pfam PF04542 Sigma-70 region 2 3 57 6.1E-12 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00610 88f989569c7168248baa33327491c2e3 267 SUPERFAMILY SSF89550 2 83 2.55E-45 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS00610 88f989569c7168248baa33327491c2e3 267 SUPERFAMILY SSF89550 165 255 2.55E-45 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS00610 88f989569c7168248baa33327491c2e3 267 Gene3D G3DSA:3.20.20.140 157 247 7.1E-39 T 11-11-2016 Gferi_RS00610 88f989569c7168248baa33327491c2e3 267 Gene3D G3DSA:3.20.20.140 1 89 7.1E-39 T 11-11-2016 Gferi_RS00610 88f989569c7168248baa33327491c2e3 267 SMART SM00481 4 70 1.1E-16 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS00610 88f989569c7168248baa33327491c2e3 267 Pfam PF02811 PHP domain 5 132 6.4E-9 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS26175 9f4bfad6ea55f765ad456515bc893765 308 Pfam PF08239 Bacterial SH3 domain 45 96 4.6E-13 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type Gferi_RS26175 9f4bfad6ea55f765ad456515bc893765 308 Pfam PF08239 Bacterial SH3 domain 109 160 7.4E-9 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type Gferi_RS26175 9f4bfad6ea55f765ad456515bc893765 308 SMART SM00287 101 164 6.7E-7 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type Gferi_RS26175 9f4bfad6ea55f765ad456515bc893765 308 SMART SM00287 36 99 4.0E-8 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type Gferi_RS26175 9f4bfad6ea55f765ad456515bc893765 308 SUPERFAMILY SSF54001 185 307 1.77E-39 T 11-11-2016 Gferi_RS26175 9f4bfad6ea55f765ad456515bc893765 308 Pfam PF00877 NlpC/P60 family 195 305 4.0E-30 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS26175 9f4bfad6ea55f765ad456515bc893765 308 Gene3D G3DSA:3.90.1720.10 185 307 5.9E-45 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 Gene3D G3DSA:1.20.120.350 4 124 1.4E-23 T 11-11-2016 IPR027359 Voltage-dependent channel, four helix bundle domain Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 Gene3D G3DSA:1.20.5.110 175 211 1.2E-15 T 11-11-2016 Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 Pfam PF07885 Ion channel 134 210 9.4E-17 T 11-11-2016 IPR013099 Potassium channel domain Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 Gene3D G3DSA:1.10.287.70 125 173 1.5E-13 T 11-11-2016 Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 SUPERFAMILY SSF81324 6 209 7.14E-38 T 11-11-2016 Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 PRINTS PR00169 Potassium channel signature 126 149 7.2E-15 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 PRINTS PR00169 Potassium channel signature 154 176 7.2E-15 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 PRINTS PR00169 Potassium channel signature 183 209 7.2E-15 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Gferi_RS01090 5dd3114eb33a8b0f8490a2688c110d52 248 PRINTS PR00169 Potassium channel signature 37 60 7.2E-15 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 Gferi_RS17775 643f0ce158812a8f3803e5cc0562e9d7 277 SMART SM00481 6 71 6.0E-17 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS17775 643f0ce158812a8f3803e5cc0562e9d7 277 Gene3D G3DSA:3.20.20.140 4 89 1.8E-40 T 11-11-2016 Gferi_RS17775 643f0ce158812a8f3803e5cc0562e9d7 277 Gene3D G3DSA:3.20.20.140 157 261 1.8E-40 T 11-11-2016 Gferi_RS17775 643f0ce158812a8f3803e5cc0562e9d7 277 SUPERFAMILY SSF89550 4 84 3.66E-45 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS17775 643f0ce158812a8f3803e5cc0562e9d7 277 SUPERFAMILY SSF89550 165 255 3.66E-45 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS17775 643f0ce158812a8f3803e5cc0562e9d7 277 Pfam PF02811 PHP domain 7 122 6.1E-11 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS02390 ce101f34ced273f3f552011292b7ce0e 91 SUPERFAMILY SSF46992 3 85 4.05E-24 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS02390 ce101f34ced273f3f552011292b7ce0e 91 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 15.573 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS02390 ce101f34ced273f3f552011292b7ce0e 91 Pfam PF01649 Ribosomal protein S20 2 83 3.3E-23 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS02390 ce101f34ced273f3f552011292b7ce0e 91 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 8.3E-22 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS02390 ce101f34ced273f3f552011292b7ce0e 91 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 17 80 7.0E-17 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS02390 ce101f34ced273f3f552011292b7ce0e 91 Gene3D G3DSA:1.20.58.110 1 86 7.7E-25 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS05315 65a0221fd2469702701bec6ffc6cbc28 216 SUPERFAMILY SSF51735 2 131 4.51E-36 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05315 65a0221fd2469702701bec6ffc6cbc28 216 Pfam PF02080 TrkA-C domain 149 214 4.6E-11 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05315 65a0221fd2469702701bec6ffc6cbc28 216 Gene3D G3DSA:3.40.50.720 2 138 6.8E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05315 65a0221fd2469702701bec6ffc6cbc28 216 SUPERFAMILY SSF116726 130 214 5.23E-17 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05315 65a0221fd2469702701bec6ffc6cbc28 216 Gene3D G3DSA:3.30.70.1450 151 213 5.3E-16 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05315 65a0221fd2469702701bec6ffc6cbc28 216 Pfam PF02254 TrkA-N domain 4 119 7.9E-29 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 Pfam PF07687 Peptidase dimerisation domain 169 260 2.5E-12 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 Gene3D G3DSA:3.30.70.360 170 270 1.9E-22 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 PIRSF PIRSF037226 1 393 4.9E-151 T 11-11-2016 IPR017144 Peptidase M20A, amidohydrolase, predicted Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 Pfam PF01546 Peptidase family M20/M25/M40 90 202 1.1E-6 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 21 346 2.8E-66 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 SUPERFAMILY SSF55031 170 273 3.93E-19 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 Gene3D G3DSA:3.40.630.10 276 385 6.0E-67 T 11-11-2016 Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 Gene3D G3DSA:3.40.630.10 2 169 6.0E-67 T 11-11-2016 Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 SUPERFAMILY SSF53187 5 181 2.88E-64 T 11-11-2016 Gferi_RS25220 86617cd7f8b0df07c553456cae40d77b 396 SUPERFAMILY SSF53187 279 375 2.88E-64 T 11-11-2016 Gferi_RS00455 c68ca10abfe1942582d08f7c14628f50 473 Pfam PF13416 Bacterial extracellular solute-binding protein 58 352 4.3E-23 T 11-11-2016 Gferi_RS00455 c68ca10abfe1942582d08f7c14628f50 473 Gene3D G3DSA:3.40.190.10 318 355 2.4E-30 T 11-11-2016 Gferi_RS00455 c68ca10abfe1942582d08f7c14628f50 473 Gene3D G3DSA:3.40.190.10 40 156 2.4E-30 T 11-11-2016 Gferi_RS00455 c68ca10abfe1942582d08f7c14628f50 473 SUPERFAMILY SSF53850 19 472 8.8E-44 T 11-11-2016 Gferi_RS06395 6a1e40999c7039431d1451a33a0e23b0 105 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 24.925 T 11-11-2016 IPR002765 Uncharacterised protein family UPF0145 Gferi_RS06395 6a1e40999c7039431d1451a33a0e23b0 105 SUPERFAMILY SSF117782 1 104 3.14E-35 T 11-11-2016 IPR002765 Uncharacterised protein family UPF0145 Gferi_RS06395 6a1e40999c7039431d1451a33a0e23b0 105 Gene3D G3DSA:3.30.110.70 1 103 2.2E-35 T 11-11-2016 IPR002765 Uncharacterised protein family UPF0145 Gferi_RS06395 6a1e40999c7039431d1451a33a0e23b0 105 Pfam PF01906 Putative heavy-metal-binding 1 102 2.3E-37 T 11-11-2016 IPR002765 Uncharacterised protein family UPF0145 Gferi_RS14955 fe1727c96348e14db5510135f1930d44 474 SUPERFAMILY SSF51338 371 446 3.56E-24 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS14955 fe1727c96348e14db5510135f1930d44 474 SUPERFAMILY SSF51338 5 64 3.56E-24 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS14955 fe1727c96348e14db5510135f1930d44 474 SUPERFAMILY SSF51556 64 372 1.36E-66 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS14955 fe1727c96348e14db5510135f1930d44 474 Gene3D G3DSA:2.30.40.10 380 427 3.0E-11 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS14955 fe1727c96348e14db5510135f1930d44 474 Gene3D G3DSA:2.30.40.10 9 66 3.0E-11 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS14955 fe1727c96348e14db5510135f1930d44 474 Pfam PF01979 Amidohydrolase family 62 423 2.6E-47 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS14955 fe1727c96348e14db5510135f1930d44 474 Gene3D G3DSA:3.20.20.140 67 379 1.9E-69 T 11-11-2016 Gferi_RS14870 896aa76e6850841d0676c95283d554c6 202 Gene3D G3DSA:1.10.357.10 162 181 7.6E-24 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS14870 896aa76e6850841d0676c95283d554c6 202 Gene3D G3DSA:1.10.357.10 9 89 7.6E-24 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS14870 896aa76e6850841d0676c95283d554c6 202 SUPERFAMILY SSF46689 2 59 4.99E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14870 896aa76e6850841d0676c95283d554c6 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 9.4E-10 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS14870 896aa76e6850841d0676c95283d554c6 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 9.4E-10 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS14870 896aa76e6850841d0676c95283d554c6 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 55 8.1E-16 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07095 ccc2e60c855ff728c326bde0d5c0d74e 236 Gene3D G3DSA:3.40.50.300 5 223 9.8E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07095 ccc2e60c855ff728c326bde0d5c0d74e 236 Pfam PF00005 ABC transporter 28 169 2.8E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS07095 ccc2e60c855ff728c326bde0d5c0d74e 236 SUPERFAMILY SSF52540 6 226 1.2E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07095 ccc2e60c855ff728c326bde0d5c0d74e 236 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS07095 ccc2e60c855ff728c326bde0d5c0d74e 236 SMART SM00382 35 226 6.2E-16 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09650 02b7bbdfa2fc02514d63ff681422c1ec 431 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 5 139 1.5E-23 T 11-11-2016 IPR009827 Dicarboxylate carrier MatC N-terminal Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 Pfam PF07702 UTRA domain 100 236 1.5E-35 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 SUPERFAMILY SSF64288 63 241 2.51E-44 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 8.6E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 8.6E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 SMART SM00345 16 75 1.9E-13 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 SUPERFAMILY SSF46785 5 88 2.53E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 Gene3D G3DSA:1.10.10.10 5 73 5.3E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 1.1E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 Gene3D G3DSA:3.40.1410.10 74 241 6.4E-48 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS05335 98932f9e54612636dd6b51ac74bf0a82 242 SMART SM00866 96 236 6.0E-31 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 Pfam PF03466 LysR substrate binding domain 88 295 6.5E-27 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 Gene3D G3DSA:3.40.190.10 187 269 3.8E-18 T 11-11-2016 Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 SUPERFAMILY SSF53850 90 301 1.09E-25 T 11-11-2016 Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 SUPERFAMILY SSF46785 2 83 6.25E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.4E-19 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 Gene3D G3DSA:3.40.190.10 90 186 8.4E-8 T 11-11-2016 Gferi_RS07305 76fecfa50d23cfee93aa278238ddc1ae 304 Gene3D G3DSA:1.10.10.10 2 82 3.6E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00230 58f1031617dee3bf006dfd27cbfd71e5 573 SUPERFAMILY SSF52540 356 517 3.19E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00230 58f1031617dee3bf006dfd27cbfd71e5 573 SUPERFAMILY SSF52540 1 202 3.19E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00230 58f1031617dee3bf006dfd27cbfd71e5 573 SUPERFAMILY SSF52540 292 327 3.19E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00230 58f1031617dee3bf006dfd27cbfd71e5 573 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 519 2.3E-20 T 11-11-2016 IPR003395 RecF/RecN/SMC, N-terminal Gferi_RS00230 58f1031617dee3bf006dfd27cbfd71e5 573 Gene3D G3DSA:3.40.50.300 1 209 2.5E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00230 58f1031617dee3bf006dfd27cbfd71e5 573 PIRSF PIRSF003128 1 566 2.7E-184 T 11-11-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Gferi_RS00230 58f1031617dee3bf006dfd27cbfd71e5 573 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 562 5.2E-179 T 11-11-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Gferi_RS00230 58f1031617dee3bf006dfd27cbfd71e5 573 Gene3D G3DSA:3.40.50.300 441 517 1.9E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22230 abdb6035c9d29022c4e9fbe8e0bc310d 174 Pfam PF13490 Putative zinc-finger 5 39 1.4E-5 T 11-11-2016 IPR027383 Putative zinc-finger Gferi_RS18135 ffd42ddbd349465f5de5de051a215ee3 221 SUPERFAMILY SSF52777 5 216 6.35E-57 T 11-11-2016 Gferi_RS18135 ffd42ddbd349465f5de5de051a215ee3 221 ProDom PD002660 TRANSFERASE CHLORAMPHENICOL ACYLTRANSFERASE ACETYLTRANSFERASE ANTIBIOTIC RESISTANCE PLASMID CAT O-ACETYLTRANSFERASE DIRECT 17 199 3.0E-58 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS18135 ffd42ddbd349465f5de5de051a215ee3 221 PIRSF PIRSF000440 3 218 6.3E-68 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS18135 ffd42ddbd349465f5de5de051a215ee3 221 Gene3D G3DSA:3.30.559.10 5 213 2.7E-65 T 11-11-2016 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 Gferi_RS18135 ffd42ddbd349465f5de5de051a215ee3 221 SMART SM01059 4 209 2.2E-64 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS18135 ffd42ddbd349465f5de5de051a215ee3 221 Pfam PF00302 Chloramphenicol acetyltransferase 5 209 1.7E-54 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS16395 693c5adc413d4275e44db41bbe35b7fd 384 SUPERFAMILY SSF51726 13 380 9.94E-40 T 11-11-2016 Gferi_RS16395 693c5adc413d4275e44db41bbe35b7fd 384 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 163 379 9.2E-11 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS16395 693c5adc413d4275e44db41bbe35b7fd 384 Gene3D G3DSA:3.20.20.210 5 116 1.1E-21 T 11-11-2016 Gferi_RS16395 693c5adc413d4275e44db41bbe35b7fd 384 Gene3D G3DSA:3.20.20.210 149 380 1.1E-21 T 11-11-2016 Gferi_RS08075 aa81bf39934f44e15d1c51b10317eab2 217 SUPERFAMILY SSF48317 45 206 5.56E-9 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS08075 aa81bf39934f44e15d1c51b10317eab2 217 Pfam PF14378 PAP2 superfamily 54 192 6.0E-9 T 11-11-2016 IPR026841 Inositolphosphotransferase Aur1/Ipt1 Gferi_RS08075 aa81bf39934f44e15d1c51b10317eab2 217 Gene3D G3DSA:1.20.144.10 58 206 1.0E-4 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS16635 fae7328d905f2da4ba1dfc9e7a49e7d3 362 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 12 351 1.0E-145 T 11-11-2016 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 Gferi_RS16635 fae7328d905f2da4ba1dfc9e7a49e7d3 362 Pfam PF00676 Dehydrogenase E1 component 42 325 1.8E-90 T 11-11-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Gferi_RS16635 fae7328d905f2da4ba1dfc9e7a49e7d3 362 SUPERFAMILY SSF52518 7 355 3.61E-104 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS16635 fae7328d905f2da4ba1dfc9e7a49e7d3 362 Gene3D G3DSA:3.40.50.970 9 351 5.2E-128 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS09490 f04f40c40cd71f67e12ae3d98ef218a6 327 Gene3D G3DSA:3.30.1330.10 10 141 6.7E-25 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS09490 f04f40c40cd71f67e12ae3d98ef218a6 327 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 304 3.3E-29 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS09490 f04f40c40cd71f67e12ae3d98ef218a6 327 SUPERFAMILY SSF55326 4 143 2.62E-25 T 11-11-2016 Gferi_RS09490 f04f40c40cd71f67e12ae3d98ef218a6 327 PIRSF PIRSF005644 1 327 2.4E-81 T 11-11-2016 IPR011854 Hydrogenase expression/formation protein HypE Gferi_RS09490 f04f40c40cd71f67e12ae3d98ef218a6 327 Gene3D G3DSA:3.90.650.10 148 309 1.3E-28 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS09490 f04f40c40cd71f67e12ae3d98ef218a6 327 Pfam PF00586 AIR synthase related protein, N-terminal domain 34 137 2.5E-14 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS09490 f04f40c40cd71f67e12ae3d98ef218a6 327 SUPERFAMILY SSF56042 146 314 2.54E-39 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS17960 87dc82c6fb5c1ce6d5f2c08f23f10f39 264 Gene3D G3DSA:3.20.20.70 114 249 5.4E-16 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS17960 87dc82c6fb5c1ce6d5f2c08f23f10f39 264 SUPERFAMILY SSF51690 89 262 7.85E-24 T 11-11-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Gferi_RS17960 87dc82c6fb5c1ce6d5f2c08f23f10f39 264 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 13 82 4.1E-6 T 11-11-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Gferi_RS17960 87dc82c6fb5c1ce6d5f2c08f23f10f39 264 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 89 262 7.5E-19 T 11-11-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Gferi_RS17960 87dc82c6fb5c1ce6d5f2c08f23f10f39 264 SUPERFAMILY SSF54675 6 88 9.18E-7 T 11-11-2016 Gferi_RS17960 87dc82c6fb5c1ce6d5f2c08f23f10f39 264 Gene3D G3DSA:3.90.1170.20 14 113 5.4E-11 T 11-11-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Gferi_RS23640 6b772f73a23aa253b1ab1212b8d85c21 257 Gene3D G3DSA:3.30.1820.10 125 187 2.0E-4 T 11-11-2016 IPR014965 Putative amino acid metabolism Gferi_RS23640 6b772f73a23aa253b1ab1212b8d85c21 257 TIGRFAM TIGR01633 phi3626_gp14_N: putative phage tail component, N-terminal domain 31 130 2.9E-13 T 11-11-2016 IPR006520 Streptococcus phage 7201, Orf34, N-terminal Gferi_RS23640 6b772f73a23aa253b1ab1212b8d85c21 257 Pfam PF05709 Phage tail protein 21 242 7.0E-23 T 11-11-2016 IPR008841 Siphovirus-type tail component Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 Pfam PF00694 Aconitase C-terminal domain 522 575 2.4E-23 T 11-11-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 SUPERFAMILY SSF53732 2 418 1.44E-142 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 SUPERFAMILY SSF52016 435 640 2.55E-49 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 Gene3D G3DSA:3.30.499.10 270 459 3.0E-57 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 ProSitePatterns PS01244 Aconitase family signature 2. 349 362 - T 11-11-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 PRINTS PR00415 Aconitase family signature 200 213 2.8E-22 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 PRINTS PR00415 Aconitase family signature 349 362 2.8E-22 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 PRINTS PR00415 Aconitase family signature 110 123 2.8E-22 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 PRINTS PR00415 Aconitase family signature 186 199 2.8E-22 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 PRINTS PR00415 Aconitase family signature 124 139 2.8E-22 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 TIGRFAM TIGR01342 acon_putative: putative aconitate hydratase 5 639 7.3E-257 T 11-11-2016 IPR006250 Aconitase, putative Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 ProSitePatterns PS00450 Aconitase family signature 1. 289 305 - T 11-11-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 Gene3D G3DSA:3.40.1060.10 157 262 2.1E-35 T 11-11-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 Gene3D G3DSA:3.30.499.10 24 154 4.2E-45 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 Gene3D G3DSA:3.20.19.10 460 639 3.5E-41 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS25320 db8279d442ad4f40ebd78c75c78739a9 642 Pfam PF00330 Aconitase family (aconitate hydratase) 20 407 2.1E-106 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS12595 f1a524be58c6b72725bd4971323fa283 241 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 238 2.6E-89 T 11-11-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS12595 f1a524be58c6b72725bd4971323fa283 241 Gene3D G3DSA:3.40.50.1360 1 236 8.9E-96 T 11-11-2016 Gferi_RS12595 f1a524be58c6b72725bd4971323fa283 241 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 11 226 5.1E-21 T 11-11-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 Gferi_RS12595 f1a524be58c6b72725bd4971323fa283 241 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 241 43.458 T 11-11-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS12595 f1a524be58c6b72725bd4971323fa283 241 SUPERFAMILY SSF100950 1 236 5.58E-93 T 11-11-2016 Gferi_RS12595 f1a524be58c6b72725bd4971323fa283 241 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 120 138 - T 11-11-2016 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS08810 e09c46aa2fe0844f393d329d6f15cc16 454 Pfam PF07287 Protein of unknown function (DUF1446) 83 342 8.1E-25 T 11-11-2016 IPR010839 Protein of unknown function DUF1446 Gferi_RS10325 d1455be6d96bfe47239cf31f01776107 452 SUPERFAMILY SSF81301 7 147 1.31E-39 T 11-11-2016 Gferi_RS10325 d1455be6d96bfe47239cf31f01776107 452 Gene3D G3DSA:3.30.460.10 9 150 7.9E-46 T 11-11-2016 Gferi_RS10325 d1455be6d96bfe47239cf31f01776107 452 Gene3D G3DSA:1.10.3090.10 151 331 1.1E-57 T 11-11-2016 Gferi_RS10325 d1455be6d96bfe47239cf31f01776107 452 Gene3D G3DSA:1.10.3090.10 394 415 1.1E-57 T 11-11-2016 Gferi_RS10325 d1455be6d96bfe47239cf31f01776107 452 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 178 236 4.1E-17 T 11-11-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Gferi_RS10325 d1455be6d96bfe47239cf31f01776107 452 Pfam PF13735 tRNA nucleotidyltransferase domain 2 putative 299 444 3.4E-10 T 11-11-2016 IPR032810 CCA-adding enzyme, C-terminal Gferi_RS10325 d1455be6d96bfe47239cf31f01776107 452 SUPERFAMILY SSF81891 149 449 1.44E-57 T 11-11-2016 Gferi_RS10325 d1455be6d96bfe47239cf31f01776107 452 Pfam PF01743 Poly A polymerase head domain 27 150 4.4E-39 T 11-11-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Gferi_RS18930 fb2d6ea82410b341732bf1def2f7d53f 918 Pfam PF13086 AAA domain 177 527 2.5E-24 T 11-11-2016 Gferi_RS18930 fb2d6ea82410b341732bf1def2f7d53f 918 SUPERFAMILY SSF52540 454 729 8.68E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18930 fb2d6ea82410b341732bf1def2f7d53f 918 SUPERFAMILY SSF52540 174 244 8.68E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18930 fb2d6ea82410b341732bf1def2f7d53f 918 SUPERFAMILY SSF52540 758 785 8.68E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18930 fb2d6ea82410b341732bf1def2f7d53f 918 Gene3D G3DSA:3.40.50.300 487 594 3.3E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18930 fb2d6ea82410b341732bf1def2f7d53f 918 Gene3D G3DSA:3.40.50.300 166 297 3.3E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18930 fb2d6ea82410b341732bf1def2f7d53f 918 Pfam PF10881 Protein of unknown function (DUF2726) 792 913 4.8E-11 T 11-11-2016 IPR024402 Domain of unknown function DUF2726 Gferi_RS18930 fb2d6ea82410b341732bf1def2f7d53f 918 Pfam PF13087 AAA domain 562 731 2.8E-25 T 11-11-2016 Gferi_RS04140 ab91f7f677add1101f27b5f96c8fabd2 200 Pfam PF04286 Protein of unknown function (DUF445) 96 198 1.5E-15 T 11-11-2016 IPR007383 Protein of unknown function DUF445 Gferi_RS04140 ab91f7f677add1101f27b5f96c8fabd2 200 Pfam PF04286 Protein of unknown function (DUF445) 12 136 6.3E-19 T 11-11-2016 IPR007383 Protein of unknown function DUF445 Gferi_RS07930 ce3335eb6b921d5b0c1f48a939efd9f0 298 SUPERFAMILY SSF56112 21 254 6.04E-28 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS07930 ce3335eb6b921d5b0c1f48a939efd9f0 298 Pfam PF01636 Phosphotransferase enzyme family 22 261 8.5E-23 T 11-11-2016 IPR002575 Aminoglycoside phosphotransferase Gferi_RS07930 ce3335eb6b921d5b0c1f48a939efd9f0 298 Gene3D G3DSA:3.90.1200.10 117 258 3.7E-18 T 11-11-2016 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 SMART SM00437 262 549 4.3E-88 T 11-11-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 299 314 - T 11-11-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 Gene3D G3DSA:3.40.50.140 5 153 1.3E-48 T 11-11-2016 IPR006171 Toprim domain Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 Pfam PF01131 DNA topoisomerase 152 584 7.6E-121 T 11-11-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 387 403 1.4E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 512 526 1.4E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 186 204 1.4E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 100 113 1.4E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 305 314 1.4E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 SUPERFAMILY SSF56712 4 599 2.49E-174 T 11-11-2016 IPR023405 DNA topoisomerase, type IA, core domain Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 Gene3D G3DSA:1.10.460.10 155 209 9.9E-53 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 Gene3D G3DSA:1.10.460.10 471 598 9.9E-53 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 SMART SM00436 126 216 2.4E-41 T 11-11-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 Pfam PF01751 Toprim domain 5 134 6.0E-15 T 11-11-2016 IPR006171 Toprim domain Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 SMART SM00493 3 126 7.5E-16 T 11-11-2016 IPR006171 Toprim domain Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 Gene3D G3DSA:2.70.20.10 353 470 2.6E-38 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 Hamap MF_00953 DNA topoisomerase 3 [topB]. 3 638 65.764 T 11-11-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 Gene3D G3DSA:2.70.20.10 210 324 1.7E-21 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Gferi_RS15080 9764f192026889aa34b65fdf15b6a633 729 TIGRFAM TIGR01056 topB: DNA topoisomerase III 3 726 6.0E-265 T 11-11-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 SMART SM00448 5 117 1.8E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 SUPERFAMILY SSF52540 149 386 6.48E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 Gene3D G3DSA:1.10.10.60 403 451 1.0E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 Gene3D G3DSA:3.40.50.300 147 315 5.3E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 SUPERFAMILY SSF52172 4 188 6.55E-37 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 Pfam PF02954 Bacterial regulatory protein, Fis family 409 448 9.5E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 Pfam PF00158 Sigma-54 interaction domain 147 311 1.6E-65 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 Pfam PF00072 Response regulator receiver domain 7 117 3.9E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 Gene3D G3DSA:3.40.50.2300 6 131 2.1E-30 T 11-11-2016 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 Gene3D G3DSA:1.10.8.60 316 387 5.1E-20 T 11-11-2016 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 414 431 1.7E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 451 1.7E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 SMART SM00382 164 307 3.6E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19575 ea0220cd348a64e0a490b9f164ecdc74 452 SUPERFAMILY SSF46689 358 450 5.82E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS16430 82b04ad1035c654ad3802f5ea292ec71 307 PIRSF PIRSF000450 1 307 9.2E-155 T 11-11-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 Gferi_RS16430 82b04ad1035c654ad3802f5ea292ec71 307 Gene3D G3DSA:3.40.50.880 34 301 9.7E-128 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS16430 82b04ad1035c654ad3802f5ea292ec71 307 SUPERFAMILY SSF52317 17 297 2.34E-107 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS16430 82b04ad1035c654ad3802f5ea292ec71 307 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 4.2E-145 T 11-11-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 Gferi_RS16430 82b04ad1035c654ad3802f5ea292ec71 307 Hamap MF_00295 Homoserine O-succinyltransferase [metA]. 1 301 56.303 T 11-11-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 Gferi_RS16430 82b04ad1035c654ad3802f5ea292ec71 307 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 2.0E-91 T 11-11-2016 Gferi_RS16430 82b04ad1035c654ad3802f5ea292ec71 307 Pfam PF04204 Homoserine O-succinyltransferase 2 299 3.8E-142 T 11-11-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 Gferi_RS02835 3dbabad33c8d52efd1f8f06f44a160b6 88 SUPERFAMILY SSF55594 1 86 5.1E-24 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS02835 3dbabad33c8d52efd1f8f06f44a160b6 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 3.6E-25 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS02835 3dbabad33c8d52efd1f8f06f44a160b6 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 9.5E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS02835 3dbabad33c8d52efd1f8f06f44a160b6 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 9.5E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS02835 3dbabad33c8d52efd1f8f06f44a160b6 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 9.5E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS02835 3dbabad33c8d52efd1f8f06f44a160b6 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS02835 3dbabad33c8d52efd1f8f06f44a160b6 88 Gene3D G3DSA:3.30.1340.10 1 85 7.9E-27 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS02835 3dbabad33c8d52efd1f8f06f44a160b6 88 Pfam PF00381 PTS HPr component phosphorylation site 3 82 9.2E-24 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS03645 385ed14de6c88a75b78d6c9a7ec9d90e 160 Gene3D G3DSA:3.40.50.450 4 156 2.1E-29 T 11-11-2016 Gferi_RS03645 385ed14de6c88a75b78d6c9a7ec9d90e 160 Pfam PF06908 Protein of unknown function (DUF1273) 17 154 5.4E-14 T 11-11-2016 IPR010697 Protein of unknown function DUF1273 Gferi_RS03645 385ed14de6c88a75b78d6c9a7ec9d90e 160 SUPERFAMILY SSF102405 4 156 3.11E-28 T 11-11-2016 Gferi_RS06915 16483048de96f5f4330d0482b974b96b 292 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 290 5.8E-97 T 11-11-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581 Gferi_RS06915 16483048de96f5f4330d0482b974b96b 292 Pfam PF04321 RmlD substrate binding domain 1 291 8.0E-99 T 11-11-2016 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581 Gferi_RS06915 16483048de96f5f4330d0482b974b96b 292 SUPERFAMILY SSF51735 1 290 1.83E-94 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06915 16483048de96f5f4330d0482b974b96b 292 Gene3D G3DSA:3.40.50.720 1 238 3.7E-66 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11990 7ed4cc8edfef2790e4ecfd6a1d2cbaf1 315 Pfam PF00892 EamA-like transporter family 15 147 7.8E-25 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS11990 7ed4cc8edfef2790e4ecfd6a1d2cbaf1 315 Pfam PF00892 EamA-like transporter family 162 298 1.1E-23 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS11990 7ed4cc8edfef2790e4ecfd6a1d2cbaf1 315 SUPERFAMILY SSF103481 200 301 7.45E-13 T 11-11-2016 Gferi_RS11990 7ed4cc8edfef2790e4ecfd6a1d2cbaf1 315 SUPERFAMILY SSF103481 53 151 3.66E-12 T 11-11-2016 Gferi_RS11955 27ad9c602ee34fed3bf524b9e2c06b25 829 Pfam PF12704 MacB-like periplasmic core domain 19 229 2.5E-9 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS11955 27ad9c602ee34fed3bf524b9e2c06b25 829 Pfam PF12704 MacB-like periplasmic core domain 482 661 8.9E-7 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS11955 27ad9c602ee34fed3bf524b9e2c06b25 829 Pfam PF02687 FtsX-like permease family 704 821 5.3E-18 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS11955 27ad9c602ee34fed3bf524b9e2c06b25 829 Pfam PF02687 FtsX-like permease family 258 380 1.1E-17 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS24360 3ae3383258b51d77b3fae408cecd4b5f 542 Pfam PF02690 Na+/Pi-cotransporter 175 260 2.9E-16 T 11-11-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Gferi_RS24360 3ae3383258b51d77b3fae408cecd4b5f 542 Pfam PF02690 Na+/Pi-cotransporter 13 148 1.2E-52 T 11-11-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Gferi_RS24360 3ae3383258b51d77b3fae408cecd4b5f 542 SUPERFAMILY SSF109755 327 538 7.33E-54 T 11-11-2016 Gferi_RS24360 3ae3383258b51d77b3fae408cecd4b5f 542 Gene3D G3DSA:1.20.58.220 442 537 2.2E-23 T 11-11-2016 Gferi_RS24360 3ae3383258b51d77b3fae408cecd4b5f 542 Gene3D G3DSA:1.20.58.220 329 439 2.3E-22 T 11-11-2016 Gferi_RS24360 3ae3383258b51d77b3fae408cecd4b5f 542 Pfam PF01895 PhoU domain 348 432 2.6E-15 T 11-11-2016 IPR026022 PhoU domain Gferi_RS24360 3ae3383258b51d77b3fae408cecd4b5f 542 Pfam PF01895 PhoU domain 451 533 3.3E-16 T 11-11-2016 IPR026022 PhoU domain Gferi_RS24360 3ae3383258b51d77b3fae408cecd4b5f 542 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 314 1.2E-77 T 11-11-2016 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Gferi_RS08410 5cb40c63e41eca8488ef2403a6025ca4 498 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 19 438 3.3E-136 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 SMART SM00283 354 664 7.0E-63 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 451 647 1.1E-44 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 Gene3D G3DSA:3.30.450.20 180 277 9.7E-9 T 11-11-2016 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 516 545 8.7E-7 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 564 593 8.7E-7 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 432 8.7E-7 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 SMART SM00304 308 360 1.2E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 SMART SM00304 605 661 9.8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 Pfam PF02743 Cache domain 48 270 2.8E-38 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 Gene3D G3DSA:1.10.287.950 415 621 2.1E-50 T 11-11-2016 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 Gene3D G3DSA:1.10.287.950 339 414 5.7E-4 T 11-11-2016 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 SUPERFAMILY SSF103190 90 193 1.81E-14 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 SUPERFAMILY SSF58104 328 362 7.85E-71 T 11-11-2016 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 SUPERFAMILY SSF58104 395 664 7.85E-71 T 11-11-2016 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 Gene3D G3DSA:3.30.450.20 82 179 5.3E-30 T 11-11-2016 Gferi_RS16735 9201ffbc1cf1673d8e21f4657d004d04 665 Pfam PF00672 HAMP domain 289 356 2.0E-17 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 Pfam PF13083 KH domain 64 131 1.3E-16 T 11-11-2016 Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 Gene3D G3DSA:3.30.1370.50 137 205 1.3E-28 T 11-11-2016 IPR001374 R3H domain GO:0003676 Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 Gene3D G3DSA:3.30.300.120 59 136 1.1E-24 T 11-11-2016 Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 SUPERFAMILY SSF82708 147 203 3.34E-10 T 11-11-2016 IPR001374 R3H domain GO:0003676 Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 SMART SM00393 126 205 1.6E-25 T 11-11-2016 IPR001374 R3H domain GO:0003676 Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 SMART SM01245 5 57 6.9E-22 T 11-11-2016 IPR032782 Jag, N-terminal Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 Pfam PF01424 R3H domain 145 203 1.9E-16 T 11-11-2016 IPR001374 R3H domain GO:0003676 Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 Pfam PF14804 Jag N-terminus 7 55 4.6E-20 T 11-11-2016 IPR032782 Jag, N-terminal Gferi_RS13285 4dcdd25b3e55d1944484d3bc746a80a5 205 Gene3D G3DSA:3.30.30.80 1 57 5.8E-21 T 11-11-2016 IPR032782 Jag, N-terminal Gferi_RS16570 47468ca2845a03de0b780da5fac7fd78 176 Pfam PF01957 NfeD-like C-terminal, partner-binding 60 175 1.0E-6 T 11-11-2016 IPR002810 NfeD-like, C-terminal domain Gferi_RS16570 47468ca2845a03de0b780da5fac7fd78 176 Gene3D G3DSA:2.40.50.140 113 175 7.0E-5 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS09720 c45e669890b9d0b70bc6c672c21a2670 457 Pfam PF02667 Short chain fatty acid transporter 17 452 5.6E-97 T 11-11-2016 IPR006160 Short chain fatty acid transporter AtoE Gferi_RS03490 4417eeae9c6db1210c6bb1e8db63bddb 562 Pfam PF00239 Resolvase, N terminal domain 26 175 1.3E-22 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03490 4417eeae9c6db1210c6bb1e8db63bddb 562 Gene3D G3DSA:3.40.50.1390 26 153 1.8E-21 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03490 4417eeae9c6db1210c6bb1e8db63bddb 562 Pfam PF07508 Recombinase 199 315 7.7E-25 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS03490 4417eeae9c6db1210c6bb1e8db63bddb 562 SMART SM00857 24 176 4.5E-37 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03490 4417eeae9c6db1210c6bb1e8db63bddb 562 SUPERFAMILY SSF53041 24 176 1.7E-30 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03490 4417eeae9c6db1210c6bb1e8db63bddb 562 Pfam PF13408 Recombinase zinc beta ribbon domain 334 390 3.7E-6 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS10110 7acfab4c84f7094f34f4e1259e7ad71a 155 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 5 100 5.7E-12 T 11-11-2016 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 Gferi_RS20070 38ec8acb3f454b3df81ad858c67fd822 320 Gene3D G3DSA:3.40.50.300 2 254 6.0E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20070 38ec8acb3f454b3df81ad858c67fd822 320 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS20070 38ec8acb3f454b3df81ad858c67fd822 320 SUPERFAMILY SSF52540 3 251 2.44E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20070 38ec8acb3f454b3df81ad858c67fd822 320 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 316 6.9E-17 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS20070 38ec8acb3f454b3df81ad858c67fd822 320 SMART SM00382 38 239 9.7E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20070 38ec8acb3f454b3df81ad858c67fd822 320 Pfam PF00005 ABC transporter 30 181 3.1E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS20070 38ec8acb3f454b3df81ad858c67fd822 320 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 297 1.8E-11 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS24935 3185ec94e468c3c9c60289ac85a90fd2 420 SUPERFAMILY SSF111369 155 195 8.24E-14 T 11-11-2016 Gferi_RS24935 3185ec94e468c3c9c60289ac85a90fd2 420 SUPERFAMILY SSF111369 59 121 8.24E-14 T 11-11-2016 Gferi_RS24935 3185ec94e468c3c9c60289ac85a90fd2 420 SUPERFAMILY SSF111369 203 339 2.88E-18 T 11-11-2016 Gferi_RS24935 3185ec94e468c3c9c60289ac85a90fd2 420 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 202 416 5.7E-52 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 Gferi_RS24935 3185ec94e468c3c9c60289ac85a90fd2 420 Gene3D G3DSA:2.40.50.100 69 102 7.0E-22 T 11-11-2016 Gferi_RS24935 3185ec94e468c3c9c60289ac85a90fd2 420 Gene3D G3DSA:2.40.50.100 229 262 7.0E-22 T 11-11-2016 Gferi_RS24935 3185ec94e468c3c9c60289ac85a90fd2 420 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 335 7.8E-24 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS25540 9a47bb8dab6ac97e7e60909ad9ce307d 273 Pfam PF00877 NlpC/P60 family 166 246 3.7E-21 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS25540 9a47bb8dab6ac97e7e60909ad9ce307d 273 Pfam PF08239 Bacterial SH3 domain 20 64 2.9E-7 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type Gferi_RS25540 9a47bb8dab6ac97e7e60909ad9ce307d 273 Gene3D G3DSA:3.90.1720.10 148 264 1.2E-30 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain Gferi_RS25540 9a47bb8dab6ac97e7e60909ad9ce307d 273 SUPERFAMILY SSF54001 154 252 4.9E-30 T 11-11-2016 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Gene3D G3DSA:3.30.365.10 292 367 2.7E-35 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Gene3D G3DSA:3.30.365.10 118 184 2.7E-35 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Gene3D G3DSA:3.30.365.10 460 595 8.7E-45 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Gene3D G3DSA:3.30.365.10 185 290 4.1E-36 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 18 128 4.6E-29 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 SUPERFAMILY SSF54665 2 147 6.54E-42 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 162 697 3.2E-167 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 SMART SM01008 18 130 9.8E-41 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Gene3D G3DSA:3.30.365.10 369 459 3.1E-66 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Gene3D G3DSA:3.30.365.10 613 758 3.1E-66 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 SUPERFAMILY SSF56003 122 758 3.4E-186 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS25050 6c7b1f58264d336703988ccc18b9eec2 760 Gene3D G3DSA:3.90.1170.50 2 117 6.9E-39 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS12110 3e2ed2aa811edfa481c31fc8decd24c3 344 Gene3D G3DSA:2.40.40.10 268 331 4.6E-8 T 11-11-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain Gferi_RS12110 3e2ed2aa811edfa481c31fc8decd24c3 344 Pfam PF07501 G5 domain 151 224 1.9E-17 T 11-11-2016 IPR011098 G5 domain Gferi_RS12110 3e2ed2aa811edfa481c31fc8decd24c3 344 SMART SM01208 148 226 2.5E-23 T 11-11-2016 IPR011098 G5 domain Gferi_RS12110 3e2ed2aa811edfa481c31fc8decd24c3 344 Pfam PF06725 3D domain 277 344 6.8E-22 T 11-11-2016 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 Gferi_RS12110 3e2ed2aa811edfa481c31fc8decd24c3 344 Pfam PF03990 Domain of unknown function (DUF348) 38 78 1.8E-5 T 11-11-2016 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 Gferi_RS12110 3e2ed2aa811edfa481c31fc8decd24c3 344 Pfam PF03990 Domain of unknown function (DUF348) 95 133 1.7E-10 T 11-11-2016 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 Gferi_RS12110 3e2ed2aa811edfa481c31fc8decd24c3 344 SUPERFAMILY SSF50685 278 325 4.88E-10 T 11-11-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain Gferi_RS23140 c627cc4b9c9c76768cc398421ebd6e7e 81 Pfam PF06949 Protein of unknown function (DUF1292) 12 79 2.5E-12 T 11-11-2016 IPR009711 Uncharacterised protein family UPF0473 Gferi_RS13955 524249243eb9c68f47bb861724c60312 119 Pfam PF01695 IstB-like ATP binding protein 6 92 9.7E-19 T 11-11-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 Gferi_RS13955 524249243eb9c68f47bb861724c60312 119 Gene3D G3DSA:3.40.50.300 9 92 9.5E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11515 5f39e8b504f984205f40c4a93ca9a5dc 518 Pfam PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit 5 511 5.6E-277 T 11-11-2016 IPR015130 D-Lysine 5,6-aminomutase alpha subunit Gferi_RS11515 5f39e8b504f984205f40c4a93ca9a5dc 518 Gene3D G3DSA:3.20.20.440 2 514 2.5E-250 T 11-11-2016 IPR015130 D-Lysine 5,6-aminomutase alpha subunit Gferi_RS11515 5f39e8b504f984205f40c4a93ca9a5dc 518 SUPERFAMILY SSF51703 2 515 3.37E-234 T 11-11-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS01720 625ae35db1f2420f4bb94a0be9f69a72 400 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 392 4.3E-149 T 11-11-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5 Gferi_RS01720 625ae35db1f2420f4bb94a0be9f69a72 400 SUPERFAMILY SSF52507 1 179 7.19E-65 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS01720 625ae35db1f2420f4bb94a0be9f69a72 400 Gene3D G3DSA:3.40.50.1950 3 185 9.4E-69 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS01720 625ae35db1f2420f4bb94a0be9f69a72 400 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 185 368 2.3E-75 T 11-11-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Gferi_RS01720 625ae35db1f2420f4bb94a0be9f69a72 400 SUPERFAMILY SSF102645 182 396 3.79E-79 T 11-11-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Gferi_RS01720 625ae35db1f2420f4bb94a0be9f69a72 400 Gene3D G3DSA:3.40.50.10300 186 396 2.0E-86 T 11-11-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Gferi_RS01720 625ae35db1f2420f4bb94a0be9f69a72 400 Pfam PF02441 Flavoprotein 6 132 5.1E-37 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 ProSitePatterns PS00761 Signal peptidases I signature 3. 129 142 - T 11-11-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 8 166 7.1E-44 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 92 1.5E-18 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 24 40 1.5E-18 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 124 143 1.5E-18 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 Pfam PF00717 Peptidase S24-like 31 103 5.2E-16 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 Gene3D G3DSA:2.10.109.10 124 172 6.8E-35 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 Gene3D G3DSA:2.10.109.10 21 90 6.8E-35 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 ProSitePatterns PS00760 Signal peptidases I lysine active site. 82 94 - T 11-11-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 ProSitePatterns PS00501 Signal peptidases I serine active site. 33 40 - T 11-11-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Gferi_RS24065 22b3c2e75084bc32e0e44f218bdf2c72 173 SUPERFAMILY SSF51306 24 172 9.42E-43 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C Gferi_RS19140 d154020ecd3d006f83e6d3b337f25f64 87 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 1.1E-28 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19140 d154020ecd3d006f83e6d3b337f25f64 87 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS19140 d154020ecd3d006f83e6d3b337f25f64 87 SUPERFAMILY SSF55594 1 87 1.44E-24 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19140 d154020ecd3d006f83e6d3b337f25f64 87 Pfam PF00381 PTS HPr component phosphorylation site 3 82 1.4E-24 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19140 d154020ecd3d006f83e6d3b337f25f64 87 Gene3D G3DSA:3.30.1340.10 1 87 8.5E-29 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19140 d154020ecd3d006f83e6d3b337f25f64 87 PRINTS PR00107 Phosphocarrier protein signature 53 70 3.4E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19140 d154020ecd3d006f83e6d3b337f25f64 87 PRINTS PR00107 Phosphocarrier protein signature 13 29 3.4E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19140 d154020ecd3d006f83e6d3b337f25f64 87 PRINTS PR00107 Phosphocarrier protein signature 38 53 3.4E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS14945 21d663768471fe03042188692e0818e5 454 SUPERFAMILY SSF52540 142 386 1.21E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14945 21d663768471fe03042188692e0818e5 454 Pfam PF08448 PAS fold 17 114 3.5E-5 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS14945 21d663768471fe03042188692e0818e5 454 Gene3D G3DSA:3.30.450.20 15 108 1.1E-8 T 11-11-2016 Gferi_RS14945 21d663768471fe03042188692e0818e5 454 Gene3D G3DSA:1.10.8.60 315 389 6.3E-20 T 11-11-2016 Gferi_RS14945 21d663768471fe03042188692e0818e5 454 Pfam PF00158 Sigma-54 interaction domain 143 308 8.7E-60 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS14945 21d663768471fe03042188692e0818e5 454 SUPERFAMILY SSF46689 403 453 8.96E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14945 21d663768471fe03042188692e0818e5 454 Gene3D G3DSA:3.40.50.300 140 314 8.2E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14945 21d663768471fe03042188692e0818e5 454 SUPERFAMILY SSF55785 15 109 2.44E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS14945 21d663768471fe03042188692e0818e5 454 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 167 180 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS14945 21d663768471fe03042188692e0818e5 454 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS14945 21d663768471fe03042188692e0818e5 454 Gene3D G3DSA:1.10.10.60 403 452 3.6E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14945 21d663768471fe03042188692e0818e5 454 SMART SM00382 163 313 9.2E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14945 21d663768471fe03042188692e0818e5 454 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS14945 21d663768471fe03042188692e0818e5 454 Pfam PF02954 Bacterial regulatory protein, Fis family 412 450 1.4E-5 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 Pfam PF08448 PAS fold 116 219 1.7E-9 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 Gene3D G3DSA:3.30.565.10 431 601 4.6E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 Gene3D G3DSA:3.30.450.20 218 344 4.8E-22 T 11-11-2016 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 SUPERFAMILY SSF55874 433 605 1.96E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 586 599 2.3E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 541 2.3E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 555 2.3E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 580 2.3E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 228 352 7.8E-17 T 11-11-2016 IPR000014 PAS domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 107 226 6.2E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 Gene3D G3DSA:1.10.287.130 364 430 8.0E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 SUPERFAMILY SSF55785 216 344 1.19E-21 T 11-11-2016 IPR000014 PAS domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 SUPERFAMILY SSF47384 361 444 1.26E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 SMART SM00388 372 444 3.0E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 SUPERFAMILY SSF55785 100 217 1.73E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 SMART SM00091 110 177 1.6E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 SMART SM00091 231 295 2.7E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 Gene3D G3DSA:3.30.450.20 104 217 7.5E-16 T 11-11-2016 Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 Pfam PF13426 PAS domain 242 344 2.7E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 SMART SM00387 490 602 1.5E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 491 599 4.0E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16105 66400a71a460561439861ade0afe0d1a 632 Pfam PF00512 His Kinase A (phospho-acceptor) domain 373 444 1.4E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Gene3D G3DSA:3.30.70.20 156 216 6.5E-11 T 11-11-2016 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 243 527 2.3E-96 T 11-11-2016 IPR004108 Iron hydrogenase, large subunit, C-terminal Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Gene3D G3DSA:4.10.260.20 535 593 2.0E-24 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 SUPERFAMILY SSF53920 210 588 1.31E-131 T 11-11-2016 IPR009016 Iron hydrogenase Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 12 97 6.2E-17 T 11-11-2016 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Gene3D G3DSA:3.40.50.1780 320 450 1.4E-74 T 11-11-2016 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Gene3D G3DSA:3.40.50.1780 217 268 1.4E-74 T 11-11-2016 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 SUPERFAMILY SSF54292 13 95 2.67E-15 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Gene3D G3DSA:3.10.20.30 6 90 6.2E-8 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 SMART SM00902 533 592 1.2E-25 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 104 143 1.1E-17 T 11-11-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Pfam PF00037 4Fe-4S binding domain 207 226 7.1E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 210 221 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 SMART SM00929 104 144 2.6E-19 T 11-11-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 SUPERFAMILY SSF54862 97 235 1.8E-34 T 11-11-2016 Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 Pfam PF02256 Iron hydrogenase small subunit 537 591 5.9E-24 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS22890 e7be60f1b9813d7884e6da8ee4b7d2a5 594 TIGRFAM TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A 159 531 1.1E-159 T 11-11-2016 IPR013352 Iron hydrogenase, subset GO:0005506|GO:0008901|GO:0051536|GO:0055114 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1584 1682 3.5E-15 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Pfam PF00041 Fibronectin type III domain 1814 1887 9.6E-7 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SMART SM00060 1808 1889 5.3E-6 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 995 1096 1.3E-16 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 665 746 9.7E-13 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1255 1299 3.2E-13 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1207 1251 2.1E-13 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1411 1459 3.2E-13 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 939 979 4.1E-8 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1493 1564 1.3E-5 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1755 1803 1.6E-6 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1683 1718 1.6E-6 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 752 790 4.1E-8 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1100 1141 2.1E-13 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Pfam PF01833 IPT/TIG domain 1490 1563 1.8E-5 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Pfam PF01833 IPT/TIG domain 997 1095 1.5E-9 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Pfam PF01833 IPT/TIG domain 1587 1668 9.7E-8 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Pfam PF01833 IPT/TIG domain 666 746 1.3E-8 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SUPERFAMILY SSF49265 1804 1901 2.51E-12 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SMART SM00429 996 1096 9.9E-6 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SMART SM00429 1586 1681 0.0082 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SMART SM00429 665 747 2.1E-6 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SUPERFAMILY SSF81296 665 746 8.2E-9 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SUPERFAMILY SSF81296 1586 1681 1.96E-9 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1807 1903 5.9E-11 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SUPERFAMILY SSF81296 1101 1127 6.27E-10 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SUPERFAMILY SSF81296 1198 1252 6.27E-10 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 SUPERFAMILY SSF81296 989 1095 1.12E-9 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS11490 89f8c61caa022d895a6604e1eeab3b65 2122 Gene3D G3DSA:2.60.40.10 1328 1367 4.0E-4 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS09465 41f36e17d41f88c21004f307d2ceee74 210 Pfam PF01725 Ham1 family 5 193 2.4E-53 T 11-11-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 Gferi_RS09465 41f36e17d41f88c21004f307d2ceee74 210 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 3 197 47.889 T 11-11-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 Gferi_RS09465 41f36e17d41f88c21004f307d2ceee74 210 Gene3D G3DSA:3.90.950.10 1 198 2.4E-75 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like Gferi_RS09465 41f36e17d41f88c21004f307d2ceee74 210 SUPERFAMILY SSF52972 3 197 2.88E-66 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like Gferi_RS09465 41f36e17d41f88c21004f307d2ceee74 210 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 4 195 6.8E-56 T 11-11-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 Gferi_RS21410 a354fc65c88a05cd2ed1327b74690a56 206 SMART SM00382 1 189 1.2E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS21410 a354fc65c88a05cd2ed1327b74690a56 206 Gene3D G3DSA:3.40.50.300 2 201 2.0E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21410 a354fc65c88a05cd2ed1327b74690a56 206 Pfam PF00005 ABC transporter 2 143 1.0E-23 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS21410 a354fc65c88a05cd2ed1327b74690a56 206 ProSitePatterns PS00211 ABC transporters family signature. 115 129 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS21410 a354fc65c88a05cd2ed1327b74690a56 206 SUPERFAMILY SSF52540 2 202 5.86E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25190 acc23cae037c87bdee7542fc0e417afd 285 Gene3D G3DSA:3.40.50.10490 102 233 3.2E-16 T 11-11-2016 Gferi_RS25190 acc23cae037c87bdee7542fc0e417afd 285 Pfam PF01380 SIS domain 128 253 3.2E-15 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS25190 acc23cae037c87bdee7542fc0e417afd 285 Gene3D G3DSA:1.10.10.10 2 76 2.2E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25190 acc23cae037c87bdee7542fc0e417afd 285 SUPERFAMILY SSF53697 99 268 2.45E-18 T 11-11-2016 Gferi_RS25190 acc23cae037c87bdee7542fc0e417afd 285 SUPERFAMILY SSF46689 3 77 4.48E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25190 acc23cae037c87bdee7542fc0e417afd 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 72 1.0E-10 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Gferi_RS01685 c91049984e6be1ca0053998203095e9e 243 SUPERFAMILY SSF81606 1 241 8.89E-66 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS01685 c91049984e6be1ca0053998203095e9e 243 SMART SM00331 7 242 4.6E-36 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS01685 c91049984e6be1ca0053998203095e9e 243 Pfam PF13672 Protein phosphatase 2C 14 204 2.1E-15 T 11-11-2016 Gferi_RS01685 c91049984e6be1ca0053998203095e9e 243 SMART SM00332 1 240 9.3E-23 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS01685 c91049984e6be1ca0053998203095e9e 243 Gene3D G3DSA:3.60.40.10 1 241 6.2E-71 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 404 556 2.4E-34 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 Gene3D G3DSA:3.40.50.970 361 560 1.1E-51 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 200 338 3.2E-35 T 11-11-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 SUPERFAMILY SSF52518 5 182 9.16E-57 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 SUPERFAMILY SSF52518 380 564 2.28E-48 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 SUPERFAMILY SSF52467 160 368 1.56E-44 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 Gene3D G3DSA:3.40.50.1220 193 360 4.3E-46 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 440 459 - T 11-11-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 175 5.3E-60 T 11-11-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Gferi_RS13455 c83f55acaeddf9fcc0ecf7e4ac6bff8d 600 Gene3D G3DSA:3.40.50.970 5 176 1.4E-62 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS15600 8c7a52e85dcd5334d9375fb28003d77c 154 PIRSF PIRSF031501 1 152 2.5E-38 T 11-11-2016 IPR010387 Queuosine precursor transporter QueT GO:0005886 Gferi_RS15600 8c7a52e85dcd5334d9375fb28003d77c 154 Pfam PF06177 QueT transporter 7 147 4.9E-47 T 11-11-2016 IPR010387 Queuosine precursor transporter QueT GO:0005886 Gferi_RS06645 2670eceb3a6a720353a4110bc5ca3b6d 208 Gene3D G3DSA:1.10.357.10 9 192 1.5E-32 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS06645 2670eceb3a6a720353a4110bc5ca3b6d 208 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS06645 2670eceb3a6a720353a4110bc5ca3b6d 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 60 2.4E-16 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS06645 2670eceb3a6a720353a4110bc5ca3b6d 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 2.4E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS06645 2670eceb3a6a720353a4110bc5ca3b6d 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 2.4E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS06645 2670eceb3a6a720353a4110bc5ca3b6d 208 SUPERFAMILY SSF46689 7 76 3.39E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18350 7e98ba1bba870eb3cc2e55312dc4c0f7 455 Gene3D G3DSA:3.40.309.10 238 288 1.3E-29 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS18350 7e98ba1bba870eb3cc2e55312dc4c0f7 455 Gene3D G3DSA:3.40.309.10 324 410 1.3E-29 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS18350 7e98ba1bba870eb3cc2e55312dc4c0f7 455 SUPERFAMILY SSF53720 26 281 1.2E-71 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS18350 7e98ba1bba870eb3cc2e55312dc4c0f7 455 SUPERFAMILY SSF53720 310 445 1.2E-71 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS18350 7e98ba1bba870eb3cc2e55312dc4c0f7 455 Gene3D G3DSA:3.40.605.10 24 237 4.0E-27 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS18350 7e98ba1bba870eb3cc2e55312dc4c0f7 455 Pfam PF00171 Aldehyde dehydrogenase family 25 424 1.4E-36 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS18350 7e98ba1bba870eb3cc2e55312dc4c0f7 455 PIRSF PIRSF036410 1 455 3.9E-213 T 11-11-2016 IPR012408 Acetaldehyde/propionaldehyde dehydrogenase, EutE/PduP-related Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 Gene3D G3DSA:1.10.460.10 463 583 2.1E-54 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 Gene3D G3DSA:1.10.460.10 155 208 2.1E-54 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 Gene3D G3DSA:2.70.20.10 353 462 3.5E-33 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 SMART SM00437 261 538 8.5E-75 T 11-11-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 SUPERFAMILY SSF56712 2 586 3.66E-182 T 11-11-2016 IPR023405 DNA topoisomerase, type IA, core domain Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 Gene3D G3DSA:3.40.50.140 2 152 2.1E-51 T 11-11-2016 IPR006171 Toprim domain Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 SMART SM00493 2 125 1.0E-20 T 11-11-2016 IPR006171 Toprim domain Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 658 8.4E-204 T 11-11-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 Pfam PF01751 Toprim domain 4 133 2.9E-14 T 11-11-2016 IPR006171 Toprim domain Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 Pfam PF01131 DNA topoisomerase 152 572 4.7E-130 T 11-11-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 298 313 - T 11-11-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 Gene3D G3DSA:2.70.20.10 209 323 3.5E-21 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 SMART SM00436 125 215 4.5E-37 T 11-11-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 2.0E-25 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 185 203 2.0E-25 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 501 515 2.0E-25 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 304 313 2.0E-25 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS09195 6394cf2ed9a4de9004a839a4c930ee25 718 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 387 403 2.0E-25 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS11365 49db02388e5a9dd31854ba8c2f3fc329 216 Pfam PF02585 GlcNAc-PI de-N-acetylase 4 120 8.1E-22 T 11-11-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 Gferi_RS11365 49db02388e5a9dd31854ba8c2f3fc329 216 Gene3D G3DSA:3.40.50.10320 2 214 4.9E-55 T 11-11-2016 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 Gferi_RS11365 49db02388e5a9dd31854ba8c2f3fc329 216 SUPERFAMILY SSF102588 1 213 1.44E-46 T 11-11-2016 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 Gferi_RS20725 df40c3ef8329ac74e9f3407d0faa8bf9 457 SUPERFAMILY SSF102114 38 345 1.01E-53 T 11-11-2016 Gferi_RS20725 df40c3ef8329ac74e9f3407d0faa8bf9 457 Gene3D G3DSA:3.20.20.70 39 366 1.6E-54 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS20725 df40c3ef8329ac74e9f3407d0faa8bf9 457 SMART SM00876 263 368 3.2E-34 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS20725 df40c3ef8329ac74e9f3407d0faa8bf9 457 SMART SM00729 78 292 2.0E-4 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS20725 df40c3ef8329ac74e9f3407d0faa8bf9 457 Pfam PF04055 Radical SAM superfamily 84 234 1.4E-14 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS20725 df40c3ef8329ac74e9f3407d0faa8bf9 457 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 263 365 2.8E-27 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS20725 df40c3ef8329ac74e9f3407d0faa8bf9 457 TIGRFAM TIGR03955 rSAM_HydG: [FeFe] hydrogenase H-cluster radical SAM maturase HydG 3 455 2.4E-159 T 11-11-2016 IPR024007 [FeFe]-hydrogenase maturation HydG, radical SAM Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 227 511 6.4E-95 T 11-11-2016 IPR004108 Iron hydrogenase, large subunit, C-terminal Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Gene3D G3DSA:3.10.20.30 3 113 5.7E-5 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Gene3D G3DSA:3.30.70.20 136 198 7.8E-14 T 11-11-2016 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Gene3D G3DSA:3.40.50.1780 199 252 5.3E-75 T 11-11-2016 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Gene3D G3DSA:3.40.50.1780 304 434 5.3E-75 T 11-11-2016 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 194 205 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 151 162 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 SUPERFAMILY SSF54862 77 214 2.26E-30 T 11-11-2016 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 SUPERFAMILY SSF54292 4 76 4.36E-16 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Gene3D G3DSA:4.10.260.20 517 576 3.0E-25 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 85 123 1.9E-13 T 11-11-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 TIGRFAM TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A 143 515 9.3E-159 T 11-11-2016 IPR013352 Iron hydrogenase, subset GO:0005506|GO:0008901|GO:0051536|GO:0055114 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 SMART SM00902 516 575 8.5E-26 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 SMART SM00929 85 126 3.7E-10 T 11-11-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 2.9E-17 T 11-11-2016 Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Pfam PF00037 4Fe-4S binding domain 191 209 1.8E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 Pfam PF02256 Iron hydrogenase small subunit 520 574 2.6E-24 T 11-11-2016 IPR003149 Iron hydrogenase, small subunit Gferi_RS09405 97a8aff9e0ca8e122d0c93d340e2a342 576 SUPERFAMILY SSF53920 193 572 7.32E-128 T 11-11-2016 IPR009016 Iron hydrogenase Gferi_RS13485 91cd9d5f58e8c661b5760baf5f5a56a1 316 SUPERFAMILY SSF103481 48 150 1.02E-12 T 11-11-2016 Gferi_RS13485 91cd9d5f58e8c661b5760baf5f5a56a1 316 Pfam PF00892 EamA-like transporter family 161 295 1.4E-24 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS13485 91cd9d5f58e8c661b5760baf5f5a56a1 316 Pfam PF00892 EamA-like transporter family 15 146 3.5E-24 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS13485 91cd9d5f58e8c661b5760baf5f5a56a1 316 SUPERFAMILY SSF103481 221 297 2.35E-14 T 11-11-2016 Gferi_RS23080 c58087f994579360369320fd377ffa46 238 Gene3D G3DSA:3.20.20.140 5 232 9.6E-60 T 11-11-2016 Gferi_RS23080 c58087f994579360369320fd377ffa46 238 Pfam PF02811 PHP domain 6 148 9.1E-8 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS23080 c58087f994579360369320fd377ffa46 238 SMART SM00481 5 79 8.6E-11 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS23080 c58087f994579360369320fd377ffa46 238 SUPERFAMILY SSF89550 5 237 1.2E-62 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS14980 09d88a0231e07be0209bbe3308471400 441 SUPERFAMILY SSF52242 49 120 2.35E-6 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS14980 09d88a0231e07be0209bbe3308471400 441 SUPERFAMILY SSF102114 182 412 2.22E-25 T 11-11-2016 Gferi_RS14980 09d88a0231e07be0209bbe3308471400 441 Pfam PF02310 B12 binding domain 21 123 1.0E-8 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS14980 09d88a0231e07be0209bbe3308471400 441 Gene3D G3DSA:3.80.30.20 187 376 1.5E-30 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS14980 09d88a0231e07be0209bbe3308471400 441 Pfam PF04055 Radical SAM superfamily 195 350 1.3E-12 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS14980 09d88a0231e07be0209bbe3308471400 441 SMART SM00729 186 391 2.7E-15 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS09660 d677f40e9c96c812a4e109c9ea9930c7 531 Gene3D G3DSA:1.10.10.60 469 495 7.7E-5 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09660 d677f40e9c96c812a4e109c9ea9930c7 531 Pfam PF13556 PucR C-terminal helix-turn-helix domain 459 513 4.6E-11 T 11-11-2016 IPR025736 PucR C-terminal helix-turn-helix domain Gferi_RS18960 6de106adc56bce757801a84ac1c669ab 135 Gene3D G3DSA:3.30.60.20 2 29 1.2E-4 T 11-11-2016 Gferi_RS18960 6de106adc56bce757801a84ac1c669ab 135 Pfam PF09862 Protein of unknown function (DUF2089) 9 130 1.2E-44 T 11-11-2016 IPR018658 Protein of unknown function DUF2089 Gferi_RS11350 0d7e0283b0b91463a1ab23822a0f7a09 345 SUPERFAMILY SSF55729 157 311 6.36E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11350 0d7e0283b0b91463a1ab23822a0f7a09 345 Pfam PF13480 Acetyltransferase (GNAT) domain 159 297 6.0E-10 T 11-11-2016 Gferi_RS11350 0d7e0283b0b91463a1ab23822a0f7a09 345 Gene3D G3DSA:3.40.630.30 142 302 1.2E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 Pfam PF02817 e3 binding domain 128 163 2.3E-13 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 Gene3D G3DSA:4.10.320.10 125 175 2.8E-17 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 SUPERFAMILY SSF52777 191 422 9.78E-84 T 11-11-2016 Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-11-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 SUPERFAMILY SSF47005 123 167 5.89E-11 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 194 423 7.1E-87 T 11-11-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 Gene3D G3DSA:2.40.50.100 1 84 6.0E-26 T 11-11-2016 Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 SUPERFAMILY SSF51230 1 88 2.49E-26 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 Pfam PF00364 Biotin-requiring enzyme 4 76 7.8E-23 T 11-11-2016 IPR000089 Biotin/lipoyl attachment Gferi_RS16645 3323a7bcf15629765ac28c698823d3ab 425 Gene3D G3DSA:3.30.559.10 191 422 6.0E-87 T 11-11-2016 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 Pfam PF00158 Sigma-54 interaction domain 269 436 1.7E-62 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 Gene3D G3DSA:1.10.8.60 442 519 7.9E-21 T 11-11-2016 Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 SUPERFAMILY SSF46689 483 573 3.94E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 Gene3D G3DSA:1.10.10.60 525 570 7.5E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 SUPERFAMILY SSF52540 269 512 1.63E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 SMART SM00382 289 433 3.6E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 356 371 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 Gene3D G3DSA:3.40.50.300 267 441 6.9E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 Pfam PF02954 Bacterial regulatory protein, Fis family 528 571 1.7E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 293 306 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS04570 420b3f75a04d3122933e347e05913150 580 Gene3D G3DSA:3.30.450.20 161 222 9.5E-4 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 Gene3D G3DSA:3.30.70.1430 23 114 6.4E-16 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 SUPERFAMILY SSF82693 23 112 1.31E-15 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 Gene3D G3DSA:3.30.70.1320 128 160 1.2E-4 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 Gene3D G3DSA:3.30.70.1320 252 286 1.2E-4 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 SUPERFAMILY SSF82714 685 766 9.81E-14 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 Gene3D G3DSA:3.30.2090.10 684 767 3.1E-14 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 Gene3D G3DSA:3.30.2090.10 164 247 6.6E-15 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 SUPERFAMILY SSF82866 770 986 2.49E-46 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 Gene3D G3DSA:1.20.1640.10 287 479 4.3E-45 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 PRINTS PR00702 Acriflavin resistance protein family signature 444 467 1.4E-23 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 PRINTS PR00702 Acriflavin resistance protein family signature 419 442 1.4E-23 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 PRINTS PR00702 Acriflavin resistance protein family signature 312 335 1.4E-23 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 PRINTS PR00702 Acriflavin resistance protein family signature 366 390 1.4E-23 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 PRINTS PR00702 Acriflavin resistance protein family signature 19 37 1.4E-23 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 SUPERFAMILY SSF82714 165 247 1.22E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 SUPERFAMILY SSF82866 273 472 2.22E-37 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 SUPERFAMILY SSF82693 250 300 1.65E-11 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 SUPERFAMILY SSF82693 121 163 1.65E-11 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 Gene3D G3DSA:1.10.3850.10 774 985 2.2E-55 T 11-11-2016 Gferi_RS12430 cb648e332edb44a3b827c7cd54a58e49 1003 Pfam PF00873 AcrB/AcrD/AcrF family 1 983 1.7E-172 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS05255 9176dafb5763a56f75e1eb765464d1af 710 Gene3D G3DSA:3.40.50.2030 494 709 1.1E-71 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05255 9176dafb5763a56f75e1eb765464d1af 710 Gene3D G3DSA:3.40.50.2030 317 493 1.9E-49 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05255 9176dafb5763a56f75e1eb765464d1af 710 TIGRFAM TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit 87 709 5.5E-201 T 11-11-2016 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS05255 9176dafb5763a56f75e1eb765464d1af 710 Gene3D G3DSA:1.20.1270.30 139 314 1.4E-51 T 11-11-2016 IPR016101 CO dehydrogenase, alpha-bundle GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS05255 9176dafb5763a56f75e1eb765464d1af 710 Pfam PF03063 Prismane/CO dehydrogenase family 125 689 1.5E-129 T 11-11-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05255 9176dafb5763a56f75e1eb765464d1af 710 SUPERFAMILY SSF56821 73 709 4.27E-173 T 11-11-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 Gferi_RS11835 9176dafb5763a56f75e1eb765464d1af 710 Gene3D G3DSA:3.40.50.2030 494 709 1.1E-71 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS11835 9176dafb5763a56f75e1eb765464d1af 710 Gene3D G3DSA:3.40.50.2030 317 493 1.9E-49 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS11835 9176dafb5763a56f75e1eb765464d1af 710 TIGRFAM TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit 87 709 5.5E-201 T 11-11-2016 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS11835 9176dafb5763a56f75e1eb765464d1af 710 Gene3D G3DSA:1.20.1270.30 139 314 1.4E-51 T 11-11-2016 IPR016101 CO dehydrogenase, alpha-bundle GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS11835 9176dafb5763a56f75e1eb765464d1af 710 Pfam PF03063 Prismane/CO dehydrogenase family 125 689 1.5E-129 T 11-11-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS11835 9176dafb5763a56f75e1eb765464d1af 710 SUPERFAMILY SSF56821 73 709 4.27E-173 T 11-11-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 Gferi_RS22620 d4b3fa207a2a83aa8f332061d5913faa 275 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 273 1.7E-82 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS22620 d4b3fa207a2a83aa8f332061d5913faa 275 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 3 272 9.1E-72 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS22620 d4b3fa207a2a83aa8f332061d5913faa 275 SUPERFAMILY SSF51569 2 272 4.69E-77 T 11-11-2016 Gferi_RS22620 d4b3fa207a2a83aa8f332061d5913faa 275 PIRSF PIRSF001359 1 275 3.9E-76 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS22620 d4b3fa207a2a83aa8f332061d5913faa 275 Gene3D G3DSA:3.20.20.70 1 272 1.3E-84 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS13600 fa414ea61ad1dab52d4001c8884aa956 292 Pfam PF00924 Mechanosensitive ion channel 81 278 5.8E-50 T 11-11-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Gferi_RS13600 fa414ea61ad1dab52d4001c8884aa956 292 SUPERFAMILY SSF50182 124 186 1.37E-14 T 11-11-2016 IPR010920 LSM domain Gferi_RS13600 fa414ea61ad1dab52d4001c8884aa956 292 SUPERFAMILY SSF82861 32 122 1.26E-16 T 11-11-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Gferi_RS13600 fa414ea61ad1dab52d4001c8884aa956 292 Gene3D G3DSA:3.30.70.100 189 276 1.2E-13 T 11-11-2016 Gferi_RS13600 fa414ea61ad1dab52d4001c8884aa956 292 SUPERFAMILY SSF82689 187 286 1.29E-21 T 11-11-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Gferi_RS13600 fa414ea61ad1dab52d4001c8884aa956 292 Gene3D G3DSA:2.30.30.60 139 185 1.6E-15 T 11-11-2016 Gferi_RS17435 0cf52d54c38061c6d09890c8709c2d02 67 TIGRFAM TIGR00012 L29: ribosomal protein uL29 6 60 1.6E-24 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17435 0cf52d54c38061c6d09890c8709c2d02 67 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 11-11-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17435 0cf52d54c38061c6d09890c8709c2d02 67 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.227 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17435 0cf52d54c38061c6d09890c8709c2d02 67 Gene3D G3DSA:1.10.287.310 1 63 3.7E-31 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17435 0cf52d54c38061c6d09890c8709c2d02 67 Pfam PF00831 Ribosomal L29 protein 5 60 1.4E-26 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17435 0cf52d54c38061c6d09890c8709c2d02 67 SUPERFAMILY SSF46561 1 63 8.24E-24 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS12615 b4d4501d9c40425df5d05570546e7d57 302 SUPERFAMILY SSF51556 12 300 1.67E-92 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS12615 b4d4501d9c40425df5d05570546e7d57 302 Pfam PF02126 Phosphotriesterase family 10 300 4.5E-87 T 11-11-2016 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 Gferi_RS12615 b4d4501d9c40425df5d05570546e7d57 302 PIRSF PIRSF016839 1 302 1.7E-98 T 11-11-2016 Gferi_RS12615 b4d4501d9c40425df5d05570546e7d57 302 Gene3D G3DSA:3.20.20.140 3 301 3.3E-113 T 11-11-2016 Gferi_RS12180 76c368e2e99db95bddf11250881d40a8 223 Gene3D G3DSA:3.40.30.10 13 40 5.5E-55 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS12180 76c368e2e99db95bddf11250881d40a8 223 Gene3D G3DSA:3.40.30.10 78 222 5.5E-55 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS12180 76c368e2e99db95bddf11250881d40a8 223 Pfam PF00578 AhpC/TSA family 81 201 2.4E-31 T 11-11-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Gferi_RS12180 76c368e2e99db95bddf11250881d40a8 223 ProSitePatterns PS00194 Thioredoxin family active site. 109 127 - T 11-11-2016 IPR017937 Thioredoxin, conserved site GO:0045454 Gferi_RS12180 76c368e2e99db95bddf11250881d40a8 223 SUPERFAMILY SSF52833 78 222 4.63E-46 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS18560 7a334edbc863eaeea96a9ef71865f539 367 Pfam PF06032 Protein of unknown function (DUF917) 7 364 7.8E-108 T 11-11-2016 IPR010318 Protein of unknown function DUF917 Gferi_RS18560 7a334edbc863eaeea96a9ef71865f539 367 Gene3D G3DSA:2.40.390.10 230 357 3.1E-31 T 11-11-2016 IPR024071 Protein of unknown function DUF917, C-terminal Gferi_RS18560 7a334edbc863eaeea96a9ef71865f539 367 SUPERFAMILY SSF160991 1 364 1.31E-96 T 11-11-2016 Gferi_RS18560 7a334edbc863eaeea96a9ef71865f539 367 Gene3D G3DSA:3.40.1610.10 1 229 2.2E-59 T 11-11-2016 IPR027479 Protein of unknown function DUF917, N-terminal Gferi_RS21565 7ddb36203f492478fa42b042b06d3b04 344 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 45 301 8.8E-90 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS21565 7ddb36203f492478fa42b042b06d3b04 344 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 45 328 1.2E-98 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS21565 7ddb36203f492478fa42b042b06d3b04 344 PIRSF PIRSF006470 11 344 3.3E-116 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 Gene3D G3DSA:3.90.78.10 230 303 6.7E-33 T 11-11-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 203 301 9.4E-30 T 11-11-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 SUPERFAMILY SSF56194 199 303 1.11E-37 T 11-11-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 Pfam PF01565 FAD binding domain 38 165 4.1E-27 T 11-11-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 Gene3D G3DSA:3.30.465.10 91 229 1.7E-42 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 25 302 2.2E-75 T 11-11-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 Gene3D G3DSA:3.30.43.10 4 88 1.8E-28 T 11-11-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 304 89.858 T 11-11-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS20890 136e08bc3c5b5d454ae8f9929248a9bd 304 SUPERFAMILY SSF56176 7 195 4.36E-46 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Gferi_RS18060 03301165269a1a13d37172b34a7c1750 214 SMART SM01120 36 210 6.1E-68 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS18060 03301165269a1a13d37172b34a7c1750 214 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 14 209 4.6E-67 T 11-11-2016 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 Gferi_RS18060 03301165269a1a13d37172b34a7c1750 214 Pfam PF02734 DAK2 domain 36 209 1.5E-51 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS18060 03301165269a1a13d37172b34a7c1750 214 SUPERFAMILY SSF101473 5 210 2.35E-53 T 11-11-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS05770 f0d9d14e6e09165797dc0411e858afb4 644 SMART SM01230 157 440 2.4E-36 T 11-11-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Gferi_RS05770 f0d9d14e6e09165797dc0411e858afb4 644 SUPERFAMILY SSF55931 137 449 2.55E-55 T 11-11-2016 Gferi_RS05770 f0d9d14e6e09165797dc0411e858afb4 644 SUPERFAMILY SSF55931 476 545 2.55E-55 T 11-11-2016 Gferi_RS05770 f0d9d14e6e09165797dc0411e858afb4 644 Pfam PF00120 Glutamine synthetase, catalytic domain 261 454 2.9E-36 T 11-11-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Gferi_RS05770 f0d9d14e6e09165797dc0411e858afb4 644 Gene3D G3DSA:3.30.590.10 139 544 5.1E-70 T 11-11-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Gferi_RS02870 3f3893bef9abd2bd4ef9c8a7a504ec7c 284 Gene3D G3DSA:3.40.710.10 5 271 1.6E-81 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS02870 3f3893bef9abd2bd4ef9c8a7a504ec7c 284 SUPERFAMILY SSF56601 5 271 6.57E-60 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS02870 3f3893bef9abd2bd4ef9c8a7a504ec7c 284 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 23 254 6.6E-49 T 11-11-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Gferi_RS02870 3f3893bef9abd2bd4ef9c8a7a504ec7c 284 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 52 63 1.0E-7 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS02870 3f3893bef9abd2bd4ef9c8a7a504ec7c 284 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 102 119 1.0E-7 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS22435 48825a796cdc562ad8f6fc05bc9bb030 340 SUPERFAMILY SSF55681 20 333 5.39E-98 T 11-11-2016 Gferi_RS22435 48825a796cdc562ad8f6fc05bc9bb030 340 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 16 336 51.921 T 11-11-2016 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 Gferi_RS22435 48825a796cdc562ad8f6fc05bc9bb030 340 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 27 333 6.1E-111 T 11-11-2016 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 Gferi_RS22435 48825a796cdc562ad8f6fc05bc9bb030 340 PIRSF PIRSF001555 12 340 2.3E-163 T 11-11-2016 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 Gferi_RS22435 48825a796cdc562ad8f6fc05bc9bb030 340 Gene3D G3DSA:3.30.930.10 18 334 5.0E-158 T 11-11-2016 Gferi_RS22435 48825a796cdc562ad8f6fc05bc9bb030 340 Pfam PF03590 Aspartate-ammonia ligase 25 250 9.2E-110 T 11-11-2016 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 Gferi_RS26860 d621d6181c6a0e534814063bd52ae900 77 Hamap MF_01507 UPF0297 protein . 1 77 23.553 T 11-11-2016 IPR009309 Uncharacterised protein family UPF0297 Gferi_RS26860 d621d6181c6a0e534814063bd52ae900 77 Pfam PF06135 Bacterial protein of unknown function (DUF965) 1 75 6.1E-38 T 11-11-2016 IPR009309 Uncharacterised protein family UPF0297 Gferi_RS26860 d621d6181c6a0e534814063bd52ae900 77 PIRSF PIRSF037258 1 77 1.9E-38 T 11-11-2016 IPR009309 Uncharacterised protein family UPF0297 Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 SUPERFAMILY SSF46785 2 82 1.79E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 SUPERFAMILY SSF53850 89 297 8.14E-19 T 11-11-2016 Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 5.5E-19 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.2E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.2E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.2E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 Gene3D G3DSA:1.10.10.10 2 80 6.9E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 Gene3D G3DSA:3.40.190.10 100 205 1.1E-5 T 11-11-2016 Gferi_RS03630 6db11ac57fa826a1e384758131f48f1e 301 Pfam PF03466 LysR substrate binding domain 117 237 2.0E-7 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS14855 bb23704fb4ab68be12326b8ebb70acac 403 SUPERFAMILY SSF53686 6 384 7.33E-86 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS14855 bb23704fb4ab68be12326b8ebb70acac 403 TIGRFAM TIGR00260 thrC: threonine synthase 55 375 4.8E-64 T 11-11-2016 IPR004450 Threonine synthase-like Gferi_RS14855 bb23704fb4ab68be12326b8ebb70acac 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 71 371 1.3E-68 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS14855 bb23704fb4ab68be12326b8ebb70acac 403 Gene3D G3DSA:3.40.50.1100 196 382 6.4E-36 T 11-11-2016 Gferi_RS14855 bb23704fb4ab68be12326b8ebb70acac 403 PIRSF PIRSF038945 34 399 1.4E-88 T 11-11-2016 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 Gferi_RS14855 bb23704fb4ab68be12326b8ebb70acac 403 Gene3D G3DSA:3.40.50.1100 106 195 7.7E-23 T 11-11-2016 Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 Gene3D G3DSA:3.40.50.1220 187 352 4.3E-62 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 383 549 9.0E-46 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 328 1.3E-45 T 11-11-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 Gene3D G3DSA:3.40.50.970 359 575 4.3E-70 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 573 1.8E-214 T 11-11-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 SUPERFAMILY SSF52518 360 573 2.32E-62 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 Gene3D G3DSA:3.40.50.970 2 174 3.0E-65 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 SUPERFAMILY SSF52518 2 177 5.47E-56 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 SUPERFAMILY SSF52467 186 352 1.13E-56 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS19480 fe1766523eca7875082fb2240fd1b262 578 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 167 1.6E-52 T 11-11-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Gferi_RS01640 3a48b5e207fa482a3f06513ee3268a10 70 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 46 60 - T 11-11-2016 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 Gferi_RS01640 3a48b5e207fa482a3f06513ee3268a10 70 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 23 32 - T 11-11-2016 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 Gferi_RS01640 3a48b5e207fa482a3f06513ee3268a10 70 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 8 67 6.1E-27 T 11-11-2016 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 Gferi_RS08260 0e100cb00be1e9dc2fa1739868d69e8e 293 Gene3D G3DSA:3.60.15.10 54 288 1.4E-44 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS08260 0e100cb00be1e9dc2fa1739868d69e8e 293 SUPERFAMILY SSF56281 186 289 2.76E-35 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS08260 0e100cb00be1e9dc2fa1739868d69e8e 293 SUPERFAMILY SSF56281 55 149 2.76E-35 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS08260 0e100cb00be1e9dc2fa1739868d69e8e 293 SMART SM00849 71 273 3.2E-19 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS08260 0e100cb00be1e9dc2fa1739868d69e8e 293 ProSitePatterns PS00744 Beta-lactamases class B signature 2. 222 234 - T 11-11-2016 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 Gferi_RS08260 0e100cb00be1e9dc2fa1739868d69e8e 293 Pfam PF00753 Metallo-beta-lactamase superfamily 69 273 2.3E-10 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS01510 6da195a28fb7f9409a7b80d43d79abc3 170 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 4 168 23.762 T 11-11-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Gferi_RS01510 6da195a28fb7f9409a7b80d43d79abc3 170 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 5 167 3.0E-44 T 11-11-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Gferi_RS01510 6da195a28fb7f9409a7b80d43d79abc3 170 Pfam PF05239 PRC-barrel domain 93 167 3.5E-11 T 11-11-2016 IPR027275 PRC-barrel domain Gferi_RS01510 6da195a28fb7f9409a7b80d43d79abc3 170 Gene3D G3DSA:2.40.30.60 2 85 1.7E-16 T 11-11-2016 IPR002676 RimM protein GO:0006364 Gferi_RS01510 6da195a28fb7f9409a7b80d43d79abc3 170 Gene3D G3DSA:2.30.30.240 96 168 5.2E-21 T 11-11-2016 Gferi_RS01510 6da195a28fb7f9409a7b80d43d79abc3 170 Pfam PF01782 RimM N-terminal domain 7 85 1.9E-20 T 11-11-2016 IPR002676 RimM protein GO:0006364 Gferi_RS01510 6da195a28fb7f9409a7b80d43d79abc3 170 SUPERFAMILY SSF50346 96 168 8.24E-18 T 11-11-2016 IPR011033 PRC-barrel-like Gferi_RS01510 6da195a28fb7f9409a7b80d43d79abc3 170 SUPERFAMILY SSF50447 4 85 2.93E-18 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 Gene3D G3DSA:3.40.50.1270 183 384 5.8E-92 T 11-11-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 Gene3D G3DSA:3.40.50.1260 5 182 2.3E-75 T 11-11-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 SUPERFAMILY SSF53748 3 396 9.42E-160 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PIRSF PIRSF000724 1 397 1.3E-156 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 6 396 43.914 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 372 389 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 171 193 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 194 213 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 349 360 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 141 163 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 113 128 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 316 341 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 33 55 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 PRINTS PR00477 Phosphoglycerate kinase family signature 11 27 2.1E-94 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24465 3df1612138388da10b62b39dd8be590a 397 Pfam PF00162 Phosphoglycerate kinase 7 385 9.6E-169 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS08035 5b4ba429c85fa682e0828359a1a89d5a 388 Pfam PF01861 Protein of unknown function DUF43 116 316 3.1E-43 T 11-11-2016 IPR002723 N(4)-bis(aminopropyl)spermidine synthase, C-terminal Gferi_RS08035 5b4ba429c85fa682e0828359a1a89d5a 388 SUPERFAMILY SSF53335 188 250 2.01E-6 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS08035 5b4ba429c85fa682e0828359a1a89d5a 388 Gene3D G3DSA:1.10.10.10 1 81 3.0E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08035 5b4ba429c85fa682e0828359a1a89d5a 388 Gene3D G3DSA:3.40.50.150 114 337 4.0E-58 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 Gene3D G3DSA:3.30.1390.10 50 122 7.6E-35 T 11-11-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 Gene3D G3DSA:1.20.5.710 1 48 8.3E-26 T 11-11-2016 Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 SUPERFAMILY SSF48300 1 58 1.23E-17 T 11-11-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 SUPERFAMILY SSF54736 51 122 1.31E-25 T 11-11-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 2 122 1.4E-51 T 11-11-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 1.1E-31 T 11-11-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 2 48 2.1E-23 T 11-11-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 122 1.0E-23 T 11-11-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17340 762f1c58ae3bc54fc9f51aa5e3ee72f9 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 122 25.582 T 11-11-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02625 4d9db177554ce4f6a96ab391956b7da9 212 SUPERFAMILY SSF55469 1 211 1.7E-43 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS02625 4d9db177554ce4f6a96ab391956b7da9 212 Gene3D G3DSA:3.40.109.10 1 211 3.7E-46 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS02625 4d9db177554ce4f6a96ab391956b7da9 212 Pfam PF00881 Nitroreductase family 7 189 1.4E-36 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS02440 c4355ab700888d7fd2e188ee8aad2195 61 Gene3D G3DSA:1.10.3910.10 2 61 8.4E-4 T 11-11-2016 IPR015077 Domain of unknown function DUF1858 Gferi_RS02440 c4355ab700888d7fd2e188ee8aad2195 61 SUPERFAMILY SSF140683 1 61 2.35E-17 T 11-11-2016 Gferi_RS02440 c4355ab700888d7fd2e188ee8aad2195 61 Pfam PF08984 Domain of unknown function (DUF1858) 3 56 1.5E-20 T 11-11-2016 IPR015077 Domain of unknown function DUF1858 Gferi_RS02440 c4355ab700888d7fd2e188ee8aad2195 61 TIGRFAM TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain 3 60 1.5E-25 T 11-11-2016 IPR023883 Conserved hypothetical protein CHP03980, redox-disulphide Gferi_RS20760 07b703844fd08619f0059fdadc8f3407 225 Pfam PF00899 ThiF family 4 223 1.7E-46 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Gferi_RS20760 07b703844fd08619f0059fdadc8f3407 225 SUPERFAMILY SSF69572 2 217 6.8E-64 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Gferi_RS20760 07b703844fd08619f0059fdadc8f3407 225 Gene3D G3DSA:3.40.50.720 2 221 2.0E-54 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00750 bfe981f2cf76ff70dc8365973f7da65a 211 Gene3D G3DSA:3.90.550.10 1 111 2.3E-15 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS00750 bfe981f2cf76ff70dc8365973f7da65a 211 SUPERFAMILY SSF53448 3 194 2.93E-33 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS00750 bfe981f2cf76ff70dc8365973f7da65a 211 Pfam PF00535 Glycosyl transferase family 2 5 126 5.8E-18 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 SUPERFAMILY SSF52540 3 184 1.41E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 Pfam PF00005 ABC transporter 305 429 1.1E-20 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 Pfam PF00005 ABC transporter 23 69 4.2E-8 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 Gene3D G3DSA:3.40.50.300 30 172 1.6E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 Pfam PF12848 ABC transporter 165 242 8.7E-6 T 11-11-2016 IPR032781 ABC-transporter extension domain Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 Gene3D G3DSA:3.40.50.300 239 272 2.7E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 Gene3D G3DSA:3.40.50.300 286 493 5.5E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 SUPERFAMILY SSF52540 278 488 7.08E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 SMART SM00382 313 474 4.9E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 SMART SM00382 28 308 6.0E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 ProSitePatterns PS00211 ABC transporters family signature. 98 112 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22785 0eca511c0cd3456730900f711b24fdbb 548 ProSitePatterns PS00211 ABC transporters family signature. 401 415 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS03570 8c436bc9e6549b5874415b1aa786c7db 173 Gene3D G3DSA:1.10.3210.10 24 171 1.0E-17 T 11-11-2016 IPR006674 HD domain Gferi_RS03570 8c436bc9e6549b5874415b1aa786c7db 173 SUPERFAMILY SSF109604 36 152 9.68E-15 T 11-11-2016 Gferi_RS14875 8e66d8669a7d7779f0aae768ea4c1844 744 Pfam PF13538 UvrD-like helicase C-terminal domain 686 733 6.6E-13 T 11-11-2016 IPR027785 UvrD-like helicase C-terminal domain Gferi_RS14875 8e66d8669a7d7779f0aae768ea4c1844 744 SUPERFAMILY SSF52540 469 738 6.17E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14875 8e66d8669a7d7779f0aae768ea4c1844 744 SUPERFAMILY SSF52540 201 361 6.17E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14875 8e66d8669a7d7779f0aae768ea4c1844 744 Pfam PF13245 Part of AAA domain 216 281 1.3E-9 T 11-11-2016 Gferi_RS14875 8e66d8669a7d7779f0aae768ea4c1844 744 Pfam PF00580 UvrD/REP helicase N-terminal domain 433 557 1.0E-5 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 Gferi_RS14875 8e66d8669a7d7779f0aae768ea4c1844 744 Gene3D G3DSA:3.40.50.300 201 310 1.9E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14875 8e66d8669a7d7779f0aae768ea4c1844 744 Gene3D G3DSA:3.40.50.300 499 588 1.9E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14875 8e66d8669a7d7779f0aae768ea4c1844 744 Gene3D G3DSA:3.40.50.300 589 743 4.4E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00680 8cb9114494b6cfb11c00318ac3886aa1 419 SUPERFAMILY SSF63411 226 415 9.25E-48 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS00680 8cb9114494b6cfb11c00318ac3886aa1 419 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 33 56 - T 11-11-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 Gferi_RS00680 8cb9114494b6cfb11c00318ac3886aa1 419 Gene3D G3DSA:3.30.830.10 228 413 8.2E-52 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 Gferi_RS00680 8cb9114494b6cfb11c00318ac3886aa1 419 Pfam PF00675 Insulinase (Peptidase family M16) 13 159 1.5E-42 T 11-11-2016 IPR011765 Peptidase M16, N-terminal Gferi_RS00680 8cb9114494b6cfb11c00318ac3886aa1 419 SUPERFAMILY SSF63411 3 210 4.37E-58 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS00680 8cb9114494b6cfb11c00318ac3886aa1 419 Gene3D G3DSA:3.30.830.10 4 212 9.5E-54 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 Gferi_RS00680 8cb9114494b6cfb11c00318ac3886aa1 419 Pfam PF05193 Peptidase M16 inactive domain 166 340 8.4E-40 T 11-11-2016 IPR007863 Peptidase M16, C-terminal Gferi_RS25210 5cbed11ae3023c51883a4560e28fd7a8 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 319 2.9E-28 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS25210 5cbed11ae3023c51883a4560e28fd7a8 326 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS25210 5cbed11ae3023c51883a4560e28fd7a8 326 Gene3D G3DSA:3.40.50.300 4 257 4.1E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25210 5cbed11ae3023c51883a4560e28fd7a8 326 SMART SM00382 34 240 2.6E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25210 5cbed11ae3023c51883a4560e28fd7a8 326 Pfam PF00005 ABC transporter 25 183 5.5E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25210 5cbed11ae3023c51883a4560e28fd7a8 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 299 4.3E-19 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS25210 5cbed11ae3023c51883a4560e28fd7a8 326 SUPERFAMILY SSF52540 5 254 1.62E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26080 5541272d4b04ca0ee2d7b604021159fe 329 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 5 170 1.7E-55 T 11-11-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS26080 5541272d4b04ca0ee2d7b604021159fe 329 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 10 148 2.0E-42 T 11-11-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS26080 5541272d4b04ca0ee2d7b604021159fe 329 Gene3D G3DSA:1.20.1200.10 13 176 6.2E-56 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS26080 5541272d4b04ca0ee2d7b604021159fe 329 PIRSF PIRSF036411 2 327 3.3E-72 T 11-11-2016 IPR009221 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, bifunctional PduO Gferi_RS26080 5541272d4b04ca0ee2d7b604021159fe 329 SUPERFAMILY SSF89028 3 176 1.26E-55 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS26080 5541272d4b04ca0ee2d7b604021159fe 329 Pfam PF03928 Haem-degrading 194 320 6.4E-30 T 11-11-2016 IPR005624 Haem-degrading Gferi_RS26080 5541272d4b04ca0ee2d7b604021159fe 329 SUPERFAMILY SSF143744 192 323 9.42E-41 T 11-11-2016 Gferi_RS26080 5541272d4b04ca0ee2d7b604021159fe 329 Pfam PF01923 Cobalamin adenosyltransferase 4 167 4.3E-55 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS00445 0888a2fe5f45b38852bd920104364bae 351 Gene3D G3DSA:3.40.50.300 101 339 2.8E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00445 0888a2fe5f45b38852bd920104364bae 351 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Gferi_RS00445 0888a2fe5f45b38852bd920104364bae 351 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 341 7.8E-148 T 11-11-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 Gferi_RS00445 0888a2fe5f45b38852bd920104364bae 351 SUPERFAMILY SSF52540 6 336 6.15E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00445 0888a2fe5f45b38852bd920104364bae 351 Pfam PF00437 Type II/IV secretion system protein 11 267 3.4E-44 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Gferi_RS14335 39bb4f2ee126cd93ef563f27af8f3d08 101 SUPERFAMILY SSF46767 2 85 4.32E-23 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS14335 39bb4f2ee126cd93ef563f27af8f3d08 101 Gene3D G3DSA:1.10.10.10 2 86 1.3E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14335 39bb4f2ee126cd93ef563f27af8f3d08 101 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 2 81 6.2E-13 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS14335 39bb4f2ee126cd93ef563f27af8f3d08 101 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 3 84 6.4E-22 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS07865 a341c58eb474ab77a2cf797a3b29f8c8 356 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 352 2.9E-144 T 11-11-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Gferi_RS07865 a341c58eb474ab77a2cf797a3b29f8c8 356 PIRSF PIRSF016049 1 356 7.2E-116 T 11-11-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Gferi_RS07865 a341c58eb474ab77a2cf797a3b29f8c8 356 SUPERFAMILY SSF51658 1 351 6.84E-84 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS07865 a341c58eb474ab77a2cf797a3b29f8c8 356 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 356 163.241 T 11-11-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Gferi_RS07865 a341c58eb474ab77a2cf797a3b29f8c8 356 Gene3D G3DSA:3.20.20.150 1 354 5.1E-142 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS07865 a341c58eb474ab77a2cf797a3b29f8c8 356 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 355 1.6E-111 T 11-11-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 SUPERFAMILY SSF52540 12 231 2.13E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 Pfam PF00005 ABC transporter 277 429 4.0E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 Pfam PF00005 ABC transporter 27 170 2.5E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 Gene3D G3DSA:3.40.50.300 276 491 1.3E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 Gene3D G3DSA:3.40.50.300 9 231 4.6E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 SUPERFAMILY SSF52540 276 488 3.61E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 SMART SM00382 285 480 4.4E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19750 0f91a9b476509d1b30a41b7d512515a1 513 SMART SM00382 36 218 4.1E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 TIGRFAM TIGR01529 argR_whole: arginine repressor 4 148 8.1E-47 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 SUPERFAMILY SSF55252 79 147 3.79E-18 T 11-11-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 Pfam PF01316 Arginine repressor, DNA binding domain 2 67 3.1E-25 T 11-11-2016 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 Pfam PF02863 Arginine repressor, C-terminal domain 79 146 1.4E-27 T 11-11-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 Gene3D G3DSA:3.30.1360.40 72 148 5.9E-27 T 11-11-2016 IPR024946 Arginine repressor C-terminal-like domain Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 86 142 4.0E-10 T 11-11-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 Gene3D G3DSA:1.10.10.10 8 64 3.3E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 PRINTS PR01467 Bacterial arginine repressor signature 20 33 9.3E-25 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 PRINTS PR01467 Bacterial arginine repressor signature 36 51 9.3E-25 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 PRINTS PR01467 Bacterial arginine repressor signature 87 100 9.3E-25 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 PRINTS PR01467 Bacterial arginine repressor signature 117 132 9.3E-25 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 SUPERFAMILY SSF46785 2 75 9.09E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00235 9a3cab15337db112600d9557dafa5432 149 Hamap MF_00173 Arginine repressor [argR]. 1 149 61.046 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 Gferi_RS20995 e578562255898ba858f491d589d919ff 212 Gene3D G3DSA:1.10.10.10 159 211 4.2E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20995 e578562255898ba858f491d589d919ff 212 Pfam PF00027 Cyclic nucleotide-binding domain 26 112 4.5E-15 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS20995 e578562255898ba858f491d589d919ff 212 SUPERFAMILY SSF51206 19 138 1.05E-23 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS20995 e578562255898ba858f491d589d919ff 212 Gene3D G3DSA:2.60.120.10 17 140 1.4E-22 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS20995 e578562255898ba858f491d589d919ff 212 SMART SM00100 7 128 5.8E-7 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS14725 42467f55d9f1e6c1a4048e814c323dfd 259 Pfam PF01695 IstB-like ATP binding protein 53 229 4.7E-63 T 11-11-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 Gferi_RS14725 42467f55d9f1e6c1a4048e814c323dfd 259 PIRSF PIRSF003073 1 250 4.3E-81 T 11-11-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Gferi_RS14725 42467f55d9f1e6c1a4048e814c323dfd 259 SUPERFAMILY SSF52540 65 238 1.05E-25 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14725 42467f55d9f1e6c1a4048e814c323dfd 259 Gene3D G3DSA:3.40.50.300 55 231 1.2E-28 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14725 42467f55d9f1e6c1a4048e814c323dfd 259 SMART SM00382 98 231 3.0E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 SUPERFAMILY SSF52833 5 95 4.47E-24 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 SUPERFAMILY SSF140490 436 538 3.92E-40 T 11-11-2016 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 SMART SM00928 440 485 6.2E-25 T 11-11-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 SUPERFAMILY SSF142019 111 351 1.7E-95 T 11-11-2016 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 SUPERFAMILY SSF142984 352 435 8.37E-26 T 11-11-2016 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 441 525 5.9E-34 T 11-11-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 Pfam PF10531 SLBB domain 356 402 7.2E-8 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 Gene3D G3DSA:3.30.70.20 543 593 1.9E-14 T 11-11-2016 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 6 80 2.7E-7 T 11-11-2016 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 578 589 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 Gene3D G3DSA:3.40.30.10 5 97 2.8E-32 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 159 330 1.3E-46 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 453 464 - T 11-11-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 SUPERFAMILY SSF54862 542 594 1.54E-15 T 11-11-2016 Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 Pfam PF13237 4Fe-4S dicluster domain 544 589 1.4E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS20710 da01a05ebb722df5e46fc15adbc3f834 596 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 548 559 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS13265 c54f921ec9b237a75e21c6f577e31f71 44 Pfam PF00468 Ribosomal protein L34 1 44 1.8E-22 T 11-11-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13265 c54f921ec9b237a75e21c6f577e31f71 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 4.6E-19 T 11-11-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13265 c54f921ec9b237a75e21c6f577e31f71 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 30 3.0E-6 T 11-11-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13265 c54f921ec9b237a75e21c6f577e31f71 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.139 T 11-11-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13265 c54f921ec9b237a75e21c6f577e31f71 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 11-11-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 Gene3D G3DSA:3.40.190.10 179 251 1.5E-6 T 11-11-2016 Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 Gene3D G3DSA:3.40.190.10 83 178 1.7E-13 T 11-11-2016 Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 Pfam PF03466 LysR substrate binding domain 88 288 3.9E-27 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 SUPERFAMILY SSF46785 6 111 6.17E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.2E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.2E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.2E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 1.3E-11 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 SUPERFAMILY SSF53850 88 289 1.74E-26 T 11-11-2016 Gferi_RS25120 6d997651a07110763d89c0fea9269d2d 289 Gene3D G3DSA:1.10.10.10 7 82 3.2E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 SMART SM00955 235 565 6.6E-178 T 11-11-2016 Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 SUPERFAMILY SSF50249 113 212 3.13E-23 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 SUPERFAMILY SSF50249 196 610 1.48E-145 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 Pfam PF08206 Ribonuclease B OB domain 60 119 3.0E-17 T 11-11-2016 IPR013223 Ribonuclease B, N-terminal OB domain Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 Pfam PF08206 Ribonuclease B OB domain 133 188 1.6E-9 T 11-11-2016 IPR013223 Ribonuclease B, N-terminal OB domain Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 Gene3D G3DSA:2.40.50.140 615 691 1.5E-20 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 Pfam PF00773 RNB domain 235 564 1.1E-117 T 11-11-2016 Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 Pfam PF00575 S1 RNA binding domain 614 691 1.1E-15 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 SUPERFAMILY SSF50249 40 122 4.22E-18 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 SMART SM00316 612 694 3.5E-12 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 SUPERFAMILY SSF50249 615 693 9.61E-21 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 Hamap MF_01895 Ribonuclease R [rnr]. 12 694 58.957 T 11-11-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 TIGRFAM TIGR02063 RNase_R: ribonuclease R 2 693 7.0E-273 T 11-11-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 44 693 1.8E-219 T 11-11-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 SMART SM00357 59 120 9.0E-8 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 Gferi_RS24495 0b8f6c93011defd042b5b7dd8841321b 694 SMART SM00357 125 189 1.5E-4 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 Gene3D G3DSA:3.30.63.10 50 86 6.3E-26 T 11-11-2016 Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 Hamap MF_00328 Guanylate kinase [gmk]. 3 186 36.935 T 11-11-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 Pfam PF00625 Guanylate kinase 7 185 6.4E-50 T 11-11-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 SMART SM00072 4 186 5.7E-59 T 11-11-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 5 183 3.4E-74 T 11-11-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 Gene3D G3DSA:3.40.50.300 87 193 2.5E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 SUPERFAMILY SSF52540 3 189 1.81E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 ProSitePatterns PS00856 Guanylate kinase-like signature. 39 56 - T 11-11-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 Gferi_RS01730 272666af8b0029d53ee88194242ced51 206 Gene3D G3DSA:3.40.50.300 2 49 3.7E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24770 c0631e4e7204d1021f1c87ed74284eb8 207 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 3 148 4.0E-10 T 11-11-2016 IPR018958 SMI1/KNR4-like domain Gferi_RS24770 c0631e4e7204d1021f1c87ed74284eb8 207 SUPERFAMILY SSF160631 7 31 6.8E-10 T 11-11-2016 Gferi_RS24770 c0631e4e7204d1021f1c87ed74284eb8 207 SUPERFAMILY SSF160631 69 159 6.8E-10 T 11-11-2016 Gferi_RS24770 c0631e4e7204d1021f1c87ed74284eb8 207 Gene3D G3DSA:3.40.1580.10 7 160 9.8E-9 T 11-11-2016 IPR018958 SMI1/KNR4-like domain Gferi_RS25435 1e762d30d7ba6ce7861fcf99509c1086 160 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 132 3.5E-45 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS25435 1e762d30d7ba6ce7861fcf99509c1086 160 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 88 99 - T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS25435 1e762d30d7ba6ce7861fcf99509c1086 160 Gene3D G3DSA:3.30.70.560 3 154 7.9E-55 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS25435 1e762d30d7ba6ce7861fcf99509c1086 160 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 132 7.8E-40 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS25435 1e762d30d7ba6ce7861fcf99509c1086 160 SUPERFAMILY SSF55083 1 153 2.22E-52 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS08390 59efa752d7b3661a2f4f63203badfabd 305 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 9 305 129.497 T 11-11-2016 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 Gferi_RS08390 59efa752d7b3661a2f4f63203badfabd 305 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 16 288 1.0E-87 T 11-11-2016 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 Gferi_RS08390 59efa752d7b3661a2f4f63203badfabd 305 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 17 288 4.9E-80 T 11-11-2016 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SMART SM00028 912 945 130.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SMART SM00028 872 905 33.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SMART SM00028 787 820 160.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SMART SM00028 832 865 2.6 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 Pfam PF13191 AAA ATPase domain 243 419 9.6E-20 T 11-11-2016 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 Gene3D G3DSA:3.40.50.300 361 424 2.2E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 Gene3D G3DSA:3.40.50.300 466 478 2.2E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 Gene3D G3DSA:3.40.50.300 237 302 2.2E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 Pfam PF03704 Bacterial transcriptional activator domain 102 227 1.0E-15 T 11-11-2016 IPR005158 Bacterial transcriptional activator domain Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SUPERFAMILY SSF52540 241 508 7.64E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SUPERFAMILY SSF48452 704 824 3.51E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SUPERFAMILY SSF48452 107 228 1.52E-15 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 Gene3D G3DSA:1.25.40.10 154 236 6.7E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 Gene3D G3DSA:1.25.40.10 601 640 6.7E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SUPERFAMILY SSF48452 830 1001 2.15E-13 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 Gene3D G3DSA:1.25.40.10 799 999 1.5E-14 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10295 7bcb39fe5b159321d7923da36d615326 1012 SMART SM01043 97 229 6.4E-20 T 11-11-2016 IPR005158 Bacterial transcriptional activator domain Gferi_RS11145 fcd4692d4debc6769c30975d5773cc75 219 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 46 54 - T 11-11-2016 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 Gferi_RS11145 fcd4692d4debc6769c30975d5773cc75 219 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 7 210 1.2E-94 T 11-11-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Gferi_RS11145 fcd4692d4debc6769c30975d5773cc75 219 Pfam PF01144 Coenzyme A transferase 10 203 3.7E-41 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS11145 fcd4692d4debc6769c30975d5773cc75 219 SMART SM00882 8 203 1.8E-68 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS11145 fcd4692d4debc6769c30975d5773cc75 219 SUPERFAMILY SSF100950 6 218 1.2E-70 T 11-11-2016 Gferi_RS11145 fcd4692d4debc6769c30975d5773cc75 219 Gene3D G3DSA:3.40.810.20 7 215 5.5E-87 T 11-11-2016 Gferi_RS06840 1edc9dd4d20938cec0407ec7d3d9912d 803 Gene3D G3DSA:2.70.98.40 1 334 1.0E-59 T 11-11-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Gferi_RS06840 1edc9dd4d20938cec0407ec7d3d9912d 803 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 305 729 2.2E-134 T 11-11-2016 IPR033432 Glycosyl hydrolase 36, catalytic domain Gferi_RS06840 1edc9dd4d20938cec0407ec7d3d9912d 803 SUPERFAMILY SSF74650 1 276 2.04E-33 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Gferi_RS06840 1edc9dd4d20938cec0407ec7d3d9912d 803 Gene3D G3DSA:1.50.10.10 359 666 1.0E-6 T 11-11-2016 IPR012341 Six-hairpin glycosidase GO:0003824 Gferi_RS06840 1edc9dd4d20938cec0407ec7d3d9912d 803 SUPERFAMILY SSF48208 286 803 1.21E-95 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 Gferi_RS06840 1edc9dd4d20938cec0407ec7d3d9912d 803 Gene3D G3DSA:2.60.420.10 720 786 5.7E-11 T 11-11-2016 Gferi_RS06840 1edc9dd4d20938cec0407ec7d3d9912d 803 Pfam PF06165 Glycosyltransferase family 36 21 274 8.2E-49 T 11-11-2016 IPR010383 Glycosyl hydrolase 94 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 SUPERFAMILY SSF116726 131 206 1.57E-13 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 Gene3D G3DSA:3.40.50.720 1 146 6.0E-38 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 Pfam PF02080 TrkA-C domain 150 205 2.4E-12 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 Pfam PF02254 TrkA-N domain 3 118 2.3E-24 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 Gene3D G3DSA:3.30.70.1450 150 204 8.6E-9 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 SUPERFAMILY SSF51735 1 146 5.79E-31 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 2.8E-11 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 2.8E-11 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 2.8E-11 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 2.8E-11 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS05405 19beb4ff63626b8c9a1f4f4390ee0c3d 221 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.8E-11 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 SUPERFAMILY SSF56300 36 320 3.26E-85 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 Gene3D G3DSA:3.90.780.10 323 513 1.9E-62 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 SUPERFAMILY SSF54106 569 614 1.19E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 Gene3D G3DSA:3.60.21.10 35 321 8.7E-93 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 Pfam PF00149 Calcineurin-like phosphoesterase 43 248 3.2E-14 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 Gene3D G3DSA:3.10.350.10 568 614 4.8E-17 T 11-11-2016 IPR018392 LysM domain Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 SUPERFAMILY SSF55816 320 513 1.05E-61 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 Pfam PF02872 5'-nucleotidase, C-terminal domain 323 476 7.6E-49 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 ProSitePatterns PS00785 5'-nucleotidase signature 1. 41 53 - T 11-11-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 Pfam PF01476 LysM domain 570 613 2.2E-17 T 11-11-2016 IPR018392 LysM domain Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 SMART SM00257 569 613 4.9E-16 T 11-11-2016 IPR018392 LysM domain Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 PRINTS PR01607 Apyrase family signature 377 400 8.1E-36 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 PRINTS PR01607 Apyrase family signature 207 224 8.1E-36 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 PRINTS PR01607 Apyrase family signature 259 279 8.1E-36 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 PRINTS PR01607 Apyrase family signature 39 57 8.1E-36 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 PRINTS PR01607 Apyrase family signature 450 469 8.1E-36 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS17655 91a4bd55c5ffbe717a0c277e07d02726 615 PRINTS PR01607 Apyrase family signature 231 254 8.1E-36 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 SUPERFAMILY SSF53187 182 493 4.08E-116 T 11-11-2016 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 499 36.562 T 11-11-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 347 354 - T 11-11-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 Gene3D G3DSA:3.40.220.10 1 159 1.8E-30 T 11-11-2016 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 185 490 1.2E-118 T 11-11-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 PRINTS PR00481 Cytosol aminopeptidase signature 284 305 5.4E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 PRINTS PR00481 Cytosol aminopeptidase signature 371 386 5.4E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 PRINTS PR00481 Cytosol aminopeptidase signature 262 279 5.4E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 PRINTS PR00481 Cytosol aminopeptidase signature 343 363 5.4E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 PRINTS PR00481 Cytosol aminopeptidase signature 321 342 5.4E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 SUPERFAMILY SSF52949 1 184 5.0E-31 T 11-11-2016 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 Gene3D G3DSA:3.40.630.10 171 497 5.7E-132 T 11-11-2016 Gferi_RS16680 69d652c0bf438c72337a0b905e307886 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 28 147 4.6E-20 T 11-11-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 SMART SM00382 622 821 1.1E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 TIGRFAM TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein 149 831 3.4E-234 T 11-11-2016 IPR022515 NHPM bacteriocin system ABC transporter, ATP-binding protein Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 Pfam PF00664 ABC transporter transmembrane region 285 551 1.7E-17 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 Gene3D G3DSA:3.40.50.300 595 825 2.0E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 ProSitePatterns PS00211 ABC transporters family signature. 734 748 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 SUPERFAMILY SSF90123 277 571 7.98E-37 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 SUPERFAMILY SSF52540 586 830 6.55E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 Pfam PF00005 ABC transporter 613 762 3.7E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS04890 e22f24b80def5f89944045a468e5f087 832 Gene3D G3DSA:1.20.1560.10 277 566 8.0E-30 T 11-11-2016 Gferi_RS24205 a0e249e3f224c7b348897816a0335562 195 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 11-11-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 Gferi_RS24205 a0e249e3f224c7b348897816a0335562 195 Gene3D G3DSA:3.40.50.1240 1 194 8.7E-63 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS24205 a0e249e3f224c7b348897816a0335562 195 SUPERFAMILY SSF53254 1 191 4.19E-61 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS24205 a0e249e3f224c7b348897816a0335562 195 PIRSF PIRSF000709 2 186 8.0E-26 T 11-11-2016 Gferi_RS24205 a0e249e3f224c7b348897816a0335562 195 SMART SM00855 2 156 4.8E-23 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 Gferi_RS24205 a0e249e3f224c7b348897816a0335562 195 TIGRFAM TIGR03162 ribazole_cobC: alpha-ribazole phosphatase 3 180 1.4E-53 T 11-11-2016 IPR017578 Alpha-ribazole phosphatase, CobC GO:0009236|GO:0043755 KEGG: 00860+3.1.3.73|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS24205 a0e249e3f224c7b348897816a0335562 195 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 194 1.5E-60 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 Gferi_RS06285 9c201c159e4d028f6a168bedfed22efb 146 ProDom PD053081 COIL MM0410 AF2262 COILED 91 143 1.0E-16 T 11-11-2016 Gferi_RS22410 4c10e62b2381a22e94bfe0a466ec78be 239 Pfam PF00072 Response regulator receiver domain 4 112 1.0E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22410 4c10e62b2381a22e94bfe0a466ec78be 239 Gene3D G3DSA:1.10.10.10 128 229 2.2E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22410 4c10e62b2381a22e94bfe0a466ec78be 239 SUPERFAMILY SSF46894 127 227 2.52E-29 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS22410 4c10e62b2381a22e94bfe0a466ec78be 239 SMART SM00862 151 226 6.8E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS22410 4c10e62b2381a22e94bfe0a466ec78be 239 SUPERFAMILY SSF52172 3 121 1.99E-35 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS22410 4c10e62b2381a22e94bfe0a466ec78be 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 2.7E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS22410 4c10e62b2381a22e94bfe0a466ec78be 239 Gene3D G3DSA:3.40.50.2300 3 119 1.2E-33 T 11-11-2016 Gferi_RS22410 4c10e62b2381a22e94bfe0a466ec78be 239 SMART SM00448 2 111 1.3E-35 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Pfam PF00158 Sigma-54 interaction domain 279 443 7.8E-67 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 SUPERFAMILY SSF52540 279 520 7.85E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Pfam PF00571 CBS domain 84 131 5.2E-9 T 11-11-2016 IPR000644 CBS domain Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Pfam PF00571 CBS domain 11 66 3.6E-6 T 11-11-2016 IPR000644 CBS domain Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 548 565 3.8E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 565 585 3.8E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Gene3D G3DSA:1.10.8.60 450 522 1.3E-23 T 11-11-2016 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 137 246 2.3E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Pfam PF02954 Bacterial regulatory protein, Fis family 549 580 4.3E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 490 499 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Gene3D G3DSA:1.10.10.60 523 584 1.8E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 SMART SM00116 85 132 8.2E-9 T 11-11-2016 IPR000644 CBS domain Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 SMART SM00116 18 66 0.024 T 11-11-2016 IPR000644 CBS domain Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 SUPERFAMILY SSF46689 490 584 2.01E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 SMART SM00091 140 206 1.4E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 SUPERFAMILY SSF55785 134 241 1.41E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Gene3D G3DSA:3.40.50.300 274 449 6.0E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 SUPERFAMILY SSF54631 6 130 7.83E-24 T 11-11-2016 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 301 314 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Pfam PF08448 PAS fold 146 244 6.4E-11 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 SMART SM00382 297 444 1.2E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Gene3D G3DSA:3.10.580.10 10 131 8.1E-22 T 11-11-2016 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 Gene3D G3DSA:3.30.450.20 139 241 6.0E-15 T 11-11-2016 Gferi_RS10145 074e3cc6dc59b76cdba1b7855ecb73a2 588 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 363 378 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS19330 cdfb14511a72bdd4ada75f8b0db3c11c 200 SUPERFAMILY SSF46689 13 76 5.67E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19330 cdfb14511a72bdd4ada75f8b0db3c11c 200 SUPERFAMILY SSF48498 85 194 5.13E-13 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS19330 cdfb14511a72bdd4ada75f8b0db3c11c 200 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 63 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS19330 cdfb14511a72bdd4ada75f8b0db3c11c 200 Gene3D G3DSA:1.10.357.10 11 191 8.9E-30 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS19330 cdfb14511a72bdd4ada75f8b0db3c11c 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 3.4E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS19330 cdfb14511a72bdd4ada75f8b0db3c11c 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 3.4E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS19330 cdfb14511a72bdd4ada75f8b0db3c11c 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 64 8.1E-14 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS12320 71b39dcbde11437f3c51e8d99db1b13a 112 SUPERFAMILY SSF82607 17 111 7.06E-34 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family Gferi_RS12320 71b39dcbde11437f3c51e8d99db1b13a 112 PIRSF PIRSF004555 9 112 6.5E-41 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family Gferi_RS12320 71b39dcbde11437f3c51e8d99db1b13a 112 Pfam PF02575 YbaB/EbfC DNA-binding family 17 107 4.4E-36 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family Gferi_RS12320 71b39dcbde11437f3c51e8d99db1b13a 112 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 11 105 23.423 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family Gferi_RS12320 71b39dcbde11437f3c51e8d99db1b13a 112 Gene3D G3DSA:3.30.1310.10 8 112 2.3E-43 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family Gferi_RS12320 71b39dcbde11437f3c51e8d99db1b13a 112 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 10 111 8.3E-31 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 Gene3D G3DSA:2.60.120.10 11 138 7.1E-24 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 Pfam PF12833 Helix-turn-helix domain 465 543 1.1E-17 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 Pfam PF10114 Sensory domain found in PocR 129 279 3.7E-18 T 11-11-2016 IPR018771 PocR domain Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 SUPERFAMILY SSF46689 495 544 5.38E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 SUPERFAMILY SSF51182 15 109 1.27E-20 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 Gene3D G3DSA:1.10.10.60 437 495 1.0E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 511 526 2.8E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 526 542 2.8E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 Gene3D G3DSA:1.10.10.60 496 544 1.8E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 SMART SM00342 459 542 4.0E-23 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS14415 409bcda9b4786b9ae8762deda5c1dc8d 547 Pfam PF07883 Cupin domain 39 107 1.1E-12 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS03450 304e61109922ce51a607ed300de8b15e 570 Gene3D G3DSA:1.10.3720.10 11 265 1.3E-43 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS03450 304e61109922ce51a607ed300de8b15e 570 Gene3D G3DSA:1.10.3720.10 290 540 2.0E-35 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS03450 304e61109922ce51a607ed300de8b15e 570 SUPERFAMILY SSF161098 291 537 1.83E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS03450 304e61109922ce51a607ed300de8b15e 570 SUPERFAMILY SSF161098 10 280 3.74E-50 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS03450 304e61109922ce51a607ed300de8b15e 570 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 261 8.5E-16 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS03450 304e61109922ce51a607ed300de8b15e 570 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 367 547 1.1E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 464 2.4E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 427 444 2.4E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 Gene3D G3DSA:3.30.450.20 3 107 4.8E-9 T 11-11-2016 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 SUPERFAMILY SSF55785 10 115 2.97E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 Pfam PF02954 Bacterial regulatory protein, Fis family 421 460 1.9E-12 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 SMART SM00382 164 306 1.8E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 Gene3D G3DSA:1.10.8.60 316 390 3.7E-22 T 11-11-2016 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 SUPERFAMILY SSF52540 143 388 2.02E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 356 365 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 SUPERFAMILY SSF46689 356 463 1.0E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 2 117 5.2E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 Pfam PF00158 Sigma-54 interaction domain 144 310 9.0E-62 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 SMART SM00091 2 68 1.6E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 229 244 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 Gene3D G3DSA:3.40.50.300 140 313 7.8E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25325 93b7fdc0e9e9d00ae7d25343b068078c 466 Gene3D G3DSA:1.10.10.60 419 460 5.7E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22265 a1325fbbbbde68a165816b2e08d20ffa 193 Pfam PF09605 Hypothetical bacterial integral membrane protein (Trep_Strep) 8 189 3.6E-64 T 11-11-2016 IPR011733 Conserved hypothetical CHP02185, integral membrane Gferi_RS22265 a1325fbbbbde68a165816b2e08d20ffa 193 TIGRFAM TIGR02185 Trep_Strep: putative ECF transporter S component, Trep_Strep family 5 188 9.8E-41 T 11-11-2016 IPR011733 Conserved hypothetical CHP02185, integral membrane Gferi_RS16040 484f5c637948180471a28b05913218b3 408 SUPERFAMILY SSF52467 271 390 2.05E-42 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS16040 484f5c637948180471a28b05913218b3 408 SUPERFAMILY SSF54862 15 56 2.1E-5 T 11-11-2016 Gferi_RS16040 484f5c637948180471a28b05913218b3 408 Pfam PF01012 Electron transfer flavoprotein domain 74 240 1.0E-39 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS16040 484f5c637948180471a28b05913218b3 408 SUPERFAMILY SSF52402 71 264 1.26E-51 T 11-11-2016 Gferi_RS16040 484f5c637948180471a28b05913218b3 408 Gene3D G3DSA:3.40.50.620 71 255 2.8E-68 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS16040 484f5c637948180471a28b05913218b3 408 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 271 353 7.7E-30 T 11-11-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Gferi_RS16040 484f5c637948180471a28b05913218b3 408 Gene3D G3DSA:3.40.50.1220 264 391 8.6E-48 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS16040 484f5c637948180471a28b05913218b3 408 SMART SM00893 72 251 1.1E-39 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 576 588 - T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 Pfam PF02378 Phosphotransferase system, EIIC 17 320 1.7E-60 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 385 467 3.8E-15 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 514 634 6.5E-46 T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 Gene3D G3DSA:3.30.1360.60 405 481 1.9E-24 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 SUPERFAMILY SSF51261 510 657 6.8E-53 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 514 637 6.0E-49 T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 SUPERFAMILY SSF55604 408 481 1.57E-18 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 Gene3D G3DSA:2.70.70.10 512 658 6.0E-58 T 11-11-2016 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 Pfam PF00367 phosphotransferase system, EIIB 410 442 2.6E-11 T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Gferi_RS25010 bc78349694ed56701ec26cbdbe908f53 660 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 420 437 - T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Gferi_RS19195 53301b4f00c2cf4bc6ac3e53c045f150 466 SUPERFAMILY SSF102114 82 308 1.31E-44 T 11-11-2016 Gferi_RS19195 53301b4f00c2cf4bc6ac3e53c045f150 466 Gene3D G3DSA:3.20.20.70 80 350 1.1E-58 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS19195 53301b4f00c2cf4bc6ac3e53c045f150 466 SMART SM00729 93 300 0.0016 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS19195 53301b4f00c2cf4bc6ac3e53c045f150 466 Pfam PF04055 Radical SAM superfamily 97 257 6.2E-19 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 442 523 7.7E-26 T 11-11-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 Pfam PF10531 SLBB domain 354 403 6.9E-7 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 Gene3D G3DSA:3.40.30.10 5 101 6.4E-30 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 SUPERFAMILY SSF140490 436 533 4.18E-30 T 11-11-2016 Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 SUPERFAMILY SSF52833 5 94 1.34E-22 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 5 81 1.3E-7 T 11-11-2016 Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 SMART SM00928 440 485 5.2E-17 T 11-11-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 SUPERFAMILY SSF142984 352 435 3.53E-25 T 11-11-2016 Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 SUPERFAMILY SSF142019 110 351 3.66E-95 T 11-11-2016 Gferi_RS22885 b5a49b9d0a1663ebc516fdcec78b74fc 548 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 159 330 5.0E-48 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS24555 3771a97a22f057856845d16be3d0b7ff 327 Gene3D G3DSA:3.30.70.20 208 239 7.3E-6 T 11-11-2016 Gferi_RS24555 3771a97a22f057856845d16be3d0b7ff 327 Pfam PF12801 4Fe-4S binding domain 57 69 20.0 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24555 3771a97a22f057856845d16be3d0b7ff 327 Pfam PF12801 4Fe-4S binding domain 78 118 2.4E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24555 3771a97a22f057856845d16be3d0b7ff 327 Pfam PF12801 4Fe-4S binding domain 191 224 3.6E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24555 3771a97a22f057856845d16be3d0b7ff 327 Pfam PF12801 4Fe-4S binding domain 153 167 0.0022 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS24555 3771a97a22f057856845d16be3d0b7ff 327 Gene3D G3DSA:3.30.70.20 240 277 8.4E-6 T 11-11-2016 Gferi_RS24555 3771a97a22f057856845d16be3d0b7ff 327 SUPERFAMILY SSF54862 153 278 1.42E-17 T 11-11-2016 Gferi_RS24555 3771a97a22f057856845d16be3d0b7ff 327 SUPERFAMILY SSF54862 82 105 1.42E-17 T 11-11-2016 Gferi_RS04565 836c32c6c0968108714b278b321458b1 266 Pfam PF00809 Pterin binding enzyme 8 227 2.3E-27 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS04565 836c32c6c0968108714b278b321458b1 266 SUPERFAMILY SSF51717 2 261 1.16E-72 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS04565 836c32c6c0968108714b278b321458b1 266 Gene3D G3DSA:3.20.20.20 2 261 9.3E-81 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 Pfam PF00155 Aminotransferase class I and II 33 390 9.4E-81 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 Gene3D G3DSA:3.40.640.10 46 273 5.3E-82 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 229 253 1.6E-11 T 11-11-2016 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 94 114 1.6E-11 T 11-11-2016 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 116 137 1.6E-11 T 11-11-2016 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 163 187 1.6E-11 T 11-11-2016 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 235 248 - T 11-11-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 Gene3D G3DSA:3.90.1150.10 274 394 1.3E-46 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS00605 b39418735a95c69a616c4401dd4b0b45 395 SUPERFAMILY SSF53383 11 394 4.44E-123 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS21405 a8655c04c0e7a3d6f5e186f3cf521961 163 SUPERFAMILY SSF50475 37 137 1.12E-10 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS21405 a8655c04c0e7a3d6f5e186f3cf521961 163 Gene3D G3DSA:2.30.110.10 39 137 2.3E-8 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 Pfam PF12848 ABC transporter 224 303 3.1E-20 T 11-11-2016 IPR032781 ABC-transporter extension domain Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 Gene3D G3DSA:3.40.50.300 132 281 8.5E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 Gene3D G3DSA:3.40.50.300 2 100 8.5E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 Gene3D G3DSA:3.40.50.300 318 526 2.0E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 SUPERFAMILY SSF52540 125 257 1.39E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 SUPERFAMILY SSF52540 2 92 1.39E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 Pfam PF00005 ABC transporter 18 184 3.1E-23 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 Pfam PF00005 ABC transporter 335 467 4.1E-13 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 SMART SM00382 26 228 7.2E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 SMART SM00382 344 519 7.7 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15065 6584a281990150a3920f73a9b848c282 529 SUPERFAMILY SSF52540 295 524 1.3E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16565 2d54909cd7166aa0bd50399d392d276d 253 Pfam PF00037 4Fe-4S binding domain 7 30 2.4E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS16565 2d54909cd7166aa0bd50399d392d276d 253 Gene3D G3DSA:3.30.70.20 4 69 1.7E-14 T 11-11-2016 Gferi_RS16565 2d54909cd7166aa0bd50399d392d276d 253 SUPERFAMILY SSF54862 5 66 4.19E-16 T 11-11-2016 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Gene3D G3DSA:2.120.10.90 495 804 8.2E-131 T 11-11-2016 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 610 653 3.9E-8 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 758 802 3.6E-8 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 553 602 8.9E-11 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 658 703 8.2E-15 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 506 550 4.3E-9 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 708 755 1.0E-12 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 805 0.0 T 11-11-2016 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 SUPERFAMILY SSF56719 30 486 1.14E-182 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 471 1.5E-163 T 11-11-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Gene3D G3DSA:3.30.1360.40 236 331 1.5E-40 T 11-11-2016 IPR024946 Arginine repressor C-terminal-like domain Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Gene3D G3DSA:3.90.199.10 30 235 1.5E-123 T 11-11-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Gene3D G3DSA:3.90.199.10 333 398 1.5E-123 T 11-11-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 SMART SM00434 11 464 2.3E-290 T 11-11-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 806 25.173 T 11-11-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13230 4ccf909c7b545698d8726b7a0bc46d37 813 SUPERFAMILY SSF101904 498 812 4.58E-113 T 11-11-2016 Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 Gene3D G3DSA:1.10.10.10 1 82 2.2E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 SUPERFAMILY SSF53850 97 289 2.44E-27 T 11-11-2016 Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 Gene3D G3DSA:3.40.190.10 169 257 1.1E-22 T 11-11-2016 Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 Pfam PF03466 LysR substrate binding domain 99 284 7.9E-29 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 Gene3D G3DSA:3.40.190.10 99 168 2.7E-7 T 11-11-2016 Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 2.7E-17 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07730 6bda5be9ceb0e06fa1f449595214d7eb 292 SUPERFAMILY SSF46785 1 87 2.34E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13695 72b126d2c373836262eedb3004445504 162 SUPERFAMILY SSF47240 4 161 2.88E-24 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS13695 72b126d2c373836262eedb3004445504 162 Pfam PF02915 Rubrerythrin 8 157 3.8E-15 T 11-11-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Gferi_RS13695 72b126d2c373836262eedb3004445504 162 Gene3D G3DSA:1.20.1260.10 4 161 6.4E-34 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 ProSitePatterns PS00517 Ribonuclease III family signature. 51 59 - T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 SMART SM00535 27 162 1.7E-49 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 SMART SM00358 169 236 2.7E-23 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 SUPERFAMILY SSF69065 9 171 5.41E-50 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 Gene3D G3DSA:3.30.160.20 168 234 7.1E-29 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 Pfam PF14622 Ribonuclease-III-like 26 153 2.1E-42 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 Hamap MF_00104 Ribonuclease 3 [rnc]. 15 232 32.046 T 11-11-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 SUPERFAMILY SSF54768 123 235 4.09E-24 T 11-11-2016 Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 Gene3D G3DSA:1.10.1520.10 12 158 2.6E-47 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 Pfam PF00035 Double-stranded RNA binding motif 169 234 1.7E-20 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain Gferi_RS01550 aab55557b7abbf16bf64172b3331b1cc 236 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 15 234 3.3E-80 T 11-11-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Gferi_RS01930 cf2d223ece99b0257f200930bf2de5b3 241 Pfam PF05949 Bacterial protein of unknown function (DUF881) 88 235 1.9E-40 T 11-11-2016 IPR010273 Protein of unknown function DUF881 Gferi_RS01015 5d1c67e25a32477399436bdd63152cea 177 Gene3D G3DSA:3.60.20.10 5 177 3.8E-78 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS01015 5d1c67e25a32477399436bdd63152cea 177 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 4 177 40.15 T 11-11-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Gferi_RS01015 5d1c67e25a32477399436bdd63152cea 177 Pfam PF00227 Proteasome subunit 1 176 1.1E-29 T 11-11-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5687128|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-983168 Gferi_RS01015 5d1c67e25a32477399436bdd63152cea 177 PIRSF PIRSF039093 1 177 8.2E-83 T 11-11-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Gferi_RS01015 5d1c67e25a32477399436bdd63152cea 177 SUPERFAMILY SSF56235 1 177 1.04E-59 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS01015 5d1c67e25a32477399436bdd63152cea 177 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 5 177 1.1E-81 T 11-11-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Gferi_RS24485 a8feda35abfafb0cac63bc15248430b0 661 Pfam PF03030 Inorganic H+ pyrophosphatase 12 650 2.9E-283 T 11-11-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 Gferi_RS24485 a8feda35abfafb0cac63bc15248430b0 661 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1 655 26.303 T 11-11-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 Gferi_RS24485 a8feda35abfafb0cac63bc15248430b0 661 PIRSF PIRSF001265 1 661 1.6E-278 T 11-11-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 Gferi_RS24485 a8feda35abfafb0cac63bc15248430b0 661 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 4 659 2.1E-266 T 11-11-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 Gferi_RS16005 97fc315c342584b39b355602de6e82d2 409 Pfam PF13533 Biotin-lipoyl like 68 108 2.8E-10 T 11-11-2016 Gferi_RS16005 97fc315c342584b39b355602de6e82d2 409 Pfam PF13437 HlyD family secretion protein 225 313 6.7E-11 T 11-11-2016 Gferi_RS16005 97fc315c342584b39b355602de6e82d2 409 Gene3D G3DSA:2.40.50.100 222 253 7.9E-9 T 11-11-2016 Gferi_RS16005 97fc315c342584b39b355602de6e82d2 409 Gene3D G3DSA:2.40.50.100 68 95 7.9E-9 T 11-11-2016 Gferi_RS16005 97fc315c342584b39b355602de6e82d2 409 SUPERFAMILY SSF111369 51 120 2.22E-9 T 11-11-2016 Gferi_RS09330 ed2b825f3bf9ef7440b8094cbab41253 111 SUPERFAMILY SSF52091 3 107 1.27E-20 T 11-11-2016 IPR002645 STAS domain Gferi_RS09330 ed2b825f3bf9ef7440b8094cbab41253 111 Pfam PF01740 STAS domain 4 105 4.6E-17 T 11-11-2016 IPR002645 STAS domain Gferi_RS09330 ed2b825f3bf9ef7440b8094cbab41253 111 Gene3D G3DSA:3.30.750.24 3 105 3.0E-22 T 11-11-2016 IPR002645 STAS domain Gferi_RS09330 ed2b825f3bf9ef7440b8094cbab41253 111 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 3 103 3.6E-20 T 11-11-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 SUPERFAMILY SSF55186 70 239 8.37E-32 T 11-11-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 Gene3D G3DSA:3.40.50.300 303 507 5.9E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 290 489 7.0E-18 T 11-11-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 SUPERFAMILY SSF52540 284 486 1.97E-25 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 Gene3D G3DSA:3.10.20.30 12 66 3.9E-8 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 SMART SM00382 287 448 1.9E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 Gene3D G3DSA:3.30.980.10 191 200 2.2E-19 T 11-11-2016 Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 Gene3D G3DSA:3.30.980.10 71 134 2.2E-19 T 11-11-2016 Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 Gene3D G3DSA:3.40.50.300 255 302 5.6E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24075 1302bb84d400c44984a526e6c64bd9c9 556 SUPERFAMILY SSF81271 15 66 1.67E-6 T 11-11-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Gferi_RS00500 fd07776b5ea75991686e9a2935f0142e 233 Pfam PF00072 Response regulator receiver domain 8 118 1.0E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00500 fd07776b5ea75991686e9a2935f0142e 233 SUPERFAMILY SSF52172 5 174 1.51E-41 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS00500 fd07776b5ea75991686e9a2935f0142e 233 SMART SM00448 6 117 2.2E-44 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00500 fd07776b5ea75991686e9a2935f0142e 233 SMART SM00862 153 229 4.7E-29 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS00500 fd07776b5ea75991686e9a2935f0142e 233 Gene3D G3DSA:3.40.50.2300 2 125 1.6E-40 T 11-11-2016 Gferi_RS00500 fd07776b5ea75991686e9a2935f0142e 233 Gene3D G3DSA:1.10.10.10 132 231 1.7E-37 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00500 fd07776b5ea75991686e9a2935f0142e 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 229 2.8E-30 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS23875 baa4e255d1d452ec9af87f05579c24d9 177 Pfam PF03773 Predicted permease 35 169 8.7E-17 T 11-11-2016 IPR005524 Predicted permease DUF318 Gferi_RS16310 67ce068761325dceeb6d30ded48b75fc 133 Gene3D G3DSA:2.30.110.10 1 128 1.2E-42 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS16310 67ce068761325dceeb6d30ded48b75fc 133 SUPERFAMILY SSF50475 3 127 9.38E-18 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS02235 8874c64200fbf7c3c0e656ac0656d5f8 247 SUPERFAMILY SSF57863 81 234 8.11E-38 T 11-11-2016 Gferi_RS02235 8874c64200fbf7c3c0e656ac0656d5f8 247 Gene3D G3DSA:2.40.50.140 2 81 1.5E-20 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS02235 8874c64200fbf7c3c0e656ac0656d5f8 247 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 245 1.7E-56 T 11-11-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Gferi_RS02235 8874c64200fbf7c3c0e656ac0656d5f8 247 SUPERFAMILY SSF50249 1 78 2.4E-14 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS02235 8874c64200fbf7c3c0e656ac0656d5f8 247 Hamap MF_00201 DNA repair protein RecO [recO]. 1 246 28.089 T 11-11-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Gferi_RS02235 8874c64200fbf7c3c0e656ac0656d5f8 247 Pfam PF11967 Recombination protein O N terminal 1 78 2.3E-19 T 11-11-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal Gferi_RS02235 8874c64200fbf7c3c0e656ac0656d5f8 247 Pfam PF02565 Recombination protein O C terminal 82 241 2.4E-36 T 11-11-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Gferi_RS22735 e1a334cf15abce3ae8bebc99cfded2e7 338 Gene3D G3DSA:3.40.190.10 6 125 2.0E-37 T 11-11-2016 Gferi_RS22735 e1a334cf15abce3ae8bebc99cfded2e7 338 Gene3D G3DSA:3.40.190.10 268 326 2.0E-37 T 11-11-2016 Gferi_RS22735 e1a334cf15abce3ae8bebc99cfded2e7 338 PIRSF PIRSF002825 5 335 1.6E-72 T 11-11-2016 IPR026045 Ferric binding protein Gferi_RS22735 e1a334cf15abce3ae8bebc99cfded2e7 338 Gene3D G3DSA:3.40.190.10 128 267 7.1E-36 T 11-11-2016 Gferi_RS22735 e1a334cf15abce3ae8bebc99cfded2e7 338 SUPERFAMILY SSF53850 31 333 1.63E-68 T 11-11-2016 Gferi_RS22735 e1a334cf15abce3ae8bebc99cfded2e7 338 Pfam PF13343 Bacterial extracellular solute-binding protein 91 282 6.6E-30 T 11-11-2016 Gferi_RS19460 5d698ff66e1461ec369478d33be9788a 325 Gene3D G3DSA:3.40.50.300 1 244 6.4E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19460 5d698ff66e1461ec369478d33be9788a 325 SUPERFAMILY SSF52540 27 234 1.57E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19460 5d698ff66e1461ec369478d33be9788a 325 SMART SM00382 39 308 3.2E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19460 5d698ff66e1461ec369478d33be9788a 325 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS19460 5d698ff66e1461ec369478d33be9788a 325 Pfam PF00005 ABC transporter 31 174 1.1E-25 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19960 327b3e2fd15a8df68ca463019d6c252e 210 ProDom PD058023 TRANSMEMBRANE SO1069 MEMBRANE VCA0743 SO4196 VVA0623 VPA0666 HI1736 PM0424 4 53 5.0E-14 T 11-11-2016 IPR020137 Uncharacterised protein family HI1736 Gferi_RS19960 327b3e2fd15a8df68ca463019d6c252e 210 Pfam PF10688 Bacterial inner membrane protein 4 74 3.0E-8 T 11-11-2016 IPR019629 Uncharacterised protein family HI1736/YgjV Gferi_RS19960 327b3e2fd15a8df68ca463019d6c252e 210 SUPERFAMILY SSF55729 93 199 1.23E-7 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19960 327b3e2fd15a8df68ca463019d6c252e 210 Gene3D G3DSA:3.40.630.30 100 198 6.4E-5 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 Pfam PF01926 50S ribosome-binding GTPase 6 121 3.4E-30 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 Pfam PF01926 50S ribosome-binding GTPase 178 296 7.7E-26 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 126 1.3E-27 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 176 342 1.4E-25 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 SUPERFAMILY SSF52540 5 166 2.53E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 354 434 3.2E-33 T 11-11-2016 IPR032859 GTPase Der, C-terminal KH-domain-like Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 SUPERFAMILY SSF52540 139 436 2.1E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 PIRSF PIRSF006485 2 440 1.1E-176 T 11-11-2016 IPR016484 GTP-binding protein EngA GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 Gene3D G3DSA:3.40.50.300 4 166 6.0E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 Gene3D G3DSA:3.40.50.300 174 359 3.4E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 Hamap MF_00195 GTPase Der [der]. 3 437 40.999 T 11-11-2016 IPR016484 GTP-binding protein EngA GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 6 26 1.5E-6 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 74 92 1.5E-6 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 434 1.4E-178 T 11-11-2016 IPR016484 GTP-binding protein EngA GO:0005525 Gferi_RS01850 369e88ed4599ea3dfa5cfc2003be2fe9 440 Gene3D G3DSA:3.30.300.20 360 436 1.0E-34 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta Gferi_RS12995 f0dd074fdbfabd3ec60769cda88393b7 766 Gene3D G3DSA:3.40.630.10 551 658 5.9E-8 T 11-11-2016 Gferi_RS12995 f0dd074fdbfabd3ec60769cda88393b7 766 Gene3D G3DSA:3.40.630.10 361 411 5.9E-8 T 11-11-2016 Gferi_RS12995 f0dd074fdbfabd3ec60769cda88393b7 766 SUPERFAMILY SSF53187 550 660 1.51E-5 T 11-11-2016 Gferi_RS12995 f0dd074fdbfabd3ec60769cda88393b7 766 SUPERFAMILY SSF53187 362 405 1.51E-5 T 11-11-2016 Gferi_RS12995 f0dd074fdbfabd3ec60769cda88393b7 766 SUPERFAMILY SSF161098 76 240 6.1E-7 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS12995 f0dd074fdbfabd3ec60769cda88393b7 766 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 305 1.3E-6 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19130 50e3d8d4c77bac8383f48369fe7acb58 584 Gene3D G3DSA:2.60.120.10 231 471 3.3E-46 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS19130 50e3d8d4c77bac8383f48369fe7acb58 584 PIRSF PIRSF026713 3 584 6.8E-188 T 11-11-2016 IPR016847 Mannose-6-phosphate isomerase, Firmicutes, long form, predicted Gferi_RS19130 50e3d8d4c77bac8383f48369fe7acb58 584 SUPERFAMILY SSF51182 232 468 3.34E-69 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS19130 50e3d8d4c77bac8383f48369fe7acb58 584 SUPERFAMILY SSF51182 495 568 3.34E-69 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS21140 9e4f1141b2e88cf501e58e684f164781 283 Gene3D G3DSA:3.40.140.10 1 138 5.3E-37 T 11-11-2016 Gferi_RS21140 9e4f1141b2e88cf501e58e684f164781 283 SUPERFAMILY SSF53927 1 139 7.62E-34 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 Gferi_RS21140 9e4f1141b2e88cf501e58e684f164781 283 Pfam PF14437 MafB19-like deaminase 1 101 3.7E-22 T 11-11-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Gferi_RS21140 9e4f1141b2e88cf501e58e684f164781 283 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 46 82 - T 11-11-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Gferi_RS22090 b24421477b41e84ca461864cd8536c33 298 SUPERFAMILY SSF103481 187 286 1.14E-11 T 11-11-2016 Gferi_RS22090 b24421477b41e84ca461864cd8536c33 298 SUPERFAMILY SSF103481 40 140 3.66E-16 T 11-11-2016 Gferi_RS22090 b24421477b41e84ca461864cd8536c33 298 Pfam PF00892 EamA-like transporter family 5 139 1.8E-25 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS22090 b24421477b41e84ca461864cd8536c33 298 Pfam PF00892 EamA-like transporter family 152 285 9.6E-22 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS04410 8c7c2c8ed7dcf4c7f406b193253e2ccb 309 SUPERFAMILY SSF53613 1 286 2.34E-72 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS04410 8c7c2c8ed7dcf4c7f406b193253e2ccb 309 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 305 9.9E-101 T 11-11-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Gferi_RS04410 8c7c2c8ed7dcf4c7f406b193253e2ccb 309 Pfam PF00294 pfkB family carbohydrate kinase 7 286 2.6E-55 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS04410 8c7c2c8ed7dcf4c7f406b193253e2ccb 309 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 305 4.4E-100 T 11-11-2016 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 Gferi_RS04410 8c7c2c8ed7dcf4c7f406b193253e2ccb 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 247 260 - T 11-11-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Gferi_RS04410 8c7c2c8ed7dcf4c7f406b193253e2ccb 309 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 36 60 - T 11-11-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Gferi_RS04410 8c7c2c8ed7dcf4c7f406b193253e2ccb 309 PIRSF PIRSF000535 1 308 4.9E-86 T 11-11-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Gferi_RS04410 8c7c2c8ed7dcf4c7f406b193253e2ccb 309 Gene3D G3DSA:3.40.1190.20 32 305 8.3E-81 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 Gene3D G3DSA:3.40.50.1000 3 19 5.1E-43 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 Gene3D G3DSA:3.40.50.1000 91 215 5.1E-43 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 83 180 2.8E-6 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 SUPERFAMILY SSF56784 3 215 9.08E-51 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 176 189 9.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 149 169 9.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 9.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 100 113 9.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 131 147 9.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 187 2.6E-32 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23445 3f07f14e335e18f594a64ce4fc44a40d 217 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 135 186 1.5E-15 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 SMART SM00864 13 205 1.0E-119 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 PRINTS PR00423 Cell division protein FtsZ signature 98 118 1.1E-51 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 PRINTS PR00423 Cell division protein FtsZ signature 189 211 1.1E-51 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 PRINTS PR00423 Cell division protein FtsZ signature 212 233 1.1E-51 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 PRINTS PR00423 Cell division protein FtsZ signature 126 147 1.1E-51 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 SMART SM00865 207 324 6.2E-61 T 11-11-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 173 1.0E-44 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 333 39.835 T 11-11-2016 IPR000158 Cell division protein FtsZ GO:0005525 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 11-11-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 Pfam PF12327 FtsZ family, C-terminal domain 222 316 1.0E-38 T 11-11-2016 IPR024757 Cell division protein FtsZ, C-terminal Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 SUPERFAMILY SSF52490 12 208 6.8E-73 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 Gene3D G3DSA:3.30.1330.20 215 319 9.0E-52 T 11-11-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 11-11-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 10 325 7.6E-140 T 11-11-2016 IPR000158 Cell division protein FtsZ GO:0005525 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 SUPERFAMILY SSF55307 204 318 3.66E-47 T 11-11-2016 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 Gferi_RS01920 ee3b5e95cb14513f22126f2db323d395 359 Gene3D G3DSA:3.40.50.1440 13 214 1.1E-97 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Gferi_RS05060 9947a0e8b2a6785af3067556b8fdd32d 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 371 8.0E-116 T 11-11-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Gferi_RS05060 9947a0e8b2a6785af3067556b8fdd32d 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 11-11-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Gferi_RS05060 9947a0e8b2a6785af3067556b8fdd32d 385 SUPERFAMILY SSF56796 4 382 1.44E-120 T 11-11-2016 Gferi_RS05060 9947a0e8b2a6785af3067556b8fdd32d 385 Gene3D G3DSA:3.40.50.1970 5 185 6.2E-60 T 11-11-2016 Gferi_RS05060 9947a0e8b2a6785af3067556b8fdd32d 385 Gene3D G3DSA:1.20.1090.10 186 381 1.4E-59 T 11-11-2016 Gferi_RS18065 95cbfdbacfcb0cf1fc224658c58fa573 257 Gene3D G3DSA:3.20.20.70 1 252 1.5E-82 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS18065 95cbfdbacfcb0cf1fc224658c58fa573 257 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 236 8.7E-43 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS18065 95cbfdbacfcb0cf1fc224658c58fa573 257 Pfam PF00121 Triosephosphate isomerase 5 248 6.7E-72 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS18065 95cbfdbacfcb0cf1fc224658c58fa573 257 SUPERFAMILY SSF51351 1 251 6.02E-73 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS18065 95cbfdbacfcb0cf1fc224658c58fa573 257 ProSitePatterns PS00171 Triosephosphate isomerase active site. 166 176 - T 11-11-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS18065 95cbfdbacfcb0cf1fc224658c58fa573 257 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 251 31.639 T 11-11-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 SUPERFAMILY SSF82714 183 263 1.57E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 SUPERFAMILY SSF82693 561 650 1.15E-8 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Gene3D G3DSA:1.10.3850.10 797 1012 1.3E-63 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Gene3D G3DSA:3.30.70.1320 152 177 2.5E-10 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Gene3D G3DSA:3.30.70.1320 267 294 2.5E-10 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 PRINTS PR00702 Acriflavin resistance protein family signature 381 405 1.6E-42 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 PRINTS PR00702 Acriflavin resistance protein family signature 460 483 1.6E-42 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 PRINTS PR00702 Acriflavin resistance protein family signature 326 349 1.6E-42 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 PRINTS PR00702 Acriflavin resistance protein family signature 353 374 1.6E-42 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 PRINTS PR00702 Acriflavin resistance protein family signature 547 564 1.6E-42 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.6E-42 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.6E-42 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 SUPERFAMILY SSF82714 706 791 6.67E-16 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Gene3D G3DSA:3.30.70.1430 562 650 6.9E-7 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Gene3D G3DSA:1.20.1640.10 295 497 2.7E-54 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Gene3D G3DSA:3.30.2090.10 183 263 1.2E-15 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Gene3D G3DSA:3.30.2090.10 706 791 2.7E-16 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Pfam PF00873 AcrB/AcrD/AcrF family 4 1010 2.3E-264 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 SUPERFAMILY SSF82866 287 487 1.57E-43 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 SUPERFAMILY SSF82693 40 133 6.28E-24 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 Gene3D G3DSA:3.30.70.1430 40 139 1.1E-24 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 SUPERFAMILY SSF82693 136 180 3.14E-13 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 SUPERFAMILY SSF82693 265 319 3.14E-13 T 11-11-2016 Gferi_RS21905 74ad6c2fae813a4d21c3dc95e5a5ebe7 1031 SUPERFAMILY SSF82866 790 1016 5.49E-56 T 11-11-2016 Gferi_RS04720 b3b3c0a7f58ac5ba92926a98291cfd11 229 Gene3D G3DSA:3.30.240.20 170 228 7.1E-13 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS04720 b3b3c0a7f58ac5ba92926a98291cfd11 229 Gene3D G3DSA:3.30.240.20 82 152 4.1E-24 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS04720 b3b3c0a7f58ac5ba92926a98291cfd11 229 Pfam PF04239 Protein of unknown function (DUF421) 89 198 1.1E-25 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS02475 fa7647c897dc71be5871235a1407e0db 61 Pfam PF13783 Domain of unknown function (DUF4177) 4 47 2.6E-10 T 11-11-2016 IPR025234 Protein of unknown function DUF4177 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 473 576 2.8E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 SUPERFAMILY SSF158472 294 344 1.44E-8 T 11-11-2016 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 Gene3D G3DSA:3.30.565.10 427 577 3.5E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 575 1.7E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 520 1.7E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 534 1.7E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 557 1.7E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 Pfam PF00672 HAMP domain 277 340 4.3E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 Gene3D G3DSA:1.10.287.130 352 421 5.6E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 SUPERFAMILY SSF47384 346 425 8.83E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 Pfam PF00512 His Kinase A (phospho-acceptor) domain 361 425 1.1E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 SMART SM00304 293 345 6.0E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 SMART SM00387 469 578 2.1E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 SMART SM00388 360 425 2.2E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21495 9ca783ed8c18799a9c8b36ba1d14c20e 578 SUPERFAMILY SSF55874 415 576 9.82E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 SMART SM00304 79 131 1.6E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 SMART SM00388 139 206 8.5E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 Gene3D G3DSA:1.10.287.130 130 192 2.6E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 255 360 2.2E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 SUPERFAMILY SSF47384 122 207 1.96E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 Pfam PF00512 His Kinase A (phospho-acceptor) domain 140 203 5.7E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 SMART SM00387 252 362 3.0E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 341 2.1E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 PRINTS PR00344 Bacterial sensor protein C-terminal signature 306 316 2.1E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 SUPERFAMILY SSF158472 85 130 1.96E-9 T 11-11-2016 Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 SUPERFAMILY SSF55874 195 359 1.03E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 Gene3D G3DSA:3.30.565.10 193 363 5.7E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02875 8f199c416fa3f0ff35c1a25bc4b3e45a 367 Pfam PF00672 HAMP domain 61 127 1.0E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS17635 b6f379f3870c8a8d4f003b5e48e67389 329 Pfam PF13353 4Fe-4S single cluster domain 74 173 2.3E-5 T 11-11-2016 Gferi_RS17635 b6f379f3870c8a8d4f003b5e48e67389 329 PIRSF PIRSF004869 1 307 2.4E-87 T 11-11-2016 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted Gferi_RS17635 b6f379f3870c8a8d4f003b5e48e67389 329 SUPERFAMILY SSF102114 53 278 4.97E-36 T 11-11-2016 Gferi_RS17635 b6f379f3870c8a8d4f003b5e48e67389 329 Pfam PF04055 Radical SAM superfamily 83 236 4.9E-20 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS17635 b6f379f3870c8a8d4f003b5e48e67389 329 TIGRFAM TIGR04337 AmmeMemoSam_rS: AmmeMemoRadiSam system radical SAM enzyme 9 326 4.3E-97 T 11-11-2016 IPR027596 AmmeMemoRadiSam system radical SAM enzyme Gferi_RS17635 b6f379f3870c8a8d4f003b5e48e67389 329 SMART SM00729 75 275 8.2E-4 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS17635 b6f379f3870c8a8d4f003b5e48e67389 329 Gene3D G3DSA:3.80.30.10 122 283 2.5E-36 T 11-11-2016 Gferi_RS00580 bb35b34140c09ed3bf574b125b777040 101 Gene3D G3DSA:3.10.20.30 27 87 2.1E-4 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS00580 bb35b34140c09ed3bf574b125b777040 101 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 60 68 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Gferi_RS00580 bb35b34140c09ed3bf574b125b777040 101 SUPERFAMILY SSF54292 17 96 4.59E-19 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS00580 bb35b34140c09ed3bf574b125b777040 101 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 15 95 3.3E-28 T 11-11-2016 Gferi_RS15880 a347c1611774ae1ad7cf93d626bab285 186 SUPERFAMILY SSF143414 5 92 8.11E-27 T 11-11-2016 Gferi_RS15880 a347c1611774ae1ad7cf93d626bab285 186 SMART SM00877 4 80 2.0E-28 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15880 a347c1611774ae1ad7cf93d626bab285 186 Pfam PF00936 BMC domain 5 80 2.0E-23 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15880 a347c1611774ae1ad7cf93d626bab285 186 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 44 5.0E-8 T 11-11-2016 Gferi_RS25270 14452661255e525a69510bac454955c4 331 SUPERFAMILY SSF51658 6 315 1.01E-54 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS25270 14452661255e525a69510bac454955c4 331 Pfam PF07582 AP endonuclease family 2 C terminus 275 328 4.0E-20 T 11-11-2016 IPR011418 AP endonuclease, family 2, C-terminal Gferi_RS25270 14452661255e525a69510bac454955c4 331 Gene3D G3DSA:3.20.20.150 3 316 1.3E-72 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS25270 14452661255e525a69510bac454955c4 331 Pfam PF01261 Xylose isomerase-like TIM barrel 22 272 1.6E-35 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS26685 6ae413a199794aaecf12d733bcfd2f4e 207 Pfam PF00753 Metallo-beta-lactamase superfamily 12 189 2.9E-31 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS26685 6ae413a199794aaecf12d733bcfd2f4e 207 SMART SM00849 12 189 6.0E-45 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS26685 6ae413a199794aaecf12d733bcfd2f4e 207 SUPERFAMILY SSF56281 6 206 3.01E-56 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS26685 6ae413a199794aaecf12d733bcfd2f4e 207 Gene3D G3DSA:3.60.15.10 8 206 1.5E-59 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS18340 aa55c8bac0e1b487d5c672166fa76ca5 89 Gene3D G3DSA:2.40.50.220 1 88 6.0E-34 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS18340 aa55c8bac0e1b487d5c672166fa76ca5 89 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 11 83 4.0E-15 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS18340 aa55c8bac0e1b487d5c672166fa76ca5 89 SUPERFAMILY SSF159133 1 88 1.15E-30 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS18340 aa55c8bac0e1b487d5c672166fa76ca5 89 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 83 4.0E-32 T 11-11-2016 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Gferi_RS11085 1e774818acaa603b31e9384a2af3f61a 345 Pfam PF00953 Glycosyl transferase family 4 73 230 1.9E-46 T 11-11-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Gferi_RS11085 1e774818acaa603b31e9384a2af3f61a 345 ProSitePatterns PS01348 MraY family signature 2. 150 161 - T 11-11-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS05815 2eea7033ddc893861a0ed845e567d932 119 Gene3D G3DSA:2.40.50.40 13 78 3.2E-16 T 11-11-2016 Gferi_RS05815 2eea7033ddc893861a0ed845e567d932 119 SMART SM00850 21 117 3.1E-11 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS05815 2eea7033ddc893861a0ed845e567d932 119 Pfam PF04397 LytTr DNA-binding domain 24 113 6.6E-15 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS11095 cce64dff016d938e25586aecad555cc9 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 4 209 7.4E-91 T 11-11-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Gferi_RS11095 cce64dff016d938e25586aecad555cc9 209 Gene3D G3DSA:3.40.50.2020 3 209 8.2E-87 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS11095 cce64dff016d938e25586aecad555cc9 209 Pfam PF14681 Uracil phosphoribosyltransferase 6 208 1.5E-77 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS11095 cce64dff016d938e25586aecad555cc9 209 SUPERFAMILY SSF53271 4 207 8.78E-75 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS11095 cce64dff016d938e25586aecad555cc9 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 47.969 T 11-11-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Gferi_RS07335 b64a517385c47b67a29ecbe659a1c3b4 341 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 32 340 1.9E-142 T 11-11-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: R-HSA-70895 Gferi_RS07335 b64a517385c47b67a29ecbe659a1c3b4 341 Gene3D G3DSA:3.20.10.10 164 326 9.1E-58 T 11-11-2016 Gferi_RS07335 b64a517385c47b67a29ecbe659a1c3b4 341 SUPERFAMILY SSF56752 4 337 1.57E-104 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS07335 b64a517385c47b67a29ecbe659a1c3b4 341 ProSitePatterns PS00770 Aminotransferases class-IV signature. 221 250 - T 11-11-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS07335 b64a517385c47b67a29ecbe659a1c3b4 341 PIRSF PIRSF006468 1 341 5.3E-122 T 11-11-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: R-HSA-70895 Gferi_RS07335 b64a517385c47b67a29ecbe659a1c3b4 341 Pfam PF01063 Amino-transferase class IV 57 294 2.8E-36 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 Gferi_RS07335 b64a517385c47b67a29ecbe659a1c3b4 341 Gene3D G3DSA:3.30.470.10 3 163 1.1E-67 T 11-11-2016 Gferi_RS03090 ea49c55f96cf5ef2db145c6fb52247c3 386 SUPERFAMILY SSF53383 4 375 1.13E-103 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS03090 ea49c55f96cf5ef2db145c6fb52247c3 386 PIRSF PIRSF005572 1 383 2.7E-130 T 11-11-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 Gferi_RS03090 ea49c55f96cf5ef2db145c6fb52247c3 386 Gene3D G3DSA:3.90.1150.10 249 374 3.4E-40 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS03090 ea49c55f96cf5ef2db145c6fb52247c3 386 Pfam PF00266 Aminotransferase class-V 4 368 3.7E-83 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS03090 ea49c55f96cf5ef2db145c6fb52247c3 386 Gene3D G3DSA:3.40.640.10 15 248 5.8E-82 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS03090 ea49c55f96cf5ef2db145c6fb52247c3 386 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 194 213 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Gferi_RS15005 14b4f10430e9e9049434867a52df2209 400 SUPERFAMILY SSF53686 6 308 3.54E-100 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS15005 14b4f10430e9e9049434867a52df2209 400 Gene3D G3DSA:3.40.50.1100 69 320 2.6E-84 T 11-11-2016 Gferi_RS15005 14b4f10430e9e9049434867a52df2209 400 Gene3D G3DSA:3.30.70.260 327 391 6.6E-6 T 11-11-2016 Gferi_RS15005 14b4f10430e9e9049434867a52df2209 400 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 301 5.6E-85 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS15005 14b4f10430e9e9049434867a52df2209 400 SUPERFAMILY SSF55021 321 394 6.11E-6 T 11-11-2016 Gferi_RS15005 14b4f10430e9e9049434867a52df2209 400 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 21 396 1.9E-144 T 11-11-2016 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 Gferi_RS15005 14b4f10430e9e9049434867a52df2209 400 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 11-11-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Gferi_RS01560 929aab0c7821807ed0095dab3ef84acb 76 Hamap MF_01217 Acyl carrier protein [acpP]. 1 76 20.874 T 11-11-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS01560 929aab0c7821807ed0095dab3ef84acb 76 Pfam PF00550 Phosphopantetheine attachment site 4 72 3.6E-18 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS01560 929aab0c7821807ed0095dab3ef84acb 76 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 3.8E-28 T 11-11-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS01560 929aab0c7821807ed0095dab3ef84acb 76 SUPERFAMILY SSF47336 2 75 1.44E-23 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS01560 929aab0c7821807ed0095dab3ef84acb 76 Gene3D G3DSA:1.10.1200.10 2 75 8.1E-30 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS01560 929aab0c7821807ed0095dab3ef84acb 76 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 33 75 3.0E-11 T 11-11-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 298 309 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 Pfam PF12838 4Fe-4S dicluster domain 268 310 2.5E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 Gene3D G3DSA:3.20.20.100 1 217 2.5E-27 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 SUPERFAMILY SSF51430 1 258 5.89E-33 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 SUPERFAMILY SSF54862 261 316 1.73E-16 T 11-11-2016 Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 Pfam PF00248 Aldo/keto reductase family 15 162 7.3E-19 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 Gene3D G3DSA:3.30.70.20 255 315 2.7E-15 T 11-11-2016 Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 PRINTS PR00069 Aldo-keto reductase signature 42 66 6.3E-7 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 PRINTS PR00069 Aldo-keto reductase signature 128 145 6.3E-7 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS08915 015258fc813be231ed7d7a97c90ef5ae 316 PRINTS PR00069 Aldo-keto reductase signature 93 111 6.3E-7 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS26645 407f2d2ac6239da917ec79767a54dc4c 453 Pfam PF13353 4Fe-4S single cluster domain 95 227 1.8E-14 T 11-11-2016 Gferi_RS26645 407f2d2ac6239da917ec79767a54dc4c 453 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 342 427 2.0E-21 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS26645 407f2d2ac6239da917ec79767a54dc4c 453 SUPERFAMILY SSF102114 91 411 1.15E-55 T 11-11-2016 Gferi_RS26645 407f2d2ac6239da917ec79767a54dc4c 453 TIGRFAM TIGR03974 rSAM_six_Cys: SCIFF radical SAM maturase 2 445 3.1E-216 T 11-11-2016 IPR024025 SCIFF radical SAM maturase Gferi_RS26645 407f2d2ac6239da917ec79767a54dc4c 453 Gene3D G3DSA:3.20.20.70 85 419 1.7E-56 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS26645 407f2d2ac6239da917ec79767a54dc4c 453 Pfam PF04055 Radical SAM superfamily 99 249 8.8E-10 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS26645 407f2d2ac6239da917ec79767a54dc4c 453 Pfam PF13186 Iron-sulfur cluster-binding domain 342 402 1.5E-7 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS26645 407f2d2ac6239da917ec79767a54dc4c 453 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 98 109 - T 11-11-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 198 306 4.3E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 Gene3D G3DSA:3.40.50.300 316 493 7.3E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 534 543 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 SMART SM00382 340 485 7.3E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 SUPERFAMILY SSF55785 198 298 1.43E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 Gene3D G3DSA:1.10.8.60 494 550 6.0E-18 T 11-11-2016 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 Pfam PF02954 Bacterial regulatory protein, Fis family 582 619 3.0E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 SUPERFAMILY SSF52540 320 549 3.69E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 Pfam PF00158 Sigma-54 interaction domain 320 487 1.5E-69 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 Pfam PF13188 PAS domain 200 254 1.6E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 Gene3D G3DSA:3.30.450.20 197 300 1.2E-10 T 11-11-2016 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 407 422 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 Gene3D G3DSA:1.10.10.60 569 622 1.7E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 SUPERFAMILY SSF46689 534 621 7.62E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 344 357 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 585 602 2.3E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS19220 382e529938a3fed649832c2f76c9bd2c 623 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 602 622 2.3E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS02975 88b1bc3db8565926d11173398fa0fbea 151 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Gferi_RS02975 88b1bc3db8565926d11173398fa0fbea 151 Pfam PF01799 [2Fe-2S] binding domain 73 146 7.5E-30 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS02975 88b1bc3db8565926d11173398fa0fbea 151 SUPERFAMILY SSF47741 84 150 1.44E-30 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS02975 88b1bc3db8565926d11173398fa0fbea 151 Gene3D G3DSA:3.10.20.30 2 74 5.3E-30 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS02975 88b1bc3db8565926d11173398fa0fbea 151 Gene3D G3DSA:1.10.150.120 75 150 4.4E-35 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS02975 88b1bc3db8565926d11173398fa0fbea 151 SUPERFAMILY SSF54292 3 78 1.97E-24 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS02975 88b1bc3db8565926d11173398fa0fbea 151 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 54 7.1E-7 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 Gene3D G3DSA:3.40.50.10490 23 99 2.6E-71 T 11-11-2016 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 Gene3D G3DSA:3.40.50.10490 158 230 2.6E-71 T 11-11-2016 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 Pfam PF00318 Ribosomal protein S2 9 224 8.1E-102 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 11-11-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 1.4E-111 T 11-11-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 43.264 T 11-11-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 SUPERFAMILY SSF52313 6 229 7.46E-99 T 11-11-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 11-11-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 Gene3D G3DSA:1.10.287.610 100 152 1.1E-24 T 11-11-2016 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 PRINTS PR00395 Ribosomal protein S2 signature 158 175 7.8E-41 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 PRINTS PR00395 Ribosomal protein S2 signature 175 186 7.8E-41 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 PRINTS PR00395 Ribosomal protein S2 signature 196 210 7.8E-41 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 PRINTS PR00395 Ribosomal protein S2 signature 37 46 7.8E-41 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 PRINTS PR00395 Ribosomal protein S2 signature 87 104 7.8E-41 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS00800 99a8f132370d71a6dba9f95ea7377f7c 232 PRINTS PR00395 Ribosomal protein S2 signature 6 24 7.8E-41 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 Gene3D G3DSA:4.10.480.10 203 281 1.6E-30 T 11-11-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 PIRSF PIRSF000310 3 283 1.4E-96 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 137 161 5.3E-31 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 190 207 5.3E-31 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 208 226 5.3E-31 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 23 45 5.3E-31 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 165 188 5.3E-31 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 46 70 5.3E-31 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 SUPERFAMILY SSF56770 25 281 1.7E-73 T 11-11-2016 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 Gene3D G3DSA:3.40.50.700 25 201 2.2E-46 T 11-11-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 203 280 9.0E-32 T 11-11-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 24 280 2.0E-65 T 11-11-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 Gferi_RS07480 6e7dcbe28a1665efa6372b7411cdcd5e 283 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 38 184 3.2E-29 T 11-11-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 SUPERFAMILY SSF56784 310 330 3.71E-61 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 SUPERFAMILY SSF56784 367 605 3.71E-61 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 SUPERFAMILY SSF81653 113 210 2.09E-26 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 Gene3D G3DSA:2.70.150.10 61 211 7.2E-29 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 61 609 1.3E-159 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 Pfam PF00122 E1-E2 ATPase 82 303 7.0E-65 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 541 6.0E-23 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 312 326 6.0E-23 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 449 459 6.0E-23 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 426 437 6.0E-23 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 505 524 6.0E-23 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 160 174 6.0E-23 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 SUPERFAMILY SSF81665 61 114 1.24E-14 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 SUPERFAMILY SSF81665 211 306 1.24E-14 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 SUPERFAMILY SSF81665 555 604 1.24E-14 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 Gene3D G3DSA:3.40.50.1000 428 576 8.9E-47 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 Pfam PF00702 haloacid dehalogenase-like hydrolase 310 519 9.6E-37 T 11-11-2016 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 Gene3D G3DSA:3.40.1110.10 303 333 1.5E-4 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 Gene3D G3DSA:3.40.1110.10 334 427 2.2E-8 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 314 320 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 61 607 1.1E-172 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS23735 d0b5405b7cd30366a3bfe23947f83791 614 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 82 586 2.4E-75 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SMART SM00086 204 244 0.058 T 11-11-2016 IPR001610 PAC motif Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SMART SM00086 324 366 4.7E-7 T 11-11-2016 IPR001610 PAC motif Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SMART SM00086 78 120 28.0 T 11-11-2016 IPR001610 PAC motif Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 252 372 9.8E-23 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 27 126 1.1E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 128 251 2.6E-21 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Pfam PF00990 Diguanylate cyclase, GGDEF domain 377 534 1.5E-55 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Pfam PF00563 EAL domain 554 789 2.1E-72 T 11-11-2016 IPR001633 EAL domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 374 536 1.4E-44 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Gene3D G3DSA:3.30.450.20 242 360 3.0E-31 T 11-11-2016 Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SMART SM00267 366 538 2.2E-73 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SUPERFAMILY SSF55785 24 122 1.53E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Pfam PF00989 PAS fold 133 241 5.6E-9 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Pfam PF13426 PAS domain 263 365 1.3E-19 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SMART SM00052 548 794 3.6E-122 T 11-11-2016 IPR001633 EAL domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Gene3D G3DSA:3.30.70.270 378 546 1.2E-61 T 11-11-2016 Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Gene3D G3DSA:3.20.20.450 551 801 2.6E-100 T 11-11-2016 IPR001633 EAL domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SUPERFAMILY SSF141868 553 803 5.36E-94 T 11-11-2016 IPR001633 EAL domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Gene3D G3DSA:3.30.450.20 23 128 7.5E-17 T 11-11-2016 Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SUPERFAMILY SSF55785 117 242 1.26E-21 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SUPERFAMILY SSF55073 382 540 3.3E-53 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SMART SM00091 132 197 3.1E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SMART SM00091 2 71 110.0 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SMART SM00091 252 319 3.9E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 SUPERFAMILY SSF55785 257 364 6.12E-31 T 11-11-2016 IPR000014 PAS domain Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Gene3D G3DSA:3.30.450.20 129 241 1.9E-23 T 11-11-2016 Gferi_RS22990 89caf9f991a1e6db98750f478ce2ca09 811 Pfam PF08447 PAS fold 27 107 4.4E-15 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 Gferi_RS24195 2c40bebfd1ddd148e51b78ec70af2997 180 PIRSF PIRSF015617 1 180 2.2E-61 T 11-11-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Gferi_RS24195 2c40bebfd1ddd148e51b78ec70af2997 180 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 7 179 1.2E-60 T 11-11-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Gferi_RS24195 2c40bebfd1ddd148e51b78ec70af2997 180 Gene3D G3DSA:3.40.50.300 3 179 2.5E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24195 2c40bebfd1ddd148e51b78ec70af2997 180 SUPERFAMILY SSF52540 6 179 8.14E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 Gene3D G3DSA:3.30.70.120 1 127 5.4E-34 T 11-11-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 SMART SM00938 4 120 5.0E-36 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 ProSitePatterns PS00638 P-II protein C-terminal region signature. 98 111 - T 11-11-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 PRINTS PR00340 P-II protein signature 23 41 7.5E-21 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 PRINTS PR00340 P-II protein signature 67 90 7.5E-21 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 PRINTS PR00340 P-II protein signature 2 17 7.5E-21 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 PRINTS PR00340 P-II protein signature 98 118 7.5E-21 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 SUPERFAMILY SSF54913 1 38 4.13E-28 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 SUPERFAMILY SSF54913 70 127 4.13E-28 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta Gferi_RS18730 3d4f1730d067bc9412d3303119d7c084 128 Pfam PF00543 Nitrogen regulatory protein P-II 4 120 1.3E-28 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS11960 9e23236d5b4b7e3c90b9666fd02714d0 144 Gene3D G3DSA:1.25.40.10 3 132 2.5E-7 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS11960 9e23236d5b4b7e3c90b9666fd02714d0 144 SUPERFAMILY SSF48452 6 129 3.51E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 PIRSF PIRSF000193 5 272 1.4E-77 T 11-11-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 SUPERFAMILY SSF48179 165 272 2.72E-34 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 8 269 8.8E-85 T 11-11-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 7 102 3.6E-20 T 11-11-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 Gene3D G3DSA:3.40.50.720 3 163 6.8E-43 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 SUPERFAMILY SSF51735 7 162 1.4E-29 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 165 269 9.0E-37 T 11-11-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 6 269 26.735 T 11-11-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 Gene3D G3DSA:1.10.3730.10 165 269 2.8E-38 T 11-11-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Gferi_RS20320 61522a95505d41813aff6bd19c10cfbd 275 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 225 247 - T 11-11-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 Gferi_RS01965 0db11000c1631aaec3f86d90b99a6fef 321 Pfam PF00953 Glycosyl transferase family 4 79 246 1.1E-39 T 11-11-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Gferi_RS01965 0db11000c1631aaec3f86d90b99a6fef 321 ProSitePatterns PS01347 MraY family signature 1. 49 61 - T 11-11-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS01965 0db11000c1631aaec3f86d90b99a6fef 321 ProSitePatterns PS01348 MraY family signature 2. 166 177 - T 11-11-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS01965 0db11000c1631aaec3f86d90b99a6fef 321 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 6 320 23.121 T 11-11-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS01965 0db11000c1631aaec3f86d90b99a6fef 321 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 49 61 2.1E-4 T 11-11-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS01965 0db11000c1631aaec3f86d90b99a6fef 321 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 18 317 1.7E-104 T 11-11-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS04780 5221afb1e28e910a86019bffbb5dc479 185 Gene3D G3DSA:3.40.50.150 29 145 4.1E-13 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS04780 5221afb1e28e910a86019bffbb5dc479 185 SUPERFAMILY SSF53335 27 151 6.36E-15 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15490 38b1854e6c361d18491c776b7851c8d8 164 Gene3D G3DSA:1.20.1260.10 5 150 1.9E-20 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS15490 38b1854e6c361d18491c776b7851c8d8 164 SUPERFAMILY SSF47240 9 151 5.49E-13 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS15490 38b1854e6c361d18491c776b7851c8d8 164 Pfam PF02915 Rubrerythrin 10 149 5.8E-6 T 11-11-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 Gene3D G3DSA:3.30.70.80 39 88 1.6E-6 T 11-11-2016 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 Pfam PF00082 Subtilase family 111 380 2.5E-55 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 Gene3D G3DSA:3.40.50.200 100 388 3.4E-90 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 155 165 - T 11-11-2016 IPR022398 Peptidase S8, subtilisin, His-active site Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 SUPERFAMILY SSF52743 101 389 1.07E-82 T 11-11-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 116 127 - T 11-11-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 SUPERFAMILY SSF54897 35 87 4.93E-5 T 11-11-2016 IPR009020 Proteinase propeptide inhibitor Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 PRINTS PR00723 Subtilisin serine protease family (S8) signature 111 130 4.7E-17 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 PRINTS PR00723 Subtilisin serine protease family (S8) signature 331 347 4.7E-17 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 PRINTS PR00723 Subtilisin serine protease family (S8) signature 151 164 4.7E-17 T 11-11-2016 IPR015500 Peptidase S8, subtilisin-related Gferi_RS13755 7f39075fae9c23e69b0693db6b7d8eff 434 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 332 342 - T 11-11-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site Gferi_RS21930 763c80b6b8abd1212aa23a4bd50cf251 460 Pfam PF01554 MatE 250 404 1.7E-23 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS21930 763c80b6b8abd1212aa23a4bd50cf251 460 Pfam PF01554 MatE 22 185 1.3E-26 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS21930 763c80b6b8abd1212aa23a4bd50cf251 460 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 416 1.0E-59 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS21930 763c80b6b8abd1212aa23a4bd50cf251 460 PIRSF PIRSF006603 1 454 1.7E-91 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 SUPERFAMILY SSF46689 632 675 2.87E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 SUPERFAMILY SSF159800 4 181 1.83E-42 T 11-11-2016 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 527 536 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 341 354 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Pfam PF02954 Bacterial regulatory protein, Fis family 634 673 5.8E-15 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Pfam PF00158 Sigma-54 interaction domain 317 484 4.8E-66 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 SMART SM00382 337 481 5.0E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 SUPERFAMILY SSF52540 316 553 1.89E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Gene3D G3DSA:3.40.50.300 313 490 1.8E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Pfam PF06506 Propionate catabolism activator 25 181 7.2E-38 T 11-11-2016 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Gene3D G3DSA:1.10.10.60 540 559 2.2E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Gene3D G3DSA:1.10.10.60 621 675 2.2E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Gene3D G3DSA:3.40.50.2300 4 90 1.1E-9 T 11-11-2016 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 656 676 3.4E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 639 656 3.4E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Gene3D G3DSA:3.40.50.10660 91 163 2.9E-14 T 11-11-2016 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Gene3D G3DSA:1.10.8.60 491 539 1.4E-15 T 11-11-2016 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 Gene3D G3DSA:3.30.450.20 194 302 9.6E-6 T 11-11-2016 Gferi_RS09715 d76a4dfd480a8cb931e2e1fc7513510c 676 SUPERFAMILY SSF55785 185 285 9.42E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS15690 7ed7db7361ca4f373290f3954ae3c1de 251 Pfam PF01936 NYN domain 12 145 1.5E-30 T 11-11-2016 IPR021139 NYN domain, limkain-b1-type Gferi_RS15690 7ed7db7361ca4f373290f3954ae3c1de 251 Gene3D G3DSA:3.40.50.1010 7 149 9.7E-33 T 11-11-2016 IPR029060 PIN domain-like Gferi_RS15690 7ed7db7361ca4f373290f3954ae3c1de 251 Pfam PF12872 OST-HTH/LOTUS domain 173 236 4.9E-13 T 11-11-2016 IPR025605 OST-HTH/LOTUS domain Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 SUPERFAMILY SSF55874 280 429 4.85E-30 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 Pfam PF00672 HAMP domain 141 206 3.3E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 SUPERFAMILY SSF47384 193 270 1.96E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 388 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 409 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 427 5.3E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 Pfam PF00512 His Kinase A (phospho-acceptor) domain 212 267 3.7E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 Gene3D G3DSA:3.30.565.10 282 428 3.1E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 SMART SM00388 210 276 1.0E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 Gene3D G3DSA:1.10.287.130 200 267 4.0E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS27000 543b4e11946f38ef53d193c50add997a 441 SMART SM00387 322 430 1.1E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26820 7d019cbe68c5fd1ca3e4089b3a93611c 149 SUPERFAMILY SSF46785 2 137 9.67E-38 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26820 7d019cbe68c5fd1ca3e4089b3a93611c 149 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-11-2016 IPR030489 Transcription regulator Rrf2-type, conserved site Gferi_RS26820 7d019cbe68c5fd1ca3e4089b3a93611c 149 Gene3D G3DSA:1.10.10.10 1 141 9.0E-38 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26820 7d019cbe68c5fd1ca3e4089b3a93611c 149 Pfam PF02082 Transcriptional regulator 1 82 2.6E-30 T 11-11-2016 IPR000944 Transcription regulator Rrf2-type Gferi_RS26820 7d019cbe68c5fd1ca3e4089b3a93611c 149 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 3.1E-42 T 11-11-2016 IPR000944 Transcription regulator Rrf2-type Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 SMART SM00631 130 412 2.6E-26 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 Pfam PF01476 LysM domain 75 118 1.3E-10 T 11-11-2016 IPR018392 LysM domain Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 Pfam PF00246 Zinc carboxypeptidase 136 414 2.2E-41 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 SUPERFAMILY SSF53187 129 418 8.27E-59 T 11-11-2016 Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 Pfam PF01471 Putative peptidoglycan binding domain 9 63 1.5E-20 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 329 342 1.3E-6 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 173 187 1.3E-6 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 154 166 1.3E-6 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 271 279 1.3E-6 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 SUPERFAMILY SSF47090 3 65 1.22E-21 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 SMART SM00257 74 118 3.9E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 Gene3D G3DSA:1.10.101.10 2 64 4.4E-25 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 SUPERFAMILY SSF54106 74 118 4.71E-10 T 11-11-2016 IPR018392 LysM domain Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 Gene3D G3DSA:3.40.630.10 130 418 9.1E-55 T 11-11-2016 Gferi_RS22950 ef6869c43c68149d515cb32a938c65f3 423 Gene3D G3DSA:3.10.350.10 74 118 5.3E-15 T 11-11-2016 IPR018392 LysM domain Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 19 122 3.8E-29 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 152 710 1.0E-133 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 SMART SM01008 19 122 1.3E-46 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Gene3D G3DSA:3.90.1170.50 4 110 1.3E-42 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Gene3D G3DSA:3.30.365.10 287 361 7.1E-34 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Gene3D G3DSA:3.30.365.10 111 178 7.1E-34 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 SUPERFAMILY SSF56003 114 767 7.59E-157 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Gene3D G3DSA:3.30.365.10 179 284 3.1E-28 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Gene3D G3DSA:3.30.365.10 451 587 2.0E-31 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 SUPERFAMILY SSF54665 3 142 1.57E-42 T 11-11-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Gene3D G3DSA:3.30.365.10 627 767 1.5E-45 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS22050 d2eba80cc58406a24a225dcafd4ca71c 775 Gene3D G3DSA:3.30.365.10 363 450 1.5E-45 T 11-11-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 173 305 3.5E-37 T 11-11-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 417 1.0E-18 T 11-11-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 Gene3D G3DSA:3.40.50.720 164 311 3.8E-27 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 SUPERFAMILY SSF69075 317 419 1.57E-14 T 11-11-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 SUPERFAMILY SSF51735 163 313 5.24E-28 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 SUPERFAMILY SSF69742 1 158 2.62E-41 T 11-11-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 PIRSF PIRSF000445 1 425 3.8E-132 T 11-11-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 418 2.2E-124 T 11-11-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 26.875 T 11-11-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 3.8E-41 T 11-11-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Gferi_RS24275 4af2b0ede7b3a869448e6d073fc25a72 426 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 11-11-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 Gferi_RS13815 fbcda17b6bf943a7012959f291b6951a 212 ProDom PD002660 TRANSFERASE CHLORAMPHENICOL ACYLTRANSFERASE ACETYLTRANSFERASE ANTIBIOTIC RESISTANCE PLASMID CAT O-ACETYLTRANSFERASE DIRECT 12 198 7.0E-55 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS13815 fbcda17b6bf943a7012959f291b6951a 212 SUPERFAMILY SSF52777 1 208 1.41E-59 T 11-11-2016 Gferi_RS13815 fbcda17b6bf943a7012959f291b6951a 212 PIRSF PIRSF000440 1 211 3.6E-62 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS13815 fbcda17b6bf943a7012959f291b6951a 212 Pfam PF00302 Chloramphenicol acetyltransferase 4 202 6.8E-40 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS13815 fbcda17b6bf943a7012959f291b6951a 212 SMART SM01059 1 202 4.0E-86 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS13815 fbcda17b6bf943a7012959f291b6951a 212 Gene3D G3DSA:3.30.559.10 1 206 2.2E-73 T 11-11-2016 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 Gene3D G3DSA:3.30.565.10 155 304 2.4E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 SUPERFAMILY SSF55874 142 303 2.23E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 SMART SM00388 86 151 8.2E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 SUPERFAMILY SSF47384 79 151 9.81E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 201 304 2.9E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 Gene3D G3DSA:1.10.287.130 78 147 1.5E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 SMART SM00387 195 305 1.0E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 PRINTS PR00344 Bacterial sensor protein C-terminal signature 265 283 3.8E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 PRINTS PR00344 Bacterial sensor protein C-terminal signature 250 260 3.8E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 PRINTS PR00344 Bacterial sensor protein C-terminal signature 232 246 3.8E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 302 3.8E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS19515 832f48bec63bcea069437913ad52c293 305 Pfam PF00512 His Kinase A (phospho-acceptor) domain 88 151 2.8E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14385 e4789c551a5ff6a37cae8ff980e21fcd 338 SUPERFAMILY SSF53850 47 337 1.12E-67 T 11-11-2016 Gferi_RS14385 e4789c551a5ff6a37cae8ff980e21fcd 338 Pfam PF16868 NMT1-like family 51 335 1.0E-75 T 11-11-2016 IPR011852 TRAP transporter solute receptor, TAXI family Gferi_RS14385 e4789c551a5ff6a37cae8ff980e21fcd 338 Gene3D G3DSA:3.40.190.10 269 336 2.0E-42 T 11-11-2016 Gferi_RS14385 e4789c551a5ff6a37cae8ff980e21fcd 338 Gene3D G3DSA:3.40.190.10 47 127 2.0E-42 T 11-11-2016 Gferi_RS14385 e4789c551a5ff6a37cae8ff980e21fcd 338 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 11 335 2.8E-83 T 11-11-2016 IPR011852 TRAP transporter solute receptor, TAXI family Gferi_RS14385 e4789c551a5ff6a37cae8ff980e21fcd 338 Gene3D G3DSA:3.40.190.10 138 268 9.0E-40 T 11-11-2016 Gferi_RS20230 564fadbac0a66a9853b0b99761310274 377 Pfam PF00266 Aminotransferase class-V 30 322 5.6E-27 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS20230 564fadbac0a66a9853b0b99761310274 377 Gene3D G3DSA:3.40.640.10 16 256 2.2E-50 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS20230 564fadbac0a66a9853b0b99761310274 377 PIRSF PIRSF000524 1 375 2.1E-99 T 11-11-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 Gferi_RS20230 564fadbac0a66a9853b0b99761310274 377 SUPERFAMILY SSF53383 4 362 5.36E-88 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS20230 564fadbac0a66a9853b0b99761310274 377 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 182 202 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Gferi_RS20230 564fadbac0a66a9853b0b99761310274 377 Gene3D G3DSA:3.90.1150.10 261 363 1.2E-26 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS06850 4875fddc484441671822e03aa9c29328 300 SUPERFAMILY SSF161098 57 286 1.26E-57 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06850 4875fddc484441671822e03aa9c29328 300 Gene3D G3DSA:1.10.3720.10 62 296 1.4E-56 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06850 4875fddc484441671822e03aa9c29328 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 295 3.6E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06850 4875fddc484441671822e03aa9c29328 300 Gene3D G3DSA:1.20.58.370 9 43 8.2E-7 T 11-11-2016 Gferi_RS06850 4875fddc484441671822e03aa9c29328 300 SUPERFAMILY SSF160964 9 47 1.96E-7 T 11-11-2016 Gferi_RS16535 ac7f042def9ebbc7aff46e9a8eb84d52 284 Gene3D G3DSA:3.20.20.150 86 280 1.1E-31 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS16535 ac7f042def9ebbc7aff46e9a8eb84d52 284 Pfam PF01261 Xylose isomerase-like TIM barrel 66 243 2.4E-24 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS16535 ac7f042def9ebbc7aff46e9a8eb84d52 284 SUPERFAMILY SSF51658 26 282 4.32E-42 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS17125 966a15edf4d835d58b17b89d951a6220 146 SUPERFAMILY SSF55021 68 142 7.38E-10 T 11-11-2016 Gferi_RS17125 966a15edf4d835d58b17b89d951a6220 146 Pfam PF13291 ACT domain 66 141 1.6E-6 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 Gferi_RS17125 966a15edf4d835d58b17b89d951a6220 146 Gene3D G3DSA:3.30.70.260 66 141 4.4E-8 T 11-11-2016 Gferi_RS17125 966a15edf4d835d58b17b89d951a6220 146 Hamap MF_00707 UPF0735 ACT domain-containing protein . 2 146 31.286 T 11-11-2016 IPR008310 UPF0735 ACT domain-containing protein GO:0009094 Gferi_RS17125 966a15edf4d835d58b17b89d951a6220 146 PIRSF PIRSF025624 1 146 7.7E-54 T 11-11-2016 IPR008310 UPF0735 ACT domain-containing protein GO:0009094 Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 Gene3D G3DSA:3.40.630.10 352 412 5.8E-97 T 11-11-2016 Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 Gene3D G3DSA:3.40.630.10 2 226 5.8E-97 T 11-11-2016 Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 7 408 8.4E-130 T 11-11-2016 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 SUPERFAMILY SSF53187 337 412 2.14E-80 T 11-11-2016 Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 SUPERFAMILY SSF53187 3 223 2.14E-80 T 11-11-2016 Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 PIRSF PIRSF001235 1 414 1.4E-140 T 11-11-2016 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 Gene3D G3DSA:3.30.70.360 227 330 1.6E-28 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 SUPERFAMILY SSF55031 215 329 8.37E-21 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 Pfam PF01546 Peptidase family M20/M25/M40 77 407 6.4E-32 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS09875 aa722eb8857731429e68afe01d74a1f4 424 Pfam PF07687 Peptidase dimerisation domain 216 314 4.3E-7 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 Gene3D G3DSA:3.40.50.1380 2 186 4.2E-86 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 SUPERFAMILY SSF52335 2 193 1.83E-71 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 Gene3D G3DSA:3.40.140.20 239 357 8.8E-47 T 11-11-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 Pfam PF02142 MGS-like domain 14 129 3.9E-30 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3 513 4.4E-216 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 SMART SM00851 14 129 3.2E-59 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 2 513 44.441 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 SMART SM00798 134 448 1.3E-192 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 PIRSF PIRSF000414 1 513 2.4E-215 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 Gene3D G3DSA:3.40.140.20 364 503 4.2E-52 T 11-11-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 SUPERFAMILY SSF53927 206 513 1.2E-121 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 Gferi_RS09995 3c64ea9fd6261dd2fa84d3542472b308 513 Pfam PF01808 AICARFT/IMPCHase bienzyme 134 446 2.1E-118 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS24390 24aa646a62748cc7ac2a05cc436e4755 106 Pfam PF00085 Thioredoxin 3 103 1.1E-22 T 11-11-2016 IPR013766 Thioredoxin domain GO:0045454 Gferi_RS24390 24aa646a62748cc7ac2a05cc436e4755 106 Gene3D G3DSA:3.40.30.10 2 105 7.8E-27 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS24390 24aa646a62748cc7ac2a05cc436e4755 106 PIRSF PIRSF000077 1 105 2.5E-23 T 11-11-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Gferi_RS24390 24aa646a62748cc7ac2a05cc436e4755 106 SUPERFAMILY SSF52833 4 104 2.01E-26 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS13030 59c44b45726ca91604f5c64597ece1a2 120 Pfam PF07892 Protein of unknown function (DUF1667) 37 118 1.7E-32 T 11-11-2016 IPR012460 Protein of unknown function DUF1667 Gferi_RS13030 59c44b45726ca91604f5c64597ece1a2 120 SUPERFAMILY SSF160148 49 120 4.18E-24 T 11-11-2016 IPR012460 Protein of unknown function DUF1667 Gferi_RS13030 59c44b45726ca91604f5c64597ece1a2 120 Gene3D G3DSA:3.10.530.10 49 118 2.5E-29 T 11-11-2016 IPR012460 Protein of unknown function DUF1667 Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 Pfam PF03793 PASTA domain 600 670 9.2E-9 T 11-11-2016 IPR005543 PASTA domain Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 SMART SM00740 596 672 1.4E-6 T 11-11-2016 IPR005543 PASTA domain Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 Pfam PF03717 Penicillin-binding Protein dimerisation domain 55 203 2.8E-18 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 Gene3D G3DSA:3.90.1310.10 128 228 1.4E-28 T 11-11-2016 Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 Pfam PF00905 Penicillin binding protein transpeptidase domain 248 575 2.8E-77 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 TIGRFAM TIGR02214 spoVD_pbp: stage V sporulation protein D 11 670 4.2E-208 T 11-11-2016 IPR011927 Stage V sporulation protein D Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 Gene3D G3DSA:3.40.710.10 229 585 3.9E-107 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 SUPERFAMILY SSF56601 301 589 8.8E-103 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 SUPERFAMILY SSF56601 173 271 8.8E-103 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS01980 00c43eb990d1ca455d160e7b0b49e878 675 SUPERFAMILY SSF56519 51 221 3.14E-38 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 Gene3D G3DSA:3.40.630.10 297 384 2.4E-43 T 11-11-2016 Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 Gene3D G3DSA:3.40.630.10 10 188 2.4E-43 T 11-11-2016 Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 Pfam PF07687 Peptidase dimerisation domain 185 282 6.3E-20 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 PIRSF PIRSF037238 7 384 2.7E-94 T 11-11-2016 IPR017150 Peptidase M20, glutamate carboxypeptidase Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 SUPERFAMILY SSF55031 188 293 6.41E-21 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 Pfam PF01546 Peptidase family M20/M25/M40 83 377 8.4E-18 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 SUPERFAMILY SSF53187 308 383 6.29E-46 T 11-11-2016 Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 SUPERFAMILY SSF53187 10 197 6.29E-46 T 11-11-2016 Gferi_RS22530 47c2ced19b459c1109d387114111855e 394 Gene3D G3DSA:3.30.70.360 189 292 3.7E-23 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS26575 19483d53ad94d6beccc34623da06f1e2 385 Pfam PF00589 Phage integrase family 184 366 6.1E-22 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS26575 19483d53ad94d6beccc34623da06f1e2 385 SUPERFAMILY SSF56349 68 375 3.3E-65 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS26575 19483d53ad94d6beccc34623da06f1e2 385 Gene3D G3DSA:1.10.443.10 182 374 9.2E-38 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS26575 19483d53ad94d6beccc34623da06f1e2 385 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 69 126 6.7E-16 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Gferi_RS26575 19483d53ad94d6beccc34623da06f1e2 385 Gene3D G3DSA:1.10.150.130 68 176 9.3E-23 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 35 49 2.6E-11 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 13 29 2.6E-11 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 54 67 2.6E-11 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 2.6E-11 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 Gene3D G3DSA:3.40.50.150 4 63 1.4E-46 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 Gene3D G3DSA:3.40.50.150 160 269 1.4E-46 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 TIGRFAM TIGR00571 dam: DNA adenine methylase 8 269 8.4E-69 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 13 248 9.8E-48 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 Gene3D G3DSA:1.10.1020.10 64 146 2.8E-24 T 11-11-2016 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 PIRSF PIRSF000398 4 272 1.5E-59 T 11-11-2016 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 Gferi_RS01215 16af6c739b903fc833f6533c2dd9da89 272 SUPERFAMILY SSF53335 9 269 1.13E-64 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS26670 29bc2cde59ad7fbee06a6b981738236f 170 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 170 38.547 T 11-11-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 Gferi_RS26670 29bc2cde59ad7fbee06a6b981738236f 170 Gene3D G3DSA:3.40.50.2020 2 170 1.0E-66 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS26670 29bc2cde59ad7fbee06a6b981738236f 170 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 3 170 1.1E-69 T 11-11-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 Gferi_RS26670 29bc2cde59ad7fbee06a6b981738236f 170 SUPERFAMILY SSF53271 2 166 3.12E-52 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS26670 29bc2cde59ad7fbee06a6b981738236f 170 Pfam PF00156 Phosphoribosyl transferase domain 42 148 1.1E-12 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 257 371 5.5E-11 T 11-11-2016 IPR000014 PAS domain Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 SUPERFAMILY SSF158472 200 248 1.96E-9 T 11-11-2016 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 Pfam PF00672 HAMP domain 183 247 4.0E-16 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 487 597 3.9E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 SUPERFAMILY SSF47384 358 440 1.96E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 Gene3D G3DSA:3.30.565.10 426 598 5.2E-52 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 Pfam PF00512 His Kinase A (phospho-acceptor) domain 373 438 9.8E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 Gene3D G3DSA:3.30.450.20 255 364 4.9E-15 T 11-11-2016 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 SMART SM00388 373 440 4.7E-22 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 Gene3D G3DSA:1.10.287.130 365 425 4.9E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 SUPERFAMILY SSF55874 430 596 7.33E-49 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 SMART SM00304 200 252 1.2E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 SUPERFAMILY SSF55785 247 365 1.43E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 SMART SM00387 486 598 1.6E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 SMART SM00091 259 325 8.4E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 551 4.7E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 576 4.7E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 537 4.7E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 595 4.7E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS13770 2150511660fed2cd4e36610a9e4f33f5 601 Pfam PF13426 PAS domain 271 366 1.9E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 421 3.0E-43 T 11-11-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 Gene3D G3DSA:3.10.50.40 156 216 1.4E-6 T 11-11-2016 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 Gene3D G3DSA:3.30.70.1050 1 119 1.1E-36 T 11-11-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 SUPERFAMILY SSF102735 1 131 5.36E-38 T 11-11-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 Pfam PF05697 Bacterial trigger factor protein (TF) 1 145 1.6E-44 T 11-11-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 SUPERFAMILY SSF54534 89 243 1.43E-34 T 11-11-2016 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 Gene3D G3DSA:1.10.3120.10 217 397 2.8E-58 T 11-11-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 Hamap MF_00303 Trigger factor [tig]. 1 425 22.569 T 11-11-2016 IPR005215 Trigger factor GO:0015031 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 SUPERFAMILY SSF109998 249 425 9.55E-43 T 11-11-2016 IPR027304 Trigger factor/SurA domain Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 TIGRFAM TIGR00115 tig: trigger factor 12 421 6.5E-140 T 11-11-2016 IPR005215 Trigger factor GO:0015031 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 159 238 3.2E-12 T 11-11-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 Gferi_RS09280 6dfb8c987e60d695c215a360df09bbad 425 PIRSF PIRSF003095 1 425 1.7E-129 T 11-11-2016 IPR005215 Trigger factor GO:0015031 Gferi_RS17935 3b7f9b6e392ff6b6d7789b3dac8cc397 349 SUPERFAMILY SSF51726 11 343 2.3E-9 T 11-11-2016 Gferi_RS17935 3b7f9b6e392ff6b6d7789b3dac8cc397 349 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 74 273 3.0E-6 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS17935 3b7f9b6e392ff6b6d7789b3dac8cc397 349 Gene3D G3DSA:3.20.20.210 76 346 9.4E-11 T 11-11-2016 Gferi_RS07910 e9efc366a6b72078648ed65a8ef3cabb 185 Gene3D G3DSA:2.30.110.10 11 171 7.7E-41 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS07910 e9efc366a6b72078648ed65a8ef3cabb 185 SUPERFAMILY SSF50475 11 167 3.58E-34 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS07910 e9efc366a6b72078648ed65a8ef3cabb 185 SMART SM00903 11 150 6.5E-12 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS07910 e9efc366a6b72078648ed65a8ef3cabb 185 Pfam PF01613 Flavin reductase like domain 14 144 5.8E-20 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 Gene3D G3DSA:1.10.287.130 406 465 9.4E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 SUPERFAMILY SSF47384 402 480 1.18E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 Pfam PF00512 His Kinase A (phospho-acceptor) domain 415 479 6.4E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 SUPERFAMILY SSF55874 470 633 3.67E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 Gene3D G3DSA:3.30.565.10 466 638 1.2E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 SMART SM00304 341 393 1.2E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 SUPERFAMILY SSF158472 341 390 5.49E-9 T 11-11-2016 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 563 577 5.1E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 598 616 5.1E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 PRINTS PR00344 Bacterial sensor protein C-terminal signature 581 591 5.1E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 SMART SM00388 415 480 9.5E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 SMART SM00387 526 637 4.9E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 Pfam PF00672 HAMP domain 323 389 1.3E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14465 672f0668d1d706f3e902e4e278e34772 641 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 527 635 3.9E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 SUPERFAMILY SSF52540 4 244 1.92E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 SMART SM00382 29 217 8.4E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 SUPERFAMILY SSF50331 237 368 2.11E-28 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 Gene3D G3DSA:2.40.50.140 290 353 2.6E-16 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 Gene3D G3DSA:3.40.50.300 4 235 6.8E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 Pfam PF08402 TOBE domain 285 360 2.2E-9 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 Pfam PF00005 ABC transporter 22 162 1.9E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 Gene3D G3DSA:2.40.50.100 240 289 2.9E-21 T 11-11-2016 Gferi_RS22150 6a0161abb81b54f50e41e5ac0cb2e1b0 370 Gene3D G3DSA:2.40.50.100 354 369 2.9E-21 T 11-11-2016 Gferi_RS17905 0951abac634ab959916318ba9ae868f4 345 PIRSF PIRSF006470 14 345 2.5E-89 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS17905 0951abac634ab959916318ba9ae868f4 345 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 48 330 2.4E-79 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS17905 0951abac634ab959916318ba9ae868f4 345 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 51 306 3.7E-69 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS19120 27bdceff74b806978363c2b70bb7cab5 258 Pfam PF06560 Glucose-6-phosphate isomerase (GPI) 49 191 7.4E-25 T 11-11-2016 IPR010551 Glucose-6-phosphate isomerase, prokaryote GO:0004347|GO:0005737|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 Gferi_RS19120 27bdceff74b806978363c2b70bb7cab5 258 Gene3D G3DSA:2.60.120.10 16 206 1.8E-37 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS19120 27bdceff74b806978363c2b70bb7cab5 258 SUPERFAMILY SSF51182 27 191 3.78E-24 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS13530 7f5e26f302debf1762148ec104eddafa 246 SUPERFAMILY SSF160467 6 87 2.62E-19 T 11-11-2016 Gferi_RS13530 7f5e26f302debf1762148ec104eddafa 246 Pfam PF02682 Allophanate hydrolase subunit 1 6 206 1.8E-76 T 11-11-2016 IPR003833 Carboxyltransferase domain, subdomain C and D Gferi_RS13530 7f5e26f302debf1762148ec104eddafa 246 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 11 215 1.5E-67 T 11-11-2016 IPR010016 KipI family Gferi_RS13530 7f5e26f302debf1762148ec104eddafa 246 SMART SM00796 5 206 8.0E-97 T 11-11-2016 IPR003833 Carboxyltransferase domain, subdomain C and D Gferi_RS13530 7f5e26f302debf1762148ec104eddafa 246 Gene3D G3DSA:3.30.1360.40 6 84 7.3E-23 T 11-11-2016 IPR024946 Arginine repressor C-terminal-like domain Gferi_RS13530 7f5e26f302debf1762148ec104eddafa 246 Gene3D G3DSA:2.40.100.10 92 230 1.9E-56 T 11-11-2016 IPR029000 Cyclophilin-like domain Gferi_RS13530 7f5e26f302debf1762148ec104eddafa 246 SUPERFAMILY SSF50891 92 222 3.57E-48 T 11-11-2016 IPR029000 Cyclophilin-like domain Gferi_RS15070 4df4018effbe17df20fd4a96fe73c1e0 617 SMART SM00534 423 608 1.8E-12 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS15070 4df4018effbe17df20fd4a96fe73c1e0 617 SUPERFAMILY SSF48334 128 239 1.44E-9 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS15070 4df4018effbe17df20fd4a96fe73c1e0 617 Gene3D G3DSA:1.10.1420.10 123 259 1.6E-10 T 11-11-2016 Gferi_RS15070 4df4018effbe17df20fd4a96fe73c1e0 617 Pfam PF00488 MutS domain V 427 598 6.0E-28 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS15070 4df4018effbe17df20fd4a96fe73c1e0 617 Gene3D G3DSA:3.40.50.300 386 599 4.1E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15070 4df4018effbe17df20fd4a96fe73c1e0 617 SUPERFAMILY SSF52540 386 600 1.74E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15070 4df4018effbe17df20fd4a96fe73c1e0 617 Pfam PF05192 MutS domain III 126 236 4.8E-8 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS14110 5999ffbda01ee84fb6e5e3a207fba745 284 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 41 267 2.6E-18 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Gferi_RS14110 5999ffbda01ee84fb6e5e3a207fba745 284 SUPERFAMILY SSF102705 40 268 5.62E-29 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Gferi_RS14110 5999ffbda01ee84fb6e5e3a207fba745 284 Gene3D G3DSA:3.40.1390.30 41 131 1.3E-5 T 11-11-2016 Gferi_RS14110 5999ffbda01ee84fb6e5e3a207fba745 284 Gene3D G3DSA:3.40.1390.30 208 263 1.2E-4 T 11-11-2016 Gferi_RS14110 5999ffbda01ee84fb6e5e3a207fba745 284 Gene3D G3DSA:3.40.1390.30 132 207 3.1E-6 T 11-11-2016 Gferi_RS17580 46e226655223c1af62cbbd4d0303a1ca 204 Pfam PF00881 Nitroreductase family 7 180 1.6E-17 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS17580 46e226655223c1af62cbbd4d0303a1ca 204 SUPERFAMILY SSF55469 94 204 4.19E-24 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS17580 46e226655223c1af62cbbd4d0303a1ca 204 SUPERFAMILY SSF55469 1 63 4.19E-24 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS17580 46e226655223c1af62cbbd4d0303a1ca 204 Gene3D G3DSA:3.40.109.10 1 203 5.0E-28 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS24455 29a865a884c2ae5f132b938afc35f4a5 345 SUPERFAMILY SSF46785 26 90 1.58E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24455 29a865a884c2ae5f132b938afc35f4a5 345 Gene3D G3DSA:3.40.50.1360 102 345 2.0E-81 T 11-11-2016 Gferi_RS24455 29a865a884c2ae5f132b938afc35f4a5 345 Pfam PF04198 Putative sugar-binding domain 96 345 3.1E-63 T 11-11-2016 IPR007324 Sugar-binding domain, putative GO:0030246 Gferi_RS24455 29a865a884c2ae5f132b938afc35f4a5 345 Gene3D G3DSA:1.10.10.10 8 100 1.9E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24455 29a865a884c2ae5f132b938afc35f4a5 345 SUPERFAMILY SSF100950 102 345 5.02E-64 T 11-11-2016 Gferi_RS02750 642c826863257040781101fe1f89771f 279 SMART SM00849 21 196 0.0017 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02750 642c826863257040781101fe1f89771f 279 SUPERFAMILY SSF56281 7 259 7.99E-30 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02750 642c826863257040781101fe1f89771f 279 Pfam PF00753 Metallo-beta-lactamase superfamily 20 91 9.8E-17 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02750 642c826863257040781101fe1f89771f 279 Gene3D G3DSA:3.60.15.10 23 262 9.2E-27 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 Gene3D G3DSA:1.10.1670.10 131 216 1.0E-38 T 11-11-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 Pfam PF00633 Helix-hairpin-helix motif 107 135 6.4E-9 T 11-11-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 195 211 - T 11-11-2016 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 42 176 9.6E-26 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 Gene3D G3DSA:1.10.340.30 31 130 2.8E-39 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 195 211 1.6E-4 T 11-11-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 PIRSF PIRSF001435 6 220 6.9E-66 T 11-11-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 SMART SM00525 194 214 1.2E-6 T 11-11-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 ProSitePatterns PS01155 Endonuclease III family signature. 110 139 - T 11-11-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 Hamap MF_00942 Endonuclease III [nth]. 1 217 39.599 T 11-11-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 SUPERFAMILY SSF48150 10 216 3.3E-77 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 TIGRFAM TIGR01083 nth: endonuclease III 11 202 9.5E-88 T 11-11-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 Gferi_RS24155 5e5676d325df5850fca18f6c5c448573 221 SMART SM00478 46 193 1.1E-61 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Gferi_RS09885 9c10346c8625f6deb6604e4d31dd87df 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 37 167 2.5E-41 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 SMART SM00919 160 383 1.0E-125 T 11-11-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 ProSitePatterns PS00331 Malic enzymes signature. 156 172 - T 11-11-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 Pfam PF00390 Malic enzyme, N-terminal domain 16 148 2.3E-30 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 Pfam PF03949 Malic enzyme, NAD binding domain 162 288 6.1E-13 T 11-11-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 Pfam PF03949 Malic enzyme, NAD binding domain 306 382 1.2E-11 T 11-11-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 Gene3D G3DSA:3.40.50.10380 7 157 4.7E-56 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 SMART SM01274 15 148 1.6E-87 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 SUPERFAMILY SSF53223 10 158 5.61E-58 T 11-11-2016 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 PIRSF PIRSF000106 29 390 6.8E-86 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 SUPERFAMILY SSF51735 160 389 1.03E-77 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25295 397afaf4c64f3a4a17f9b730d9efa042 390 Gene3D G3DSA:3.40.50.720 158 389 1.7E-81 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 Gene3D G3DSA:3.30.499.10 269 422 2.0E-53 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 4 412 4.3E-153 T 11-11-2016 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 Gene3D G3DSA:3.30.499.10 4 156 1.4E-30 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 Gene3D G3DSA:3.40.1060.10 157 259 2.1E-30 T 11-11-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 5 411 6.3E-157 T 11-11-2016 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 SUPERFAMILY SSF53732 5 417 3.92E-132 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 PRINTS PR00415 Aconitase family signature 200 213 4.2E-18 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 PRINTS PR00415 Aconitase family signature 124 139 4.2E-18 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 PRINTS PR00415 Aconitase family signature 347 360 4.2E-18 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 PRINTS PR00415 Aconitase family signature 110 123 4.2E-18 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 PRINTS PR00415 Aconitase family signature 186 199 4.2E-18 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 1 414 44.267 T 11-11-2016 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 ProSitePatterns PS01244 Aconitase family signature 2. 347 360 - T 11-11-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Gferi_RS18210 905cd529c10dc5da4c72a3aa13438f25 423 Pfam PF00330 Aconitase family (aconitate hydratase) 45 406 1.5E-91 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS09850 984980f3c489fd863efee2d2fce0ab89 554 Gene3D G3DSA:1.20.1560.10 27 325 5.1E-37 T 11-11-2016 Gferi_RS09850 984980f3c489fd863efee2d2fce0ab89 554 SUPERFAMILY SSF52540 339 550 5.84E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09850 984980f3c489fd863efee2d2fce0ab89 554 Gene3D G3DSA:3.40.50.300 341 550 1.1E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09850 984980f3c489fd863efee2d2fce0ab89 554 ProSitePatterns PS00211 ABC transporters family signature. 478 492 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09850 984980f3c489fd863efee2d2fce0ab89 554 Pfam PF00664 ABC transporter transmembrane region 29 289 5.5E-23 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS09850 984980f3c489fd863efee2d2fce0ab89 554 SMART SM00382 366 552 6.9E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09850 984980f3c489fd863efee2d2fce0ab89 554 SUPERFAMILY SSF90123 12 326 3.4E-46 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS09850 984980f3c489fd863efee2d2fce0ab89 554 Pfam PF00005 ABC transporter 357 506 3.2E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS24375 b2bdb9224a9924233ab93e3ce8b284fd 282 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 4 279 2.2E-96 T 11-11-2016 IPR003797 DegV Gferi_RS24375 b2bdb9224a9924233ab93e3ce8b284fd 282 Gene3D G3DSA:3.30.1180.10 153 280 2.3E-41 T 11-11-2016 Gferi_RS24375 b2bdb9224a9924233ab93e3ce8b284fd 282 Gene3D G3DSA:3.40.50.10170 3 151 6.1E-49 T 11-11-2016 Gferi_RS24375 b2bdb9224a9924233ab93e3ce8b284fd 282 SUPERFAMILY SSF82549 4 280 4.19E-82 T 11-11-2016 Gferi_RS24375 b2bdb9224a9924233ab93e3ce8b284fd 282 Pfam PF02645 Uncharacterised protein, DegV family COG1307 4 279 2.1E-90 T 11-11-2016 IPR003797 DegV Gferi_RS17520 db5adbd8e0482c1693f25451299e0912 37 Pfam PF00444 Ribosomal protein L36 2 37 6.0E-18 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17520 db5adbd8e0482c1693f25451299e0912 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 2 37 5.2E-23 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17520 db5adbd8e0482c1693f25451299e0912 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 16.829 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17520 db5adbd8e0482c1693f25451299e0912 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17520 db5adbd8e0482c1693f25451299e0912 37 SUPERFAMILY SSF57840 2 37 4.45E-16 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17520 db5adbd8e0482c1693f25451299e0912 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 4.0E-8 T 11-11-2016 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 SUPERFAMILY SSF53067 119 346 6.82E-53 T 11-11-2016 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 7 353 1.6E-159 T 11-11-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 PRINTS PR00471 Acetate kinase family signature 297 313 1.8E-17 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 PRINTS PR00471 Acetate kinase family signature 6 17 1.8E-17 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 PRINTS PR00471 Acetate kinase family signature 274 287 1.8E-17 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 PRINTS PR00471 Acetate kinase family signature 180 201 1.8E-17 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 Gene3D G3DSA:3.30.420.40 7 181 1.2E-76 T 11-11-2016 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 SUPERFAMILY SSF53067 6 173 6.74E-66 T 11-11-2016 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 Pfam PF00871 Acetokinase family 7 329 4.0E-68 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 PIRSF PIRSF036458 2 356 4.4E-157 T 11-11-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 Gene3D G3DSA:3.30.420.40 182 340 4.0E-47 T 11-11-2016 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 Hamap MF_00542 Probable butyrate kinase [buk]. 1 360 157.381 T 11-11-2016 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Gferi_RS18810 48b8423594be9069531f4aa4b6a48b84 360 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 11-11-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Gferi_RS22205 6e5908ec7cd16b3d68ea8cace40dc515 579 Gene3D G3DSA:1.10.599.10 380 578 6.8E-48 T 11-11-2016 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 Gferi_RS22205 6e5908ec7cd16b3d68ea8cace40dc515 579 Gene3D G3DSA:3.60.9.10 2 208 2.9E-61 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS22205 6e5908ec7cd16b3d68ea8cace40dc515 579 SUPERFAMILY SSF56228 2 208 3.92E-50 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS22205 6e5908ec7cd16b3d68ea8cace40dc515 579 SUPERFAMILY SSF48310 214 569 7.59E-95 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS22205 6e5908ec7cd16b3d68ea8cace40dc515 579 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 3 206 1.1E-56 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS22205 6e5908ec7cd16b3d68ea8cace40dc515 579 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 227 559 1.2E-68 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS22205 6e5908ec7cd16b3d68ea8cace40dc515 579 SMART SM00790 2 208 6.1E-75 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS07845 b3446f4484b90128760a14a65c6afe93 344 Gene3D G3DSA:1.10.3470.10 17 339 1.2E-76 T 11-11-2016 IPR029022 ABC transporter, BtuC-like Gferi_RS07845 b3446f4484b90128760a14a65c6afe93 344 SUPERFAMILY SSF81345 13 336 2.75E-60 T 11-11-2016 IPR029022 ABC transporter, BtuC-like Gferi_RS07845 b3446f4484b90128760a14a65c6afe93 344 Pfam PF01032 FecCD transport family 30 336 7.3E-71 T 11-11-2016 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 SUPERFAMILY SSF54686 1 138 1.22E-59 T 11-11-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 11-11-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 11-11-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 5.5E-61 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 Gene3D G3DSA:3.90.1170.10 23 137 9.0E-58 T 11-11-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 41.063 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 PRINTS PR00060 Ribosomal protein L16 signature 58 87 4.4E-39 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 PRINTS PR00060 Ribosomal protein L16 signature 88 117 4.4E-39 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 PRINTS PR00060 Ribosomal protein L16 signature 24 36 4.4E-39 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 PRINTS PR00060 Ribosomal protein L16 signature 42 53 4.4E-39 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17430 88a92fb588258f244f5d94c5cf00b093 147 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 1.2E-51 T 11-11-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 Gene3D G3DSA:3.20.20.10 16 228 2.0E-75 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 38 48 - T 11-11-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 SUPERFAMILY SSF50621 242 385 2.44E-52 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 SUPERFAMILY SSF51419 14 250 7.1E-64 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 Pfam PF00842 Alanine racemase, C-terminal domain 249 376 2.0E-43 T 11-11-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 TIGRFAM TIGR00492 alr: alanine racemase 8 377 1.7E-123 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 SMART SM01005 249 377 2.2E-70 T 11-11-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 33 49 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 130 142 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 303 320 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 359 372 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 165 176 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 69 87 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 265 280 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 208 235 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 PRINTS PR00992 Alanine racemase signature 282 297 1.4E-58 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 Gene3D G3DSA:2.40.37.10 229 385 3.5E-63 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 Hamap MF_01201 Alanine racemase. 7 377 34.498 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20480 caccfd3cc5f06fa990723ce9b8966ac7 391 Pfam PF01168 Alanine racemase, N-terminal domain 14 235 1.6E-67 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 SUPERFAMILY SSF51735 136 302 8.28E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 142 350 4.4E-55 T 11-11-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 Gene3D G3DSA:3.40.50.720 179 257 2.5E-9 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 1.2E-39 T 11-11-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 SMART SM01003 4 136 1.6E-58 T 11-11-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 SMART SM01002 148 296 8.5E-44 T 11-11-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 SUPERFAMILY SSF52283 1 136 4.93E-54 T 11-11-2016 Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 SUPERFAMILY SSF52283 304 354 4.93E-54 T 11-11-2016 Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 Gene3D G3DSA:3.40.50.1770 258 347 1.8E-13 T 11-11-2016 Gferi_RS06235 db9701c3ad1729088bbf40bd890f1633 373 Gene3D G3DSA:3.40.50.1770 3 178 2.2E-52 T 11-11-2016 Gferi_RS22130 13f96cfd44cbb7aa52f7c0949cebeab3 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 287 5.3E-13 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22130 13f96cfd44cbb7aa52f7c0949cebeab3 302 SUPERFAMILY SSF161098 12 302 7.48E-54 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22130 13f96cfd44cbb7aa52f7c0949cebeab3 302 Gene3D G3DSA:1.10.3720.10 7 285 1.0E-52 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 SUPERFAMILY SSF46785 1 87 4.99E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.7E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 SUPERFAMILY SSF53850 104 294 5.13E-17 T 11-11-2016 Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 Gene3D G3DSA:3.40.190.10 81 190 1.4E-7 T 11-11-2016 Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 Gene3D G3DSA:1.10.10.10 1 80 4.9E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 Gene3D G3DSA:3.40.190.10 191 249 5.0E-9 T 11-11-2016 Gferi_RS19410 5c2a93e829cc35370d3310728e658427 296 Pfam PF03466 LysR substrate binding domain 92 292 5.2E-16 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS07425 e135a92ab63b4b151cd1ed0c9b0aacf5 153 Gene3D G3DSA:2.40.440.10 12 100 1.4E-28 T 11-11-2016 Gferi_RS07425 e135a92ab63b4b151cd1ed0c9b0aacf5 153 Pfam PF03734 L,D-transpeptidase catalytic domain 10 99 1.4E-15 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS07425 e135a92ab63b4b151cd1ed0c9b0aacf5 153 Gene3D G3DSA:3.10.350.10 107 153 7.8E-15 T 11-11-2016 IPR018392 LysM domain Gferi_RS07425 e135a92ab63b4b151cd1ed0c9b0aacf5 153 Pfam PF01476 LysM domain 109 153 1.1E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS07425 e135a92ab63b4b151cd1ed0c9b0aacf5 153 SUPERFAMILY SSF54106 107 153 8.11E-10 T 11-11-2016 IPR018392 LysM domain Gferi_RS07425 e135a92ab63b4b151cd1ed0c9b0aacf5 153 SUPERFAMILY SSF141523 10 100 5.1E-27 T 11-11-2016 Gferi_RS07425 e135a92ab63b4b151cd1ed0c9b0aacf5 153 SMART SM00257 108 153 1.7E-9 T 11-11-2016 IPR018392 LysM domain Gferi_RS07585 5d2ce458e11e3d81489719986f4fb2b9 217 Pfam PF00072 Response regulator receiver domain 4 109 2.7E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07585 5d2ce458e11e3d81489719986f4fb2b9 217 SUPERFAMILY SSF46894 114 214 5.53E-30 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS07585 5d2ce458e11e3d81489719986f4fb2b9 217 SUPERFAMILY SSF52172 2 121 1.71E-35 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS07585 5d2ce458e11e3d81489719986f4fb2b9 217 Pfam PF00486 Transcriptional regulatory protein, C terminal 142 213 3.9E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07585 5d2ce458e11e3d81489719986f4fb2b9 217 Gene3D G3DSA:1.10.10.10 119 215 4.1E-32 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07585 5d2ce458e11e3d81489719986f4fb2b9 217 SMART SM00448 2 109 3.0E-36 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07585 5d2ce458e11e3d81489719986f4fb2b9 217 Gene3D G3DSA:3.40.50.2300 2 118 1.9E-35 T 11-11-2016 Gferi_RS07585 5d2ce458e11e3d81489719986f4fb2b9 217 SMART SM00862 141 213 1.1E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS22815 e923d42124323725c1ee9ffa76e57e21 241 SUPERFAMILY SSF69318 18 202 3.4E-12 T 11-11-2016 Gferi_RS08380 178f4fb399ed6602c21e7695d1fbb371 407 Pfam PF07690 Major Facilitator Superfamily 47 321 9.3E-9 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS08380 178f4fb399ed6602c21e7695d1fbb371 407 Gene3D G3DSA:1.20.1250.20 197 397 9.6E-13 T 11-11-2016 Gferi_RS08380 178f4fb399ed6602c21e7695d1fbb371 407 Gene3D G3DSA:1.20.1250.20 2 188 4.6E-12 T 11-11-2016 Gferi_RS08380 178f4fb399ed6602c21e7695d1fbb371 407 SUPERFAMILY SSF103473 2 396 3.01E-24 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 Gene3D G3DSA:3.40.50.720 1 185 2.6E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 Gene3D G3DSA:1.10.1040.10 186 284 2.8E-13 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 Gene3D G3DSA:1.10.1040.10 354 407 6.9E-10 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 SUPERFAMILY SSF52096 444 752 1.58E-40 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 Gene3D G3DSA:3.90.226.10 445 590 1.0E-29 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 SUPERFAMILY SSF48179 343 425 2.21E-11 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 SUPERFAMILY SSF48179 183 290 5.7E-17 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 1 181 2.0E-40 T 11-11-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 SUPERFAMILY SSF51735 1 183 1.12E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 Pfam PF00378 Enoyl-CoA hydratase/isomerase 450 588 5.5E-19 T 11-11-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 364 404 1.8E-4 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS18175 9851cabdccf5400054cce4d909ddbd6e 757 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 185 284 5.4E-10 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS21165 b192feb217ff9846bed09725a1b056a0 163 Pfam PF01584 CheW-like domain 13 143 8.7E-19 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS21165 b192feb217ff9846bed09725a1b056a0 163 SUPERFAMILY SSF50341 9 145 5.89E-22 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS21165 b192feb217ff9846bed09725a1b056a0 163 SMART SM00260 8 144 2.1E-4 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS02365 af3dddbfa693fa7178e8f33a5deb1459 379 Pfam PF04055 Radical SAM superfamily 8 177 1.3E-23 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS02365 af3dddbfa693fa7178e8f33a5deb1459 379 SUPERFAMILY SSF102114 4 377 8.5E-120 T 11-11-2016 Gferi_RS02365 af3dddbfa693fa7178e8f33a5deb1459 379 Gene3D G3DSA:3.80.30.20 6 239 1.3E-43 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS02365 af3dddbfa693fa7178e8f33a5deb1459 379 SMART SM00729 3 223 8.7E-58 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS02365 af3dddbfa693fa7178e8f33a5deb1459 379 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 6 355 4.7E-99 T 11-11-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 Gferi_RS02365 af3dddbfa693fa7178e8f33a5deb1459 379 Pfam PF06969 HemN C-terminal domain 303 366 1.1E-18 T 11-11-2016 IPR010723 HemN, C-terminal Gferi_RS08745 3904daa0989ea72d865eaa96227b418f 545 Gene3D G3DSA:3.40.190.10 158 309 2.6E-49 T 11-11-2016 Gferi_RS08745 3904daa0989ea72d865eaa96227b418f 545 SUPERFAMILY SSF53850 39 539 1.16E-132 T 11-11-2016 Gferi_RS08745 3904daa0989ea72d865eaa96227b418f 545 Gene3D G3DSA:3.10.105.10 310 515 4.5E-62 T 11-11-2016 Gferi_RS08745 3904daa0989ea72d865eaa96227b418f 545 PIRSF PIRSF002741 5 543 1.8E-119 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS08745 3904daa0989ea72d865eaa96227b418f 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 468 5.9E-93 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS16390 c6f7a4f2bffc782871ccb21301e3e659 212 Pfam PF02607 B12 binding domain 5 79 2.7E-13 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16390 c6f7a4f2bffc782871ccb21301e3e659 212 Gene3D G3DSA:1.10.1240.10 5 77 2.5E-11 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16390 c6f7a4f2bffc782871ccb21301e3e659 212 Gene3D G3DSA:3.40.50.280 78 212 2.6E-47 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16390 c6f7a4f2bffc782871ccb21301e3e659 212 SMART SM01018 1 86 6.4E-20 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16390 c6f7a4f2bffc782871ccb21301e3e659 212 SUPERFAMILY SSF47644 3 84 1.96E-17 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16390 c6f7a4f2bffc782871ccb21301e3e659 212 SUPERFAMILY SSF52242 73 212 7.46E-41 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16390 c6f7a4f2bffc782871ccb21301e3e659 212 Pfam PF02310 B12 binding domain 92 195 9.0E-22 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS21035 2a7ade6962d10e72bd1e37cfd6d3815d 236 Gene3D G3DSA:1.10.10.10 135 235 8.6E-32 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21035 2a7ade6962d10e72bd1e37cfd6d3815d 236 SUPERFAMILY SSF52172 3 128 1.85E-38 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS21035 2a7ade6962d10e72bd1e37cfd6d3815d 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 234 7.7E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS21035 2a7ade6962d10e72bd1e37cfd6d3815d 236 Pfam PF00072 Response regulator receiver domain 7 116 5.8E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21035 2a7ade6962d10e72bd1e37cfd6d3815d 236 Gene3D G3DSA:3.40.50.2300 2 124 2.8E-37 T 11-11-2016 Gferi_RS21035 2a7ade6962d10e72bd1e37cfd6d3815d 236 SMART SM00862 158 234 5.1E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS21035 2a7ade6962d10e72bd1e37cfd6d3815d 236 SMART SM00448 5 115 1.8E-37 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21035 2a7ade6962d10e72bd1e37cfd6d3815d 236 SUPERFAMILY SSF46894 136 235 3.97E-28 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 444 50.678 T 11-11-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 12 441 4.2E-179 T 11-11-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 SUPERFAMILY SSF53383 7 443 1.51E-131 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 PIRSF PIRSF000521 27 444 4.4E-39 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 Gene3D G3DSA:3.40.640.10 63 339 2.9E-96 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 249 286 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 Pfam PF00202 Aminotransferase class-III 23 441 1.1E-134 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 Gene3D G3DSA:3.90.1150.10 2 62 4.6E-53 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS16125 37d67f474934880aafc8ea612e34ae60 448 Gene3D G3DSA:3.90.1150.10 341 444 4.6E-53 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Pfam PF00682 HMGL-like 530 802 9.8E-33 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Pfam PF02436 Conserved carboxylase domain 824 1024 4.3E-73 T 11-11-2016 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Gene3D G3DSA:3.40.50.20 5 133 3.8E-52 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 119 326 1.6E-76 T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Gene3D G3DSA:3.30.470.20 207 458 2.5E-94 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 SUPERFAMILY SSF89000 829 1005 1.8E-55 T 11-11-2016 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 SUPERFAMILY SSF51246 340 459 6.28E-33 T 11-11-2016 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Gene3D G3DSA:1.10.10.60 948 983 6.3E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 SUPERFAMILY SSF51230 1067 1142 2.49E-21 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 157 171 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1099 1116 - T 11-11-2016 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 SMART SM00878 346 453 1.3E-43 T 11-11-2016 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 7 1142 0.0 T 11-11-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Pfam PF00364 Biotin-requiring enzyme 1077 1142 1.0E-19 T 11-11-2016 IPR000089 Biotin/lipoyl attachment Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 SUPERFAMILY SSF52440 3 117 1.37E-45 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 PIRSF PIRSF001594 1 1144 0.0 T 11-11-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Gene3D G3DSA:2.40.50.100 1068 1143 1.4E-25 T 11-11-2016 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Pfam PF02785 Biotin carboxylase C-terminal domain 346 453 2.4E-27 T 11-11-2016 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Gene3D G3DSA:3.30.1490.20 134 206 3.3E-27 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 SUPERFAMILY SSF56059 87 358 3.71E-65 T 11-11-2016 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Gene3D G3DSA:3.20.20.70 506 814 1.3E-133 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Gene3D G3DSA:3.10.600.10 984 1060 3.8E-29 T 11-11-2016 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 SUPERFAMILY SSF51569 521 832 8.42E-81 T 11-11-2016 Gferi_RS17640 f9b0925576f2546bc3133bac1bc0eecf 1144 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 114 1.1E-43 T 11-11-2016 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS06515 1596e86cc8cba280c161f00adf8ff831 124 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 1.8E-13 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS06515 1596e86cc8cba280c161f00adf8ff831 124 Gene3D G3DSA:1.10.10.10 2 72 7.3E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06515 1596e86cc8cba280c161f00adf8ff831 124 SMART SM00345 13 72 4.9E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS06515 1596e86cc8cba280c161f00adf8ff831 124 SUPERFAMILY SSF46785 2 90 5.94E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 SUPERFAMILY SSF55785 2 119 2.62E-22 T 11-11-2016 IPR000014 PAS domain Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 Gene3D G3DSA:3.30.450.20 7 145 1.7E-27 T 11-11-2016 Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 Pfam PF00989 PAS fold 9 115 1.5E-8 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 SMART SM00091 9 75 1.0E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 302 2.6E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 358 2.6E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 PRINTS PR00344 Bacterial sensor protein C-terminal signature 321 339 2.6E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 6 128 2.2E-21 T 11-11-2016 IPR000014 PAS domain Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 Gene3D G3DSA:3.30.565.10 215 358 1.2E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 Gene3D G3DSA:1.10.287.130 146 205 1.3E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 SMART SM00387 250 361 6.4E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 250 358 5.7E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 SUPERFAMILY SSF47384 127 208 2.16E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 SUPERFAMILY SSF55874 198 359 7.73E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 Pfam PF00512 His Kinase A (phospho-acceptor) domain 142 207 1.6E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS17075 089c683bfd01165bb1e74c884ce7faa9 363 SMART SM00388 141 209 2.1E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24140 de7bb8590e6c7e94602c110743885ca8 359 Gene3D G3DSA:3.30.230.10 128 324 1.2E-27 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS24140 de7bb8590e6c7e94602c110743885ca8 359 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 218 321 6.3E-8 T 11-11-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 Gferi_RS24140 de7bb8590e6c7e94602c110743885ca8 359 SUPERFAMILY SSF54211 132 325 1.29E-32 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS24140 de7bb8590e6c7e94602c110743885ca8 359 Pfam PF13654 AAA domain 2 108 7.4E-38 T 11-11-2016 Gferi_RS24140 de7bb8590e6c7e94602c110743885ca8 359 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 134 150 6.1E-12 T 11-11-2016 Gferi_RS24140 de7bb8590e6c7e94602c110743885ca8 359 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 275 293 6.1E-12 T 11-11-2016 Gferi_RS24140 de7bb8590e6c7e94602c110743885ca8 359 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 215 234 6.1E-12 T 11-11-2016 Gferi_RS24140 de7bb8590e6c7e94602c110743885ca8 359 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 245 264 6.1E-12 T 11-11-2016 Gferi_RS23360 d9b279bea4134eb35376c080f41b0b2b 64 SUPERFAMILY SSF47413 5 63 2.12E-15 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS23360 d9b279bea4134eb35376c080f41b0b2b 64 SMART SM00530 10 62 8.9E-9 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS23360 d9b279bea4134eb35376c080f41b0b2b 64 Pfam PF01381 Helix-turn-helix 11 64 2.9E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS23360 d9b279bea4134eb35376c080f41b0b2b 64 Gene3D G3DSA:1.10.260.40 7 63 6.3E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 Gene3D G3DSA:1.10.3850.10 793 1005 6.8E-58 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 Gene3D G3DSA:3.30.2090.10 706 787 1.2E-8 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 Gene3D G3DSA:3.30.2090.10 181 265 1.3E-15 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.6E-26 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 PRINTS PR00702 Acriflavin resistance protein family signature 534 551 1.6E-26 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.6E-26 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.6E-26 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.6E-26 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.6E-26 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.6E-26 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 SUPERFAMILY SSF82866 294 488 3.01E-38 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 SUPERFAMILY SSF82714 181 265 6.41E-15 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 SUPERFAMILY SSF82866 785 1006 2.35E-49 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 SUPERFAMILY SSF82714 705 787 9.81E-9 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 SUPERFAMILY SSF82693 268 315 1.88E-8 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 SUPERFAMILY SSF82693 138 180 1.88E-8 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 Gene3D G3DSA:1.20.1640.10 303 497 6.7E-46 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 SUPERFAMILY SSF82693 43 129 4.55E-20 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 Gene3D G3DSA:3.30.70.1320 269 302 7.5E-7 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 Gene3D G3DSA:3.30.70.1320 144 177 7.5E-7 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 Gene3D G3DSA:3.30.70.1430 43 132 2.9E-24 T 11-11-2016 Gferi_RS16010 473fe1e6f6f54833592c41b6175afde6 1016 Pfam PF00873 AcrB/AcrD/AcrF family 5 1004 1.4E-179 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS11560 d5ef83172c3d611beb4cddcb515b28f3 453 TIGRFAM TIGR02889 spore_YpeB: germination protein YpeB 4 442 1.1E-132 T 11-11-2016 IPR014239 Spore germination YpeB GO:0009847 Gferi_RS11560 d5ef83172c3d611beb4cddcb515b28f3 453 Pfam PF14620 YpeB sporulation 12 375 5.8E-119 T 11-11-2016 IPR014239 Spore germination YpeB GO:0009847 Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 TIGRFAM TIGR00436 era: GTP-binding protein Era 6 277 7.2E-97 T 11-11-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 SUPERFAMILY SSF52540 8 201 4.28E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 Hamap MF_00367 GTPase Era [era]. 3 294 38.349 T 11-11-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 Pfam PF01926 50S ribosome-binding GTPase 8 122 4.1E-26 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 Gene3D G3DSA:3.30.300.20 189 290 3.0E-42 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 Gene3D G3DSA:3.40.50.300 6 188 4.9E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 Pfam PF07650 KH domain 205 283 7.7E-19 T 11-11-2016 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 SUPERFAMILY SSF54814 179 295 6.54E-42 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 Gferi_RS02240 706b242f305d80cda67bdecdf2935be4 295 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 165 1.8E-30 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS06485 1fea325b43422e82f9047a334ee20427 165 Pfam PF00293 NUDIX domain 39 156 2.9E-18 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS06485 1fea325b43422e82f9047a334ee20427 165 SUPERFAMILY SSF55811 5 160 7.31E-33 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS06485 1fea325b43422e82f9047a334ee20427 165 Gene3D G3DSA:3.90.79.10 36 160 6.7E-30 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS06485 1fea325b43422e82f9047a334ee20427 165 ProSitePatterns PS00893 Nudix box signature. 69 90 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS12005 21386950b48d0038aebf6ca70603882d 205 SUPERFAMILY SSF55811 22 195 3.93E-30 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS12005 21386950b48d0038aebf6ca70603882d 205 Gene3D G3DSA:3.90.79.10 54 190 1.4E-27 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS12005 21386950b48d0038aebf6ca70603882d 205 Pfam PF00293 NUDIX domain 69 177 3.4E-12 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS12005 21386950b48d0038aebf6ca70603882d 205 Pfam PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal 5 58 7.3E-24 T 11-11-2016 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 400 9.3E-23 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 13 457 4.9E-158 T 11-11-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 Gene3D G3DSA:3.40.1190.10 100 318 3.4E-78 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 Gene3D G3DSA:3.40.50.720 12 98 2.3E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 Gene3D G3DSA:3.90.190.20 319 459 5.5E-55 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 SUPERFAMILY SSF53244 316 458 2.62E-46 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 SUPERFAMILY SSF53623 97 315 1.23E-65 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 Pfam PF08245 Mur ligase middle domain 117 297 1.9E-36 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 SUPERFAMILY SSF51984 12 98 1.7E-28 T 11-11-2016 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 11 461 40.083 T 11-11-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS16710 e06d5ef5ad5ed2f516556664d1bb0c34 461 Pfam PF01225 Mur ligase family, catalytic domain 13 111 4.4E-27 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 PIRSF PIRSF000130 1 486 2.5E-212 T 11-11-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 SUPERFAMILY SSF54631 66 205 6.44E-29 T 11-11-2016 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 471 9.2E-167 T 11-11-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 9 453 1.4E-197 T 11-11-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 11-11-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 SMART SM00116 158 206 1.1E-8 T 11-11-2016 IPR000644 CBS domain Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 SMART SM00116 97 145 7.4E-8 T 11-11-2016 IPR000644 CBS domain Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 Pfam PF00571 CBS domain 151 201 1.7E-7 T 11-11-2016 IPR000644 CBS domain Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 Pfam PF00571 CBS domain 97 141 6.3E-9 T 11-11-2016 IPR000644 CBS domain Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 9 484 86.943 T 11-11-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 SMART SM01240 8 471 0.0 T 11-11-2016 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 SUPERFAMILY SSF51412 5 91 1.96E-127 T 11-11-2016 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 SUPERFAMILY SSF51412 217 475 1.96E-127 T 11-11-2016 Gferi_RS10210 910378e1dda2b97e614d67f1db479e40 486 Gene3D G3DSA:3.20.20.70 6 483 1.4E-204 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS04865 14df35cb6477b612ec8f0abaf19207c3 191 Pfam PF13302 Acetyltransferase (GNAT) domain 7 151 4.8E-16 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS04865 14df35cb6477b612ec8f0abaf19207c3 191 SUPERFAMILY SSF55729 2 159 1.18E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS04865 14df35cb6477b612ec8f0abaf19207c3 191 Gene3D G3DSA:3.40.630.30 1 158 8.1E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 7 306 1.8E-106 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 265 270 7.3E-37 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 40 62 7.3E-37 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 287 301 7.3E-37 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 133 150 7.3E-37 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 7.3E-37 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 7.3E-37 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 50 57 - T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 271 294 1.2E-24 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 1.2E-24 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 261 270 1.2E-24 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 50 69 1.2E-24 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 SUPERFAMILY SSF53671 3 306 1.27E-96 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 Gene3D G3DSA:3.40.50.1370 7 144 3.2E-52 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 5.5E-31 T 11-11-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 Gene3D G3DSA:3.40.50.1370 145 292 8.6E-52 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 146 1.3E-43 T 11-11-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Gferi_RS18465 b2b38c19c89846fbc57f82cdb4b67848 309 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 6 308 36.255 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 SUPERFAMILY SSF55073 563 711 3.06E-33 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Pfam PF00990 Diguanylate cyclase, GGDEF domain 559 711 2.8E-35 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 SUPERFAMILY SSF53850 54 257 6.92E-33 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Gene3D G3DSA:3.30.70.270 559 711 9.1E-38 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 52 256 5.4E-26 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 294 488 3.1E-29 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 SMART SM00062 290 505 7.1E-15 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 SMART SM00062 50 271 1.5E-18 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Gene3D G3DSA:3.40.190.10 365 451 1.8E-10 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Gene3D G3DSA:3.40.190.10 127 205 2.9E-7 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 SUPERFAMILY SSF53850 283 499 1.06E-31 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 SMART SM00267 547 714 1.4E-26 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Gene3D G3DSA:3.40.190.10 49 126 2.7E-14 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Gene3D G3DSA:3.40.190.10 289 364 8.1E-16 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Gene3D G3DSA:3.40.190.10 230 257 2.7E-14 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 Gene3D G3DSA:3.40.190.10 467 490 8.1E-16 T 11-11-2016 Gferi_RS15250 26b1fd5e7c8bc76832bae5edc6fa1b7a 714 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 558 712 1.7E-32 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS06795 99eacf725ac523aa5b68be215c8e2208 413 Gene3D G3DSA:1.10.3720.10 178 406 1.1E-60 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06795 99eacf725ac523aa5b68be215c8e2208 413 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 204 404 4.3E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06795 99eacf725ac523aa5b68be215c8e2208 413 SUPERFAMILY SSF160964 11 143 3.53E-6 T 11-11-2016 Gferi_RS06795 99eacf725ac523aa5b68be215c8e2208 413 SUPERFAMILY SSF161098 172 400 6.8E-58 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS12620 53d0655b9d906ca07443e6a7f781062b 380 SUPERFAMILY SSF75304 102 342 1.05E-14 T 11-11-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Gferi_RS12620 53d0655b9d906ca07443e6a7f781062b 380 Gene3D G3DSA:3.90.1300.10 102 234 9.0E-14 T 11-11-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Gferi_RS12620 53d0655b9d906ca07443e6a7f781062b 380 Pfam PF01425 Amidase 103 166 4.1E-7 T 11-11-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Gferi_RS16850 c1f074026f2fc85146fe45a2c51fbe95 124 Pfam PF03061 Thioesterase superfamily 46 98 3.2E-4 T 11-11-2016 IPR006683 Thioesterase domain Reactome: R-HSA-75105 Gferi_RS16850 c1f074026f2fc85146fe45a2c51fbe95 124 Gene3D G3DSA:3.10.129.10 1 123 4.2E-49 T 11-11-2016 IPR029069 HotDog domain Gferi_RS16850 c1f074026f2fc85146fe45a2c51fbe95 124 PIRSF PIRSF014972 1 124 3.7E-46 T 11-11-2016 IPR025540 Fluoroacetyl-CoA thioesterase Gferi_RS16850 c1f074026f2fc85146fe45a2c51fbe95 124 SUPERFAMILY SSF54637 1 116 6.35E-44 T 11-11-2016 IPR029069 HotDog domain Gferi_RS10060 386d1aa55556402ffca4c8073d2cdc56 174 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 159 6.9E-66 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS10060 386d1aa55556402ffca4c8073d2cdc56 174 Gene3D G3DSA:3.40.50.7700 2 161 9.9E-74 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS10060 386d1aa55556402ffca4c8073d2cdc56 174 PIRSF PIRSF001338 1 163 4.8E-70 T 11-11-2016 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 Gferi_RS10060 386d1aa55556402ffca4c8073d2cdc56 174 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 156 33.496 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS10060 386d1aa55556402ffca4c8073d2cdc56 174 SUPERFAMILY SSF52255 4 168 7.59E-67 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS10060 386d1aa55556402ffca4c8073d2cdc56 174 SMART SM01001 3 152 5.5E-96 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS10060 386d1aa55556402ffca4c8073d2cdc56 174 Pfam PF00731 AIR carboxylase 5 149 3.9E-66 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 ProSitePatterns PS01128 Shikimate kinase signature. 151 176 - T 11-11-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 Gene3D G3DSA:1.20.59.10 7 89 1.3E-17 T 11-11-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 SUPERFAMILY SSF52540 95 257 6.37E-25 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 Pfam PF01202 Shikimate kinase 104 260 2.8E-46 T 11-11-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 Pfam PF01817 Chorismate mutase type II 13 89 1.2E-15 T 11-11-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 Gene3D G3DSA:3.40.50.300 97 260 3.5E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 SMART SM00830 13 92 2.7E-15 T 11-11-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 PRINTS PR01100 Shikimate kinase family signature 122 135 4.7E-17 T 11-11-2016 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 PRINTS PR01100 Shikimate kinase family signature 168 177 4.7E-17 T 11-11-2016 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 PRINTS PR01100 Shikimate kinase family signature 150 158 4.7E-17 T 11-11-2016 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 PRINTS PR01100 Shikimate kinase family signature 98 113 4.7E-17 T 11-11-2016 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 PRINTS PR01100 Shikimate kinase family signature 189 206 4.7E-17 T 11-11-2016 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 TIGRFAM TIGR01805 CM_mono_grmpos: chorismate mutase 10 89 2.6E-21 T 11-11-2016 IPR011279 Chorismate mutase, Gram-positive Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 SUPERFAMILY SSF48600 7 86 1.98E-16 T 11-11-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 Gferi_RS13435 ec6a5302ae73e2e87d85c6e432dbe11d 265 Hamap MF_00109 Shikimate kinase [aroK]. 95 261 25.472 T 11-11-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 Gferi_RS01100 6b16e5264fbfea91f8614d26f251d6f3 293 Pfam PF00589 Phage integrase family 118 275 1.6E-31 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS01100 6b16e5264fbfea91f8614d26f251d6f3 293 SUPERFAMILY SSF56349 3 287 5.3E-49 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS01100 6b16e5264fbfea91f8614d26f251d6f3 293 Gene3D G3DSA:1.10.150.130 2 99 2.3E-14 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal Gferi_RS01100 6b16e5264fbfea91f8614d26f251d6f3 293 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 4 87 2.3E-10 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Gferi_RS01100 6b16e5264fbfea91f8614d26f251d6f3 293 Gene3D G3DSA:1.10.443.10 119 286 5.0E-39 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS26470 76b44479328416b623c497fa38ef1fef 290 SMART SM00909 75 164 1.7E-16 T 11-11-2016 IPR019606 GerMN domain Gferi_RS26470 76b44479328416b623c497fa38ef1fef 290 Pfam PF10646 Sporulation and spore germination 50 160 2.4E-21 T 11-11-2016 IPR019606 GerMN domain Gferi_RS26470 76b44479328416b623c497fa38ef1fef 290 Gene3D G3DSA:3.40.50.300 105 165 9.6E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Gene3D G3DSA:3.30.450.40 1644 1796 1.2E-4 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Pfam PF13191 AAA ATPase domain 284 456 9.0E-17 T 11-11-2016 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SMART SM00267 1450 1620 7.5E-52 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SUPERFAMILY SSF55073 1466 1622 5.18E-44 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Gene3D G3DSA:1.10.510.10 106 271 2.2E-23 T 11-11-2016 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Gene3D G3DSA:3.30.70.270 1463 1624 9.7E-48 T 11-11-2016 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Gene3D G3DSA:3.40.50.300 281 458 8.0E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Gene3D G3DSA:1.25.40.10 869 1118 7.1E-12 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SMART SM00028 771 804 460.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SMART SM00028 731 764 0.23 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SMART SM00028 932 965 1.6 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SMART SM00028 851 884 130.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SMART SM00028 972 1005 270.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SMART SM00028 1167 1200 0.93 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SUPERFAMILY SSF48452 799 1004 4.17E-18 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Pfam PF00069 Protein kinase domain 105 257 1.7E-13 T 11-11-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Gene3D G3DSA:1.25.40.10 676 868 8.0E-17 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 1458 1619 1.5E-51 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SUPERFAMILY SSF48452 676 844 7.59E-13 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SUPERFAMILY SSF52540 280 544 8.65E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 Pfam PF00990 Diguanylate cyclase, GGDEF domain 1461 1616 8.0E-46 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SMART SM00220 8 264 4.2E-4 T 11-11-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Gferi_RS25935 33c7264f295d310836503f74b155ee61 1797 SUPERFAMILY SSF56112 4 256 2.49E-25 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS08590 23cf1a68e9a265dce5044691c06ee6e8 427 Gene3D G3DSA:3.90.1150.10 308 421 6.1E-35 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS08590 23cf1a68e9a265dce5044691c06ee6e8 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 275 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS08590 23cf1a68e9a265dce5044691c06ee6e8 427 Gene3D G3DSA:3.40.640.10 63 307 7.5E-76 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS08590 23cf1a68e9a265dce5044691c06ee6e8 427 SUPERFAMILY SSF53383 17 421 1.81E-109 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS08590 23cf1a68e9a265dce5044691c06ee6e8 427 Pfam PF00202 Aminotransferase class-III 37 419 6.4E-104 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS25640 35571993139786855cdc25afd3a0d9a1 483 PIRSF PIRSF000538 1 480 8.0E-87 T 11-11-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 Gferi_RS25640 35571993139786855cdc25afd3a0d9a1 483 SUPERFAMILY SSF53067 2 252 7.58E-49 T 11-11-2016 Gferi_RS25640 35571993139786855cdc25afd3a0d9a1 483 Gene3D G3DSA:3.30.420.40 2 248 4.8E-47 T 11-11-2016 Gferi_RS25640 35571993139786855cdc25afd3a0d9a1 483 SUPERFAMILY SSF53067 253 475 1.55E-31 T 11-11-2016 Gferi_RS25640 35571993139786855cdc25afd3a0d9a1 483 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 2 248 4.2E-42 T 11-11-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Gferi_RS25640 35571993139786855cdc25afd3a0d9a1 483 Gene3D G3DSA:3.30.420.40 251 475 4.8E-27 T 11-11-2016 Gferi_RS25640 35571993139786855cdc25afd3a0d9a1 483 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 318 435 8.7E-17 T 11-11-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Gferi_RS03485 bae704d960760bb4eef08c3538948160 552 Pfam PF07508 Recombinase 181 300 1.9E-25 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS03485 bae704d960760bb4eef08c3538948160 552 Pfam PF13408 Recombinase zinc beta ribbon domain 314 365 2.0E-6 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS03485 bae704d960760bb4eef08c3538948160 552 SMART SM00857 6 160 1.5E-26 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03485 bae704d960760bb4eef08c3538948160 552 Pfam PF00239 Resolvase, N terminal domain 7 160 3.7E-17 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03485 bae704d960760bb4eef08c3538948160 552 Gene3D G3DSA:3.40.50.1390 6 121 1.0E-13 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03485 bae704d960760bb4eef08c3538948160 552 SUPERFAMILY SSF53041 6 160 1.44E-24 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS08115 50a7962f53521772aeb5efe23d658316 267 SUPERFAMILY SSF52540 2 236 8.26E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08115 50a7962f53521772aeb5efe23d658316 267 SMART SM00382 36 225 9.6E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08115 50a7962f53521772aeb5efe23d658316 267 Pfam PF00005 ABC transporter 27 175 6.7E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS08115 50a7962f53521772aeb5efe23d658316 267 Gene3D G3DSA:3.40.50.300 2 248 8.6E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08115 50a7962f53521772aeb5efe23d658316 267 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15645 7f6b57c3f127143e29b6996f78362c75 87 Pfam PF09827 CRISPR associated protein Cas2 1 66 3.9E-24 T 11-11-2016 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Gferi_RS15645 7f6b57c3f127143e29b6996f78362c75 87 Gene3D G3DSA:3.30.70.240 1 65 7.9E-28 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain Gferi_RS15645 7f6b57c3f127143e29b6996f78362c75 87 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 87 14.883 T 11-11-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Gferi_RS15645 7f6b57c3f127143e29b6996f78362c75 87 SUPERFAMILY SSF143430 1 83 1.31E-26 T 11-11-2016 Gferi_RS15645 7f6b57c3f127143e29b6996f78362c75 87 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 1 83 5.0E-17 T 11-11-2016 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 SMART SM00387 280 392 1.3E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 317 331 9.4E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 345 9.4E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 389 9.4E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 352 370 9.4E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 283 390 6.1E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 SMART SM00388 163 234 3.1E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 Pfam PF00072 Response regulator receiver domain 9 123 6.9E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 Pfam PF00512 His Kinase A (phospho-acceptor) domain 164 234 6.3E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 Gene3D G3DSA:3.40.50.2300 4 133 1.0E-34 T 11-11-2016 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 SMART SM00448 7 122 1.7E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 Gene3D G3DSA:3.30.565.10 222 390 1.1E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 Gene3D G3DSA:1.10.287.130 155 221 8.1E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 SUPERFAMILY SSF52172 6 143 8.54E-36 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 SUPERFAMILY SSF55874 223 390 1.83E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15040 7caffefe7b4efa01c613add675f5b944 429 SUPERFAMILY SSF47384 149 235 3.73E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS09525 cb78f18f21a998c579186b11e81a6365 306 Gene3D G3DSA:1.10.3720.10 87 298 1.8E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09525 cb78f18f21a998c579186b11e81a6365 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 1.7E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09525 cb78f18f21a998c579186b11e81a6365 306 SUPERFAMILY SSF161098 88 291 1.74E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS14990 3c0cad933d800d21c3e39faa93c325cc 449 Pfam PF02310 B12 binding domain 21 127 1.0E-16 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS14990 3c0cad933d800d21c3e39faa93c325cc 449 Pfam PF04055 Radical SAM superfamily 183 341 3.8E-13 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS14990 3c0cad933d800d21c3e39faa93c325cc 449 SUPERFAMILY SSF102114 155 388 1.19E-33 T 11-11-2016 Gferi_RS14990 3c0cad933d800d21c3e39faa93c325cc 449 SMART SM00729 177 385 3.0E-27 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS14990 3c0cad933d800d21c3e39faa93c325cc 449 Gene3D G3DSA:3.80.30.20 177 409 1.8E-36 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS14990 3c0cad933d800d21c3e39faa93c325cc 449 SUPERFAMILY SSF52242 56 119 7.06E-8 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS14990 3c0cad933d800d21c3e39faa93c325cc 449 Gene3D G3DSA:3.40.50.280 58 101 6.9E-4 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS11520 ae79beebb23fbabbf8920bf42a86d522 540 Pfam PF00488 MutS domain V 340 537 3.1E-32 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS11520 ae79beebb23fbabbf8920bf42a86d522 540 SUPERFAMILY SSF48334 49 291 2.49E-14 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS11520 ae79beebb23fbabbf8920bf42a86d522 540 Gene3D G3DSA:3.40.50.300 296 538 5.0E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11520 ae79beebb23fbabbf8920bf42a86d522 540 SMART SM00533 7 319 2.0E-4 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS11520 ae79beebb23fbabbf8920bf42a86d522 540 SUPERFAMILY SSF52540 296 474 1.31E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11520 ae79beebb23fbabbf8920bf42a86d522 540 SMART SM00534 336 539 4.1E-32 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 SUPERFAMILY SSF55785 8 100 3.49E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 Gene3D G3DSA:1.10.8.60 315 391 3.5E-22 T 11-11-2016 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 SUPERFAMILY SSF46689 397 447 2.55E-5 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 Pfam PF00158 Sigma-54 interaction domain 145 308 7.7E-67 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 SUPERFAMILY SSF52540 142 385 2.03E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 Gene3D G3DSA:3.40.50.300 138 314 1.0E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 SMART SM00091 5 71 1.2E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 SMART SM00382 161 305 5.0E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 Pfam PF02954 Bacterial regulatory protein, Fis family 427 447 1.2E-4 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 Gene3D G3DSA:1.10.10.60 399 447 6.1E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 Pfam PF00989 PAS fold 9 61 1.1E-6 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS07205 8d57581c78e71c6c67cec7bedf77e642 447 Gene3D G3DSA:3.30.450.20 9 74 3.3E-10 T 11-11-2016 Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 TIGRFAM TIGR00032 argG: argininosuccinate synthase 5 392 1.2E-155 T 11-11-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 Gene3D G3DSA:3.40.50.620 4 172 3.6E-65 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 SUPERFAMILY SSF52402 3 204 6.58E-48 T 11-11-2016 Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 117 128 - T 11-11-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 9 17 - T 11-11-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 Pfam PF00764 Arginosuccinate synthase 7 392 2.2E-163 T 11-11-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 Gene3D G3DSA:3.90.1260.10 175 399 2.4E-94 T 11-11-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 SUPERFAMILY SSF69864 172 399 1.27E-91 T 11-11-2016 Gferi_RS13010 f83f7eec544828d63023a103aec06ed7 411 Hamap MF_00005 Argininosuccinate synthase [argG]. 3 398 53.444 T 11-11-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS25465 2c34b4e7550e053475a32df18c82baa3 244 Pfam PF12730 ABC-2 family transporter protein 10 179 3.4E-19 T 11-11-2016 IPR032688 ABC-2 family transporter protein GO:0006810 Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 Gene3D G3DSA:3.30.230.10 564 760 7.3E-30 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 653 754 6.9E-10 T 11-11-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 Pfam PF13654 AAA domain 26 544 6.7E-200 T 11-11-2016 Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 681 700 1.4E-15 T 11-11-2016 Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 711 729 1.4E-15 T 11-11-2016 Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 62 81 1.4E-15 T 11-11-2016 Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 570 586 1.4E-15 T 11-11-2016 Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 651 670 1.4E-15 T 11-11-2016 Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 SUPERFAMILY SSF54211 568 762 2.16E-33 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 SUPERFAMILY SSF52540 311 540 4.81E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 SUPERFAMILY SSF52540 30 105 4.81E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 Gene3D G3DSA:3.40.50.300 120 235 1.0E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20580 f202740e6fc2c013b3e71bffa33f0bf6 820 Gene3D G3DSA:3.40.50.300 40 84 1.0E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 SUPERFAMILY SSF48557 1 437 4.24E-97 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 435 5.0E-114 T 11-11-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 Gene3D G3DSA:1.10.275.10 1 84 1.0E-27 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 Pfam PF00206 Lyase 45 287 4.2E-21 T 11-11-2016 IPR022761 Fumarate lyase, N-terminal Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 Gene3D G3DSA:1.20.200.10 85 433 5.8E-115 T 11-11-2016 Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 PRINTS PR00149 Fumarate lyase superfamily signature 263 279 5.7E-10 T 11-11-2016 IPR000362 Fumarate lyase family Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 PRINTS PR00149 Fumarate lyase superfamily signature 126 144 5.7E-10 T 11-11-2016 IPR000362 Fumarate lyase family Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 PRINTS PR00149 Fumarate lyase superfamily signature 220 247 5.7E-10 T 11-11-2016 IPR000362 Fumarate lyase family Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 SMART SM00998 352 436 3.0E-25 T 11-11-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 ProSitePatterns PS00163 Fumarate lyases signature. 263 272 - T 11-11-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 Gferi_RS00600 0a23545a8626f3ccbd1c1d50c37611bd 459 Pfam PF10397 Adenylosuccinate lyase C-terminus 353 435 5.2E-16 T 11-11-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 Gene3D G3DSA:3.10.150.10 248 365 1.0E-37 T 11-11-2016 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 SUPERFAMILY SSF55979 127 243 3.37E-26 T 11-11-2016 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 Gene3D G3DSA:3.10.150.10 1 120 3.9E-32 T 11-11-2016 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 SMART SM00480 17 361 9.1E-126 T 11-11-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 PIRSF PIRSF000804 1 366 2.2E-120 T 11-11-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 Gene3D G3DSA:3.10.150.10 121 246 5.2E-36 T 11-11-2016 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 365 8.3E-105 T 11-11-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 SUPERFAMILY SSF55979 244 365 5.24E-35 T 11-11-2016 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 244 364 3.4E-31 T 11-11-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 128 240 2.7E-29 T 11-11-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 2.0E-32 T 11-11-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS13255 9f918324e6314dff3e80a195d2034b8b 367 SUPERFAMILY SSF55979 1 116 1.19E-27 T 11-11-2016 Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 SUPERFAMILY SSF48019 251 434 2.61E-64 T 11-11-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 Gene3D G3DSA:1.10.8.60 156 238 3.4E-7 T 11-11-2016 Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 Gene3D G3DSA:1.10.3710.10 347 434 9.9E-23 T 11-11-2016 Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 SMART SM00382 50 170 2.9E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 Pfam PF12002 MgsA AAA+ ATPase C terminal 266 431 7.6E-62 T 11-11-2016 IPR021886 MgsA AAA+ ATPase C-terminal Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 SUPERFAMILY SSF52540 12 237 9.47E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 Pfam PF16193 AAA C-terminal domain 190 265 1.7E-18 T 11-11-2016 IPR032423 AAA ATPase, C-terminal domain Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 Gene3D G3DSA:1.20.272.10 249 345 3.6E-38 T 11-11-2016 Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 17 140 9.0E-16 T 11-11-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Gferi_RS26790 30c8f34f19c217029f2dcd12d117224c 435 Gene3D G3DSA:3.40.50.300 14 155 2.6E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23195 77279e1aeea7f6de07020e3afcf91ad6 251 SUPERFAMILY SSF52317 34 248 1.11E-37 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS23195 77279e1aeea7f6de07020e3afcf91ad6 251 Gene3D G3DSA:3.40.50.880 1 248 3.2E-53 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS23195 77279e1aeea7f6de07020e3afcf91ad6 251 Pfam PF07722 Peptidase C26 3 227 7.3E-60 T 11-11-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 Gferi_RS13190 170d65d80f46887a4699eb790446cc96 393 Gene3D G3DSA:3.40.50.2300 208 300 4.7E-4 T 11-11-2016 Gferi_RS13190 170d65d80f46887a4699eb790446cc96 393 SUPERFAMILY SSF53822 41 387 1.65E-82 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS13190 170d65d80f46887a4699eb790446cc96 393 Pfam PF13458 Periplasmic binding protein 42 382 4.3E-58 T 11-11-2016 IPR028081 Leucine-binding protein domain Gferi_RS13190 170d65d80f46887a4699eb790446cc96 393 Gene3D G3DSA:3.40.50.2300 304 370 1.2E-49 T 11-11-2016 Gferi_RS13190 170d65d80f46887a4699eb790446cc96 393 Gene3D G3DSA:3.40.50.2300 38 162 1.2E-49 T 11-11-2016 Gferi_RS26415 beace1d505fde203c647e5e7409648a6 216 Pfam PF13309 HTH domain 148 209 2.0E-24 T 11-11-2016 Gferi_RS26415 beace1d505fde203c647e5e7409648a6 216 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 8 115 2.0E-29 T 11-11-2016 IPR013559 YheO-like Gferi_RS26415 beace1d505fde203c647e5e7409648a6 216 Gene3D G3DSA:3.30.450.20 63 126 3.4E-4 T 11-11-2016 Gferi_RS26415 beace1d505fde203c647e5e7409648a6 216 Pfam PF08348 YheO-like PAS domain 9 120 4.2E-44 T 11-11-2016 IPR013559 YheO-like Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 11-11-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 Gene3D G3DSA:1.10.1900.20 55 117 2.6E-31 T 11-11-2016 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 Pfam PF00453 Ribosomal protein L20 3 109 1.1E-45 T 11-11-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 SUPERFAMILY SSF74731 3 116 9.03E-47 T 11-11-2016 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.157 T 11-11-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 23 72 9.0E-17 T 11-11-2016 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 6.1E-47 T 11-11-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 4.5E-39 T 11-11-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 4.5E-39 T 11-11-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS04085 19ed13cceecfee2e4de1a12b63b9f5b2 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 4.5E-39 T 11-11-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 Gene3D G3DSA:1.10.287.130 250 321 1.6E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 Gene3D G3DSA:3.30.565.10 332 477 6.3E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 SUPERFAMILY SSF47384 245 321 1.96E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 SUPERFAMILY SSF55874 316 478 1.51E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 321 3.3E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 460 2.6E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 421 2.6E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 435 2.6E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 SUPERFAMILY SSF158472 191 242 5.62E-11 T 11-11-2016 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 Pfam PF00672 HAMP domain 176 239 7.0E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 SMART SM00304 191 243 3.5E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 SMART SM00388 258 325 1.0E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 SMART SM00387 370 482 3.8E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14030 fb5a4e6038d87431c525cc3c2b1bcc87 484 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 370 476 1.8E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS10800 b0d24dda6d52fdaedc1ff1e43fe8cc11 248 Gene3D G3DSA:3.40.50.2020 71 244 1.2E-23 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS10800 b0d24dda6d52fdaedc1ff1e43fe8cc11 248 Gene3D G3DSA:2.10.290.10 23 66 1.6E-4 T 11-11-2016 IPR029037 YfgJ-like Gferi_RS10800 b0d24dda6d52fdaedc1ff1e43fe8cc11 248 Pfam PF00156 Phosphoribosyl transferase domain 175 243 2.1E-6 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS10800 b0d24dda6d52fdaedc1ff1e43fe8cc11 248 SUPERFAMILY SSF53271 70 242 6.29E-29 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 Gene3D G3DSA:3.40.50.720 3 243 2.7E-85 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.8E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.8E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.8E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.8E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 6.8E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 6.8E-41 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.6E-13 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.6E-13 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.6E-13 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 243 1.6E-68 T 11-11-2016 Gferi_RS22860 a44d30def3bc7f67ed71ab7ae5fc26e3 247 SUPERFAMILY SSF51735 4 244 2.84E-85 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS27205 e0fbf4fb84c300fa9718fb1d1661dc57 202 Pfam PF01926 50S ribosome-binding GTPase 4 157 2.1E-8 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS27205 e0fbf4fb84c300fa9718fb1d1661dc57 202 Gene3D G3DSA:3.40.50.300 3 199 3.2E-22 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27205 e0fbf4fb84c300fa9718fb1d1661dc57 202 SUPERFAMILY SSF52540 49 202 1.01E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27205 e0fbf4fb84c300fa9718fb1d1661dc57 202 SUPERFAMILY SSF52540 3 21 1.01E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 PRINTS PR00148 Enolase signature 38 52 4.4E-47 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 PRINTS PR00148 Enolase signature 108 124 4.4E-47 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 PRINTS PR00148 Enolase signature 162 175 4.4E-47 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 PRINTS PR00148 Enolase signature 366 383 4.4E-47 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 PRINTS PR00148 Enolase signature 314 325 4.4E-47 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 PRINTS PR00148 Enolase signature 337 351 4.4E-47 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 PIRSF PIRSF001400 1 428 1.4E-195 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 5 428 3.3E-216 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 426 2.9E-136 T 11-11-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 Gene3D G3DSA:3.30.390.10 4 127 1.7E-57 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 SUPERFAMILY SSF51604 139 429 3.25E-131 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 SMART SM01192 140 428 5.4E-225 T 11-11-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 Hamap MF_00318 Enolase [eno]. 3 414 46.377 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 Pfam PF03952 Enolase, N-terminal domain 5 135 6.7E-61 T 11-11-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 ProSitePatterns PS00164 Enolase signature. 337 350 - T 11-11-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 SUPERFAMILY SSF54826 4 139 1.69E-59 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 SMART SM01193 5 135 9.8E-101 T 11-11-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS24475 c9cf9b56bd765c882d55fe4c8e072997 430 Gene3D G3DSA:3.20.20.120 129 427 1.1E-136 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS07100 9c0e992daf8c13f99fdeacf57be818ad 196 SUPERFAMILY SSF46689 3 82 2.21E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07100 9c0e992daf8c13f99fdeacf57be818ad 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 4.9E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07100 9c0e992daf8c13f99fdeacf57be818ad 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 4.9E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07100 9c0e992daf8c13f99fdeacf57be818ad 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 6.6E-18 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07100 9c0e992daf8c13f99fdeacf57be818ad 196 Gene3D G3DSA:1.10.357.10 3 189 3.1E-34 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS07100 9c0e992daf8c13f99fdeacf57be818ad 196 SUPERFAMILY SSF48498 94 190 8.9E-12 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 TIGRFAM TIGR00400 mgtE: magnesium transporter 14 443 1.5E-107 T 11-11-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 SUPERFAMILY SSF158791 2 128 2.09E-26 T 11-11-2016 Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 Pfam PF01769 Divalent cation transporter 315 437 1.3E-26 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 Pfam PF00571 CBS domain 197 249 3.9E-7 T 11-11-2016 IPR000644 CBS domain Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 Pfam PF00571 CBS domain 132 188 0.0054 T 11-11-2016 IPR000644 CBS domain Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 SUPERFAMILY SSF54631 131 267 3.03E-29 T 11-11-2016 Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 SMART SM00924 28 131 8.2E-26 T 11-11-2016 IPR006668 Magnesium transporter, MgtE intracellular domain Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 SMART SM00116 202 250 1.1E-6 T 11-11-2016 IPR000644 CBS domain Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 Gene3D G3DSA:3.10.580.10 124 256 1.8E-19 T 11-11-2016 Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 Gene3D G3DSA:1.10.357.20 274 443 9.6E-52 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 SUPERFAMILY SSF161093 275 443 3.01E-50 T 11-11-2016 Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 Pfam PF03448 MgtE intracellular N domain 28 129 1.3E-18 T 11-11-2016 IPR006668 Magnesium transporter, MgtE intracellular domain Gferi_RS14355 5e36874ba301008664488271ca6acf41 447 Gene3D G3DSA:1.25.60.10 3 123 5.2E-23 T 11-11-2016 Gferi_RS23835 3d1ae971060b3f4bc3984e064482e3b1 99 SUPERFAMILY SSF46785 4 93 1.98E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23835 3d1ae971060b3f4bc3984e064482e3b1 99 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 2.6E-10 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23835 3d1ae971060b3f4bc3984e064482e3b1 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 2.2E-11 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23835 3d1ae971060b3f4bc3984e064482e3b1 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 2.2E-11 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23835 3d1ae971060b3f4bc3984e064482e3b1 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 2.2E-11 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23835 3d1ae971060b3f4bc3984e064482e3b1 99 Gene3D G3DSA:1.10.10.10 12 95 2.3E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23835 3d1ae971060b3f4bc3984e064482e3b1 99 SMART SM00418 16 93 5.5E-16 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 226 375 8.5E-29 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 SUPERFAMILY SSF116878 385 460 2.48E-48 T 11-11-2016 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 SUPERFAMILY SSF116878 127 226 2.48E-48 T 11-11-2016 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Pfam PF12631 MnmE helical domain 129 457 8.1E-60 T 11-11-2016 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 460 2.9E-132 T 11-11-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Gene3D G3DSA:1.20.120.430 390 460 1.3E-53 T 11-11-2016 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Gene3D G3DSA:1.20.120.430 254 277 1.3E-53 T 11-11-2016 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Gene3D G3DSA:1.20.120.430 128 188 1.3E-53 T 11-11-2016 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Pfam PF01926 50S ribosome-binding GTPase 226 337 1.2E-25 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Gene3D G3DSA:3.30.1360.120 3 127 6.8E-42 T 11-11-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Gene3D G3DSA:3.40.50.300 293 389 8.0E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Gene3D G3DSA:3.40.50.300 224 253 5.5E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 460 34.729 T 11-11-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 SUPERFAMILY SSF103025 4 126 3.77E-38 T 11-11-2016 Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 SUPERFAMILY SSF52540 210 377 1.5E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 SUPERFAMILY SSF52540 88 176 1.5E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13290 0de00f3c3429e9b68bcc2eab8ac7e41a 460 Pfam PF10396 GTP-binding protein TrmE N-terminus 5 126 3.5E-38 T 11-11-2016 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 Gferi_RS01465 a577d5b151d39e7ab853faefc9b90b5c 361 SUPERFAMILY SSF52540 192 354 1.01E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01465 a577d5b151d39e7ab853faefc9b90b5c 361 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 8 354 2.7E-139 T 11-11-2016 IPR004482 Mg chelatase-related protein Gferi_RS01465 a577d5b151d39e7ab853faefc9b90b5c 361 Pfam PF01078 Magnesium chelatase, subunit ChlI 193 355 8.9E-76 T 11-11-2016 IPR000523 Magnesium chelatase ChlI domain Gferi_RS01465 a577d5b151d39e7ab853faefc9b90b5c 361 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 142 1.7E-46 T 11-11-2016 Gferi_RS01465 a577d5b151d39e7ab853faefc9b90b5c 361 Gene3D G3DSA:3.40.50.300 192 354 4.4E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01465 a577d5b151d39e7ab853faefc9b90b5c 361 Gene3D G3DSA:3.30.230.10 5 168 3.5E-39 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS01465 a577d5b151d39e7ab853faefc9b90b5c 361 SUPERFAMILY SSF54211 8 169 4.93E-38 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS11245 eb24f760ce0624c6bf272cac92d057d1 348 Pfam PF01992 ATP synthase (C/AC39) subunit 10 343 6.3E-65 T 11-11-2016 IPR002843 ATPase, V0 complex, c/d subunit Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11245 eb24f760ce0624c6bf272cac92d057d1 348 SUPERFAMILY SSF103486 7 345 1.83E-36 T 11-11-2016 IPR002843 ATPase, V0 complex, c/d subunit Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS18390 ef6acf0f9c5ee98a2890d273559bdbac 262 SUPERFAMILY SSF52151 7 210 3.92E-57 T 11-11-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 Gferi_RS18390 ef6acf0f9c5ee98a2890d273559bdbac 262 Pfam PF01734 Patatin-like phospholipase 13 170 6.1E-27 T 11-11-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 Gferi_RS18390 ef6acf0f9c5ee98a2890d273559bdbac 262 Gene3D G3DSA:3.40.1090.10 3 170 2.4E-21 T 11-11-2016 Gferi_RS21530 d75e340165cbaa42ca76ebb9be9491da 1693 Pfam PF04205 FMN-binding domain 49 120 5.3E-14 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS21530 d75e340165cbaa42ca76ebb9be9491da 1693 Pfam PF07833 Copper amine oxidase N-terminal domain 1607 1689 4.7E-20 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS21530 d75e340165cbaa42ca76ebb9be9491da 1693 Pfam PF07833 Copper amine oxidase N-terminal domain 1577 1636 3.4E-16 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS21530 d75e340165cbaa42ca76ebb9be9491da 1693 SUPERFAMILY SSF55383 1578 1631 1.96E-13 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS21530 d75e340165cbaa42ca76ebb9be9491da 1693 SUPERFAMILY SSF55383 1615 1684 5.36E-12 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS21530 d75e340165cbaa42ca76ebb9be9491da 1693 SMART SM00900 49 122 4.3E-15 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS21530 d75e340165cbaa42ca76ebb9be9491da 1693 Gene3D G3DSA:3.30.457.10 1621 1680 3.3E-13 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS21530 d75e340165cbaa42ca76ebb9be9491da 1693 Gene3D G3DSA:3.30.457.10 1579 1620 2.1E-14 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS25170 3964c8f121e2ca5af3dc95fda6170fe5 465 SUPERFAMILY SSF51569 1 278 5.13E-90 T 11-11-2016 Gferi_RS25170 3964c8f121e2ca5af3dc95fda6170fe5 465 Gene3D G3DSA:1.10.10.60 410 445 9.0E-5 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25170 3964c8f121e2ca5af3dc95fda6170fe5 465 Gene3D G3DSA:3.20.20.70 1 278 9.7E-116 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS25170 3964c8f121e2ca5af3dc95fda6170fe5 465 Pfam PF00682 HMGL-like 3 268 3.9E-48 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 Gferi_RS25170 3964c8f121e2ca5af3dc95fda6170fe5 465 SUPERFAMILY SSF89000 299 447 1.96E-51 T 11-11-2016 Gferi_RS25170 3964c8f121e2ca5af3dc95fda6170fe5 465 Pfam PF02436 Conserved carboxylase domain 296 448 4.4E-53 T 11-11-2016 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Gferi_RS13545 e463040e6643a0dbc00256eb41de1368 314 Pfam PF00491 Arginase family 27 294 1.5E-72 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS13545 e463040e6643a0dbc00256eb41de1368 314 PIRSF PIRSF036979 5 302 3.7E-74 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS13545 e463040e6643a0dbc00256eb41de1368 314 Gene3D G3DSA:3.40.800.10 17 300 6.6E-77 T 11-11-2016 IPR023696 Ureohydrolase domain Gferi_RS13545 e463040e6643a0dbc00256eb41de1368 314 TIGRFAM TIGR01230 agmatinase: agmatinase 23 294 8.8E-65 T 11-11-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 Gferi_RS13545 e463040e6643a0dbc00256eb41de1368 314 SUPERFAMILY SSF52768 16 299 9.36E-74 T 11-11-2016 Gferi_RS13545 e463040e6643a0dbc00256eb41de1368 314 PRINTS PR00116 Arginase signature 110 125 5.4E-13 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS13545 e463040e6643a0dbc00256eb41de1368 314 PRINTS PR00116 Arginase signature 224 253 5.4E-13 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS13545 e463040e6643a0dbc00256eb41de1368 314 ProSitePatterns PS01053 Arginase family signature. 227 248 - T 11-11-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 313 319 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 686 40.894 T 11-11-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 Gene3D G3DSA:3.40.50.1000 448 569 7.9E-38 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 SUPERFAMILY SSF81665 208 305 8.5E-12 T 11-11-2016 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 SUPERFAMILY SSF81665 21 103 8.5E-12 T 11-11-2016 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 Gene3D G3DSA:2.70.150.10 66 208 6.1E-28 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 Gene3D G3DSA:3.40.1110.10 322 447 1.6E-54 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 Pfam PF00122 E1-E2 ATPase 71 302 2.8E-45 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 3 683 0.0 T 11-11-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 342 1.2E-32 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 378 603 7.2E-48 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 522 541 4.3E-24 T 11-11-2016 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 545 557 4.3E-24 T 11-11-2016 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 4.3E-24 T 11-11-2016 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 4.3E-24 T 11-11-2016 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 479 4.3E-24 T 11-11-2016 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 SUPERFAMILY SSF56784 383 565 2.0E-38 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 SUPERFAMILY SSF56784 299 323 2.0E-38 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 536 5.9E-33 T 11-11-2016 Gferi_RS07655 caa9aac9fde05d1bc7a053365052aac4 688 SUPERFAMILY SSF81653 114 207 2.09E-24 T 11-11-2016 Gferi_RS26410 d95442004c9fc70e77661fb63bf8ae88 116 Pfam PF02410 Ribosomal silencing factor during starvation 11 106 1.2E-28 T 11-11-2016 Gferi_RS26410 d95442004c9fc70e77661fb63bf8ae88 116 SUPERFAMILY SSF81301 5 114 1.39E-39 T 11-11-2016 Gferi_RS26410 d95442004c9fc70e77661fb63bf8ae88 116 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 11 106 1.0E-36 T 11-11-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Gferi_RS26410 d95442004c9fc70e77661fb63bf8ae88 116 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 5 107 24.393 T 11-11-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Gferi_RS26410 d95442004c9fc70e77661fb63bf8ae88 116 Gene3D G3DSA:3.30.460.10 5 109 3.7E-38 T 11-11-2016 Gferi_RS10935 e6bf8fd8846c0c67b32825a134fec64b 144 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 141 33.904 T 11-11-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 Gferi_RS10935 e6bf8fd8846c0c67b32825a134fec64b 144 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 6 138 1.1E-57 T 11-11-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 Gferi_RS10935 e6bf8fd8846c0c67b32825a134fec64b 144 SUPERFAMILY SSF54637 1 138 6.13E-50 T 11-11-2016 IPR029069 HotDog domain Gferi_RS10935 e6bf8fd8846c0c67b32825a134fec64b 144 Gene3D G3DSA:3.10.129.10 2 140 2.6E-58 T 11-11-2016 IPR029069 HotDog domain Gferi_RS10935 e6bf8fd8846c0c67b32825a134fec64b 144 Pfam PF07977 FabA-like domain 11 132 8.5E-37 T 11-11-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 Gferi_RS19050 1f9e4dd0d8a4b1a7d996b683912244de 430 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 1 427 4.0E-112 T 11-11-2016 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 Gferi_RS04910 4b41cdb2c476e7620a9de8a0a47a4057 76 TIGRFAM TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain 3 64 2.7E-18 T 11-11-2016 IPR022516 Nif11-like leader peptide Gferi_RS04910 4b41cdb2c476e7620a9de8a0a47a4057 76 Pfam PF07862 Nitrogen fixation protein of unknown function 2 47 1.6E-14 T 11-11-2016 IPR012903 Uncharacterised protein family, nitrogen fixation Gferi_RS24040 ae27417273e1720efc3c37e1d9bbb24e 240 Gene3D G3DSA:3.10.290.10 4 68 2.0E-18 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS24040 ae27417273e1720efc3c37e1d9bbb24e 240 Pfam PF00849 RNA pseudouridylate synthase 66 198 2.1E-18 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS24040 ae27417273e1720efc3c37e1d9bbb24e 240 Pfam PF01479 S4 domain 6 48 1.7E-10 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS24040 ae27417273e1720efc3c37e1d9bbb24e 240 SUPERFAMILY SSF55120 51 238 4.5E-42 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS24040 ae27417273e1720efc3c37e1d9bbb24e 240 SMART SM00363 5 65 2.3E-8 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS24040 ae27417273e1720efc3c37e1d9bbb24e 240 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 70 230 6.8E-45 T 11-11-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Gferi_RS24040 ae27417273e1720efc3c37e1d9bbb24e 240 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 11-11-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Gferi_RS24040 ae27417273e1720efc3c37e1d9bbb24e 240 SUPERFAMILY SSF55174 5 63 1.3E-13 T 11-11-2016 Gferi_RS09800 4864a592236a781dc1d088545d6bf454 135 Gene3D G3DSA:1.10.60.10 76 121 2.4E-17 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS09800 4864a592236a781dc1d088545d6bf454 135 SUPERFAMILY SSF47979 64 122 1.22E-15 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS09800 4864a592236a781dc1d088545d6bf454 135 Gene3D G3DSA:1.10.10.10 3 74 3.1E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09800 4864a592236a781dc1d088545d6bf454 135 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 64 121 1.7E-16 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS09800 4864a592236a781dc1d088545d6bf454 135 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 5 56 3.1E-9 T 11-11-2016 IPR022687 DTXR-type HTH domain GO:0003677 Gferi_RS09800 4864a592236a781dc1d088545d6bf454 135 SMART SM00529 25 123 2.8E-24 T 11-11-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 Gferi_RS09800 4864a592236a781dc1d088545d6bf454 135 SUPERFAMILY SSF46785 4 63 8.49E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17965 c788daf55279e64fc54bfe8efbf6eb04 307 Pfam PF00994 Probable molybdopterin binding domain 130 267 9.4E-16 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS17965 c788daf55279e64fc54bfe8efbf6eb04 307 Gene3D G3DSA:3.40.980.10 126 272 5.7E-21 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS17965 c788daf55279e64fc54bfe8efbf6eb04 307 SUPERFAMILY SSF53218 127 276 6.67E-21 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS17965 c788daf55279e64fc54bfe8efbf6eb04 307 SMART SM00852 129 269 2.8E-12 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 SUPERFAMILY SSF46548 133 249 6.28E-14 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 Gene3D G3DSA:1.25.10.10 296 370 2.5E-11 T 11-11-2016 IPR011989 Armadillo-like helical Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 Pfam PF13646 HEAT repeats 297 367 1.5E-9 T 11-11-2016 Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 186 197 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 Gene3D G3DSA:3.30.70.20 183 256 1.1E-6 T 11-11-2016 Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 Pfam PF13484 4Fe-4S double cluster binding domain 185 248 4.8E-12 T 11-11-2016 Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 SUPERFAMILY SSF48371 297 366 1.4E-10 T 11-11-2016 IPR016024 Armadillo-type fold GO:0005488 Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 9 339 5.3E-110 T 11-11-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 Gferi_RS24115 312d06c041cf95807c7151e950fa033d 374 Pfam PF08331 Domain of unknown function (DUF1730) 56 133 1.4E-19 T 11-11-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 Gferi_RS21425 447f2308acc3b6a965e15a15916718e5 71 Gene3D G3DSA:3.10.450.50 14 68 8.7E-11 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS21425 447f2308acc3b6a965e15a15916718e5 71 Pfam PF12893 Putative lumazine-binding 11 68 3.5E-9 T 11-11-2016 Gferi_RS21425 447f2308acc3b6a965e15a15916718e5 71 SUPERFAMILY SSF54427 18 69 7.45E-9 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS12650 ea7b984b373fcbd3aeaff1fb4badb89d 384 PIRSF PIRSF005572 1 383 5.5E-48 T 11-11-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 Gferi_RS12650 ea7b984b373fcbd3aeaff1fb4badb89d 384 SUPERFAMILY SSF53383 4 380 3.77E-92 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS12650 ea7b984b373fcbd3aeaff1fb4badb89d 384 Gene3D G3DSA:3.90.1150.10 258 379 5.3E-16 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS12650 ea7b984b373fcbd3aeaff1fb4badb89d 384 TIGRFAM TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein 4 380 1.0E-133 T 11-11-2016 IPR010969 Cysteine desulfurase-related, unknown function Gferi_RS12650 ea7b984b373fcbd3aeaff1fb4badb89d 384 Pfam PF00266 Aminotransferase class-V 4 371 2.2E-83 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS12650 ea7b984b373fcbd3aeaff1fb4badb89d 384 Gene3D G3DSA:3.40.640.10 20 257 1.5E-67 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS19955 155ac773b244022993ea35386624e5e5 498 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 9 487 1.0E-190 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS19955 155ac773b244022993ea35386624e5e5 498 ProSitePatterns PS01303 BCCT family of transporters signature. 310 319 - T 11-11-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 Gferi_RS19955 155ac773b244022993ea35386624e5e5 498 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 47 488 2.6E-159 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS11810 4e62bdaaa3642b647221880a9e3da479 609 Pfam PF00395 S-layer homology domain 183 227 1.1E-12 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11810 4e62bdaaa3642b647221880a9e3da479 609 Pfam PF00395 S-layer homology domain 50 89 1.4E-10 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS09975 42edd977e2c6329d6dc1b9f3dd9abed2 528 SUPERFAMILY SSF51182 10 102 1.5E-16 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS09975 42edd977e2c6329d6dc1b9f3dd9abed2 528 Pfam PF06580 Histidine kinase 323 399 3.3E-23 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS09975 42edd977e2c6329d6dc1b9f3dd9abed2 528 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 419 520 1.2E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09975 42edd977e2c6329d6dc1b9f3dd9abed2 528 Gene3D G3DSA:2.60.120.10 3 101 1.5E-18 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS09975 42edd977e2c6329d6dc1b9f3dd9abed2 528 SUPERFAMILY SSF55874 376 519 2.62E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09975 42edd977e2c6329d6dc1b9f3dd9abed2 528 Pfam PF10114 Sensory domain found in PocR 139 285 1.1E-13 T 11-11-2016 IPR018771 PocR domain Gferi_RS09975 42edd977e2c6329d6dc1b9f3dd9abed2 528 Pfam PF07883 Cupin domain 33 100 5.2E-9 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS09975 42edd977e2c6329d6dc1b9f3dd9abed2 528 Gene3D G3DSA:3.30.565.10 373 519 2.3E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16400 6e501f7fcb17305f7bd39df4fa5a6269 231 SUPERFAMILY SSF47644 6 76 1.05E-11 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16400 6e501f7fcb17305f7bd39df4fa5a6269 231 SUPERFAMILY SSF52242 84 219 2.75E-38 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16400 6e501f7fcb17305f7bd39df4fa5a6269 231 Pfam PF02607 B12 binding domain 9 75 1.0E-8 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16400 6e501f7fcb17305f7bd39df4fa5a6269 231 SMART SM01018 5 87 3.0E-13 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16400 6e501f7fcb17305f7bd39df4fa5a6269 231 Gene3D G3DSA:1.10.1240.10 6 69 1.7E-8 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16400 6e501f7fcb17305f7bd39df4fa5a6269 231 Gene3D G3DSA:3.40.50.280 80 220 7.6E-44 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16400 6e501f7fcb17305f7bd39df4fa5a6269 231 Pfam PF02310 B12 binding domain 95 195 2.5E-20 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS23115 905920085fa180a5c387cc3161c57671 560 Gene3D G3DSA:3.30.565.10 414 558 9.6E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS23115 905920085fa180a5c387cc3161c57671 560 SUPERFAMILY SSF55874 417 557 9.04E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS23115 905920085fa180a5c387cc3161c57671 560 SMART SM00387 455 560 1.8E-6 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS23115 905920085fa180a5c387cc3161c57671 560 Pfam PF06580 Histidine kinase 363 440 4.2E-24 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS23115 905920085fa180a5c387cc3161c57671 560 Gene3D G3DSA:3.30.450.40 297 351 7.5E-5 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS23115 905920085fa180a5c387cc3161c57671 560 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 459 559 4.1E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS23115 905920085fa180a5c387cc3161c57671 560 Pfam PF07694 5TMR of 5TMR-LYT 26 191 4.6E-42 T 11-11-2016 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 Gferi_RS23115 905920085fa180a5c387cc3161c57671 560 SUPERFAMILY SSF55781 264 350 4.17E-6 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS14900 adb11de0cf3b244c823afee4dab85d1e 336 Gene3D G3DSA:3.40.50.2300 43 164 6.8E-31 T 11-11-2016 Gferi_RS14900 adb11de0cf3b244c823afee4dab85d1e 336 Gene3D G3DSA:3.40.50.2300 165 318 1.1E-32 T 11-11-2016 Gferi_RS14900 adb11de0cf3b244c823afee4dab85d1e 336 Pfam PF13407 Periplasmic binding protein domain 51 304 5.0E-43 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS14900 adb11de0cf3b244c823afee4dab85d1e 336 SUPERFAMILY SSF53822 54 328 7.97E-56 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 377 3.4E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 305 319 3.4E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 333 3.4E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 358 3.4E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 SMART SM00388 158 225 1.1E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 Pfam PF00512 His Kinase A (phospho-acceptor) domain 159 222 8.0E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 SUPERFAMILY SSF158472 107 155 1.03E-6 T 11-11-2016 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 Pfam PF00672 HAMP domain 86 153 9.5E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 SMART SM00387 268 378 1.2E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 SMART SM00304 104 157 2.0E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 Gene3D G3DSA:3.30.565.10 211 377 6.0E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 271 377 6.8E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 SUPERFAMILY SSF47384 141 222 5.1E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 Gene3D G3DSA:1.10.287.130 149 210 2.5E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24565 05fd0fe2641e98e2cf2e4ade3f7c3612 378 SUPERFAMILY SSF55874 231 377 1.17E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS23090 ed85ec20d2fbd9d0ecf293bea4f5f555 80 Gene3D G3DSA:1.20.5.810 10 37 4.1E-8 T 11-11-2016 Gferi_RS23090 ed85ec20d2fbd9d0ecf293bea4f5f555 80 Gene3D G3DSA:1.20.1290.10 38 80 2.3E-11 T 11-11-2016 IPR029032 AhpD-like Reactome: R-HSA-5628897 Gferi_RS23090 ed85ec20d2fbd9d0ecf293bea4f5f555 80 SUPERFAMILY SSF69118 1 80 1.83E-21 T 11-11-2016 IPR029032 AhpD-like Reactome: R-HSA-5628897 Gferi_RS20830 2bc6b38fc3cc2cc6a1660485201e14de 162 SUPERFAMILY SSF55040 9 153 2.09E-61 T 11-11-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 Gferi_RS20830 2bc6b38fc3cc2cc6a1660485201e14de 162 Pfam PF01967 MoaC family 13 148 3.4E-55 T 11-11-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 Gferi_RS20830 2bc6b38fc3cc2cc6a1660485201e14de 162 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 2 150 9.0E-63 T 11-11-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 Gferi_RS20830 2bc6b38fc3cc2cc6a1660485201e14de 162 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 1 156 35.373 T 11-11-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type Reactome: R-HSA-947581 Gferi_RS20830 2bc6b38fc3cc2cc6a1660485201e14de 162 Gene3D G3DSA:3.30.70.640 2 156 1.5E-68 T 11-11-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 Gferi_RS17110 28c089b3391c478d1000e672c437084b 170 Pfam PF02151 UvrB/uvrC motif 130 165 6.7E-8 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS17110 28c089b3391c478d1000e672c437084b 170 Gene3D G3DSA:4.10.860.10 129 165 5.0E-8 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS17110 28c089b3391c478d1000e672c437084b 170 PIRSF PIRSF015034 1 169 1.5E-63 T 11-11-2016 IPR025542 YacH protein Gferi_RS17110 28c089b3391c478d1000e672c437084b 170 SUPERFAMILY SSF46600 129 165 5.75E-7 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 Pfam PF07687 Peptidase dimerisation domain 207 309 2.3E-13 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 406 7.8E-183 T 11-11-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 139 178 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 SUPERFAMILY SSF53187 2 211 2.37E-80 T 11-11-2016 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 SUPERFAMILY SSF53187 323 404 2.37E-80 T 11-11-2016 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 Pfam PF01546 Peptidase family M20/M25/M40 140 402 2.1E-12 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 Gene3D G3DSA:3.40.630.10 323 406 1.8E-120 T 11-11-2016 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 Gene3D G3DSA:3.40.630.10 2 210 1.8E-120 T 11-11-2016 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 Gene3D G3DSA:3.30.70.360 211 320 1.0E-47 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 Hamap MF_00550 Peptidase T [pepT]. 1 405 59.094 T 11-11-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 PIRSF PIRSF037215 1 408 9.0E-192 T 11-11-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 Gferi_RS04445 61ac2baba03f334b5df92a4bf31b2f3d 409 SUPERFAMILY SSF55031 210 321 9.42E-42 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS21260 46e8375d0fd2a0f036ad37a75e04940f 140 Pfam PF01609 Transposase DDE domain 4 66 3.2E-10 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21260 46e8375d0fd2a0f036ad37a75e04940f 140 Gene3D G3DSA:3.90.350.10 4 48 4.0E-4 T 11-11-2016 IPR014736 Transposase, Tn5-like, core Gferi_RS21260 46e8375d0fd2a0f036ad37a75e04940f 140 SUPERFAMILY SSF53098 3 68 7.28E-11 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS15790 24ed21f6a99673bcbfda7d17b698f2c6 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 265 6.9E-12 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS15790 24ed21f6a99673bcbfda7d17b698f2c6 277 Gene3D G3DSA:1.10.3720.10 3 272 1.6E-49 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS15790 24ed21f6a99673bcbfda7d17b698f2c6 277 SUPERFAMILY SSF161098 2 270 3.83E-54 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS15685 342ac9413c7ec2a5fe48f129dfa90e11 415 Pfam PF13530 Sterol carrier protein domain 181 411 2.8E-37 T 11-11-2016 IPR025559 Enhanced intracellular survival protein domain Gferi_RS15685 342ac9413c7ec2a5fe48f129dfa90e11 415 Pfam PF13527 Acetyltransferase (GNAT) domain 4 135 2.9E-24 T 11-11-2016 Gferi_RS15685 342ac9413c7ec2a5fe48f129dfa90e11 415 SUPERFAMILY SSF55718 318 415 1.11E-16 T 11-11-2016 IPR003033 SCP2 sterol-binding domain Gferi_RS15685 342ac9413c7ec2a5fe48f129dfa90e11 415 SUPERFAMILY SSF55729 4 275 1.88E-44 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS15685 342ac9413c7ec2a5fe48f129dfa90e11 415 Gene3D G3DSA:3.40.630.30 134 278 2.1E-28 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS15685 342ac9413c7ec2a5fe48f129dfa90e11 415 Gene3D G3DSA:3.40.630.30 3 133 2.2E-25 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS15685 342ac9413c7ec2a5fe48f129dfa90e11 415 Gene3D G3DSA:3.30.1050.10 312 403 7.3E-17 T 11-11-2016 IPR003033 SCP2 sterol-binding domain Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 Gene3D G3DSA:3.40.47.10 148 190 6.3E-62 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 Gene3D G3DSA:3.40.47.10 274 389 6.3E-62 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 Gene3D G3DSA:3.40.47.10 191 272 4.6E-70 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 Gene3D G3DSA:3.40.47.10 4 122 4.6E-70 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 Pfam PF02803 Thiolase, C-terminal domain 268 389 3.1E-46 T 11-11-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 PIRSF PIRSF000429 1 390 6.9E-131 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 SUPERFAMILY SSF53901 269 389 2.47E-42 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 388 1.6E-138 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 SUPERFAMILY SSF53901 4 267 1.5E-73 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 Pfam PF00108 Thiolase, N-terminal domain 5 260 9.5E-75 T 11-11-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Gferi_RS10190 c94a208a7ff960d5c157cf0373fa09b2 390 ProSitePatterns PS00737 Thiolases signature 2. 336 352 - T 11-11-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Gferi_RS25440 0b0ac199f6338a1c349743d7b14d081a 316 Pfam PF00395 S-layer homology domain 263 305 1.7E-5 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS25440 0b0ac199f6338a1c349743d7b14d081a 316 Pfam PF00395 S-layer homology domain 140 181 3.2E-10 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS25440 0b0ac199f6338a1c349743d7b14d081a 316 Pfam PF00395 S-layer homology domain 198 241 2.9E-15 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS02590 e703493a71a658561999bee905236369 984 Gene3D G3DSA:3.20.20.450 734 982 2.4E-93 T 11-11-2016 IPR001633 EAL domain Gferi_RS02590 e703493a71a658561999bee905236369 984 Pfam PF08447 PAS fold 453 541 5.5E-17 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 Gferi_RS02590 e703493a71a658561999bee905236369 984 SMART SM00091 430 499 2.7E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS02590 e703493a71a658561999bee905236369 984 Pfam PF00990 Diguanylate cyclase, GGDEF domain 559 716 1.7E-46 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS02590 e703493a71a658561999bee905236369 984 Pfam PF04392 ABC transporter substrate binding protein 126 336 8.2E-11 T 11-11-2016 IPR007487 ABC transporter, substrate-binding protein Gferi_RS02590 e703493a71a658561999bee905236369 984 Gene3D G3DSA:3.30.70.270 560 727 3.4E-53 T 11-11-2016 Gferi_RS02590 e703493a71a658561999bee905236369 984 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 427 554 1.4E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS02590 e703493a71a658561999bee905236369 984 Pfam PF00563 EAL domain 736 970 4.6E-71 T 11-11-2016 IPR001633 EAL domain Gferi_RS02590 e703493a71a658561999bee905236369 984 SUPERFAMILY SSF55785 435 549 6.28E-17 T 11-11-2016 IPR000014 PAS domain Gferi_RS02590 e703493a71a658561999bee905236369 984 SUPERFAMILY SSF141868 736 981 7.85E-86 T 11-11-2016 IPR001633 EAL domain Gferi_RS02590 e703493a71a658561999bee905236369 984 SUPERFAMILY SSF55073 564 722 3.14E-46 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS02590 e703493a71a658561999bee905236369 984 SMART SM00267 548 720 6.6E-60 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS02590 e703493a71a658561999bee905236369 984 Gene3D G3DSA:3.30.450.20 418 557 5.0E-28 T 11-11-2016 Gferi_RS02590 e703493a71a658561999bee905236369 984 SMART SM00052 730 975 9.5E-102 T 11-11-2016 IPR001633 EAL domain Gferi_RS02590 e703493a71a658561999bee905236369 984 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 556 719 2.4E-43 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS02590 e703493a71a658561999bee905236369 984 SMART SM00086 506 548 3.0E-4 T 11-11-2016 IPR001610 PAC motif Gferi_RS23350 0ee84799a9e1d3f423364816efa5ee88 126 Pfam PF04266 ASCH domain 5 64 3.5E-8 T 11-11-2016 IPR007374 ASCH domain Gferi_RS23350 0ee84799a9e1d3f423364816efa5ee88 126 SUPERFAMILY SSF88697 1 122 1.18E-27 T 11-11-2016 IPR015947 PUA-like domain Gferi_RS23350 0ee84799a9e1d3f423364816efa5ee88 126 Gene3D G3DSA:2.30.130.30 3 117 3.9E-17 T 11-11-2016 Gferi_RS23350 0ee84799a9e1d3f423364816efa5ee88 126 SMART SM01022 5 98 4.6E-5 T 11-11-2016 IPR007374 ASCH domain Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 SUPERFAMILY SSF82693 221 322 1.62E-12 T 11-11-2016 Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 Pfam PF00873 AcrB/AcrD/AcrF family 1 512 7.0E-108 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 Gene3D G3DSA:1.20.1640.10 1 155 4.1E-42 T 11-11-2016 Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 Gene3D G3DSA:3.30.2090.10 376 462 2.3E-13 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 SUPERFAMILY SSF82866 2 145 7.06E-34 T 11-11-2016 Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 SUPERFAMILY SSF82714 376 459 7.85E-14 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 Gene3D G3DSA:3.30.70.1430 223 321 3.3E-11 T 11-11-2016 Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 PRINTS PR00702 Acriflavin resistance protein family signature 39 63 2.5E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 PRINTS PR00702 Acriflavin resistance protein family signature 281 295 2.5E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 PRINTS PR00702 Acriflavin resistance protein family signature 118 141 2.5E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21980 f48e14da91db2c54cdc909ecea7983d1 512 PRINTS PR00702 Acriflavin resistance protein family signature 11 32 2.5E-22 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS13170 555da2c61e6bdf8e591a4881576453df 236 PIRSF PIRSF039137 1 235 2.2E-112 T 11-11-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Gferi_RS13170 555da2c61e6bdf8e591a4881576453df 236 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS13170 555da2c61e6bdf8e591a4881576453df 236 SMART SM00382 26 219 0.0026 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13170 555da2c61e6bdf8e591a4881576453df 236 SUPERFAMILY SSF52540 2 233 9.21E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13170 555da2c61e6bdf8e591a4881576453df 236 Pfam PF00005 ABC transporter 17 162 8.6E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS13170 555da2c61e6bdf8e591a4881576453df 236 Gene3D G3DSA:3.40.50.300 1 230 3.3E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14295 389cfbb6365d2e1b72d975fada777b66 351 Pfam PF01699 Sodium/calcium exchanger protein 17 163 3.3E-25 T 11-11-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Gferi_RS14295 389cfbb6365d2e1b72d975fada777b66 351 Pfam PF01699 Sodium/calcium exchanger protein 208 348 8.7E-27 T 11-11-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Gferi_RS14295 389cfbb6365d2e1b72d975fada777b66 351 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 17 343 4.8E-54 T 11-11-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 8.2E-33 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-11-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.0E-32 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 SUPERFAMILY SSF55594 4 82 5.76E-30 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.4E-21 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.4E-21 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.4E-21 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS20935 c526ad7dac9eee5089b8d77ff3870263 88 Gene3D G3DSA:3.30.1340.10 1 82 1.4E-34 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS17245 c6c98add3e6986ae6fd50a0757aca34c 165 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 37.164 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Gferi_RS17245 c6c98add3e6986ae6fd50a0757aca34c 165 SUPERFAMILY SSF69765 1 156 4.32E-66 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Gferi_RS17245 c6c98add3e6986ae6fd50a0757aca34c 165 Gene3D G3DSA:3.30.1330.50 1 155 3.7E-71 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Gferi_RS17245 c6c98add3e6986ae6fd50a0757aca34c 165 Pfam PF02542 YgbB family 1 154 2.6E-66 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Gferi_RS17245 c6c98add3e6986ae6fd50a0757aca34c 165 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 155 6.9E-70 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Gferi_RS17245 c6c98add3e6986ae6fd50a0757aca34c 165 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 11-11-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Gferi_RS23435 37b1bf5f5a932c22b0bf3e5c5faf6859 178 SUPERFAMILY SSF55729 30 161 4.63E-17 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS23435 37b1bf5f5a932c22b0bf3e5c5faf6859 178 Pfam PF13302 Acetyltransferase (GNAT) domain 38 152 1.0E-9 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS23435 37b1bf5f5a932c22b0bf3e5c5faf6859 178 Gene3D G3DSA:3.40.630.30 36 160 5.1E-15 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 SUPERFAMILY SSF54373 220 234 6.41E-12 T 11-11-2016 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 SUPERFAMILY SSF54373 269 329 6.41E-12 T 11-11-2016 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 Pfam PF01266 FAD dependent oxidoreductase 6 369 4.0E-68 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 Gene3D G3DSA:3.50.50.60 1 82 6.9E-62 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 Gene3D G3DSA:3.50.50.60 330 389 6.9E-62 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 Gene3D G3DSA:3.50.50.60 140 218 6.9E-62 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 SUPERFAMILY SSF51905 5 219 4.01E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 SUPERFAMILY SSF51905 330 389 4.01E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 Gene3D G3DSA:3.30.9.10 219 329 5.2E-14 T 11-11-2016 Gferi_RS25685 2bfa4c69bb3858b60f15eaa4d9078379 398 Gene3D G3DSA:3.30.9.10 88 139 5.2E-14 T 11-11-2016 Gferi_RS19065 d00010a9fe118946e19313be986548d4 323 Pfam PF13280 WYL domain 141 317 2.4E-28 T 11-11-2016 IPR026881 WYL domain Gferi_RS19065 d00010a9fe118946e19313be986548d4 323 SUPERFAMILY SSF46785 4 59 3.81E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19065 d00010a9fe118946e19313be986548d4 323 Pfam PF08279 HTH domain 9 59 5.5E-13 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS19065 d00010a9fe118946e19313be986548d4 323 Gene3D G3DSA:1.10.10.10 3 61 2.9E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 Gene3D G3DSA:1.10.8.60 328 380 4.7E-17 T 11-11-2016 Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 SUPERFAMILY SSF52540 153 397 1.09E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 SMART SM00091 11 78 0.0011 T 11-11-2016 IPR000014 PAS domain Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 SUPERFAMILY SSF46689 419 467 7.53E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 Pfam PF02954 Bacterial regulatory protein, Fis family 426 464 3.2E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 Pfam PF08448 PAS fold 22 111 1.5E-7 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 SUPERFAMILY SSF55785 22 107 2.62E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 SMART SM00382 174 322 1.6E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 Gene3D G3DSA:3.40.50.300 151 327 2.1E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 370 379 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 Pfam PF00158 Sigma-54 interaction domain 154 321 1.2E-66 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 Gene3D G3DSA:3.30.450.20 22 110 6.5E-9 T 11-11-2016 Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 178 191 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 241 256 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS10195 23a4edfd2b9a7d4645792f53afc1001a 468 Gene3D G3DSA:1.10.10.60 381 466 9.3E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS23940 7087575ffe25772c368cafe4efca32ea 261 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 171 5.0E-21 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS23940 7087575ffe25772c368cafe4efca32ea 261 SUPERFAMILY SSF88659 111 173 1.53E-11 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS23940 7087575ffe25772c368cafe4efca32ea 261 Pfam PF04542 Sigma-70 region 2 6 72 2.8E-10 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS23940 7087575ffe25772c368cafe4efca32ea 261 Gene3D G3DSA:1.10.10.10 116 175 5.8E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23940 7087575ffe25772c368cafe4efca32ea 261 SUPERFAMILY SSF88946 4 86 3.3E-18 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS23940 7087575ffe25772c368cafe4efca32ea 261 Pfam PF08281 Sigma-70, region 4 118 169 1.4E-11 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS23940 7087575ffe25772c368cafe4efca32ea 261 Gene3D G3DSA:1.10.1740.10 3 73 3.4E-21 T 11-11-2016 Gferi_RS10605 87110e23797cbee298a28cd468b69246 416 Gene3D G3DSA:2.40.50.100 69 98 3.1E-17 T 11-11-2016 Gferi_RS10605 87110e23797cbee298a28cd468b69246 416 Gene3D G3DSA:2.40.50.100 218 250 3.1E-17 T 11-11-2016 Gferi_RS10605 87110e23797cbee298a28cd468b69246 416 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 190 412 2.8E-36 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 Gferi_RS10605 87110e23797cbee298a28cd468b69246 416 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 330 6.0E-21 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS10605 87110e23797cbee298a28cd468b69246 416 SUPERFAMILY SSF111369 215 334 3.4E-15 T 11-11-2016 Gferi_RS10605 87110e23797cbee298a28cd468b69246 416 SUPERFAMILY SSF111369 131 174 3.4E-15 T 11-11-2016 Gferi_RS10605 87110e23797cbee298a28cd468b69246 416 SUPERFAMILY SSF111369 57 101 3.4E-15 T 11-11-2016 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 SUPERFAMILY SSF52540 348 395 2.48E-90 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 SUPERFAMILY SSF52540 2 226 2.48E-90 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Pfam PF07517 SecA DEAD-like domain 4 382 1.8E-135 T 11-11-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 PRINTS PR00906 SecA protein signature 61 85 5.6E-69 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 PRINTS PR00906 SecA protein signature 168 188 5.6E-69 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 PRINTS PR00906 SecA protein signature 115 125 5.6E-69 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 PRINTS PR00906 SecA protein signature 393 406 5.6E-69 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 PRINTS PR00906 SecA protein signature 99 113 5.6E-69 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 PRINTS PR00906 SecA protein signature 319 341 5.6E-69 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 PRINTS PR00906 SecA protein signature 356 373 5.6E-69 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 SMART SM00957 4 382 6.8E-295 T 11-11-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Pfam PF01043 SecA preprotein cross-linking domain 230 338 1.4E-42 T 11-11-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 SUPERFAMILY SSF52540 398 626 6.32E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Hamap MF_01382 Protein translocase subunit SecA [secA]. 3 838 20.414 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Gene3D G3DSA:3.40.50.300 349 396 3.7E-130 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Gene3D G3DSA:3.40.50.300 2 226 3.7E-130 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 ProSitePatterns PS01312 SecA family signature. 480 495 - T 11-11-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 26 824 0.0 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Pfam PF07516 SecA Wing and Scaffold domain 625 835 2.1E-69 T 11-11-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Gene3D G3DSA:1.10.3060.10 656 836 1.2E-60 T 11-11-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 SMART SM00958 226 338 1.2E-70 T 11-11-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 SUPERFAMILY SSF81767 225 348 2.09E-46 T 11-11-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 SUPERFAMILY SSF81886 630 880 6.67E-82 T 11-11-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Gene3D G3DSA:3.40.50.300 398 627 1.9E-94 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Pfam PF02810 SEC-C motif 872 889 6.5E-10 T 11-11-2016 IPR004027 SEC-C motif Gferi_RS10670 abcca940dedabb817aaaf75d11180a1f 891 Gene3D G3DSA:3.90.1440.10 228 348 1.6E-48 T 11-11-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 Gferi_RS23755 134350a6dfe643997ca7d98be62c0eda 319 SUPERFAMILY SSF53474 34 294 1.1E-26 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS23755 134350a6dfe643997ca7d98be62c0eda 319 Gene3D G3DSA:3.40.50.1820 23 313 6.9E-27 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS23755 134350a6dfe643997ca7d98be62c0eda 319 Pfam PF00561 alpha/beta hydrolase fold 53 156 1.7E-12 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 PIRSF PIRSF000726 1 435 9.7E-75 T 11-11-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 SUPERFAMILY SSF55021 360 434 5.44E-22 T 11-11-2016 Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 Pfam PF00696 Amino acid kinase family 2 264 1.2E-33 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 SUPERFAMILY SSF55021 284 377 1.83E-11 T 11-11-2016 Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 SUPERFAMILY SSF53633 2 278 1.44E-60 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 Gene3D G3DSA:3.40.1160.10 2 51 2.4E-44 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 Gene3D G3DSA:3.40.1160.10 101 280 2.4E-44 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 Pfam PF13840 ACT domain 368 430 5.0E-9 T 11-11-2016 IPR027795 GATS-like ACT domain Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 11-11-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS14795 7f5c2b29d395320baaa9c3271033bb2b 435 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 5 434 1.5E-75 T 11-11-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS19620 9a78e5545befd0b4ad57598beca2d163 303 Gene3D G3DSA:3.30.70.270 93 241 1.3E-37 T 11-11-2016 Gferi_RS19620 9a78e5545befd0b4ad57598beca2d163 303 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 87 241 5.0E-41 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS19620 9a78e5545befd0b4ad57598beca2d163 303 SUPERFAMILY SSF55073 95 241 2.2E-35 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS19620 9a78e5545befd0b4ad57598beca2d163 303 SMART SM00267 79 243 3.3E-38 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS19620 9a78e5545befd0b4ad57598beca2d163 303 Pfam PF00990 Diguanylate cyclase, GGDEF domain 90 238 1.5E-36 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS09315 32f9755f3452fa78e5c9a293df03b879 228 SUPERFAMILY SSF46785 158 221 1.45E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09315 32f9755f3452fa78e5c9a293df03b879 228 Gene3D G3DSA:2.60.120.10 22 139 5.2E-30 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS09315 32f9755f3452fa78e5c9a293df03b879 228 Pfam PF00027 Cyclic nucleotide-binding domain 31 118 1.7E-20 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS09315 32f9755f3452fa78e5c9a293df03b879 228 SUPERFAMILY SSF51206 23 139 9.56E-30 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS09315 32f9755f3452fa78e5c9a293df03b879 228 Gene3D G3DSA:1.10.10.10 153 223 1.8E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09315 32f9755f3452fa78e5c9a293df03b879 228 Pfam PF13545 Crp-like helix-turn-helix domain 166 220 5.9E-10 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS09315 32f9755f3452fa78e5c9a293df03b879 228 SMART SM00100 12 130 3.2E-15 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Gene3D G3DSA:1.10.1780.10 3 146 1.2E-47 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Gene3D G3DSA:3.40.50.300 494 732 7.7E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 18 70 2.5E-18 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 2.7E-18 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Gene3D G3DSA:1.10.8.60 349 426 4.4E-38 T 11-11-2016 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Pfam PF07724 AAA domain (Cdc48 subfamily) 540 715 4.4E-58 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Gene3D G3DSA:4.10.860.10 427 459 2.4E-4 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 326 1.7E-14 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Pfam PF02151 UvrB/uvrC motif 422 456 2.7E-9 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Gene3D G3DSA:1.10.8.60 733 814 1.9E-30 T 11-11-2016 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 300 312 - T 11-11-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 721 801 4.1E-25 T 11-11-2016 IPR019489 Clp ATPase, C-terminal Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 652 666 3.4E-43 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 545 563 3.4E-43 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 590 608 3.4E-43 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 619 637 3.4E-43 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 SUPERFAMILY SSF52540 490 811 2.06E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 Gene3D G3DSA:3.40.50.300 167 348 1.8E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 SUPERFAMILY SSF81923 6 148 1.37E-32 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 575 593 - T 11-11-2016 IPR028299 ClpA/B, conserved site 2 Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 SMART SM00382 205 349 5.6E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 SMART SM00382 541 687 6.7E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 SUPERFAMILY SSF52540 165 477 5.74E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17120 30028229e9a06c7ee641eba62b640871 820 SMART SM01086 721 810 1.4E-34 T 11-11-2016 IPR019489 Clp ATPase, C-terminal Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 Gene3D G3DSA:3.65.10.10 229 422 2.1E-57 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 PIRSF PIRSF000505 1 424 1.4E-121 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 ProSitePatterns PS00885 EPSP synthase signature 2. 337 355 - T 11-11-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 420 5.0E-127 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 12 423 2.0E-134 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 ProSitePatterns PS00104 EPSP synthase signature 1. 86 100 - T 11-11-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 Gene3D G3DSA:3.65.10.10 20 228 2.3E-58 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 8 424 33.578 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 Gferi_RS13415 6d417afea2d6b94545d8d37897256fc4 425 SUPERFAMILY SSF55205 2 423 5.4E-131 T 11-11-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Gferi_RS19840 4daf42780275442720946990fc0b2a8d 500 ProSitePatterns PS01163 Galactose-1-phosphate uridyl transferase family 2 signature. 260 277 - T 11-11-2016 IPR023425 Galactose-1-phosphate uridyl transferase, class II, conserved site GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19840 4daf42780275442720946990fc0b2a8d 500 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 20 232 6.4E-36 T 11-11-2016 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 Gferi_RS19840 4daf42780275442720946990fc0b2a8d 500 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 248 419 1.2E-28 T 11-11-2016 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 Gferi_RS19840 4daf42780275442720946990fc0b2a8d 500 TIGRFAM TIGR01239 galT_2: galactose-1-phosphate uridylyltransferase 7 498 8.6E-209 T 11-11-2016 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19840 4daf42780275442720946990fc0b2a8d 500 PIRSF PIRSF006005 1 500 6.2E-220 T 11-11-2016 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS19840 4daf42780275442720946990fc0b2a8d 500 Hamap MF_00571 Galactose-1-phosphate uridylyltransferase [galT]. 1 500 249.763 T 11-11-2016 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 Gferi_RS00820 0c539379ce22090f5346897118f42a62 445 Gene3D G3DSA:2.160.20.70 189 234 3.9E-4 T 11-11-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 Gferi_RS00820 0c539379ce22090f5346897118f42a62 445 Pfam PF03961 Protein of unknown function (DUF342) 1 438 5.1E-124 T 11-11-2016 IPR005646 Protein of unknown function DUF342 Gferi_RS10760 967b27450c95718a25f79267413d57b7 74 Hamap MF_00167 Carbon storage regulator [csrA]. 1 70 18.639 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Gferi_RS10760 967b27450c95718a25f79267413d57b7 74 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-11 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Gferi_RS10760 967b27450c95718a25f79267413d57b7 74 Pfam PF02599 Global regulator protein family 1 52 6.2E-23 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Gferi_RS10760 967b27450c95718a25f79267413d57b7 74 SUPERFAMILY SSF117130 1 55 1.7E-18 T 11-11-2016 Gferi_RS10760 967b27450c95718a25f79267413d57b7 74 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 66 2.3E-25 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Gferi_RS18915 25f529d9b803fd93cafc93a4b5be39a9 939 Gene3D G3DSA:3.40.50.300 225 343 8.7E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18915 25f529d9b803fd93cafc93a4b5be39a9 939 Gene3D G3DSA:3.40.50.300 1 170 1.3E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18915 25f529d9b803fd93cafc93a4b5be39a9 939 Pfam PF00271 Helicase conserved C-terminal domain 230 321 1.9E-10 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS18915 25f529d9b803fd93cafc93a4b5be39a9 939 Pfam PF04851 Type III restriction enzyme, res subunit 1 165 3.0E-19 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Gferi_RS18915 25f529d9b803fd93cafc93a4b5be39a9 939 SMART SM00487 1 197 5.5E-11 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS18915 25f529d9b803fd93cafc93a4b5be39a9 939 SUPERFAMILY SSF52540 194 335 1.42E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18915 25f529d9b803fd93cafc93a4b5be39a9 939 SUPERFAMILY SSF52540 18 167 1.42E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18915 25f529d9b803fd93cafc93a4b5be39a9 939 SMART SM00490 240 322 1.2E-7 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS23190 27dbd2827cbe43e3a95a0817633d50db 321 SUPERFAMILY SSF102114 8 299 5.1E-47 T 11-11-2016 Gferi_RS23190 27dbd2827cbe43e3a95a0817633d50db 321 Gene3D G3DSA:3.80.30.20 22 254 7.6E-26 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS23190 27dbd2827cbe43e3a95a0817633d50db 321 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 306 5.7E-100 T 11-11-2016 IPR005911 Protein YhcC-like GO:0051536 Gferi_RS23190 27dbd2827cbe43e3a95a0817633d50db 321 SMART SM00729 23 251 1.0E-34 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS23190 27dbd2827cbe43e3a95a0817633d50db 321 Pfam PF16199 Radical_SAM C-terminal domain 213 295 5.7E-23 T 11-11-2016 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 Gferi_RS23190 27dbd2827cbe43e3a95a0817633d50db 321 Pfam PF04055 Radical SAM superfamily 43 200 6.3E-11 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS14365 5d22ca30b3a01837eb6f741e3e103f47 469 SUPERFAMILY SSF58104 91 338 4.32E-56 T 11-11-2016 Gferi_RS14365 5d22ca30b3a01837eb6f741e3e103f47 469 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 183 210 8.4E-16 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS14365 5d22ca30b3a01837eb6f741e3e103f47 469 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 212 241 8.4E-16 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS14365 5d22ca30b3a01837eb6f741e3e103f47 469 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 106 135 8.4E-16 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS14365 5d22ca30b3a01837eb6f741e3e103f47 469 Gene3D G3DSA:1.10.287.950 100 316 9.7E-47 T 11-11-2016 Gferi_RS14365 5d22ca30b3a01837eb6f741e3e103f47 469 SMART SM00283 85 344 7.9E-40 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS14365 5d22ca30b3a01837eb6f741e3e103f47 469 Pfam PF13682 Chemoreceptor zinc-binding domain 362 426 8.7E-13 T 11-11-2016 IPR025991 Chemoreceptor zinc-binding domain Gferi_RS14365 5d22ca30b3a01837eb6f741e3e103f47 469 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 154 339 1.7E-35 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS24230 fd996a40a3d836fe4a5d1dff561c6518 294 Gene3D G3DSA:3.30.230.10 48 123 6.0E-10 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS24230 fd996a40a3d836fe4a5d1dff561c6518 294 SUPERFAMILY SSF54211 1 157 4.1E-20 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS24230 fd996a40a3d836fe4a5d1dff561c6518 294 Pfam PF08544 GHMP kinases C terminal 199 256 2.2E-5 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS24230 fd996a40a3d836fe4a5d1dff561c6518 294 PIRSF PIRSF033887 1 278 1.1E-76 T 11-11-2016 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00040+2.7.1.17|KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443 Gferi_RS24230 fd996a40a3d836fe4a5d1dff561c6518 294 Pfam PF00288 GHMP kinases N terminal domain 76 123 8.7E-7 T 11-11-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 Gferi_RS25495 316e597553b832e05f0116e3745e008d 103 SUPERFAMILY SSF46785 15 82 1.79E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25495 316e597553b832e05f0116e3745e008d 103 Pfam PF13730 Helix-turn-helix domain 18 70 7.8E-16 T 11-11-2016 Gferi_RS25495 316e597553b832e05f0116e3745e008d 103 Gene3D G3DSA:1.10.10.10 12 92 3.6E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04075 4687aa2aeadebc314284a3530515a711 216 Pfam PF02254 TrkA-N domain 4 119 2.3E-30 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Gferi_RS04075 4687aa2aeadebc314284a3530515a711 216 SUPERFAMILY SSF51735 2 133 1.13E-36 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04075 4687aa2aeadebc314284a3530515a711 216 SUPERFAMILY SSF116726 130 214 4.32E-19 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS04075 4687aa2aeadebc314284a3530515a711 216 Pfam PF02080 TrkA-C domain 149 214 9.4E-15 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS04075 4687aa2aeadebc314284a3530515a711 216 Gene3D G3DSA:3.40.50.720 2 138 7.4E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04075 4687aa2aeadebc314284a3530515a711 216 Gene3D G3DSA:3.30.70.1450 149 215 8.4E-19 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS00785 88fef0a9f5e9dd9d6fe513276305af34 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 28.2 T 11-11-2016 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Gferi_RS00785 88fef0a9f5e9dd9d6fe513276305af34 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 1.8E-70 T 11-11-2016 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Gferi_RS00785 88fef0a9f5e9dd9d6fe513276305af34 185 Pfam PF01765 Ribosome recycling factor 20 183 1.4E-65 T 11-11-2016 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Gferi_RS00785 88fef0a9f5e9dd9d6fe513276305af34 185 Gene3D G3DSA:1.10.132.20 66 185 2.9E-42 T 11-11-2016 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Gferi_RS00785 88fef0a9f5e9dd9d6fe513276305af34 185 SUPERFAMILY SSF55194 6 184 1.83E-71 T 11-11-2016 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Gferi_RS12440 49fdeb7e566deba8ebae3e06f920e4f4 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 8.8E-18 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS12440 49fdeb7e566deba8ebae3e06f920e4f4 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.1E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS12440 49fdeb7e566deba8ebae3e06f920e4f4 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.1E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS12440 49fdeb7e566deba8ebae3e06f920e4f4 208 SUPERFAMILY SSF46689 2 68 5.49E-20 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS12440 49fdeb7e566deba8ebae3e06f920e4f4 208 Gene3D G3DSA:1.10.357.10 3 126 2.3E-27 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS26205 9d596b1ce96d499c15b83a6f408f5735 113 Gene3D G3DSA:3.40.1390.20 2 107 3.0E-10 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS26205 9d596b1ce96d499c15b83a6f408f5735 113 SUPERFAMILY SSF75138 2 109 3.14E-17 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS09710 f40f10d29d8edaf35e2b6e45f59a0051 321 SUPERFAMILY SSF52283 26 132 1.12E-26 T 11-11-2016 Gferi_RS09710 f40f10d29d8edaf35e2b6e45f59a0051 321 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 222 238 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS09710 f40f10d29d8edaf35e2b6e45f59a0051 321 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 193 215 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS09710 f40f10d29d8edaf35e2b6e45f59a0051 321 SUPERFAMILY SSF51735 99 284 6.11E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09710 f40f10d29d8edaf35e2b6e45f59a0051 321 Gene3D G3DSA:3.40.50.720 105 284 5.5E-67 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09710 f40f10d29d8edaf35e2b6e45f59a0051 321 Gene3D G3DSA:3.40.50.720 15 104 1.1E-26 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09710 f40f10d29d8edaf35e2b6e45f59a0051 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 315 2.2E-22 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Gferi_RS09710 f40f10d29d8edaf35e2b6e45f59a0051 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 105 283 4.8E-63 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Gferi_RS25995 464e8a7e07be2e29256fdefb1480576e 389 Pfam PF04326 Putative DNA-binding domain 14 131 6.2E-23 T 11-11-2016 IPR007421 Schlafen, AAA domain GO:0005524 Gferi_RS25995 464e8a7e07be2e29256fdefb1480576e 389 Pfam PF13749 Putative ATP-dependent DNA helicase recG C-terminal 291 337 3.0E-6 T 11-11-2016 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain Gferi_RS06965 91564bb93f32686247ad67223490f9d6 315 Gene3D G3DSA:3.90.25.10 173 313 1.7E-28 T 11-11-2016 Gferi_RS06965 91564bb93f32686247ad67223490f9d6 315 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 304 4.7E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06965 91564bb93f32686247ad67223490f9d6 315 SUPERFAMILY SSF51735 1 313 1.61E-86 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06965 91564bb93f32686247ad67223490f9d6 315 Gene3D G3DSA:3.40.50.720 1 172 6.6E-56 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS12045 25338b0633282a4ed2100085235b84bd 157 Pfam PF13686 DsrE/DsrF/DrsH-like family 3 156 6.5E-67 T 11-11-2016 IPR032836 DsrE/DsrF/DrsH-like family Gferi_RS12045 25338b0633282a4ed2100085235b84bd 157 Gene3D G3DSA:3.40.1260.10 1 157 1.4E-60 T 11-11-2016 IPR027396 DsrEFH-like Gferi_RS12045 25338b0633282a4ed2100085235b84bd 157 SUPERFAMILY SSF75169 99 152 7.36E-24 T 11-11-2016 IPR027396 DsrEFH-like Gferi_RS12045 25338b0633282a4ed2100085235b84bd 157 SUPERFAMILY SSF75169 3 49 7.36E-24 T 11-11-2016 IPR027396 DsrEFH-like Gferi_RS12355 a0d569d9e371c0922aca0eb3ca79a761 208 SUPERFAMILY SSF88946 35 115 5.49E-20 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS12355 a0d569d9e371c0922aca0eb3ca79a761 208 Gene3D G3DSA:1.10.10.10 133 197 2.8E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12355 a0d569d9e371c0922aca0eb3ca79a761 208 Pfam PF04542 Sigma-70 region 2 37 104 2.2E-15 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS12355 a0d569d9e371c0922aca0eb3ca79a761 208 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 195 1.8E-25 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS12355 a0d569d9e371c0922aca0eb3ca79a761 208 Pfam PF08281 Sigma-70, region 4 142 189 2.3E-13 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS12355 a0d569d9e371c0922aca0eb3ca79a761 208 SUPERFAMILY SSF88659 129 196 1.5E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS12355 a0d569d9e371c0922aca0eb3ca79a761 208 Gene3D G3DSA:1.10.1740.10 36 119 3.6E-22 T 11-11-2016 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 TIGRFAM TIGR00433 bioB: biotin synthase 32 323 8.4E-123 T 11-11-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 235 324 2.2E-13 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 Gene3D G3DSA:3.20.20.70 17 324 8.0E-86 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 PIRSF PIRSF001619 1 325 5.1E-118 T 11-11-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 Pfam PF04055 Radical SAM superfamily 68 223 2.1E-15 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 Hamap MF_01694 Biotin synthase [bioB]. 16 325 42.98 T 11-11-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 SMART SM00876 235 325 4.8E-28 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 SMART SM00729 59 265 1.4E-33 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS16115 22f87d58c95149da4cc3bdf89603e010 325 SUPERFAMILY SSF102114 17 310 7.26E-71 T 11-11-2016 Gferi_RS19940 c1c7ec8cc0d4450627689e441ddc2685 502 ProSitePatterns PS01303 BCCT family of transporters signature. 309 318 - T 11-11-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 Gferi_RS19940 c1c7ec8cc0d4450627689e441ddc2685 502 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 50 494 1.7E-143 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS19940 c1c7ec8cc0d4450627689e441ddc2685 502 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 12 494 3.1E-178 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS26230 dd5ab99fa8f215623deb4f91d3765ab6 187 PIRSF PIRSF006091 1 187 5.2E-46 T 11-11-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Gferi_RS26230 dd5ab99fa8f215623deb4f91d3765ab6 187 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 1 184 23.966 T 11-11-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Gferi_RS26230 dd5ab99fa8f215623deb4f91d3765ab6 187 Pfam PF04205 FMN-binding domain 92 179 8.5E-18 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS26230 dd5ab99fa8f215623deb4f91d3765ab6 187 SMART SM00900 92 182 3.2E-23 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS26230 dd5ab99fa8f215623deb4f91d3765ab6 187 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 8 184 1.2E-36 T 11-11-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 PIRSF PIRSF000676 2 297 1.2E-84 T 11-11-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 Hamap MF_00384 Homoserine kinase [thrB]. 6 296 29.946 T 11-11-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 Gene3D G3DSA:3.30.70.890 158 277 2.6E-38 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 Pfam PF00288 GHMP kinases N terminal domain 84 139 2.2E-9 T 11-11-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 PRINTS PR00958 Homoserine kinase signature 165 182 7.1E-36 T 11-11-2016 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 PRINTS PR00958 Homoserine kinase signature 244 259 7.1E-36 T 11-11-2016 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 PRINTS PR00958 Homoserine kinase signature 92 107 7.1E-36 T 11-11-2016 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 PRINTS PR00958 Homoserine kinase signature 13 28 7.1E-36 T 11-11-2016 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 PRINTS PR00958 Homoserine kinase signature 126 139 7.1E-36 T 11-11-2016 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 85 96 - T 11-11-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 Gene3D G3DSA:3.30.230.10 5 152 6.3E-45 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 SUPERFAMILY SSF55060 161 266 5.4E-25 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 TIGRFAM TIGR00191 thrB: homoserine kinase 6 296 5.7E-73 T 11-11-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Gferi_RS17135 5b2e3857c03ca46bf1468df91b9fd31b 297 SUPERFAMILY SSF54211 5 152 9.87E-25 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.8E-5 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.8E-5 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 Pfam PF00117 Glutamine amidotransferase class-I 3 185 2.4E-53 T 11-11-2016 IPR017926 Glutamine amidotransferase Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 4.5E-13 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 4.5E-13 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 4.5E-13 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 2 186 9.6E-68 T 11-11-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 Gene3D G3DSA:3.40.50.880 2 186 5.2E-65 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 SUPERFAMILY SSF52317 2 186 1.47E-54 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00097 Anthranilate synthase component II signature 99 107 7.5E-34 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00097 Anthranilate synthase component II signature 47 56 7.5E-34 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00097 Anthranilate synthase component II signature 2 16 7.5E-34 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00097 Anthranilate synthase component II signature 119 131 7.5E-34 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00097 Anthranilate synthase component II signature 74 85 7.5E-34 T 11-11-2016 Gferi_RS06580 e0f518b208d604a36bed081453452d3b 187 PRINTS PR00097 Anthranilate synthase component II signature 164 177 7.5E-34 T 11-11-2016 Gferi_RS03525 d81eef28ab31af90bfc3801ad00877f0 460 Pfam PF04055 Radical SAM superfamily 113 240 1.4E-15 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS03525 d81eef28ab31af90bfc3801ad00877f0 460 SUPERFAMILY SSF102114 106 391 2.94E-49 T 11-11-2016 Gferi_RS03525 d81eef28ab31af90bfc3801ad00877f0 460 Gene3D G3DSA:3.20.20.70 106 390 8.0E-46 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS03525 d81eef28ab31af90bfc3801ad00877f0 460 Pfam PF13394 4Fe-4S single cluster domain 114 175 3.1E-5 T 11-11-2016 Gferi_RS08710 f92ca9a375aaf8729e8819926a64bb54 403 Pfam PF00563 EAL domain 13 243 3.1E-51 T 11-11-2016 IPR001633 EAL domain Gferi_RS08710 f92ca9a375aaf8729e8819926a64bb54 403 SUPERFAMILY SSF141868 12 247 6.28E-66 T 11-11-2016 IPR001633 EAL domain Gferi_RS08710 f92ca9a375aaf8729e8819926a64bb54 403 SMART SM00052 6 248 1.9E-44 T 11-11-2016 IPR001633 EAL domain Gferi_RS08710 f92ca9a375aaf8729e8819926a64bb54 403 Gene3D G3DSA:3.20.20.450 12 246 3.7E-58 T 11-11-2016 IPR001633 EAL domain Gferi_RS08710 f92ca9a375aaf8729e8819926a64bb54 403 Gene3D G3DSA:3.10.580.10 290 401 7.7E-6 T 11-11-2016 Gferi_RS08710 f92ca9a375aaf8729e8819926a64bb54 403 Pfam PF00571 CBS domain 346 401 0.0034 T 11-11-2016 IPR000644 CBS domain Gferi_RS08710 f92ca9a375aaf8729e8819926a64bb54 403 SUPERFAMILY SSF54631 272 403 4.55E-6 T 11-11-2016 Gferi_RS08040 54d5aaa05320c06856e69687f5c1eb0f 176 Gene3D G3DSA:1.10.1660.10 1 102 8.4E-26 T 11-11-2016 Gferi_RS08040 54d5aaa05320c06856e69687f5c1eb0f 176 SMART SM00422 2 71 6.6E-17 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS08040 54d5aaa05320c06856e69687f5c1eb0f 176 Pfam PF13411 MerR HTH family regulatory protein 2 70 7.6E-14 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS08040 54d5aaa05320c06856e69687f5c1eb0f 176 SUPERFAMILY SSF46955 1 100 9.16E-24 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 SMART SM00962 101 296 1.7E-117 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 SMART SM00963 2 87 5.8E-36 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 SUPERFAMILY SSF52540 43 353 6.73E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 SUPERFAMILY SSF47446 327 428 1.29E-37 T 11-11-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 Gene3D G3DSA:3.40.50.300 96 297 1.7E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 427 4.9E-189 T 11-11-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 1.8E-76 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 Pfam PF02881 SRP54-type protein, helical bundle domain 6 83 5.0E-24 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 Pfam PF02978 Signal peptide binding domain 328 425 7.9E-36 T 11-11-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 SMART SM00382 100 301 9.8E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 Gene3D G3DSA:1.10.260.30 328 429 6.4E-41 T 11-11-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 6 447 34.917 T 11-11-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 Gferi_RS01525 c27754e5b3f30ca58a03199f3867d88d 448 Gene3D G3DSA:1.20.120.140 3 89 1.8E-35 T 11-11-2016 Gferi_RS04610 cc7a08070e052a8bdfe27f548d4db7c9 477 SUPERFAMILY SSF53067 4 216 5.98E-41 T 11-11-2016 Gferi_RS04610 cc7a08070e052a8bdfe27f548d4db7c9 477 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 225 420 5.8E-23 T 11-11-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 Gferi_RS04610 cc7a08070e052a8bdfe27f548d4db7c9 477 SUPERFAMILY SSF53067 220 456 1.3E-41 T 11-11-2016 Gferi_RS04610 cc7a08070e052a8bdfe27f548d4db7c9 477 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 109 1.3E-10 T 11-11-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Gferi_RS04610 cc7a08070e052a8bdfe27f548d4db7c9 477 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 117 216 8.5E-11 T 11-11-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 Gferi_RS04610 cc7a08070e052a8bdfe27f548d4db7c9 477 Gene3D G3DSA:3.30.420.40 1 113 6.1E-23 T 11-11-2016 Gferi_RS04610 cc7a08070e052a8bdfe27f548d4db7c9 477 Gene3D G3DSA:3.30.420.40 121 217 1.2E-13 T 11-11-2016 Gferi_RS04610 cc7a08070e052a8bdfe27f548d4db7c9 477 Gene3D G3DSA:3.30.420.40 220 467 1.4E-40 T 11-11-2016 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 SUPERFAMILY SSF53738 31 238 5.89E-50 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 11-11-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 506 562 8.4E-9 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 Gene3D G3DSA:3.40.120.10 232 310 1.2E-22 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 SUPERFAMILY SSF53738 306 456 2.98E-32 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 SUPERFAMILY SSF55957 470 569 3.79E-15 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 42 182 3.5E-45 T 11-11-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 Gene3D G3DSA:3.40.120.10 27 217 3.9E-64 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 327 453 4.7E-24 T 11-11-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 Gene3D G3DSA:3.30.310.50 482 573 9.7E-26 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 SUPERFAMILY SSF53738 210 314 1.18E-14 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 Gene3D G3DSA:3.40.120.10 311 456 3.7E-37 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS10925 1b21f5fabb44146824b7b5adcf2aa941 578 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 316 2.1E-23 T 11-11-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 Gene3D G3DSA:1.10.10.10 5 72 1.4E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 SMART SM00345 16 75 6.3E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 SUPERFAMILY SSF46785 6 79 9.35E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 Gene3D G3DSA:3.40.1410.10 73 242 1.3E-59 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.7E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.7E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 SMART SM00866 96 236 2.0E-39 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 SUPERFAMILY SSF64288 63 243 5.5E-53 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 2.3E-18 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS15520 a6f85507141b528b8d94b3d9b24d55ab 243 Pfam PF07702 UTRA domain 97 236 2.3E-40 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 Gene3D G3DSA:3.30.450.20 16 140 6.1E-31 T 11-11-2016 Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 Pfam PF08447 PAS fold 57 136 7.3E-14 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 169 335 2.2E-51 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 SMART SM00267 161 336 1.7E-58 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 SUPERFAMILY SSF55785 17 145 8.72E-28 T 11-11-2016 IPR000014 PAS domain Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 SMART SM00086 105 147 1.2E-4 T 11-11-2016 IPR001610 PAC motif Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 28 154 3.7E-27 T 11-11-2016 IPR000014 PAS domain Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 Gene3D G3DSA:3.30.70.270 174 337 8.6E-53 T 11-11-2016 Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 Pfam PF00990 Diguanylate cyclase, GGDEF domain 172 332 1.5E-48 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 SMART SM00091 32 98 5.2E-9 T 11-11-2016 IPR000014 PAS domain Gferi_RS21965 64cd4bebc5143826a838f3883017a11c 343 SUPERFAMILY SSF55073 177 337 2.43E-49 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS04065 f4ba901007b8295b163f8208c3126775 339 Pfam PF01409 tRNA synthetases class II core domain (F) 93 339 4.5E-107 T 11-11-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 Gferi_RS04065 f4ba901007b8295b163f8208c3126775 339 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 339 1.6E-107 T 11-11-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Gferi_RS04065 f4ba901007b8295b163f8208c3126775 339 SUPERFAMILY SSF46589 15 99 6.8E-22 T 11-11-2016 IPR010978 tRNA-binding arm GO:0000166 Gferi_RS04065 f4ba901007b8295b163f8208c3126775 339 Gene3D G3DSA:3.30.930.10 9 339 2.1E-132 T 11-11-2016 Gferi_RS04065 f4ba901007b8295b163f8208c3126775 339 SUPERFAMILY SSF55681 93 339 5.76E-82 T 11-11-2016 Gferi_RS04065 f4ba901007b8295b163f8208c3126775 339 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 88 1.6E-23 T 11-11-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Gferi_RS04065 f4ba901007b8295b163f8208c3126775 339 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 9 339 48.011 T 11-11-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 Pfam PF00809 Pterin binding enzyme 333 556 3.3E-33 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 Gene3D G3DSA:3.20.20.20 336 588 2.1E-83 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 Gene3D G3DSA:3.40.50.280 676 807 5.0E-47 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 Pfam PF02607 B12 binding domain 605 676 9.7E-14 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 PIRSF PIRSF037472 11 808 0.0 T 11-11-2016 IPR017215 5-methyltetrahydrofolate-homocysteine S-methyltransferase, bacterial Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 SMART SM01018 601 684 7.1E-13 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 SUPERFAMILY SSF47644 605 683 3.14E-15 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 SUPERFAMILY SSF82282 13 371 1.83E-111 T 11-11-2016 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 Pfam PF02310 B12 binding domain 692 797 3.8E-26 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 SUPERFAMILY SSF51717 330 586 1.03E-72 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 SUPERFAMILY SSF52242 671 807 1.57E-40 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 Gene3D G3DSA:1.10.1240.10 604 675 8.3E-17 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 Pfam PF02574 Homocysteine S-methyltransferase 24 296 2.5E-70 T 11-11-2016 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Gferi_RS08920 f519fb7766c7da9491eba41896662a9e 808 Gene3D G3DSA:3.20.20.330 11 335 1.5E-106 T 11-11-2016 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 Gferi_RS07250 0256033a874cfbea3c4e9b281cbd5080 562 SUPERFAMILY SSF56112 204 313 1.83E-28 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS07250 0256033a874cfbea3c4e9b281cbd5080 562 SUPERFAMILY SSF56112 97 160 1.83E-28 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS07250 0256033a874cfbea3c4e9b281cbd5080 562 Pfam PF03109 ABC1 family 115 232 8.5E-35 T 11-11-2016 IPR004147 UbiB domain Gferi_RS07250 0256033a874cfbea3c4e9b281cbd5080 562 Gene3D G3DSA:3.90.1200.10 198 221 3.3E-7 T 11-11-2016 Gferi_RS07250 0256033a874cfbea3c4e9b281cbd5080 562 Gene3D G3DSA:3.90.1200.10 262 313 3.3E-7 T 11-11-2016 Gferi_RS21550 ef60b6bb1454b6cd91f54a474482e6d9 426 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 18 243 1.0E-29 T 11-11-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 Gferi_RS21550 ef60b6bb1454b6cd91f54a474482e6d9 426 Gene3D G3DSA:3.20.20.70 16 407 2.1E-61 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS21550 ef60b6bb1454b6cd91f54a474482e6d9 426 SUPERFAMILY SSF51395 16 391 6.2E-49 T 11-11-2016 Gferi_RS17235 c66b56f6441b62df12d28452cc494e66 93 Gene3D G3DSA:3.30.1340.10 8 93 4.4E-29 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS17235 c66b56f6441b62df12d28452cc494e66 93 SUPERFAMILY SSF55594 8 93 5.1E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS17235 c66b56f6441b62df12d28452cc494e66 93 Pfam PF00381 PTS HPr component phosphorylation site 9 88 1.7E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS17235 c66b56f6441b62df12d28452cc494e66 93 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 9 87 1.2E-25 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS17235 c66b56f6441b62df12d28452cc494e66 93 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 19 26 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS17235 c66b56f6441b62df12d28452cc494e66 93 PRINTS PR00107 Phosphocarrier protein signature 19 35 4.1E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS17235 c66b56f6441b62df12d28452cc494e66 93 PRINTS PR00107 Phosphocarrier protein signature 44 59 4.1E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS17235 c66b56f6441b62df12d28452cc494e66 93 PRINTS PR00107 Phosphocarrier protein signature 59 76 4.1E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS19935 da2942663d89c70931c52044cc305af9 306 Pfam PF02007 Tetrahydromethanopterin S-methyltransferase MtrH subunit 7 293 2.5E-79 T 11-11-2016 IPR023467 Tetrahydromethanopterin S-methyltransferase, subunit H/Methyltransferase Mtx, subunit H GO:0006730|GO:0008168 Gferi_RS19935 da2942663d89c70931c52044cc305af9 306 Gene3D G3DSA:3.20.20.20 73 228 1.2E-7 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19935 da2942663d89c70931c52044cc305af9 306 ProDom PD009948 METHYLTRANSFERASE SUBUNIT H TRANSFERASE M TETRAHYDROMETHANOPTERIN S-METHYLTRANSFERASE N5-METHYLTETRAHYDROMETHANOPTERIN--COENZYME METHANOGENESIS ONE-CARBON 73 305 5.0E-101 T 11-11-2016 IPR023467 Tetrahydromethanopterin S-methyltransferase, subunit H/Methyltransferase Mtx, subunit H GO:0006730|GO:0008168 Gferi_RS19935 da2942663d89c70931c52044cc305af9 306 SUPERFAMILY SSF51717 24 266 9.22E-17 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS05325 fd7d29d1159e74a31ed25c07cb3019a8 210 Gene3D G3DSA:3.40.630.30 23 208 8.2E-17 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS05325 fd7d29d1159e74a31ed25c07cb3019a8 210 Pfam PF00583 Acetyltransferase (GNAT) family 83 186 8.2E-6 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS05325 fd7d29d1159e74a31ed25c07cb3019a8 210 SUPERFAMILY SSF55729 22 198 1.68E-17 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Pfam PF00571 CBS domain 247 291 4.7E-5 T 11-11-2016 IPR000644 CBS domain Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Pfam PF00571 CBS domain 78 118 1.4E-8 T 11-11-2016 IPR000644 CBS domain Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Gene3D G3DSA:3.10.580.10 247 292 8.6E-21 T 11-11-2016 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Gene3D G3DSA:3.10.580.10 68 129 8.6E-21 T 11-11-2016 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 SUPERFAMILY SSF64182 296 532 7.95E-71 T 11-11-2016 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 SUPERFAMILY SSF64182 4 68 7.95E-71 T 11-11-2016 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 SMART SM01131 408 533 3.4E-41 T 11-11-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Pfam PF01368 DHH family 4 373 3.9E-28 T 11-11-2016 IPR001667 DDH domain Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 SMART SM00116 74 122 2.3E-4 T 11-11-2016 IPR000644 CBS domain Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 SMART SM00116 247 295 1.8 T 11-11-2016 IPR000644 CBS domain Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Pfam PF07085 DRTGG domain 135 236 6.1E-18 T 11-11-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Gene3D G3DSA:3.90.1640.10 3 67 7.6E-61 T 11-11-2016 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Gene3D G3DSA:3.90.1640.10 298 414 7.6E-61 T 11-11-2016 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Gene3D G3DSA:3.40.1390.20 131 246 3.6E-20 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 SUPERFAMILY SSF54631 216 292 2.11E-20 T 11-11-2016 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 SUPERFAMILY SSF54631 66 138 2.11E-20 T 11-11-2016 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 Pfam PF02833 DHHA2 domain 409 531 4.2E-18 T 11-11-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 Gferi_RS16670 3815af2f91ed29e0ce421c904e9488ea 537 SUPERFAMILY SSF75138 131 243 1.02E-17 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 326 339 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 Gene3D G3DSA:1.10.8.60 476 527 9.7E-19 T 11-11-2016 Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 515 524 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 171 235 1.1E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 SUPERFAMILY SSF52540 302 541 5.33E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 SUPERFAMILY SSF55785 154 268 1.75E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 Gene3D G3DSA:1.10.10.60 528 612 6.9E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 Pfam PF13426 PAS domain 179 273 2.8E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 Gene3D G3DSA:3.10.580.10 11 121 2.0E-14 T 11-11-2016 Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 SUPERFAMILY SSF54631 10 120 2.2E-14 T 11-11-2016 Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 Pfam PF00571 CBS domain 14 55 0.0033 T 11-11-2016 IPR000644 CBS domain Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 SMART SM00091 169 235 0.0016 T 11-11-2016 IPR000014 PAS domain Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 SMART SM00382 322 466 3.3E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 Gene3D G3DSA:3.40.50.300 301 475 7.1E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 SUPERFAMILY SSF46689 566 612 9.56E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 Gene3D G3DSA:3.30.450.20 167 268 7.9E-13 T 11-11-2016 Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 389 404 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS03380 b38453ea4d2afca4ff53e4af98cd7408 620 Pfam PF00158 Sigma-54 interaction domain 302 469 7.5E-65 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF81296 628 711 2.91E-11 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF53300 60 261 1.78E-26 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF81296 973 1069 1.08E-14 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF81296 450 522 6.2E-11 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF01833 IPT/TIG domain 806 887 3.6E-13 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF01833 IPT/TIG domain 896 978 2.6E-10 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF01833 IPT/TIG domain 630 711 1.5E-8 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF01833 IPT/TIG domain 540 621 1.3E-11 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF01833 IPT/TIG domain 450 533 1.9E-10 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF01833 IPT/TIG domain 719 801 2.7E-11 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF01833 IPT/TIG domain 367 445 2.7E-13 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF01833 IPT/TIG domain 987 1069 7.2E-10 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00327 68 266 1.4E-19 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:3.40.50.410 68 265 8.7E-23 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00429 366 447 1.2E-4 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00429 986 1070 10.0 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00429 718 802 2.2E-7 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00429 895 979 5.8 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00429 805 888 2.1E-4 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00429 449 534 1.9E-5 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00429 629 712 0.65 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SMART SM00429 538 622 1.9E-5 T 11-11-2016 IPR002909 IPT domain GO:0005515 Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Pfam PF00092 von Willebrand factor type A domain 70 249 3.6E-19 T 11-11-2016 IPR002035 von Willebrand factor, type A Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:2.60.40.10 540 623 2.6E-15 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF81296 805 881 8.5E-14 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF81296 541 623 7.22E-12 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF81296 361 442 9.92E-12 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF81296 894 978 6.9E-13 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 SUPERFAMILY SSF81296 718 802 4.11E-11 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:2.60.40.10 366 446 3.6E-18 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:2.60.40.10 450 533 1.0E-16 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:2.60.40.10 895 979 3.7E-18 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:2.60.40.10 629 712 1.2E-15 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:2.60.40.10 805 888 2.0E-19 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:2.60.40.10 986 1069 2.2E-18 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS21815 7b2be28b2611fd226feb1d2b8a9e7408 1071 Gene3D G3DSA:2.60.40.10 719 802 1.2E-13 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 176 192 6.6E-9 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 192 207 6.6E-9 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 ProSitePatterns PS00042 Crp-type HTH domain signature. 178 201 - T 11-11-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 Pfam PF00027 Cyclic nucleotide-binding domain 32 119 6.9E-19 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 SMART SM00100 13 131 2.1E-19 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 Gene3D G3DSA:2.60.120.10 9 146 2.0E-35 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 SUPERFAMILY SSF51206 7 145 1.07E-34 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 Pfam PF13545 Crp-like helix-turn-helix domain 152 224 1.3E-19 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 SMART SM00419 170 218 3.8E-14 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 Gene3D G3DSA:1.10.10.10 148 226 2.2E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02425 61ba827e2bfd6e800dfc6b85b11f480d 228 SUPERFAMILY SSF46785 150 226 1.6E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17585 d836380e514a3f543f741677aa1a95c0 394 Pfam PF01594 Domain of unknown function DUF20 32 374 9.5E-53 T 11-11-2016 IPR002549 Transmembrane protein TqsA-like Gferi_RS25360 724cf799babd13526eca868063a464eb 498 Gene3D G3DSA:3.20.20.140 440 495 1.2E-7 T 11-11-2016 Gferi_RS25360 724cf799babd13526eca868063a464eb 498 Gene3D G3DSA:2.30.40.10 2 68 7.0E-16 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS25360 724cf799babd13526eca868063a464eb 498 Gene3D G3DSA:2.30.40.10 186 208 7.0E-16 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS25360 724cf799babd13526eca868063a464eb 498 Gene3D G3DSA:3.20.20.140 257 439 5.8E-26 T 11-11-2016 Gferi_RS25360 724cf799babd13526eca868063a464eb 498 SUPERFAMILY SSF51338 455 496 1.15E-15 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS25360 724cf799babd13526eca868063a464eb 498 SUPERFAMILY SSF51338 5 48 1.15E-15 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS25360 724cf799babd13526eca868063a464eb 498 SUPERFAMILY SSF51556 47 108 4.42E-34 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS25360 724cf799babd13526eca868063a464eb 498 SUPERFAMILY SSF51556 180 456 4.42E-34 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS25360 724cf799babd13526eca868063a464eb 498 Pfam PF07969 Amidohydrolase family 37 496 9.0E-86 T 11-11-2016 IPR013108 Amidohydrolase 3 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 SUPERFAMILY SSF48163 320 487 1.44E-35 T 11-11-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 SUPERFAMILY SSF52374 3 316 8.31E-113 T 11-11-2016 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 PRINTS PR00987 Glutamyl-tRNA synthetase signature 215 223 1.3E-26 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.3E-26 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.3E-26 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.3E-26 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 PRINTS PR00987 Glutamyl-tRNA synthetase signature 199 209 1.3E-26 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 Gene3D G3DSA:3.40.50.620 3 68 3.4E-49 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 Gene3D G3DSA:3.40.50.620 201 250 3.4E-49 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 Gene3D G3DSA:3.90.800.10 69 200 4.8E-44 T 11-11-2016 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 488 32.713 T 11-11-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 Gene3D G3DSA:1.10.10.350 390 485 5.7E-15 T 11-11-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 325 1.5E-110 T 11-11-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 Gene3D G3DSA:1.10.1160.10 252 334 2.5E-35 T 11-11-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 Gferi_RS17255 f452d3e30ffcece4edea563591c6100f 492 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 485 1.9E-171 T 11-11-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Gferi_RS22055 d8fbbd22a4ccde5dc942fa4fa321ca59 280 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 202 271 3.5E-6 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS22055 d8fbbd22a4ccde5dc942fa4fa321ca59 280 Gene3D G3DSA:3.30.465.10 63 167 1.7E-17 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Gferi_RS22055 d8fbbd22a4ccde5dc942fa4fa321ca59 280 SUPERFAMILY SSF55447 178 273 6.67E-14 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS22055 d8fbbd22a4ccde5dc942fa4fa321ca59 280 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 5 168 8.6E-30 T 11-11-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 Gferi_RS22055 d8fbbd22a4ccde5dc942fa4fa321ca59 280 SUPERFAMILY SSF56176 3 168 1.45E-32 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Gferi_RS22055 d8fbbd22a4ccde5dc942fa4fa321ca59 280 Gene3D G3DSA:3.30.390.50 197 271 1.1E-8 T 11-11-2016 Gferi_RS22055 d8fbbd22a4ccde5dc942fa4fa321ca59 280 Gene3D G3DSA:3.30.43.10 3 57 5.4E-10 T 11-11-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Gferi_RS22055 d8fbbd22a4ccde5dc942fa4fa321ca59 280 SMART SM01092 180 274 5.2E-7 T 11-11-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal Gferi_RS19200 e614b3978c67b26d2aeb3b9d2dce1700 436 Gene3D G3DSA:3.40.50.980 96 245 1.3E-11 T 11-11-2016 Gferi_RS19200 e614b3978c67b26d2aeb3b9d2dce1700 436 Pfam PF00501 AMP-binding enzyme 70 289 1.5E-12 T 11-11-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 Gferi_RS19200 e614b3978c67b26d2aeb3b9d2dce1700 436 SUPERFAMILY SSF56801 49 394 1.44E-30 T 11-11-2016 Gferi_RS26320 612dbd11c9a4b7dbd8d584d892611304 341 PIRSF PIRSF006268 1 335 1.8E-113 T 11-11-2016 IPR024932 Flavin transferase ApbE GO:0017013 Gferi_RS26320 612dbd11c9a4b7dbd8d584d892611304 341 Pfam PF02424 ApbE family 34 312 1.5E-89 T 11-11-2016 IPR024932 Flavin transferase ApbE GO:0017013 Gferi_RS26320 612dbd11c9a4b7dbd8d584d892611304 341 SUPERFAMILY SSF143631 27 330 2.04E-100 T 11-11-2016 IPR003374 ApbE-like domain Gferi_RS07120 9d3e03156be17461b64cb3d24c8a2c22 552 SMART SM00849 20 215 1.4E-22 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS07120 9d3e03156be17461b64cb3d24c8a2c22 552 Pfam PF00753 Metallo-beta-lactamase superfamily 18 108 1.9E-14 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS07120 9d3e03156be17461b64cb3d24c8a2c22 552 SUPERFAMILY SSF56281 8 424 2.1E-95 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS07120 9d3e03156be17461b64cb3d24c8a2c22 552 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 9 550 5.7E-198 T 11-11-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 Gferi_RS07120 9d3e03156be17461b64cb3d24c8a2c22 552 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 355 411 2.5E-8 T 11-11-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Gferi_RS07120 9d3e03156be17461b64cb3d24c8a2c22 552 Hamap MF_01491 Ribonuclease J [rnj]. 3 552 46.945 T 11-11-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 Gferi_RS07120 9d3e03156be17461b64cb3d24c8a2c22 552 Gene3D G3DSA:3.60.15.10 4 255 7.1E-79 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS07120 9d3e03156be17461b64cb3d24c8a2c22 552 PIRSF PIRSF004803 1 552 7.1E-243 T 11-11-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 Gferi_RS06855 fc0b3ed8dca7813f7603ac6c191bb728 456 Gene3D G3DSA:3.40.190.10 215 369 2.9E-10 T 11-11-2016 Gferi_RS06855 fc0b3ed8dca7813f7603ac6c191bb728 456 Pfam PF01547 Bacterial extracellular solute-binding protein 73 356 1.7E-11 T 11-11-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 Gferi_RS06855 fc0b3ed8dca7813f7603ac6c191bb728 456 SUPERFAMILY SSF53850 59 447 5.49E-34 T 11-11-2016 Gferi_RS06855 fc0b3ed8dca7813f7603ac6c191bb728 456 Gene3D G3DSA:3.40.190.10 59 214 5.6E-17 T 11-11-2016 Gferi_RS19880 db1adfc27d46a469abc221dc47aafc7f 117 Gene3D G3DSA:1.10.10.10 4 90 8.8E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19880 db1adfc27d46a469abc221dc47aafc7f 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 26 37 3.1E-16 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19880 db1adfc27d46a469abc221dc47aafc7f 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 3.1E-16 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19880 db1adfc27d46a469abc221dc47aafc7f 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 3.1E-16 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19880 db1adfc27d46a469abc221dc47aafc7f 117 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 3.1E-16 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19880 db1adfc27d46a469abc221dc47aafc7f 117 SMART SM00418 5 83 8.5E-23 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19880 db1adfc27d46a469abc221dc47aafc7f 117 Pfam PF01022 Bacterial regulatory protein, arsR family 13 57 7.8E-17 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19880 db1adfc27d46a469abc221dc47aafc7f 117 SUPERFAMILY SSF46785 2 102 3.82E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02360 56d54dcafb28d52cbd53eadf452cddae 343 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 2 330 30.451 T 11-11-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Gferi_RS02360 56d54dcafb28d52cbd53eadf452cddae 343 PIRSF PIRSF005485 1 341 2.2E-109 T 11-11-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Gferi_RS02360 56d54dcafb28d52cbd53eadf452cddae 343 Gene3D G3DSA:1.10.10.10 2 84 8.6E-37 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02360 56d54dcafb28d52cbd53eadf452cddae 343 SUPERFAMILY SSF46785 3 84 3.2E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02360 56d54dcafb28d52cbd53eadf452cddae 343 SUPERFAMILY SSF55781 72 338 6.08E-61 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS02360 56d54dcafb28d52cbd53eadf452cddae 343 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 5 336 2.6E-106 T 11-11-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Gferi_RS02360 56d54dcafb28d52cbd53eadf452cddae 343 Gene3D G3DSA:3.30.450.40 177 339 9.9E-45 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS02360 56d54dcafb28d52cbd53eadf452cddae 343 Pfam PF01628 HrcA protein C terminal domain 105 322 8.7E-61 T 11-11-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 Gferi_RS03075 8aa42275b0c42a84b78c9fb0e94a792c 111 Gene3D G3DSA:3.30.750.24 2 110 2.5E-34 T 11-11-2016 IPR002645 STAS domain Gferi_RS03075 8aa42275b0c42a84b78c9fb0e94a792c 111 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 104 1.4E-28 T 11-11-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 Gferi_RS03075 8aa42275b0c42a84b78c9fb0e94a792c 111 Pfam PF01740 STAS domain 5 105 2.3E-20 T 11-11-2016 IPR002645 STAS domain Gferi_RS03075 8aa42275b0c42a84b78c9fb0e94a792c 111 SUPERFAMILY SSF52091 2 111 1.83E-27 T 11-11-2016 IPR002645 STAS domain Gferi_RS03075 8aa42275b0c42a84b78c9fb0e94a792c 111 TIGRFAM TIGR02886 spore_II_AA: anti-sigma F factor antagonist 4 108 8.5E-39 T 11-11-2016 IPR014237 Anti-sigma F factor antagonist GO:0006355|GO:0030435|GO:0045152 Gferi_RS09915 f7d30aae120f6aef8dff3e1489d7807a 276 Pfam PF03180 NLPA lipoprotein 41 276 8.9E-98 T 11-11-2016 IPR004872 Lipoprotein NlpA family Gferi_RS09915 f7d30aae120f6aef8dff3e1489d7807a 276 SUPERFAMILY SSF53850 41 276 8.28E-87 T 11-11-2016 Gferi_RS09915 f7d30aae120f6aef8dff3e1489d7807a 276 PIRSF PIRSF002854 1 276 3.0E-109 T 11-11-2016 IPR004872 Lipoprotein NlpA family Gferi_RS09915 f7d30aae120f6aef8dff3e1489d7807a 276 Gene3D G3DSA:3.40.190.10 41 168 6.6E-54 T 11-11-2016 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 11-11-2016 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 Gene3D G3DSA:3.40.50.450 1 211 1.5E-72 T 11-11-2016 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 1 319 45.942 T 11-11-2016 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 6 25 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 212 224 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 1.7E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 3 300 1.3E-127 T 11-11-2016 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 PIRSF PIRSF000532 1 320 1.5E-118 T 11-11-2016 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 SUPERFAMILY SSF53784 1 318 3.14E-116 T 11-11-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20960 1a7ffb30f133419f7e7b5d485248ab6a 320 Pfam PF00365 Phosphofructokinase 3 276 6.0E-107 T 11-11-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS17450 718fd66aa8c314cc78fd7152c4d3cbc3 103 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 1 96 22.527 T 11-11-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17450 718fd66aa8c314cc78fd7152c4d3cbc3 103 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 102 4.5E-42 T 11-11-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17450 718fd66aa8c314cc78fd7152c4d3cbc3 103 SMART SM00739 2 29 2.4E-6 T 11-11-2016 IPR005824 KOW Gferi_RS17450 718fd66aa8c314cc78fd7152c4d3cbc3 103 SUPERFAMILY SSF50104 1 100 1.13E-37 T 11-11-2016 IPR008991 Translation protein SH3-like domain Gferi_RS17450 718fd66aa8c314cc78fd7152c4d3cbc3 103 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 102 9.3E-29 T 11-11-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17450 718fd66aa8c314cc78fd7152c4d3cbc3 103 Pfam PF00467 KOW motif 5 36 3.4E-9 T 11-11-2016 IPR005824 KOW Gferi_RS17450 718fd66aa8c314cc78fd7152c4d3cbc3 103 Gene3D G3DSA:2.30.30.30 1 90 5.6E-29 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 Gferi_RS17450 718fd66aa8c314cc78fd7152c4d3cbc3 103 ProSitePatterns PS01108 Ribosomal protein L24 signature. 6 23 - T 11-11-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS12140 8b2ec8899594ca6433737667c0d5cc1d 191 Pfam PF07670 Nucleoside recognition 43 149 1.2E-11 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS20180 6e333836f42b9f1f6d7e748443789285 86 Pfam PF04023 FeoA domain 12 82 3.7E-16 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Gferi_RS20180 6e333836f42b9f1f6d7e748443789285 86 SUPERFAMILY SSF50037 16 84 1.74E-18 T 11-11-2016 IPR008988 Transcriptional repressor, C-terminal Gferi_RS20180 6e333836f42b9f1f6d7e748443789285 86 SMART SM00899 11 83 3.0E-16 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Gferi_RS11580 8e3765abc7fc77e7d215305c644cbe9c 369 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 8 363 8.4E-78 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS11580 8e3765abc7fc77e7d215305c644cbe9c 369 Pfam PF03845 Spore germination protein 10 325 6.6E-64 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS20370 7096b230882f0e390aa0bd2ce2088b97 162 SMART SM01321 18 150 5.0E-15 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS20370 7096b230882f0e390aa0bd2ce2088b97 162 Pfam PF01797 Transposase IS200 like 59 150 1.2E-5 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS20370 7096b230882f0e390aa0bd2ce2088b97 162 Gene3D G3DSA:3.30.70.1290 22 152 3.3E-13 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS20370 7096b230882f0e390aa0bd2ce2088b97 162 SUPERFAMILY SSF143422 18 156 3.27E-20 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 130 144 4.0E-16 T 11-11-2016 Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 221 233 4.0E-16 T 11-11-2016 Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 96 112 4.0E-16 T 11-11-2016 Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 257 281 4.0E-16 T 11-11-2016 Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 Pfam PF12950 TaqI-like C-terminal specificity domain 428 551 2.8E-24 T 11-11-2016 IPR025931 TaqI-like C-terminal specificity domain Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 Pfam PF02384 N-6 DNA Methylase 76 368 2.3E-22 T 11-11-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 SUPERFAMILY SSF53335 75 372 1.04E-55 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 Gene3D G3DSA:3.40.50.150 98 356 3.4E-47 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 224 230 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS04270 b5effeb7e2795fdae4f8e3bdc194eb04 622 Gene3D G3DSA:3.90.220.10 409 550 3.8E-4 T 11-11-2016 IPR023135 N6 adenine-specific DNA methyltransferase, TaqI class, C-terminal Gferi_RS26055 fe19987b750dbb25f30a3ded36668982 93 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 47 1.0E-15 T 11-11-2016 Gferi_RS26055 fe19987b750dbb25f30a3ded36668982 93 Pfam PF00936 BMC domain 4 79 2.2E-27 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26055 fe19987b750dbb25f30a3ded36668982 93 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 21 40 - T 11-11-2016 IPR020808 Bacterial microcompartments protein, conserved site Gferi_RS26055 fe19987b750dbb25f30a3ded36668982 93 SUPERFAMILY SSF143414 3 89 4.97E-30 T 11-11-2016 Gferi_RS26055 fe19987b750dbb25f30a3ded36668982 93 SMART SM00877 3 79 1.4E-34 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS06440 0524be7bf70e549470eafe8cbcf769c3 77 Gene3D G3DSA:3.40.30.30 18 75 3.1E-4 T 11-11-2016 IPR009190 Protein of unknown function DUF1462 Gferi_RS02770 47660ff55b026889aeb2c7538c98ccc4 318 Pfam PF03956 Membrane protein of unknown function (DUF340) 128 313 2.1E-40 T 11-11-2016 IPR005642 Lysine exporter LysO Gferi_RS02770 47660ff55b026889aeb2c7538c98ccc4 318 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 158 313 9.0E-28 T 11-11-2016 IPR005642 Lysine exporter LysO Gferi_RS15640 5426bf60d00657e07123126bc75dd91d 326 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 6 320 3.9E-97 T 11-11-2016 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Gferi_RS15640 5426bf60d00657e07123126bc75dd91d 326 TIGRFAM TIGR03641 cas1_HMARI: CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP 4 326 2.6E-134 T 11-11-2016 IPR019858 CRISPR-associated protein Cas1, HMARI/TNEAP subtype GO:0004520|GO:0043571|GO:0046872 Gferi_RS15640 5426bf60d00657e07123126bc75dd91d 326 Pfam PF01867 CRISPR associated protein Cas1 5 280 1.4E-87 T 11-11-2016 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Gferi_RS15640 5426bf60d00657e07123126bc75dd91d 326 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 2 311 27.15 T 11-11-2016 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 Pfam PF00005 ABC transporter 284 417 5.4E-24 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 Pfam PF00005 ABC transporter 21 170 1.7E-23 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 SMART SM00382 29 219 3.7E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 SMART SM00382 289 465 1.4E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 SUPERFAMILY SSF52540 261 471 3.14E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 SUPERFAMILY SSF52540 2 230 1.26E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 Gene3D G3DSA:3.40.50.300 1 231 9.3E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 ProSitePatterns PS00211 ABC transporters family signature. 389 403 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22275 d406dcf32d9b910e39146a8045109e2b 500 Gene3D G3DSA:3.40.50.300 266 474 3.4E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05860 bc953d8f6da98cd6f9a5919e32dcec54 304 SUPERFAMILY SSF110581 4 301 1.44E-118 T 11-11-2016 Gferi_RS05860 bc953d8f6da98cd6f9a5919e32dcec54 304 Pfam PF04227 Indigoidine synthase A like protein 11 299 1.0E-137 T 11-11-2016 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 Gferi_RS05860 bc953d8f6da98cd6f9a5919e32dcec54 304 Hamap MF_01876 Pseudouridine-5'-phosphate glycosidase [psuG]. 10 303 44.781 T 11-11-2016 IPR007342 Pseudouridine-5'-phosphate glycosidase GO:0016798 KEGG: 00240+4.2.1.70|MetaCyc: PWY-6019 Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 368 8.7E-43 T 11-11-2016 IPR014031 Beta-ketoacyl synthase, C-terminal Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 Gene3D G3DSA:3.40.47.10 262 412 3.4E-68 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 SUPERFAMILY SSF53901 214 411 1.18E-77 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 SMART SM00825 Beta-ketoacyl synthase 5 413 1.5E-18 T 11-11-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 Gene3D G3DSA:3.40.47.10 2 257 6.2E-83 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 11-11-2016 IPR018201 Beta-ketoacyl synthase, active site Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 SUPERFAMILY SSF53901 3 251 2.05E-80 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 3 409 6.5E-203 T 11-11-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 246 1.2E-62 T 11-11-2016 IPR014030 Beta-ketoacyl synthase, N-terminal Gferi_RS01555 fcf0db65a93a2eb3d12be588f301ee67 413 PIRSF PIRSF000447 1 413 1.7E-191 T 11-11-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 PRINTS PR00116 Arginase signature 118 145 1.6E-39 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 PRINTS PR00116 Arginase signature 172 190 1.6E-39 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 PRINTS PR00116 Arginase signature 222 251 1.6E-39 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 PRINTS PR00116 Arginase signature 95 110 1.6E-39 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 PRINTS PR00116 Arginase signature 257 271 1.6E-39 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 Pfam PF00491 Arginase family 2 291 1.4E-67 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 SUPERFAMILY SSF52768 1 292 2.16E-79 T 11-11-2016 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 TIGRFAM TIGR01229 rocF_arginase: arginase 4 293 6.6E-76 T 11-11-2016 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 PIRSF PIRSF036979 1 298 4.6E-37 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS12465 628c44918c6f5c7d9ba0de96e06dcab1 299 Gene3D G3DSA:3.40.800.10 2 295 1.8E-83 T 11-11-2016 IPR023696 Ureohydrolase domain Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 6.2E-67 T 11-11-2016 Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.6E-16 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.6E-16 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.6E-16 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 192 0.0079 T 11-11-2016 Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 SUPERFAMILY SSF51735 6 249 7.12E-86 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 Gene3D G3DSA:3.40.50.720 3 249 6.2E-88 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 8.6E-45 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.6E-45 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.6E-45 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.6E-45 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.6E-45 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS27145 447fb599f97c3c6001417aefb0d782cd 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 8.6E-45 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS10730 34b434b7825000b8dcf33322526de2a0 285 SUPERFAMILY SSF53448 1 284 2.7E-85 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS10730 34b434b7825000b8dcf33322526de2a0 285 Gene3D G3DSA:3.90.550.10 1 264 3.0E-64 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS10730 34b434b7825000b8dcf33322526de2a0 285 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 285 4.1E-142 T 11-11-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 Gferi_RS10730 34b434b7825000b8dcf33322526de2a0 285 Pfam PF00483 Nucleotidyl transferase 2 238 2.2E-69 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS01055 c1035adb2006e9b376f57ffdc9c71dd2 289 Pfam PF14279 HNH endonuclease 7 55 5.5E-12 T 11-11-2016 IPR029471 HNH endonuclease 5 Gferi_RS17715 b809b102365bb7ec39a46ba92e6b2ede 161 Gene3D G3DSA:3.10.180.10 22 138 1.5E-15 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS17715 b809b102365bb7ec39a46ba92e6b2ede 161 SUPERFAMILY SSF54593 18 145 8.59E-19 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS17715 b809b102365bb7ec39a46ba92e6b2ede 161 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 25 138 1.1E-12 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Gferi_RS22355 6bceb16b9d4f9a4101be49f493c64e64 690 Pfam PF01968 Hydantoinase/oxoprolinase 204 490 3.8E-88 T 11-11-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Gferi_RS22355 6bceb16b9d4f9a4101be49f493c64e64 690 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 4 182 2.5E-43 T 11-11-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Gferi_RS22355 6bceb16b9d4f9a4101be49f493c64e64 690 SUPERFAMILY SSF53067 4 80 2.29E-5 T 11-11-2016 Gferi_RS22355 6bceb16b9d4f9a4101be49f493c64e64 690 SUPERFAMILY SSF53067 384 483 2.29E-5 T 11-11-2016 Gferi_RS22355 6bceb16b9d4f9a4101be49f493c64e64 690 SUPERFAMILY SSF53067 267 343 2.29E-5 T 11-11-2016 Gferi_RS12250 90d7e2474b1dad5e988ebf444ff327bd 205 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 100 180 1.7E-19 T 11-11-2016 IPR020057 Ribosomal protein L25, beta domain Gferi_RS12250 90d7e2474b1dad5e988ebf444ff327bd 205 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 2 95 9.0E-19 T 11-11-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Gferi_RS12250 90d7e2474b1dad5e988ebf444ff327bd 205 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 183 24.411 T 11-11-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Gferi_RS12250 90d7e2474b1dad5e988ebf444ff327bd 205 Gene3D G3DSA:2.40.240.10 5 95 1.0E-27 T 11-11-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS12250 90d7e2474b1dad5e988ebf444ff327bd 205 Gene3D G3DSA:2.170.120.20 99 183 2.1E-19 T 11-11-2016 IPR020057 Ribosomal protein L25, beta domain Gferi_RS12250 90d7e2474b1dad5e988ebf444ff327bd 205 Pfam PF01386 Ribosomal L25p family 6 92 5.8E-24 T 11-11-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Gferi_RS12250 90d7e2474b1dad5e988ebf444ff327bd 205 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 180 4.6E-45 T 11-11-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Gferi_RS12250 90d7e2474b1dad5e988ebf444ff327bd 205 SUPERFAMILY SSF50715 10 180 1.59E-45 T 11-11-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS00985 2f9ba30d2e8c751078f577bbf8b640e3 515 PIRSF PIRSF004862 1 515 9.6E-112 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Gferi_RS00985 2f9ba30d2e8c751078f577bbf8b640e3 515 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 4 515 2.4E-79 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Gferi_RS00985 2f9ba30d2e8c751078f577bbf8b640e3 515 Pfam PF01514 Secretory protein of YscJ/FliF family 32 220 8.5E-56 T 11-11-2016 IPR006182 Secretory protein YscJ/FliF Gferi_RS00985 2f9ba30d2e8c751078f577bbf8b640e3 515 PRINTS PR01009 Flagellar M-ring protein signature 342 366 6.5E-13 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Gferi_RS00985 2f9ba30d2e8c751078f577bbf8b640e3 515 PRINTS PR01009 Flagellar M-ring protein signature 153 167 6.5E-13 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Gferi_RS00985 2f9ba30d2e8c751078f577bbf8b640e3 515 PRINTS PR01009 Flagellar M-ring protein signature 196 214 6.5E-13 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Gferi_RS00985 2f9ba30d2e8c751078f577bbf8b640e3 515 PRINTS PR01009 Flagellar M-ring protein signature 265 283 6.5E-13 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 Gferi_RS00985 2f9ba30d2e8c751078f577bbf8b640e3 515 Pfam PF08345 Flagellar M-ring protein C-terminal 252 399 1.7E-28 T 11-11-2016 IPR013556 Flagellar M-ring C-terminal Gferi_RS07885 8f0b6bb7c811d2ac9fe693a3576190e7 347 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 51 331 8.0E-66 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS07885 8f0b6bb7c811d2ac9fe693a3576190e7 347 PIRSF PIRSF006470 16 347 2.0E-70 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS17060 95662019e6f2344c498172c243e77c1d 175 SUPERFAMILY SSF52317 6 174 5.32E-45 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS17060 95662019e6f2344c498172c243e77c1d 175 Pfam PF01965 DJ-1/PfpI family 7 168 3.3E-43 T 11-11-2016 IPR002818 DJ-1/PfpI Gferi_RS17060 95662019e6f2344c498172c243e77c1d 175 Gene3D G3DSA:3.40.50.880 3 173 6.1E-48 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS17060 95662019e6f2344c498172c243e77c1d 175 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 8 172 3.2E-49 T 11-11-2016 IPR006286 Peptidase C56, PfpI Gferi_RS02695 ca03ceb99ecafd257e3b468bd73c9b34 251 TIGRFAM TIGR00552 nadE: NAD+ synthetase 13 245 1.1E-74 T 11-11-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 Gferi_RS02695 ca03ceb99ecafd257e3b468bd73c9b34 251 SUPERFAMILY SSF52402 5 245 4.89E-74 T 11-11-2016 Gferi_RS02695 ca03ceb99ecafd257e3b468bd73c9b34 251 Gene3D G3DSA:3.40.50.620 9 245 1.7E-76 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS02695 ca03ceb99ecafd257e3b468bd73c9b34 251 Pfam PF02540 NAD synthase 12 245 6.2E-71 T 11-11-2016 IPR022310 NAD/GMP synthase Gferi_RS02695 ca03ceb99ecafd257e3b468bd73c9b34 251 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 3 248 33.078 T 11-11-2016 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 Gferi_RS18990 fcfb5e68073d85a81be7d97874978ba1 224 SMART SM00862 146 220 5.3E-17 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS18990 fcfb5e68073d85a81be7d97874978ba1 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 220 6.0E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS18990 fcfb5e68073d85a81be7d97874978ba1 224 SUPERFAMILY SSF52172 1 173 1.85E-42 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS18990 fcfb5e68073d85a81be7d97874978ba1 224 Gene3D G3DSA:3.40.50.2300 1 125 4.3E-41 T 11-11-2016 Gferi_RS18990 fcfb5e68073d85a81be7d97874978ba1 224 Pfam PF00072 Response regulator receiver domain 4 113 1.6E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS18990 fcfb5e68073d85a81be7d97874978ba1 224 SMART SM00448 2 113 6.9E-38 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS18990 fcfb5e68073d85a81be7d97874978ba1 224 Gene3D G3DSA:1.10.10.10 126 222 1.1E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13445 be25d0c118d90d135018fcfb3a049c22 272 SUPERFAMILY SSF51658 1 268 2.09E-55 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS13445 be25d0c118d90d135018fcfb3a049c22 272 Pfam PF01261 Xylose isomerase-like TIM barrel 23 197 2.0E-12 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS13445 be25d0c118d90d135018fcfb3a049c22 272 Gene3D G3DSA:3.20.20.150 4 267 3.9E-34 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS20730 efa209539bacd82b77fd4b2d46077cbf 445 SMART SM00729 149 356 2.2E-22 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS20730 efa209539bacd82b77fd4b2d46077cbf 445 SMART SM00876 323 416 2.8E-9 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS20730 efa209539bacd82b77fd4b2d46077cbf 445 Pfam PF11823 Protein of unknown function (DUF3343) 9 75 2.0E-13 T 11-11-2016 IPR021778 Protein of unknown function DUF3343 Gferi_RS20730 efa209539bacd82b77fd4b2d46077cbf 445 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 327 417 5.5E-6 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 Gferi_RS20730 efa209539bacd82b77fd4b2d46077cbf 445 TIGRFAM TIGR03956 rSAM_HydE: [FeFe] hydrogenase H-cluster radical SAM maturase HydE 102 414 3.1E-94 T 11-11-2016 IPR024021 [FeFe]-hydrogenase maturation HydE, radical SAM Gferi_RS20730 efa209539bacd82b77fd4b2d46077cbf 445 Pfam PF04055 Radical SAM superfamily 153 309 2.2E-17 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS20730 efa209539bacd82b77fd4b2d46077cbf 445 SUPERFAMILY SSF102114 108 409 2.49E-59 T 11-11-2016 Gferi_RS20730 efa209539bacd82b77fd4b2d46077cbf 445 Gene3D G3DSA:3.20.20.70 109 410 1.0E-80 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS09205 df9e25d16bfc913a5a4e4a80743bf496 258 SMART SM00382 29 225 3.1E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09205 df9e25d16bfc913a5a4e4a80743bf496 258 Pfam PF00005 ABC transporter 20 164 1.9E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS09205 df9e25d16bfc913a5a4e4a80743bf496 258 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09205 df9e25d16bfc913a5a4e4a80743bf496 258 Gene3D G3DSA:3.40.50.300 2 228 4.9E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09205 df9e25d16bfc913a5a4e4a80743bf496 258 SUPERFAMILY SSF52540 3 226 5.67E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21475 8d83c3b27c03f842c66a33def49b47d3 871 Gene3D G3DSA:3.50.30.10 763 868 2.5E-27 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS21475 8d83c3b27c03f842c66a33def49b47d3 871 SUPERFAMILY SSF56059 1 342 9.89E-99 T 11-11-2016 Gferi_RS21475 8d83c3b27c03f842c66a33def49b47d3 871 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 18 315 3.7E-95 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS21475 8d83c3b27c03f842c66a33def49b47d3 871 Gene3D G3DSA:3.30.1490.20 1 185 3.4E-61 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS21475 8d83c3b27c03f842c66a33def49b47d3 871 Pfam PF00391 PEP-utilising enzyme, mobile domain 795 866 1.8E-21 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS21475 8d83c3b27c03f842c66a33def49b47d3 871 Gene3D G3DSA:3.30.470.20 186 334 6.6E-49 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS21475 8d83c3b27c03f842c66a33def49b47d3 871 SUPERFAMILY SSF52009 762 869 1.57E-27 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS26305 697dd775b88b5df89b6484b8fc2b7b18 91 Pfam PF03776 Septum formation topological specificity factor MinE 14 86 9.4E-26 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 Gferi_RS26305 697dd775b88b5df89b6484b8fc2b7b18 91 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 86 3.6E-20 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 Gferi_RS26305 697dd775b88b5df89b6484b8fc2b7b18 91 SUPERFAMILY SSF55229 31 89 4.97E-10 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 Gferi_RS26305 697dd775b88b5df89b6484b8fc2b7b18 91 Gene3D G3DSA:3.30.1070.10 30 90 1.7E-20 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 Gferi_RS26305 697dd775b88b5df89b6484b8fc2b7b18 91 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 90 15.741 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 Gferi_RS15370 3b27a162527edb1ef4940b7b74b566bc 158 SUPERFAMILY SSF75169 3 49 2.62E-19 T 11-11-2016 IPR027396 DsrEFH-like Gferi_RS15370 3b27a162527edb1ef4940b7b74b566bc 158 SUPERFAMILY SSF75169 100 156 2.62E-19 T 11-11-2016 IPR027396 DsrEFH-like Gferi_RS15370 3b27a162527edb1ef4940b7b74b566bc 158 Gene3D G3DSA:3.40.1260.10 2 158 1.6E-43 T 11-11-2016 IPR027396 DsrEFH-like Gferi_RS15370 3b27a162527edb1ef4940b7b74b566bc 158 Pfam PF13686 DsrE/DsrF/DrsH-like family 2 157 9.5E-57 T 11-11-2016 IPR032836 DsrE/DsrF/DrsH-like family Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 SMART SM00984 322 419 9.7E-20 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 323 417 9.3E-17 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 SUPERFAMILY SSF48179 208 298 2.89E-22 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 Gene3D G3DSA:3.40.50.720 2 229 3.5E-48 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 298 1.9E-22 T 11-11-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 SUPERFAMILY SSF52413 312 428 2.88E-19 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 6 415 9.3E-104 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 SUPERFAMILY SSF51735 6 194 1.25E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 Gene3D G3DSA:3.40.50.720 239 431 3.1E-42 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 6 189 3.1E-38 T 11-11-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 PIRSF PIRSF000124 5 431 4.9E-68 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Gferi_RS20525 a2edf46a5433358e27c8edeadf0ee6a3 432 PIRSF PIRSF500136 1 432 6.2E-109 T 11-11-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 Gferi_RS14280 a4d62633625a35703dc227beca43a64e 139 Pfam PF01381 Helix-turn-helix 7 61 1.4E-17 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS14280 a4d62633625a35703dc227beca43a64e 139 Gene3D G3DSA:1.10.260.40 1 64 4.2E-28 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS14280 a4d62633625a35703dc227beca43a64e 139 SMART SM00530 6 61 1.0E-16 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS14280 a4d62633625a35703dc227beca43a64e 139 SUPERFAMILY SSF47413 1 66 1.9E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS10595 3636d3b0fa3a1e7b7979f1cc8a05c536 405 Pfam PF12704 MacB-like periplasmic core domain 21 246 1.2E-28 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS10595 3636d3b0fa3a1e7b7979f1cc8a05c536 405 Pfam PF02687 FtsX-like permease family 286 398 9.8E-22 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS04200 b516d6921eb8293b42306a366bb10deb 230 SUPERFAMILY SSF143081 2 220 3.14E-75 T 11-11-2016 IPR003738 SOS response associated peptidase (SRAP) Gferi_RS04200 b516d6921eb8293b42306a366bb10deb 230 Gene3D G3DSA:3.90.1680.10 2 220 5.4E-74 T 11-11-2016 IPR003738 SOS response associated peptidase (SRAP) Gferi_RS04200 b516d6921eb8293b42306a366bb10deb 230 Pfam PF02586 SOS response associated peptidase (SRAP) 2 209 4.1E-68 T 11-11-2016 IPR003738 SOS response associated peptidase (SRAP) Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 11-11-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 SMART SM00937 62 177 1.2E-63 T 11-11-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 353 2.2E-167 T 11-11-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 355 41.49 T 11-11-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 Gene3D G3DSA:3.30.160.20 209 287 6.5E-34 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 Gene3D G3DSA:1.20.58.410 3 92 1.7E-22 T 11-11-2016 Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 Pfam PF00472 RF-1 domain 210 319 6.3E-43 T 11-11-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 Pfam PF03462 PCRF domain 8 202 5.4E-76 T 11-11-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 Gferi_RS11120 134b1f706bd809f708da7a2b8090d3b5 355 SUPERFAMILY SSF75620 8 351 7.98E-140 T 11-11-2016 Gferi_RS01660 37e59440d608ebc87b445b96da827d01 63 Pfam PF00830 Ribosomal L28 family 3 58 1.2E-21 T 11-11-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01660 37e59440d608ebc87b445b96da827d01 63 SUPERFAMILY SSF143800 1 61 2.94E-23 T 11-11-2016 Gferi_RS01660 37e59440d608ebc87b445b96da827d01 63 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 56 8.8E-24 T 11-11-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS01660 37e59440d608ebc87b445b96da827d01 63 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 62 18.456 T 11-11-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS01660 37e59440d608ebc87b445b96da827d01 63 Gene3D G3DSA:4.10.1160.10 19 63 6.2E-22 T 11-11-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17420 33ff70001d6394461b9aadc59773b1be 111 SUPERFAMILY SSF54843 2 110 2.75E-39 T 11-11-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17420 33ff70001d6394461b9aadc59773b1be 111 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 106 1.5E-39 T 11-11-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17420 33ff70001d6394461b9aadc59773b1be 111 Pfam PF00237 Ribosomal protein L22p/L17e 8 108 1.8E-28 T 11-11-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17420 33ff70001d6394461b9aadc59773b1be 111 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 27.033 T 11-11-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17420 33ff70001d6394461b9aadc59773b1be 111 Gene3D G3DSA:3.90.470.10 2 110 1.8E-38 T 11-11-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Gferi_RS20585 eaa36cf945b352326905c0f84e7770ad 185 Gene3D G3DSA:3.40.50.10420 1 184 5.2E-55 T 11-11-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain Gferi_RS20585 eaa36cf945b352326905c0f84e7770ad 185 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 1 178 1.8E-51 T 11-11-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase Gferi_RS20585 eaa36cf945b352326905c0f84e7770ad 185 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 1 178 4.7E-46 T 11-11-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase Gferi_RS20585 eaa36cf945b352326905c0f84e7770ad 185 PIRSF PIRSF006806 1 181 4.7E-49 T 11-11-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase Gferi_RS20585 eaa36cf945b352326905c0f84e7770ad 185 SUPERFAMILY SSF100950 2 184 4.46E-49 T 11-11-2016 Gferi_RS15500 a441da88ba3c88d2c7c078719fdb79b1 137 Gene3D G3DSA:1.10.10.10 18 132 1.9E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15500 a441da88ba3c88d2c7c078719fdb79b1 137 SUPERFAMILY SSF46785 20 123 2.43E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15500 a441da88ba3c88d2c7c078719fdb79b1 137 SMART SM00347 18 118 2.3E-15 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS15500 a441da88ba3c88d2c7c078719fdb79b1 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 128 1.2E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS15500 a441da88ba3c88d2c7c078719fdb79b1 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 74 1.2E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS15500 a441da88ba3c88d2c7c078719fdb79b1 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 42 58 1.2E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS15500 a441da88ba3c88d2c7c078719fdb79b1 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 94 1.2E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS15500 a441da88ba3c88d2c7c078719fdb79b1 137 Pfam PF01047 MarR family 26 82 9.5E-11 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21435 a0e93867027bbbffa018d88e15a29a31 168 Gene3D G3DSA:3.30.457.10 66 95 4.2E-4 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS21435 a0e93867027bbbffa018d88e15a29a31 168 Pfam PF07833 Copper amine oxidase N-terminal domain 62 105 6.2E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS20405 2fad59dc381dc08f258c6788e2e1fc31 631 Gene3D G3DSA:1.10.287.950 370 567 2.4E-40 T 11-11-2016 Gferi_RS20405 2fad59dc381dc08f258c6788e2e1fc31 631 SUPERFAMILY SSF58104 291 398 5.49E-5 T 11-11-2016 Gferi_RS20405 2fad59dc381dc08f258c6788e2e1fc31 631 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 393 3.0E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS20405 2fad59dc381dc08f258c6788e2e1fc31 631 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 470 499 3.0E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS20405 2fad59dc381dc08f258c6788e2e1fc31 631 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 468 3.0E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS20405 2fad59dc381dc08f258c6788e2e1fc31 631 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 417 599 4.7E-35 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS20405 2fad59dc381dc08f258c6788e2e1fc31 631 SUPERFAMILY SSF58104 372 601 1.31E-45 T 11-11-2016 Gferi_RS20405 2fad59dc381dc08f258c6788e2e1fc31 631 SMART SM00283 336 622 1.5E-23 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS19405 efc01505532d9c2d6eb1d60b8041633e 306 SUPERFAMILY SSF55073 95 237 5.49E-31 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS19405 efc01505532d9c2d6eb1d60b8041633e 306 Gene3D G3DSA:3.30.70.270 93 238 4.2E-34 T 11-11-2016 Gferi_RS19405 efc01505532d9c2d6eb1d60b8041633e 306 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 88 237 1.5E-37 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS19405 efc01505532d9c2d6eb1d60b8041633e 306 SUPERFAMILY SSF140500 247 299 1.31E-8 T 11-11-2016 Gferi_RS19405 efc01505532d9c2d6eb1d60b8041633e 306 Pfam PF09388 Spo0E like sporulation regulatory protein 251 292 8.3E-9 T 11-11-2016 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 Gferi_RS19405 efc01505532d9c2d6eb1d60b8041633e 306 SMART SM00267 79 243 9.0E-30 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS19405 efc01505532d9c2d6eb1d60b8041633e 306 Pfam PF00990 Diguanylate cyclase, GGDEF domain 90 237 2.7E-34 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.2E-34 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.2E-34 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.2E-34 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.2E-34 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.2E-34 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.2E-34 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 Gene3D G3DSA:3.40.50.720 2 251 1.2E-75 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 251 2.1E-56 T 11-11-2016 Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 SUPERFAMILY SSF51735 2 251 3.01E-73 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 1.8E-7 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.8E-7 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS21480 a59b4be70613cb441515f728f16002fb 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.8E-7 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 SUPERFAMILY SSF55874 297 462 1.15E-48 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 462 3.2E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 Pfam PF00512 His Kinase A (phospho-acceptor) domain 244 306 1.6E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 Gene3D G3DSA:1.10.287.130 234 293 3.5E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 SUPERFAMILY SSF47384 227 306 4.32E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 SMART SM00387 352 464 1.0E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 SMART SM00304 189 242 2.7E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 SMART SM00388 243 307 8.2E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 Gene3D G3DSA:3.30.565.10 294 462 2.6E-48 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 SUPERFAMILY SSF158472 189 239 2.88E-7 T 11-11-2016 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 Pfam PF00672 HAMP domain 170 239 1.0E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 3.1E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 3.1E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 3.1E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS20435 9411ff2d64dd9e1c75bd1c35df93e8f1 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 3.1E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS25315 1bdecaee169d955d3fa36f17f3b79175 340 SMART SM01329 3 327 1.8E-184 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS25315 1bdecaee169d955d3fa36f17f3b79175 340 Gene3D G3DSA:3.40.718.10 2 332 3.4E-140 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS25315 1bdecaee169d955d3fa36f17f3b79175 340 SUPERFAMILY SSF53659 2 331 8.83E-129 T 11-11-2016 Gferi_RS25315 1bdecaee169d955d3fa36f17f3b79175 340 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 223 242 - T 11-11-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Gferi_RS25315 1bdecaee169d955d3fa36f17f3b79175 340 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 3 327 1.3E-111 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS01925 dcdaab3a12f375d74d1152fbc6ef0670 105 PIRSF PIRSF018579 1 105 1.0E-39 T 11-11-2016 IPR009709 Protein of unknown function DUF1290 Gferi_RS01925 dcdaab3a12f375d74d1152fbc6ef0670 105 Pfam PF06947 Protein of unknown function (DUF1290) 15 99 1.2E-39 T 11-11-2016 IPR009709 Protein of unknown function DUF1290 Gferi_RS10165 796d954e5828fef7ba1987ea293630f8 149 Gene3D G3DSA:3.10.580.10 4 147 7.3E-32 T 11-11-2016 Gferi_RS10165 796d954e5828fef7ba1987ea293630f8 149 SUPERFAMILY SSF54631 2 147 3.66E-35 T 11-11-2016 Gferi_RS10165 796d954e5828fef7ba1987ea293630f8 149 Pfam PF00571 CBS domain 5 56 1.9E-12 T 11-11-2016 IPR000644 CBS domain Gferi_RS10165 796d954e5828fef7ba1987ea293630f8 149 Pfam PF00571 CBS domain 94 147 1.1E-15 T 11-11-2016 IPR000644 CBS domain Gferi_RS10165 796d954e5828fef7ba1987ea293630f8 149 SMART SM00116 12 60 2.2E-4 T 11-11-2016 IPR000644 CBS domain Gferi_RS10165 796d954e5828fef7ba1987ea293630f8 149 SMART SM00116 101 148 4.6E-8 T 11-11-2016 IPR000644 CBS domain Gferi_RS19375 2a9418adcf934d8c33e0c02697f97741 462 PIRSF PIRSF006603 1 459 2.3E-149 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS19375 2a9418adcf934d8c33e0c02697f97741 462 Pfam PF01554 MatE 250 409 5.4E-35 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS19375 2a9418adcf934d8c33e0c02697f97741 462 Pfam PF01554 MatE 24 185 4.2E-40 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS19375 2a9418adcf934d8c33e0c02697f97741 462 TIGRFAM TIGR00797 matE: MATE efflux family protein 24 424 2.8E-96 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS18290 2454ea2ea044e9d440c61862818c04ee 262 SUPERFAMILY SSF143414 177 248 1.96E-13 T 11-11-2016 Gferi_RS18290 2454ea2ea044e9d440c61862818c04ee 262 TIGRFAM TIGR04501 microcomp_PduB: microcompartment protein PduB 38 262 2.9E-124 T 11-11-2016 IPR030984 Microcompartment protein PduB GO:0005198 Gferi_RS18290 2454ea2ea044e9d440c61862818c04ee 262 Pfam PF00936 BMC domain 72 141 2.8E-9 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18290 2454ea2ea044e9d440c61862818c04ee 262 Pfam PF00936 BMC domain 178 244 3.8E-16 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18290 2454ea2ea044e9d440c61862818c04ee 262 PIRSF PIRSF012290 21 262 1.9E-99 T 11-11-2016 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0009605 Gferi_RS18290 2454ea2ea044e9d440c61862818c04ee 262 SMART SM00877 177 254 2.9E-17 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18290 2454ea2ea044e9d440c61862818c04ee 262 SMART SM00877 71 153 2.4E-10 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18290 2454ea2ea044e9d440c61862818c04ee 262 SUPERFAMILY SSF143414 71 149 1.44E-8 T 11-11-2016 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 Gene3D G3DSA:3.50.50.60 3 82 5.8E-63 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 Gene3D G3DSA:3.50.50.60 313 373 5.8E-63 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 Gene3D G3DSA:3.50.50.60 143 221 5.8E-63 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 SUPERFAMILY SSF51905 5 222 2.33E-59 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 SUPERFAMILY SSF51905 313 377 2.33E-59 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 Gene3D G3DSA:3.30.9.10 222 311 7.4E-19 T 11-11-2016 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 Gene3D G3DSA:3.30.9.10 89 142 7.4E-19 T 11-11-2016 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 SUPERFAMILY SSF54373 222 309 6.28E-7 T 11-11-2016 Gferi_RS00560 af7927e02a4aca85af6095ee69d695ad 382 Pfam PF01266 FAD dependent oxidoreductase 6 351 4.8E-66 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Gferi_RS15850 40aaa15e598c2e871c54345a11bee2b2 469 Gene3D G3DSA:3.30.565.10 371 467 6.1E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15850 40aaa15e598c2e871c54345a11bee2b2 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 467 9.2E-7 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15850 40aaa15e598c2e871c54345a11bee2b2 469 Pfam PF12282 Signal transduction histidine kinase 2 146 5.2E-35 T 11-11-2016 IPR022066 Signal transduction histidine kinase Gferi_RS15850 40aaa15e598c2e871c54345a11bee2b2 469 SMART SM00387 373 469 1.1E-6 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15850 40aaa15e598c2e871c54345a11bee2b2 469 Pfam PF07568 Histidine kinase 278 347 1.9E-22 T 11-11-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain Gferi_RS15850 40aaa15e598c2e871c54345a11bee2b2 469 Gene3D G3DSA:3.30.450.20 161 270 1.4E-7 T 11-11-2016 Gferi_RS15850 40aaa15e598c2e871c54345a11bee2b2 469 SUPERFAMILY SSF55874 355 465 2.88E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15850 40aaa15e598c2e871c54345a11bee2b2 469 SUPERFAMILY SSF55785 169 269 7.96E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS19975 13b2f3c40852f997690db6f9c25c24bd 400 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 314 6.0E-11 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS19975 13b2f3c40852f997690db6f9c25c24bd 400 SUPERFAMILY SSF111369 128 183 7.59E-6 T 11-11-2016 Gferi_RS19975 13b2f3c40852f997690db6f9c25c24bd 400 Gene3D G3DSA:2.40.50.100 221 253 5.1E-11 T 11-11-2016 Gferi_RS19975 13b2f3c40852f997690db6f9c25c24bd 400 Gene3D G3DSA:2.40.50.100 66 94 5.1E-11 T 11-11-2016 Gferi_RS19975 13b2f3c40852f997690db6f9c25c24bd 400 SUPERFAMILY SSF111369 50 117 5.23E-7 T 11-11-2016 Gferi_RS26965 b5345202e2907b2f68e79a0e58c84f11 368 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 13 363 2.3E-121 T 11-11-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 Gferi_RS26965 b5345202e2907b2f68e79a0e58c84f11 368 Pfam PF01098 Cell cycle protein 17 363 1.3E-97 T 11-11-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 Gferi_RS18430 66724e9af98dea4285cdf522cc5703f9 460 Gene3D G3DSA:3.90.1150.10 317 438 2.6E-36 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS18430 66724e9af98dea4285cdf522cc5703f9 460 Gene3D G3DSA:3.40.640.10 85 316 3.3E-81 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS18430 66724e9af98dea4285cdf522cc5703f9 460 SUPERFAMILY SSF53383 31 437 6.72E-127 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS18430 66724e9af98dea4285cdf522cc5703f9 460 Pfam PF00202 Aminotransferase class-III 51 435 5.9E-106 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS18430 66724e9af98dea4285cdf522cc5703f9 460 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 279 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS00075 524c7fdfe71de040bb1e979ae986d0fb 78 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 23 34 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS00075 524c7fdfe71de040bb1e979ae986d0fb 78 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 53 64 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS00075 524c7fdfe71de040bb1e979ae986d0fb 78 SUPERFAMILY SSF54862 11 76 2.23E-16 T 11-11-2016 Gferi_RS00075 524c7fdfe71de040bb1e979ae986d0fb 78 Pfam PF12838 4Fe-4S dicluster domain 23 64 5.0E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS00075 524c7fdfe71de040bb1e979ae986d0fb 78 Gene3D G3DSA:3.30.70.20 11 77 1.1E-14 T 11-11-2016 Gferi_RS10495 384b846c0422a5afdb6625ffc0fac877 582 Pfam PF00188 Cysteine-rich secretory protein family 139 249 2.8E-10 T 11-11-2016 IPR014044 CAP domain Gferi_RS10495 384b846c0422a5afdb6625ffc0fac877 582 Pfam PF00395 S-layer homology domain 528 572 2.1E-8 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS10495 384b846c0422a5afdb6625ffc0fac877 582 Pfam PF00395 S-layer homology domain 404 445 1.8E-11 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS10495 384b846c0422a5afdb6625ffc0fac877 582 Pfam PF00395 S-layer homology domain 464 503 5.4E-9 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS10495 384b846c0422a5afdb6625ffc0fac877 582 Gene3D G3DSA:3.40.33.10 132 223 2.9E-8 T 11-11-2016 IPR014044 CAP domain Gferi_RS10495 384b846c0422a5afdb6625ffc0fac877 582 SUPERFAMILY SSF55797 132 248 1.16E-11 T 11-11-2016 IPR014044 CAP domain Gferi_RS19770 bf3588ed44d0f46499465c41eea59361 409 Gene3D G3DSA:3.40.50.450 6 230 9.7E-51 T 11-11-2016 Gferi_RS19770 bf3588ed44d0f46499465c41eea59361 409 PIRSF PIRSF036483 3 406 8.3E-127 T 11-11-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 Gferi_RS19770 bf3588ed44d0f46499465c41eea59361 409 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 4 397 38.543 T 11-11-2016 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 Gferi_RS19770 bf3588ed44d0f46499465c41eea59361 409 SUPERFAMILY SSF53784 6 389 8.11E-87 T 11-11-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS19770 bf3588ed44d0f46499465c41eea59361 409 Pfam PF00365 Phosphofructokinase 6 322 1.6E-46 T 11-11-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Gferi_RS20065 e1b4fbcd5d484160b25d63865e8f631f 330 Gene3D G3DSA:3.40.50.300 7 258 1.4E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20065 e1b4fbcd5d484160b25d63865e8f631f 330 SUPERFAMILY SSF52540 37 311 9.2E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20065 e1b4fbcd5d484160b25d63865e8f631f 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 299 8.0E-18 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS20065 e1b4fbcd5d484160b25d63865e8f631f 330 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS20065 e1b4fbcd5d484160b25d63865e8f631f 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 318 2.6E-20 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS20065 e1b4fbcd5d484160b25d63865e8f631f 330 Pfam PF00005 ABC transporter 28 185 2.8E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS20065 e1b4fbcd5d484160b25d63865e8f631f 330 SMART SM00382 36 235 2.8E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS17160 4b473d89d41ab2eac22509119e8cdd36 158 Pfam PF02559 CarD-like/TRCF domain 2 109 2.2E-18 T 11-11-2016 IPR003711 CarD-like/TRCF domain Gferi_RS17160 4b473d89d41ab2eac22509119e8cdd36 158 SMART SM01058 1 111 1.2E-39 T 11-11-2016 IPR003711 CarD-like/TRCF domain Gferi_RS17160 4b473d89d41ab2eac22509119e8cdd36 158 SUPERFAMILY SSF141259 1 62 1.12E-14 T 11-11-2016 IPR003711 CarD-like/TRCF domain Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 SMART SM00984 313 415 7.3E-46 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 411 4.7E-143 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 313 413 1.7E-31 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 Gene3D G3DSA:1.20.5.100 202 227 2.7E-20 T 11-11-2016 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 184 1.5E-65 T 11-11-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 Gene3D G3DSA:3.40.50.720 1 201 3.6E-75 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 Gene3D G3DSA:3.40.50.720 229 430 4.9E-68 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 SUPERFAMILY SSF48179 198 292 7.14E-31 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 PIRSF PIRSF500134 1 431 7.6E-173 T 11-11-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 SUPERFAMILY SSF52413 299 426 1.57E-37 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 PIRSF PIRSF000124 1 430 7.4E-147 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 SUPERFAMILY SSF51735 1 191 5.44E-52 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02665 a485b79deb1b23601446c750f0e342fd 468 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 198 290 2.9E-37 T 11-11-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS24780 7fc7cd31257316fc5ee3e1712e5eec46 229 SUPERFAMILY SSF53335 5 195 1.24E-24 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS24780 7fc7cd31257316fc5ee3e1712e5eec46 229 Gene3D G3DSA:3.40.50.150 16 190 1.9E-22 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS24780 7fc7cd31257316fc5ee3e1712e5eec46 229 Pfam PF13847 Methyltransferase domain 43 156 1.3E-13 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS11620 914b05cf252bbdb2766bae3ca8db8713 189 TIGRFAM TIGR02228 sigpep_I_arch: signal peptidase I 7 167 1.1E-32 T 11-11-2016 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 Gferi_RS11620 914b05cf252bbdb2766bae3ca8db8713 189 Pfam PF00717 Peptidase S24-like 49 97 1.5E-7 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B Gferi_RS11620 914b05cf252bbdb2766bae3ca8db8713 189 PRINTS PR00728 Eukaryotic signal peptidase (S26B) family signature 49 64 6.9E-6 T 11-11-2016 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 Gferi_RS11620 914b05cf252bbdb2766bae3ca8db8713 189 PRINTS PR00728 Eukaryotic signal peptidase (S26B) family signature 106 117 6.9E-6 T 11-11-2016 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 Gferi_RS11620 914b05cf252bbdb2766bae3ca8db8713 189 SUPERFAMILY SSF51306 41 97 5.23E-9 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C Gferi_RS11620 914b05cf252bbdb2766bae3ca8db8713 189 Gene3D G3DSA:2.10.109.10 42 112 1.8E-6 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS08005 8b3b4b99dcc425b110caf78a5cb8f90d 285 SUPERFAMILY SSF52266 2 272 2.86E-80 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain Gferi_RS08005 8b3b4b99dcc425b110caf78a5cb8f90d 285 Pfam PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase 109 207 2.5E-7 T 11-11-2016 IPR005181 Sialate O-acetylesterase domain Gferi_RS26825 081bc7e410c89e2e49ef04a4dafd1757 393 Gene3D G3DSA:3.90.1150.10 249 373 2.2E-48 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS26825 081bc7e410c89e2e49ef04a4dafd1757 393 Gene3D G3DSA:3.40.640.10 17 248 4.2E-93 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS26825 081bc7e410c89e2e49ef04a4dafd1757 393 SUPERFAMILY SSF53383 3 377 6.12E-111 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS26825 081bc7e410c89e2e49ef04a4dafd1757 393 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 393 54.245 T 11-11-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 Gferi_RS26825 081bc7e410c89e2e49ef04a4dafd1757 393 PIRSF PIRSF005572 2 382 2.8E-134 T 11-11-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 Gferi_RS26825 081bc7e410c89e2e49ef04a4dafd1757 393 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 5 384 7.5E-185 T 11-11-2016 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 Gferi_RS26825 081bc7e410c89e2e49ef04a4dafd1757 393 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 194 213 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Gferi_RS26825 081bc7e410c89e2e49ef04a4dafd1757 393 Pfam PF00266 Aminotransferase class-V 5 367 1.1E-83 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS01790 28c61c9025b591296381b29826c448de 233 SUPERFAMILY SSF53167 4 231 1.19E-63 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS01790 28c61c9025b591296381b29826c448de 233 Pfam PF01048 Phosphorylase superfamily 4 230 6.5E-49 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS01790 28c61c9025b591296381b29826c448de 233 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 4 232 1.5E-61 T 11-11-2016 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 Gferi_RS01790 28c61c9025b591296381b29826c448de 233 Gene3D G3DSA:3.40.50.1580 4 232 7.0E-70 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS03275 c7d710a8b88ceff786abd8127d08cc10 141 Pfam PF08821 CGGC domain 6 119 6.4E-27 T 11-11-2016 IPR014925 Uncharacterised domain CGGC-dom Gferi_RS03275 c7d710a8b88ceff786abd8127d08cc10 141 SMART SM01078 5 119 1.2E-45 T 11-11-2016 IPR014925 Uncharacterised domain CGGC-dom Gferi_RS08440 87dbea16e96b9450a597c2a737bf7486 95 PIRSF PIRSF002736 1 95 3.7E-33 T 11-11-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 Gferi_RS08440 87dbea16e96b9450a597c2a737bf7486 95 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 85 1.7E-26 T 11-11-2016 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein Gferi_RS08440 87dbea16e96b9450a597c2a737bf7486 95 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 2 93 2.5E-32 T 11-11-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 Gferi_RS08440 87dbea16e96b9450a597c2a737bf7486 95 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 10 74 8.0E-14 T 11-11-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 Gferi_RS22660 1f7d9e31123acbefc47b8ef06b402d69 517 Pfam PF00754 F5/8 type C domain 57 152 4.3E-9 T 11-11-2016 IPR000421 Coagulation factor 5/8 C-terminal domain Gferi_RS22660 1f7d9e31123acbefc47b8ef06b402d69 517 Pfam PF16147 Domain of unknown function (DUF4855) 201 505 2.0E-88 T 11-11-2016 IPR032329 Protein of unknown function DUF4855 Gferi_RS22660 1f7d9e31123acbefc47b8ef06b402d69 517 SUPERFAMILY SSF49785 57 152 2.01E-7 T 11-11-2016 IPR008979 Galactose-binding domain-like Gferi_RS22660 1f7d9e31123acbefc47b8ef06b402d69 517 Gene3D G3DSA:2.60.120.260 68 152 8.1E-8 T 11-11-2016 IPR008979 Galactose-binding domain-like Gferi_RS18335 a6b92905e71c6738b2415f37617901ed 259 Pfam PF02441 Flavoprotein 25 135 4.9E-8 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS18335 a6b92905e71c6738b2415f37617901ed 259 SUPERFAMILY SSF52507 23 152 1.07E-10 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS18335 a6b92905e71c6738b2415f37617901ed 259 Gene3D G3DSA:3.40.50.1950 23 183 5.4E-14 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS21665 a69f82ce50c4cb9d557f7f1f1b60797a 81 SMART SM00530 16 76 0.0011 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS21665 a69f82ce50c4cb9d557f7f1f1b60797a 81 Gene3D G3DSA:1.10.260.40 10 78 2.4E-14 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS21665 a69f82ce50c4cb9d557f7f1f1b60797a 81 SUPERFAMILY SSF47413 10 80 2.82E-11 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS21665 a69f82ce50c4cb9d557f7f1f1b60797a 81 Pfam PF01381 Helix-turn-helix 17 76 3.1E-8 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 SUPERFAMILY SSF51735 17 251 5.41E-71 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 248 5.9E-55 T 11-11-2016 Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.8E-35 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.8E-35 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 3.8E-35 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.8E-35 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 3.8E-35 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.8E-35 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 Gene3D G3DSA:3.40.50.720 10 251 1.4E-71 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.5E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 8.5E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS22345 ec15d9c2ce3b3be6822e00fcbe7f3d59 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.5E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SMART SM01096 420 540 1.8E-57 T 11-11-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 4 1043 0.0 T 11-11-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1060 13.24 T 11-11-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SMART SM00851 949 1031 8.0E-10 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SUPERFAMILY SSF52440 1 127 3.02E-50 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SUPERFAMILY SSF52335 930 1047 6.02E-23 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 540 1.4E-40 T 11-11-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Gene3D G3DSA:3.40.50.20 4 108 7.2E-44 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SUPERFAMILY SSF56059 666 926 9.9E-94 T 11-11-2016 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 6.2E-76 T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 666 867 9.0E-38 T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 8.7E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 8.7E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 8.7E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 8.7E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 8.7E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 8.7E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 8.7E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 830 837 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Gene3D G3DSA:1.10.1030.10 398 531 5.8E-46 T 11-11-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Gene3D G3DSA:3.40.50.20 532 655 1.2E-56 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1052 12.728 T 11-11-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SUPERFAMILY SSF48108 395 546 1.12E-44 T 11-11-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SMART SM01209 671 837 0.0085 T 11-11-2016 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Gene3D G3DSA:3.30.470.20 738 924 1.3E-65 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Gene3D G3DSA:3.30.470.20 201 397 2.3E-72 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 702 716 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Gene3D G3DSA:3.40.50.1380 931 1046 2.1E-22 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SUPERFAMILY SSF56059 128 398 2.12E-104 T 11-11-2016 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 SUPERFAMILY SSF52440 550 668 1.04E-47 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Pfam PF02142 MGS-like domain 951 1031 2.1E-11 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Gene3D G3DSA:3.30.1490.20 142 200 5.1E-19 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS12800 da7b7d3541993c5c5f0d5d5d3b8b813d 1072 Gene3D G3DSA:3.30.1490.20 679 737 3.9E-24 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 Gene3D G3DSA:3.90.226.10 197 403 3.7E-69 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 SUPERFAMILY SSF50156 101 196 7.46E-18 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 Pfam PF13180 PDZ domain 113 193 8.1E-15 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 SUPERFAMILY SSF52096 59 132 8.95E-77 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 SUPERFAMILY SSF52096 206 392 8.95E-77 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 Pfam PF03572 Peptidase family S41 212 372 1.6E-54 T 11-11-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 65 386 2.7E-105 T 11-11-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 Gene3D G3DSA:3.30.750.44 70 117 3.5E-7 T 11-11-2016 Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 SMART SM00245 187 373 4.0E-61 T 11-11-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 SMART SM00228 113 185 8.9E-14 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS20630 0d2b82b94c6104d30d61635968504498 405 Gene3D G3DSA:2.30.42.10 118 196 9.9E-26 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS09050 51c903f922ea8f500654a8035274542d 298 SUPERFAMILY SSF101478 2 297 3.66E-74 T 11-11-2016 IPR005502 ADP-ribosylation/Crystallin J1 Gferi_RS09050 51c903f922ea8f500654a8035274542d 298 Pfam PF03747 ADP-ribosylglycohydrolase 9 276 4.5E-69 T 11-11-2016 IPR005502 ADP-ribosylation/Crystallin J1 Gferi_RS17675 eb64f0ab864cadf94d6f28b220e92162 235 Pfam PF00072 Response regulator receiver domain 4 111 2.0E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS17675 eb64f0ab864cadf94d6f28b220e92162 235 SMART SM00448 2 111 4.1E-38 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS17675 eb64f0ab864cadf94d6f28b220e92162 235 Gene3D G3DSA:3.40.50.2300 2 124 8.2E-37 T 11-11-2016 Gferi_RS17675 eb64f0ab864cadf94d6f28b220e92162 235 SUPERFAMILY SSF46894 133 226 3.68E-25 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS17675 eb64f0ab864cadf94d6f28b220e92162 235 SMART SM00862 152 226 3.5E-21 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS17675 eb64f0ab864cadf94d6f28b220e92162 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 4.5E-24 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS17675 eb64f0ab864cadf94d6f28b220e92162 235 Gene3D G3DSA:1.10.10.10 131 229 1.7E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17675 eb64f0ab864cadf94d6f28b220e92162 235 SUPERFAMILY SSF52172 2 126 4.84E-37 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 SUPERFAMILY SSF51905 4 191 2.18E-38 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 Gene3D G3DSA:3.50.50.60 104 303 1.0E-46 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 Gene3D G3DSA:3.30.390.30 351 380 1.1E-4 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 3.1E-20 T 11-11-2016 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.1E-20 T 11-11-2016 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 3.1E-20 T 11-11-2016 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 3.1E-20 T 11-11-2016 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 3.1E-20 T 11-11-2016 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 Gene3D G3DSA:3.50.50.60 3 103 1.5E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 SUPERFAMILY SSF51905 149 305 5.9E-29 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 294 7.6E-58 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 170 8.0E-12 T 11-11-2016 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 8.0E-12 T 11-11-2016 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 231 245 8.0E-12 T 11-11-2016 Gferi_RS05250 aea1eeaa0396c2270e95d1e9f2ff005d 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 8.0E-12 T 11-11-2016 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 Pfam PF01018 GTP1/OBG 2 157 2.5E-60 T 11-11-2016 IPR006169 GTP1/OBG domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 2.9E-35 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 226 244 2.9E-35 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 2.9E-35 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 209 224 2.9E-35 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 327 2.4E-139 T 11-11-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 Gene3D G3DSA:3.40.50.300 155 333 1.3E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 Pfam PF09269 Domain of unknown function (DUF1967) 359 423 1.1E-23 T 11-11-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 Pfam PF01926 50S ribosome-binding GTPase 160 282 1.0E-25 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 ProSitePatterns PS00905 GTP1/OBG family signature. 211 224 - T 11-11-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 Gene3D G3DSA:2.70.210.12 1 154 1.3E-56 T 11-11-2016 IPR006169 GTP1/OBG domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 357 424 1.6E-21 T 11-11-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 SUPERFAMILY SSF102741 356 425 5.75E-19 T 11-11-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 PIRSF PIRSF002401 1 373 2.2E-141 T 11-11-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 160 324 3.2E-13 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 SUPERFAMILY SSF82051 1 157 7.59E-55 T 11-11-2016 IPR006169 GTP1/OBG domain GO:0005525 Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 SUPERFAMILY SSF52540 160 333 2.91E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26370 0dad5b1832acc2376c764b3ab157a4b3 425 Hamap MF_01454 GTPase Obg [obg]. 1 329 48.056 T 11-11-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 ProDom PD010908 TRANSCRIPTION SPORULATION TWO-COMPONENT DNA-BINDING PHOSPHORYLATION SENSORY REGULATION TRANSDUCTION METAL-BINDING CALCIUM 158 266 5.0E-55 T 11-11-2016 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 TIGRFAM TIGR02875 spore_0_A: sporulation transcription factor Spo0A 3 267 1.5E-131 T 11-11-2016 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 SMART SM00448 4 119 1.4E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 PIRSF PIRSF002937 1 268 4.9E-137 T 11-11-2016 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 SUPERFAMILY SSF46894 151 265 2.72E-49 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 Pfam PF08769 Sporulation initiation factor Spo0A C terminal 158 261 8.3E-47 T 11-11-2016 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 SUPERFAMILY SSF52172 2 140 7.12E-34 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 Gene3D G3DSA:3.40.50.2300 3 130 1.3E-32 T 11-11-2016 Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 Gene3D G3DSA:1.10.10.10 151 266 2.2E-60 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00220 cc725433614ac7be4625e6ceae57175e 268 Pfam PF00072 Response regulator receiver domain 6 119 1.9E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 Gene3D G3DSA:2.160.10.10 98 232 1.6E-50 T 11-11-2016 Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 210 2.9E-12 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 Gene3D G3DSA:3.30.70.250 14 97 2.5E-30 T 11-11-2016 Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 SUPERFAMILY SSF51161 98 234 4.32E-52 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 140 168 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 101 129 1.0E-4 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 166 1.7E-9 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 Pfam PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal 15 97 1.7E-30 T 11-11-2016 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 Hamap MF_01691 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase [dapH]. 12 245 44.5 T 11-11-2016 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 TIGRFAM TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase 18 244 8.5E-112 T 11-11-2016 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 Gferi_RS04245 c463ec9e4af0cf2b8fa26dd7dc5e5e9b 245 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 184 212 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Gferi_RS18815 c5226f4a3d40e8c250f5ea9fb199194c 302 PIRSF PIRSF000428 1 301 8.9E-88 T 11-11-2016 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS18815 c5226f4a3d40e8c250f5ea9fb199194c 302 SUPERFAMILY SSF53659 1 299 2.88E-64 T 11-11-2016 Gferi_RS18815 c5226f4a3d40e8c250f5ea9fb199194c 302 Pfam PF01515 Phosphate acetyl/butaryl transferase 5 75 3.0E-9 T 11-11-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS18815 c5226f4a3d40e8c250f5ea9fb199194c 302 Pfam PF01515 Phosphate acetyl/butaryl transferase 76 294 2.6E-46 T 11-11-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS18815 c5226f4a3d40e8c250f5ea9fb199194c 302 Gene3D G3DSA:3.40.50.10750 112 270 1.6E-46 T 11-11-2016 Gferi_RS18815 c5226f4a3d40e8c250f5ea9fb199194c 302 TIGRFAM TIGR02706 P_butyryltrans: phosphate butyryltransferase 4 297 3.6E-127 T 11-11-2016 IPR014079 Phosphate butyryltransferase GO:0016740|GO:0019605|GO:0050182 KEGG: 00650+2.3.1.19 Gferi_RS07380 81de0498b6fbc297ca4140f1bda80f22 383 Gene3D G3DSA:3.90.1150.10 253 378 6.8E-29 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS07380 81de0498b6fbc297ca4140f1bda80f22 383 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 3 374 9.1E-136 T 11-11-2016 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 Gferi_RS07380 81de0498b6fbc297ca4140f1bda80f22 383 SUPERFAMILY SSF53383 2 378 2.51E-93 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS07380 81de0498b6fbc297ca4140f1bda80f22 383 PIRSF PIRSF000390 1 381 2.6E-90 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Gferi_RS07380 81de0498b6fbc297ca4140f1bda80f22 383 Gene3D G3DSA:3.40.640.10 3 250 7.3E-67 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS07380 81de0498b6fbc297ca4140f1bda80f22 383 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 372 3.1E-85 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Gferi_RS09510 a75521ae3d3a227de4062ce2fed7ebcd 327 Pfam PF00005 ABC transporter 37 187 7.0E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS09510 a75521ae3d3a227de4062ce2fed7ebcd 327 Gene3D G3DSA:3.40.50.300 9 261 2.8E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09510 a75521ae3d3a227de4062ce2fed7ebcd 327 SUPERFAMILY SSF52540 9 259 5.45E-76 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09510 a75521ae3d3a227de4062ce2fed7ebcd 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 306 7.2E-17 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS09510 a75521ae3d3a227de4062ce2fed7ebcd 327 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09510 a75521ae3d3a227de4062ce2fed7ebcd 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 326 2.3E-28 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS09510 a75521ae3d3a227de4062ce2fed7ebcd 327 SMART SM00382 45 237 4.4E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 SMART SM00662 20 227 7.7E-103 T 11-11-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 Gene3D G3DSA:1.10.150.20 246 311 8.4E-33 T 11-11-2016 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 253 310 3.0E-22 T 11-11-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 57 152 5.7E-24 T 11-11-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 Gene3D G3DSA:3.30.1360.10 4 63 1.4E-12 T 11-11-2016 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 SUPERFAMILY SSF55257 4 50 8.04E-32 T 11-11-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 SUPERFAMILY SSF55257 172 224 8.04E-32 T 11-11-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 221 3.3E-25 T 11-11-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 SUPERFAMILY SSF47789 247 311 1.83E-24 T 11-11-2016 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 313 37.978 T 11-11-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 20 311 2.0E-125 T 11-11-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 240 305 3.4E-28 T 11-11-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 Gene3D G3DSA:2.170.120.12 64 170 1.4E-46 T 11-11-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS17540 69ee3eff6ff56268cea6ed8abadfed2b 315 SUPERFAMILY SSF56553 50 171 4.58E-45 T 11-11-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS13885 fbc9621b82cb306bb847ebda0db068ba 174 Pfam PF13683 Integrase core domain 47 113 1.4E-15 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 Gferi_RS13885 fbc9621b82cb306bb847ebda0db068ba 174 SUPERFAMILY SSF53098 24 125 2.43E-23 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS13885 fbc9621b82cb306bb847ebda0db068ba 174 Gene3D G3DSA:3.30.420.10 25 113 6.0E-15 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 SMART SM00267 146 318 1.6E-54 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 SMART SM00052 328 574 1.6E-125 T 11-11-2016 IPR001633 EAL domain Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 156 315 4.3E-31 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 Pfam PF00563 EAL domain 335 569 2.6E-76 T 11-11-2016 IPR001633 EAL domain Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 Gene3D G3DSA:3.30.70.270 158 323 6.7E-48 T 11-11-2016 Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 SUPERFAMILY SSF141868 333 581 4.05E-95 T 11-11-2016 IPR001633 EAL domain Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 Gene3D G3DSA:3.20.20.450 331 581 5.2E-106 T 11-11-2016 IPR001633 EAL domain Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 SUPERFAMILY SSF55073 162 320 6.28E-44 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS15510 15795f10b64ba3298589941cea6dec0b 586 Pfam PF00990 Diguanylate cyclase, GGDEF domain 158 313 6.8E-43 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS02800 873c8243536782cd376ce524546e59ef 194 SUPERFAMILY SSF55729 5 156 5.57E-16 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02800 873c8243536782cd376ce524546e59ef 194 Gene3D G3DSA:3.40.630.30 4 155 2.6E-18 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02800 873c8243536782cd376ce524546e59ef 194 Pfam PF13508 Acetyltransferase (GNAT) domain 62 136 4.7E-8 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS19695 b2b4336ea89d7b0555061ae8d4984ac8 263 SUPERFAMILY SSF52540 1 246 1.03E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19695 b2b4336ea89d7b0555061ae8d4984ac8 263 Pfam PF13614 AAA domain 2 178 3.7E-30 T 11-11-2016 IPR025669 AAA domain Gferi_RS19695 b2b4336ea89d7b0555061ae8d4984ac8 263 Gene3D G3DSA:3.40.50.300 1 256 3.7E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17750 365aa1d910c9be3b024419ba646b572f 392 Pfam PF07690 Major Facilitator Superfamily 10 342 3.1E-31 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS17750 365aa1d910c9be3b024419ba646b572f 392 Gene3D G3DSA:1.20.1250.20 199 378 2.1E-10 T 11-11-2016 Gferi_RS17750 365aa1d910c9be3b024419ba646b572f 392 SUPERFAMILY SSF103473 6 381 8.89E-45 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS17750 365aa1d910c9be3b024419ba646b572f 392 Gene3D G3DSA:1.20.1250.20 4 185 2.0E-23 T 11-11-2016 Gferi_RS17525 bec5d3e59c592ceebe764453d85bd41a 123 Gene3D G3DSA:4.10.910.10 74 122 5.6E-27 T 11-11-2016 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17525 bec5d3e59c592ceebe764453d85bd41a 123 Gene3D G3DSA:1.10.8.50 1 72 3.7E-32 T 11-11-2016 Gferi_RS17525 bec5d3e59c592ceebe764453d85bd41a 123 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 29.974 T 11-11-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17525 bec5d3e59c592ceebe764453d85bd41a 123 SUPERFAMILY SSF46946 2 121 6.02E-47 T 11-11-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Gferi_RS17525 bec5d3e59c592ceebe764453d85bd41a 123 Pfam PF00416 Ribosomal protein S13/S18 3 109 2.2E-34 T 11-11-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17525 bec5d3e59c592ceebe764453d85bd41a 123 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 11-11-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17525 bec5d3e59c592ceebe764453d85bd41a 123 PIRSF PIRSF002134 1 123 1.2E-45 T 11-11-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17525 bec5d3e59c592ceebe764453d85bd41a 123 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 1.2E-54 T 11-11-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17270 a5c7eb5c9719c51a4a0b84c0a664c5b3 147 Gene3D G3DSA:1.10.1520.10 15 144 7.5E-47 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS17270 a5c7eb5c9719c51a4a0b84c0a664c5b3 147 Hamap MF_01468 Mini-ribonuclease 3 [mrnC]. 16 140 29.969 T 11-11-2016 IPR008226 Mini-ribonuclease 3 family Gferi_RS17270 a5c7eb5c9719c51a4a0b84c0a664c5b3 147 PIRSF PIRSF005520 10 146 2.7E-49 T 11-11-2016 IPR008226 Mini-ribonuclease 3 family Gferi_RS17270 a5c7eb5c9719c51a4a0b84c0a664c5b3 147 SUPERFAMILY SSF69065 19 139 2.27E-37 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS17270 a5c7eb5c9719c51a4a0b84c0a664c5b3 147 Pfam PF00636 Ribonuclease III domain 26 123 1.6E-16 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS17270 a5c7eb5c9719c51a4a0b84c0a664c5b3 147 SMART SM00535 8 141 8.4E-5 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Gferi_RS04730 812966ddf76df2e3f9992ce2811a504a 473 Pfam PF00239 Resolvase, N terminal domain 4 151 4.8E-40 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS04730 812966ddf76df2e3f9992ce2811a504a 473 Pfam PF13408 Recombinase zinc beta ribbon domain 269 331 1.5E-9 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS04730 812966ddf76df2e3f9992ce2811a504a 473 Gene3D G3DSA:3.40.50.1390 3 134 8.4E-34 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS04730 812966ddf76df2e3f9992ce2811a504a 473 SMART SM00857 4 151 8.0E-55 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS04730 812966ddf76df2e3f9992ce2811a504a 473 ProSitePatterns PS00397 Site-specific recombinases active site. 7 15 - T 11-11-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Gferi_RS04730 812966ddf76df2e3f9992ce2811a504a 473 Pfam PF07508 Recombinase 173 258 3.3E-20 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS04730 812966ddf76df2e3f9992ce2811a504a 473 SUPERFAMILY SSF53041 2 151 1.31E-36 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS02785 032444619ff1b76cab34647c1d2031c2 121 Pfam PF12788 YmaF family 22 116 1.5E-30 T 11-11-2016 IPR024307 YmaF Gferi_RS12360 bfe643ebc45d46a3739b04cf04c8c966 235 Gene3D G3DSA:3.30.240.20 81 155 4.2E-26 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS12360 bfe643ebc45d46a3739b04cf04c8c966 235 Pfam PF04239 Protein of unknown function (DUF421) 91 205 4.6E-31 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS12360 bfe643ebc45d46a3739b04cf04c8c966 235 Gene3D G3DSA:3.30.240.20 171 228 3.5E-18 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 Pfam PF11734 TilS substrate C-terminal domain 387 454 4.9E-14 T 11-11-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 Gene3D G3DSA:3.40.50.620 3 183 2.0E-21 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 386 430 7.8E-17 T 11-11-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 205 1.2E-56 T 11-11-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 Gene3D G3DSA:3.50.40.10 373 461 1.4E-5 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 SUPERFAMILY SSF56037 375 456 3.79E-20 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 SUPERFAMILY SSF52402 7 233 1.7E-58 T 11-11-2016 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 SMART SM00977 385 457 2.0E-24 T 11-11-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 Pfam PF01171 PP-loop family 21 200 9.2E-54 T 11-11-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 2 315 24.59 T 11-11-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 Pfam PF09179 TilS substrate binding domain 255 321 8.0E-5 T 11-11-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Gferi_RS16840 8f2944a5179e66e3b21ba4b96a510f73 464 SUPERFAMILY SSF82829 213 321 6.54E-17 T 11-11-2016 Gferi_RS08055 034481d21241883e42e54eefc9ccca4c 133 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 89 106 - T 11-11-2016 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS08055 034481d21241883e42e54eefc9ccca4c 133 Gene3D G3DSA:2.40.50.100 58 132 3.0E-27 T 11-11-2016 Gferi_RS08055 034481d21241883e42e54eefc9ccca4c 133 Pfam PF00364 Biotin-requiring enzyme 66 132 1.5E-20 T 11-11-2016 IPR000089 Biotin/lipoyl attachment Gferi_RS08055 034481d21241883e42e54eefc9ccca4c 133 SUPERFAMILY SSF51230 53 132 4.32E-25 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS16905 034481d21241883e42e54eefc9ccca4c 133 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 89 106 - T 11-11-2016 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS16905 034481d21241883e42e54eefc9ccca4c 133 Gene3D G3DSA:2.40.50.100 58 132 3.0E-27 T 11-11-2016 Gferi_RS16905 034481d21241883e42e54eefc9ccca4c 133 Pfam PF00364 Biotin-requiring enzyme 66 132 1.5E-20 T 11-11-2016 IPR000089 Biotin/lipoyl attachment Gferi_RS16905 034481d21241883e42e54eefc9ccca4c 133 SUPERFAMILY SSF51230 53 132 4.32E-25 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 Gene3D G3DSA:1.10.1040.10 198 284 1.5E-34 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 SMART SM00984 300 387 5.3E-15 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 169 3.2E-35 T 11-11-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 Gene3D G3DSA:3.40.50.720 1 197 8.6E-71 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 SUPERFAMILY SSF48179 191 287 6.29E-30 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 SUPERFAMILY SSF52413 283 388 3.14E-28 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 SUPERFAMILY SSF51735 1 194 7.49E-53 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 PIRSF PIRSF500134 1 348 8.7E-123 T 11-11-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 378 2.9E-105 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 PIRSF PIRSF000124 1 389 3.4E-138 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 Gene3D G3DSA:3.40.50.720 285 388 4.9E-48 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 1.5E-25 T 11-11-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS11305 17828f9c3ede55db276ddd14d76ad147 389 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 301 376 3.1E-10 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Gferi_RS25225 e4c86920d849f3a1bc7f217ab5fc4f3c 348 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 4 346 39.159 T 11-11-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Gferi_RS25225 e4c86920d849f3a1bc7f217ab5fc4f3c 348 Pfam PF01008 Initiation factor 2 subunit family 47 334 3.9E-85 T 11-11-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 Gferi_RS25225 e4c86920d849f3a1bc7f217ab5fc4f3c 348 Gene3D G3DSA:3.40.50.10470 157 339 1.1E-72 T 11-11-2016 Gferi_RS25225 e4c86920d849f3a1bc7f217ab5fc4f3c 348 Gene3D G3DSA:1.20.120.420 5 156 5.8E-51 T 11-11-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Gferi_RS25225 e4c86920d849f3a1bc7f217ab5fc4f3c 348 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 7 334 1.8E-137 T 11-11-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Gferi_RS25225 e4c86920d849f3a1bc7f217ab5fc4f3c 348 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 33 335 2.1E-118 T 11-11-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Gferi_RS25225 e4c86920d849f3a1bc7f217ab5fc4f3c 348 SUPERFAMILY SSF100950 3 343 1.47E-123 T 11-11-2016 Gferi_RS05635 d34836f1a78069cd15e5a33f5f4a9c79 269 Gene3D G3DSA:3.40.50.10330 37 130 2.8E-19 T 11-11-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS05635 d34836f1a78069cd15e5a33f5f4a9c79 269 SUPERFAMILY SSF111331 24 268 1.7E-62 T 11-11-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain Gferi_RS05635 d34836f1a78069cd15e5a33f5f4a9c79 269 Pfam PF01513 ATP-NAD kinase 38 233 1.5E-35 T 11-11-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS05635 d34836f1a78069cd15e5a33f5f4a9c79 269 Hamap MF_00361 NAD kinase [nadK]. 6 269 24.751 T 11-11-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS05635 d34836f1a78069cd15e5a33f5f4a9c79 269 Gene3D G3DSA:2.60.200.30 131 236 4.7E-30 T 11-11-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 PRINTS PR00985 Leucyl-tRNA synthetase signature 214 233 7.1E-46 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 PRINTS PR00985 Leucyl-tRNA synthetase signature 561 571 7.1E-46 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 PRINTS PR00985 Leucyl-tRNA synthetase signature 489 507 7.1E-46 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 PRINTS PR00985 Leucyl-tRNA synthetase signature 528 550 7.1E-46 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 7.1E-46 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 7.1E-46 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 7.1E-46 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 416 606 1.7E-18 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Gene3D G3DSA:3.90.740.10 223 423 1.4E-55 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 SUPERFAMILY SSF52374 4 225 6.28E-144 T 11-11-2016 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 SUPERFAMILY SSF52374 415 629 6.28E-144 T 11-11-2016 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Gene3D G3DSA:1.10.730.10 609 736 6.3E-33 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 4 802 0.0 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Pfam PF09334 tRNA synthetases class I (M) 40 185 1.4E-20 T 11-11-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Gene3D G3DSA:3.40.50.620 3 222 1.7E-154 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Gene3D G3DSA:3.40.50.620 424 608 1.7E-154 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 SUPERFAMILY SSF47323 622 801 9.72E-34 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 53 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Pfam PF08264 Anticodon-binding domain of tRNA 653 761 1.0E-18 T 11-11-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 3 801 21.836 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 SUPERFAMILY SSF50677 225 414 2.2E-49 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Gferi_RS17035 d7d76c50f5a4f9bba032ba26df525e05 802 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 220 403 1.1E-66 T 11-11-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 Gferi_RS18760 2df69e499c80413f81ff41d3cc7f8212 377 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 11 27 - T 11-11-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS18760 2df69e499c80413f81ff41d3cc7f8212 377 Pfam PF00682 HMGL-like 4 261 1.0E-81 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 Gferi_RS18760 2df69e499c80413f81ff41d3cc7f8212 377 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 5 357 9.3E-144 T 11-11-2016 IPR013477 Homocitrate synthase NifV-type GO:0004410|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 Gferi_RS18760 2df69e499c80413f81ff41d3cc7f8212 377 Gene3D G3DSA:3.20.20.70 3 334 5.5E-107 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS18760 2df69e499c80413f81ff41d3cc7f8212 377 SUPERFAMILY SSF51569 2 278 3.11E-79 T 11-11-2016 Gferi_RS18760 2df69e499c80413f81ff41d3cc7f8212 377 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 190 203 - T 11-11-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Gferi_RS20775 a4b49bc3c7890206bbbcf30b05c7ebbf 121 SUPERFAMILY SSF52833 28 118 6.46E-16 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20775 a4b49bc3c7890206bbbcf30b05c7ebbf 121 Gene3D G3DSA:3.40.30.10 28 119 3.1E-20 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS23870 f7764aa3a4115c356fb553a59e1bae5e 360 Pfam PF03845 Spore germination protein 5 312 3.6E-50 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS23870 f7764aa3a4115c356fb553a59e1bae5e 360 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 4 355 6.8E-59 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS00930 d52a575dcb58e78f1538d1061d1d8f9d 262 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 184 201 - T 11-11-2016 IPR000540 Flagellar motor protein MotA, conserved site Gferi_RS00930 d52a575dcb58e78f1538d1061d1d8f9d 262 Pfam PF01618 MotA/TolQ/ExbB proton channel family 100 214 3.5E-26 T 11-11-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Gferi_RS02330 16c5aec86fae5f2790108b110c1890e4 252 SUPERFAMILY SSF88697 1 71 4.72E-11 T 11-11-2016 IPR015947 PUA-like domain Gferi_RS02330 16c5aec86fae5f2790108b110c1890e4 252 SUPERFAMILY SSF75217 75 249 1.92E-51 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases Gferi_RS02330 16c5aec86fae5f2790108b110c1890e4 252 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 15 249 3.7E-64 T 11-11-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS02330 16c5aec86fae5f2790108b110c1890e4 252 Pfam PF04452 RNA methyltransferase 20 244 1.6E-70 T 11-11-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS02330 16c5aec86fae5f2790108b110c1890e4 252 Gene3D G3DSA:3.40.1280.10 1 250 4.1E-76 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Gferi_RS02330 16c5aec86fae5f2790108b110c1890e4 252 PIRSF PIRSF015601 1 249 1.7E-65 T 11-11-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 SUPERFAMILY SSF140356 9 113 5.49E-40 T 11-11-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 Pfam PF13090 Polyphosphate kinase C-terminal domain 335 681 2.2E-158 T 11-11-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 11 681 1.1E-281 T 11-11-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 Pfam PF13089 Polyphosphate kinase N-terminal domain 12 118 9.7E-42 T 11-11-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 Gene3D G3DSA:3.30.870.10 505 687 3.3E-72 T 11-11-2016 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 Gene3D G3DSA:3.30.870.10 322 501 1.0E-78 T 11-11-2016 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 Pfam PF02503 Polyphosphate kinase middle domain 126 326 7.1E-73 T 11-11-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 Gene3D G3DSA:3.30.1840.10 114 305 1.2E-68 T 11-11-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 PIRSF PIRSF015589 1 699 1.9E-288 T 11-11-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 SUPERFAMILY SSF143724 115 318 1.2E-62 T 11-11-2016 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 SUPERFAMILY SSF56024 324 500 3.85E-59 T 11-11-2016 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 SUPERFAMILY SSF56024 506 687 3.81E-69 T 11-11-2016 Gferi_RS16615 cb21d40c6cf8cc0da4ad53f78127a26a 721 Hamap MF_00347 Polyphosphate kinase [ppk]. 9 685 34.807 T 11-11-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 Gferi_RS27110 7a1f0993585338d8787f80905250eb8d 138 SUPERFAMILY SSF47188 1 132 4.06E-30 T 11-11-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Gferi_RS27110 7a1f0993585338d8787f80905250eb8d 138 ProSitePatterns PS00550 Hemerythrin family signature. 60 83 - T 11-11-2016 IPR016131 Haemerythrin, iron-binding site GO:0046872 Gferi_RS27110 7a1f0993585338d8787f80905250eb8d 138 Pfam PF01814 Hemerythrin HHE cation binding domain 13 128 7.9E-10 T 11-11-2016 IPR012312 Haemerythrin-like Reactome: R-HSA-390471 Gferi_RS27110 7a1f0993585338d8787f80905250eb8d 138 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 4 132 1.8E-33 T 11-11-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Gferi_RS27110 7a1f0993585338d8787f80905250eb8d 138 Gene3D G3DSA:1.20.120.50 1 132 2.7E-33 T 11-11-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 Gferi_RS25570 bec4c4c76c00fd5d0b6d43e761fd3153 239 Gene3D G3DSA:3.30.1270.10 211 238 4.4E-37 T 11-11-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Gferi_RS25570 bec4c4c76c00fd5d0b6d43e761fd3153 239 Gene3D G3DSA:3.30.1270.10 79 133 4.4E-37 T 11-11-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Gferi_RS25570 bec4c4c76c00fd5d0b6d43e761fd3153 239 Pfam PF01709 Transcriptional regulator 6 236 6.5E-91 T 11-11-2016 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Gferi_RS25570 bec4c4c76c00fd5d0b6d43e761fd3153 239 Gene3D G3DSA:1.10.10.200 6 77 6.8E-25 T 11-11-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like Gferi_RS25570 bec4c4c76c00fd5d0b6d43e761fd3153 239 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 2 238 32.959 T 11-11-2016 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Gferi_RS25570 bec4c4c76c00fd5d0b6d43e761fd3153 239 Gene3D G3DSA:3.30.70.980 134 203 5.6E-31 T 11-11-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Gferi_RS25570 bec4c4c76c00fd5d0b6d43e761fd3153 239 SUPERFAMILY SSF75625 4 238 6.02E-90 T 11-11-2016 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Gferi_RS25570 bec4c4c76c00fd5d0b6d43e761fd3153 239 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 4 237 1.2E-90 T 11-11-2016 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Gferi_RS22630 5701bb0863f471110a8a131a0fe37375 144 Gene3D G3DSA:3.40.930.10 2 143 2.8E-50 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS22630 5701bb0863f471110a8a131a0fe37375 144 SUPERFAMILY SSF55804 2 142 9.68E-35 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS22630 5701bb0863f471110a8a131a0fe37375 144 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 143 1.3E-32 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS11345 58638b8259ef2987d896024cfa0aef25 407 Pfam PF00534 Glycosyl transferases group 1 210 382 3.3E-13 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS11345 58638b8259ef2987d896024cfa0aef25 407 Gene3D G3DSA:3.40.50.2000 189 302 3.0E-8 T 11-11-2016 Gferi_RS11345 58638b8259ef2987d896024cfa0aef25 407 SUPERFAMILY SSF53756 22 401 3.09E-32 T 11-11-2016 Gferi_RS13245 f1ab8ca18065c779756b6bda0de02350 371 SUPERFAMILY SSF52540 2 358 8.67E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13245 f1ab8ca18065c779756b6bda0de02350 371 Gene3D G3DSA:3.40.50.300 2 171 7.0E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13245 f1ab8ca18065c779756b6bda0de02350 371 Gene3D G3DSA:3.40.50.300 242 354 7.0E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13245 f1ab8ca18065c779756b6bda0de02350 371 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 371 95.541 T 11-11-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Gferi_RS13245 f1ab8ca18065c779756b6bda0de02350 371 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 362 2.5E-113 T 11-11-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Gferi_RS13245 f1ab8ca18065c779756b6bda0de02350 371 ProSitePatterns PS00618 RecF protein signature 2. 310 328 - T 11-11-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 Gferi_RS13245 f1ab8ca18065c779756b6bda0de02350 371 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 11-11-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 Gferi_RS13245 f1ab8ca18065c779756b6bda0de02350 371 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 351 8.5E-19 T 11-11-2016 IPR003395 RecF/RecN/SMC, N-terminal Gferi_RS15525 583e76ad660c5499b7af10b79bdfebb0 461 SUPERFAMILY SSF55604 384 455 4.71E-20 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS15525 583e76ad660c5499b7af10b79bdfebb0 461 Pfam PF02378 Phosphotransferase system, EIIC 13 302 2.7E-71 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS15525 583e76ad660c5499b7af10b79bdfebb0 461 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 396 413 - T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Gferi_RS15525 583e76ad660c5499b7af10b79bdfebb0 461 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 9 453 1.3E-169 T 11-11-2016 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 Gferi_RS15525 583e76ad660c5499b7af10b79bdfebb0 461 Pfam PF00367 phosphotransferase system, EIIB 388 416 2.6E-12 T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 Gferi_RS15525 583e76ad660c5499b7af10b79bdfebb0 461 Gene3D G3DSA:3.30.1360.60 380 457 3.2E-25 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS15525 583e76ad660c5499b7af10b79bdfebb0 461 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 360 442 6.7E-15 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 Gferi_RS15380 05a7cd01cd86090235b326120a92f651 577 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15380 05a7cd01cd86090235b326120a92f651 577 Gene3D G3DSA:1.20.1560.10 3 315 1.9E-74 T 11-11-2016 Gferi_RS15380 05a7cd01cd86090235b326120a92f651 577 SUPERFAMILY SSF52540 322 569 9.16E-95 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15380 05a7cd01cd86090235b326120a92f651 577 Pfam PF00664 ABC transporter transmembrane region 17 286 9.7E-52 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS15380 05a7cd01cd86090235b326120a92f651 577 SMART SM00382 358 544 3.4E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15380 05a7cd01cd86090235b326120a92f651 577 Gene3D G3DSA:3.40.50.300 333 562 1.2E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15380 05a7cd01cd86090235b326120a92f651 577 SUPERFAMILY SSF90123 3 319 2.22E-79 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS15380 05a7cd01cd86090235b326120a92f651 577 Pfam PF00005 ABC transporter 349 498 1.6E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06195 f31f0c44b20118c1f29087d28911d83f 575 Pfam PF00403 Heavy-metal-associated domain 7 67 9.0E-12 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS06195 f31f0c44b20118c1f29087d28911d83f 575 SUPERFAMILY SSF55008 3 70 4.19E-17 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS06195 f31f0c44b20118c1f29087d28911d83f 575 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 114 308 9.8E-48 T 11-11-2016 Gferi_RS06195 f31f0c44b20118c1f29087d28911d83f 575 Gene3D G3DSA:3.30.70.100 3 68 2.1E-17 T 11-11-2016 Gferi_RS06195 f31f0c44b20118c1f29087d28911d83f 575 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 11-11-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Gferi_RS26150 cbd5d52b4f50e1837e86602ef0f84eb9 539 Gene3D G3DSA:3.10.105.10 286 503 9.5E-55 T 11-11-2016 Gferi_RS26150 cbd5d52b4f50e1837e86602ef0f84eb9 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 87 456 2.2E-80 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS26150 cbd5d52b4f50e1837e86602ef0f84eb9 539 PIRSF PIRSF002741 2 538 5.3E-122 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS26150 cbd5d52b4f50e1837e86602ef0f84eb9 539 Gene3D G3DSA:3.90.76.10 54 207 8.1E-36 T 11-11-2016 Gferi_RS26150 cbd5d52b4f50e1837e86602ef0f84eb9 539 SUPERFAMILY SSF53850 52 533 4.96E-119 T 11-11-2016 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 SUPERFAMILY SSF51735 3 170 1.28E-69 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 Gene3D G3DSA:3.40.50.720 3 162 4.9E-82 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 - T 11-11-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 PIRSF PIRSF000149 1 336 7.0E-144 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 271 286 2.4E-42 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 2.4E-42 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 2.4E-42 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 2.4E-42 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 2.4E-42 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 327 1.8E-142 T 11-11-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 154 8.8E-66 T 11-11-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 Gene3D G3DSA:3.30.360.10 163 317 3.6E-77 T 11-11-2016 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 315 1.2E-70 T 11-11-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 SMART SM00846 3 154 8.2E-104 T 11-11-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24460 f9ce8a8e2a8381880d0d77600e6e9b47 337 SUPERFAMILY SSF55347 154 316 8.93E-74 T 11-11-2016 Gferi_RS01885 42186fef0cdc41be27f9259b98b2df79 230 Gene3D G3DSA:1.10.10.10 130 229 4.2E-39 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01885 42186fef0cdc41be27f9259b98b2df79 230 Pfam PF00072 Response regulator receiver domain 6 118 3.8E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS01885 42186fef0cdc41be27f9259b98b2df79 230 SMART SM00448 4 117 1.4E-49 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS01885 42186fef0cdc41be27f9259b98b2df79 230 SUPERFAMILY SSF52172 2 128 1.85E-45 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS01885 42186fef0cdc41be27f9259b98b2df79 230 SUPERFAMILY SSF46894 130 229 4.32E-34 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS01885 42186fef0cdc41be27f9259b98b2df79 230 Gene3D G3DSA:3.40.50.2300 3 127 3.0E-46 T 11-11-2016 Gferi_RS01885 42186fef0cdc41be27f9259b98b2df79 230 SMART SM00862 153 229 3.6E-30 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS01885 42186fef0cdc41be27f9259b98b2df79 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 3.4E-30 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS24795 fad39f63ed98a21f91edd0580944a3a9 520 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 440 3.6E-68 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS24795 fad39f63ed98a21f91edd0580944a3a9 520 Gene3D G3DSA:3.10.105.10 280 488 2.1E-52 T 11-11-2016 Gferi_RS24795 fad39f63ed98a21f91edd0580944a3a9 520 PIRSF PIRSF002741 1 514 9.9E-70 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS24795 fad39f63ed98a21f91edd0580944a3a9 520 Gene3D G3DSA:3.90.76.10 71 133 6.6E-12 T 11-11-2016 Gferi_RS24795 fad39f63ed98a21f91edd0580944a3a9 520 Gene3D G3DSA:3.40.190.10 148 279 1.6E-30 T 11-11-2016 Gferi_RS24795 fad39f63ed98a21f91edd0580944a3a9 520 SUPERFAMILY SSF53850 32 511 2.53E-101 T 11-11-2016 Gferi_RS00125 b87aa232f128c6b7953bbaf88d0f7a21 134 SUPERFAMILY SSF101386 10 89 2.62E-7 T 11-11-2016 Gferi_RS00125 b87aa232f128c6b7953bbaf88d0f7a21 134 Gene3D G3DSA:1.10.287.1080 1 77 3.3E-6 T 11-11-2016 Gferi_RS00125 b87aa232f128c6b7953bbaf88d0f7a21 134 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 24 87 2.9E-5 T 11-11-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Gferi_RS20080 23bdd26ebd81136139534fda24e108f5 574 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS20080 23bdd26ebd81136139534fda24e108f5 574 SMART SM00382 363 555 6.0E-16 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20080 23bdd26ebd81136139534fda24e108f5 574 Pfam PF00664 ABC transporter transmembrane region 22 281 4.5E-20 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS20080 23bdd26ebd81136139534fda24e108f5 574 SUPERFAMILY SSF52540 335 573 6.03E-92 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20080 23bdd26ebd81136139534fda24e108f5 574 Pfam PF00005 ABC transporter 354 503 1.4E-36 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS20080 23bdd26ebd81136139534fda24e108f5 574 Gene3D G3DSA:1.20.1560.10 6 321 9.1E-37 T 11-11-2016 Gferi_RS20080 23bdd26ebd81136139534fda24e108f5 574 SUPERFAMILY SSF90123 6 321 1.44E-45 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS20080 23bdd26ebd81136139534fda24e108f5 574 Gene3D G3DSA:3.40.50.300 337 567 3.4E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05265 dd797b643cba8cfcbe05bd9e3763a272 233 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 11 231 1.1E-71 T 11-11-2016 IPR019903 Repair of iron centres family Gferi_RS05265 dd797b643cba8cfcbe05bd9e3763a272 233 Pfam PF01814 Hemerythrin HHE cation binding domain 87 231 3.6E-21 T 11-11-2016 IPR012312 Haemerythrin-like Reactome: R-HSA-390471 Gferi_RS05265 dd797b643cba8cfcbe05bd9e3763a272 233 Pfam PF04405 Domain of Unknown function (DUF542) 8 61 4.4E-19 T 11-11-2016 IPR019903 Repair of iron centres family Gferi_RS05265 dd797b643cba8cfcbe05bd9e3763a272 233 Gene3D G3DSA:1.20.120.520 72 232 2.0E-25 T 11-11-2016 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 Gene3D G3DSA:3.30.565.10 411 578 1.3E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 SUPERFAMILY SSF158472 190 241 6.02E-8 T 11-11-2016 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 SMART SM00388 357 424 1.8E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 558 8.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 521 8.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 564 577 8.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 525 535 8.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 Gene3D G3DSA:3.30.450.20 323 354 1.2E-6 T 11-11-2016 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 Pfam PF13188 PAS domain 250 298 3.1E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 SMART SM00304 190 242 1.3E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 Pfam PF00512 His Kinase A (phospho-acceptor) domain 358 423 3.3E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 SUPERFAMILY SSF55785 240 349 4.54E-10 T 11-11-2016 IPR000014 PAS domain Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 Gene3D G3DSA:1.10.287.130 355 410 1.9E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 Pfam PF00672 HAMP domain 171 238 1.4E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 SMART SM00387 470 580 4.2E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 Gene3D G3DSA:3.30.450.20 243 288 4.7E-6 T 11-11-2016 Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 SUPERFAMILY SSF55874 413 578 5.37E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 475 577 2.8E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07145 29f6af7810a5e7cbbe07e02923c92625 587 SUPERFAMILY SSF47384 343 424 2.75E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 SUPERFAMILY SSF55804 839 974 1.57E-28 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 SMART SM00382 143 295 4.3E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 SUPERFAMILY SSF52540 109 358 8.79E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 Gene3D G3DSA:3.40.50.510 590 711 1.4E-38 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 Pfam PF00874 PRD domain 489 580 2.2E-16 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 SUPERFAMILY SSF53062 593 700 1.83E-18 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 SUPERFAMILY SSF63520 487 584 8.37E-18 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 841 974 1.4E-25 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 Gene3D G3DSA:1.10.1790.10 487 582 8.3E-18 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 Pfam PF03610 PTS system fructose IIA component 595 697 3.8E-14 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 Gene3D G3DSA:3.40.50.300 117 295 2.5E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 Gene3D G3DSA:3.40.930.10 836 974 1.3E-31 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 216 231 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS25605 39adb3a857564bcaa3c740b916b0413c 977 Pfam PF00158 Sigma-54 interaction domain 120 285 4.5E-45 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS02910 09da2868db32517a341439dab6c90571 494 SUPERFAMILY SSF51735 6 274 3.46E-69 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02910 09da2868db32517a341439dab6c90571 494 Gene3D G3DSA:1.10.1040.10 279 493 8.9E-62 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS02910 09da2868db32517a341439dab6c90571 494 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 25 179 2.0E-25 T 11-11-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 Gferi_RS02910 09da2868db32517a341439dab6c90571 494 Gene3D G3DSA:3.40.50.720 10 274 2.7E-71 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02910 09da2868db32517a341439dab6c90571 494 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 213 412 5.3E-52 T 11-11-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 Gferi_RS02910 09da2868db32517a341439dab6c90571 494 PRINTS PR00084 Mannitol dehydrogenase signature 171 184 4.4E-5 T 11-11-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Gferi_RS02910 09da2868db32517a341439dab6c90571 494 PRINTS PR00084 Mannitol dehydrogenase signature 26 36 4.4E-5 T 11-11-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Gferi_RS02910 09da2868db32517a341439dab6c90571 494 PRINTS PR00084 Mannitol dehydrogenase signature 212 225 4.4E-5 T 11-11-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Gferi_RS02910 09da2868db32517a341439dab6c90571 494 PRINTS PR00084 Mannitol dehydrogenase signature 242 257 4.4E-5 T 11-11-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 Gferi_RS02910 09da2868db32517a341439dab6c90571 494 SUPERFAMILY SSF48179 282 493 9.86E-43 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS04605 fa2d23681a4a5a6a68bd694bff39c34f 480 Gene3D G3DSA:3.30.465.10 108 224 6.4E-28 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Gferi_RS04605 fa2d23681a4a5a6a68bd694bff39c34f 480 Pfam PF01565 FAD binding domain 51 190 1.2E-33 T 11-11-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Gferi_RS04605 fa2d23681a4a5a6a68bd694bff39c34f 480 Gene3D G3DSA:1.10.45.10 456 474 3.2E-5 T 11-11-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Gferi_RS04605 fa2d23681a4a5a6a68bd694bff39c34f 480 SUPERFAMILY SSF56176 5 225 1.45E-47 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Gferi_RS04605 fa2d23681a4a5a6a68bd694bff39c34f 480 SUPERFAMILY SSF55103 204 477 1.8E-22 T 11-11-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Gferi_RS04605 fa2d23681a4a5a6a68bd694bff39c34f 480 Gene3D G3DSA:3.30.43.10 4 106 8.2E-17 T 11-11-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Gferi_RS04605 fa2d23681a4a5a6a68bd694bff39c34f 480 Pfam PF02913 FAD linked oxidases, C-terminal domain 228 475 6.1E-18 T 11-11-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 Pfam PF00591 Glycosyl transferase family, a/b domain 78 306 1.4E-42 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 SMART SM00941 345 419 3.6E-27 T 11-11-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 66 3.7E-19 T 11-11-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 PIRSF PIRSF000478 1 434 4.1E-167 T 11-11-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 Gene3D G3DSA:3.40.1030.10 70 332 1.4E-114 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 SUPERFAMILY SSF54680 332 433 1.15E-26 T 11-11-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 Gene3D G3DSA:3.90.1170.30 333 424 1.6E-27 T 11-11-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 11-11-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 Gene3D G3DSA:1.20.970.10 1 67 3.3E-30 T 11-11-2016 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 SUPERFAMILY SSF47648 1 69 1.7E-20 T 11-11-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 SUPERFAMILY SSF52418 69 329 5.23E-93 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 345 419 2.7E-23 T 11-11-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS00170 100bd8d86e573722a11cf38455da5d2e 441 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 3 418 5.2E-178 T 11-11-2016 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS10480 1501b7032d11203694776b04f4d480dc 300 Gene3D G3DSA:1.10.1670.10 228 285 2.1E-14 T 11-11-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Gferi_RS10480 1501b7032d11203694776b04f4d480dc 300 Gene3D G3DSA:3.30.310.40 19 83 3.6E-9 T 11-11-2016 Gferi_RS10480 1501b7032d11203694776b04f4d480dc 300 SUPERFAMILY SSF55945 12 113 2.35E-22 T 11-11-2016 Gferi_RS10480 1501b7032d11203694776b04f4d480dc 300 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 120 253 7.1E-7 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Gferi_RS10480 1501b7032d11203694776b04f4d480dc 300 Pfam PF07934 8-oxoguanine DNA glycosylase, N-terminal domain 18 119 8.4E-24 T 11-11-2016 IPR012904 8-oxoguanine DNA glycosylase, N-terminal GO:0003684|GO:0006289|GO:0008534 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357|Reactome: R-HSA-5649702 Gferi_RS10480 1501b7032d11203694776b04f4d480dc 300 SUPERFAMILY SSF48150 114 287 4.55E-40 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Gferi_RS10480 1501b7032d11203694776b04f4d480dc 300 Gene3D G3DSA:1.10.340.30 114 227 9.0E-41 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Gferi_RS10480 1501b7032d11203694776b04f4d480dc 300 SMART SM00478 132 287 3.2E-13 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Gferi_RS09230 ed7ba1f8302aa5cd2945879112b5da5d 179 Pfam PF02417 Chromate transporter 6 169 2.0E-49 T 11-11-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 Gferi_RS13270 bbd7f021be434ed9470101dac21baca7 111 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 110 18.844 T 11-11-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Gferi_RS13270 bbd7f021be434ed9470101dac21baca7 111 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 7 105 5.0E-26 T 11-11-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Gferi_RS13270 bbd7f021be434ed9470101dac21baca7 111 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 2 110 6.2E-27 T 11-11-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Gferi_RS13270 bbd7f021be434ed9470101dac21baca7 111 Pfam PF00825 Ribonuclease P 1 106 1.8E-31 T 11-11-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Gferi_RS13270 bbd7f021be434ed9470101dac21baca7 111 SUPERFAMILY SSF54211 1 109 1.34E-29 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS13270 bbd7f021be434ed9470101dac21baca7 111 Gene3D G3DSA:3.30.230.10 1 109 1.1E-34 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS00920 dc859377a159a3b51431d14870f36bba 138 Pfam PF03748 Flagellar basal body-associated protein FliL 47 138 4.5E-18 T 11-11-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 356 9.9E-61 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 PIRSF PIRSF037226 1 390 1.3E-115 T 11-11-2016 IPR017144 Peptidase M20A, amidohydrolase, predicted Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 Pfam PF07687 Peptidase dimerisation domain 167 258 8.2E-6 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 Gene3D G3DSA:3.30.70.360 167 272 7.0E-23 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 SUPERFAMILY SSF53187 6 179 2.51E-55 T 11-11-2016 Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 SUPERFAMILY SSF53187 288 372 2.51E-55 T 11-11-2016 Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 Gene3D G3DSA:3.40.630.10 2 166 5.8E-56 T 11-11-2016 Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 Gene3D G3DSA:3.40.630.10 275 383 5.8E-56 T 11-11-2016 Gferi_RS25130 c42549338fbaf05bf75d650474efa9e7 391 SUPERFAMILY SSF55031 168 271 5.68E-22 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS24265 ba1dd87007ee3689f8273e54d42b2a9d 250 Gene3D G3DSA:3.30.950.10 110 228 1.1E-37 T 11-11-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24265 ba1dd87007ee3689f8273e54d42b2a9d 250 SUPERFAMILY SSF53790 1 246 6.94E-68 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24265 ba1dd87007ee3689f8273e54d42b2a9d 250 Gene3D G3DSA:3.40.1010.10 2 109 8.4E-32 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24265 ba1dd87007ee3689f8273e54d42b2a9d 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 206 1.1E-47 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24265 ba1dd87007ee3689f8273e54d42b2a9d 250 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 2 246 4.2E-104 T 11-11-2016 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 Gferi_RS24265 ba1dd87007ee3689f8273e54d42b2a9d 250 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 5 19 - T 11-11-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Gferi_RS20015 6f356b420c6a9af1f6b6850af92e3589 251 Gene3D G3DSA:3.40.50.150 6 221 3.5E-34 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS20015 6f356b420c6a9af1f6b6850af92e3589 251 SUPERFAMILY SSF53335 4 222 1.41E-34 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS20015 6f356b420c6a9af1f6b6850af92e3589 251 Pfam PF08241 Methyltransferase domain 51 144 1.8E-19 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Gferi_RS22910 20b0695aa92705909a671988239d9408 293 Gene3D G3DSA:3.20.20.70 20 209 1.5E-8 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS22910 20b0695aa92705909a671988239d9408 293 Pfam PF04055 Radical SAM superfamily 27 188 7.0E-12 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS22910 20b0695aa92705909a671988239d9408 293 SMART SM00729 23 246 0.0019 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS22910 20b0695aa92705909a671988239d9408 293 SUPERFAMILY SSF102114 23 209 6.28E-9 T 11-11-2016 Gferi_RS20590 108c5bf4227f7b7cd83cffbca5c4a459 228 Gene3D G3DSA:3.40.50.300 1 219 1.4E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20590 108c5bf4227f7b7cd83cffbca5c4a459 228 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 213 3.7E-90 T 11-11-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 Gferi_RS20590 108c5bf4227f7b7cd83cffbca5c4a459 228 SMART SM00382 27 214 3.1E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20590 108c5bf4227f7b7cd83cffbca5c4a459 228 SUPERFAMILY SSF52540 1 220 5.84E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20590 108c5bf4227f7b7cd83cffbca5c4a459 228 Pfam PF00005 ABC transporter 18 165 6.3E-36 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS20590 108c5bf4227f7b7cd83cffbca5c4a459 228 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS11070 ccf5ae216484ce91adbc9e350f01d2c4 452 Gene3D G3DSA:3.90.1150.10 321 445 4.1E-35 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS11070 ccf5ae216484ce91adbc9e350f01d2c4 452 Gene3D G3DSA:3.40.640.10 56 320 9.3E-75 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS11070 ccf5ae216484ce91adbc9e350f01d2c4 452 SUPERFAMILY SSF53383 14 444 1.53E-115 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS11070 ccf5ae216484ce91adbc9e350f01d2c4 452 Pfam PF00202 Aminotransferase class-III 21 444 3.3E-103 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS11070 ccf5ae216484ce91adbc9e350f01d2c4 452 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 246 282 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS12070 59d541dfc546a065e2d3ff3cc786a081 87 Gene3D G3DSA:3.40.250.10 3 82 3.9E-22 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS12070 59d541dfc546a065e2d3ff3cc786a081 87 SUPERFAMILY SSF52821 4 82 7.2E-20 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS12070 59d541dfc546a065e2d3ff3cc786a081 87 Pfam PF00581 Rhodanese-like domain 5 82 4.1E-13 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS12070 59d541dfc546a065e2d3ff3cc786a081 87 SMART SM00450 1 87 7.1E-6 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 SUPERFAMILY SSF55874 332 481 8.51E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 Pfam PF00672 HAMP domain 173 236 1.0E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 SMART SM00387 372 484 2.8E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 Gene3D G3DSA:3.30.565.10 314 482 4.9E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 462 6.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 481 6.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 437 6.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 423 6.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 Pfam PF00512 His Kinase A (phospho-acceptor) domain 263 326 2.9E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 SMART SM00304 189 240 0.008 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 SUPERFAMILY SSF47384 249 326 1.08E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 SUPERFAMILY SSF158472 192 239 3.66E-5 T 11-11-2016 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 373 481 2.7E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 Gene3D G3DSA:1.10.287.130 254 313 3.2E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07755 4a9fc6a46219ba8cc75973f7f75bc8c4 487 SMART SM00388 262 328 5.0E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15335 fa7adc44cae8288efa1d62737653fdb6 265 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 2 264 18.036 T 11-11-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Gferi_RS15335 fa7adc44cae8288efa1d62737653fdb6 265 Pfam PF02673 Bacitracin resistance protein BacA 7 259 8.6E-80 T 11-11-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Gferi_RS15335 fa7adc44cae8288efa1d62737653fdb6 265 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 7 257 2.9E-76 T 11-11-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 Gene3D G3DSA:3.30.190.20 162 226 5.6E-48 T 11-11-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 Gene3D G3DSA:3.30.190.20 17 68 5.6E-48 T 11-11-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 Gene3D G3DSA:3.40.50.790 69 160 4.5E-41 T 11-11-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 SUPERFAMILY SSF56808 6 226 2.22E-82 T 11-11-2016 IPR023674 Ribosomal protein L1-like Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 PIRSF PIRSF002155 1 228 2.1E-80 T 11-11-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 Pfam PF00687 Ribosomal protein L1p/L10e family 31 221 8.4E-58 T 11-11-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 226 2.3E-101 T 11-11-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 230 43.331 T 11-11-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Gferi_RS17330 e9922a44b248ef3d3411627310cb3b1e 232 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 140 - T 11-11-2016 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS23635 59d16d69a740e589fb7800aedeec0c31 761 SUPERFAMILY SSF48371 333 659 3.96E-14 T 11-11-2016 IPR016024 Armadillo-type fold GO:0005488 Gferi_RS23635 59d16d69a740e589fb7800aedeec0c31 761 SUPERFAMILY SSF57997 33 129 1.99E-6 T 11-11-2016 Gferi_RS23635 59d16d69a740e589fb7800aedeec0c31 761 Gene3D G3DSA:1.20.58.60 20 109 5.0E-6 T 11-11-2016 Gferi_RS23635 59d16d69a740e589fb7800aedeec0c31 761 Gene3D G3DSA:1.25.10.10 406 609 6.3E-8 T 11-11-2016 IPR011989 Armadillo-like helical Gferi_RS25335 3056dde47d0154702787375f8db1057b 300 Pfam PF16868 NMT1-like family 10 297 4.3E-83 T 11-11-2016 IPR011852 TRAP transporter solute receptor, TAXI family Gferi_RS25335 3056dde47d0154702787375f8db1057b 300 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 5 297 1.6E-80 T 11-11-2016 IPR011852 TRAP transporter solute receptor, TAXI family Gferi_RS25335 3056dde47d0154702787375f8db1057b 300 Gene3D G3DSA:3.40.190.10 6 86 1.0E-53 T 11-11-2016 Gferi_RS25335 3056dde47d0154702787375f8db1057b 300 Gene3D G3DSA:3.40.190.10 230 299 1.0E-53 T 11-11-2016 Gferi_RS25335 3056dde47d0154702787375f8db1057b 300 Gene3D G3DSA:3.40.190.10 96 229 1.7E-28 T 11-11-2016 Gferi_RS25335 3056dde47d0154702787375f8db1057b 300 SUPERFAMILY SSF53850 6 299 4.53E-69 T 11-11-2016 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 Gene3D G3DSA:3.30.1490.20 153 215 1.7E-23 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 Pfam PF07478 D-ala D-ala ligase C-terminus 137 341 1.2E-69 T 11-11-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 PIRSF PIRSF039102 1 352 2.2E-107 T 11-11-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 Gene3D G3DSA:3.30.470.20 218 353 8.7E-43 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 342 2.8E-103 T 11-11-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 Pfam PF01820 D-ala D-ala ligase N-terminus 4 119 6.5E-30 T 11-11-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 Gene3D G3DSA:3.40.50.20 1 119 9.1E-34 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 285 313 - T 11-11-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 344 38.848 T 11-11-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 SUPERFAMILY SSF52440 1 128 5.37E-35 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 97 108 - T 11-11-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02890 a286335a6e1e4afa147caec54d6ef74d 360 SUPERFAMILY SSF56059 130 349 1.1E-52 T 11-11-2016 Gferi_RS07705 fda5d741c889a56c5e659d514ad09448 128 TIGRFAM TIGR02698 CopY_TcrY: copper transport repressor, CopY/TcrY family 6 125 4.0E-36 T 11-11-2016 IPR014071 Copper transport repressor CopY/TcrY Gferi_RS07705 fda5d741c889a56c5e659d514ad09448 128 Gene3D G3DSA:1.10.10.10 5 80 2.8E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07705 fda5d741c889a56c5e659d514ad09448 128 PIRSF PIRSF019455 2 128 3.8E-40 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS07705 fda5d741c889a56c5e659d514ad09448 128 SUPERFAMILY SSF46785 5 123 2.27E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07705 fda5d741c889a56c5e659d514ad09448 128 Pfam PF03965 Penicillinase repressor 7 121 2.5E-36 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS22245 99079ef089486b69ef498c293b1a71a4 618 SMART SM00382 388 574 3.6E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22245 99079ef089486b69ef498c293b1a71a4 618 SUPERFAMILY SSF52540 350 598 4.53E-86 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22245 99079ef089486b69ef498c293b1a71a4 618 ProSitePatterns PS00211 ABC transporters family signature. 500 514 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22245 99079ef089486b69ef498c293b1a71a4 618 SUPERFAMILY SSF90123 16 350 2.75E-46 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS22245 99079ef089486b69ef498c293b1a71a4 618 Pfam PF00664 ABC transporter transmembrane region 34 305 3.2E-16 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS22245 99079ef089486b69ef498c293b1a71a4 618 Gene3D G3DSA:3.40.50.300 357 594 8.8E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22245 99079ef089486b69ef498c293b1a71a4 618 Pfam PF00005 ABC transporter 382 528 4.7E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22245 99079ef089486b69ef498c293b1a71a4 618 Gene3D G3DSA:1.20.1560.10 21 347 1.5E-41 T 11-11-2016 Gferi_RS19295 245e98d4561fd0103fb341b35260d9f4 222 Pfam PF03483 B3/4 domain 65 186 2.0E-9 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS19295 245e98d4561fd0103fb341b35260d9f4 222 SMART SM00873 60 212 0.0016 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS19295 245e98d4561fd0103fb341b35260d9f4 222 Gene3D G3DSA:3.50.40.10 116 185 9.5E-7 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS19295 245e98d4561fd0103fb341b35260d9f4 222 SUPERFAMILY SSF56037 77 206 1.05E-11 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 SUPERFAMILY SSF54211 224 394 1.33E-61 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 8 18 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 315 331 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 223 245 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 197 210 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 589 601 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 182 197 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 473 482 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 605 621 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 377 397 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR01159 DNA gyrase subunit B signature 363 377 1.5E-76 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 Gene3D G3DSA:3.40.50.670 407 617 7.2E-100 T 11-11-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 SMART SM00387 33 162 2.0E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 Gene3D G3DSA:3.30.565.10 8 217 2.8E-88 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 154 3.6E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 Pfam PF00204 DNA gyrase B 224 393 1.5E-64 T 11-11-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 SUPERFAMILY SSF56719 397 628 2.51E-91 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 564 625 1.4E-30 T 11-11-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 8 636 0.0 T 11-11-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 527 539 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 37 52 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 115 129 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 423 437 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 568 584 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 489 505 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 72 85 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 507 524 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 PRINTS PR00418 DNA topoisomerase II family signature 271 284 1.2E-73 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 Gene3D G3DSA:3.30.230.10 223 395 4.1E-75 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 5 636 95.448 T 11-11-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 ProSitePatterns PS00177 DNA topoisomerase II signature. 425 433 - T 11-11-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 Pfam PF01751 Toprim domain 422 533 1.3E-18 T 11-11-2016 IPR006171 Toprim domain Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 SMART SM00433 37 629 0.0 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS13235 b01f4bbd28824ca7b0853d5a03a6062f 636 SUPERFAMILY SSF55874 8 215 1.27E-72 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09520 5fabbed71a602387ffd415a300d7c915 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 308 2.4E-30 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09520 5fabbed71a602387ffd415a300d7c915 308 SUPERFAMILY SSF161098 102 307 4.84E-30 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09520 5fabbed71a602387ffd415a300d7c915 308 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 31 81 1.7E-15 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Gferi_RS09520 5fabbed71a602387ffd415a300d7c915 308 Gene3D G3DSA:1.10.3720.10 102 304 7.5E-28 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS27290 bbfe555f8efe0ef24b227963b75d3520 59 Pfam PF01380 SIS domain 1 58 2.3E-6 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS20350 4eb6019ea7ffdd7c28bb6fe846d7450e 275 Gene3D G3DSA:3.20.20.370 58 267 3.2E-60 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS20350 4eb6019ea7ffdd7c28bb6fe846d7450e 275 SUPERFAMILY SSF88713 65 267 5.44E-52 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS20350 4eb6019ea7ffdd7c28bb6fe846d7450e 275 Pfam PF01522 Polysaccharide deacetylase 66 174 2.7E-29 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS04485 df7a4a0bb0a9fddc653f16a41087f580 105 SUPERFAMILY SSF52794 2 97 9.42E-35 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS04485 df7a4a0bb0a9fddc653f16a41087f580 105 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 96 1.0E-21 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS04485 df7a4a0bb0a9fddc653f16a41087f580 105 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 88 1.2E-35 T 11-11-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 Gferi_RS04485 df7a4a0bb0a9fddc653f16a41087f580 105 Gene3D G3DSA:3.40.50.2300 1 98 6.4E-41 T 11-11-2016 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Gene3D G3DSA:3.30.450.40 149 202 4.6E-5 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 232 363 7.1E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 SMART SM00387 617 729 2.5E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 SUPERFAMILY SSF55785 354 482 7.96E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Gene3D G3DSA:1.10.287.130 494 557 5.4E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Gene3D G3DSA:3.30.450.20 220 356 1.4E-12 T 11-11-2016 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Gene3D G3DSA:3.30.450.20 362 488 4.6E-6 T 11-11-2016 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Pfam PF13426 PAS domain 417 487 0.31 T 11-11-2016 IPR000014 PAS domain Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 SMART SM00388 502 571 2.4E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 622 728 5.6E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 SUPERFAMILY SSF55874 560 727 1.44E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 SUPERFAMILY SSF55785 220 356 5.52E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Pfam PF00512 His Kinase A (phospho-acceptor) domain 503 571 9.3E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Gene3D G3DSA:3.30.565.10 558 726 6.1E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 SUPERFAMILY SSF47384 492 571 4.32E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 672 682 1.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 668 1.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 689 707 1.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 PRINTS PR00344 Bacterial sensor protein C-terminal signature 713 726 1.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS16820 0fd3537e7149143a0b540153b009239e 759 Pfam PF13188 PAS domain 235 282 9.6E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS22465 d652ae69c2acd970682223ae0e8e7e02 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 53 3.5E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS22465 d652ae69c2acd970682223ae0e8e7e02 184 Pfam PF14278 Transcriptional regulator C-terminal region 79 153 6.1E-8 T 11-11-2016 Gferi_RS22465 d652ae69c2acd970682223ae0e8e7e02 184 Gene3D G3DSA:1.10.357.10 4 172 9.0E-15 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS22465 d652ae69c2acd970682223ae0e8e7e02 184 SUPERFAMILY SSF46689 3 62 3.06E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS20135 ccd16dd42a8fc19391f434e825d524ca 74 SUPERFAMILY SSF159127 1 69 4.71E-25 T 11-11-2016 Gferi_RS20135 ccd16dd42a8fc19391f434e825d524ca 74 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 7.4E-18 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS20135 ccd16dd42a8fc19391f434e825d524ca 74 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 7.4E-18 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS20135 ccd16dd42a8fc19391f434e825d524ca 74 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 38 54 7.4E-18 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS20135 ccd16dd42a8fc19391f434e825d524ca 74 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 56 68 7.4E-18 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS20135 ccd16dd42a8fc19391f434e825d524ca 74 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 68 1.7E-23 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS20135 ccd16dd42a8fc19391f434e825d524ca 74 Pfam PF01455 HupF/HypC family 1 65 2.0E-27 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS05310 a783ad73046b94febe2d70a6d7687029 101 Pfam PF03551 Transcriptional regulator PadR-like family 18 87 9.7E-21 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS05310 a783ad73046b94febe2d70a6d7687029 101 Gene3D G3DSA:1.10.10.10 2 99 1.1E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05310 a783ad73046b94febe2d70a6d7687029 101 SUPERFAMILY SSF46785 3 98 2.12E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24355 2c147f5df6e2606e451adc1196dca361 156 Pfam PF00588 SpoU rRNA Methylase family 3 144 7.0E-37 T 11-11-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Gferi_RS24355 2c147f5df6e2606e451adc1196dca361 156 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 2 155 3.0E-61 T 11-11-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 Gferi_RS24355 2c147f5df6e2606e451adc1196dca361 156 SUPERFAMILY SSF75217 3 154 1.31E-44 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases Gferi_RS24355 2c147f5df6e2606e451adc1196dca361 156 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 3 153 35.648 T 11-11-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 Gferi_RS24355 2c147f5df6e2606e451adc1196dca361 156 PIRSF PIRSF029256 2 156 2.2E-66 T 11-11-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 Gferi_RS24355 2c147f5df6e2606e451adc1196dca361 156 Gene3D G3DSA:3.40.1280.10 2 155 2.4E-65 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Gferi_RS10105 1a32e310ad9043b0a7d0840a366b2d1e 334 SUPERFAMILY SSF54506 1 332 8.44E-113 T 11-11-2016 Gferi_RS10105 1a32e310ad9043b0a7d0840a366b2d1e 334 Gene3D G3DSA:3.10.310.10 156 322 2.0E-70 T 11-11-2016 Gferi_RS10105 1a32e310ad9043b0a7d0840a366b2d1e 334 PIRSF PIRSF029792 1 334 1.1E-148 T 11-11-2016 IPR008794 Proline racemase family Gferi_RS10105 1a32e310ad9043b0a7d0840a366b2d1e 334 Pfam PF05544 Proline racemase 10 332 4.6E-131 T 11-11-2016 IPR008794 Proline racemase family Gferi_RS10105 1a32e310ad9043b0a7d0840a366b2d1e 334 Gene3D G3DSA:3.10.310.10 1 155 1.5E-69 T 11-11-2016 Gferi_RS22125 124042abd355dd5e2d2e05e0fb8bc90a 293 SUPERFAMILY SSF161098 55 279 4.84E-57 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22125 124042abd355dd5e2d2e05e0fb8bc90a 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 284 2.5E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22125 124042abd355dd5e2d2e05e0fb8bc90a 293 Gene3D G3DSA:1.10.3720.10 61 286 1.9E-59 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09925 06bd915fe1e4b7b52b2b28f79700113d 362 SUPERFAMILY SSF51604 112 354 8.78E-72 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS09925 06bd915fe1e4b7b52b2b28f79700113d 362 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 9 124 6.5E-22 T 11-11-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Gferi_RS09925 06bd915fe1e4b7b52b2b28f79700113d 362 SMART SM00922 141 239 6.6E-28 T 11-11-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Gferi_RS09925 06bd915fe1e4b7b52b2b28f79700113d 362 Pfam PF13378 Enolase C-terminal domain-like 143 354 1.1E-51 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS09925 06bd915fe1e4b7b52b2b28f79700113d 362 Gene3D G3DSA:3.20.20.120 123 354 2.9E-78 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS09925 06bd915fe1e4b7b52b2b28f79700113d 362 SUPERFAMILY SSF54826 1 125 1.33E-32 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS09925 06bd915fe1e4b7b52b2b28f79700113d 362 Gene3D G3DSA:3.30.390.10 1 122 1.2E-40 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS07015 23c2c22e86e659ab28887f31bb8745c8 238 PIRSF PIRSF039137 1 235 1.2E-113 T 11-11-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Gferi_RS07015 23c2c22e86e659ab28887f31bb8745c8 238 Pfam PF00005 ABC transporter 18 162 3.5E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS07015 23c2c22e86e659ab28887f31bb8745c8 238 Gene3D G3DSA:3.40.50.300 1 227 1.5E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07015 23c2c22e86e659ab28887f31bb8745c8 238 SUPERFAMILY SSF52540 2 232 6.85E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07015 23c2c22e86e659ab28887f31bb8745c8 238 SMART SM00382 26 211 5.0E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07015 23c2c22e86e659ab28887f31bb8745c8 238 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 Pfam PF07836 DmpG-like communication domain 272 332 1.7E-29 T 11-11-2016 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 335 164.276 T 11-11-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 Pfam PF00682 HMGL-like 5 262 8.3E-58 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 270 334 2.0E-27 T 11-11-2016 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 SUPERFAMILY SSF89000 286 334 2.79E-18 T 11-11-2016 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 Gene3D G3DSA:3.20.20.70 3 262 1.4E-53 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 SUPERFAMILY SSF51569 2 271 8.42E-68 T 11-11-2016 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 Gene3D G3DSA:1.10.8.60 274 335 3.4E-30 T 11-11-2016 Gferi_RS17980 e71233b3997c27eed3b23dd1b199bbf3 335 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 5 334 2.0E-151 T 11-11-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 Gferi_RS11065 d0536052d2f6c955ccac607cfcbf106a 270 Gene3D G3DSA:3.20.20.70 1 270 2.7E-95 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS11065 d0536052d2f6c955ccac607cfcbf106a 270 Pfam PF05853 beta-keto acid cleavage enzyme 3 270 2.4E-91 T 11-11-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24 Gferi_RS25720 c14aba6eb57c08317c96000b0fcd889f 166 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 73 84 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS25720 c14aba6eb57c08317c96000b0fcd889f 166 Pfam PF00037 4Fe-4S binding domain 67 89 8.7E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS25720 c14aba6eb57c08317c96000b0fcd889f 166 Gene3D G3DSA:3.30.70.20 42 100 8.0E-12 T 11-11-2016 Gferi_RS25720 c14aba6eb57c08317c96000b0fcd889f 166 SUPERFAMILY SSF54862 42 101 4.33E-13 T 11-11-2016 Gferi_RS22720 5c92b03cf47c35aabc8684a6d0a17f61 566 Gene3D G3DSA:1.10.3720.10 32 286 1.1E-52 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22720 5c92b03cf47c35aabc8684a6d0a17f61 566 SUPERFAMILY SSF161098 24 286 2.62E-54 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22720 5c92b03cf47c35aabc8684a6d0a17f61 566 Gene3D G3DSA:1.10.3720.10 311 551 1.0E-35 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22720 5c92b03cf47c35aabc8684a6d0a17f61 566 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 376 553 1.5E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22720 5c92b03cf47c35aabc8684a6d0a17f61 566 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 282 5.2E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22720 5c92b03cf47c35aabc8684a6d0a17f61 566 SUPERFAMILY SSF161098 311 555 3.79E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS11780 f60b7885fe8e1af185a47e7cc043108a 284 Gene3D G3DSA:1.10.3470.10 46 264 2.5E-5 T 11-11-2016 IPR029022 ABC transporter, BtuC-like Gferi_RS11780 f60b7885fe8e1af185a47e7cc043108a 284 Pfam PF00950 ABC 3 transport family 6 261 8.0E-67 T 11-11-2016 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Gferi_RS11780 f60b7885fe8e1af185a47e7cc043108a 284 SUPERFAMILY SSF81345 3 260 1.83E-37 T 11-11-2016 IPR029022 ABC transporter, BtuC-like Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 Gene3D G3DSA:3.40.50.300 337 514 4.8E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 365 378 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 Pfam PF08461 Ribonuclease R winged-helix domain 627 684 2.8E-5 T 11-11-2016 IPR013668 Ribonuclease R winged-helix domain Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 428 443 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 SMART SM00382 361 505 1.5E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 SUPERFAMILY SSF55785 213 276 6.28E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 SUPERFAMILY SSF52540 340 567 3.79E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 Pfam PF00158 Sigma-54 interaction domain 341 508 9.4E-69 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 Gene3D G3DSA:1.10.8.60 515 584 1.6E-12 T 11-11-2016 Gferi_RS16070 6f1bdcbab45985fb0e4fd682c6032e99 697 Gene3D G3DSA:1.10.10.10 621 695 4.6E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 Gene3D G3DSA:3.90.550.10 1 246 5.6E-76 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 3 453 40.622 T 11-11-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 Pfam PF00483 Nucleotidyl transferase 6 222 9.0E-22 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 SUPERFAMILY SSF51161 251 453 1.54E-49 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 SUPERFAMILY SSF53448 3 254 1.88E-65 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 Gene3D G3DSA:2.160.10.10 247 324 2.9E-19 T 11-11-2016 Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 396 430 8.7E-4 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 268 301 3.3E-7 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 319 352 4.0E-8 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 5 454 1.4E-180 T 11-11-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 Gferi_RS16725 d94122ff3e3a5470f5652a0ebb33347c 460 Gene3D G3DSA:2.160.10.10 325 453 1.7E-33 T 11-11-2016 Gferi_RS25620 d0a34f9c6d87bfec0fdee77efb798936 416 PIRSF PIRSF006304 1 415 7.4E-164 T 11-11-2016 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 Gferi_RS25620 d0a34f9c6d87bfec0fdee77efb798936 416 Pfam PF03611 PTS system sugar-specific permease component 7 389 6.5E-89 T 11-11-2016 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 Gferi_RS01870 17a3b1c3dcfd152cd6b98084dd2c4e22 197 Pfam PF01895 PhoU domain 101 185 1.6E-19 T 11-11-2016 IPR026022 PhoU domain Gferi_RS01870 17a3b1c3dcfd152cd6b98084dd2c4e22 197 Pfam PF01895 PhoU domain 1 86 3.6E-22 T 11-11-2016 IPR026022 PhoU domain Gferi_RS01870 17a3b1c3dcfd152cd6b98084dd2c4e22 197 Gene3D G3DSA:1.20.58.220 99 193 4.4E-29 T 11-11-2016 Gferi_RS01870 17a3b1c3dcfd152cd6b98084dd2c4e22 197 SUPERFAMILY SSF109755 1 194 6.59E-64 T 11-11-2016 Gferi_RS01870 17a3b1c3dcfd152cd6b98084dd2c4e22 197 PIRSF PIRSF003107 1 195 4.8E-62 T 11-11-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Gferi_RS01870 17a3b1c3dcfd152cd6b98084dd2c4e22 197 Gene3D G3DSA:1.20.58.220 1 91 1.1E-28 T 11-11-2016 Gferi_RS01870 17a3b1c3dcfd152cd6b98084dd2c4e22 197 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 1 193 7.4E-64 T 11-11-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Gferi_RS16370 510855347ab36d0eaa03942b1b5d1ac5 269 Gene3D G3DSA:3.20.20.20 1 260 2.8E-80 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16370 510855347ab36d0eaa03942b1b5d1ac5 269 Pfam PF00809 Pterin binding enzyme 6 226 8.1E-21 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16370 510855347ab36d0eaa03942b1b5d1ac5 269 SUPERFAMILY SSF51717 1 260 1.23E-76 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS18020 3ba411ce8e12f200fc29ab31357e2a4e 246 Pfam PF00731 AIR carboxylase 119 243 1.0E-15 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS18020 3ba411ce8e12f200fc29ab31357e2a4e 246 SUPERFAMILY SSF52255 117 245 6.8E-30 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS18020 3ba411ce8e12f200fc29ab31357e2a4e 246 SMART SM01001 117 246 1.0E-36 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS18020 3ba411ce8e12f200fc29ab31357e2a4e 246 Gene3D G3DSA:3.40.50.7700 117 244 1.8E-25 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Gferi_RS11035 e17ce20e419e78795f266622905b1912 170 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 17 163 1.4E-31 T 11-11-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 Gferi_RS11035 e17ce20e419e78795f266622905b1912 170 Hamap MF_01398 ATP synthase subunit b [atpF]. 8 163 13.508 T 11-11-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Gferi_RS11035 e17ce20e419e78795f266622905b1912 170 Gene3D G3DSA:1.20.5.620 72 129 5.9E-6 T 11-11-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain Gferi_RS11035 e17ce20e419e78795f266622905b1912 170 SUPERFAMILY SSF81573 72 128 1.29E-7 T 11-11-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain Gferi_RS11035 e17ce20e419e78795f266622905b1912 170 Pfam PF00430 ATP synthase B/B' CF(0) 14 144 9.8E-28 T 11-11-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 Gene3D G3DSA:3.40.430.10 128 364 2.2E-78 T 11-11-2016 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 Gene3D G3DSA:3.40.140.10 2 127 1.5E-35 T 11-11-2016 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 SUPERFAMILY SSF53597 143 363 8.18E-60 T 11-11-2016 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 145 361 1.0E-65 T 11-11-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 Pfam PF01872 RibD C-terminal domain 146 357 3.9E-51 T 11-11-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 SUPERFAMILY SSF53927 2 143 1.24E-47 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 PIRSF PIRSF006769 1 365 7.5E-135 T 11-11-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 6 357 1.7E-118 T 11-11-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 Gferi_RS20220 5e09ecf0be92f1a76ce7c6b5543270ad 367 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 98 1.3E-20 T 11-11-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 288 7.3E-54 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 Gene3D G3DSA:3.50.50.60 104 297 7.9E-52 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 97 115 3.4E-23 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 3.4E-23 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 275 3.4E-23 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 3.4E-23 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 3.4E-23 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 SUPERFAMILY SSF51905 1 297 9.18E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 2.3E-12 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 268 275 2.3E-12 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 2.3E-12 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 243 2.3E-12 T 11-11-2016 Gferi_RS24875 832adef7fe902f670be3266da587ba44 413 Gene3D G3DSA:3.50.50.60 1 103 2.5E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 Pfam PF01336 OB-fold nucleic acid binding domain 18 97 1.2E-14 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 PRINTS PR01042 Aspartyl-tRNA synthetase signature 346 362 2.7E-15 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 PRINTS PR01042 Aspartyl-tRNA synthetase signature 198 211 2.7E-15 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 PRINTS PR01042 Aspartyl-tRNA synthetase signature 386 400 2.7E-15 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 PRINTS PR01042 Aspartyl-tRNA synthetase signature 182 194 2.7E-15 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 Pfam PF00152 tRNA synthetases class II (D, K and N) 113 425 1.2E-84 T 11-11-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 SUPERFAMILY SSF50249 11 104 1.6E-23 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 3 431 42.361 T 11-11-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 SUPERFAMILY SSF55681 112 425 4.15E-97 T 11-11-2016 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 2 430 8.1E-161 T 11-11-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 Gene3D G3DSA:3.30.930.10 104 429 2.5E-118 T 11-11-2016 Gferi_RS00595 6bef7c86ff1cba9c787a23a8d1bc5ee7 431 Gene3D G3DSA:2.40.50.140 6 103 8.3E-25 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS08065 9b96d1fe539a4f822d4a1cb7d71f73cb 515 Gene3D G3DSA:3.90.226.10 5 259 2.9E-82 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS08065 9b96d1fe539a4f822d4a1cb7d71f73cb 515 Gene3D G3DSA:3.90.226.10 265 514 5.2E-96 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS08065 9b96d1fe539a4f822d4a1cb7d71f73cb 515 Pfam PF01039 Carboxyl transferase domain 27 513 1.9E-201 T 11-11-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS08065 9b96d1fe539a4f822d4a1cb7d71f73cb 515 SUPERFAMILY SSF52096 5 255 5.69E-80 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS08065 9b96d1fe539a4f822d4a1cb7d71f73cb 515 SUPERFAMILY SSF52096 224 514 3.13E-93 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS16895 9b96d1fe539a4f822d4a1cb7d71f73cb 515 Gene3D G3DSA:3.90.226.10 5 259 2.9E-82 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS16895 9b96d1fe539a4f822d4a1cb7d71f73cb 515 Gene3D G3DSA:3.90.226.10 265 514 5.2E-96 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS16895 9b96d1fe539a4f822d4a1cb7d71f73cb 515 Pfam PF01039 Carboxyl transferase domain 27 513 1.9E-201 T 11-11-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS16895 9b96d1fe539a4f822d4a1cb7d71f73cb 515 SUPERFAMILY SSF52096 5 255 5.69E-80 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS16895 9b96d1fe539a4f822d4a1cb7d71f73cb 515 SUPERFAMILY SSF52096 224 514 3.13E-93 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 Pfam PF02355 Protein export membrane protein 235 404 1.7E-17 T 11-11-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 159 395 2.9E-71 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 PRINTS PR00702 Acriflavin resistance protein family signature 379 402 7.9E-11 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 PRINTS PR00702 Acriflavin resistance protein family signature 251 274 7.9E-11 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 PRINTS PR00702 Acriflavin resistance protein family signature 304 328 7.9E-11 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 SUPERFAMILY SSF82866 212 407 2.35E-41 T 11-11-2016 Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 Gene3D G3DSA:1.20.1640.10 211 409 2.2E-27 T 11-11-2016 Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 131 402 4.5E-101 T 11-11-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Gferi_RS26655 cf7561a5e3176d440b2373652f020647 419 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 417 38.198 T 11-11-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Gferi_RS22835 e1990d3424974118713725e7009eb67b 209 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 126 139 - T 11-11-2016 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Gferi_RS22835 e1990d3424974118713725e7009eb67b 209 Gene3D G3DSA:3.20.20.70 2 208 6.2E-70 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS22835 e1990d3424974118713725e7009eb67b 209 Pfam PF01081 KDPG and KHG aldolase 11 195 1.2E-40 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Gferi_RS22835 e1990d3424974118713725e7009eb67b 209 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 11 207 6.5E-53 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Gferi_RS22835 e1990d3424974118713725e7009eb67b 209 SUPERFAMILY SSF51569 3 207 5.68E-59 T 11-11-2016 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 157 212 2.7E-15 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 2.9E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 2.9E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 2.9E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 SUPERFAMILY SSF46894 150 218 3.16E-19 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 SUPERFAMILY SSF52172 3 127 1.24E-32 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 Gene3D G3DSA:1.10.10.10 163 217 1.0E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 SMART SM00448 3 115 2.8E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 SMART SM00421 155 212 6.8E-21 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 Pfam PF00072 Response regulator receiver domain 6 115 4.9E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS04920 faec4b671b0264e59cb0ccddef3b8cb6 221 Gene3D G3DSA:3.40.50.2300 2 162 6.1E-37 T 11-11-2016 Gferi_RS00360 bd550c44710863d2fcd2c86e98673e37 87 Pfam PF10719 Late competence development protein ComFB 3 83 1.2E-23 T 11-11-2016 IPR019657 Late competence development protein ComFB Gferi_RS09700 620584dbcb17cb0e2718a2abc11cdc37 338 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 68 321 5.8E-43 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS09700 620584dbcb17cb0e2718a2abc11cdc37 338 SUPERFAMILY SSF53850 142 309 5.66E-18 T 11-11-2016 Gferi_RS09700 620584dbcb17cb0e2718a2abc11cdc37 338 Gene3D G3DSA:3.40.190.10 269 309 7.2E-4 T 11-11-2016 Gferi_RS09700 620584dbcb17cb0e2718a2abc11cdc37 338 PIRSF PIRSF017082 6 337 5.9E-74 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS09700 620584dbcb17cb0e2718a2abc11cdc37 338 Gene3D G3DSA:3.40.190.10 144 242 2.8E-7 T 11-11-2016 Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 SUPERFAMILY SSF52540 1 214 5.15E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 SUPERFAMILY SSF52540 1085 1171 5.15E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 Gene3D G3DSA:3.40.50.300 1048 1187 1.6E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 Gene3D G3DSA:3.40.50.300 846 847 1.6E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 Gene3D G3DSA:3.40.50.300 2 163 1.6E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 136 3.0E-37 T 11-11-2016 IPR003395 RecF/RecN/SMC, N-terminal Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 Pfam PF02463 RecF/RecN/SMC N terminal domain 713 1179 4.6E-30 T 11-11-2016 IPR003395 RecF/RecN/SMC, N-terminal Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 SMART SM00968 525 645 1.7E-33 T 11-11-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1188 23.607 T 11-11-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1186 0.0 T 11-11-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 PIRSF PIRSF005719 1 1191 0.0 T 11-11-2016 IPR024704 Structural maintenance of chromosomes protein Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 Pfam PF06470 SMC proteins Flexible Hinge Domain 525 641 1.1E-28 T 11-11-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Gferi_RS01540 8feabeb4c517b9cdc6a1eb4eb9cb4240 1191 SUPERFAMILY SSF75553 483 694 3.14E-49 T 11-11-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 Gene3D G3DSA:3.30.450.20 34 167 2.7E-37 T 11-11-2016 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 Gene3D G3DSA:1.10.287.130 311 371 1.1E-24 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 486 4.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 472 4.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 506 4.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 525 4.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 Pfam PF17203 Single cache domain 3 37 166 6.8E-17 T 11-11-2016 IPR033463 Single cache domain 3 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 SUPERFAMILY SSF55785 210 310 2.27E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 420 526 1.7E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 320 367 4.0E-16 T 11-11-2016 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 SUPERFAMILY SSF103190 39 168 3.14E-31 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 SMART SM00387 417 528 2.1E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 SUPERFAMILY SSF55890 322 381 3.79E-16 T 11-11-2016 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 SUPERFAMILY SSF55874 385 525 1.44E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 Gene3D G3DSA:3.30.450.20 218 310 3.3E-9 T 11-11-2016 Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 Gene3D G3DSA:3.30.565.10 392 525 7.4E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05680 3c5d128a7a3c8c942f52ef7bd9a13752 533 Pfam PF13596 PAS domain 218 313 1.2E-5 T 11-11-2016 Gferi_RS06230 c35a87ce644d6c89fbb98033d78ac466 245 Gene3D G3DSA:3.40.50.300 1 240 6.2E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06230 c35a87ce644d6c89fbb98033d78ac466 245 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS06230 c35a87ce644d6c89fbb98033d78ac466 245 SUPERFAMILY SSF52540 1 238 9.29E-77 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06230 c35a87ce644d6c89fbb98033d78ac466 245 SMART SM00382 26 216 4.3E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06230 c35a87ce644d6c89fbb98033d78ac466 245 Pfam PF00005 ABC transporter 17 168 3.4E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06230 c35a87ce644d6c89fbb98033d78ac466 245 PIRSF PIRSF039085 1 244 4.1E-112 T 11-11-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 44 511 8.4E-181 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 Pfam PF01434 Peptidase family M41 319 509 3.4E-63 T 11-11-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 512 31.477 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 SUPERFAMILY SSF140990 339 514 7.06E-61 T 11-11-2016 Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 Gene3D G3DSA:1.10.8.60 267 332 6.5E-25 T 11-11-2016 Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 ProSitePatterns PS00674 AAA-protein family signature. 227 245 - T 11-11-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 127 256 3.9E-46 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 Gene3D G3DSA:3.40.50.300 86 266 1.1E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 SUPERFAMILY SSF52540 86 328 2.34E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04130 64daf98b1c6b020e7e44e93a24f61194 522 SMART SM00382 123 259 1.2E-23 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS03370 97cfa453957e20d526990fc83ed6480f 529 Pfam PF03313 Serine dehydratase alpha chain 252 510 2.5E-60 T 11-11-2016 IPR005130 Serine dehydratase-like, alpha subunit Gferi_RS03370 97cfa453957e20d526990fc83ed6480f 529 Pfam PF03315 Serine dehydratase beta chain 16 103 1.3E-6 T 11-11-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Gferi_RS03370 97cfa453957e20d526990fc83ed6480f 529 Gene3D G3DSA:3.30.1330.90 16 140 4.4E-17 T 11-11-2016 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Gferi_RS03370 97cfa453957e20d526990fc83ed6480f 529 SUPERFAMILY SSF143548 22 141 7.98E-16 T 11-11-2016 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Gferi_RS16795 e8732ffc60df3b4767c5a6532d8ad322 102 Pfam PF04977 Septum formation initiator 20 97 5.8E-18 T 11-11-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 5 339 1.4E-152 T 11-11-2016 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 Gene3D G3DSA:3.40.50.10370 368 460 1.7E-37 T 11-11-2016 IPR029503 Phosphotransferase system EIIB component, mannitol-specific GO:0009401|GO:0022872 Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 Pfam PF02378 Phosphotransferase system, EIIC 14 272 3.4E-16 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 478 615 2.0E-31 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 371 453 2.0E-13 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 522 538 - T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 SUPERFAMILY SSF52794 369 457 2.62E-23 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 SUPERFAMILY SSF55804 479 615 1.44E-35 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS19710 4817b31c39fa1a823c3d3ddb834f9f30 616 Gene3D G3DSA:3.40.930.10 478 615 6.0E-36 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS17605 7cad3401ef16cc7aa75108db0d51023c 618 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 23 98 3.2E-12 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS17605 7cad3401ef16cc7aa75108db0d51023c 618 SUPERFAMILY SSF53067 213 314 1.68E-6 T 11-11-2016 Gferi_RS17605 7cad3401ef16cc7aa75108db0d51023c 618 SUPERFAMILY SSF53067 470 535 1.68E-6 T 11-11-2016 Gferi_RS17605 7cad3401ef16cc7aa75108db0d51023c 618 SUPERFAMILY SSF53067 358 441 1.68E-6 T 11-11-2016 Gferi_RS17605 7cad3401ef16cc7aa75108db0d51023c 618 Pfam PF14574 Domain of unknown function (DUF4445) 213 607 5.5E-139 T 11-11-2016 IPR027980 Protein of unknown function DUF4445 Gferi_RS17605 7cad3401ef16cc7aa75108db0d51023c 618 SUPERFAMILY SSF54292 18 105 6.82E-22 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS17605 7cad3401ef16cc7aa75108db0d51023c 618 Gene3D G3DSA:3.10.20.30 19 103 3.3E-22 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS24175 8e2d80bc645e5a97f00f2b7f1a615c85 231 Pfam PF09986 Uncharacterized protein conserved in bacteria (DUF2225) 5 216 2.0E-67 T 11-11-2016 IPR018708 Protein of unknown function DUF2225 Gferi_RS24175 8e2d80bc645e5a97f00f2b7f1a615c85 231 Gene3D G3DSA:1.25.40.10 145 196 3.8E-4 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS00150 36578dbd133ae372d44f64f714bd2be6 283 Gene3D G3DSA:3.40.800.10 12 282 5.6E-78 T 11-11-2016 IPR023696 Ureohydrolase domain Gferi_RS00150 36578dbd133ae372d44f64f714bd2be6 283 SUPERFAMILY SSF52768 9 281 3.96E-79 T 11-11-2016 Gferi_RS00150 36578dbd133ae372d44f64f714bd2be6 283 Pfam PF00491 Arginase family 20 280 5.8E-76 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS00150 36578dbd133ae372d44f64f714bd2be6 283 TIGRFAM TIGR01230 agmatinase: agmatinase 9 281 3.9E-90 T 11-11-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 Gferi_RS00150 36578dbd133ae372d44f64f714bd2be6 283 ProSitePatterns PS01053 Arginase family signature. 211 232 - T 11-11-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Gferi_RS00150 36578dbd133ae372d44f64f714bd2be6 283 PIRSF PIRSF036979 1 283 1.1E-94 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS00845 4fb95ed2271884e2b4bd7ef343419620 152 Gene3D G3DSA:2.40.50.180 49 85 2.6E-13 T 11-11-2016 Gferi_RS00845 4fb95ed2271884e2b4bd7ef343419620 152 SMART SM00260 7 144 1.5E-39 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS00845 4fb95ed2271884e2b4bd7ef343419620 152 SUPERFAMILY SSF50341 9 145 8.5E-38 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS00845 4fb95ed2271884e2b4bd7ef343419620 152 Pfam PF01584 CheW-like domain 11 145 1.4E-35 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS00845 4fb95ed2271884e2b4bd7ef343419620 152 Gene3D G3DSA:2.30.30.40 86 138 1.8E-12 T 11-11-2016 Gferi_RS15225 1327a6624ac057cb2e714397f3b34578 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 119 1.7E-15 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Gferi_RS15225 1327a6624ac057cb2e714397f3b34578 124 Gene3D G3DSA:3.10.180.10 1 121 7.9E-28 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS15225 1327a6624ac057cb2e714397f3b34578 124 SUPERFAMILY SSF54593 1 122 1.25E-28 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS01000 61e93e8cc5bdae2aefe0a22f270bfc76 135 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 9 132 1.1E-32 T 11-11-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Gferi_RS01000 61e93e8cc5bdae2aefe0a22f270bfc76 135 Pfam PF00460 Flagella basal body rod protein 24 39 9.9E-7 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Gferi_RS01000 61e93e8cc5bdae2aefe0a22f270bfc76 135 PIRSF PIRSF002889 1 134 8.1E-35 T 11-11-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 Gferi_RS01000 61e93e8cc5bdae2aefe0a22f270bfc76 135 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 11-11-2016 IPR019776 Flagellar basal body rod protein, conserved site Gferi_RS11210 28ee3f6e6299c61f4e2bb08056a1a51c 207 Hamap MF_00271 V-type ATP synthase subunit D [atpD]. 2 206 21.146 T 11-11-2016 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11210 28ee3f6e6299c61f4e2bb08056a1a51c 207 Pfam PF01813 ATP synthase subunit D 11 201 2.4E-49 T 11-11-2016 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11210 28ee3f6e6299c61f4e2bb08056a1a51c 207 TIGRFAM TIGR00309 V_ATPase_subD: V-type ATPase, D subunit 4 205 1.1E-42 T 11-11-2016 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS19715 7290cec9f6118d41f60a136b2bd4da82 311 SUPERFAMILY SSF53613 1 293 7.48E-70 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS19715 7290cec9f6118d41f60a136b2bd4da82 311 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 307 1.5E-101 T 11-11-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Gferi_RS19715 7290cec9f6118d41f60a136b2bd4da82 311 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 247 260 - T 11-11-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Gferi_RS19715 7290cec9f6118d41f60a136b2bd4da82 311 PIRSF PIRSF000535 1 309 5.7E-87 T 11-11-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Gferi_RS19715 7290cec9f6118d41f60a136b2bd4da82 311 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 307 5.2E-100 T 11-11-2016 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 Gferi_RS19715 7290cec9f6118d41f60a136b2bd4da82 311 Gene3D G3DSA:3.40.1190.20 33 309 2.0E-79 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS19715 7290cec9f6118d41f60a136b2bd4da82 311 Pfam PF00294 pfkB family carbohydrate kinase 18 290 5.8E-54 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS06630 b92d4d1b686ebf048f03597acc9444a7 250 SUPERFAMILY SSF52540 4 224 7.88E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06630 b92d4d1b686ebf048f03597acc9444a7 250 Pfam PF00005 ABC transporter 20 169 2.9E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06630 b92d4d1b686ebf048f03597acc9444a7 250 SMART SM00382 29 219 1.1E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06630 b92d4d1b686ebf048f03597acc9444a7 250 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS06630 b92d4d1b686ebf048f03597acc9444a7 250 Gene3D G3DSA:3.40.50.300 3 222 1.7E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05825 f2b688976de57f0b98a94ce56711dfbf 142 SUPERFAMILY SSF47240 16 140 1.42E-28 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS05825 f2b688976de57f0b98a94ce56711dfbf 142 Pfam PF02915 Rubrerythrin 23 135 1.7E-11 T 11-11-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Gferi_RS05825 f2b688976de57f0b98a94ce56711dfbf 142 Gene3D G3DSA:1.20.1260.10 14 140 3.2E-31 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS00180 76693fae6003cfd4779886dfabb15ae4 294 SUPERFAMILY SSF56349 6 288 8.83E-54 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS00180 76693fae6003cfd4779886dfabb15ae4 294 Gene3D G3DSA:1.10.150.130 3 97 5.8E-26 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal Gferi_RS00180 76693fae6003cfd4779886dfabb15ae4 294 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 7 294 1.0E-111 T 11-11-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 Gferi_RS00180 76693fae6003cfd4779886dfabb15ae4 294 Gene3D G3DSA:1.10.443.10 110 288 8.9E-53 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS00180 76693fae6003cfd4779886dfabb15ae4 294 Pfam PF00589 Phage integrase family 110 280 1.8E-45 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS00180 76693fae6003cfd4779886dfabb15ae4 294 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 88 2.2E-17 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Gferi_RS00180 76693fae6003cfd4779886dfabb15ae4 294 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 294 54.345 T 11-11-2016 IPR023009 Tyrosine recombinase XerC/XerD Gferi_RS14495 79f9b0d0294c79a29c334909c36caef2 200 SUPERFAMILY SSF109998 32 149 1.41E-21 T 11-11-2016 IPR027304 Trigger factor/SurA domain Gferi_RS14495 79f9b0d0294c79a29c334909c36caef2 200 Pfam PF13624 SurA N-terminal domain 54 129 1.8E-6 T 11-11-2016 Gferi_RS22685 1c2007dec96813e650e46a56da996bd2 224 SUPERFAMILY SSF52540 1 217 1.98E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22685 1c2007dec96813e650e46a56da996bd2 224 Gene3D G3DSA:3.40.50.300 1 218 2.6E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22685 1c2007dec96813e650e46a56da996bd2 224 Pfam PF00005 ABC transporter 18 165 6.8E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22685 1c2007dec96813e650e46a56da996bd2 224 SMART SM00382 27 215 6.3E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08890 4a74acb2d9fb0feba2507cb8aba3d061 495 SUPERFAMILY SSF55486 273 493 3.63E-31 T 11-11-2016 Gferi_RS08890 4a74acb2d9fb0feba2507cb8aba3d061 495 Gene3D G3DSA:1.10.390.10 364 493 3.3E-4 T 11-11-2016 Gferi_RS08890 4a74acb2d9fb0feba2507cb8aba3d061 495 Pfam PF01433 Peptidase family M1 158 381 5.0E-15 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Gferi_RS00890 ef1474b4510ca83e11f766206119a619 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 1.3E-31 T 11-11-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 Gferi_RS00890 ef1474b4510ca83e11f766206119a619 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.9E-22 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Gferi_RS00890 ef1474b4510ca83e11f766206119a619 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.9E-22 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Gferi_RS00890 ef1474b4510ca83e11f766206119a619 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.9E-22 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Gferi_RS00890 ef1474b4510ca83e11f766206119a619 89 PIRSF PIRSF004669 1 89 1.3E-32 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Gferi_RS00890 ef1474b4510ca83e11f766206119a619 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.0E-29 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 Gene3D G3DSA:3.90.226.10 4 193 1.9E-90 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 44.63 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 2 191 4.3E-105 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 Pfam PF00574 Clp protease 13 192 1.2E-89 T 11-11-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 11-11-2016 IPR018215 ClpP, Ser active site Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 2.8E-53 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 2.8E-53 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 2.8E-53 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 2.8E-53 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 2.8E-53 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 SUPERFAMILY SSF52096 10 193 1.04E-74 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS09275 0e9ec1c57afa4450b3a11df6cc603ccf 194 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 11-11-2016 IPR033135 ClpP, histidine active site Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 SMART SM00345 20 79 1.0E-13 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 Gene3D G3DSA:3.90.1150.10 362 476 1.5E-9 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 Gene3D G3DSA:1.10.10.10 7 79 2.0E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 Gene3D G3DSA:3.40.640.10 154 361 8.0E-65 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 9.6E-8 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 9.6E-8 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 SUPERFAMILY SSF46785 9 90 3.66E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 Pfam PF00155 Aminotransferase class I and II 123 468 1.4E-34 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 79 2.1E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS21300 781a77b471cb3a05914220ebcd76e44e 483 SUPERFAMILY SSF53383 93 478 7.0E-89 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS07155 afea6e3c7a7f7ed29492f1cb96dfc7a0 252 SUPERFAMILY SSF55781 74 248 2.42E-33 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS07155 afea6e3c7a7f7ed29492f1cb96dfc7a0 252 Pfam PF01614 Bacterial transcriptional regulator 133 247 1.8E-26 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS07155 afea6e3c7a7f7ed29492f1cb96dfc7a0 252 Pfam PF09339 IclR helix-turn-helix domain 10 59 1.5E-11 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS07155 afea6e3c7a7f7ed29492f1cb96dfc7a0 252 SMART SM00346 7 96 2.0E-15 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS07155 afea6e3c7a7f7ed29492f1cb96dfc7a0 252 Gene3D G3DSA:1.10.10.10 7 77 2.4E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07155 afea6e3c7a7f7ed29492f1cb96dfc7a0 252 SUPERFAMILY SSF46785 9 80 3.99E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07155 afea6e3c7a7f7ed29492f1cb96dfc7a0 252 Gene3D G3DSA:3.30.450.40 78 250 4.7E-38 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS08880 ed9d51f87b370276c978f62eea7bb437 204 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 4 202 3.8E-64 T 11-11-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Gferi_RS08880 ed9d51f87b370276c978f62eea7bb437 204 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 6 202 34.217 T 11-11-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Gferi_RS08880 ed9d51f87b370276c978f62eea7bb437 204 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 7 198 5.5E-63 T 11-11-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Gferi_RS08880 ed9d51f87b370276c978f62eea7bb437 204 SUPERFAMILY SSF50486 2 203 1.73E-67 T 11-11-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 Gferi_RS08880 ed9d51f87b370276c978f62eea7bb437 204 Gene3D G3DSA:3.10.300.10 2 203 6.6E-76 T 11-11-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Gferi_RS19600 19d136124e749019e69db8a0bcf26698 238 Gene3D G3DSA:3.10.580.10 95 234 9.6E-7 T 11-11-2016 Gferi_RS19600 19d136124e749019e69db8a0bcf26698 238 SUPERFAMILY SSF54631 87 235 5.63E-11 T 11-11-2016 Gferi_RS19600 19d136124e749019e69db8a0bcf26698 238 Pfam PF00571 CBS domain 98 143 0.0015 T 11-11-2016 IPR000644 CBS domain Gferi_RS16315 f5031395622eac031c3d0be76bc3825d 112 Gene3D G3DSA:1.10.10.10 3 110 3.0E-43 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16315 f5031395622eac031c3d0be76bc3825d 112 SUPERFAMILY SSF46785 7 107 1.51E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16315 f5031395622eac031c3d0be76bc3825d 112 Pfam PF01638 HxlR-like helix-turn-helix 20 107 6.8E-33 T 11-11-2016 IPR002577 Helix-turn-helix, HxlR type Gferi_RS02030 ef6efaf843601745b9dcfd5d56fcc530 214 Pfam PF02096 60Kd inner membrane protein 22 202 1.1E-32 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Gferi_RS02030 ef6efaf843601745b9dcfd5d56fcc530 214 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 22 203 9.8E-33 T 11-11-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Gferi_RS00140 ae0cc9ba278f68b8fb9271adefaf7777 179 SUPERFAMILY SSF51182 54 179 2.07E-28 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS00140 ae0cc9ba278f68b8fb9271adefaf7777 179 SUPERFAMILY SSF47413 1 65 7.6E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS00140 ae0cc9ba278f68b8fb9271adefaf7777 179 Gene3D G3DSA:1.10.260.40 1 54 3.7E-21 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS00140 ae0cc9ba278f68b8fb9271adefaf7777 179 Pfam PF07883 Cupin domain 105 173 2.8E-17 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS00140 ae0cc9ba278f68b8fb9271adefaf7777 179 Pfam PF01381 Helix-turn-helix 7 58 1.9E-12 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS00140 ae0cc9ba278f68b8fb9271adefaf7777 179 Gene3D G3DSA:2.60.120.10 55 178 3.8E-29 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS00140 ae0cc9ba278f68b8fb9271adefaf7777 179 SMART SM00530 6 61 1.4E-11 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS15290 71a9393d201b4e23b0f13913bf89175a 169 Gene3D G3DSA:1.20.1260.10 12 156 2.3E-8 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS15290 71a9393d201b4e23b0f13913bf89175a 169 SUPERFAMILY SSF47240 9 163 2.44E-20 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS15290 71a9393d201b4e23b0f13913bf89175a 169 Pfam PF07875 Coat F domain 107 169 2.6E-23 T 11-11-2016 IPR012851 Spore coat protein CotF-like Gferi_RS10465 26e3ab06b696819f8a0a923b4e8057cb 244 PIRSF PIRSF038953 6 241 1.7E-60 T 11-11-2016 IPR014244 RNA polymerase sigma-I type Gferi_RS10465 26e3ab06b696819f8a0a923b4e8057cb 244 Pfam PF04542 Sigma-70 region 2 31 100 1.3E-4 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10465 26e3ab06b696819f8a0a923b4e8057cb 244 SUPERFAMILY SSF88946 18 99 3.14E-16 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10465 26e3ab06b696819f8a0a923b4e8057cb 244 Gene3D G3DSA:1.10.1740.10 17 122 4.0E-5 T 11-11-2016 Gferi_RS10465 26e3ab06b696819f8a0a923b4e8057cb 244 TIGRFAM TIGR02895 spore_sigI: RNA polymerase sigma-I factor 19 233 1.5E-57 T 11-11-2016 IPR014244 RNA polymerase sigma-I type Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.0E-13 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.0E-13 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.0E-13 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 SMART SM00344 1 108 2.5E-40 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 SUPERFAMILY SSF54909 63 143 1.01E-20 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 Gene3D G3DSA:1.10.10.10 1 52 3.0E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 2.0E-15 T 11-11-2016 Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 SUPERFAMILY SSF46785 1 61 6.92E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 Gene3D G3DSA:3.30.70.920 54 144 3.2E-27 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS02580 bb37e63e07bc81527c9b8735b1d96a43 146 Pfam PF01037 Lrp/AsnC ligand binding domain 69 138 1.8E-19 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 SMART SM00387 370 482 3.2E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 SUPERFAMILY SSF55874 313 479 9.17E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 480 1.2E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 Gene3D G3DSA:1.10.287.130 249 309 1.4E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 Gene3D G3DSA:3.30.565.10 310 479 4.5E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 466 479 1.8E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 435 1.8E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 421 1.8E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 460 1.8E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 Pfam PF00672 HAMP domain 185 252 9.8E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 SUPERFAMILY SSF47384 240 324 3.14E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 SUPERFAMILY SSF158472 206 253 2.22E-9 T 11-11-2016 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 324 1.8E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 SMART SM00388 257 324 2.3E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 SMART SM00304 204 256 6.6E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS09155 a22e076a00f5880d2f345f5a68d55c4d 484 Gene3D G3DSA:3.30.450.40 48 168 4.2E-4 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 SUPERFAMILY SSF52540 17 229 8.17E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 SMART SM00382 285 470 2.9E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 SMART SM00382 31 222 4.4E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 SUPERFAMILY SSF52540 258 484 4.69E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 Gene3D G3DSA:3.40.50.300 13 230 2.4E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 Gene3D G3DSA:3.40.50.300 259 485 3.9E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 Pfam PF00005 ABC transporter 276 422 5.5E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22375 20158f67fb4550e86c09ee020f346b42 511 Pfam PF00005 ABC transporter 22 171 4.2E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22790 9cdb2416e1b01593ff0957d3f69d4f57 265 SUPERFAMILY SSF63992 1 264 3.27E-81 T 11-11-2016 IPR007035 Peptidase M55, D-aminopeptidase Gferi_RS22790 9cdb2416e1b01593ff0957d3f69d4f57 265 Gene3D G3DSA:3.30.1360.130 213 261 2.3E-8 T 11-11-2016 Gferi_RS22790 9cdb2416e1b01593ff0957d3f69d4f57 265 Gene3D G3DSA:3.40.50.10780 1 206 1.1E-65 T 11-11-2016 IPR027476 D-aminopeptidase, N-terminal Gferi_RS22790 9cdb2416e1b01593ff0957d3f69d4f57 265 PIRSF PIRSF015853 1 265 1.2E-81 T 11-11-2016 IPR007035 Peptidase M55, D-aminopeptidase Gferi_RS22790 9cdb2416e1b01593ff0957d3f69d4f57 265 Pfam PF04951 D-aminopeptidase 1 262 1.5E-93 T 11-11-2016 IPR007035 Peptidase M55, D-aminopeptidase Gferi_RS07645 40c1382093007b3676fbdb2e9a22ba13 123 Gene3D G3DSA:3.40.50.720 1 118 6.8E-13 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS07645 40c1382093007b3676fbdb2e9a22ba13 123 Pfam PF02254 TrkA-N domain 20 118 9.0E-12 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Gferi_RS07645 40c1382093007b3676fbdb2e9a22ba13 123 SUPERFAMILY SSF51735 3 120 2.7E-11 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05160 5175f3144b1900964b6c95494598183d 408 Gene3D G3DSA:3.40.50.1100 122 402 2.3E-36 T 11-11-2016 Gferi_RS05160 5175f3144b1900964b6c95494598183d 408 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 44 387 3.7E-52 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS05160 5175f3144b1900964b6c95494598183d 408 TIGRFAM TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family 28 402 9.1E-180 T 11-11-2016 IPR010081 Diaminopropionate ammonia-lyase GO:0008838|GO:0030170 Gferi_RS05160 5175f3144b1900964b6c95494598183d 408 TIGRFAM TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase 7 403 7.7E-197 T 11-11-2016 IPR019871 Diaminopropionate ammonia-lyase, subgroup GO:0008838 Gferi_RS05160 5175f3144b1900964b6c95494598183d 408 SUPERFAMILY SSF53686 36 363 7.07E-59 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS18850 2e3b43e47d7c4ebc215f40fc0afdd67f 107 Gene3D G3DSA:1.10.10.10 2 103 1.4E-32 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18850 2e3b43e47d7c4ebc215f40fc0afdd67f 107 SUPERFAMILY SSF46785 10 97 9.25E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18850 2e3b43e47d7c4ebc215f40fc0afdd67f 107 Pfam PF03551 Transcriptional regulator PadR-like family 14 80 2.9E-21 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS10695 9897a841a580c7e25a90c70bdbc0bc07 176 Gene3D G3DSA:3.30.160.100 1 94 1.3E-32 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 Gferi_RS10695 9897a841a580c7e25a90c70bdbc0bc07 176 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 7.4E-27 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 Gferi_RS10695 9897a841a580c7e25a90c70bdbc0bc07 176 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 116 171 9.6E-31 T 11-11-2016 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal Gferi_RS10695 9897a841a580c7e25a90c70bdbc0bc07 176 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 2.7E-28 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 Gferi_RS10695 9897a841a580c7e25a90c70bdbc0bc07 176 SUPERFAMILY SSF69754 2 101 4.97E-31 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 Gferi_RS09725 84b239924dab86594ebe2f6ce12e0984 315 SUPERFAMILY SSF48179 189 287 8.33E-18 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS09725 84b239924dab86594ebe2f6ce12e0984 315 PIRSF PIRSF000105 1 314 2.0E-73 T 11-11-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 Gferi_RS09725 84b239924dab86594ebe2f6ce12e0984 315 SUPERFAMILY SSF51735 1 186 2.24E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09725 84b239924dab86594ebe2f6ce12e0984 315 Gene3D G3DSA:1.10.1040.10 191 287 2.4E-16 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS09725 84b239924dab86594ebe2f6ce12e0984 315 Gene3D G3DSA:3.40.50.720 2 190 1.4E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09725 84b239924dab86594ebe2f6ce12e0984 315 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 4 186 1.0E-49 T 11-11-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS09725 84b239924dab86594ebe2f6ce12e0984 315 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 189 287 2.4E-14 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS11430 dfeb3d15bd48067363a6fddc43db29d1 761 Pfam PF07833 Copper amine oxidase N-terminal domain 665 759 2.6E-29 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11430 dfeb3d15bd48067363a6fddc43db29d1 761 Pfam PF07833 Copper amine oxidase N-terminal domain 632 681 3.3E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11430 dfeb3d15bd48067363a6fddc43db29d1 761 SUPERFAMILY SSF55383 685 754 3.66E-19 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11430 dfeb3d15bd48067363a6fddc43db29d1 761 Gene3D G3DSA:3.30.457.10 633 675 1.7E-5 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11430 dfeb3d15bd48067363a6fddc43db29d1 761 Gene3D G3DSA:3.30.457.10 742 761 4.9E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11430 dfeb3d15bd48067363a6fddc43db29d1 761 Gene3D G3DSA:3.30.457.10 676 741 6.5E-21 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 SUPERFAMILY SSF52540 31 226 1.17E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 Gene3D G3DSA:3.40.50.300 15 166 1.5E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 SMART SM00382 37 179 2.7E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.6E-46 T 11-11-2016 Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 359 4.7E-147 T 11-11-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 SUPERFAMILY SSF48019 243 361 1.45E-22 T 11-11-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 Gene3D G3DSA:1.10.8.60 167 242 1.3E-32 T 11-11-2016 Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 360 1.2E-15 T 11-11-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 Gferi_RS12325 5b134958fdb167f2eb8e493401f4a8b8 548 Gene3D G3DSA:1.20.272.10 243 360 9.0E-15 T 11-11-2016 Gferi_RS27185 2d4d8223b852f1f41cceb9c557acdb89 101 Gene3D G3DSA:3.10.350.10 52 99 1.7E-10 T 11-11-2016 IPR018392 LysM domain Gferi_RS27185 2d4d8223b852f1f41cceb9c557acdb89 101 SUPERFAMILY SSF54106 51 99 3.92E-7 T 11-11-2016 IPR018392 LysM domain Gferi_RS27185 2d4d8223b852f1f41cceb9c557acdb89 101 SMART SM00257 49 99 3.0E-4 T 11-11-2016 IPR018392 LysM domain Gferi_RS27185 2d4d8223b852f1f41cceb9c557acdb89 101 Pfam PF01476 LysM domain 52 99 4.0E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS07980 efd55735aa5c8ddb761cf880d3645e97 120 Pfam PF03965 Penicillinase repressor 6 116 1.5E-19 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS07980 efd55735aa5c8ddb761cf880d3645e97 120 PIRSF PIRSF019455 1 120 3.6E-20 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS07980 efd55735aa5c8ddb761cf880d3645e97 120 Gene3D G3DSA:1.10.10.10 1 75 9.5E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07980 efd55735aa5c8ddb761cf880d3645e97 120 SUPERFAMILY SSF46785 4 118 2.12E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20460 c7fade47f692f5b986b72b0e3d28e2e9 139 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 120 6.8E-31 T 11-11-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 Gferi_RS20460 c7fade47f692f5b986b72b0e3d28e2e9 139 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 120 7.2E-31 T 11-11-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 Gferi_RS20460 c7fade47f692f5b986b72b0e3d28e2e9 139 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 96 2.0E-21 T 11-11-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 Gferi_RS20460 c7fade47f692f5b986b72b0e3d28e2e9 139 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 123 23.569 T 11-11-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 Gferi_RS20460 c7fade47f692f5b986b72b0e3d28e2e9 139 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 118 1.0E-21 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 Gferi_RS20460 c7fade47f692f5b986b72b0e3d28e2e9 139 SUPERFAMILY SSF56214 1 120 1.2E-30 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 Gferi_RS20460 c7fade47f692f5b986b72b0e3d28e2e9 139 Gene3D G3DSA:3.90.470.20 1 121 1.0E-38 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 Gferi_RS08295 2d523d45edbad2a166cc35c9db11c4f1 227 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS08295 2d523d45edbad2a166cc35c9db11c4f1 227 SMART SM00382 32 218 1.8E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08295 2d523d45edbad2a166cc35c9db11c4f1 227 Gene3D G3DSA:3.40.50.300 2 222 3.8E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08295 2d523d45edbad2a166cc35c9db11c4f1 227 SUPERFAMILY SSF52540 4 223 1.98E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08295 2d523d45edbad2a166cc35c9db11c4f1 227 Pfam PF00005 ABC transporter 23 169 4.3E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS13215 35e1d422517d2eca0107c40016d30347 150 SUPERFAMILY SSF55874 45 143 2.1E-14 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13215 35e1d422517d2eca0107c40016d30347 150 Gene3D G3DSA:3.30.565.10 27 145 1.2E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13215 35e1d422517d2eca0107c40016d30347 150 Pfam PF13581 Histidine kinase-like ATPase domain 23 144 2.1E-30 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17985 18ba96c0ae4577cc9207905a758d06a9 212 Pfam PF04324 BFD-like [2Fe-2S] binding domain 96 145 8.4E-7 T 11-11-2016 IPR007419 BFD-like [2Fe-2S]-binding domain Gferi_RS17985 18ba96c0ae4577cc9207905a758d06a9 212 SUPERFAMILY SSF54862 5 67 3.35E-16 T 11-11-2016 Gferi_RS17985 18ba96c0ae4577cc9207905a758d06a9 212 Pfam PF00037 4Fe-4S binding domain 9 31 7.1E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS17985 18ba96c0ae4577cc9207905a758d06a9 212 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 15 26 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS17985 18ba96c0ae4577cc9207905a758d06a9 212 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 44 55 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS17985 18ba96c0ae4577cc9207905a758d06a9 212 Gene3D G3DSA:3.30.70.20 9 66 1.6E-14 T 11-11-2016 Gferi_RS04785 84d3d5e7919aac25d119c20dd469cc89 169 SUPERFAMILY SSF55144 6 153 5.49E-15 T 11-11-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase Gferi_RS04785 84d3d5e7919aac25d119c20dd469cc89 169 Gene3D G3DSA:3.90.1140.10 15 120 3.0E-7 T 11-11-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase Gferi_RS04785 84d3d5e7919aac25d119c20dd469cc89 169 Pfam PF13563 2'-5' RNA ligase superfamily 17 152 5.5E-17 T 11-11-2016 Gferi_RS26020 bfbe69fe662d768d146851f51903c646 258 SUPERFAMILY SSF143414 173 244 3.14E-13 T 11-11-2016 Gferi_RS26020 bfbe69fe662d768d146851f51903c646 258 SUPERFAMILY SSF143414 67 145 4.32E-9 T 11-11-2016 Gferi_RS26020 bfbe69fe662d768d146851f51903c646 258 TIGRFAM TIGR04501 microcomp_PduB: microcompartment protein PduB 34 258 1.6E-121 T 11-11-2016 IPR030984 Microcompartment protein PduB GO:0005198 Gferi_RS26020 bfbe69fe662d768d146851f51903c646 258 PIRSF PIRSF012290 9 258 5.4E-98 T 11-11-2016 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0009605 Gferi_RS26020 bfbe69fe662d768d146851f51903c646 258 Pfam PF00936 BMC domain 174 242 1.1E-15 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26020 bfbe69fe662d768d146851f51903c646 258 Pfam PF00936 BMC domain 68 137 2.9E-10 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26020 bfbe69fe662d768d146851f51903c646 258 SMART SM00877 173 251 1.7E-15 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26020 bfbe69fe662d768d146851f51903c646 258 SMART SM00877 67 149 2.8E-10 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 9.7E-18 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 SMART SM01134 73 235 4.6E-49 T 11-11-2016 Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 SMART SM00420 6 58 5.8E-16 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 SUPERFAMILY SSF100950 73 234 1.53E-27 T 11-11-2016 Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 Gene3D G3DSA:3.40.50.1360 75 225 1.9E-9 T 11-11-2016 Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-11-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 Gene3D G3DSA:1.10.10.10 5 58 1.2E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 Pfam PF00455 DeoR C terminal sensor domain 75 234 1.7E-41 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 2.4E-9 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 2.4E-9 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS24840 1e91d8679d327bdefe95cb8fc1571925 259 SUPERFAMILY SSF46785 4 73 5.41E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21850 249272831803faf016ebbf2e39fd7857 293 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 22 68 2.2E-8 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Gferi_RS21850 249272831803faf016ebbf2e39fd7857 293 Gene3D G3DSA:1.10.3720.10 84 289 1.6E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS21850 249272831803faf016ebbf2e39fd7857 293 SUPERFAMILY SSF161098 95 272 3.27E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS21850 249272831803faf016ebbf2e39fd7857 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 290 1.1E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 SUPERFAMILY SSF118215 8 407 1.44E-123 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 PRINTS PR00173 Glutamate-aspartate symporter signature 84 109 2.7E-56 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 PRINTS PR00173 Glutamate-aspartate symporter signature 196 215 2.7E-56 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 PRINTS PR00173 Glutamate-aspartate symporter signature 298 324 2.7E-56 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 PRINTS PR00173 Glutamate-aspartate symporter signature 231 250 2.7E-56 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 PRINTS PR00173 Glutamate-aspartate symporter signature 360 380 2.7E-56 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 2.7E-56 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 PRINTS PR00173 Glutamate-aspartate symporter signature 54 74 2.7E-56 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 PRINTS PR00173 Glutamate-aspartate symporter signature 333 352 2.7E-56 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 Gene3D G3DSA:1.10.3860.10 3 411 7.7E-137 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05640 c52b3bef4bac21c03e9bea4d4c45fbef 425 Pfam PF00375 Sodium:dicarboxylate symporter family 8 405 3.7E-133 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS26770 418c9a4080983d18961a35e33c0b4e02 354 Gene3D G3DSA:3.20.20.10 11 220 6.8E-13 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS26770 418c9a4080983d18961a35e33c0b4e02 354 Pfam PF01168 Alanine racemase, N-terminal domain 9 224 2.9E-15 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS26770 418c9a4080983d18961a35e33c0b4e02 354 SUPERFAMILY SSF51419 9 228 2.71E-23 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 248 4.2E-52 T 11-11-2016 Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.8E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.8E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.8E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 Gene3D G3DSA:3.40.50.720 4 249 6.0E-74 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.6E-38 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.6E-38 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.6E-38 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 3.6E-38 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 3.6E-38 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.6E-38 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS04615 3f5eb55f1367b5505672e27766bd2564 251 SUPERFAMILY SSF51735 7 250 7.11E-71 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 Gene3D G3DSA:3.50.50.60 4 189 2.3E-49 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 Gene3D G3DSA:3.50.50.60 353 405 2.3E-49 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 3.1E-6 T 11-11-2016 Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 167 3.1E-6 T 11-11-2016 Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 SUPERFAMILY SSF51905 351 407 6.96E-54 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 SUPERFAMILY SSF51905 3 191 6.96E-54 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 Gene3D G3DSA:2.40.30.10 191 286 4.8E-24 T 11-11-2016 Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 Gene3D G3DSA:1.10.8.260 288 335 9.8E-7 T 11-11-2016 IPR023166 HI0933 insert-like domain Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 SUPERFAMILY SSF160996 192 354 2.22E-46 T 11-11-2016 Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 4 405 5.0E-143 T 11-11-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like Gferi_RS00040 fe24abbbe65b933f114e804c7607a95a 408 Pfam PF03486 HI0933-like protein 3 405 8.8E-141 T 11-11-2016 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 SUPERFAMILY SSF52935 322 473 3.53E-41 T 11-11-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 Gene3D G3DSA:2.40.33.10 73 167 3.2E-32 T 11-11-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 ProSitePatterns PS00110 Pyruvate kinase active site signature. 214 226 - T 11-11-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 PRINTS PR01050 Pyruvate kinase family signature 243 267 2.6E-81 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 PRINTS PR01050 Pyruvate kinase family signature 293 311 2.6E-81 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 PRINTS PR01050 Pyruvate kinase family signature 312 328 2.6E-81 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 PRINTS PR01050 Pyruvate kinase family signature 268 292 2.6E-81 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 PRINTS PR01050 Pyruvate kinase family signature 216 242 2.6E-81 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.6E-81 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 PRINTS PR01050 Pyruvate kinase family signature 185 199 2.6E-81 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 Gene3D G3DSA:3.20.20.60 2 72 6.0E-117 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 Gene3D G3DSA:3.20.20.60 168 324 6.0E-117 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 Gene3D G3DSA:3.50.30.10 470 577 1.4E-26 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 SUPERFAMILY SSF50800 71 166 4.54E-27 T 11-11-2016 IPR011037 Pyruvate kinase-like, insert domain Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 Pfam PF00391 PEP-utilising enzyme, mobile domain 503 575 4.3E-22 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 SUPERFAMILY SSF52009 465 583 1.24E-30 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 Gene3D G3DSA:3.40.1380.20 325 469 2.0E-52 T 11-11-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 Pfam PF00224 Pyruvate kinase, barrel domain 1 342 6.8E-152 T 11-11-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 SUPERFAMILY SSF51621 166 341 5.23E-105 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 SUPERFAMILY SSF51621 1 75 5.23E-105 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 Pfam PF02887 Pyruvate kinase, alpha/beta domain 357 469 1.6E-36 T 11-11-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS20965 f701b1d49bd4188097eadf9bb20fa4b8 585 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 472 2.1E-188 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Gferi_RS16740 8eb77fd802dc372b318abf16ab6725da 188 SUPERFAMILY SSF53178 3 187 4.84E-66 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Gferi_RS16740 8eb77fd802dc372b318abf16ab6725da 188 Gene3D G3DSA:3.40.50.1470 3 188 2.1E-72 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Gferi_RS16740 8eb77fd802dc372b318abf16ab6725da 188 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 180 35.362 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Gferi_RS16740 8eb77fd802dc372b318abf16ab6725da 188 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 110 120 - T 11-11-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Gferi_RS16740 8eb77fd802dc372b318abf16ab6725da 188 Pfam PF01195 Peptidyl-tRNA hydrolase 6 186 1.9E-59 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Gferi_RS16740 8eb77fd802dc372b318abf16ab6725da 188 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 187 3.8E-63 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Gferi_RS16740 8eb77fd802dc372b318abf16ab6725da 188 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 11-11-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Gferi_RS11995 972517572731a93a0daccb496f27aaa7 489 Gene3D G3DSA:3.90.100.10 413 483 6.2E-27 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Gferi_RS11995 972517572731a93a0daccb496f27aaa7 489 SUPERFAMILY SSF55904 343 484 3.66E-35 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Gferi_RS11995 972517572731a93a0daccb496f27aaa7 489 Gene3D G3DSA:3.40.640.10 9 285 9.9E-99 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS11995 972517572731a93a0daccb496f27aaa7 489 Gene3D G3DSA:3.90.1150.10 320 412 7.1E-11 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS11995 972517572731a93a0daccb496f27aaa7 489 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 10 372 2.2E-83 T 11-11-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Gferi_RS11995 972517572731a93a0daccb496f27aaa7 489 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 388 471 4.4E-11 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Gferi_RS11995 972517572731a93a0daccb496f27aaa7 489 SUPERFAMILY SSF53383 10 386 8.97E-90 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS03305 2150a422c8f2f090b3dedc3f18f7dffa 212 Gene3D G3DSA:3.40.50.280 79 212 8.6E-47 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS03305 2150a422c8f2f090b3dedc3f18f7dffa 212 SUPERFAMILY SSF52242 73 212 8.63E-41 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS03305 2150a422c8f2f090b3dedc3f18f7dffa 212 SUPERFAMILY SSF47644 4 84 9.15E-16 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS03305 2150a422c8f2f090b3dedc3f18f7dffa 212 Pfam PF02607 B12 binding domain 6 79 1.8E-10 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS03305 2150a422c8f2f090b3dedc3f18f7dffa 212 SMART SM01018 1 86 7.2E-16 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS03305 2150a422c8f2f090b3dedc3f18f7dffa 212 Gene3D G3DSA:1.10.1240.10 5 78 9.3E-11 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS03305 2150a422c8f2f090b3dedc3f18f7dffa 212 Pfam PF02310 B12 binding domain 94 195 6.3E-22 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS03310 697b37709c42ce8579d0e87b4ce460d9 455 Gene3D G3DSA:3.20.20.210 183 381 1.4E-13 T 11-11-2016 Gferi_RS03310 697b37709c42ce8579d0e87b4ce460d9 455 SUPERFAMILY SSF51726 11 382 2.62E-30 T 11-11-2016 Gferi_RS03310 697b37709c42ce8579d0e87b4ce460d9 455 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 205 357 5.7E-6 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS06245 0b098f7080e419a342421eb5ac17c7f8 69 TIGRFAM TIGR01918 various_sel_PB: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family 1 68 1.9E-23 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS09070 a9578dfedf3fd19c48fbcd4462f9e7a6 72 SUPERFAMILY SSF50037 7 70 2.5E-7 T 11-11-2016 IPR008988 Transcriptional repressor, C-terminal Gferi_RS09070 a9578dfedf3fd19c48fbcd4462f9e7a6 72 Pfam PF04023 FeoA domain 1 70 2.9E-9 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Gferi_RS09070 a9578dfedf3fd19c48fbcd4462f9e7a6 72 SMART SM00899 1 71 5.3E-6 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Gferi_RS25895 a6289b407122f52ba33a15f5e666509e 596 SMART SM00790 8 206 5.6E-64 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS25895 a6289b407122f52ba33a15f5e666509e 596 Gene3D G3DSA:1.10.599.10 436 558 3.4E-10 T 11-11-2016 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 Gferi_RS25895 a6289b407122f52ba33a15f5e666509e 596 SUPERFAMILY SSF56228 8 209 9.42E-51 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS25895 a6289b407122f52ba33a15f5e666509e 596 Gene3D G3DSA:1.10.569.10 240 432 1.3E-48 T 11-11-2016 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 Gferi_RS25895 a6289b407122f52ba33a15f5e666509e 596 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 8 204 3.3E-57 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS25895 a6289b407122f52ba33a15f5e666509e 596 SUPERFAMILY SSF48310 213 571 8.89E-81 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS25895 a6289b407122f52ba33a15f5e666509e 596 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 220 561 6.0E-61 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS25895 a6289b407122f52ba33a15f5e666509e 596 Gene3D G3DSA:3.60.9.10 8 209 7.2E-60 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS12380 659d50aa8cf4ca51dcfedb34d693ae84 173 TIGRFAM TIGR02357 ECF_ThiT_YuaJ: energy-coupled thiamine transporter ThiT 7 170 5.4E-45 T 11-11-2016 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 Gferi_RS12380 659d50aa8cf4ca51dcfedb34d693ae84 173 Pfam PF09515 Thiamine transporter protein (Thia_YuaJ) 9 168 9.7E-50 T 11-11-2016 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 Gene3D G3DSA:3.40.50.1370 146 317 1.1E-72 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 1.8E-24 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 1.8E-24 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 295 318 1.8E-24 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 266 275 1.8E-24 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 Gene3D G3DSA:3.40.50.1370 3 145 6.1E-56 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 331 81.819 T 11-11-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 330 6.3E-129 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 2.2E-30 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 2.2E-30 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 2.2E-30 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 2.2E-30 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 PRINTS PR00102 Ornithine carbamoyltransferase signature 309 320 2.2E-30 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 328 6.4E-55 T 11-11-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 2.4E-46 T 11-11-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 SUPERFAMILY SSF53671 4 330 3.93E-100 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS11660 04bdaf977b75145259749309be284e54 331 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Gferi_RS09555 03c9fb17ce61d31e2ee0bc47518b3ffb 532 PIRSF PIRSF000858 1 520 7.5E-214 T 11-11-2016 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 Gferi_RS09555 03c9fb17ce61d31e2ee0bc47518b3ffb 532 Gene3D G3DSA:3.40.810.20 274 508 1.1E-69 T 11-11-2016 Gferi_RS09555 03c9fb17ce61d31e2ee0bc47518b3ffb 532 SUPERFAMILY SSF100950 3 253 3.4E-80 T 11-11-2016 Gferi_RS09555 03c9fb17ce61d31e2ee0bc47518b3ffb 532 Gene3D G3DSA:3.40.1080.10 3 239 1.4E-63 T 11-11-2016 Gferi_RS09555 03c9fb17ce61d31e2ee0bc47518b3ffb 532 SMART SM00882 4 241 3.3E-57 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS09555 03c9fb17ce61d31e2ee0bc47518b3ffb 532 SMART SM00882 279 486 1.4E-5 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS09555 03c9fb17ce61d31e2ee0bc47518b3ffb 532 SUPERFAMILY SSF100950 274 515 1.56E-75 T 11-11-2016 Gferi_RS09555 03c9fb17ce61d31e2ee0bc47518b3ffb 532 Pfam PF01144 Coenzyme A transferase 6 240 1.5E-32 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 Gene3D G3DSA:3.40.190.10 1 86 4.3E-14 T 11-11-2016 Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 Gene3D G3DSA:3.40.190.10 237 273 4.3E-14 T 11-11-2016 Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 SUPERFAMILY SSF55383 312 397 2.42E-26 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 Gene3D G3DSA:3.40.190.10 102 236 6.3E-43 T 11-11-2016 Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 SUPERFAMILY SSF53850 31 274 4.48E-69 T 11-11-2016 Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 Gene3D G3DSA:3.30.457.10 292 316 4.0E-5 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 Gene3D G3DSA:3.30.457.10 317 392 1.0E-29 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 1 271 2.9E-68 T 11-11-2016 IPR011862 Phosphate binding protein GO:0006810 Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 Pfam PF12849 PBP superfamily domain 29 262 4.0E-39 T 11-11-2016 IPR024370 PBP domain Gferi_RS12040 6da4785ae54c9ba34e7c67a0fdbc5719 404 Pfam PF07833 Copper amine oxidase N-terminal domain 310 402 1.4E-33 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22405 1e1848869587e27e2000090aba0496ba 461 Pfam PF00672 HAMP domain 286 353 1.6E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS22405 1e1848869587e27e2000090aba0496ba 461 SMART SM00304 305 357 8.5E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS22405 1e1848869587e27e2000090aba0496ba 461 SUPERFAMILY SSF158472 305 355 2.09E-9 T 11-11-2016 Gferi_RS22405 1e1848869587e27e2000090aba0496ba 461 Gene3D G3DSA:3.30.450.20 84 177 4.5E-18 T 11-11-2016 Gferi_RS22405 1e1848869587e27e2000090aba0496ba 461 SUPERFAMILY SSF103190 90 184 5.34E-14 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS22405 1e1848869587e27e2000090aba0496ba 461 Pfam PF02743 Cache domain 40 234 9.9E-30 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS14895 35bf8a307fc797485a5ddf6a523ec475 230 SMART SM00862 152 228 3.6E-28 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14895 35bf8a307fc797485a5ddf6a523ec475 230 Gene3D G3DSA:3.40.50.2300 2 125 1.9E-41 T 11-11-2016 Gferi_RS14895 35bf8a307fc797485a5ddf6a523ec475 230 SUPERFAMILY SSF52172 2 126 1.35E-40 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS14895 35bf8a307fc797485a5ddf6a523ec475 230 SUPERFAMILY SSF46894 128 228 2.44E-29 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS14895 35bf8a307fc797485a5ddf6a523ec475 230 SMART SM00448 4 114 7.4E-41 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14895 35bf8a307fc797485a5ddf6a523ec475 230 Pfam PF00072 Response regulator receiver domain 6 115 1.3E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14895 35bf8a307fc797485a5ddf6a523ec475 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 4.2E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14895 35bf8a307fc797485a5ddf6a523ec475 230 Gene3D G3DSA:1.10.10.10 130 229 1.4E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11185 cfb8341da84af93901795c5384c84f93 331 SUPERFAMILY SSF56655 1 319 3.05E-108 T 11-11-2016 Gferi_RS11185 cfb8341da84af93901795c5384c84f93 331 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 315 8.3E-143 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Gferi_RS11185 cfb8341da84af93901795c5384c84f93 331 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 321 8.7E-127 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Gferi_RS11185 cfb8341da84af93901795c5384c84f93 331 Gene3D G3DSA:3.30.540.10 174 320 6.0E-44 T 11-11-2016 Gferi_RS11185 cfb8341da84af93901795c5384c84f93 331 Gene3D G3DSA:3.30.540.10 1 173 2.8E-63 T 11-11-2016 Gferi_RS11185 cfb8341da84af93901795c5384c84f93 331 PIRSF PIRSF004532 1 325 4.2E-143 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Gferi_RS06925 1b691eac395c5ec796684cc8154e1649 188 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 4 179 2.0E-70 T 11-11-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Gferi_RS06925 1b691eac395c5ec796684cc8154e1649 188 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 6 180 2.7E-80 T 11-11-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Gferi_RS06925 1b691eac395c5ec796684cc8154e1649 188 SUPERFAMILY SSF51182 4 182 8.54E-76 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS06925 1b691eac395c5ec796684cc8154e1649 188 Gene3D G3DSA:2.60.120.10 5 182 1.8E-82 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS06925 1b691eac395c5ec796684cc8154e1649 188 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 9 179 2.2E-75 T 11-11-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 Gferi_RS18755 27eca4051553b9705fdbb9902a276e5f 413 SUPERFAMILY SSF102114 25 294 2.35E-40 T 11-11-2016 Gferi_RS18755 27eca4051553b9705fdbb9902a276e5f 413 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 310 399 4.9E-14 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Gferi_RS18755 27eca4051553b9705fdbb9902a276e5f 413 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 8 288 3.1E-115 T 11-11-2016 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 Gferi_RS18755 27eca4051553b9705fdbb9902a276e5f 413 SUPERFAMILY SSF53146 301 409 5.76E-24 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Gferi_RS18755 27eca4051553b9705fdbb9902a276e5f 413 Pfam PF04055 Radical SAM superfamily 31 213 9.7E-23 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS18755 27eca4051553b9705fdbb9902a276e5f 413 Gene3D G3DSA:3.20.20.70 27 334 1.3E-41 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS18755 27eca4051553b9705fdbb9902a276e5f 413 SMART SM00729 27 253 0.0025 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS18755 27eca4051553b9705fdbb9902a276e5f 413 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 33 44 - T 11-11-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Gferi_RS14940 8d4342ba4ac76949a9916abc27cb1194 82 SUPERFAMILY SSF51556 24 78 2.99E-12 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS14940 8d4342ba4ac76949a9916abc27cb1194 82 Gene3D G3DSA:3.20.20.140 24 78 2.5E-12 T 11-11-2016 Gferi_RS09345 298a65d861c9e6756da95313aa6e8c77 152 Pfam PF01584 CheW-like domain 5 142 2.5E-35 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS09345 298a65d861c9e6756da95313aa6e8c77 152 SUPERFAMILY SSF50341 2 143 8.24E-37 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS09345 298a65d861c9e6756da95313aa6e8c77 152 Gene3D G3DSA:2.30.30.40 82 133 9.9E-9 T 11-11-2016 Gferi_RS09345 298a65d861c9e6756da95313aa6e8c77 152 SMART SM00260 1 139 1.0E-38 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS09345 298a65d861c9e6756da95313aa6e8c77 152 Gene3D G3DSA:2.40.50.180 46 81 6.3E-14 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 SUPERFAMILY SSF56784 319 339 5.07E-58 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 SUPERFAMILY SSF56784 456 701 5.07E-58 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Gene3D G3DSA:2.70.150.10 11 52 4.4E-39 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Gene3D G3DSA:2.70.150.10 106 221 4.4E-39 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 SMART SM00831 2 73 1.6E-13 T 11-11-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Pfam PF00690 Cation transporter/ATPase, N-terminus 4 68 1.6E-16 T 11-11-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Gene3D G3DSA:1.20.1110.10 53 105 3.9E-121 T 11-11-2016 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Gene3D G3DSA:1.20.1110.10 565 853 3.9E-121 T 11-11-2016 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 SUPERFAMILY SSF81665 222 315 3.14E-129 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 SUPERFAMILY SSF81665 646 852 3.14E-129 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 SUPERFAMILY SSF81665 4 111 3.14E-129 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Gene3D G3DSA:3.40.1110.10 312 501 1.4E-53 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 516 526 1.6E-41 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 494 505 1.6E-41 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 321 335 1.6E-41 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 158 172 1.6E-41 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 596 615 1.6E-41 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 620 632 1.6E-41 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Pfam PF00122 E1-E2 ATPase 78 312 1.7E-66 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 SUPERFAMILY SSF81660 327 506 1.61E-44 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Pfam PF00702 haloacid dehalogenase-like hydrolase 317 610 2.2E-21 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 568 684 5.9E-35 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 209 348 7.2E-28 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 80 177 8.8E-20 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 433 543 7.8E-19 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 Pfam PF00689 Cation transporting ATPase, C-terminus 681 850 2.5E-51 T 11-11-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 SUPERFAMILY SSF81653 111 221 1.96E-31 T 11-11-2016 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 596 612 3.6E-14 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 568 584 3.6E-14 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 459 477 3.6E-14 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 628 653 3.6E-14 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 323 329 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS02520 48c4b7dc57370c2cad8570bb6f16d77f 856 TIGRFAM TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 6 851 5.9E-154 T 11-11-2016 IPR006408 P-type ATPase, subfamily IIB GO:0005388|GO:0005524|GO:0016020|GO:0070588 Reactome: R-HSA-418359|Reactome: R-HSA-5578775|Reactome: R-HSA-936837 Gferi_RS03550 debc366777544648516d531e6cc9a3b0 196 TIGRFAM TIGR02366 DHAK_reg: probable dihydroxyacetone kinase regulator 4 168 4.6E-40 T 11-11-2016 IPR012738 Transcription regulator DhaS Gferi_RS03550 debc366777544648516d531e6cc9a3b0 196 Gene3D G3DSA:1.10.357.10 5 172 1.1E-15 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS03550 debc366777544648516d531e6cc9a3b0 196 SUPERFAMILY SSF46689 4 66 1.94E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS03550 debc366777544648516d531e6cc9a3b0 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 54 4.4E-7 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS03550 debc366777544648516d531e6cc9a3b0 196 Pfam PF14278 Transcriptional regulator C-terminal region 79 153 3.2E-15 T 11-11-2016 Gferi_RS19560 213e2f060b47368eb2d3cd4ab3fb792e 197 Pfam PF10628 Outer spore coat protein E (CotE) 9 175 9.3E-22 T 11-11-2016 IPR018901 Spore coat protein CotE Gferi_RS20020 e7addc8d77964d4cabc7c48f5bcf910d 108 Pfam PF13484 4Fe-4S double cluster binding domain 44 106 1.8E-7 T 11-11-2016 Gferi_RS20020 e7addc8d77964d4cabc7c48f5bcf910d 108 SUPERFAMILY SSF54862 32 106 1.95E-8 T 11-11-2016 Gferi_RS20020 e7addc8d77964d4cabc7c48f5bcf910d 108 Gene3D G3DSA:3.30.70.20 42 106 2.0E-6 T 11-11-2016 Gferi_RS26810 7b2d6600f25280e571a702d4de57ddd6 256 SUPERFAMILY SSF53448 1 250 2.82E-57 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS26810 7b2d6600f25280e571a702d4de57ddd6 256 Gene3D G3DSA:3.90.550.10 1 255 1.4E-60 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS26810 7b2d6600f25280e571a702d4de57ddd6 256 Pfam PF00483 Nucleotidyl transferase 2 221 3.0E-17 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS08615 2eb8f4ee12b2e9be06d29620f4c8f985 508 Pfam PF11230 Protein of unknown function (DUF3029) 17 504 3.2E-196 T 11-11-2016 IPR016905 Glycyl radical enzyme, HI0521, predicted Gferi_RS08615 2eb8f4ee12b2e9be06d29620f4c8f985 508 Gene3D G3DSA:3.20.70.20 80 245 7.7E-13 T 11-11-2016 Gferi_RS08615 2eb8f4ee12b2e9be06d29620f4c8f985 508 SUPERFAMILY SSF51998 27 483 2.5E-65 T 11-11-2016 Gferi_RS08615 2eb8f4ee12b2e9be06d29620f4c8f985 508 PIRSF PIRSF028991 1 508 1.0E-184 T 11-11-2016 IPR016905 Glycyl radical enzyme, HI0521, predicted Gferi_RS08615 2eb8f4ee12b2e9be06d29620f4c8f985 508 TIGRFAM TIGR04040 glycyl_YjjI: glycine radical enzyme, YjjI family 7 504 2.9E-208 T 11-11-2016 IPR016905 Glycyl radical enzyme, HI0521, predicted Gferi_RS19250 1e491c754a7f8f7c6c61184fa4cbe8f8 439 Pfam PF13416 Bacterial extracellular solute-binding protein 62 368 6.6E-37 T 11-11-2016 Gferi_RS19250 1e491c754a7f8f7c6c61184fa4cbe8f8 439 SUPERFAMILY SSF53850 45 434 1.66E-61 T 11-11-2016 Gferi_RS19250 1e491c754a7f8f7c6c61184fa4cbe8f8 439 Gene3D G3DSA:3.40.190.10 167 365 2.2E-40 T 11-11-2016 Gferi_RS25180 1e740b6a0d7669e563ed3d9fef363ade 167 Hamap MF_00163 Peptide deformylase [def]. 2 162 19.175 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS25180 1e740b6a0d7669e563ed3d9fef363ade 167 SUPERFAMILY SSF56420 2 161 2.09E-39 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS25180 1e740b6a0d7669e563ed3d9fef363ade 167 Pfam PF01327 Polypeptide deformylase 4 153 1.4E-35 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS25180 1e740b6a0d7669e563ed3d9fef363ade 167 PIRSF PIRSF004749 1 165 2.3E-27 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS25180 1e740b6a0d7669e563ed3d9fef363ade 167 PRINTS PR01576 Peptide deformylase signature 39 68 3.8E-8 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS25180 1e740b6a0d7669e563ed3d9fef363ade 167 PRINTS PR01576 Peptide deformylase signature 124 153 3.8E-8 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS25180 1e740b6a0d7669e563ed3d9fef363ade 167 PRINTS PR01576 Peptide deformylase signature 93 104 3.8E-8 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS25180 1e740b6a0d7669e563ed3d9fef363ade 167 Gene3D G3DSA:3.90.45.10 1 161 9.0E-38 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS26015 289e26a4e001012393878f4dc5c76455 90 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 48 4.0E-10 T 11-11-2016 Gferi_RS26015 289e26a4e001012393878f4dc5c76455 90 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 22 41 - T 11-11-2016 IPR020808 Bacterial microcompartments protein, conserved site Gferi_RS26015 289e26a4e001012393878f4dc5c76455 90 Pfam PF00936 BMC domain 5 80 4.8E-29 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26015 289e26a4e001012393878f4dc5c76455 90 SMART SM00877 4 80 6.5E-37 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26015 289e26a4e001012393878f4dc5c76455 90 SUPERFAMILY SSF143414 4 89 1.02E-32 T 11-11-2016 Gferi_RS24995 3e7b44890ae867cdfa1ed5c9fddecce4 154 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 1 153 37.777 T 11-11-2016 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 Gferi_RS24995 3e7b44890ae867cdfa1ed5c9fddecce4 154 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 73 150 1.0E-31 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS24995 3e7b44890ae867cdfa1ed5c9fddecce4 154 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 71 150 1.0E-35 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS24995 3e7b44890ae867cdfa1ed5c9fddecce4 154 SUPERFAMILY SSF53155 3 76 1.63E-14 T 11-11-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS24995 3e7b44890ae867cdfa1ed5c9fddecce4 154 SUPERFAMILY SSF46767 70 151 4.05E-32 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS24995 3e7b44890ae867cdfa1ed5c9fddecce4 154 Gene3D G3DSA:1.10.10.10 70 151 1.6E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24995 3e7b44890ae867cdfa1ed5c9fddecce4 154 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 121 127 - T 11-11-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS16785 c33192f0d746fe1b67de61b2f1865614 97 Pfam PF07873 YabP family 14 78 3.7E-18 T 11-11-2016 IPR022476 Sporulation protein YabP/YqfC Gferi_RS16785 c33192f0d746fe1b67de61b2f1865614 97 TIGRFAM TIGR02892 spore_yabP: sporulation protein YabP 14 97 1.0E-26 T 11-11-2016 IPR012504 Sporulation protein YabP Gferi_RS16785 c33192f0d746fe1b67de61b2f1865614 97 PIRSF PIRSF011576 2 97 8.5E-20 T 11-11-2016 IPR012504 Sporulation protein YabP Gferi_RS16785 c33192f0d746fe1b67de61b2f1865614 97 ProDom PD067726 YABP B.SUBTILIS PRECURSOR UNCHARACTERIZED BH0074 SIGNAL CPE2477 PROTEIN 13 97 6.0E-16 T 11-11-2016 IPR012504 Sporulation protein YabP Gferi_RS10020 627842d80c852c22af303a267fd30e90 434 Pfam PF00860 Permease family 18 390 6.5E-47 T 11-11-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS10020 627842d80c852c22af303a267fd30e90 434 PIRSF PIRSF005353 1 431 4.8E-188 T 11-11-2016 IPR026033 Purine permease PbuG-like Gferi_RS05670 9a3a8f0ce51885a2e12c446b30dbe0a4 169 SUPERFAMILY SSF56784 1 166 2.62E-42 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS05670 9a3a8f0ce51885a2e12c446b30dbe0a4 169 PIRSF PIRSF004682 1 165 1.7E-54 T 11-11-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 Gferi_RS05670 9a3a8f0ce51885a2e12c446b30dbe0a4 169 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 3 141 1.7E-40 T 11-11-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 Gferi_RS05670 9a3a8f0ce51885a2e12c446b30dbe0a4 169 Pfam PF13242 HAD-hyrolase-like 97 141 1.0E-10 T 11-11-2016 Gferi_RS05670 9a3a8f0ce51885a2e12c446b30dbe0a4 169 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 3 143 7.2E-34 T 11-11-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Gferi_RS05670 9a3a8f0ce51885a2e12c446b30dbe0a4 169 Gene3D G3DSA:3.40.50.1000 1 164 1.8E-50 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS11360 59f011b1ee9350591bed69600ee653cd 164 Gene3D G3DSA:3.40.630.30 7 161 4.1E-27 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11360 59f011b1ee9350591bed69600ee653cd 164 SUPERFAMILY SSF55729 8 157 1.93E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11360 59f011b1ee9350591bed69600ee653cd 164 Pfam PF13673 Acetyltransferase (GNAT) domain 45 157 1.5E-17 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS14860 8dbc1810bf0af81384e334b5e373d3be 469 Gene3D G3DSA:3.50.50.60 127 272 4.3E-22 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS14860 8dbc1810bf0af81384e334b5e373d3be 469 Gene3D G3DSA:3.50.50.60 3 91 4.3E-22 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS14860 8dbc1810bf0af81384e334b5e373d3be 469 Pfam PF01266 FAD dependent oxidoreductase 4 216 2.1E-7 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Gferi_RS14860 8dbc1810bf0af81384e334b5e373d3be 469 SUPERFAMILY SSF51905 2 118 9.67E-31 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS14860 8dbc1810bf0af81384e334b5e373d3be 469 SUPERFAMILY SSF51905 146 232 9.67E-31 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS14860 8dbc1810bf0af81384e334b5e373d3be 469 SUPERFAMILY SSF51905 417 466 9.67E-31 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS14860 8dbc1810bf0af81384e334b5e373d3be 469 Gene3D G3DSA:3.50.50.60 401 464 2.7E-7 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS24585 02241c1debf7784f5f4af061f7920199 224 Gene3D G3DSA:3.40.50.300 2 217 5.9E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24585 02241c1debf7784f5f4af061f7920199 224 Pfam PF00005 ABC transporter 21 167 3.9E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS24585 02241c1debf7784f5f4af061f7920199 224 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS24585 02241c1debf7784f5f4af061f7920199 224 SMART SM00382 30 216 7.1E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS24585 02241c1debf7784f5f4af061f7920199 224 SUPERFAMILY SSF52540 4 218 4.53E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00790 7120a06e6a9d586839d64cca0fb40a99 236 Hamap MF_01220_B Uridylate kinase [pyrH]. 3 234 45.39 T 11-11-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Gferi_RS00790 7120a06e6a9d586839d64cca0fb40a99 236 Pfam PF00696 Amino acid kinase family 6 212 8.5E-30 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00790 7120a06e6a9d586839d64cca0fb40a99 236 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 5 233 5.5E-100 T 11-11-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Gferi_RS00790 7120a06e6a9d586839d64cca0fb40a99 236 SUPERFAMILY SSF53633 2 234 4.32E-74 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00790 7120a06e6a9d586839d64cca0fb40a99 236 Gene3D G3DSA:3.40.1160.10 2 233 4.5E-89 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00790 7120a06e6a9d586839d64cca0fb40a99 236 PIRSF PIRSF005650 1 236 8.8E-97 T 11-11-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 Gene3D G3DSA:1.10.287.950 331 408 3.7E-4 T 11-11-2016 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 Gene3D G3DSA:1.10.287.950 409 614 2.4E-51 T 11-11-2016 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 443 639 5.0E-47 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 Gene3D G3DSA:3.30.450.20 84 160 4.3E-4 T 11-11-2016 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 Pfam PF02743 Cache domain 38 262 1.7E-32 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 SMART SM00283 381 656 1.2E-69 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 Pfam PF00672 HAMP domain 281 348 7.5E-15 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 SUPERFAMILY SSF103190 56 179 9.68E-8 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 Gene3D G3DSA:3.30.450.20 161 276 6.7E-24 T 11-11-2016 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 SUPERFAMILY SSF58104 320 354 8.5E-71 T 11-11-2016 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 SUPERFAMILY SSF58104 387 656 8.5E-71 T 11-11-2016 Gferi_RS23000 0c1e5affd8d08347795c55084025778e 657 SMART SM00304 300 352 4.2E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS23715 aeb52d4a495316050e384697389b3c5e 515 Pfam PF07508 Recombinase 194 301 1.9E-24 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS23715 aeb52d4a495316050e384697389b3c5e 515 SMART SM00857 23 172 8.9E-51 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23715 aeb52d4a495316050e384697389b3c5e 515 Pfam PF00239 Resolvase, N terminal domain 23 171 1.2E-35 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23715 aeb52d4a495316050e384697389b3c5e 515 Gene3D G3DSA:3.40.50.1390 22 153 2.5E-34 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23715 aeb52d4a495316050e384697389b3c5e 515 Pfam PF13408 Recombinase zinc beta ribbon domain 322 379 1.5E-10 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS23715 aeb52d4a495316050e384697389b3c5e 515 SUPERFAMILY SSF53041 22 171 3.4E-37 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS24255 0e2adde6690ef76c7f8b9ad025341cff 206 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 24 145 2.5E-39 T 11-11-2016 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Gferi_RS24255 0e2adde6690ef76c7f8b9ad025341cff 206 Pfam PF13847 Methyltransferase domain 42 150 3.2E-10 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS24255 0e2adde6690ef76c7f8b9ad025341cff 206 Gene3D G3DSA:3.40.50.150 18 196 7.1E-33 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS24255 0e2adde6690ef76c7f8b9ad025341cff 206 SUPERFAMILY SSF53335 11 168 7.64E-31 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS14045 5a6551072d0eff3e082f45ec20341b39 418 Gene3D G3DSA:3.40.50.1820 321 412 3.8E-33 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14045 5a6551072d0eff3e082f45ec20341b39 418 Gene3D G3DSA:3.40.50.1820 127 259 3.8E-33 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14045 5a6551072d0eff3e082f45ec20341b39 418 PIRSF PIRSF016521 1 418 1.5E-89 T 11-11-2016 IPR016662 Acyl-CoA thioesterase, long chain GO:0006637|GO:0016790 Gferi_RS14045 5a6551072d0eff3e082f45ec20341b39 418 Pfam PF04775 Acyl-CoA thioester hydrolase/BAAT N-terminal region 16 134 5.0E-27 T 11-11-2016 IPR006862 Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase Gferi_RS14045 5a6551072d0eff3e082f45ec20341b39 418 SUPERFAMILY SSF53474 68 415 8.96E-35 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14045 5a6551072d0eff3e082f45ec20341b39 418 Pfam PF08840 BAAT / Acyl-CoA thioester hydrolase C terminal 202 389 2.7E-36 T 11-11-2016 IPR014940 BAAT/Acyl-CoA thioester hydrolase C-terminal Reactome: R-HSA-75105 Gferi_RS19465 5ce0b0cb9e77604910499bc333223d86 270 Pfam PF01061 ABC-2 type transporter 8 225 6.8E-15 T 11-11-2016 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Gferi_RS19465 5ce0b0cb9e77604910499bc333223d86 270 PRINTS PR00164 ABC-2 type transport system membrane protein signature 184 203 4.9E-5 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS19465 5ce0b0cb9e77604910499bc333223d86 270 PRINTS PR00164 ABC-2 type transport system membrane protein signature 204 223 4.9E-5 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS19465 5ce0b0cb9e77604910499bc333223d86 270 PRINTS PR00164 ABC-2 type transport system membrane protein signature 147 171 4.9E-5 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS19465 5ce0b0cb9e77604910499bc333223d86 270 PIRSF PIRSF006648 28 261 2.9E-20 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS26740 795fda1f8f23a29feb15fabd262bdd0c 348 Gene3D G3DSA:3.40.50.720 1 151 1.3E-23 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS26740 795fda1f8f23a29feb15fabd262bdd0c 348 SUPERFAMILY SSF51735 4 144 7.51E-18 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS26740 795fda1f8f23a29feb15fabd262bdd0c 348 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 4 104 5.1E-7 T 11-11-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS03580 012d7987d0203b6421f49bdfecc93062 566 Gene3D G3DSA:3.90.1200.10 263 317 4.5E-9 T 11-11-2016 Gferi_RS03580 012d7987d0203b6421f49bdfecc93062 566 Pfam PF03109 ABC1 family 119 236 3.1E-37 T 11-11-2016 IPR004147 UbiB domain Gferi_RS03580 012d7987d0203b6421f49bdfecc93062 566 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 10 446 7.4E-155 T 11-11-2016 IPR010232 Probable protein kinase UbiB GO:0006744 Gferi_RS03580 012d7987d0203b6421f49bdfecc93062 566 SUPERFAMILY SSF56112 199 316 3.42E-30 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS03580 012d7987d0203b6421f49bdfecc93062 566 SUPERFAMILY SSF56112 101 164 3.42E-30 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS26145 e834914d2b71282fc418dc31503a8e41 344 SUPERFAMILY SSF51690 124 337 7.72E-54 T 11-11-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Gferi_RS26145 e834914d2b71282fc418dc31503a8e41 344 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 44 125 5.0E-13 T 11-11-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Gferi_RS26145 e834914d2b71282fc418dc31503a8e41 344 Gene3D G3DSA:3.90.1170.20 19 118 1.7E-24 T 11-11-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Gferi_RS26145 e834914d2b71282fc418dc31503a8e41 344 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 128 316 3.5E-20 T 11-11-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Gferi_RS26145 e834914d2b71282fc418dc31503a8e41 344 Gene3D G3DSA:3.20.20.70 121 306 2.5E-47 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS26145 e834914d2b71282fc418dc31503a8e41 344 SUPERFAMILY SSF54675 22 126 2.09E-25 T 11-11-2016 Gferi_RS11740 8e1ec127127baa2208f7a093cc6345f5 138 SUPERFAMILY SSF54637 3 136 4.52E-41 T 11-11-2016 IPR029069 HotDog domain Gferi_RS11740 8e1ec127127baa2208f7a093cc6345f5 138 Pfam PF01575 MaoC like domain 13 117 1.1E-26 T 11-11-2016 IPR002539 MaoC-like domain Gferi_RS11740 8e1ec127127baa2208f7a093cc6345f5 138 Gene3D G3DSA:3.10.129.10 4 135 1.1E-45 T 11-11-2016 IPR029069 HotDog domain Gferi_RS27135 5e830bd10555609116d6a39a5c04b94c 311 SUPERFAMILY SSF46785 6 143 6.07E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS27135 5e830bd10555609116d6a39a5c04b94c 311 Pfam PF13673 Acetyltransferase (GNAT) domain 202 293 9.0E-14 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS27135 5e830bd10555609116d6a39a5c04b94c 311 Gene3D G3DSA:1.10.10.10 10 144 2.2E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS27135 5e830bd10555609116d6a39a5c04b94c 311 SUPERFAMILY SSF55729 159 295 1.33E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS27135 5e830bd10555609116d6a39a5c04b94c 311 Pfam PF12802 MarR family 35 91 8.7E-13 T 11-11-2016 Gferi_RS27135 5e830bd10555609116d6a39a5c04b94c 311 SMART SM00347 28 128 8.4E-16 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS27135 5e830bd10555609116d6a39a5c04b94c 311 Gene3D G3DSA:3.40.630.30 153 308 2.8E-32 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Gene3D G3DSA:3.30.30.30 39 100 2.2E-18 T 11-11-2016 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 575 3.7E-292 T 11-11-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 SUPERFAMILY SSF53067 163 354 6.21E-66 T 11-11-2016 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Gene3D G3DSA:3.30.420.40 4 38 2.1E-58 T 11-11-2016 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Gene3D G3DSA:3.30.420.40 101 166 2.1E-58 T 11-11-2016 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 168 181 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 608 37.549 T 11-11-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Gene3D G3DSA:1.20.1270.10 504 575 1.1E-27 T 11-11-2016 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 SUPERFAMILY SSF100920 356 512 8.24E-62 T 11-11-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 309 323 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 SUPERFAMILY SSF53067 1 159 8.2E-59 T 11-11-2016 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Gene3D G3DSA:3.90.640.10 202 286 6.1E-30 T 11-11-2016 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 SUPERFAMILY SSF100934 479 582 1.83E-17 T 11-11-2016 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 174 184 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 114 134 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 441 457 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 31 43 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 3 16 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 54 62 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 337 357 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 306 322 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 PRINTS PR00301 70kDa heat shock protein signature 360 379 7.5E-82 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Gene3D G3DSA:3.30.420.40 291 333 2.1E-35 T 11-11-2016 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Gene3D G3DSA:3.30.420.40 167 201 2.1E-35 T 11-11-2016 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Gene3D G3DSA:2.60.34.10 362 503 2.0E-72 T 11-11-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Pfam PF00012 Hsp70 protein 4 78 1.4E-29 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS02345 1631b5d4703f6ddf18a8cefbff4e5ad4 612 Pfam PF00012 Hsp70 protein 79 576 2.5E-221 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS05985 5f0af1ba076449aadd0a9d437073b777 108 Pfam PF11756 Nitrous oxide-stimulated promoter 2 93 2.1E-17 T 11-11-2016 IPR020483 Uncharacterised protein family YgbA Gferi_RS05985 5f0af1ba076449aadd0a9d437073b777 108 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 36 107 9.0E-14 T 11-11-2016 IPR020483 Uncharacterised protein family YgbA Gferi_RS17600 bb8553647eae7239d69989e6e8f81da7 266 SUPERFAMILY SSF51717 1 260 3.92E-80 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17600 bb8553647eae7239d69989e6e8f81da7 266 Gene3D G3DSA:3.20.20.20 1 260 1.7E-86 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17600 bb8553647eae7239d69989e6e8f81da7 266 Pfam PF00809 Pterin binding enzyme 7 227 2.6E-28 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS14220 5c8a3aa5df698c23ea7dce8ac9400c9a 316 Pfam PF00480 ROK family 4 313 2.2E-51 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS14220 5c8a3aa5df698c23ea7dce8ac9400c9a 316 Gene3D G3DSA:3.30.420.40 1 141 5.9E-37 T 11-11-2016 Gferi_RS14220 5c8a3aa5df698c23ea7dce8ac9400c9a 316 SUPERFAMILY SSF53067 1 315 3.06E-51 T 11-11-2016 Gferi_RS14220 5c8a3aa5df698c23ea7dce8ac9400c9a 316 Gene3D G3DSA:3.30.420.40 142 301 1.6E-40 T 11-11-2016 Gferi_RS07105 6d5b51cc6938b268d8da1745e950e01b 340 Pfam PF01070 FMN-dependent dehydrogenase 197 338 2.6E-55 T 11-11-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 Gferi_RS07105 6d5b51cc6938b268d8da1745e950e01b 340 Pfam PF01070 FMN-dependent dehydrogenase 37 181 1.9E-8 T 11-11-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 Gferi_RS07105 6d5b51cc6938b268d8da1745e950e01b 340 Gene3D G3DSA:3.20.20.70 37 338 1.6E-73 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS07105 6d5b51cc6938b268d8da1745e950e01b 340 SUPERFAMILY SSF51395 38 337 6.04E-55 T 11-11-2016 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 Pfam PF00672 HAMP domain 186 253 2.4E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 SMART SM00387 502 616 3.6E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 SUPERFAMILY SSF47384 372 457 1.41E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 SMART SM00091 268 334 4.1E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 Gene3D G3DSA:3.30.565.10 442 614 2.9E-48 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 SMART SM00388 388 456 1.2E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 SUPERFAMILY SSF158472 207 254 2.35E-10 T 11-11-2016 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 Pfam PF00989 PAS fold 271 379 2.4E-13 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 SUPERFAMILY SSF55874 445 612 1.83E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 SMART SM00304 205 257 3.4E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 165 1.5E-9 T 11-11-2016 IPR024478 4HB MCP domain Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 Gene3D G3DSA:3.30.450.20 268 383 9.0E-19 T 11-11-2016 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 505 614 2.3E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 613 2.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 555 2.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 594 2.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 559 569 2.6E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 Gene3D G3DSA:1.10.287.130 384 441 3.9E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 Pfam PF00512 His Kinase A (phospho-acceptor) domain 389 456 9.0E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 271 386 1.2E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS05425 cb1ed45d48d23443c1a28773932097c0 616 SUPERFAMILY SSF55785 261 380 2.79E-14 T 11-11-2016 IPR000014 PAS domain Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 Gene3D G3DSA:3.40.50.620 109 443 3.6E-118 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 SMART SM01016 6 85 6.3E-24 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 Pfam PF05746 DALR anticodon binding domain 451 566 6.3E-34 T 11-11-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 154 167 1.6E-23 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 130 146 1.6E-23 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 115 130 1.6E-23 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 PRINTS PR01038 Arginyl-tRNA synthetase signature 298 319 1.6E-23 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 Hamap MF_00123 Arginine--tRNA ligase [argS]. 6 566 27.258 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 Gene3D G3DSA:3.30.1360.70 4 101 3.6E-29 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 Gene3D G3DSA:1.10.730.10 445 566 6.4E-42 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 SMART SM00836 451 566 3.9E-50 T 11-11-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 5 566 8.7E-173 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 Pfam PF00750 tRNA synthetases class I (R) 95 437 4.3E-96 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 85 1.9E-18 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 123 134 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 SUPERFAMILY SSF55190 1 106 1.83E-25 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 SUPERFAMILY SSF47323 447 566 3.27E-37 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS04020 c9b62db6b8bd737a9b3b134570d11542 566 SUPERFAMILY SSF52374 110 445 2.35E-104 T 11-11-2016 Gferi_RS02860 b10bca01a185154b7d36f9e015976b99 102 SUPERFAMILY SSF52794 1 101 5.75E-34 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS02860 b10bca01a185154b7d36f9e015976b99 102 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 93 3.4E-19 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS02860 b10bca01a185154b7d36f9e015976b99 102 Gene3D G3DSA:3.40.50.270 1 101 4.6E-36 T 11-11-2016 Gferi_RS01950 be919d76376a1885cd1c8f1b86776b8a 376 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 362 8.9E-95 T 11-11-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS01950 be919d76376a1885cd1c8f1b86776b8a 376 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 3 366 34.321 T 11-11-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS01950 be919d76376a1885cd1c8f1b86776b8a 376 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 190 356 2.4E-39 T 11-11-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Gferi_RS01950 be919d76376a1885cd1c8f1b86776b8a 376 Gene3D G3DSA:3.40.50.2000 1 195 1.5E-67 T 11-11-2016 Gferi_RS01950 be919d76376a1885cd1c8f1b86776b8a 376 SUPERFAMILY SSF53756 1 366 3.77E-109 T 11-11-2016 Gferi_RS01950 be919d76376a1885cd1c8f1b86776b8a 376 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 3 142 1.3E-39 T 11-11-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Gferi_RS01950 be919d76376a1885cd1c8f1b86776b8a 376 Gene3D G3DSA:3.40.50.2000 196 336 8.8E-7 T 11-11-2016 Gferi_RS16595 7d3af6dd298220bc2dc4e538d92971c1 358 Pfam PF00155 Aminotransferase class I and II 29 350 1.8E-46 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS16595 7d3af6dd298220bc2dc4e538d92971c1 358 SUPERFAMILY SSF53383 12 350 1.41E-73 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS16595 7d3af6dd298220bc2dc4e538d92971c1 358 Gene3D G3DSA:3.40.640.10 41 258 8.3E-60 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS16595 7d3af6dd298220bc2dc4e538d92971c1 358 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 21 350 6.7E-85 T 11-11-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Gferi_RS16595 7d3af6dd298220bc2dc4e538d92971c1 358 Gene3D G3DSA:3.90.1150.10 259 354 6.9E-14 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 Gene3D G3DSA:3.60.120.10 5 454 3.8E-160 T 11-11-2016 IPR005801 ADC synthase GO:0009058 Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 PRINTS PR00095 Anthranilate synthase component I signature 308 321 4.4E-17 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 PRINTS PR00095 Anthranilate synthase component I signature 403 417 4.4E-17 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 PRINTS PR00095 Anthranilate synthase component I signature 388 402 4.4E-17 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 PRINTS PR00095 Anthranilate synthase component I signature 294 307 4.4E-17 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 Pfam PF04715 Anthranilate synthase component I, N terminal region 12 146 6.5E-37 T 11-11-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 98 449 5.1E-118 T 11-11-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 Pfam PF00425 chorismate binding enzyme 192 446 4.0E-100 T 11-11-2016 IPR015890 Chorismate-utilising enzyme, C-terminal Gferi_RS25410 015782eb5fbcb515ae0bc0d655647dd5 456 SUPERFAMILY SSF56322 7 454 3.66E-148 T 11-11-2016 IPR005801 ADC synthase GO:0009058 Gferi_RS00275 9e0e8522985d8025b38c380b8fa5dd47 411 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 7 396 5.6E-147 T 11-11-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Gferi_RS00275 9e0e8522985d8025b38c380b8fa5dd47 411 Pfam PF02601 Exonuclease VII, large subunit 309 394 8.8E-12 T 11-11-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Gferi_RS00275 9e0e8522985d8025b38c380b8fa5dd47 411 Pfam PF02601 Exonuclease VII, large subunit 124 336 9.2E-76 T 11-11-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Gferi_RS00275 9e0e8522985d8025b38c380b8fa5dd47 411 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 3 397 27.604 T 11-11-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Gferi_RS00275 9e0e8522985d8025b38c380b8fa5dd47 411 Pfam PF13742 OB-fold nucleic acid binding domain 6 101 1.1E-29 T 11-11-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 Gferi_RS00275 9e0e8522985d8025b38c380b8fa5dd47 411 Gene3D G3DSA:2.40.50.140 46 102 6.6E-4 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS25775 c9e6201d14567d08e4ea76c0d649c5f6 151 Pfam PF03885 Protein of unknown function (DUF327) 19 150 1.0E-38 T 11-11-2016 IPR005585 Protein of unknown function DUF327 Gferi_RS25775 c9e6201d14567d08e4ea76c0d649c5f6 151 SUPERFAMILY SSF158397 32 151 1.03E-32 T 11-11-2016 Gferi_RS25775 c9e6201d14567d08e4ea76c0d649c5f6 151 Gene3D G3DSA:1.20.120.490 32 151 9.5E-36 T 11-11-2016 IPR024042 Hypothetical protein TM1646-like domain Gferi_RS14250 044210ec634599823774c723f28be580 593 SUPERFAMILY SSF54211 216 436 1.67E-28 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS14250 044210ec634599823774c723f28be580 593 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 137 1.1E-11 T 11-11-2016 Gferi_RS14250 044210ec634599823774c723f28be580 593 PRINTS PR00775 90kDa heat shock protein signature 104 126 2.2E-7 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS14250 044210ec634599823774c723f28be580 593 PRINTS PR00775 90kDa heat shock protein signature 3 23 2.2E-7 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS14250 044210ec634599823774c723f28be580 593 PRINTS PR00775 90kDa heat shock protein signature 173 191 2.2E-7 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS14250 044210ec634599823774c723f28be580 593 Gene3D G3DSA:3.30.565.10 3 210 2.8E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14250 044210ec634599823774c723f28be580 593 PIRSF PIRSF002583 1 592 1.4E-95 T 11-11-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Gferi_RS14250 044210ec634599823774c723f28be580 593 SUPERFAMILY SSF55874 2 196 1.51E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14250 044210ec634599823774c723f28be580 593 Pfam PF00183 Hsp90 protein 258 377 5.1E-9 T 11-11-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Gferi_RS08875 42b4a1ef1b5145f067d0b92dead6ffcc 276 Gene3D G3DSA:3.40.50.10170 1 147 2.0E-48 T 11-11-2016 Gferi_RS08875 42b4a1ef1b5145f067d0b92dead6ffcc 276 SUPERFAMILY SSF82549 1 276 2.62E-81 T 11-11-2016 Gferi_RS08875 42b4a1ef1b5145f067d0b92dead6ffcc 276 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 1 275 3.2E-89 T 11-11-2016 IPR003797 DegV Gferi_RS08875 42b4a1ef1b5145f067d0b92dead6ffcc 276 Pfam PF02645 Uncharacterised protein, DegV family COG1307 1 275 1.2E-79 T 11-11-2016 IPR003797 DegV Gferi_RS08875 42b4a1ef1b5145f067d0b92dead6ffcc 276 Gene3D G3DSA:3.30.1180.10 150 276 4.5E-33 T 11-11-2016 Gferi_RS09470 7b9ae0b4565f50858e75004d2793723d 260 Pfam PF01138 3' exoribonuclease family, domain 1 11 141 2.1E-24 T 11-11-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS09470 7b9ae0b4565f50858e75004d2793723d 260 SUPERFAMILY SSF55666 154 242 8.25E-24 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS09470 7b9ae0b4565f50858e75004d2793723d 260 ProSitePatterns PS01277 Ribonuclease PH signature. 117 129 - T 11-11-2016 IPR018336 Ribonuclease PH, conserved site Gferi_RS09470 7b9ae0b4565f50858e75004d2793723d 260 Pfam PF03725 3' exoribonuclease family, domain 2 159 225 2.0E-13 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS09470 7b9ae0b4565f50858e75004d2793723d 260 Hamap MF_00564 Ribonuclease PH [rph]. 2 238 46.573 T 11-11-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 Gferi_RS09470 7b9ae0b4565f50858e75004d2793723d 260 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 3 237 7.2E-116 T 11-11-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 Gferi_RS09470 7b9ae0b4565f50858e75004d2793723d 260 SUPERFAMILY SSF54211 3 182 3.24E-45 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS09470 7b9ae0b4565f50858e75004d2793723d 260 Gene3D G3DSA:3.30.230.70 3 238 1.1E-32 T 11-11-2016 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Gferi_RS15830 a36fdbf484214c3e75d0c1af71a77b99 359 Pfam PF09925 Predicted membrane protein (DUF2157) 19 155 3.7E-34 T 11-11-2016 IPR018677 Domain of unknown function DUF2157 Gferi_RS17465 37af2cc8476442f2f26d5b33fde82e71 132 SUPERFAMILY SSF56047 3 132 8.5E-50 T 11-11-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17465 37af2cc8476442f2f26d5b33fde82e71 132 Gene3D G3DSA:3.30.1370.30 2 73 1.6E-31 T 11-11-2016 Gferi_RS17465 37af2cc8476442f2f26d5b33fde82e71 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 11-11-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17465 37af2cc8476442f2f26d5b33fde82e71 132 Gene3D G3DSA:3.30.1490.10 76 132 7.8E-31 T 11-11-2016 Gferi_RS17465 37af2cc8476442f2f26d5b33fde82e71 132 Pfam PF00410 Ribosomal protein S8 5 132 1.9E-53 T 11-11-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17465 37af2cc8476442f2f26d5b33fde82e71 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 33.785 T 11-11-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS09910 32dd047d8d1b1acb7a421d175b5367dc 219 Gene3D G3DSA:1.10.3720.10 11 218 2.7E-38 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09910 32dd047d8d1b1acb7a421d175b5367dc 219 SUPERFAMILY SSF161098 11 206 1.7E-44 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09910 32dd047d8d1b1acb7a421d175b5367dc 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 218 7.7E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 153 6.2E-9 T 11-11-2016 Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 PRINTS PR00775 90kDa heat shock protein signature 169 186 2.1E-34 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 PRINTS PR00775 90kDa heat shock protein signature 187 205 2.1E-34 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 PRINTS PR00775 90kDa heat shock protein signature 74 91 2.1E-34 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 PRINTS PR00775 90kDa heat shock protein signature 118 140 2.1E-34 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 PRINTS PR00775 90kDa heat shock protein signature 25 47 2.1E-34 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 PRINTS PR00775 90kDa heat shock protein signature 92 109 2.1E-34 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 PIRSF PIRSF002583 1 627 1.7E-149 T 11-11-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 Pfam PF00183 Hsp90 protein 212 626 2.9E-58 T 11-11-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 SUPERFAMILY SSF54211 233 479 4.1E-65 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 Gene3D G3DSA:3.30.565.10 6 240 4.4E-61 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 SUPERFAMILY SSF110942 523 622 8.76E-9 T 11-11-2016 Gferi_RS12475 5af187f6a7997e117aa382747ace194e 628 SUPERFAMILY SSF55874 4 209 1.64E-55 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 TIGRFAM TIGR02859 spore_sigH: RNA polymerase sigma-H factor 13 210 6.1E-116 T 11-11-2016 IPR014218 RNA polymerase sigma-H type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 Gene3D G3DSA:1.10.10.10 160 206 4.6E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 Gene3D G3DSA:1.10.1740.10 13 127 4.4E-22 T 11-11-2016 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 209 2.2E-25 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 60 73 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 177 204 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 SUPERFAMILY SSF88659 123 210 1.01E-9 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 PIRSF PIRSF002939 3 214 3.1E-111 T 11-11-2016 IPR016371 RNA polymerase sigma-H factor GO:0003677|GO:0006351|GO:0016987 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 Pfam PF08281 Sigma-70, region 4 170 205 1.8E-9 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 Pfam PF04542 Sigma-70 region 2 36 105 8.1E-14 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS17295 a8e5f3ebe3293c32dcaee4347515198e 214 SUPERFAMILY SSF88946 17 105 1.44E-23 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS09635 2a092532e18f98a71a79bc309b00889a 262 Gene3D G3DSA:3.40.50.620 1 260 2.9E-95 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS09635 2a092532e18f98a71a79bc309b00889a 262 Pfam PF01012 Electron transfer flavoprotein domain 23 206 1.2E-48 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS09635 2a092532e18f98a71a79bc309b00889a 262 SUPERFAMILY SSF52402 1 258 1.26E-80 T 11-11-2016 Gferi_RS09635 2a092532e18f98a71a79bc309b00889a 262 SMART SM00893 22 214 1.6E-67 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS09635 2a092532e18f98a71a79bc309b00889a 262 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 157 177 - T 11-11-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105 Gferi_RS09635 2a092532e18f98a71a79bc309b00889a 262 PIRSF PIRSF000090 1 262 4.7E-95 T 11-11-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105 Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Pfam PF13361 UvrD-like helicase C-terminal domain 450 867 2.6E-28 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 439 2.9E-80 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Gene3D G3DSA:3.40.50.300 343 441 9.4E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Gene3D G3DSA:3.40.50.300 3 160 9.4E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Gene3D G3DSA:3.40.50.300 765 918 3.1E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Gene3D G3DSA:3.40.50.300 454 599 3.1E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Gene3D G3DSA:1.10.486.10 606 751 3.6E-25 T 11-11-2016 Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Hamap MF_01451 ATP-dependent helicase/nuclease subunit A [addA]. 1 1201 18.803 T 11-11-2016 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 TIGRFAM TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit 3 1200 0.0 T 11-11-2016 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 SUPERFAMILY SSF52540 846 875 2.04E-118 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 SUPERFAMILY SSF52540 2 172 2.04E-118 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 SUPERFAMILY SSF52540 333 479 2.04E-118 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 SUPERFAMILY SSF52540 540 806 2.04E-118 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1008 1196 2.7E-7 T 11-11-2016 Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 SUPERFAMILY SSF52980 993 1195 4.13E-33 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Gferi_RS20330 68562f444b565924c4f48ab36a36629d 1201 Gene3D G3DSA:3.90.320.10 1004 1199 1.4E-25 T 11-11-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 Gferi_RS16385 33eb730c28f8a99c8d52981ee61a86f1 465 SUPERFAMILY SSF103473 1 448 7.85E-26 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS16385 33eb730c28f8a99c8d52981ee61a86f1 465 Gene3D G3DSA:1.20.1250.20 240 448 5.9E-10 T 11-11-2016 Gferi_RS16385 33eb730c28f8a99c8d52981ee61a86f1 465 Gene3D G3DSA:1.20.1250.20 18 207 1.9E-8 T 11-11-2016 Gferi_RS16385 33eb730c28f8a99c8d52981ee61a86f1 465 Pfam PF13347 MFS/sugar transport protein 12 446 8.9E-76 T 11-11-2016 Gferi_RS07490 7a9d9d11472960a5a2a550d5adb097b8 364 Gene3D G3DSA:3.40.50.1100 131 361 1.8E-48 T 11-11-2016 Gferi_RS07490 7a9d9d11472960a5a2a550d5adb097b8 364 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 66 356 5.6E-63 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS07490 7a9d9d11472960a5a2a550d5adb097b8 364 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 86 99 - T 11-11-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Gferi_RS07490 7a9d9d11472960a5a2a550d5adb097b8 364 SUPERFAMILY SSF53686 3 361 3.54E-81 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 SUPERFAMILY SSF52540 1 240 1.05E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 Pfam PF00005 ABC transporter 21 169 1.9E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 Pfam PF09383 NIL domain 256 327 4.0E-20 T 11-11-2016 IPR018449 NIL domain Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 Gene3D G3DSA:3.40.50.300 1 240 3.6E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 SUPERFAMILY SSF55021 241 330 5.38E-20 T 11-11-2016 Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 SMART SM00382 30 217 1.4E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 SMART SM00930 253 328 5.4E-24 T 11-11-2016 IPR018449 NIL domain Gferi_RS09905 9d6ad25a9923c5154d0ebba77bf64cbd 331 Gene3D G3DSA:3.30.70.260 241 330 4.8E-26 T 11-11-2016 Gferi_RS24955 7e36f95c5e18894eabcc88abea928845 741 Pfam PF11369 Protein of unknown function (DUF3160) 98 718 8.0E-185 T 11-11-2016 IPR022601 Protein of unknown function DUF3160 Gferi_RS24955 7e36f95c5e18894eabcc88abea928845 741 SMART SM01325 94 719 8.8E-183 T 11-11-2016 IPR022601 Protein of unknown function DUF3160 Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 SMART SM00382 282 476 2.8E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 SMART SM00382 33 223 1.5E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 SUPERFAMILY SSF52540 7 234 1.44E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 Gene3D G3DSA:3.40.50.300 6 238 8.0E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 Gene3D G3DSA:3.40.50.300 259 488 2.9E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 Pfam PF00005 ABC transporter 274 427 2.1E-20 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 Pfam PF00005 ABC transporter 24 174 2.1E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS08365 a74ddc3946af84dec2703db64c7ed42d 499 SUPERFAMILY SSF52540 247 479 2.09E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02700 49f336b6c5e51c38c870c0b14ed88d52 307 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 292 2.4E-71 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS02700 49f336b6c5e51c38c870c0b14ed88d52 307 Gene3D G3DSA:3.40.50.1100 135 305 5.4E-76 T 11-11-2016 Gferi_RS02700 49f336b6c5e51c38c870c0b14ed88d52 307 Gene3D G3DSA:3.40.50.1100 38 134 4.4E-44 T 11-11-2016 Gferi_RS02700 49f336b6c5e51c38c870c0b14ed88d52 307 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 304 3.4E-136 T 11-11-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Gferi_RS02700 49f336b6c5e51c38c870c0b14ed88d52 307 SUPERFAMILY SSF53686 1 305 2.88E-104 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS02700 49f336b6c5e51c38c870c0b14ed88d52 307 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 11-11-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 Gferi_RS02700 49f336b6c5e51c38c870c0b14ed88d52 307 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 304 1.1E-144 T 11-11-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Gferi_RS04715 d8513bd6dff9ba50299328293e54f510 179 SMART SM00382 35 178 5.9E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04715 d8513bd6dff9ba50299328293e54f510 179 SUPERFAMILY SSF52540 6 177 1.1E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04715 d8513bd6dff9ba50299328293e54f510 179 Pfam PF00005 ABC transporter 27 165 3.7E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS04715 d8513bd6dff9ba50299328293e54f510 179 Gene3D G3DSA:3.40.50.300 4 176 1.7E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04715 d8513bd6dff9ba50299328293e54f510 179 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS08605 6298f855820f0f36cec3660fed31bbc8 539 PIRSF PIRSF005690 30 522 4.8E-169 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS08605 6298f855820f0f36cec3660fed31bbc8 539 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 45 511 3.3E-183 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS21715 e89b66d213b310f3c2ddef9a483f1554 293 Gene3D G3DSA:1.10.490.50 204 291 1.1E-6 T 11-11-2016 IPR012925 TipAS antibiotic-recognition domain Gferi_RS21715 e89b66d213b310f3c2ddef9a483f1554 293 Gene3D G3DSA:1.10.1660.10 3 109 3.2E-28 T 11-11-2016 Gferi_RS21715 e89b66d213b310f3c2ddef9a483f1554 293 Pfam PF07739 TipAS antibiotic-recognition domain 160 288 1.2E-17 T 11-11-2016 IPR012925 TipAS antibiotic-recognition domain Gferi_RS21715 e89b66d213b310f3c2ddef9a483f1554 293 SUPERFAMILY SSF46955 3 112 1.47E-26 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS21715 e89b66d213b310f3c2ddef9a483f1554 293 SUPERFAMILY SSF89082 204 291 1.96E-7 T 11-11-2016 IPR012925 TipAS antibiotic-recognition domain Gferi_RS21715 e89b66d213b310f3c2ddef9a483f1554 293 Pfam PF13411 MerR HTH family regulatory protein 3 70 1.1E-17 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS21715 e89b66d213b310f3c2ddef9a483f1554 293 SMART SM00422 3 71 2.2E-22 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 10 622 4.9E-274 T 11-11-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 7.3E-6 T 11-11-2016 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 163 7.3E-6 T 11-11-2016 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 Gene3D G3DSA:3.50.50.60 10 233 4.3E-34 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 SUPERFAMILY SSF51905 100 263 2.39E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 SUPERFAMILY SSF51905 10 69 2.39E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 Pfam PF01134 Glucose inhibited division protein A 11 401 1.6E-166 T 11-11-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 SMART SM01228 546 617 1.3E-40 T 11-11-2016 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 8 624 42.633 T 11-11-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 Pfam PF13932 GidA associated domain 403 616 4.8E-73 T 11-11-2016 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 370 393 - T 11-11-2016 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Gferi_RS13295 5465ca9143c703c013f3f0cd46e374f7 631 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 275 289 - T 11-11-2016 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Gferi_RS24130 9a06af7f52bebb51f674f67207978724 483 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 448 1.2E-146 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS24130 9a06af7f52bebb51f674f67207978724 483 Pfam PF01235 Sodium:alanine symporter family 51 460 1.8E-161 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS24130 9a06af7f52bebb51f674f67207978724 483 PRINTS PR00175 Sodium/alanine symporter signature 86 108 6.2E-60 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS24130 9a06af7f52bebb51f674f67207978724 483 PRINTS PR00175 Sodium/alanine symporter signature 295 313 6.2E-60 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS24130 9a06af7f52bebb51f674f67207978724 483 PRINTS PR00175 Sodium/alanine symporter signature 353 375 6.2E-60 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS24130 9a06af7f52bebb51f674f67207978724 483 PRINTS PR00175 Sodium/alanine symporter signature 176 194 6.2E-60 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS24130 9a06af7f52bebb51f674f67207978724 483 PRINTS PR00175 Sodium/alanine symporter signature 417 437 6.2E-60 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS24130 9a06af7f52bebb51f674f67207978724 483 PRINTS PR00175 Sodium/alanine symporter signature 204 223 6.2E-60 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Gferi_RS17590 240b56fce706b93b4524a3a36e57f8bb 146 Pfam PF09537 Domain of unknown function (DUF2383) 6 111 6.7E-18 T 11-11-2016 IPR019052 Domain of unknown function DUF2383 Gferi_RS17590 240b56fce706b93b4524a3a36e57f8bb 146 SUPERFAMILY SSF47240 3 143 8.39E-8 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS17590 240b56fce706b93b4524a3a36e57f8bb 146 Gene3D G3DSA:1.20.1260.10 7 143 1.3E-13 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS26425 9b7abb7bf44a37eac647d7255e67c778 223 Gene3D G3DSA:3.30.1330.90 14 133 1.2E-26 T 11-11-2016 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Gferi_RS26425 9b7abb7bf44a37eac647d7255e67c778 223 SUPERFAMILY SSF143548 19 137 1.12E-29 T 11-11-2016 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 Gferi_RS26425 9b7abb7bf44a37eac647d7255e67c778 223 PIRSF PIRSF036692 1 222 8.5E-94 T 11-11-2016 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Gferi_RS26425 9b7abb7bf44a37eac647d7255e67c778 223 Pfam PF01842 ACT domain 150 211 1.9E-8 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 Gferi_RS26425 9b7abb7bf44a37eac647d7255e67c778 223 Gene3D G3DSA:3.30.70.260 135 210 1.3E-17 T 11-11-2016 Gferi_RS26425 9b7abb7bf44a37eac647d7255e67c778 223 TIGRFAM TIGR00719 sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit 1 203 9.8E-72 T 11-11-2016 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Gferi_RS26425 9b7abb7bf44a37eac647d7255e67c778 223 Pfam PF03315 Serine dehydratase beta chain 15 81 2.6E-12 T 11-11-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Gferi_RS26425 9b7abb7bf44a37eac647d7255e67c778 223 SUPERFAMILY SSF55021 137 210 5.34E-15 T 11-11-2016 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 Pfam PF04542 Sigma-70 region 2 72 141 1.3E-18 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 PRINTS PR00046 Major sigma-70 factor signature 230 241 1.2E-11 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 PRINTS PR00046 Major sigma-70 factor signature 96 109 1.2E-11 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 PRINTS PR00046 Major sigma-70 factor signature 215 230 1.2E-11 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 PRINTS PR00046 Major sigma-70 factor signature 194 206 1.2E-11 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 Gene3D G3DSA:1.10.601.10 47 140 3.6E-29 T 11-11-2016 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 PIRSF PIRSF000770 16 249 7.3E-71 T 11-11-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 Pfam PF04545 Sigma-70, region 4 190 243 1.7E-16 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 215 241 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 72 244 1.4E-34 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 SUPERFAMILY SSF88946 37 141 6.75E-34 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 SUPERFAMILY SSF88659 153 247 1.94E-22 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 Gene3D G3DSA:1.10.10.10 185 246 5.1E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 96 109 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01910 9561e93391f8ff7ad3adb575661014c9 249 TIGRFAM TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor 20 248 1.7E-125 T 11-11-2016 IPR014200 RNA polymerase sigma-E type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19605 1b50482c56113bb7e1db023c505628aa 78 Gene3D G3DSA:3.40.50.1820 5 75 5.2E-7 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS19605 1b50482c56113bb7e1db023c505628aa 78 SUPERFAMILY SSF53474 11 74 2.64E-6 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 6 158 1.7E-47 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 SUPERFAMILY SSF50891 4 159 3.36E-53 T 11-11-2016 IPR029000 Cyclophilin-like domain Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 PIRSF PIRSF001467 2 164 4.1E-40 T 11-11-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 41 58 - T 11-11-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 Gene3D G3DSA:2.40.100.10 2 159 1.0E-57 T 11-11-2016 IPR029000 Cyclophilin-like domain Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 46 58 1.3E-18 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 1.3E-18 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 118 1.3E-18 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS24010 79a28295148fd64682e63652d91a568d 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 20 35 1.3E-18 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 Gferi_RS11975 36865f523903e9b41cedeb79fa7a65be 323 Gene3D G3DSA:3.30.420.40 1 66 2.8E-4 T 11-11-2016 Gferi_RS11975 36865f523903e9b41cedeb79fa7a65be 323 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 5 256 6.5E-61 T 11-11-2016 IPR008275 CoA enzyme activase Gferi_RS11975 36865f523903e9b41cedeb79fa7a65be 323 SUPERFAMILY SSF53067 5 256 1.7E-40 T 11-11-2016 Gferi_RS11975 36865f523903e9b41cedeb79fa7a65be 323 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 6 256 1.0E-44 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Gferi_RS11975 36865f523903e9b41cedeb79fa7a65be 323 Gene3D G3DSA:3.30.420.40 101 239 4.7E-51 T 11-11-2016 Gferi_RS03330 d7f4b070c041422f6e4753d5ba932dc1 176 Pfam PF09918 Uncharacterized protein containing a ferredoxin domain (DUF2148) 108 175 9.7E-28 T 11-11-2016 IPR019224 Protein of unknown function DUF2148 Gferi_RS03330 d7f4b070c041422f6e4753d5ba932dc1 176 Gene3D G3DSA:3.40.109.10 18 141 6.7E-5 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS13375 abbde004c635612cce1afaf3d2a3024e 200 SUPERFAMILY SSF53163 11 194 4.71E-52 T 11-11-2016 IPR023430 Peptidase HybD-like domain Gferi_RS13375 abbde004c635612cce1afaf3d2a3024e 200 TIGRFAM TIGR02841 spore_YyaC: putative sporulation protein YyaC 40 180 1.2E-65 T 11-11-2016 IPR009665 Protein of unknown function DUF1256 Gferi_RS13375 abbde004c635612cce1afaf3d2a3024e 200 Pfam PF06866 Protein of unknown function (DUF1256) 13 179 8.6E-60 T 11-11-2016 IPR009665 Protein of unknown function DUF1256 Gferi_RS11385 b17190b2cb0936f92c88171d17ff5dab 977 Pfam PF04932 O-Antigen ligase 210 544 2.4E-23 T 11-11-2016 IPR007016 O-antigen ligase-related Gferi_RS11385 b17190b2cb0936f92c88171d17ff5dab 977 SUPERFAMILY SSF48452 648 787 1.96E-14 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS11385 b17190b2cb0936f92c88171d17ff5dab 977 Gene3D G3DSA:1.25.40.10 647 787 3.9E-18 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS11385 b17190b2cb0936f92c88171d17ff5dab 977 SMART SM00028 758 791 16.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS11385 b17190b2cb0936f92c88171d17ff5dab 977 SMART SM00028 717 750 23.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS11385 b17190b2cb0936f92c88171d17ff5dab 977 SMART SM00028 683 716 52.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS11385 b17190b2cb0936f92c88171d17ff5dab 977 SMART SM00028 642 675 21.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS20845 cf7c8ee003d29de9eca9b4a81eae2ccb 277 Pfam PF01226 Formate/nitrite transporter 10 250 3.1E-77 T 11-11-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 Gferi_RS20845 cf7c8ee003d29de9eca9b4a81eae2ccb 277 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 79 88 - T 11-11-2016 IPR024002 Formate/nitrite transporter, conserved site Gferi_RS20845 cf7c8ee003d29de9eca9b4a81eae2ccb 277 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 22 255 1.3E-69 T 11-11-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 Gferi_RS20845 cf7c8ee003d29de9eca9b4a81eae2ccb 277 Gene3D G3DSA:1.20.1080.10 25 255 1.9E-79 T 11-11-2016 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Gferi_RS06950 93cdfd22338027fc1e95987afcfe84a8 149 Pfam PF13302 Acetyltransferase (GNAT) domain 9 132 6.6E-12 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS06950 93cdfd22338027fc1e95987afcfe84a8 149 SUPERFAMILY SSF55729 3 139 1.61E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS06950 93cdfd22338027fc1e95987afcfe84a8 149 Gene3D G3DSA:3.40.630.30 7 133 4.1E-20 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS24365 7d6ac3870042e7cbdd9f58b98b56f331 543 SUPERFAMILY SSF109755 327 538 1.15E-53 T 11-11-2016 Gferi_RS24365 7d6ac3870042e7cbdd9f58b98b56f331 543 Gene3D G3DSA:1.20.58.220 444 540 4.0E-24 T 11-11-2016 Gferi_RS24365 7d6ac3870042e7cbdd9f58b98b56f331 543 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 314 1.1E-75 T 11-11-2016 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Gferi_RS24365 7d6ac3870042e7cbdd9f58b98b56f331 543 Pfam PF02690 Na+/Pi-cotransporter 142 265 6.4E-20 T 11-11-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Gferi_RS24365 7d6ac3870042e7cbdd9f58b98b56f331 543 Pfam PF02690 Na+/Pi-cotransporter 13 148 8.7E-55 T 11-11-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Gferi_RS24365 7d6ac3870042e7cbdd9f58b98b56f331 543 Pfam PF01895 PhoU domain 347 432 7.3E-14 T 11-11-2016 IPR026022 PhoU domain Gferi_RS24365 7d6ac3870042e7cbdd9f58b98b56f331 543 Pfam PF01895 PhoU domain 454 533 3.3E-17 T 11-11-2016 IPR026022 PhoU domain Gferi_RS24365 7d6ac3870042e7cbdd9f58b98b56f331 543 Gene3D G3DSA:1.20.58.220 329 440 1.5E-23 T 11-11-2016 Gferi_RS04275 74ed42858eae96516c267a6a8ffdc260 216 Gene3D G3DSA:2.40.50.140 100 213 5.1E-30 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS04275 74ed42858eae96516c267a6a8ffdc260 216 Pfam PF00436 Single-strand binding protein family 110 205 4.5E-17 T 11-11-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Gferi_RS04275 74ed42858eae96516c267a6a8ffdc260 216 SUPERFAMILY SSF50249 8 208 6.86E-36 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS23960 5757ed6ab0b1db47b4575367695e7fc6 232 SUPERFAMILY SSF52540 3 218 1.46E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23960 5757ed6ab0b1db47b4575367695e7fc6 232 Pfam PF00005 ABC transporter 22 165 2.4E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS23960 5757ed6ab0b1db47b4575367695e7fc6 232 SMART SM00382 31 214 1.5E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS23960 5757ed6ab0b1db47b4575367695e7fc6 232 Gene3D G3DSA:3.40.50.300 2 218 2.1E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23960 5757ed6ab0b1db47b4575367695e7fc6 232 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS15515 6f3f22836de9d392e9054645472cd225 297 Gene3D G3DSA:3.40.50.10490 5 248 6.8E-83 T 11-11-2016 Gferi_RS15515 6f3f22836de9d392e9054645472cd225 297 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 11-11-2016 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 Gferi_RS15515 6f3f22836de9d392e9054645472cd225 297 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 39.572 T 11-11-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 Gferi_RS15515 6f3f22836de9d392e9054645472cd225 297 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 295 4.7E-115 T 11-11-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 Gferi_RS15515 6f3f22836de9d392e9054645472cd225 297 Pfam PF13580 SIS domain 36 165 9.7E-12 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS15515 6f3f22836de9d392e9054645472cd225 297 SUPERFAMILY SSF53697 6 246 2.43E-66 T 11-11-2016 Gferi_RS17780 d8137e066b73e9c3c279f08b27ddb7aa 181 SUPERFAMILY SSF55729 3 170 9.33E-22 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS17780 d8137e066b73e9c3c279f08b27ddb7aa 181 Gene3D G3DSA:3.40.630.30 2 169 3.1E-21 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS17780 d8137e066b73e9c3c279f08b27ddb7aa 181 Pfam PF13302 Acetyltransferase (GNAT) domain 38 148 1.1E-11 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS12520 216396d6490532bbf6de4a6b657f11c6 178 Pfam PF12822 Protein of unknown function (DUF3816) 7 161 3.2E-13 T 11-11-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 Hamap MF_00577 Urocanate hydratase [hutU]. 59 658 42.743 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 SUPERFAMILY SSF111326 88 646 4.05E-225 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 ProSitePatterns PS01233 Urocanase signature. 538 553 - T 11-11-2016 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 Gene3D G3DSA:3.40.50.10730 218 440 5.7E-83 T 11-11-2016 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 Gene3D G3DSA:3.40.1770.10 83 217 2.8E-149 T 11-11-2016 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 Gene3D G3DSA:3.40.1770.10 452 649 2.8E-149 T 11-11-2016 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 Pfam PF01175 Urocanase 88 640 2.1E-237 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 TIGRFAM TIGR01228 hutU: urocanate hydratase 102 640 4.8E-132 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10450 c69cb0eb97be8d4534b322dc55e6543b 675 PIRSF PIRSF001423 80 662 8.2E-179 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS02015 66915a7e645c1c7d85e55959a14431b4 401 Gene3D G3DSA:3.40.50.1400 128 172 2.6E-8 T 11-11-2016 Gferi_RS02015 66915a7e645c1c7d85e55959a14431b4 401 Gene3D G3DSA:3.40.50.1400 306 389 2.6E-8 T 11-11-2016 Gferi_RS02015 66915a7e645c1c7d85e55959a14431b4 401 Pfam PF00762 Ferrochelatase 123 389 2.0E-8 T 11-11-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 Gferi_RS02015 66915a7e645c1c7d85e55959a14431b4 401 SUPERFAMILY SSF53800 96 389 1.28E-12 T 11-11-2016 Gferi_RS11770 3dab5408b7e681bd5929c6b79986ab1a 250 Pfam PF09323 Domain of unknown function (DUF1980) 12 120 3.3E-21 T 11-11-2016 IPR015402 Protein of unknown function DUF1980 Gferi_RS11770 3dab5408b7e681bd5929c6b79986ab1a 250 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 28 247 3.0E-52 T 11-11-2016 IPR015402 Protein of unknown function DUF1980 Gferi_RS17260 d987b29f5ecba301ed9fbe07d898b13d 214 Gene3D G3DSA:1.10.3130.10 2 60 5.3E-26 T 11-11-2016 Gferi_RS17260 d987b29f5ecba301ed9fbe07d898b13d 214 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 2 162 5.1E-77 T 11-11-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 Gferi_RS17260 d987b29f5ecba301ed9fbe07d898b13d 214 PIRSF PIRSF000441 1 207 1.0E-82 T 11-11-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 Gferi_RS17260 d987b29f5ecba301ed9fbe07d898b13d 214 Pfam PF06426 Serine acetyltransferase, N-terminal 2 32 1.4E-5 T 11-11-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 Gferi_RS17260 d987b29f5ecba301ed9fbe07d898b13d 214 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 114 148 9.9E-10 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS17260 d987b29f5ecba301ed9fbe07d898b13d 214 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 68 105 4.7E-5 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS17260 d987b29f5ecba301ed9fbe07d898b13d 214 SUPERFAMILY SSF51161 4 165 3.05E-54 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS17260 d987b29f5ecba301ed9fbe07d898b13d 214 Gene3D G3DSA:2.160.10.10 61 207 1.1E-37 T 11-11-2016 Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 SMART SM00382 159 340 3.7E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 347 356 - T 11-11-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 Gene3D G3DSA:3.40.50.300 94 358 4.0E-98 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 89 1.1E-7 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 356 2.5E-76 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 19 436 1.5E-183 T 11-11-2016 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 SUPERFAMILY SSF52540 94 362 3.74E-100 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 TIGRFAM TIGR03497 FliI_clade2: flagellar protein export ATPase FliI 23 435 1.0E-208 T 11-11-2016 IPR022425 Flagellar export ATPase FliI, clade 2 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS00970 a78ed6037697ecb8e28ecebda2ff2882 437 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 6 436 3.4E-200 T 11-11-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 SUPERFAMILY SSF46689 5 53 3.85E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 57 99 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 Gene3D G3DSA:1.10.10.60 4 56 3.1E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 Gene3D G3DSA:1.10.10.60 57 117 6.0E-20 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 SUPERFAMILY SSF46689 56 113 2.02E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 Pfam PF12833 Helix-turn-helix domain 28 104 3.1E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 SMART SM00342 20 103 1.3E-24 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 72 87 4.1E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS19020 144e846818f7f1d243282b9fce3bf815 126 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 87 103 4.1E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS19535 c9d2529f13f9fffb1573c38a89858c39 340 Gene3D G3DSA:3.90.1200.10 105 317 6.8E-45 T 11-11-2016 Gferi_RS19535 c9d2529f13f9fffb1573c38a89858c39 340 Pfam PF01636 Phosphotransferase enzyme family 40 249 6.2E-11 T 11-11-2016 IPR002575 Aminoglycoside phosphotransferase Gferi_RS19535 c9d2529f13f9fffb1573c38a89858c39 340 SUPERFAMILY SSF56112 35 317 6.56E-36 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS19535 c9d2529f13f9fffb1573c38a89858c39 340 Gene3D G3DSA:3.30.200.20 9 104 2.8E-21 T 11-11-2016 Gferi_RS19535 c9d2529f13f9fffb1573c38a89858c39 340 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 30 335 4.2E-85 T 11-11-2016 IPR014255 Spore coat protein CotS Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 9.4E-85 T 11-11-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 SUPERFAMILY SSF52540 1 212 6.37E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 Pfam PF00406 Adenylate kinase 5 190 2.0E-60 T 11-11-2016 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 Gene3D G3DSA:3.40.50.300 1 211 2.1E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 PRINTS PR00094 Adenylate kinase signature 4 17 1.9E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 PRINTS PR00094 Adenylate kinase signature 160 175 1.9E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 PRINTS PR00094 Adenylate kinase signature 32 46 1.9E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 PRINTS PR00094 Adenylate kinase signature 81 97 1.9E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 PRINTS PR00094 Adenylate kinase signature 177 191 1.9E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 Pfam PF05191 Adenylate kinase, active site lid 127 162 4.2E-17 T 11-11-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-11-2016 Gferi_RS17500 8fcbf0c139694433e8f7ce9c06ea1579 214 Hamap MF_00235 Adenylate kinase [adk]. 1 213 53.257 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Gferi_RS00625 72226211d60cf732767e405975deff32 156 Pfam PF02631 RecX family 29 147 3.8E-28 T 11-11-2016 IPR003783 Regulatory protein RecX GO:0006282 Gferi_RS00625 72226211d60cf732767e405975deff32 156 Hamap MF_01114 Regulatory protein RecX [recX]. 1 153 14.875 T 11-11-2016 IPR003783 Regulatory protein RecX GO:0006282 Gferi_RS00625 72226211d60cf732767e405975deff32 156 Gene3D G3DSA:1.10.10.10 101 147 1.5E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00625 72226211d60cf732767e405975deff32 156 Gene3D G3DSA:1.10.10.10 6 52 5.2E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 Gene3D G3DSA:1.10.274.10 23 127 1.2E-36 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 Pfam PF05524 PEP-utilising enzyme, N-terminal 3 120 3.5E-34 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 SUPERFAMILY SSF47831 23 137 1.31E-34 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 Pfam PF00391 PEP-utilising enzyme, mobile domain 147 219 5.3E-26 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 PIRSF PIRSF000732 1 563 1.7E-229 T 11-11-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 3 559 6.0E-231 T 11-11-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 SUPERFAMILY SSF52009 119 239 4.84E-39 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 178 189 - T 11-11-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 246 534 2.9E-123 T 11-11-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 Gene3D G3DSA:3.50.30.10 128 250 1.2E-45 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 458 473 6.6E-30 T 11-11-2016 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 287 306 6.6E-30 T 11-11-2016 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 441 456 6.6E-30 T 11-11-2016 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 494 506 6.6E-30 T 11-11-2016 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 SUPERFAMILY SSF51621 246 543 1.44E-112 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS12920 2c319d6b18638b10824121dec7d0f64b 563 Gene3D G3DSA:3.20.20.60 251 562 1.2E-119 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 SUPERFAMILY SSF51735 4 196 1.31E-56 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 7 483 3.3E-180 T 11-11-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 183 189 - T 11-11-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 7 483 77.483 T 11-11-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 PIRSF PIRSF000110 2 484 1.5E-171 T 11-11-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 11 193 8.5E-59 T 11-11-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 Gene3D G3DSA:3.30.360.10 193 482 5.6E-113 T 11-11-2016 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 243 259 2.0E-48 T 11-11-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 324 350 2.0E-48 T 11-11-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 149 162 2.0E-48 T 11-11-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 173 201 2.0E-48 T 11-11-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 225 242 2.0E-48 T 11-11-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 SUPERFAMILY SSF55347 188 482 4.9E-106 T 11-11-2016 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 195 481 1.5E-108 T 11-11-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 Gferi_RS15345 865d63129dfaf69b267e26b513609378 484 Gene3D G3DSA:3.40.50.720 6 192 2.1E-65 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS17455 f3571a6a7175856f69ac7645b7b58642 163 Pfam PF00281 Ribosomal protein L5 8 64 1.1E-26 T 11-11-2016 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17455 f3571a6a7175856f69ac7645b7b58642 163 PIRSF PIRSF002161 1 163 4.8E-63 T 11-11-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17455 f3571a6a7175856f69ac7645b7b58642 163 Pfam PF00673 ribosomal L5P family C-terminus 68 161 3.9E-42 T 11-11-2016 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17455 f3571a6a7175856f69ac7645b7b58642 163 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 163 38.682 T 11-11-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17455 f3571a6a7175856f69ac7645b7b58642 163 SUPERFAMILY SSF55282 1 162 4.71E-72 T 11-11-2016 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17455 f3571a6a7175856f69ac7645b7b58642 163 ProSitePatterns PS00358 Ribosomal protein L5 signature. 41 57 - T 11-11-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17455 f3571a6a7175856f69ac7645b7b58642 163 Gene3D G3DSA:3.30.1440.10 1 162 1.7E-72 T 11-11-2016 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS22120 1fe8e074e8131941a2fba71248879ca6 222 SUPERFAMILY SSF52540 8 218 1.54E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22120 1fe8e074e8131941a2fba71248879ca6 222 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22120 1fe8e074e8131941a2fba71248879ca6 222 SMART SM00382 30 216 2.0E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22120 1fe8e074e8131941a2fba71248879ca6 222 Pfam PF00005 ABC transporter 21 167 3.7E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22120 1fe8e074e8131941a2fba71248879ca6 222 Gene3D G3DSA:3.40.50.300 3 218 2.9E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04250 05fa6338067fea2e92a3174a8861f6fc 176 SUPERFAMILY SSF53271 1 174 1.7E-53 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS04250 05fa6338067fea2e92a3174a8861f6fc 176 Pfam PF00156 Phosphoribosyl transferase domain 12 159 1.6E-24 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS04250 05fa6338067fea2e92a3174a8861f6fc 176 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 10 173 4.2E-60 T 11-11-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 Gferi_RS04250 05fa6338067fea2e92a3174a8861f6fc 176 Gene3D G3DSA:3.40.50.2020 2 173 2.5E-73 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS15945 f75bd0f100b3b1c98d04b25deee882d9 241 SMART SM00850 139 238 1.0E-25 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS15945 f75bd0f100b3b1c98d04b25deee882d9 241 Gene3D G3DSA:3.40.50.2300 1 127 1.6E-25 T 11-11-2016 Gferi_RS15945 f75bd0f100b3b1c98d04b25deee882d9 241 Pfam PF04397 LytTr DNA-binding domain 141 237 1.9E-20 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS15945 f75bd0f100b3b1c98d04b25deee882d9 241 Gene3D G3DSA:2.40.50.40 133 199 3.1E-16 T 11-11-2016 Gferi_RS15945 f75bd0f100b3b1c98d04b25deee882d9 241 Pfam PF00072 Response regulator receiver domain 4 113 5.1E-19 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15945 f75bd0f100b3b1c98d04b25deee882d9 241 SUPERFAMILY SSF52172 1 127 5.41E-24 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS15945 f75bd0f100b3b1c98d04b25deee882d9 241 SMART SM00448 2 116 8.0E-20 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS02905 4319e4dc7870233a14b9973dd1b24ad8 177 SUPERFAMILY SSF55729 6 174 7.89E-31 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02905 4319e4dc7870233a14b9973dd1b24ad8 177 Gene3D G3DSA:3.40.630.30 9 174 1.6E-32 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02905 4319e4dc7870233a14b9973dd1b24ad8 177 Pfam PF00583 Acetyltransferase (GNAT) family 70 150 6.5E-15 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS12990 b31d8e47286fcfb210c5ac20ecc49adb 324 Gene3D G3DSA:3.40.50.300 5 255 1.8E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12990 b31d8e47286fcfb210c5ac20ecc49adb 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 234 298 1.1E-13 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS12990 b31d8e47286fcfb210c5ac20ecc49adb 324 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS12990 b31d8e47286fcfb210c5ac20ecc49adb 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 317 1.5E-19 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS12990 b31d8e47286fcfb210c5ac20ecc49adb 324 SUPERFAMILY SSF52540 6 254 1.97E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12990 b31d8e47286fcfb210c5ac20ecc49adb 324 SMART SM00382 35 240 3.9E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS12990 b31d8e47286fcfb210c5ac20ecc49adb 324 Pfam PF00005 ABC transporter 27 183 3.3E-26 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS21800 10a72eda2bea42245eea5f34d22ed678 64 Pfam PF02599 Global regulator protein family 3 50 4.8E-12 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Gferi_RS21800 10a72eda2bea42245eea5f34d22ed678 64 SUPERFAMILY SSF117130 3 50 2.09E-10 T 11-11-2016 Gferi_RS21800 10a72eda2bea42245eea5f34d22ed678 64 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 7 47 3.0E-4 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 Gferi_RS25730 bb8d89ee96f05f806fed7b87cb0674c7 318 Gene3D G3DSA:3.40.50.720 1 207 8.3E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25730 bb8d89ee96f05f806fed7b87cb0674c7 318 Gene3D G3DSA:3.90.25.10 208 309 3.8E-7 T 11-11-2016 Gferi_RS25730 bb8d89ee96f05f806fed7b87cb0674c7 318 SUPERFAMILY SSF51735 1 316 3.31E-60 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25730 bb8d89ee96f05f806fed7b87cb0674c7 318 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 241 1.9E-27 T 11-11-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 Gferi_RS14420 c5058ae4cdb3a52dae4a4449a19f7d29 394 Gene3D G3DSA:1.20.1250.20 18 192 2.0E-19 T 11-11-2016 Gferi_RS14420 c5058ae4cdb3a52dae4a4449a19f7d29 394 Gene3D G3DSA:1.20.1250.20 196 388 2.4E-13 T 11-11-2016 Gferi_RS14420 c5058ae4cdb3a52dae4a4449a19f7d29 394 Pfam PF07690 Major Facilitator Superfamily 19 350 7.9E-26 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS14420 c5058ae4cdb3a52dae4a4449a19f7d29 394 SUPERFAMILY SSF103473 18 389 2.35E-45 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS18330 66c305ee5862481492de834cdcf4e324 273 SUPERFAMILY SSF53067 141 269 1.86E-24 T 11-11-2016 Gferi_RS18330 66c305ee5862481492de834cdcf4e324 273 TIGRFAM TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein 32 269 1.7E-107 T 11-11-2016 IPR013366 Ethanolamine utilisation EutJ Gferi_RS18330 66c305ee5862481492de834cdcf4e324 273 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 143 156 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Gferi_RS18330 66c305ee5862481492de834cdcf4e324 273 Pfam PF00012 Hsp70 protein 75 200 2.5E-10 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Gferi_RS18330 66c305ee5862481492de834cdcf4e324 273 SUPERFAMILY SSF53067 30 133 2.49E-12 T 11-11-2016 Gferi_RS18330 66c305ee5862481492de834cdcf4e324 273 Gene3D G3DSA:3.30.420.40 9 149 7.0E-28 T 11-11-2016 Gferi_RS18330 66c305ee5862481492de834cdcf4e324 273 Gene3D G3DSA:3.30.420.40 150 253 1.2E-37 T 11-11-2016 Gferi_RS12195 c416e57d72712d1df78dfbf8641a3c52 326 Pfam PF13177 DNA polymerase III, delta subunit 8 166 9.6E-57 T 11-11-2016 Gferi_RS12195 c416e57d72712d1df78dfbf8641a3c52 326 Gene3D G3DSA:1.20.272.10 213 323 2.0E-4 T 11-11-2016 Gferi_RS12195 c416e57d72712d1df78dfbf8641a3c52 326 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 15 199 5.4E-60 T 11-11-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS12195 c416e57d72712d1df78dfbf8641a3c52 326 Gene3D G3DSA:3.40.50.300 3 157 1.4E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12195 c416e57d72712d1df78dfbf8641a3c52 326 Gene3D G3DSA:1.10.8.60 158 205 2.4E-5 T 11-11-2016 Gferi_RS12195 c416e57d72712d1df78dfbf8641a3c52 326 SUPERFAMILY SSF52540 3 203 6.12E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12195 c416e57d72712d1df78dfbf8641a3c52 326 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 208 324 4.3E-12 T 11-11-2016 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS18455 f4436473dbee75897dcf980b519d6ac5 209 Gene3D G3DSA:3.40.630.30 20 208 6.5E-13 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS18455 f4436473dbee75897dcf980b519d6ac5 209 SUPERFAMILY SSF55729 21 200 6.2E-15 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS17205 769c9885e2ff19a349261a41a2d61975 429 Gene3D G3DSA:3.40.50.720 22 53 8.0E-8 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS17205 769c9885e2ff19a349261a41a2d61975 429 Gene3D G3DSA:3.40.50.720 85 160 8.0E-8 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS17205 769c9885e2ff19a349261a41a2d61975 429 SUPERFAMILY SSF51735 20 155 7.89E-12 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS17205 769c9885e2ff19a349261a41a2d61975 429 SMART SM00858 345 411 0.0021 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS07080 98f4061719543082b2004bc1c580656c 247 Gene3D G3DSA:3.20.20.190 2 239 1.9E-79 T 11-11-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Gferi_RS07080 98f4061719543082b2004bc1c580656c 247 SUPERFAMILY SSF51695 3 235 1.55E-76 T 11-11-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 Gferi_RS07080 98f4061719543082b2004bc1c580656c 247 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 9 234 1.8E-46 T 11-11-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 Gferi_RS25125 1c94a1e6259fd312c980c48b61142b71 460 Pfam PF03606 C4-dicarboxylate anaerobic carrier 5 453 2.3E-84 T 11-11-2016 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 Gferi_RS26915 af1e4a904866158171cc188c97150104 345 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 17 342 2.4E-89 T 11-11-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like Gferi_RS26915 af1e4a904866158171cc188c97150104 345 Gene3D G3DSA:3.30.160.60 317 341 6.7E-9 T 11-11-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 Gferi_RS26915 af1e4a904866158171cc188c97150104 345 Pfam PF02618 YceG-like family 52 341 2.1E-86 T 11-11-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like Gferi_RS24810 790ba01fc0519fec5be66b18c2e29586 542 Gene3D G3DSA:3.90.76.10 66 181 2.5E-34 T 11-11-2016 Gferi_RS24810 790ba01fc0519fec5be66b18c2e29586 542 SUPERFAMILY SSF53850 39 537 4.71E-94 T 11-11-2016 Gferi_RS24810 790ba01fc0519fec5be66b18c2e29586 542 PIRSF PIRSF002741 1 528 2.5E-76 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS24810 790ba01fc0519fec5be66b18c2e29586 542 Gene3D G3DSA:3.40.190.10 182 305 2.7E-27 T 11-11-2016 Gferi_RS24810 790ba01fc0519fec5be66b18c2e29586 542 Gene3D G3DSA:3.10.105.10 306 485 5.7E-28 T 11-11-2016 Gferi_RS24810 790ba01fc0519fec5be66b18c2e29586 542 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 440 1.7E-68 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS17880 d1b05c8176a944596ab33fd82273794b 340 Pfam PF00294 pfkB family carbohydrate kinase 2 311 1.2E-39 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS17880 d1b05c8176a944596ab33fd82273794b 340 SUPERFAMILY SSF53613 1 330 6.86E-86 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS17880 d1b05c8176a944596ab33fd82273794b 340 Gene3D G3DSA:3.40.1190.20 2 336 5.4E-98 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS09820 d8383e56f2bd607cd9f7c990b69e929e 368 SUPERFAMILY SSF158911 55 162 3.27E-12 T 11-11-2016 Gferi_RS09820 d8383e56f2bd607cd9f7c990b69e929e 368 Pfam PF05031 Iron Transport-associated domain 26 157 3.4E-9 T 11-11-2016 IPR006635 NEAT domain Gferi_RS09820 d8383e56f2bd607cd9f7c990b69e929e 368 SMART SM00725 26 164 6.1E-4 T 11-11-2016 IPR006635 NEAT domain Gferi_RS09820 d8383e56f2bd607cd9f7c990b69e929e 368 Pfam PF11545 Cell surface heme-binding protein Shp 30 156 1.8E-10 T 11-11-2016 IPR020985 Cell surface protein Shp, haem-binding domain GO:0020037 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 4.7E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 4.7E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 518 4.7E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 4.7E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 408 519 2.0E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 SUPERFAMILY SSF55874 351 521 9.69E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 Pfam PF00512 His Kinase A (phospho-acceptor) domain 296 362 9.3E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 SMART SM00387 408 521 4.7E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 Gene3D G3DSA:1.10.287.130 287 347 1.6E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 SUPERFAMILY SSF47384 281 363 1.96E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 SMART SM00388 295 362 2.7E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21750 aa241fcb1c605149f91c9f92967108bb 524 Gene3D G3DSA:3.30.565.10 348 522 4.8E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22560 d265ac5af7f03c95fad807c2e48e355d 224 Pfam PF00072 Response regulator receiver domain 4 112 9.6E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22560 d265ac5af7f03c95fad807c2e48e355d 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 6.6E-24 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS22560 d265ac5af7f03c95fad807c2e48e355d 224 SMART SM00862 148 223 8.6E-22 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS22560 d265ac5af7f03c95fad807c2e48e355d 224 SUPERFAMILY SSF52172 1 183 4.2E-35 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS22560 d265ac5af7f03c95fad807c2e48e355d 224 SMART SM00448 2 112 4.9E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22560 d265ac5af7f03c95fad807c2e48e355d 224 Gene3D G3DSA:3.40.50.2300 1 124 7.5E-34 T 11-11-2016 Gferi_RS22560 d265ac5af7f03c95fad807c2e48e355d 224 Gene3D G3DSA:1.10.10.10 128 223 3.2E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15320 65e8cf16213ac2b95dc8bd7303a5b240 181 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 1 180 21.233 T 11-11-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Gferi_RS15320 65e8cf16213ac2b95dc8bd7303a5b240 181 SUPERFAMILY SSF55144 1 180 6.28E-30 T 11-11-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase Gferi_RS15320 65e8cf16213ac2b95dc8bd7303a5b240 181 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 1 178 2.9E-39 T 11-11-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Gferi_RS15320 65e8cf16213ac2b95dc8bd7303a5b240 181 Gene3D G3DSA:3.90.1140.10 1 180 9.4E-39 T 11-11-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase Gferi_RS15320 65e8cf16213ac2b95dc8bd7303a5b240 181 Pfam PF13563 2'-5' RNA ligase superfamily 26 161 3.6E-13 T 11-11-2016 Gferi_RS14525 0b4ecf825705e2ee67df394409876c6c 551 Gene3D G3DSA:2.120.10.80 308 548 5.8E-12 T 11-11-2016 IPR015915 Kelch-type beta propeller GO:0005515 Gferi_RS14525 0b4ecf825705e2ee67df394409876c6c 551 SUPERFAMILY SSF117281 403 548 2.35E-8 T 11-11-2016 Gferi_RS23040 780ff76be23f749530751479e5e4fa00 147 Pfam PF07486 Cell Wall Hydrolase 19 138 4.2E-20 T 11-11-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 Gferi_RS23670 a81cbdce1b63e07efa389f0888d12946 314 SMART SM00257 267 313 6.4E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS23670 a81cbdce1b63e07efa389f0888d12946 314 Pfam PF01476 LysM domain 268 313 1.1E-13 T 11-11-2016 IPR018392 LysM domain Gferi_RS23670 a81cbdce1b63e07efa389f0888d12946 314 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 21 167 1.4E-12 T 11-11-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Gferi_RS23670 a81cbdce1b63e07efa389f0888d12946 314 Gene3D G3DSA:3.10.350.10 266 313 1.2E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS23670 a81cbdce1b63e07efa389f0888d12946 314 Gene3D G3DSA:3.40.80.10 9 187 4.0E-28 T 11-11-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Gferi_RS23670 a81cbdce1b63e07efa389f0888d12946 314 SUPERFAMILY SSF55846 4 185 1.22E-34 T 11-11-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Gferi_RS23670 a81cbdce1b63e07efa389f0888d12946 314 SUPERFAMILY SSF54106 266 313 1.57E-9 T 11-11-2016 IPR018392 LysM domain Gferi_RS23670 a81cbdce1b63e07efa389f0888d12946 314 SMART SM00644 11 167 1.0E-6 T 11-11-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 453 9.0E-202 T 11-11-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 453 43.786 T 11-11-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 Gene3D G3DSA:1.10.275.10 1 106 5.5E-41 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00149 Fumarate lyase superfamily signature 102 120 8.3E-30 T 11-11-2016 IPR000362 Fumarate lyase family Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00149 Fumarate lyase superfamily signature 147 165 8.3E-30 T 11-11-2016 IPR000362 Fumarate lyase family Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00149 Fumarate lyase superfamily signature 231 258 8.3E-30 T 11-11-2016 IPR000362 Fumarate lyase family Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00149 Fumarate lyase superfamily signature 275 291 8.3E-30 T 11-11-2016 IPR000362 Fumarate lyase family Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 Pfam PF14698 Argininosuccinate lyase C-terminal 363 431 1.7E-25 T 11-11-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 Pfam PF00206 Lyase 6 300 2.7E-79 T 11-11-2016 IPR022761 Fumarate lyase, N-terminal Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00145 Argininosuccinate lyase family signature 142 162 5.8E-67 T 11-11-2016 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00145 Argininosuccinate lyase family signature 193 209 5.8E-67 T 11-11-2016 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00145 Argininosuccinate lyase family signature 310 329 5.8E-67 T 11-11-2016 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00145 Argininosuccinate lyase family signature 275 291 5.8E-67 T 11-11-2016 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00145 Argininosuccinate lyase family signature 231 255 5.8E-67 T 11-11-2016 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 PRINTS PR00145 Argininosuccinate lyase family signature 101 123 5.8E-67 T 11-11-2016 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 Gene3D G3DSA:1.10.40.30 374 430 5.6E-31 T 11-11-2016 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 Gene3D G3DSA:1.20.200.10 107 373 1.4E-106 T 11-11-2016 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 SUPERFAMILY SSF48557 6 454 1.07E-151 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 Gferi_RS13015 83c01e91e938556ccbe6bafc237fd078 458 ProSitePatterns PS00163 Fumarate lyases signature. 275 284 - T 11-11-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 Gferi_RS04145 379d9692045fa07163a59a7a7a22fb1f 303 TIGRFAM TIGR02834 spo_ytxC: putative sporulation protein YtxC 5 286 2.9E-72 T 11-11-2016 IPR014199 Sporulation protein YtxC Gferi_RS04145 379d9692045fa07163a59a7a7a22fb1f 303 Pfam PF08812 YtxC-like family 69 285 6.8E-71 T 11-11-2016 IPR014199 Sporulation protein YtxC Gferi_RS10640 c01c79af3ddf5fe784a33c51649f3a25 385 Pfam PF01979 Amidohydrolase family 221 382 4.0E-17 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS10640 c01c79af3ddf5fe784a33c51649f3a25 385 SUPERFAMILY SSF51556 54 349 2.66E-53 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS10640 c01c79af3ddf5fe784a33c51649f3a25 385 Gene3D G3DSA:3.20.20.140 61 383 5.3E-48 T 11-11-2016 Gferi_RS10640 c01c79af3ddf5fe784a33c51649f3a25 385 SUPERFAMILY SSF51338 348 383 3.91E-25 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS10640 c01c79af3ddf5fe784a33c51649f3a25 385 SUPERFAMILY SSF51338 2 55 3.91E-25 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS10640 c01c79af3ddf5fe784a33c51649f3a25 385 Gene3D G3DSA:2.30.40.10 2 60 9.5E-21 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS08525 e3a37b7a22ee20476b307782107f4a27 170 Pfam PF03551 Transcriptional regulator PadR-like family 6 76 3.0E-16 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS08525 e3a37b7a22ee20476b307782107f4a27 170 Pfam PF10400 Virulence activator alpha C-term 92 167 1.5E-8 T 11-11-2016 IPR018309 Transcription regulator PadR, C-terminal Gferi_RS08525 e3a37b7a22ee20476b307782107f4a27 170 SUPERFAMILY SSF46785 3 168 4.55E-36 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08525 e3a37b7a22ee20476b307782107f4a27 170 Gene3D G3DSA:1.10.10.10 1 97 2.3E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03595 ae427ea15a8b574cfb62c1407f598329 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 9.4E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS03595 ae427ea15a8b574cfb62c1407f598329 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 9.4E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS03595 ae427ea15a8b574cfb62c1407f598329 189 SUPERFAMILY SSF46689 5 80 3.39E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS03595 ae427ea15a8b574cfb62c1407f598329 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 2.4E-12 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS03595 ae427ea15a8b574cfb62c1407f598329 189 Gene3D G3DSA:1.10.357.10 3 184 5.5E-35 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS03595 ae427ea15a8b574cfb62c1407f598329 189 SUPERFAMILY SSF48498 77 188 2.58E-6 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS09535 7bfb005920fda1f42c8af6f1020476c5 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 1.3E-23 T 11-11-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Gferi_RS09535 7bfb005920fda1f42c8af6f1020476c5 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 25.69 T 11-11-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Gferi_RS09535 7bfb005920fda1f42c8af6f1020476c5 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 5.1E-33 T 11-11-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Gferi_RS09535 7bfb005920fda1f42c8af6f1020476c5 95 SUPERFAMILY SSF141000 3 93 1.96E-32 T 11-11-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Gferi_RS06350 eb7f7dc40be52b8ece8da7a0d86575a9 223 Pfam PF12225 Methylene-tetrahydrofolate reductase C terminal 109 203 5.7E-36 T 11-11-2016 IPR022026 Methylene-tetrahydrofolate reductase C-terminal Gferi_RS00925 862834ee3d3541440003efea594fd5f8 246 Gene3D G3DSA:3.30.1330.60 106 234 3.6E-34 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS00925 862834ee3d3541440003efea594fd5f8 246 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 2 56 3.0E-21 T 11-11-2016 IPR025713 Motility protein B, N-terminal domain Gferi_RS00925 862834ee3d3541440003efea594fd5f8 246 Pfam PF00691 OmpA family 125 228 4.9E-23 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS00925 862834ee3d3541440003efea594fd5f8 246 SUPERFAMILY SSF103088 114 234 8.11E-31 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS20540 9f05773d0bb244d1fa29af13042368ba 360 TIGRFAM TIGR03609 S_layer_CsaB: polysaccharide pyruvyl transferase CsaB 3 311 1.1E-91 T 11-11-2016 IPR019896 Polysaccharide pyruvyl transferase, CsaB Gferi_RS20540 9f05773d0bb244d1fa29af13042368ba 360 Pfam PF04230 Polysaccharide pyruvyl transferase 14 293 1.4E-54 T 11-11-2016 IPR007345 Polysaccharide pyruvyl transferase Gferi_RS20540 9f05773d0bb244d1fa29af13042368ba 360 SUPERFAMILY SSF53756 12 290 1.35E-8 T 11-11-2016 Gferi_RS20540 9f05773d0bb244d1fa29af13042368ba 360 Gene3D G3DSA:3.40.50.2000 209 290 8.0E-4 T 11-11-2016 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 SUPERFAMILY SSF52009 123 243 9.55E-38 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 Pfam PF00391 PEP-utilising enzyme, mobile domain 150 223 6.0E-24 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 182 193 - T 11-11-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 Gene3D G3DSA:1.10.274.10 25 131 1.2E-39 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 SUPERFAMILY SSF51621 248 547 4.19E-111 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 Gene3D G3DSA:3.50.30.10 132 253 5.9E-45 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 SUPERFAMILY SSF47831 27 141 5.62E-36 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 124 5.6E-34 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 498 510 2.8E-29 T 11-11-2016 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 445 460 2.8E-29 T 11-11-2016 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 291 310 2.8E-29 T 11-11-2016 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 462 477 2.8E-29 T 11-11-2016 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 Gene3D G3DSA:3.20.20.60 254 568 2.5E-117 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 PIRSF PIRSF000732 1 570 8.3E-231 T 11-11-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 251 539 1.4E-121 T 11-11-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Gferi_RS25025 823dc6599873ebee4d22222832c65af5 570 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 564 8.5E-230 T 11-11-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 Gferi_RS04710 32e4cc1d45602bc51c8272652257136a 167 Gene3D G3DSA:1.10.10.10 4 145 1.7E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04710 32e4cc1d45602bc51c8272652257136a 167 SUPERFAMILY SSF46785 10 146 1.9E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04710 32e4cc1d45602bc51c8272652257136a 167 SMART SM00347 29 133 2.1E-12 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS04710 32e4cc1d45602bc51c8272652257136a 167 Pfam PF01047 MarR family 36 93 3.5E-10 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS14035 29602c6caec1325124e7bacce13ca5eb 397 Gene3D G3DSA:2.120.10.30 114 383 2.5E-15 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS14035 29602c6caec1325124e7bacce13ca5eb 397 SUPERFAMILY SSF82171 84 391 1.18E-18 T 11-11-2016 Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 Gene3D G3DSA:3.60.120.10 18 485 4.1E-169 T 11-11-2016 IPR005801 ADC synthase GO:0009058 Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 Pfam PF00425 chorismate binding enzyme 220 474 5.0E-102 T 11-11-2016 IPR015890 Chorismate-utilising enzyme, C-terminal Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 SUPERFAMILY SSF56322 18 482 2.09E-156 T 11-11-2016 IPR005801 ADC synthase GO:0009058 Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 28 482 1.6E-181 T 11-11-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 Pfam PF04715 Anthranilate synthase component I, N terminal region 28 166 4.6E-36 T 11-11-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 PRINTS PR00095 Anthranilate synthase component I signature 322 335 6.6E-25 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 PRINTS PR00095 Anthranilate synthase component I signature 336 349 6.6E-25 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 PRINTS PR00095 Anthranilate synthase component I signature 416 430 6.6E-25 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS06585 9359e62f1fb6462c44942c0af9cf5fd5 490 PRINTS PR00095 Anthranilate synthase component I signature 431 445 6.6E-25 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS25045 a8871d522d481c8812c7e8bf6ab88ea3 149 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 58 5.3E-6 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS25045 a8871d522d481c8812c7e8bf6ab88ea3 149 Gene3D G3DSA:1.10.150.120 74 145 3.5E-23 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS25045 a8871d522d481c8812c7e8bf6ab88ea3 149 Pfam PF01799 [2Fe-2S] binding domain 72 143 1.2E-21 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS25045 a8871d522d481c8812c7e8bf6ab88ea3 149 SUPERFAMILY SSF54292 1 77 2.1E-17 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS25045 a8871d522d481c8812c7e8bf6ab88ea3 149 SUPERFAMILY SSF47741 72 147 2.75E-23 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS25045 a8871d522d481c8812c7e8bf6ab88ea3 149 Gene3D G3DSA:3.10.20.30 1 73 7.2E-20 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS18040 d0d7c9640b6f9213ea131dfba4cac750 81 SUPERFAMILY SSF55594 3 80 1.19E-23 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18040 d0d7c9640b6f9213ea131dfba4cac750 81 Pfam PF00381 PTS HPr component phosphorylation site 3 78 3.3E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18040 d0d7c9640b6f9213ea131dfba4cac750 81 Gene3D G3DSA:3.30.1340.10 1 78 4.3E-28 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18040 d0d7c9640b6f9213ea131dfba4cac750 81 PRINTS PR00107 Phosphocarrier protein signature 53 70 6.0E-16 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18040 d0d7c9640b6f9213ea131dfba4cac750 81 PRINTS PR00107 Phosphocarrier protein signature 13 29 6.0E-16 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18040 d0d7c9640b6f9213ea131dfba4cac750 81 PRINTS PR00107 Phosphocarrier protein signature 38 53 6.0E-16 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18040 d0d7c9640b6f9213ea131dfba4cac750 81 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 78 3.0E-25 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS18040 d0d7c9640b6f9213ea131dfba4cac750 81 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-11-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Gferi_RS16835 9e9219e85948ef86e8b09c6b08d72f65 335 Gene3D G3DSA:1.10.510.10 133 310 3.7E-14 T 11-11-2016 Gferi_RS16835 9e9219e85948ef86e8b09c6b08d72f65 335 SUPERFAMILY SSF56112 49 318 3.2E-31 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS16835 9e9219e85948ef86e8b09c6b08d72f65 335 Gene3D G3DSA:3.30.200.20 50 132 9.5E-13 T 11-11-2016 Gferi_RS16835 9e9219e85948ef86e8b09c6b08d72f65 335 SMART SM00220 54 316 2.7E-9 T 11-11-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Gferi_RS16835 9e9219e85948ef86e8b09c6b08d72f65 335 Pfam PF00069 Protein kinase domain 54 310 1.5E-23 T 11-11-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 Gferi_RS26190 36c83e7aa2e2c973598af83d9ec5d915 292 Gene3D G3DSA:3.30.70.1070 98 161 9.7E-5 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 Gferi_RS26190 36c83e7aa2e2c973598af83d9ec5d915 292 Pfam PF05036 Sporulation related domain 96 162 8.3E-5 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 Gferi_RS26190 36c83e7aa2e2c973598af83d9ec5d915 292 SUPERFAMILY SSF110997 96 161 1.7E-7 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 Gferi_RS25835 bf98cae255909a0652b03e944c95c407 352 Gene3D G3DSA:3.90.1150.10 252 350 4.9E-19 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS25835 bf98cae255909a0652b03e944c95c407 352 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 209 218 - T 11-11-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 Gferi_RS25835 bf98cae255909a0652b03e944c95c407 352 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 350 53.635 T 11-11-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Gferi_RS25835 bf98cae255909a0652b03e944c95c407 352 Pfam PF00155 Aminotransferase class I and II 24 341 3.5E-53 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS25835 bf98cae255909a0652b03e944c95c407 352 Gene3D G3DSA:3.40.640.10 41 251 1.0E-67 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS25835 bf98cae255909a0652b03e944c95c407 352 SUPERFAMILY SSF53383 23 349 3.76E-74 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS25835 bf98cae255909a0652b03e944c95c407 352 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 6 348 8.7E-101 T 11-11-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 Gferi_RS10610 847368ad7b0cfec5b71063454c051069 141 Pfam PF00583 Acetyltransferase (GNAT) family 41 117 1.5E-16 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS10610 847368ad7b0cfec5b71063454c051069 141 SUPERFAMILY SSF55729 2 140 1.91E-33 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS10610 847368ad7b0cfec5b71063454c051069 141 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 6 136 5.9E-43 T 11-11-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 Gferi_RS10610 847368ad7b0cfec5b71063454c051069 141 Gene3D G3DSA:3.40.630.30 1 140 2.1E-35 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 SUPERFAMILY SSF143414 95 181 2.62E-23 T 11-11-2016 Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 Pfam PF00936 BMC domain 96 173 7.4E-21 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 Pfam PF00936 BMC domain 5 76 1.3E-20 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 61 3.0E-17 T 11-11-2016 Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 95 155 7.0E-10 T 11-11-2016 Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 SUPERFAMILY SSF143414 3 94 2.09E-23 T 11-11-2016 Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 SMART SM00877 95 173 2.0E-27 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 SMART SM00877 3 77 5.1E-24 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15920 25fb37deb774ddf1f097ec53460ab9ed 182 PIRSF PIRSF034834 1 182 2.0E-64 T 11-11-2016 IPR011238 Polyhedral organelle shell protein PduT Gferi_RS06370 d185a2d9424da6503e2ad81f33ddf9db 261 SUPERFAMILY SSF52540 1 256 1.45E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06370 d185a2d9424da6503e2ad81f33ddf9db 261 Gene3D G3DSA:3.40.50.300 1 253 9.6E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06370 d185a2d9424da6503e2ad81f33ddf9db 261 PIRSF PIRSF005647 1 258 7.1E-83 T 11-11-2016 IPR014433 Nickel insertion ATPase/GTPase (CO dehydrogenase maturation factor), CooC type Gferi_RS06370 d185a2d9424da6503e2ad81f33ddf9db 261 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 202 1.9E-30 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Gferi_RS16970 d9ad9941bbc22d1bfff82160cae13ac4 166 Pfam PF14595 Thioredoxin 8 131 1.4E-38 T 11-11-2016 Gferi_RS16970 d9ad9941bbc22d1bfff82160cae13ac4 166 SUPERFAMILY SSF52833 33 123 1.74E-12 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS16970 d9ad9941bbc22d1bfff82160cae13ac4 166 Gene3D G3DSA:3.40.30.10 2 164 6.1E-39 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS00730 89c0498d6b94af3368fcd629b2c1420d 90 Pfam PF04296 Protein of unknown function (DUF448) 9 82 3.3E-30 T 11-11-2016 IPR007393 Domain of unknown function DUF448 Gferi_RS00730 89c0498d6b94af3368fcd629b2c1420d 90 Gene3D G3DSA:3.30.1230.10 1 88 9.5E-36 T 11-11-2016 IPR007393 Domain of unknown function DUF448 Gferi_RS00730 89c0498d6b94af3368fcd629b2c1420d 90 SUPERFAMILY SSF64376 4 88 4.32E-29 T 11-11-2016 IPR007393 Domain of unknown function DUF448 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 SMART SM00342 100 183 4.8E-17 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 Gene3D G3DSA:1.10.10.60 137 185 1.5E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 Gene3D G3DSA:1.10.10.60 82 136 1.0E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 Pfam PF12833 Helix-turn-helix domain 108 184 5.2E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 SUPERFAMILY SSF57884 6 81 2.62E-31 T 11-11-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 Pfam PF02805 Metal binding domain of Ada 11 75 1.3E-29 T 11-11-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 SUPERFAMILY SSF46689 136 185 9.86E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 Gene3D G3DSA:3.40.10.10 5 81 1.5E-32 T 11-11-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 SUPERFAMILY SSF46689 84 133 2.55E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 PIRSF PIRSF000408 1 187 2.7E-52 T 11-11-2016 IPR016220 Methylphosphotriester-DNA alkyltransferase, AdaA Gferi_RS24990 83537c9bd1c2b1c521605f06ff971b5d 188 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 137 179 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS13590 b0d3c9bf8c4eba43acf2ba68de2ad2ca 195 Gene3D G3DSA:3.30.110.40 2 66 2.5E-15 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS13590 b0d3c9bf8c4eba43acf2ba68de2ad2ca 195 Pfam PF02635 DsrE/DsrF-like family 125 194 5.4E-5 T 11-11-2016 IPR003787 Sulphur relay, DsrE/F-like protein Gferi_RS13590 b0d3c9bf8c4eba43acf2ba68de2ad2ca 195 Pfam PF01206 Sulfurtransferase TusA 4 66 1.6E-14 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS13590 b0d3c9bf8c4eba43acf2ba68de2ad2ca 195 SUPERFAMILY SSF64307 2 66 7.85E-14 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS13590 b0d3c9bf8c4eba43acf2ba68de2ad2ca 195 SUPERFAMILY SSF75169 97 194 4.51E-16 T 11-11-2016 IPR027396 DsrEFH-like Gferi_RS13590 b0d3c9bf8c4eba43acf2ba68de2ad2ca 195 TIGRFAM TIGR03527 selenium_YedF: selenium metabolism protein YedF 5 195 5.9E-70 T 11-11-2016 IPR019870 Selenium metabolism protein YedF Gferi_RS13590 b0d3c9bf8c4eba43acf2ba68de2ad2ca 195 Gene3D G3DSA:3.40.1260.10 125 181 8.8E-15 T 11-11-2016 IPR027396 DsrEFH-like Gferi_RS13590 b0d3c9bf8c4eba43acf2ba68de2ad2ca 195 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 5 29 - T 11-11-2016 IPR001455 TusA-like domain Gferi_RS18830 89e5e9e8b728d1827bfded4b3d96085f 76 SUPERFAMILY SSF54862 7 74 1.39E-16 T 11-11-2016 Gferi_RS18830 89e5e9e8b728d1827bfded4b3d96085f 76 Gene3D G3DSA:3.30.70.20 8 74 1.0E-15 T 11-11-2016 Gferi_RS18830 89e5e9e8b728d1827bfded4b3d96085f 76 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 53 64 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS18830 89e5e9e8b728d1827bfded4b3d96085f 76 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 15 26 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS18830 89e5e9e8b728d1827bfded4b3d96085f 76 Pfam PF12838 4Fe-4S dicluster domain 15 64 1.4E-10 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS00505 0d8a0584db6432d673a36c8fe15f865a 274 SUPERFAMILY SSF88713 64 272 4.45E-55 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS00505 0d8a0584db6432d673a36c8fe15f865a 274 Gene3D G3DSA:3.20.20.370 55 272 3.0E-62 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS00505 0d8a0584db6432d673a36c8fe15f865a 274 Pfam PF01522 Polysaccharide deacetylase 74 201 5.7E-31 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS17740 0db4827fc042a96a54ba0cbcd91a0fdd 214 Pfam PF02607 B12 binding domain 5 76 1.0E-14 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17740 0db4827fc042a96a54ba0cbcd91a0fdd 214 Gene3D G3DSA:1.10.1240.10 4 73 7.7E-18 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17740 0db4827fc042a96a54ba0cbcd91a0fdd 214 SUPERFAMILY SSF52242 68 209 1.83E-38 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS17740 0db4827fc042a96a54ba0cbcd91a0fdd 214 Pfam PF02310 B12 binding domain 90 197 3.4E-21 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS17740 0db4827fc042a96a54ba0cbcd91a0fdd 214 SMART SM01018 1 83 4.4E-23 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17740 0db4827fc042a96a54ba0cbcd91a0fdd 214 Gene3D G3DSA:3.40.50.280 74 209 1.5E-43 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS17740 0db4827fc042a96a54ba0cbcd91a0fdd 214 SUPERFAMILY SSF47644 2 81 7.32E-21 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 4 307 1.4E-93 T 11-11-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 SUPERFAMILY SSF55874 3 216 5.73E-53 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 127 1.5E-11 T 11-11-2016 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 95 101 - T 11-11-2016 IPR014762 DNA mismatch repair, conserved site Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 Gene3D G3DSA:3.30.565.10 4 204 1.3E-69 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 3 607 24.854 T 11-11-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 210 327 1.1E-35 T 11-11-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 SUPERFAMILY SSF54211 192 327 1.29E-33 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 SMART SM00853 425 567 5.5E-39 T 11-11-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 SMART SM01340 210 328 1.5E-46 T 11-11-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 Pfam PF08676 MutL C terminal dimerisation domain 425 567 3.6E-34 T 11-11-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 SUPERFAMILY SSF118116 424 609 3.27E-47 T 11-11-2016 Gferi_RS27225 68c5fedee398f8e1ea2a0fb370c27921 610 Gene3D G3DSA:3.30.230.10 205 327 1.5E-34 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS12970 dad789299296bc894cc7825267175d1c 704 SMART SM00854 4 265 6.3E-44 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS12970 dad789299296bc894cc7825267175d1c 704 SUPERFAMILY SSF56300 3 271 6.9E-20 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS12970 dad789299296bc894cc7825267175d1c 704 Gene3D G3DSA:3.60.21.30 38 260 3.7E-6 T 11-11-2016 Gferi_RS12970 dad789299296bc894cc7825267175d1c 704 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 4 264 1.1E-47 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS12970 dad789299296bc894cc7825267175d1c 704 SUPERFAMILY SSF56059 614 680 4.55E-20 T 11-11-2016 Gferi_RS12970 dad789299296bc894cc7825267175d1c 704 SUPERFAMILY SSF56059 436 550 4.55E-20 T 11-11-2016 Gferi_RS12970 dad789299296bc894cc7825267175d1c 704 Gene3D G3DSA:3.30.470.20 619 676 1.1E-10 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS12970 dad789299296bc894cc7825267175d1c 704 Gene3D G3DSA:3.30.470.20 438 559 1.1E-10 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS20605 2d7f0bfb188bf7616c2b78746347e3cc 190 SUPERFAMILY SSF55469 3 187 5.37E-31 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS20605 2d7f0bfb188bf7616c2b78746347e3cc 190 Gene3D G3DSA:3.40.109.10 2 153 2.1E-30 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS20605 2d7f0bfb188bf7616c2b78746347e3cc 190 Pfam PF00881 Nitroreductase family 96 150 8.9E-8 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS20605 2d7f0bfb188bf7616c2b78746347e3cc 190 Pfam PF00881 Nitroreductase family 8 60 1.3E-4 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS20605 2d7f0bfb188bf7616c2b78746347e3cc 190 Gene3D G3DSA:2.20.180.10 154 189 5.7E-19 T 11-11-2016 IPR023312 Putatuve nitroreductase, C-terminal, bacterial Gferi_RS01475 97babd230d429b0d7af9103e3d50df41 90 Pfam PF01312 FlhB HrpN YscU SpaS Family 10 83 7.6E-25 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS01475 97babd230d429b0d7af9103e3d50df41 90 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 39 60 3.6E-7 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS01475 97babd230d429b0d7af9103e3d50df41 90 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 24 3.6E-7 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS01475 97babd230d429b0d7af9103e3d50df41 90 Gene3D G3DSA:3.40.1690.10 10 87 8.3E-28 T 11-11-2016 IPR029025 Type III secretion system substrate exporter, C-terminal Gferi_RS01475 97babd230d429b0d7af9103e3d50df41 90 SUPERFAMILY SSF160544 9 87 2.22E-24 T 11-11-2016 IPR029025 Type III secretion system substrate exporter, C-terminal Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 360 383 3.0E-53 T 11-11-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 531 543 3.0E-53 T 11-11-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 461 489 3.0E-53 T 11-11-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 504 517 3.0E-53 T 11-11-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 327 355 3.0E-53 T 11-11-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 SMART SM00863 168 217 4.4E-25 T 11-11-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Gene3D G3DSA:3.40.50.800 528 632 7.9E-37 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Pfam PF03129 Anticodon binding domain 538 627 7.7E-23 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Gene3D G3DSA:3.30.930.10 240 527 8.6E-124 T 11-11-2016 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Pfam PF02824 TGS domain 1 60 9.4E-14 T 11-11-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Gene3D G3DSA:3.30.980.10 65 128 1.6E-42 T 11-11-2016 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Gene3D G3DSA:3.30.980.10 186 222 1.6E-42 T 11-11-2016 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 SUPERFAMILY SSF55681 241 523 4.98E-96 T 11-11-2016 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Gene3D G3DSA:3.10.20.30 1 63 5.8E-23 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 SUPERFAMILY SSF52954 527 631 8.46E-34 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 321 525 1.6E-39 T 11-11-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Gene3D G3DSA:3.30.54.20 129 185 2.3E-24 T 11-11-2016 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 SUPERFAMILY SSF55186 63 239 6.15E-66 T 11-11-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 168 217 9.4E-16 T 11-11-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 71 628 7.4E-231 T 11-11-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 SUPERFAMILY SSF81271 1 60 2.16E-14 T 11-11-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Gferi_RS04135 b9441afa7265ab2c704886f130f6ea53 634 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 65 631 35.391 T 11-11-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 81 7.0E-29 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 SUPERFAMILY SSF55594 1 87 3.93E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 Gene3D G3DSA:3.30.1340.10 4 87 8.7E-31 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-11-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 Pfam PF00381 PTS HPr component phosphorylation site 5 82 1.4E-27 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 3.9E-22 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 3.9E-22 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25635 a4d95129a5e310e18aa8ece4f3a12168 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 3.9E-22 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS11225 d5859b257a6c4873f6d6ba94fe543afc 213 SUPERFAMILY SSF160527 86 198 4.05E-10 T 11-11-2016 Gferi_RS11225 d5859b257a6c4873f6d6ba94fe543afc 213 Pfam PF01991 ATP synthase (E/31 kDa) subunit 28 191 6.5E-10 T 11-11-2016 IPR002842 ATPase, V1/A1 complex, subunit E GO:0015991|GO:0033178|GO:0046961 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 2.9E-8 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 2.9E-8 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 199 2.9E-8 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 167 195 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 241 261 1.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 218 1.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 170 1.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 199 1.4E-30 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 SUPERFAMILY SSF51735 10 280 9.13E-67 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 Pfam PF00106 short chain dehydrogenase 12 221 4.0E-42 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS14715 ad7b383d0c777169e1a374d721033f16 284 Gene3D G3DSA:3.40.50.720 7 280 3.2E-69 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06615 96322494d1338e82f29adb315f21bfbf 279 Gene3D G3DSA:3.40.50.1820 26 267 4.3E-41 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS06615 96322494d1338e82f29adb315f21bfbf 279 SUPERFAMILY SSF53474 25 267 1.16E-38 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS06615 96322494d1338e82f29adb315f21bfbf 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 124 137 1.7E-7 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS06615 96322494d1338e82f29adb315f21bfbf 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 79 94 1.7E-7 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS06615 96322494d1338e82f29adb315f21bfbf 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 138 151 1.7E-7 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS06615 96322494d1338e82f29adb315f21bfbf 279 Pfam PF00561 alpha/beta hydrolase fold 54 153 2.6E-13 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS02995 17fa8f56666ec489818251dd1a8b8fd4 452 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 414 8.0E-69 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS02995 17fa8f56666ec489818251dd1a8b8fd4 452 Pfam PF01554 MatE 246 408 2.4E-21 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS02995 17fa8f56666ec489818251dd1a8b8fd4 452 Pfam PF01554 MatE 20 180 3.0E-33 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS02995 17fa8f56666ec489818251dd1a8b8fd4 452 PIRSF PIRSF006603 1 452 1.8E-81 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS17475 c26d7f17768fb190d46bad11f7d5b29e 124 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 8 124 3.7E-48 T 11-11-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17475 c26d7f17768fb190d46bad11f7d5b29e 124 SUPERFAMILY SSF53137 9 122 6.54E-54 T 11-11-2016 Gferi_RS17475 c26d7f17768fb190d46bad11f7d5b29e 124 Gene3D G3DSA:3.30.420.100 26 124 1.6E-41 T 11-11-2016 Gferi_RS17475 c26d7f17768fb190d46bad11f7d5b29e 124 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 8 124 29.203 T 11-11-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17475 c26d7f17768fb190d46bad11f7d5b29e 124 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 9 124 6.3E-43 T 11-11-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 Pfam PF00175 Oxidoreductase NAD-binding domain 241 345 4.1E-19 T 11-11-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00410 Phenol hydroxylase reductase family signature 332 340 1.7E-17 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00410 Phenol hydroxylase reductase family signature 225 234 1.7E-17 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00410 Phenol hydroxylase reductase family signature 240 259 1.7E-17 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00410 Phenol hydroxylase reductase family signature 159 171 1.7E-17 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00410 Phenol hydroxylase reductase family signature 265 274 1.7E-17 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 Pfam PF00970 Oxidoreductase FAD-binding domain 132 231 5.7E-21 T 11-11-2016 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 Gene3D G3DSA:3.40.50.80 229 364 2.3E-35 T 11-11-2016 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 SUPERFAMILY SSF52343 219 362 2.49E-34 T 11-11-2016 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 265 274 3.5E-8 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 181 188 3.5E-8 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 277 288 3.5E-8 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 240 259 3.5E-8 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 Gene3D G3DSA:3.10.20.30 41 124 2.2E-19 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 38 113 1.2E-11 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 SUPERFAMILY SSF54292 38 122 4.11E-20 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 SUPERFAMILY SSF63380 104 234 3.41E-31 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Gferi_RS02655 4749f1e6dadc3bb3f8c3a2e024409d4b 365 Gene3D G3DSA:2.40.30.10 125 228 1.2E-28 T 11-11-2016 Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 Gene3D G3DSA:3.90.1150.10 367 488 5.3E-13 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 Gene3D G3DSA:3.40.640.10 163 366 7.3E-68 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 SUPERFAMILY SSF53383 104 487 2.28E-93 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 4.6E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 4.6E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 81 8.7E-19 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 Pfam PF00155 Aminotransferase class I and II 125 477 7.9E-32 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 Gene3D G3DSA:1.10.10.10 16 83 7.9E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 SUPERFAMILY SSF46785 13 85 2.18E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14170 3b616fc5fd164432ca7ce6e2d2a42a78 502 SMART SM00345 22 81 2.4E-20 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22290 03ec625856de309c3069d7271dd1ef55 185 Pfam PF13847 Methyltransferase domain 34 154 1.5E-17 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS22290 03ec625856de309c3069d7271dd1ef55 185 SUPERFAMILY SSF53335 30 181 4.18E-30 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS22290 03ec625856de309c3069d7271dd1ef55 185 Gene3D G3DSA:3.40.50.150 30 178 1.2E-27 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23925 2a1e64e0e64b1eba54218e39dbc6df17 288 Gene3D G3DSA:1.10.260.40 15 93 7.2E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS23925 2a1e64e0e64b1eba54218e39dbc6df17 288 Pfam PF13560 Helix-turn-helix domain 19 97 7.8E-19 T 11-11-2016 Gferi_RS23925 2a1e64e0e64b1eba54218e39dbc6df17 288 SMART SM00530 23 95 1.7E-6 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS23925 2a1e64e0e64b1eba54218e39dbc6df17 288 SUPERFAMILY SSF47413 35 93 2.22E-7 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS25095 0eeecc0ef198e4b953321ffc06c0ded8 74 SUPERFAMILY SSF56349 2 69 1.85E-17 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS25095 0eeecc0ef198e4b953321ffc06c0ded8 74 Pfam PF00589 Phage integrase family 3 58 3.4E-11 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS25095 0eeecc0ef198e4b953321ffc06c0ded8 74 Gene3D G3DSA:1.10.443.10 3 69 5.4E-16 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS05710 0cbf86dd34cb350495fd588145b9fb9c 143 Gene3D G3DSA:2.60.200.20 48 140 4.2E-28 T 11-11-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Gferi_RS05710 0cbf86dd34cb350495fd588145b9fb9c 143 Pfam PF00498 FHA domain 69 133 1.1E-22 T 11-11-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Gferi_RS05710 0cbf86dd34cb350495fd588145b9fb9c 143 SMART SM00240 68 118 3.8E-18 T 11-11-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 Gferi_RS05710 0cbf86dd34cb350495fd588145b9fb9c 143 SUPERFAMILY SSF49879 45 140 9.18E-29 T 11-11-2016 IPR008984 SMAD/FHA domain GO:0005515 Gferi_RS17680 f42184ff899dfeec17c70d0dba81775a 492 Pfam PF04294 VanW like protein 274 401 2.5E-51 T 11-11-2016 IPR007391 Vancomycin resistance VanW Gferi_RS17680 f42184ff899dfeec17c70d0dba81775a 492 SMART SM01208 408 485 4.9E-14 T 11-11-2016 IPR011098 G5 domain Gferi_RS17680 f42184ff899dfeec17c70d0dba81775a 492 Pfam PF07501 G5 domain 414 484 1.3E-12 T 11-11-2016 IPR011098 G5 domain Gferi_RS17680 f42184ff899dfeec17c70d0dba81775a 492 Pfam PF12229 Putative peptidoglycan binding domain 167 232 1.5E-6 T 11-11-2016 IPR022029 Putative peptidoglycan binding domain Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 11-11-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 Gene3D G3DSA:3.30.70.920 55 129 1.4E-14 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 SMART SM00344 1 107 8.2E-33 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 4.3E-13 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 4.3E-13 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 4.3E-13 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 SUPERFAMILY SSF54909 62 137 3.35E-16 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 SUPERFAMILY SSF46785 1 59 1.01E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 Pfam PF01037 Lrp/AsnC ligand binding domain 67 133 7.3E-12 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 Gene3D G3DSA:1.10.10.10 1 52 1.9E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25165 c381443daddd27486c285be8b2d78620 143 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 6.3E-17 T 11-11-2016 Gferi_RS05220 7491569ced6332def424f6ee2f4690ab 256 Pfam PF00005 ABC transporter 34 160 1.5E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS05220 7491569ced6332def424f6ee2f4690ab 256 SMART SM00382 43 209 1.6E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05220 7491569ced6332def424f6ee2f4690ab 256 SUPERFAMILY SSF52540 19 214 4.38E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05220 7491569ced6332def424f6ee2f4690ab 256 Gene3D G3DSA:3.40.50.300 17 218 5.2E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10930 3fdf0f4f0d861dbfb8837975efa8a163 302 Gene3D G3DSA:3.90.25.10 173 290 1.6E-31 T 11-11-2016 Gferi_RS10930 3fdf0f4f0d861dbfb8837975efa8a163 302 Gene3D G3DSA:3.40.50.720 1 172 3.4E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10930 3fdf0f4f0d861dbfb8837975efa8a163 302 SUPERFAMILY SSF51735 1 299 1.5E-89 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10930 3fdf0f4f0d861dbfb8837975efa8a163 302 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 297 1.2E-57 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05805 a95d899b50f3b474a274de702039027c 98 TIGRFAM TIGR01165 cbiN: cobalt transport protein 5 88 1.3E-35 T 11-11-2016 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 Gferi_RS05805 a95d899b50f3b474a274de702039027c 98 Hamap MF_00330 Cobalt transport protein CbiN [cbiN]. 1 98 44.444 T 11-11-2016 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 Gferi_RS05805 a95d899b50f3b474a274de702039027c 98 Pfam PF02553 Cobalt transport protein component CbiN 7 73 2.7E-32 T 11-11-2016 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 Gene3D G3DSA:1.10.287.950 114 329 6.1E-42 T 11-11-2016 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 Gene3D G3DSA:3.40.190.10 397 477 6.1E-5 T 11-11-2016 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 SMART SM00283 91 359 6.2E-28 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 380 619 3.8E-59 T 11-11-2016 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 375 593 3.0E-50 T 11-11-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 167 350 1.7E-37 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 Gene3D G3DSA:3.40.190.10 478 581 8.7E-15 T 11-11-2016 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 SUPERFAMILY SSF58104 77 372 6.15E-51 T 11-11-2016 Gferi_RS13020 013c882396f6eb5f6bc6f2737213e063 627 SUPERFAMILY SSF53850 402 583 1.44E-34 T 11-11-2016 Gferi_RS15435 5172eacaac5fc82231b903c007092838 269 Pfam PF00809 Pterin binding enzyme 6 226 9.4E-22 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS15435 5172eacaac5fc82231b903c007092838 269 Gene3D G3DSA:3.20.20.20 1 260 1.4E-80 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS15435 5172eacaac5fc82231b903c007092838 269 SUPERFAMILY SSF51717 1 260 6.41E-77 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19385 a01117d86626a82c7b0d3e1068b36504 152 Pfam PF13673 Acetyltransferase (GNAT) domain 47 134 4.2E-15 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS19385 a01117d86626a82c7b0d3e1068b36504 152 SUPERFAMILY SSF55729 1 139 6.75E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19385 a01117d86626a82c7b0d3e1068b36504 152 Gene3D G3DSA:3.40.630.30 2 141 2.8E-20 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 SMART SM00304 196 248 1.4E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 Pfam PF00672 HAMP domain 177 244 3.3E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 SUPERFAMILY SSF47384 242 323 1.22E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 SUPERFAMILY SSF158472 197 246 5.62E-8 T 11-11-2016 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 460 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 435 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 421 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 SUPERFAMILY SSF55874 312 479 1.09E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 321 4.1E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 SMART SM00388 256 323 1.8E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 Gene3D G3DSA:3.30.565.10 309 481 2.4E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 Gene3D G3DSA:1.10.287.130 250 308 4.9E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 SMART SM00387 369 482 5.3E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07225 925bb89a47689bb5e3a1bbab6d14b9ba 487 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 369 479 5.2E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS20855 1b023d2d31f2d52d308c826f12bc9121 449 Gene3D G3DSA:3.40.190.10 172 379 7.2E-15 T 11-11-2016 Gferi_RS20855 1b023d2d31f2d52d308c826f12bc9121 449 Pfam PF13416 Bacterial extracellular solute-binding protein 64 382 4.2E-31 T 11-11-2016 Gferi_RS20855 1b023d2d31f2d52d308c826f12bc9121 449 Gene3D G3DSA:3.40.190.10 56 171 3.6E-13 T 11-11-2016 Gferi_RS20855 1b023d2d31f2d52d308c826f12bc9121 449 SUPERFAMILY SSF53850 24 444 1.05E-40 T 11-11-2016 Gferi_RS05715 3a899607cff60907331629bd229dba73 201 Pfam PF01323 DSBA-like thioredoxin domain 10 198 7.4E-21 T 11-11-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 Gferi_RS05715 3a899607cff60907331629bd229dba73 201 Gene3D G3DSA:3.40.30.10 8 194 4.4E-20 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS05715 3a899607cff60907331629bd229dba73 201 SUPERFAMILY SSF52833 9 201 2.99E-22 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS09400 3f2609f7dd7dae469cbe70fd84fa112b 572 Pfam PF02272 DHHA1 domain 371 434 9.6E-13 T 11-11-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Gferi_RS09400 3f2609f7dd7dae469cbe70fd84fa112b 572 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 22 566 2.3E-162 T 11-11-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 Gferi_RS09400 3f2609f7dd7dae469cbe70fd84fa112b 572 Pfam PF01368 DHH family 78 209 2.2E-15 T 11-11-2016 IPR001667 DDH domain Gferi_RS09400 3f2609f7dd7dae469cbe70fd84fa112b 572 SUPERFAMILY SSF64182 53 444 3.53E-110 T 11-11-2016 Gferi_RS11505 d4a60c19a1e479796503f38762cb5246 360 Gene3D G3DSA:2.40.440.10 188 315 8.7E-13 T 11-11-2016 Gferi_RS11505 d4a60c19a1e479796503f38762cb5246 360 SUPERFAMILY SSF141523 189 315 4.19E-14 T 11-11-2016 Gferi_RS11505 d4a60c19a1e479796503f38762cb5246 360 Pfam PF03734 L,D-transpeptidase catalytic domain 190 310 1.7E-12 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS14865 981471f381afca97819e8b30fe950fac 124 Gene3D G3DSA:3.40.50.300 22 114 1.2E-20 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14865 981471f381afca97819e8b30fe950fac 124 SUPERFAMILY SSF52540 36 114 1.59E-11 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14865 981471f381afca97819e8b30fe950fac 124 SMART SM00957 12 123 0.0064 T 11-11-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Gferi_RS14865 981471f381afca97819e8b30fe950fac 124 Pfam PF07517 SecA DEAD-like domain 22 116 2.5E-24 T 11-11-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Gferi_RS26035 6f1c398f57e349974596c65cb7f69e21 171 PIRSF PIRSF018505 1 171 5.4E-71 T 11-11-2016 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 Gferi_RS26035 6f1c398f57e349974596c65cb7f69e21 171 Pfam PF02287 Dehydratase small subunit 39 169 1.3E-63 T 11-11-2016 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 Gferi_RS26035 6f1c398f57e349974596c65cb7f69e21 171 SUPERFAMILY SSF47148 38 170 2.75E-62 T 11-11-2016 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 Gferi_RS06500 d12cc9757a9273c54e120172895ad0fd 381 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 35 379 7.6E-88 T 11-11-2016 IPR010327 FldB/FldC dehydratase alpha/beta subunit Gferi_RS03790 d71ad19e23ab56caa806627d05657698 78 Pfam PF14193 Domain of unknown function (DUF4315) 4 70 1.9E-19 T 11-11-2016 IPR025464 Protein of unknown function DUF4315 Gferi_RS10115 4d80e59de4c359e6552f72e9773c5bb6 252 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 8 248 8.2E-8 T 11-11-2016 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 Gferi_RS10115 4d80e59de4c359e6552f72e9773c5bb6 252 TIGRFAM TIGR04482 D_pro_red_PrdD: proline reductase cluster protein PrdD 7 252 9.7E-115 T 11-11-2016 IPR031000 Proline reductase cluster protein PrdD Gferi_RS22980 9b24e0d9e80782e7ea6bda26ef21b86a 376 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 9 359 1.3E-138 T 11-11-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 Gferi_RS22980 9b24e0d9e80782e7ea6bda26ef21b86a 376 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 8 360 40.667 T 11-11-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 Gferi_RS22980 9b24e0d9e80782e7ea6bda26ef21b86a 376 Gene3D G3DSA:2.30.30.280 214 279 1.3E-30 T 11-11-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 Gferi_RS22980 9b24e0d9e80782e7ea6bda26ef21b86a 376 Pfam PF03054 tRNA methyl transferase 9 359 2.6E-145 T 11-11-2016 Gferi_RS22980 9b24e0d9e80782e7ea6bda26ef21b86a 376 Gene3D G3DSA:2.40.30.10 281 368 1.1E-30 T 11-11-2016 Gferi_RS22980 9b24e0d9e80782e7ea6bda26ef21b86a 376 SUPERFAMILY SSF52402 6 245 5.29E-60 T 11-11-2016 Gferi_RS22980 9b24e0d9e80782e7ea6bda26ef21b86a 376 Gene3D G3DSA:3.40.50.620 2 212 2.3E-100 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS07955 8305000443715e31d711fd81c8e14001 315 Pfam PF00005 ABC transporter 22 174 2.4E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS07955 8305000443715e31d711fd81c8e14001 315 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS07955 8305000443715e31d711fd81c8e14001 315 SUPERFAMILY SSF52540 3 234 1.33E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07955 8305000443715e31d711fd81c8e14001 315 Gene3D G3DSA:3.40.50.300 3 235 2.6E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07955 8305000443715e31d711fd81c8e14001 315 SMART SM00382 30 222 2.8E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 Pfam PF01084 Ribosomal protein S18 19 70 3.8E-24 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 8 74 1.3E-30 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 PRINTS PR00974 Ribosomal protein S18 family signature 30 40 2.5E-16 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 PRINTS PR00974 Ribosomal protein S18 family signature 62 72 2.5E-16 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 PRINTS PR00974 Ribosomal protein S18 family signature 40 47 2.5E-16 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 PRINTS PR00974 Ribosomal protein S18 family signature 48 62 2.5E-16 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 SUPERFAMILY SSF46911 3 74 2.35E-27 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 23 46 - T 11-11-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 23 75 3.0E-18 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 Gene3D G3DSA:4.10.640.10 10 74 1.1E-30 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13655 637e540057dd282b8f123e341c182d19 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 4 75 20.983 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 Gene3D G3DSA:3.40.50.80 100 210 6.4E-31 T 11-11-2016 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 Pfam PF00175 Oxidoreductase NAD-binding domain 109 198 2.3E-7 T 11-11-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 PRINTS PR00409 Phthalate dioxygenase reductase family signature 184 192 9.0E-6 T 11-11-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 PRINTS PR00409 Phthalate dioxygenase reductase family signature 108 127 9.0E-6 T 11-11-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 SUPERFAMILY SSF63380 6 98 1.42E-18 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 PIRSF PIRSF006816 1 258 8.3E-66 T 11-11-2016 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 Hamap MF_01211 Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit [pyrK]. 4 256 35.317 T 11-11-2016 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 Gene3D G3DSA:2.40.30.10 7 96 7.5E-24 T 11-11-2016 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 SUPERFAMILY SSF52343 93 255 7.6E-30 T 11-11-2016 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 Gene3D G3DSA:2.10.240.10 213 256 1.3E-16 T 11-11-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 Pfam PF00970 Oxidoreductase FAD-binding domain 10 96 9.9E-5 T 11-11-2016 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Gferi_RS18475 011ce985be5a5d983d23c564b7680883 258 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 213 254 8.7E-16 T 11-11-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Gferi_RS11340 061ccaf8cbe474770e9e8b94d7c9ac56 339 Pfam PF02719 Polysaccharide biosynthesis protein 7 281 6.1E-105 T 11-11-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Gferi_RS11340 061ccaf8cbe474770e9e8b94d7c9ac56 339 Gene3D G3DSA:3.90.25.10 179 255 2.2E-8 T 11-11-2016 Gferi_RS11340 061ccaf8cbe474770e9e8b94d7c9ac56 339 Gene3D G3DSA:3.40.50.720 5 178 1.0E-38 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11340 061ccaf8cbe474770e9e8b94d7c9ac56 339 Pfam PF08485 Polysaccharide biosynthesis protein C-terminal 284 331 6.1E-24 T 11-11-2016 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain GO:0003978|GO:0009103 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344 Gferi_RS11340 061ccaf8cbe474770e9e8b94d7c9ac56 339 SUPERFAMILY SSF51735 1 259 9.31E-55 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS12280 35ff8d3b7bfb4e4228bef689b94232bb 393 Gene3D G3DSA:3.40.50.970 5 251 3.6E-83 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS12280 35ff8d3b7bfb4e4228bef689b94232bb 393 Gene3D G3DSA:3.40.50.920 253 378 7.4E-45 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS12280 35ff8d3b7bfb4e4228bef689b94232bb 393 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 16 240 2.1E-73 T 11-11-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Gferi_RS12280 35ff8d3b7bfb4e4228bef689b94232bb 393 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 262 366 2.3E-32 T 11-11-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Gferi_RS12280 35ff8d3b7bfb4e4228bef689b94232bb 393 SUPERFAMILY SSF52518 5 251 2.85E-68 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS12280 35ff8d3b7bfb4e4228bef689b94232bb 393 SUPERFAMILY SSF52922 253 378 1.44E-38 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS10490 7d025c82782f8acd2470b5f3fc50cb6c 257 Pfam PF04018 Domain of unknown function (DUF368) 15 224 1.9E-34 T 11-11-2016 IPR007163 Protein of unknown function DUF368 Gferi_RS14650 5b7f9127eabe8ea1d627875e9226b885 280 Pfam PF04962 KduI/IolB family 70 273 1.5E-32 T 11-11-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS14650 5b7f9127eabe8ea1d627875e9226b885 280 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 280 53.199 T 11-11-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS14650 5b7f9127eabe8ea1d627875e9226b885 280 Gene3D G3DSA:2.60.120.500 135 280 2.7E-74 T 11-11-2016 IPR027447 5-keto-4-deoxyuronate isomerase, C-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS14650 5b7f9127eabe8ea1d627875e9226b885 280 SUPERFAMILY SSF51182 1 264 2.41E-100 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS14650 5b7f9127eabe8ea1d627875e9226b885 280 Gene3D G3DSA:2.60.120.520 20 134 2.1E-50 T 11-11-2016 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS14650 5b7f9127eabe8ea1d627875e9226b885 280 PIRSF PIRSF006625 1 280 2.7E-128 T 11-11-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS10260 36f02b6f50d36c14b450014265f97b0f 294 Pfam PF02361 Cobalt transport protein 5 210 1.8E-8 T 11-11-2016 IPR003339 ABC/ECF transporter, transmembrane component Gferi_RS25365 b4a80136aa1addfdf3255410420221cd 444 Pfam PF03704 Bacterial transcriptional activator domain 104 251 3.5E-19 T 11-11-2016 IPR005158 Bacterial transcriptional activator domain Gferi_RS25365 b4a80136aa1addfdf3255410420221cd 444 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 87 5.4E-7 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS25365 b4a80136aa1addfdf3255410420221cd 444 Gene3D G3DSA:1.25.40.10 162 230 3.5E-9 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS25365 b4a80136aa1addfdf3255410420221cd 444 SUPERFAMILY SSF48452 127 255 9.49E-19 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS25365 b4a80136aa1addfdf3255410420221cd 444 SUPERFAMILY SSF46894 5 88 2.83E-11 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS25365 b4a80136aa1addfdf3255410420221cd 444 SMART SM01043 104 251 2.1E-22 T 11-11-2016 IPR005158 Bacterial transcriptional activator domain Gferi_RS25365 b4a80136aa1addfdf3255410420221cd 444 Gene3D G3DSA:1.10.10.10 23 89 9.6E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18125 79724b5e6e89f9720a4dd601c0fbb3a0 209 Gene3D G3DSA:3.30.559.10 4 207 5.9E-66 T 11-11-2016 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 Gferi_RS18125 79724b5e6e89f9720a4dd601c0fbb3a0 209 SMART SM01059 3 203 1.9E-75 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS18125 79724b5e6e89f9720a4dd601c0fbb3a0 209 Pfam PF00302 Chloramphenicol acetyltransferase 4 203 2.7E-39 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS18125 79724b5e6e89f9720a4dd601c0fbb3a0 209 SUPERFAMILY SSF52777 5 208 3.41E-53 T 11-11-2016 Gferi_RS18125 79724b5e6e89f9720a4dd601c0fbb3a0 209 PIRSF PIRSF000440 2 209 2.8E-61 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS18125 79724b5e6e89f9720a4dd601c0fbb3a0 209 ProDom PD002660 TRANSFERASE CHLORAMPHENICOL ACYLTRANSFERASE ACETYLTRANSFERASE ANTIBIOTIC RESISTANCE PLASMID CAT O-ACETYLTRANSFERASE DIRECT 13 202 1.0E-74 T 11-11-2016 IPR001707 Chloramphenicol acetyltransferase GO:0008811 Gferi_RS20560 22f6d085dbda5b9aa20eb2f7fb5d65e7 313 SMART SM00861 5 170 3.6E-64 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS20560 22f6d085dbda5b9aa20eb2f7fb5d65e7 313 SUPERFAMILY SSF52518 2 172 7.25E-62 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS20560 22f6d085dbda5b9aa20eb2f7fb5d65e7 313 Pfam PF02779 Transketolase, pyrimidine binding domain 4 169 7.8E-43 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS20560 22f6d085dbda5b9aa20eb2f7fb5d65e7 313 Pfam PF02780 Transketolase, C-terminal domain 182 302 1.8E-34 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS20560 22f6d085dbda5b9aa20eb2f7fb5d65e7 313 SUPERFAMILY SSF52922 179 309 1.44E-37 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS20560 22f6d085dbda5b9aa20eb2f7fb5d65e7 313 Gene3D G3DSA:3.40.50.920 183 309 2.1E-40 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS20560 22f6d085dbda5b9aa20eb2f7fb5d65e7 313 Gene3D G3DSA:3.40.50.970 2 182 8.1E-67 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS04290 b0d5bee506f1076ee4ea9dd2e8a05a31 258 Pfam PF01522 Polysaccharide deacetylase 52 165 1.9E-33 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS04290 b0d5bee506f1076ee4ea9dd2e8a05a31 258 SUPERFAMILY SSF88713 26 237 1.13E-63 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS04290 b0d5bee506f1076ee4ea9dd2e8a05a31 258 Gene3D G3DSA:3.20.20.370 16 240 7.5E-66 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Gene3D G3DSA:3.30.420.10 300 501 3.2E-47 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 SUPERFAMILY SSF47807 171 286 8.07E-36 T 11-11-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Pfam PF00476 DNA polymerase family A 511 886 3.0E-162 T 11-11-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Gene3D G3DSA:1.20.1060.10 503 622 3.5E-40 T 11-11-2016 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Gene3D G3DSA:3.40.50.1010 4 185 2.5E-64 T 11-11-2016 IPR029060 PIN domain-like Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 266 5.5E-36 T 11-11-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 SMART SM00482 645 852 6.4E-113 T 11-11-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 SMART SM00279 173 208 2.7E-18 T 11-11-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 SUPERFAMILY SSF56672 482 887 7.0E-157 T 11-11-2016 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 TIGRFAM TIGR00593 pola: DNA polymerase I 6 888 0.0 T 11-11-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Pfam PF01612 3'-5' exonuclease 334 477 1.5E-8 T 11-11-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 SMART SM00475 3 262 6.0E-132 T 11-11-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 SMART SM00474 301 478 2.4E-11 T 11-11-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 ProSitePatterns PS00447 DNA polymerase family A signature. 714 733 - T 11-11-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 169 1.6E-51 T 11-11-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 SUPERFAMILY SSF88723 2 169 2.7E-52 T 11-11-2016 IPR029060 PIN domain-like Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 805 821 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 614 636 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 690 703 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 773 784 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 751 762 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 660 683 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 714 739 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 637 652 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 PRINTS PR00868 DNA-polymerase family A (pol I) signature 835 848 1.4E-76 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Gene3D G3DSA:1.10.150.20 672 778 3.3E-36 T 11-11-2016 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Gene3D G3DSA:1.10.150.20 186 247 2.0E-30 T 11-11-2016 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 SUPERFAMILY SSF53098 304 478 4.3E-33 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Gene3D G3DSA:3.30.70.370 623 671 3.8E-67 T 11-11-2016 Gferi_RS26130 4702b2a7b960ed6bc35a1f25b46f301d 888 Gene3D G3DSA:3.30.70.370 779 888 3.8E-67 T 11-11-2016 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 63 3.6E-19 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 SUPERFAMILY SSF52374 1 156 4.56E-46 T 11-11-2016 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 36.52 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 Pfam PF01467 Cytidylyltransferase-like 5 133 8.7E-23 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 Gene3D G3DSA:3.40.50.620 1 156 8.5E-56 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 1.7E-55 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 1.7E-55 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 1.7E-55 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 1.7E-55 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 1.7E-55 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 Gferi_RS01630 30b45b8e3c905b65e92279cfc9fdb6b8 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 156 8.6E-65 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 Gferi_RS16170 b70c3ba27f3d76e27928247249a46ad4 402 Gene3D G3DSA:1.10.150.280 308 350 9.3E-5 T 11-11-2016 Gferi_RS16170 b70c3ba27f3d76e27928247249a46ad4 402 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 3 370 2.2E-127 T 11-11-2016 IPR023874 DNA modification/repair radical SAM protein, putative Gferi_RS16170 b70c3ba27f3d76e27928247249a46ad4 402 SUPERFAMILY SSF47781 284 365 2.0E-11 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS16170 b70c3ba27f3d76e27928247249a46ad4 402 Pfam PF04055 Radical SAM superfamily 59 221 1.5E-7 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS16170 b70c3ba27f3d76e27928247249a46ad4 402 Gene3D G3DSA:3.20.20.70 49 228 3.3E-15 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS16170 b70c3ba27f3d76e27928247249a46ad4 402 SMART SM00729 53 269 0.0072 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS16170 b70c3ba27f3d76e27928247249a46ad4 402 SUPERFAMILY SSF102114 36 259 4.97E-20 T 11-11-2016 Gferi_RS16420 51565b0758701994ff177646da89f7d2 273 Gene3D G3DSA:3.40.50.620 8 171 1.5E-30 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS16420 51565b0758701994ff177646da89f7d2 273 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 6 261 6.1E-83 T 11-11-2016 IPR005232 Conserved hypothetical protein CHP00268 Gferi_RS16420 51565b0758701994ff177646da89f7d2 273 SUPERFAMILY SSF52402 19 221 7.28E-37 T 11-11-2016 Gferi_RS16420 51565b0758701994ff177646da89f7d2 273 PIRSF PIRSF006661 1 273 1.4E-107 T 11-11-2016 IPR005232 Conserved hypothetical protein CHP00268 Gferi_RS16420 51565b0758701994ff177646da89f7d2 273 Pfam PF02540 NAD synthase 15 77 2.7E-6 T 11-11-2016 IPR022310 NAD/GMP synthase Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 Gene3D G3DSA:3.40.50.2030 379 546 2.9E-76 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 Gene3D G3DSA:1.20.1270.20 3 154 1.2E-42 T 11-11-2016 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 Gene3D G3DSA:1.20.1270.20 155 228 1.2E-27 T 11-11-2016 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 Pfam PF03063 Prismane/CO dehydrogenase family 5 543 2.1E-171 T 11-11-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 Gene3D G3DSA:3.40.50.2030 231 378 4.0E-69 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 SUPERFAMILY SSF56821 4 546 6.56E-195 T 11-11-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 Hamap MF_00069 Hydroxylamine reductase [hcp]. 5 548 21.366 T 11-11-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 5 547 2.0E-228 T 11-11-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05260 20603fc7300198937e63caa5cddd8e76 553 PIRSF PIRSF000076 5 549 9.8E-235 T 11-11-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS08825 ed3d5781ed84a6b9c4de1aa3418ef3d5 319 Gene3D G3DSA:3.30.1330.60 164 290 1.4E-28 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS08825 ed3d5781ed84a6b9c4de1aa3418ef3d5 319 SUPERFAMILY SSF103088 164 289 1.57E-24 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS08825 ed3d5781ed84a6b9c4de1aa3418ef3d5 319 Pfam PF00691 OmpA family 176 283 6.7E-17 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS08555 0440861334db5373a18de791cfdaa85c 135 Gene3D G3DSA:1.20.5.570 101 134 2.1E-7 T 11-11-2016 Gferi_RS08555 0440861334db5373a18de791cfdaa85c 135 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 12 76 2.7E-13 T 11-11-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Gferi_RS08555 0440861334db5373a18de791cfdaa85c 135 SUPERFAMILY SSF143968 89 134 1.96E-10 T 11-11-2016 Gferi_RS08555 0440861334db5373a18de791cfdaa85c 135 SUPERFAMILY SSF50475 3 76 5.89E-14 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 SUPERFAMILY SSF50615 4 73 4.32E-12 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 214 435 2.0E-93 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 9 70 7.5E-10 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 SUPERFAMILY SSF47917 447 556 3.14E-21 T 11-11-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 426 435 - T 11-11-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 86 204 2.4E-36 T 11-11-2016 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 3 587 48.577 T 11-11-2016 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 Gene3D G3DSA:1.10.1140.10 445 525 6.3E-18 T 11-11-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 Gene3D G3DSA:3.40.50.300 74 88 4.7E-105 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 Gene3D G3DSA:3.40.50.300 177 435 4.7E-105 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11220 aa53ddff61fada23a264922fb37b71d2 589 SUPERFAMILY SSF52540 184 440 1.65E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SUPERFAMILY SSF49265 411 592 4.79E-30 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:2.60.40.10 323 408 3.5E-22 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:2.60.40.10 415 500 1.0E-21 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:2.60.40.10 38 126 4.3E-17 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:2.60.40.10 231 316 9.8E-18 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:2.60.40.10 599 683 8.7E-21 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:2.60.40.10 137 221 9.9E-22 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:2.60.40.10 507 592 8.1E-22 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SUPERFAMILY SSF49265 38 222 1.7E-31 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SMART SM00060 134 211 2.0E-10 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SMART SM00060 36 116 3.2E-8 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SMART SM00060 597 675 1.5E-10 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SMART SM00060 505 583 1.5E-10 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SMART SM00060 229 307 2.2E-6 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SMART SM00060 321 399 1.4E-11 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SMART SM00060 413 491 1.4E-10 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SUPERFAMILY SSF49265 228 409 1.48E-30 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:3.30.457.10 685 730 1.2E-9 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Gene3D G3DSA:3.30.457.10 731 807 3.1E-23 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF00041 Fibronectin type III domain 135 214 1.0E-11 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF00041 Fibronectin type III domain 231 310 9.2E-7 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF00041 Fibronectin type III domain 414 494 1.7E-8 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF00041 Fibronectin type III domain 322 402 1.5E-9 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF00041 Fibronectin type III domain 506 586 2.9E-8 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF00041 Fibronectin type III domain 38 111 7.4E-6 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF00041 Fibronectin type III domain 598 678 2.9E-8 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SUPERFAMILY SSF55383 722 811 1.24E-20 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 SUPERFAMILY SSF49265 595 689 7.22E-18 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF07833 Copper amine oxidase N-terminal domain 682 742 2.7E-12 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS25385 2607df69c863c0ea78ab5c04674741fc 822 Pfam PF07833 Copper amine oxidase N-terminal domain 720 817 7.5E-28 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS14075 0b80bc14124d53b73f9bebe72aa9db67 263 Gene3D G3DSA:3.40.50.300 3 233 2.4E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14075 0b80bc14124d53b73f9bebe72aa9db67 263 Pfam PF00005 ABC transporter 24 167 1.3E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14075 0b80bc14124d53b73f9bebe72aa9db67 263 SUPERFAMILY SSF52540 6 234 2.93E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14075 0b80bc14124d53b73f9bebe72aa9db67 263 SMART SM00382 33 216 4.5E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04640 1d0b1274541035cfdd30ce930a811430 121 SUPERFAMILY SSF47240 7 84 1.19E-16 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS04640 1d0b1274541035cfdd30ce930a811430 121 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 22 72 3.0E-5 T 11-11-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 Gferi_RS04640 1d0b1274541035cfdd30ce930a811430 121 Gene3D G3DSA:1.20.1260.10 12 102 7.6E-9 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS02080 8f6c107d7c6c621dc18dd4c74471db15 86 Pfam PF03698 Uncharacterised protein family (UPF0180) 4 83 8.6E-11 T 11-11-2016 IPR005370 Uncharacterised protein family UPF0180 Gferi_RS04025 cf198c17c6535bce2e4927ba89bb03a4 476 Pfam PF01694 Rhomboid family 223 358 8.3E-37 T 11-11-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 Gferi_RS04025 cf198c17c6535bce2e4927ba89bb03a4 476 Gene3D G3DSA:1.20.1540.10 183 358 7.0E-42 T 11-11-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 Gferi_RS04025 cf198c17c6535bce2e4927ba89bb03a4 476 Gene3D G3DSA:1.25.40.10 390 473 3.9E-15 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS04025 cf198c17c6535bce2e4927ba89bb03a4 476 SUPERFAMILY SSF144091 180 360 4.05E-43 T 11-11-2016 Gferi_RS04025 cf198c17c6535bce2e4927ba89bb03a4 476 Pfam PF13432 Tetratricopeptide repeat 406 463 8.3E-10 T 11-11-2016 Gferi_RS04025 cf198c17c6535bce2e4927ba89bb03a4 476 SUPERFAMILY SSF48452 389 474 2.97E-15 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS04025 cf198c17c6535bce2e4927ba89bb03a4 476 SMART SM00028 396 429 0.67 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS04025 cf198c17c6535bce2e4927ba89bb03a4 476 SMART SM00028 430 463 0.0017 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS22570 0cc157c23e317355201474aa97976565 252 Pfam PF00005 ABC transporter 25 173 8.9E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22570 0cc157c23e317355201474aa97976565 252 Gene3D G3DSA:3.40.50.300 2 226 9.4E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22570 0cc157c23e317355201474aa97976565 252 SMART SM00382 34 229 3.9E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22570 0cc157c23e317355201474aa97976565 252 SUPERFAMILY SSF52540 3 226 6.31E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06420 881a95cd29b47a9c047c7c22dff2aa1b 94 SUPERFAMILY SSF56300 1 77 1.49E-23 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS06420 881a95cd29b47a9c047c7c22dff2aa1b 94 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 4 70 1.5E-11 T 11-11-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Gferi_RS06420 881a95cd29b47a9c047c7c22dff2aa1b 94 Gene3D G3DSA:3.60.21.10 4 80 3.1E-28 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS10850 7ec92e7b7aa97a20c1d5c957d22e7c9b 291 SMART SM00849 52 248 1.9E-7 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS10850 7ec92e7b7aa97a20c1d5c957d22e7c9b 291 Pfam PF00753 Metallo-beta-lactamase superfamily 50 247 9.9E-19 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS10850 7ec92e7b7aa97a20c1d5c957d22e7c9b 291 SUPERFAMILY SSF56281 43 290 4.19E-56 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS10850 7ec92e7b7aa97a20c1d5c957d22e7c9b 291 Gene3D G3DSA:3.60.15.10 40 288 2.4E-40 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS07840 371a933398bdac85b7e644749f0f2b6c 275 Pfam PF00005 ABC transporter 23 170 5.9E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS07840 371a933398bdac85b7e644749f0f2b6c 275 Gene3D G3DSA:3.40.50.300 3 237 4.4E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07840 371a933398bdac85b7e644749f0f2b6c 275 SMART SM00382 31 220 2.2E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07840 371a933398bdac85b7e644749f0f2b6c 275 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS07840 371a933398bdac85b7e644749f0f2b6c 275 SUPERFAMILY SSF52540 5 233 6.16E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 Pfam PF01713 Smr domain 717 792 3.1E-19 T 11-11-2016 IPR002625 Smr domain Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 SMART SM00533 13 315 1.6E-20 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 PIRSF PIRSF005814 1 792 9.3E-267 T 11-11-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 SUPERFAMILY SSF160443 716 791 4.84E-9 T 11-11-2016 IPR002625 Smr domain Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 SMART SM00463 714 792 3.3E-14 T 11-11-2016 IPR002625 Smr domain Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 Pfam PF00488 MutS domain V 331 513 1.8E-37 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 TIGRFAM TIGR01069 mutS2: MutS2 family protein 1 792 2.4E-222 T 11-11-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 2 791 21.414 T 11-11-2016 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 410 426 - T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 SMART SM00534 328 513 1.5E-77 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 Gene3D G3DSA:3.40.50.300 292 515 9.9E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 SUPERFAMILY SSF52540 293 515 6.18E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04045 5d5e2e465a0b6211c6a9d544092f085b 792 SUPERFAMILY SSF48334 34 288 7.32E-24 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:1.20.1580.10 408 478 5.7E-56 T 11-11-2016 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:1.20.1580.10 93 131 5.7E-56 T 11-11-2016 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:1.20.1580.10 250 283 5.7E-56 T 11-11-2016 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 SUPERFAMILY SSF52540 617 912 2.46E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:3.40.50.300 479 598 1.3E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:3.40.50.300 4 91 1.3E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:3.40.50.300 606 668 3.9E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:3.40.50.300 820 938 3.9E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:3.30.1490.20 132 155 2.8E-29 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:3.30.1490.20 202 248 2.8E-29 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:1.10.8.280 286 407 4.3E-41 T 11-11-2016 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 ProSitePatterns PS00211 ABC transporters family signature. 829 843 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 923 0.0 T 11-11-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Gene3D G3DSA:1.20.1580.10 693 819 2.8E-57 T 11-11-2016 Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 SUPERFAMILY SSF52540 9 206 8.63E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 SUPERFAMILY SSF52540 431 570 8.63E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20690 892a31dc38476413da6c51ed32949255 940 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 939 23.248 T 11-11-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 Gene3D G3DSA:3.40.50.970 344 541 3.2E-64 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 SUPERFAMILY SSF52467 186 350 8.27E-55 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 Gene3D G3DSA:3.40.50.1220 187 343 5.5E-60 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 383 530 1.2E-43 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 168 2.8E-59 T 11-11-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 542 2.6E-224 T 11-11-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 Gene3D G3DSA:3.40.50.970 1 177 5.6E-76 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 SUPERFAMILY SSF52518 1 179 4.95E-65 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 327 1.9E-45 T 11-11-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Gferi_RS15725 88f6339189b26a816d41b1ee135ec0a2 544 SUPERFAMILY SSF52518 358 541 2.03E-56 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS24435 5ad81ed5bb9d52095a0dee4aa9177e05 497 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS24435 5ad81ed5bb9d52095a0dee4aa9177e05 497 SMART SM00382 23 212 7.7E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS24435 5ad81ed5bb9d52095a0dee4aa9177e05 497 SUPERFAMILY SSF52540 2 224 1.98E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24435 5ad81ed5bb9d52095a0dee4aa9177e05 497 SUPERFAMILY SSF52540 250 485 4.71E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24435 5ad81ed5bb9d52095a0dee4aa9177e05 497 Pfam PF00005 ABC transporter 15 164 5.3E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS24435 5ad81ed5bb9d52095a0dee4aa9177e05 497 Pfam PF00005 ABC transporter 269 424 7.1E-19 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS24435 5ad81ed5bb9d52095a0dee4aa9177e05 497 Gene3D G3DSA:3.40.50.300 1 230 7.9E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24435 5ad81ed5bb9d52095a0dee4aa9177e05 497 Gene3D G3DSA:3.40.50.300 248 489 1.6E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04425 61b4b2254b2d76ea7595b08a97839af1 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 165 5.0E-23 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04425 61b4b2254b2d76ea7595b08a97839af1 172 SUPERFAMILY SSF88659 102 167 1.12E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04425 61b4b2254b2d76ea7595b08a97839af1 172 Pfam PF04542 Sigma-70 region 2 27 87 3.3E-9 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04425 61b4b2254b2d76ea7595b08a97839af1 172 Gene3D G3DSA:1.10.10.10 109 168 1.4E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04425 61b4b2254b2d76ea7595b08a97839af1 172 Pfam PF08281 Sigma-70, region 4 112 163 1.4E-13 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04425 61b4b2254b2d76ea7595b08a97839af1 172 Gene3D G3DSA:1.10.1740.10 4 108 2.9E-20 T 11-11-2016 Gferi_RS04425 61b4b2254b2d76ea7595b08a97839af1 172 SUPERFAMILY SSF88946 2 100 2.43E-18 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 TIGRFAM TIGR01696 deoB: phosphopentomutase 4 382 1.4E-168 T 11-11-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 Gene3D G3DSA:3.40.720.10 2 98 1.7E-81 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 Gene3D G3DSA:3.40.720.10 218 387 1.7E-81 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 Hamap MF_00740 Phosphopentomutase [deoB]. 2 385 53.846 T 11-11-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 SUPERFAMILY SSF143856 99 214 1.7E-49 T 11-11-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 Gene3D G3DSA:3.30.70.1250 99 214 2.7E-55 T 11-11-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 PIRSF PIRSF001491 1 389 8.7E-159 T 11-11-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 SUPERFAMILY SSF53649 215 387 4.19E-81 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 SUPERFAMILY SSF53649 1 99 4.19E-81 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS00175 edc13045290762368ca408a124ba44bf 389 Pfam PF01676 Metalloenzyme superfamily 4 377 1.8E-40 T 11-11-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 SUPERFAMILY SSF46589 818 882 7.32E-16 T 11-11-2016 IPR010978 tRNA-binding arm GO:0000166 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Pfam PF08264 Anticodon-binding domain of tRNA 610 758 5.8E-48 T 11-11-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 PRINTS PR00986 Valyl-tRNA synthetase signature 40 51 5.6E-39 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 PRINTS PR00986 Valyl-tRNA synthetase signature 350 363 5.6E-39 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 PRINTS PR00986 Valyl-tRNA synthetase signature 235 252 5.6E-39 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 PRINTS PR00986 Valyl-tRNA synthetase signature 448 469 5.6E-39 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 PRINTS PR00986 Valyl-tRNA synthetase signature 479 497 5.6E-39 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 SUPERFAMILY SSF47323 579 833 1.33E-73 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 SUPERFAMILY SSF50677 195 346 3.79E-65 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 SUPERFAMILY SSF52374 345 577 2.6E-146 T 11-11-2016 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 SUPERFAMILY SSF52374 5 197 2.6E-146 T 11-11-2016 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Gene3D G3DSA:1.10.287.380 811 879 7.8E-4 T 11-11-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 18 566 1.9E-215 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 818 883 3.8E-20 T 11-11-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Gene3D G3DSA:1.10.730.10 568 749 1.2E-69 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 TIGRFAM TIGR00422 valS: valine--tRNA ligase 7 864 0.0 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Hamap MF_02004 Valine--tRNA ligase [valS]. 6 883 15.994 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Gene3D G3DSA:3.90.740.10 199 341 1.3E-53 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Gene3D G3DSA:3.40.50.620 345 566 4.3E-147 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS04340 3c85714c9548987dfbe491cce3c5c9be 887 Gene3D G3DSA:3.40.50.620 8 198 4.3E-147 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS22510 57235bd81d3d6d3d31ff40db23783608 342 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22510 57235bd81d3d6d3d31ff40db23783608 342 SUPERFAMILY SSF52540 4 254 2.11E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22510 57235bd81d3d6d3d31ff40db23783608 342 SMART SM00382 33 241 8.2E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22510 57235bd81d3d6d3d31ff40db23783608 342 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 300 1.8E-18 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS22510 57235bd81d3d6d3d31ff40db23783608 342 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 320 6.0E-25 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS22510 57235bd81d3d6d3d31ff40db23783608 342 Gene3D G3DSA:3.40.50.300 4 257 2.1E-78 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22510 57235bd81d3d6d3d31ff40db23783608 342 Pfam PF00005 ABC transporter 25 183 1.4E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS12910 782a1386ecc8824d1094086475bc9e7d 287 Pfam PF14505 Domain of unknown function (DUF4438) 27 283 1.0E-117 T 11-11-2016 IPR029433 Protein of unknown function DUF4438 Gferi_RS12910 782a1386ecc8824d1094086475bc9e7d 287 Gene3D G3DSA:4.10.1180.10 26 56 7.4E-22 T 11-11-2016 Gferi_RS12910 782a1386ecc8824d1094086475bc9e7d 287 Gene3D G3DSA:2.102.30.10 136 285 2.3E-67 T 11-11-2016 Gferi_RS12910 782a1386ecc8824d1094086475bc9e7d 287 Gene3D G3DSA:2.40.10.170 57 135 1.8E-41 T 11-11-2016 Gferi_RS25400 2cf617193a65e07495b2fbf7ad0b9e59 159 Pfam PF01966 HD domain 34 135 6.4E-14 T 11-11-2016 IPR006674 HD domain Gferi_RS25400 2cf617193a65e07495b2fbf7ad0b9e59 159 SMART SM00471 29 145 3.0E-8 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS25400 2cf617193a65e07495b2fbf7ad0b9e59 159 Gene3D G3DSA:1.10.3210.10 1 137 1.5E-28 T 11-11-2016 IPR006674 HD domain Gferi_RS25400 2cf617193a65e07495b2fbf7ad0b9e59 159 SUPERFAMILY SSF109604 1 146 3.33E-33 T 11-11-2016 Gferi_RS25400 2cf617193a65e07495b2fbf7ad0b9e59 159 TIGRFAM TIGR00277 HDIG: HDIG domain 34 99 2.4E-9 T 11-11-2016 IPR006675 HDIG domain Gferi_RS12625 d92a45963a2ef5218fb4c7087c1d5682 426 Pfam PF10797 Protein of unknown function 3 422 3.2E-180 T 11-11-2016 IPR019733 Uncharacterised protein family YhfT Gferi_RS05365 ceb20b154f7d72eee27ee5dc97dc5663 407 SMART SM00849 34 223 1.9E-21 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS05365 ceb20b154f7d72eee27ee5dc97dc5663 407 Gene3D G3DSA:3.40.50.360 246 402 4.6E-38 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS05365 ceb20b154f7d72eee27ee5dc97dc5663 407 Pfam PF00258 Flavodoxin 252 371 2.4E-8 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Gferi_RS05365 ceb20b154f7d72eee27ee5dc97dc5663 407 SUPERFAMILY SSF56281 11 285 4.74E-46 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS05365 ceb20b154f7d72eee27ee5dc97dc5663 407 Gene3D G3DSA:3.60.15.10 3 242 2.4E-77 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS05365 ceb20b154f7d72eee27ee5dc97dc5663 407 SUPERFAMILY SSF52218 247 398 8.23E-29 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS05365 ceb20b154f7d72eee27ee5dc97dc5663 407 ProSitePatterns PS00201 Flavodoxin signature. 252 268 - T 11-11-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Gferi_RS05365 ceb20b154f7d72eee27ee5dc97dc5663 407 PIRSF PIRSF005243 1 406 1.8E-121 T 11-11-2016 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 Gene3D G3DSA:1.10.560.10 6 137 2.4E-66 T 11-11-2016 IPR027413 GroEL-like equatorial domain Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 Gene3D G3DSA:1.10.560.10 385 504 2.4E-66 T 11-11-2016 IPR027413 GroEL-like equatorial domain Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 ProSitePatterns PS00751 Chaperonins TCP-1 signature 2. 55 71 - T 11-11-2016 IPR002194 Chaperonin TCP-1, conserved site GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-389957|Reactome: R-HSA-389960|Reactome: R-HSA-390450|Reactome: R-HSA-390471|Reactome: R-HSA-6814122 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 SUPERFAMILY SSF52029 198 338 1.57E-14 T 11-11-2016 IPR027409 GroEL-like apical domain Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 SUPERFAMILY SSF48592 13 138 3.77E-65 T 11-11-2016 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 SUPERFAMILY SSF48592 386 505 3.77E-65 T 11-11-2016 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 Pfam PF00118 TCP-1/cpn60 chaperonin family 31 506 1.1E-101 T 11-11-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 Gene3D G3DSA:3.50.7.10 198 316 2.4E-14 T 11-11-2016 IPR027409 GroEL-like apical domain Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 PRINTS PR00304 Tailless complex polypeptide 1 (chaperone) signature 31 47 7.4E-28 T 11-11-2016 IPR017998 Chaperone tailless complex polypeptide 1 (TCP-1) Reactome: R-HSA-389957|Reactome: R-HSA-389960|Reactome: R-HSA-390450|Reactome: R-HSA-390471|Reactome: R-HSA-6814122 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 PRINTS PR00304 Tailless complex polypeptide 1 (chaperone) signature 83 102 7.4E-28 T 11-11-2016 IPR017998 Chaperone tailless complex polypeptide 1 (TCP-1) Reactome: R-HSA-389957|Reactome: R-HSA-389960|Reactome: R-HSA-390450|Reactome: R-HSA-390471|Reactome: R-HSA-6814122 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 PRINTS PR00304 Tailless complex polypeptide 1 (chaperone) signature 389 401 7.4E-28 T 11-11-2016 IPR017998 Chaperone tailless complex polypeptide 1 (TCP-1) Reactome: R-HSA-389957|Reactome: R-HSA-389960|Reactome: R-HSA-390450|Reactome: R-HSA-390471|Reactome: R-HSA-6814122 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 PRINTS PR00304 Tailless complex polypeptide 1 (chaperone) signature 356 378 7.4E-28 T 11-11-2016 IPR017998 Chaperone tailless complex polypeptide 1 (TCP-1) Reactome: R-HSA-389957|Reactome: R-HSA-389960|Reactome: R-HSA-390450|Reactome: R-HSA-390471|Reactome: R-HSA-6814122 Gferi_RS02355 5017c696810476a1e9fc91cceccbf58b 511 PRINTS PR00304 Tailless complex polypeptide 1 (chaperone) signature 53 71 7.4E-28 T 11-11-2016 IPR017998 Chaperone tailless complex polypeptide 1 (TCP-1) Reactome: R-HSA-389957|Reactome: R-HSA-389960|Reactome: R-HSA-390450|Reactome: R-HSA-390471|Reactome: R-HSA-6814122 Gferi_RS20555 0836a8c20951c4321302e26f7f7ef2f1 272 SUPERFAMILY SSF52518 4 269 7.77E-93 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS20555 0836a8c20951c4321302e26f7f7ef2f1 272 Gene3D G3DSA:3.40.50.970 2 269 3.4E-115 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS20555 0836a8c20951c4321302e26f7f7ef2f1 272 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 12 269 5.6E-64 T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS14835 64e497587082901e93acfbec4aa4d4b6 251 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 242 2.9E-29 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase Gferi_RS14835 64e497587082901e93acfbec4aa4d4b6 251 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 249 1.3E-103 T 11-11-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Gferi_RS14835 64e497587082901e93acfbec4aa4d4b6 251 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 249 1.0E-97 T 11-11-2016 Gferi_RS14835 64e497587082901e93acfbec4aa4d4b6 251 SUPERFAMILY SSF56219 1 250 4.32E-81 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase Gferi_RS14835 64e497587082901e93acfbec4aa4d4b6 251 Gene3D G3DSA:3.60.10.10 1 250 1.4E-102 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase Gferi_RS14835 64e497587082901e93acfbec4aa4d4b6 251 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 11-11-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Gferi_RS05110 efd23fdf49c388f3160a94a54618ebcf 136 PRINTS PR00502 NUDIX hydrolase family signature 55 70 1.3E-5 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Gferi_RS05110 efd23fdf49c388f3160a94a54618ebcf 136 PRINTS PR00502 NUDIX hydrolase family signature 41 55 1.3E-5 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Gferi_RS05110 efd23fdf49c388f3160a94a54618ebcf 136 Gene3D G3DSA:3.90.79.10 20 135 3.0E-18 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05110 efd23fdf49c388f3160a94a54618ebcf 136 Pfam PF00293 NUDIX domain 25 112 1.7E-10 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS05110 efd23fdf49c388f3160a94a54618ebcf 136 SUPERFAMILY SSF55811 20 129 3.38E-20 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05110 efd23fdf49c388f3160a94a54618ebcf 136 ProSitePatterns PS00893 Nudix box signature. 46 67 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS17005 aae98991ee45b79e6d41a90e4d157df2 230 TIGRFAM TIGR00035 asp_race: aspartate racemase 5 229 2.8E-33 T 11-11-2016 IPR004380 Aspartate racemase GO:0006520|GO:0016855 Gferi_RS17005 aae98991ee45b79e6d41a90e4d157df2 230 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 83 91 - T 11-11-2016 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS17005 aae98991ee45b79e6d41a90e4d157df2 230 Gene3D G3DSA:3.40.50.1860 5 118 4.7E-27 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS17005 aae98991ee45b79e6d41a90e4d157df2 230 SUPERFAMILY SSF53681 5 115 5.67E-23 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS17005 aae98991ee45b79e6d41a90e4d157df2 230 Pfam PF01177 Asp/Glu/Hydantoin racemase 9 222 2.2E-35 T 11-11-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS17005 aae98991ee45b79e6d41a90e4d157df2 230 SUPERFAMILY SSF53681 120 227 1.83E-15 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS17005 aae98991ee45b79e6d41a90e4d157df2 230 Gene3D G3DSA:3.40.50.1860 119 211 3.6E-15 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02810 2b045e4f18f93b623193040986b0eb80 212 Gene3D G3DSA:3.40.50.10420 10 154 8.7E-7 T 11-11-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain Gferi_RS02810 2b045e4f18f93b623193040986b0eb80 212 PIRSF PIRSF020269 1 212 4.1E-65 T 11-11-2016 IPR009501 Uncharacterised conserved protein UCP020269 Gferi_RS02810 2b045e4f18f93b623193040986b0eb80 212 Pfam PF02589 Uncharacterised ACR, YkgG family COG1556 14 206 9.2E-41 T 11-11-2016 IPR003741 LUD domain Gferi_RS04810 477ef86eb6119829f4f56879c0021928 152 Gene3D G3DSA:3.10.180.10 4 151 6.7E-27 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS04810 477ef86eb6119829f4f56879c0021928 152 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 147 1.8E-7 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Gferi_RS04810 477ef86eb6119829f4f56879c0021928 152 SUPERFAMILY SSF54593 6 149 7.56E-21 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS07530 2e4078cdef9e18985b4f9a8a47d55eb4 274 Gene3D G3DSA:3.40.720.10 2 227 9.5E-28 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS07530 2e4078cdef9e18985b4f9a8a47d55eb4 274 SUPERFAMILY SSF53649 1 255 1.53E-39 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS07530 2e4078cdef9e18985b4f9a8a47d55eb4 274 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 5 210 1.8E-15 T 11-11-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 Gferi_RS26625 82d6da737c743f1018ef1a82ac6be07e 372 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 11 371 6.2E-173 T 11-11-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Gferi_RS26625 82d6da737c743f1018ef1a82ac6be07e 372 Gene3D G3DSA:3.20.20.105 2 369 2.1E-173 T 11-11-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Gferi_RS26625 82d6da737c743f1018ef1a82ac6be07e 372 Pfam PF01702 Queuine tRNA-ribosyltransferase 131 364 1.3E-94 T 11-11-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Gferi_RS26625 82d6da737c743f1018ef1a82ac6be07e 372 SUPERFAMILY SSF51713 1 368 3.66E-165 T 11-11-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Gferi_RS26625 82d6da737c743f1018ef1a82ac6be07e 372 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 8 371 7.0E-181 T 11-11-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Gferi_RS26625 82d6da737c743f1018ef1a82ac6be07e 372 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 3 362 58.825 T 11-11-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Gferi_RS24530 9cc639318c4dc5e98e05c243ca5e729b 96 SUPERFAMILY SSF81301 7 96 2.08E-21 T 11-11-2016 Gferi_RS24530 9cc639318c4dc5e98e05c243ca5e729b 96 Pfam PF01909 Nucleotidyltransferase domain 23 93 1.4E-12 T 11-11-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Gferi_RS24530 9cc639318c4dc5e98e05c243ca5e729b 96 Gene3D G3DSA:3.30.460.10 1 95 1.7E-26 T 11-11-2016 Gferi_RS21575 1024e48a8e14a26e9676e0166d3c3c14 418 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 4 412 3.0E-112 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS21575 1024e48a8e14a26e9676e0166d3c3c14 418 PIRSF PIRSF006066 1 418 2.1E-151 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS21575 1024e48a8e14a26e9676e0166d3c3c14 418 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 14 416 5.9E-131 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS20100 a6764255bc8298dc8352ec6eda9b0c9c 475 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 38 63 - T 11-11-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Gferi_RS20100 a6764255bc8298dc8352ec6eda9b0c9c 475 Gene3D G3DSA:1.10.645.10 1 456 2.2E-150 T 11-11-2016 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20100 a6764255bc8298dc8352ec6eda9b0c9c 475 Pfam PF00374 Nickel-dependent hydrogenase 123 456 5.8E-87 T 11-11-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Gferi_RS20100 a6764255bc8298dc8352ec6eda9b0c9c 475 Pfam PF00374 Nickel-dependent hydrogenase 38 117 1.5E-30 T 11-11-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Gferi_RS20100 a6764255bc8298dc8352ec6eda9b0c9c 475 SUPERFAMILY SSF56762 1 456 1.57E-127 T 11-11-2016 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS06015 4e50cdeb30c8fad81da5a104c025f9d2 381 Gene3D G3DSA:3.30.420.40 58 222 1.8E-8 T 11-11-2016 Gferi_RS06015 4e50cdeb30c8fad81da5a104c025f9d2 381 SUPERFAMILY SSF53067 6 190 1.6E-7 T 11-11-2016 Gferi_RS06015 4e50cdeb30c8fad81da5a104c025f9d2 381 SUPERFAMILY SSF53067 205 358 1.84E-15 T 11-11-2016 Gferi_RS24220 642667ef642d9e21ccd4ca3fbf4dbbfc 320 Pfam PF03186 CobD/Cbib protein 5 295 2.2E-103 T 11-11-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Gferi_RS24220 642667ef642d9e21ccd4ca3fbf4dbbfc 320 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 5 295 1.7E-74 T 11-11-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Gferi_RS24220 642667ef642d9e21ccd4ca3fbf4dbbfc 320 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 315 94.209 T 11-11-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 1 199 38.17 T 11-11-2016 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 Gene3D G3DSA:3.40.630.20 1 210 4.4E-72 T 11-11-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 Pfam PF01470 Pyroglutamyl peptidase 1 201 2.9E-86 T 11-11-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 SUPERFAMILY SSF53182 1 212 2.35E-72 T 11-11-2016 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 2 212 1.2E-79 T 11-11-2016 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 128 142 - T 11-11-2016 IPR033694 Pyroglutamyl peptidase I, Cys active site Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 67 83 - T 11-11-2016 IPR033693 Pyroglutamyl peptidase I, Glu active site Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 PIRSF PIRSF015592 1 211 1.8E-83 T 11-11-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 130 146 3.7E-47 T 11-11-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 60 72 3.7E-47 T 11-11-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 3 26 3.7E-47 T 11-11-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 78 98 3.7E-47 T 11-11-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 Gferi_RS08500 80ace6a56c658ef9a74510df508f009b 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 160 172 3.7E-47 T 11-11-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 Gferi_RS17555 7b48fbd88cfc18a5e16fb5a4c768ab3a 284 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS17555 7b48fbd88cfc18a5e16fb5a4c768ab3a 284 SMART SM00382 32 222 9.7E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS17555 7b48fbd88cfc18a5e16fb5a4c768ab3a 284 SUPERFAMILY SSF52540 3 238 1.04E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17555 7b48fbd88cfc18a5e16fb5a4c768ab3a 284 Pfam PF00005 ABC transporter 23 173 1.2E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS17555 7b48fbd88cfc18a5e16fb5a4c768ab3a 284 TIGRFAM TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase 3 278 1.4E-124 T 11-11-2016 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 Gferi_RS17555 7b48fbd88cfc18a5e16fb5a4c768ab3a 284 Gene3D G3DSA:3.40.50.300 3 235 6.3E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06970 2cf4677be80295b1fee97ca556391075 338 Gene3D G3DSA:3.40.50.720 4 244 7.0E-50 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06970 2cf4677be80295b1fee97ca556391075 338 Pfam PF02719 Polysaccharide biosynthesis protein 8 290 4.6E-101 T 11-11-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Gferi_RS06970 2cf4677be80295b1fee97ca556391075 338 SUPERFAMILY SSF51735 5 271 9.03E-59 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS17365 339a2b24cf37e9d551c718bc249c9e80 81 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 3 79 1.7E-13 T 11-11-2016 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 Gferi_RS17365 339a2b24cf37e9d551c718bc249c9e80 81 Gene3D G3DSA:3.30.1330.30 2 80 4.4E-14 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS17365 339a2b24cf37e9d551c718bc249c9e80 81 SUPERFAMILY SSF55315 2 80 6.24E-17 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS17365 339a2b24cf37e9d551c718bc249c9e80 81 PRINTS PR00884 Ribosomal protein HS6 signature 29 40 2.2E-5 T 11-11-2016 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17365 339a2b24cf37e9d551c718bc249c9e80 81 PRINTS PR00884 Ribosomal protein HS6 signature 69 81 2.2E-5 T 11-11-2016 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17365 339a2b24cf37e9d551c718bc249c9e80 81 PRINTS PR00884 Ribosomal protein HS6 signature 55 65 2.2E-5 T 11-11-2016 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17365 339a2b24cf37e9d551c718bc249c9e80 81 PRINTS PR00884 Ribosomal protein HS6 signature 19 29 2.2E-5 T 11-11-2016 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS06560 7876966e909ca22b602ad92c58e093b6 400 Gene3D G3DSA:3.40.50.1100 100 178 1.1E-19 T 11-11-2016 Gferi_RS06560 7876966e909ca22b602ad92c58e093b6 400 SUPERFAMILY SSF53686 7 390 4.45E-150 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS06560 7876966e909ca22b602ad92c58e093b6 400 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 3 392 53.218 T 11-11-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Gferi_RS06560 7876966e909ca22b602ad92c58e093b6 400 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 55 379 3.7E-48 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS06560 7876966e909ca22b602ad92c58e093b6 400 Gene3D G3DSA:3.40.50.1100 179 395 1.5E-95 T 11-11-2016 Gferi_RS06560 7876966e909ca22b602ad92c58e093b6 400 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 82 96 - T 11-11-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Gferi_RS06560 7876966e909ca22b602ad92c58e093b6 400 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 9 391 1.9E-199 T 11-11-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Gferi_RS06560 7876966e909ca22b602ad92c58e093b6 400 PIRSF PIRSF001413 1 398 4.1E-172 T 11-11-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Gferi_RS26070 b8be63eaf4537f24c9af33ff2c54e19a 258 SUPERFAMILY SSF52507 26 137 6.8E-14 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS26070 b8be63eaf4537f24c9af33ff2c54e19a 258 Gene3D G3DSA:3.40.50.1950 26 187 2.2E-14 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS26070 b8be63eaf4537f24c9af33ff2c54e19a 258 Pfam PF02441 Flavoprotein 26 136 1.1E-10 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS22335 784c9800f91ed2a87c98f603cd1077ad 423 PIRSF PIRSF006066 1 423 8.8E-148 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS22335 784c9800f91ed2a87c98f603cd1077ad 423 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 5 413 1.0E-124 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS22335 784c9800f91ed2a87c98f603cd1077ad 423 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 15 418 9.2E-136 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 Gene3D G3DSA:3.40.50.300 3 74 4.7E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 Pfam PF00005 ABC transporter 27 62 2.0E-7 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 Pfam PF00005 ABC transporter 314 437 2.7E-15 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 SMART SM00382 321 483 4.7E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 SMART SM00382 29 173 3.1E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 Pfam PF12848 ABC transporter 167 275 5.9E-7 T 11-11-2016 IPR032781 ABC-transporter extension domain Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 Gene3D G3DSA:3.40.50.300 95 221 1.1E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 Gene3D G3DSA:3.40.50.300 302 480 2.1E-28 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 SUPERFAMILY SSF52540 3 190 8.57E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04975 de9b8d66d69692a466e9f94a8968bef1 487 SUPERFAMILY SSF52540 277 480 8.11E-33 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02595 8793fa748415bbe1db40458d41128cbe 99 Gene3D G3DSA:3.40.50.300 23 70 1.9E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02595 8793fa748415bbe1db40458d41128cbe 99 SUPERFAMILY SSF52540 19 78 5.71E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16025 3e670c3d18e145dd0360559d9bf250fb 221 Gene3D G3DSA:3.30.70.120 125 218 2.5E-8 T 11-11-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Gferi_RS16025 3e670c3d18e145dd0360559d9bf250fb 221 SUPERFAMILY SSF54913 8 105 9.18E-10 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta Gferi_RS16025 3e670c3d18e145dd0360559d9bf250fb 221 SUPERFAMILY SSF54913 124 219 1.5E-16 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta Gferi_RS24270 f2d21167d668b4e883186be614e47ea8 356 Pfam PF01890 Cobalamin synthesis G C-terminus 224 341 1.0E-30 T 11-11-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 Gferi_RS24270 f2d21167d668b4e883186be614e47ea8 356 Pfam PF11761 Cobalamin biosynthesis central region 136 221 6.9E-8 T 11-11-2016 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 Gferi_RS24270 f2d21167d668b4e883186be614e47ea8 356 Pfam PF11760 Cobalamin synthesis G N-terminal 51 131 1.4E-36 T 11-11-2016 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 Gferi_RS24270 f2d21167d668b4e883186be614e47ea8 356 Gene3D G3DSA:3.30.420.180 216 344 2.5E-41 T 11-11-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 Gferi_RS24270 f2d21167d668b4e883186be614e47ea8 356 SUPERFAMILY SSF159672 1 231 7.06E-61 T 11-11-2016 Gferi_RS24270 f2d21167d668b4e883186be614e47ea8 356 SUPERFAMILY SSF159664 217 342 2.49E-35 T 11-11-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 Gferi_RS19395 bc68636872c557b2481a4386b947ef9a 127 SUPERFAMILY SSF47413 1 69 3.22E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19395 bc68636872c557b2481a4386b947ef9a 127 Pfam PF01381 Helix-turn-helix 8 61 4.8E-14 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS19395 bc68636872c557b2481a4386b947ef9a 127 Gene3D G3DSA:3.10.120.10 60 115 3.4E-4 T 11-11-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain Gferi_RS19395 bc68636872c557b2481a4386b947ef9a 127 Gene3D G3DSA:1.10.260.40 1 59 5.4E-22 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19395 bc68636872c557b2481a4386b947ef9a 127 SMART SM00530 6 61 5.3E-15 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS03260 84a70dd51de5fe9b53d9c456d3a99c18 275 Pfam PF07833 Copper amine oxidase N-terminal domain 142 234 1.2E-31 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS03260 84a70dd51de5fe9b53d9c456d3a99c18 275 SUPERFAMILY SSF55383 145 228 7.85E-29 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS03260 84a70dd51de5fe9b53d9c456d3a99c18 275 Gene3D G3DSA:3.30.457.10 154 224 2.8E-31 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS03260 84a70dd51de5fe9b53d9c456d3a99c18 275 Gene3D G3DSA:3.30.457.10 128 153 1.3E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS17165 cf6c767eca8c373e66012c2ac377362e 373 Pfam PF13638 PIN domain 175 289 1.1E-4 T 11-11-2016 IPR002716 PIN domain Gferi_RS17165 cf6c767eca8c373e66012c2ac377362e 373 SMART SM00670 172 279 2.6E-11 T 11-11-2016 IPR002716 PIN domain Gferi_RS17165 cf6c767eca8c373e66012c2ac377362e 373 Gene3D G3DSA:3.40.50.1010 174 301 1.2E-32 T 11-11-2016 IPR029060 PIN domain-like Gferi_RS17165 cf6c767eca8c373e66012c2ac377362e 373 Pfam PF01938 TRAM domain 303 352 6.9E-5 T 11-11-2016 IPR002792 TRAM domain Gferi_RS17165 cf6c767eca8c373e66012c2ac377362e 373 SUPERFAMILY SSF88723 174 300 1.86E-24 T 11-11-2016 IPR029060 PIN domain-like Gferi_RS00335 b94bef7d1579c523b5b3eb8f8c1a53bb 173 PIRSF PIRSF021435 2 173 2.2E-43 T 11-11-2016 IPR014198 Stage III sporulation protein AB Gferi_RS00335 b94bef7d1579c523b5b3eb8f8c1a53bb 173 TIGRFAM TIGR02833 spore_III_AB: stage III sporulation protein AB 4 173 3.6E-47 T 11-11-2016 IPR014198 Stage III sporulation protein AB Gferi_RS00335 b94bef7d1579c523b5b3eb8f8c1a53bb 173 Pfam PF09548 Stage III sporulation protein AB (spore_III_AB) 4 173 2.9E-47 T 11-11-2016 IPR014198 Stage III sporulation protein AB Gferi_RS25595 1fe465d43a52022d1462086474152980 215 Hamap MF_00494 Probable transaldolase [tal]. 1 214 46.722 T 11-11-2016 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Gferi_RS25595 1fe465d43a52022d1462086474152980 215 ProSitePatterns PS00958 Transaldolase active site. 80 97 - T 11-11-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 Gferi_RS25595 1fe465d43a52022d1462086474152980 215 Gene3D G3DSA:3.20.20.70 1 212 1.3E-70 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS25595 1fe465d43a52022d1462086474152980 215 Pfam PF00923 Transaldolase 3 199 2.5E-55 T 11-11-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 Gferi_RS25595 1fe465d43a52022d1462086474152980 215 SUPERFAMILY SSF51569 1 212 4.29E-79 T 11-11-2016 Gferi_RS25595 1fe465d43a52022d1462086474152980 215 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 11-11-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 Gferi_RS25595 1fe465d43a52022d1462086474152980 215 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 212 3.5E-96 T 11-11-2016 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 Gene3D G3DSA:3.40.50.970 312 457 9.5E-33 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 SUPERFAMILY SSF52518 2 327 2.16E-72 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 Pfam PF02779 Transketolase, pyrimidine binding domain 297 457 3.6E-39 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 Gene3D G3DSA:3.40.50.920 476 601 3.5E-34 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 Pfam PF02780 Transketolase, C-terminal domain 476 592 1.8E-31 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 2 261 3.4E-114 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 1 602 42.633 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 SUPERFAMILY SSF52922 469 601 1.83E-32 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 ProSitePatterns PS00802 Transketolase signature 2. 402 418 - T 11-11-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 2 601 2.2E-235 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 Gene3D G3DSA:3.40.50.970 221 311 1.6E-71 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 Gene3D G3DSA:3.40.50.970 2 176 1.6E-71 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 SMART SM00861 296 460 5.1E-65 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS03560 8aaa6e278aa57c7de709f96fa5181a21 624 SUPERFAMILY SSF52518 270 459 4.32E-60 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS03545 c8399140f229f443d25fc8dac1387c10 368 Pfam PF11187 Protein of unknown function (DUF2974) 82 304 3.7E-83 T 11-11-2016 IPR024499 Protein of unknown function DUF2974 Gferi_RS03545 c8399140f229f443d25fc8dac1387c10 368 SUPERFAMILY SSF53474 89 252 1.46E-9 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS03545 c8399140f229f443d25fc8dac1387c10 368 Gene3D G3DSA:3.40.50.1820 109 212 5.6E-5 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS10710 847933d10b3c8ae142cb09bbdd8953b9 128 PIRSF PIRSF039090 1 128 5.8E-35 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 Gferi_RS10710 847933d10b3c8ae142cb09bbdd8953b9 128 SUPERFAMILY SSF101116 8 127 2.49E-37 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 Gferi_RS10710 847933d10b3c8ae142cb09bbdd8953b9 128 Pfam PF02561 Flagellar protein FliS 10 122 5.8E-38 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 Gferi_RS10710 847933d10b3c8ae142cb09bbdd8953b9 128 TIGRFAM TIGR00208 fliS: flagellar protein FliS 8 122 2.1E-31 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 Gferi_RS10710 847933d10b3c8ae142cb09bbdd8953b9 128 Gene3D G3DSA:1.20.120.340 8 126 1.2E-39 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 Gene3D G3DSA:3.40.47.10 194 275 3.9E-80 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 Gene3D G3DSA:3.40.47.10 3 123 3.9E-80 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 Gene3D G3DSA:3.40.47.10 142 193 1.9E-75 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 Gene3D G3DSA:3.40.47.10 276 391 1.9E-75 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 2.0E-155 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 PIRSF PIRSF000429 1 392 2.9E-142 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 SUPERFAMILY SSF53901 3 269 8.04E-93 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 Pfam PF02803 Thiolase, C-terminal domain 270 391 2.1E-53 T 11-11-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 11-11-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 11-11-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 Pfam PF00108 Thiolase, N-terminal domain 4 262 1.5E-107 T 11-11-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 SUPERFAMILY SSF53901 270 391 5.55E-47 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS11720 01c01bdcfe2e2a3f80add1d82a5f95e0 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 11-11-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 Gene3D G3DSA:1.10.10.10 6 48 6.2E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 Pfam PF08220 DeoR-like helix-turn-helix domain 8 60 1.4E-15 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 Gene3D G3DSA:3.40.50.1360 79 222 3.3E-11 T 11-11-2016 Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 SMART SM01134 75 241 1.5E-54 T 11-11-2016 Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 SUPERFAMILY SSF46785 6 75 1.51E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 Pfam PF00455 DeoR C terminal sensor domain 77 240 1.4E-42 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 11-11-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 40 4.4E-7 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 40 58 4.4E-7 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 SMART SM00420 8 60 3.7E-16 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS07510 e665a24e7a7a1dbd0136b2cf6d807cfd 261 SUPERFAMILY SSF100950 77 241 8.27E-29 T 11-11-2016 Gferi_RS19765 dcc39f4e03fd7aa67d3e5f6555b7e862 365 SUPERFAMILY SSF53822 49 365 3.14E-71 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS19765 dcc39f4e03fd7aa67d3e5f6555b7e862 365 Pfam PF13407 Periplasmic binding protein domain 51 311 1.1E-55 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS19765 dcc39f4e03fd7aa67d3e5f6555b7e862 365 Gene3D G3DSA:3.40.50.2300 176 313 1.7E-28 T 11-11-2016 Gferi_RS19765 dcc39f4e03fd7aa67d3e5f6555b7e862 365 Gene3D G3DSA:3.40.50.2300 50 175 2.8E-25 T 11-11-2016 Gferi_RS20930 b512e3b7fa009df22eedbf5b847b02c2 319 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 312 35.304 T 11-11-2016 IPR003802 Sporulation regulator WhiA GO:0043937 Gferi_RS20930 b512e3b7fa009df22eedbf5b847b02c2 319 SUPERFAMILY SSF55608 126 227 1.98E-18 T 11-11-2016 IPR027434 Homing endonuclease GO:0004519 Gferi_RS20930 b512e3b7fa009df22eedbf5b847b02c2 319 Gene3D G3DSA:3.10.28.10 120 206 1.5E-11 T 11-11-2016 IPR027434 Homing endonuclease GO:0004519 Gferi_RS20930 b512e3b7fa009df22eedbf5b847b02c2 319 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 19 107 1.1E-27 T 11-11-2016 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain Gferi_RS20930 b512e3b7fa009df22eedbf5b847b02c2 319 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 5 310 1.0E-105 T 11-11-2016 Gferi_RS20930 b512e3b7fa009df22eedbf5b847b02c2 319 Pfam PF14527 WhiA LAGLIDADG-like domain 132 223 2.5E-35 T 11-11-2016 Gferi_RS20930 b512e3b7fa009df22eedbf5b847b02c2 319 Pfam PF02650 WhiA C-terminal HTH domain 226 309 5.3E-37 T 11-11-2016 IPR023054 Sporulation regulator WhiA, C-terminal Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 13 199 3.8E-26 T 11-11-2016 IPR006483 CRISPR-associated Cas3-HD domain Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 Pfam PF00271 Helicase conserved C-terminal domain 446 554 1.7E-5 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 Gene3D G3DSA:1.10.238.10 625 667 8.4E-4 T 11-11-2016 IPR011992 EF-hand domain pair Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 SUPERFAMILY SSF52540 242 287 6.68E-27 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 SUPERFAMILY SSF52540 317 556 6.68E-27 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 Gene3D G3DSA:3.40.50.300 236 254 2.1E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 Gene3D G3DSA:3.40.50.300 455 528 2.1E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 SMART SM00487 227 440 0.0012 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 246 592 7.5E-72 T 11-11-2016 IPR006474 Helicase Cas3, CRISPR-associated, core Gferi_RS15630 80e4665dee5b4ddf02fd69e6fdfdefe6 748 Gene3D G3DSA:3.40.50.300 255 408 4.2E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04080 3975af5a92371defe3c5676118720700 434 Pfam PF02386 Cation transport protein 24 414 3.7E-64 T 11-11-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Gferi_RS04080 3975af5a92371defe3c5676118720700 434 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 15 403 3.5E-110 T 11-11-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 Gferi_RS12830 55270c6cace2ba370845d7eb588b92db 405 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 405 140.252 T 11-11-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS12830 55270c6cace2ba370845d7eb588b92db 405 Pfam PF01960 ArgJ family 17 405 2.1E-146 T 11-11-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS12830 55270c6cace2ba370845d7eb588b92db 405 Gene3D G3DSA:3.60.70.12 7 274 1.6E-97 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS12830 55270c6cace2ba370845d7eb588b92db 405 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 7 405 5.8E-145 T 11-11-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS12830 55270c6cace2ba370845d7eb588b92db 405 SUPERFAMILY SSF56266 13 401 7.46E-132 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS12830 55270c6cace2ba370845d7eb588b92db 405 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 23 403 1.0E-117 T 11-11-2016 Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 Gene3D G3DSA:3.30.70.890 164 286 6.2E-34 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 Pfam PF00288 GHMP kinases N terminal domain 87 144 8.1E-8 T 11-11-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 SUPERFAMILY SSF54211 4 158 7.59E-41 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 PIRSF PIRSF010376 2 287 1.1E-87 T 11-11-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 Pfam PF08544 GHMP kinases C terminal 201 275 1.2E-10 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 SUPERFAMILY SSF55060 164 281 1.36E-26 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 PRINTS PR00958 Homoserine kinase signature 8 23 5.3E-5 T 11-11-2016 Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 PRINTS PR00958 Homoserine kinase signature 168 185 5.3E-5 T 11-11-2016 Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 PRINTS PR00958 Homoserine kinase signature 241 256 5.3E-5 T 11-11-2016 Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 4 285 33.189 T 11-11-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4 285 1.5E-81 T 11-11-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Gferi_RS11600 5f3d0b0234a5ccb9a9339a5e6af24f3a 288 Gene3D G3DSA:3.30.230.10 6 158 9.7E-51 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS15965 ad976289405fba6e976eba86bc44a809 110 Gene3D G3DSA:1.10.10.10 3 59 8.0E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15965 ad976289405fba6e976eba86bc44a809 110 SUPERFAMILY SSF48295 1 57 7.85E-14 T 11-11-2016 IPR010921 Trp repressor/replication initiator GO:0043565 Gferi_RS15965 ad976289405fba6e976eba86bc44a809 110 Pfam PF01527 Transposase 1 54 1.3E-9 T 11-11-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 SUPERFAMILY SSF55874 238 404 8.77E-48 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 Gene3D G3DSA:1.10.287.130 181 235 2.4E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 Pfam PF00512 His Kinase A (phospho-acceptor) domain 183 248 2.1E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 SMART SM00388 182 249 1.4E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 295 404 1.2E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 Gene3D G3DSA:3.30.565.10 236 405 1.4E-48 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 SMART SM00387 294 406 4.6E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 SUPERFAMILY SSF47384 170 248 9.42E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 8.7E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 8.7E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 345 8.7E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS24925 dd067eb9149edd31d92ecfdd62d634f3 410 PRINTS PR00344 Bacterial sensor protein C-terminal signature 349 359 8.7E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 Gene3D G3DSA:2.70.98.40 2050 2372 2.2E-88 T 11-11-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 Gene3D G3DSA:2.70.98.40 1563 1854 1.3E-85 T 11-11-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 SUPERFAMILY SSF74650 1560 1820 2.07E-66 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 SUPERFAMILY SSF74650 2050 2314 1.82E-77 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2344 2770 6.3E-132 T 11-11-2016 IPR033432 Glycosyl hydrolase 36, catalytic domain Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 Pfam PF06165 Glycosyltransferase family 36 2073 2312 1.5E-77 T 11-11-2016 IPR010383 Glycosyl hydrolase 94 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 Pfam PF06165 Glycosyltransferase family 36 1573 1819 1.7E-66 T 11-11-2016 IPR010383 Glycosyl hydrolase 94 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 SUPERFAMILY SSF48208 2321 2845 3.26E-97 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 Gene3D G3DSA:2.60.420.10 2766 2814 8.6E-8 T 11-11-2016 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 Pfam PF10091 Putative glucoamylase 1308 1521 1.3E-16 T 11-11-2016 IPR019282 Domain of unknown function DUF2329 Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 SMART SM01068 2050 2115 1.4E-34 T 11-11-2016 IPR009342 Putative carbohydrate binding domain Gferi_RS10080 115d6490cb2ec8dfb7dd2f670e9465bb 2846 SMART SM01068 1550 1610 1.1E-12 T 11-11-2016 IPR009342 Putative carbohydrate binding domain Gferi_RS02650 2288a47638d28eca69bd0323aca79adb 196 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 192 5.5E-57 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Gferi_RS02650 2288a47638d28eca69bd0323aca79adb 196 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 4 193 22.845 T 11-11-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 Gferi_RS02650 2288a47638d28eca69bd0323aca79adb 196 PIRSF PIRSF006102 4 196 3.0E-58 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Gferi_RS16290 ff40a761b00d347d37256bbf31cfff0b 292 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 6 225 4.6E-66 T 11-11-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Gferi_RS16290 ff40a761b00d347d37256bbf31cfff0b 292 PIRSF PIRSF015582 1 292 2.8E-84 T 11-11-2016 IPR011206 Citrate lyase beta subunit-like Gferi_RS16290 ff40a761b00d347d37256bbf31cfff0b 292 SUPERFAMILY SSF51621 2 236 1.95E-62 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS16290 ff40a761b00d347d37256bbf31cfff0b 292 Gene3D G3DSA:3.20.20.60 2 236 4.8E-75 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 SUPERFAMILY SSF46785 1 76 4.84E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 5.0E-10 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 5.0E-10 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 1.9E-21 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 SMART SM00345 14 73 2.1E-18 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 SMART SM00895 98 223 2.4E-19 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 SUPERFAMILY SSF48008 97 228 2.88E-22 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 Pfam PF07729 FCD domain 98 222 1.9E-21 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 Gene3D G3DSA:1.10.10.10 5 75 3.5E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22825 62c07572a07ef40c9fa9d7288ead760c 236 Gene3D G3DSA:1.20.120.530 97 230 3.9E-23 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS15310 e3d114e39bacd9ad8b239747e5755f99 230 Pfam PF00072 Response regulator receiver domain 6 115 2.1E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15310 e3d114e39bacd9ad8b239747e5755f99 230 Gene3D G3DSA:3.40.50.2300 2 122 1.8E-41 T 11-11-2016 Gferi_RS15310 e3d114e39bacd9ad8b239747e5755f99 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 2.5E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS15310 e3d114e39bacd9ad8b239747e5755f99 230 SUPERFAMILY SSF52172 2 126 4.55E-42 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS15310 e3d114e39bacd9ad8b239747e5755f99 230 Gene3D G3DSA:1.10.10.10 127 225 3.4E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15310 e3d114e39bacd9ad8b239747e5755f99 230 SUPERFAMILY SSF46894 124 225 1.28E-32 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS15310 e3d114e39bacd9ad8b239747e5755f99 230 SMART SM00448 4 114 1.6E-44 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15310 e3d114e39bacd9ad8b239747e5755f99 230 SMART SM00862 149 224 3.9E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS04310 e1665869d6194f060f435a919d5a852f 229 SUPERFAMILY SSF54862 151 225 1.88E-9 T 11-11-2016 Gferi_RS04310 e1665869d6194f060f435a919d5a852f 229 Gene3D G3DSA:3.30.70.20 152 223 4.4E-9 T 11-11-2016 Gferi_RS04310 e1665869d6194f060f435a919d5a852f 229 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 161 172 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS04310 e1665869d6194f060f435a919d5a852f 229 Pfam PF13484 4Fe-4S double cluster binding domain 160 222 4.4E-8 T 11-11-2016 Gferi_RS02295 59cb67ce1beb696ca1be0bc3fbb9d8dd 330 Hamap MF_01562 UPF0365 protein . 1 321 48.123 T 11-11-2016 IPR022853 Uncharacterised protein family YdfA-immunity Gferi_RS02295 59cb67ce1beb696ca1be0bc3fbb9d8dd 330 Pfam PF12127 SigmaW regulon antibacterial 8 318 2.6E-166 T 11-11-2016 IPR022853 Uncharacterised protein family YdfA-immunity Gferi_RS16220 58be5436bc0479551756cca6ad56b9ca 708 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 121 689 3.1E-191 T 11-11-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Gferi_RS16220 58be5436bc0479551756cca6ad56b9ca 708 Gene3D G3DSA:3.20.70.20 127 672 5.4E-209 T 11-11-2016 Gferi_RS16220 58be5436bc0479551756cca6ad56b9ca 708 Pfam PF03477 ATP cone domain 4 93 7.9E-19 T 11-11-2016 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Gferi_RS16220 58be5436bc0479551756cca6ad56b9ca 708 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 121 688 2.7E-174 T 11-11-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Gferi_RS16220 58be5436bc0479551756cca6ad56b9ca 708 SUPERFAMILY SSF51998 122 673 6.41E-161 T 11-11-2016 Gferi_RS01575 bf7c07d995a70154d73defcfa1f985de 314 Pfam PF03060 Nitronate monooxygenase 82 301 3.5E-56 T 11-11-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Gferi_RS01575 bf7c07d995a70154d73defcfa1f985de 314 Pfam PF03060 Nitronate monooxygenase 4 81 2.7E-22 T 11-11-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Gferi_RS01575 bf7c07d995a70154d73defcfa1f985de 314 TIGRFAM TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II 5 305 1.7E-156 T 11-11-2016 IPR017569 Enoyl-(acyl-carrier-protein) reductase II, putative Gferi_RS01575 bf7c07d995a70154d73defcfa1f985de 314 SUPERFAMILY SSF51412 3 311 1.68E-78 T 11-11-2016 Gferi_RS01575 bf7c07d995a70154d73defcfa1f985de 314 Gene3D G3DSA:3.20.20.70 2 295 2.7E-78 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS25275 51fd03bbb78f64899b250445f1280e1e 230 Pfam PF03099 Biotin/lipoate A/B protein ligase family 55 165 5.6E-13 T 11-11-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 Gferi_RS25275 51fd03bbb78f64899b250445f1280e1e 230 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 75 90 - T 11-11-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Gferi_RS25275 51fd03bbb78f64899b250445f1280e1e 230 Hamap MF_00013 Octanoyltransferase [lipB]. 2 213 33.582 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS25275 51fd03bbb78f64899b250445f1280e1e 230 PIRSF PIRSF016262 1 224 2.1E-63 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS25275 51fd03bbb78f64899b250445f1280e1e 230 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 79 126 4.0E-12 T 11-11-2016 Gferi_RS25275 51fd03bbb78f64899b250445f1280e1e 230 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 28 210 4.0E-51 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS25275 51fd03bbb78f64899b250445f1280e1e 230 SUPERFAMILY SSF55681 2 212 4.47E-60 T 11-11-2016 Gferi_RS25275 51fd03bbb78f64899b250445f1280e1e 230 Gene3D G3DSA:3.90.1550.10 3 210 6.0E-68 T 11-11-2016 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 227 253 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 37 256 4.2E-84 T 11-11-2016 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 256 1.4E-37 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 66 79 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 Pfam PF04542 Sigma-70 region 2 42 111 2.3E-18 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 Pfam PF04545 Sigma-70, region 4 206 255 4.8E-16 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 Gene3D G3DSA:1.10.10.10 110 165 8.6E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 Gene3D G3DSA:1.10.601.10 14 109 5.8E-34 T 11-11-2016 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 SUPERFAMILY SSF88659 114 189 6.98E-17 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 SUPERFAMILY SSF88946 6 110 2.62E-34 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 PRINTS PR00046 Major sigma-70 factor signature 242 253 1.0E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 PRINTS PR00046 Major sigma-70 factor signature 210 222 1.0E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 PRINTS PR00046 Major sigma-70 factor signature 227 242 1.0E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 PRINTS PR00046 Major sigma-70 factor signature 90 98 1.0E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 PRINTS PR00046 Major sigma-70 factor signature 66 79 1.0E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 SUPERFAMILY SSF88659 175 257 4.86E-18 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 Pfam PF04539 Sigma-70 region 3 123 174 2.8E-8 T 11-11-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 Gene3D G3DSA:1.10.10.10 203 256 1.5E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01905 fbb49e262c15554ac81feabfea9e0604 257 TIGRFAM TIGR02850 spore_sigG: RNA polymerase sigma-G factor 4 257 4.6E-152 T 11-11-2016 IPR014212 RNA polymerase sigma-G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 Gene3D G3DSA:2.30.30.100 277 325 3.7E-11 T 11-11-2016 Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 SUPERFAMILY SSF50037 278 324 1.83E-7 T 11-11-2016 IPR008988 Transcriptional repressor, C-terminal Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 Gene3D G3DSA:3.30.930.10 72 259 8.6E-62 T 11-11-2016 Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 Pfam PF02237 Biotin protein ligase C terminal domain 276 323 1.2E-9 T 11-11-2016 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 Gene3D G3DSA:1.10.10.10 2 59 2.7E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 Pfam PF08279 HTH domain 3 56 3.3E-16 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 SUPERFAMILY SSF46785 4 58 7.39E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 82 322 2.2E-64 T 11-11-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 4 323 36.638 T 11-11-2016 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 Pfam PF03099 Biotin/lipoate A/B protein ligase family 86 210 7.5E-19 T 11-11-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 Gferi_RS16915 07d8687d4235807853f4d8c29513f069 329 SUPERFAMILY SSF55681 69 259 3.15E-58 T 11-11-2016 Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 Gene3D G3DSA:2.40.50.140 283 341 3.0E-7 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 SUPERFAMILY SSF52540 4 240 2.3E-80 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 Gene3D G3DSA:3.40.50.300 3 234 3.2E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 SMART SM00382 28 211 2.6E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 SUPERFAMILY SSF50331 237 356 1.07E-17 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 Pfam PF00005 ABC transporter 20 161 3.2E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 Pfam PF08402 TOBE domain 279 348 6.2E-8 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 Gene3D G3DSA:2.40.50.100 342 356 2.2E-8 T 11-11-2016 Gferi_RS19265 5d26d62446e22001ce54044f633275b7 364 Gene3D G3DSA:2.40.50.100 240 282 2.2E-8 T 11-11-2016 Gferi_RS19380 d199b0edcb893ec66e8021f87063eef5 156 SUPERFAMILY SSF46785 10 147 1.0E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19380 d199b0edcb893ec66e8021f87063eef5 156 Pfam PF01047 MarR family 36 93 4.2E-11 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS19380 d199b0edcb893ec66e8021f87063eef5 156 SMART SM00347 29 129 8.7E-18 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS19380 d199b0edcb893ec66e8021f87063eef5 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 3.0E-6 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS19380 d199b0edcb893ec66e8021f87063eef5 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 3.0E-6 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS19380 d199b0edcb893ec66e8021f87063eef5 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 3.0E-6 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS19380 d199b0edcb893ec66e8021f87063eef5 156 Gene3D G3DSA:1.10.10.10 7 145 1.6E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19380 d199b0edcb893ec66e8021f87063eef5 156 ProSitePatterns PS01117 MarR-type HTH domain signature. 68 102 - T 11-11-2016 IPR023187 Transcriptional regulator MarR-type, conserved site Gferi_RS05480 64ae84d487380250418c91d7f70bbd05 539 Pfam PF00395 S-layer homology domain 359 398 9.5E-4 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS05480 64ae84d487380250418c91d7f70bbd05 539 Pfam PF00395 S-layer homology domain 479 522 2.0E-13 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS05480 64ae84d487380250418c91d7f70bbd05 539 Pfam PF00395 S-layer homology domain 418 461 4.5E-11 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS05480 64ae84d487380250418c91d7f70bbd05 539 SMART SM00636 41 342 5.3E-21 T 11-11-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 Gferi_RS05480 64ae84d487380250418c91d7f70bbd05 539 SUPERFAMILY SSF51445 313 346 7.06E-46 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS05480 64ae84d487380250418c91d7f70bbd05 539 SUPERFAMILY SSF51445 42 243 7.06E-46 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS05480 64ae84d487380250418c91d7f70bbd05 539 Gene3D G3DSA:3.20.20.80 55 348 2.2E-42 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS05480 64ae84d487380250418c91d7f70bbd05 539 Pfam PF00704 Glycosyl hydrolases family 18 41 341 3.9E-35 T 11-11-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 Pfam PF01820 D-ala D-ala ligase N-terminus 6 138 6.8E-36 T 11-11-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 304 333 - T 11-11-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 SUPERFAMILY SSF52440 4 147 6.14E-38 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 7 362 3.4E-113 T 11-11-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 115 126 - T 11-11-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 Gene3D G3DSA:3.40.50.20 3 137 1.8E-38 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 Pfam PF07478 D-ala D-ala ligase C-terminus 156 360 3.7E-80 T 11-11-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 PIRSF PIRSF039102 2 369 8.6E-123 T 11-11-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 SUPERFAMILY SSF56059 148 366 1.3E-58 T 11-11-2016 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 Gene3D G3DSA:3.30.1490.20 174 234 5.2E-22 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 Gene3D G3DSA:3.30.470.20 235 368 2.7E-53 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS11555 d3f4fe9fbabecca0538c0d3d2838cfcc 369 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 5 363 44.038 T 11-11-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 272 6.1E-61 T 11-11-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 Gene3D G3DSA:3.40.710.10 14 290 1.2E-88 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 136 149 2.5E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 109 126 2.5E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 61 72 2.5E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 Gene3D G3DSA:2.60.410.10 292 382 9.8E-19 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 294 381 1.5E-15 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 SUPERFAMILY SSF56601 5 291 1.78E-70 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 SUPERFAMILY SSF69189 283 380 8.24E-18 T 11-11-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS26435 0e37866950a111b88d312be3c52a31fe 457 SMART SM00936 291 382 6.9E-21 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 Gene3D G3DSA:1.10.10.10 2 88 6.2E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 2.8E-23 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 38 2.8E-23 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 2.8E-23 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 2.8E-23 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 29 47 - T 11-11-2016 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 SMART SM00418 6 84 1.5E-29 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 Pfam PF01022 Bacterial regulatory protein, arsR family 13 58 2.9E-17 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS06460 dfab0611bb0017119a0fb35e89fcfc5f 111 SUPERFAMILY SSF46785 3 83 6.36E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13675 0d4744beba1bb4552f9e4532e715dddb 663 Pfam PF02272 DHHA1 domain 596 646 1.6E-5 T 11-11-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Gferi_RS13675 0d4744beba1bb4552f9e4532e715dddb 663 Pfam PF01368 DHH family 350 503 1.0E-23 T 11-11-2016 IPR001667 DDH domain Gferi_RS13675 0d4744beba1bb4552f9e4532e715dddb 663 SUPERFAMILY SSF64182 350 645 2.22E-62 T 11-11-2016 Gferi_RS13675 0d4744beba1bb4552f9e4532e715dddb 663 PIRSF PIRSF026583 1 663 1.2E-218 T 11-11-2016 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA Gferi_RS13675 0d4744beba1bb4552f9e4532e715dddb 663 Gene3D G3DSA:3.90.1640.10 350 540 3.8E-39 T 11-11-2016 Gferi_RS16780 1ec8e7bf9a9547817d91fd80dcd2ccfc 310 Pfam PF08486 Stage II sporulation protein 50 136 1.3E-21 T 11-11-2016 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal Gferi_RS16780 1ec8e7bf9a9547817d91fd80dcd2ccfc 310 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 50 306 1.0E-60 T 11-11-2016 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 Gferi_RS24505 eb12a707f0ccd41e58859b8afc36a5be 230 Pfam PF02080 TrkA-C domain 154 219 3.4E-9 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS24505 eb12a707f0ccd41e58859b8afc36a5be 230 SUPERFAMILY SSF116726 140 219 1.96E-13 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS24505 eb12a707f0ccd41e58859b8afc36a5be 230 Gene3D G3DSA:3.30.70.1450 151 220 1.3E-12 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Gferi_RS01815 7f836349164573d05734edd3be301996 231 SUPERFAMILY SSF51419 1 225 1.57E-74 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS01815 7f836349164573d05734edd3be301996 231 Pfam PF01168 Alanine racemase, N-terminal domain 19 227 8.4E-21 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS01815 7f836349164573d05734edd3be301996 231 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 74 88 - T 11-11-2016 IPR011078 Uncharacterised protein family UPF0001 Gferi_RS01815 7f836349164573d05734edd3be301996 231 PIRSF PIRSF004848 1 231 6.0E-78 T 11-11-2016 IPR011078 Uncharacterised protein family UPF0001 Gferi_RS01815 7f836349164573d05734edd3be301996 231 Gene3D G3DSA:3.20.20.10 1 230 3.2E-85 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS01815 7f836349164573d05734edd3be301996 231 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 227 1.3E-60 T 11-11-2016 IPR011078 Uncharacterised protein family UPF0001 Gferi_RS07005 80abf57b26aab5ed3210608be49d6562 506 TIGRFAM TIGR03721 exospore_TM: BclB C-terminal domain 333 506 4.7E-56 T 11-11-2016 IPR021210 Exosporium BclB, C-terminal Gferi_RS07005 80abf57b26aab5ed3210608be49d6562 506 Pfam PF01391 Collagen triple helix repeat (20 copies) 177 235 1.9E-8 T 11-11-2016 IPR008160 Collagen triple helix repeat Gferi_RS07005 80abf57b26aab5ed3210608be49d6562 506 Pfam PF01391 Collagen triple helix repeat (20 copies) 276 334 3.8E-8 T 11-11-2016 IPR008160 Collagen triple helix repeat Gferi_RS07005 80abf57b26aab5ed3210608be49d6562 506 Pfam PF01391 Collagen triple helix repeat (20 copies) 225 282 5.5E-7 T 11-11-2016 IPR008160 Collagen triple helix repeat Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 Gene3D G3DSA:3.20.20.120 130 364 6.0E-68 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 Gene3D G3DSA:3.30.390.10 1 129 5.7E-46 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 SMART SM00922 143 235 7.9E-20 T 11-11-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 SUPERFAMILY SSF54826 1 126 1.77E-31 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 10 333 8.8E-108 T 11-11-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 Hamap MF_01933 o-succinylbenzoate synthase [menC]. 1 361 43.033 T 11-11-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 SUPERFAMILY SSF51604 114 365 5.63E-65 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 7 125 5.6E-14 T 11-11-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Gferi_RS22535 f113ceadad73ec3588858afe8be0486b 370 Pfam PF13378 Enolase C-terminal domain-like 147 354 5.0E-43 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS11275 0b3fca9ffed368af3df1c842da5ee936 613 Gene3D G3DSA:3.90.25.10 467 546 1.2E-7 T 11-11-2016 Gferi_RS11275 0b3fca9ffed368af3df1c842da5ee936 613 SUPERFAMILY SSF51735 285 549 2.86E-63 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11275 0b3fca9ffed368af3df1c842da5ee936 613 Pfam PF13727 CoA-binding domain 65 243 3.0E-20 T 11-11-2016 Gferi_RS11275 0b3fca9ffed368af3df1c842da5ee936 613 Pfam PF02719 Polysaccharide biosynthesis protein 288 570 6.7E-128 T 11-11-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Gferi_RS11275 0b3fca9ffed368af3df1c842da5ee936 613 SUPERFAMILY SSF51735 144 274 9.45E-18 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11275 0b3fca9ffed368af3df1c842da5ee936 613 Gene3D G3DSA:3.40.50.720 139 253 6.8E-17 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11275 0b3fca9ffed368af3df1c842da5ee936 613 Gene3D G3DSA:3.40.50.720 286 466 8.7E-58 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05340 8bf876dd38ad86c71a1609fd9a7a494b 68 Pfam PF07870 Protein of unknown function (DUF1657) 7 54 1.5E-17 T 11-11-2016 IPR012452 Protein of unknown function DUF1657 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 207 397 5.0E-84 T 11-11-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 PIRSF PIRSF001259 2 402 1.0E-188 T 11-11-2016 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 Pfam PF00925 GTP cyclohydrolase II 207 373 2.5E-78 T 11-11-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 Gene3D G3DSA:3.90.870.10 2 211 1.0E-96 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 204 399 43.769 T 11-11-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 198 2.1E-84 T 11-11-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 3 395 55.446 T 11-11-2016 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 4 199 2.6E-78 T 11-11-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 2 203 39.45 T 11-11-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 SUPERFAMILY SSF142695 205 376 4.97E-76 T 11-11-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 Gferi_RS20210 f9d1f68793ed1e50751978f4f1912191 402 SUPERFAMILY SSF55821 3 203 1.21E-83 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain Gferi_RS23825 ec3d83c13b01bdbcf0278c2ff7388069 235 SUPERFAMILY SSF56037 50 229 6.54E-38 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS23825 ec3d83c13b01bdbcf0278c2ff7388069 235 Gene3D G3DSA:3.50.40.10 79 198 1.4E-17 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS23825 ec3d83c13b01bdbcf0278c2ff7388069 235 Pfam PF03483 B3/4 domain 67 200 9.9E-26 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS23825 ec3d83c13b01bdbcf0278c2ff7388069 235 SMART SM00873 64 217 1.6E-21 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 Gene3D G3DSA:3.40.50.720 1 245 3.3E-96 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 8.1E-43 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 8.1E-43 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 8.1E-43 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.1E-43 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 8.1E-43 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 8.1E-43 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 6.0E-4 T 11-11-2016 Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 245 1.2E-92 T 11-11-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.8E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.8E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.8E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 SUPERFAMILY SSF51735 4 245 2.23E-91 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11710 60443dec37e705ab2c551a17b7aed010 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 244 1.7E-72 T 11-11-2016 Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 SUPERFAMILY SSF54631 214 358 6.1E-34 T 11-11-2016 Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 Pfam PF00571 CBS domain 294 340 2.0E-7 T 11-11-2016 IPR000644 CBS domain Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 Pfam PF00571 CBS domain 220 274 8.1E-7 T 11-11-2016 IPR000644 CBS domain Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 Pfam PF01595 Domain of unknown function DUF21 25 203 8.9E-49 T 11-11-2016 IPR002550 Domain of unknown function DUF21 Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 Gene3D G3DSA:3.30.465.10 335 431 1.5E-25 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 SMART SM01091 355 433 7.6E-25 T 11-11-2016 IPR005170 Transporter-associated domain Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 SUPERFAMILY SSF56176 353 432 4.36E-21 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 SMART SM00116 227 276 5.0E-5 T 11-11-2016 IPR000644 CBS domain Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 SMART SM00116 292 340 0.88 T 11-11-2016 IPR000644 CBS domain Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 Pfam PF03471 Transporter associated domain 356 432 1.1E-19 T 11-11-2016 IPR005170 Transporter-associated domain Gferi_RS02255 39c0cbb728e1ff2304474d4c4de24d84 436 Gene3D G3DSA:3.10.580.10 204 334 4.8E-22 T 11-11-2016 Gferi_RS05330 ebd19de6d01b0a52077b142fe6020b2c 416 SUPERFAMILY SSF102114 106 351 5.36E-36 T 11-11-2016 Gferi_RS05330 ebd19de6d01b0a52077b142fe6020b2c 416 Pfam PF12544 Lysine-2,3-aminomutase 313 415 2.2E-39 T 11-11-2016 IPR025895 Lysine-2,3-aminomutase, C-terminal domain Gferi_RS05330 ebd19de6d01b0a52077b142fe6020b2c 416 TIGRFAM TIGR03820 lys_2_3_AblA: lysine-2,3-aminomutase 14 413 7.5E-188 T 11-11-2016 IPR022459 Lysine-2,3-aminomutase KEGG: 00310+5.4.3.2 Gferi_RS05330 ebd19de6d01b0a52077b142fe6020b2c 416 PIRSF PIRSF004911 1 393 2.7E-168 T 11-11-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Gferi_RS05330 ebd19de6d01b0a52077b142fe6020b2c 416 Gene3D G3DSA:3.20.20.70 104 340 4.7E-24 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS05330 ebd19de6d01b0a52077b142fe6020b2c 416 TIGRFAM TIGR00238 TIGR00238: KamA family protein 6 334 1.2E-119 T 11-11-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Gferi_RS05330 ebd19de6d01b0a52077b142fe6020b2c 416 Pfam PF04055 Radical SAM superfamily 122 269 5.1E-11 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS20250 674c32e0a2d2bc15293eb794441f3ae7 368 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 10 72 6.8E-10 T 11-11-2016 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Gferi_RS02780 ef06e58b3a0ebdd2c006009472158ab5 148 SUPERFAMILY SSF55826 3 141 1.24E-25 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS02780 ef06e58b3a0ebdd2c006009472158ab5 148 Gene3D G3DSA:3.90.960.10 2 141 1.7E-31 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS02780 ef06e58b3a0ebdd2c006009472158ab5 148 Pfam PF04073 Aminoacyl-tRNA editing domain 21 140 2.1E-22 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS05320 8cdeba5032a45e8a953e23f515215798 148 Gene3D G3DSA:3.10.580.10 5 130 5.4E-28 T 11-11-2016 Gferi_RS05320 8cdeba5032a45e8a953e23f515215798 148 SUPERFAMILY SSF54631 2 129 2.44E-30 T 11-11-2016 Gferi_RS05320 8cdeba5032a45e8a953e23f515215798 148 SMART SM00116 83 129 31.0 T 11-11-2016 IPR000644 CBS domain Gferi_RS05320 8cdeba5032a45e8a953e23f515215798 148 SMART SM00116 12 60 1.1E-4 T 11-11-2016 IPR000644 CBS domain Gferi_RS05320 8cdeba5032a45e8a953e23f515215798 148 Pfam PF00571 CBS domain 10 60 1.4E-10 T 11-11-2016 IPR000644 CBS domain Gferi_RS05320 8cdeba5032a45e8a953e23f515215798 148 Pfam PF00571 CBS domain 73 127 1.1E-5 T 11-11-2016 IPR000644 CBS domain Gferi_RS11575 ccd1278250f88eac6771d43b0dbc160d 391 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 224 388 7.4E-29 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS11575 ccd1278250f88eac6771d43b0dbc160d 391 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 7 390 1.7E-86 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS11215 aab6bc9c453e9eb8b1610e724cab914e 457 Gene3D G3DSA:1.10.1140.10 363 427 1.3E-4 T 11-11-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11215 aab6bc9c453e9eb8b1610e724cab914e 457 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 2 456 55.649 T 11-11-2016 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11215 aab6bc9c453e9eb8b1610e724cab914e 457 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 131 350 6.9E-67 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11215 aab6bc9c453e9eb8b1610e724cab914e 457 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 11 74 5.0E-8 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11215 aab6bc9c453e9eb8b1610e724cab914e 457 SUPERFAMILY SSF47917 361 421 3.06E-5 T 11-11-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11215 aab6bc9c453e9eb8b1610e724cab914e 457 Gene3D G3DSA:3.40.50.300 76 355 2.3E-98 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11215 aab6bc9c453e9eb8b1610e724cab914e 457 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 341 350 - T 11-11-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 Gferi_RS11215 aab6bc9c453e9eb8b1610e724cab914e 457 SUPERFAMILY SSF52540 78 355 1.59E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22565 e6952b283c7159cafe591170da13f980 342 SMART SM00387 223 334 3.1E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22565 e6952b283c7159cafe591170da13f980 342 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 225 329 7.7E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22565 e6952b283c7159cafe591170da13f980 342 Gene3D G3DSA:3.30.565.10 184 330 5.8E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22565 e6952b283c7159cafe591170da13f980 342 SUPERFAMILY SSF55874 189 330 6.28E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19680 792b38dd2e90d966d520c6b59457a32d 283 Pfam PF13673 Acetyltransferase (GNAT) domain 194 275 3.4E-8 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS19680 792b38dd2e90d966d520c6b59457a32d 283 Gene3D G3DSA:3.40.630.30 161 277 1.0E-10 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19680 792b38dd2e90d966d520c6b59457a32d 283 Gene3D G3DSA:3.40.630.30 1 146 1.3E-22 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19680 792b38dd2e90d966d520c6b59457a32d 283 SUPERFAMILY SSF55729 161 274 4.99E-11 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19680 792b38dd2e90d966d520c6b59457a32d 283 SUPERFAMILY SSF55729 1 145 9.14E-21 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS19680 792b38dd2e90d966d520c6b59457a32d 283 Pfam PF13508 Acetyltransferase (GNAT) domain 53 135 5.5E-8 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 SMART SM00448 6 119 2.2E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 Gene3D G3DSA:1.10.10.10 156 215 1.1E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 SMART SM00421 153 210 1.6E-26 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 Gene3D G3DSA:3.40.50.2300 4 155 6.6E-41 T 11-11-2016 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 3.0E-23 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 Pfam PF00072 Response regulator receiver domain 8 120 2.9E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 SUPERFAMILY SSF46894 151 215 4.08E-24 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 SUPERFAMILY SSF52172 5 136 6.12E-35 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 2.9E-16 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 2.9E-16 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS25980 f2a5c35ba47e191a2a4f1ae5f717b98f 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 2.9E-16 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS22590 59c47a4df4488fa754a92c5260a6cff1 298 Pfam PF00701 Dihydrodipicolinate synthetase family 6 292 5.0E-54 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS22590 59c47a4df4488fa754a92c5260a6cff1 298 SMART SM01130 4 295 9.4E-69 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS22590 59c47a4df4488fa754a92c5260a6cff1 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 6.2E-10 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS22590 59c47a4df4488fa754a92c5260a6cff1 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 6.2E-10 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS22590 59c47a4df4488fa754a92c5260a6cff1 298 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 6.2E-10 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS22590 59c47a4df4488fa754a92c5260a6cff1 298 SUPERFAMILY SSF51569 3 294 6.7E-70 T 11-11-2016 Gferi_RS22590 59c47a4df4488fa754a92c5260a6cff1 298 Gene3D G3DSA:3.20.20.70 3 296 1.0E-75 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS22590 59c47a4df4488fa754a92c5260a6cff1 298 PIRSF PIRSF001365 1 297 1.0E-63 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 Pfam PF13343 Bacterial extracellular solute-binding protein 90 284 1.0E-33 T 11-11-2016 Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 PIRSF PIRSF002825 1 331 3.3E-78 T 11-11-2016 IPR026045 Ferric binding protein Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 SUPERFAMILY SSF53850 25 328 4.97E-74 T 11-11-2016 Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 Gene3D G3DSA:3.40.190.10 123 262 3.8E-40 T 11-11-2016 Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 46 67 1.1E-5 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 143 157 1.1E-5 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 240 259 1.1E-5 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 Gene3D G3DSA:3.40.190.10 2 120 6.1E-35 T 11-11-2016 Gferi_RS22715 56054cbb69af25ea99d8b392148855d0 337 Gene3D G3DSA:3.40.190.10 263 322 6.1E-35 T 11-11-2016 Gferi_RS11260 811ce2ea11527fce3e2131042b1ecdf2 362 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 278 9.0E-14 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS11260 811ce2ea11527fce3e2131042b1ecdf2 362 Gene3D G3DSA:2.40.50.100 178 214 2.9E-8 T 11-11-2016 Gferi_RS11260 811ce2ea11527fce3e2131042b1ecdf2 362 Gene3D G3DSA:2.40.50.100 63 92 2.9E-8 T 11-11-2016 Gferi_RS11260 811ce2ea11527fce3e2131042b1ecdf2 362 SUPERFAMILY SSF111369 50 272 4.18E-7 T 11-11-2016 Gferi_RS11260 811ce2ea11527fce3e2131042b1ecdf2 362 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 360 1.6E-42 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 Gferi_RS26360 9699ac804c1179474baa12be61963416 110 Pfam PF04327 Cysteine peptidase C108, N-terminal of ribosomal L27 1 104 7.8E-24 T 11-11-2016 IPR007422 Cysteine peptidase C108, N-terminal of ribosomal L27 Gferi_RS26360 9699ac804c1179474baa12be61963416 110 SUPERFAMILY SSF118010 1 108 1.96E-28 T 11-11-2016 Gferi_RS26360 9699ac804c1179474baa12be61963416 110 Gene3D G3DSA:3.30.70.1490 10 106 5.6E-14 T 11-11-2016 Gferi_RS20445 838194cb7e08de2971df6fa17b245d90 520 Pfam PF01966 HD domain 349 467 2.7E-20 T 11-11-2016 IPR006674 HD domain Gferi_RS20445 838194cb7e08de2971df6fa17b245d90 520 Gene3D G3DSA:1.10.3210.10 342 507 1.1E-25 T 11-11-2016 IPR006674 HD domain Gferi_RS20445 838194cb7e08de2971df6fa17b245d90 520 SUPERFAMILY SSF109604 322 506 1.96E-40 T 11-11-2016 Gferi_RS20445 838194cb7e08de2971df6fa17b245d90 520 SMART SM00304 271 323 4.5E-5 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS20445 838194cb7e08de2971df6fa17b245d90 520 Pfam PF05228 CHASE4 domain 53 194 2.2E-16 T 11-11-2016 IPR007892 CHASE4 Gferi_RS20445 838194cb7e08de2971df6fa17b245d90 520 SMART SM00471 343 476 6.4E-13 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS01760 2ececf9e126897feae277bd117a664ce 180 Pfam PF00156 Phosphoribosyl transferase domain 6 156 8.0E-23 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS01760 2ececf9e126897feae277bd117a664ce 180 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 4 177 38.307 T 11-11-2016 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Gferi_RS01760 2ececf9e126897feae277bd117a664ce 180 Gene3D G3DSA:3.40.50.2020 7 166 1.1E-53 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS01760 2ececf9e126897feae277bd117a664ce 180 SUPERFAMILY SSF53271 6 170 2.23E-46 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 Pfam PF00338 Ribosomal protein S10p/S20e 9 103 2.7E-36 T 11-11-2016 IPR027486 Ribosomal protein S10 domain Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 SMART SM01403 9 103 3.1E-60 T 11-11-2016 IPR027486 Ribosomal protein S10 domain Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 SUPERFAMILY SSF54999 7 104 1.16E-38 T 11-11-2016 IPR027486 Ribosomal protein S10 domain Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 Gene3D G3DSA:3.30.70.600 6 104 3.0E-45 T 11-11-2016 IPR027486 Ribosomal protein S10 domain Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 ProSitePatterns PS00361 Ribosomal protein S10 signature. 31 46 - T 11-11-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 5 104 28.303 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 6 103 1.3E-46 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 PRINTS PR00971 Ribosomal protein S10 family signature 63 77 2.6E-19 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 PRINTS PR00971 Ribosomal protein S10 family signature 7 20 2.6E-19 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17390 8cfc91d82f352131b81fb311e5670faf 104 PRINTS PR00971 Ribosomal protein S10 family signature 42 57 2.6E-19 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS22250 6a4be0ddec947e2b49056830b4833653 580 SMART SM00382 359 545 1.7E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22250 6a4be0ddec947e2b49056830b4833653 580 Pfam PF00664 ABC transporter transmembrane region 61 288 2.5E-19 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS22250 6a4be0ddec947e2b49056830b4833653 580 SUPERFAMILY SSF90123 10 324 2.09E-52 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS22250 6a4be0ddec947e2b49056830b4833653 580 ProSitePatterns PS00211 ABC transporters family signature. 471 485 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22250 6a4be0ddec947e2b49056830b4833653 580 SUPERFAMILY SSF52540 331 569 6.71E-91 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22250 6a4be0ddec947e2b49056830b4833653 580 Gene3D G3DSA:1.20.1560.10 10 324 9.1E-42 T 11-11-2016 Gferi_RS22250 6a4be0ddec947e2b49056830b4833653 580 Gene3D G3DSA:3.40.50.300 334 563 1.5E-83 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22250 6a4be0ddec947e2b49056830b4833653 580 Pfam PF00005 ABC transporter 350 499 1.5E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25845 3a555e22b446c176df995877643ce6f0 201 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 198 5.2E-74 T 11-11-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Gferi_RS25845 3a555e22b446c176df995877643ce6f0 201 Gene3D G3DSA:3.40.50.880 1 200 1.2E-75 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS25845 3a555e22b446c176df995877643ce6f0 201 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 199 36.253 T 11-11-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Gferi_RS25845 3a555e22b446c176df995877643ce6f0 201 Pfam PF00117 Glutamine amidotransferase class-I 4 196 3.6E-22 T 11-11-2016 IPR017926 Glutamine amidotransferase Gferi_RS25845 3a555e22b446c176df995877643ce6f0 201 SUPERFAMILY SSF52317 2 199 3.2E-55 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS25845 3a555e22b446c176df995877643ce6f0 201 PIRSF PIRSF000495 1 201 1.1E-72 T 11-11-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 59 88 5.1E-33 T 11-11-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 231 258 5.1E-33 T 11-11-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 156 184 5.1E-33 T 11-11-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 24 5.1E-33 T 11-11-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 SMART SM01350 167 298 5.3E-7 T 11-11-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 150 1.3E-41 T 11-11-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 Gene3D G3DSA:3.40.50.720 2 168 1.6E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 167 276 1.2E-26 T 11-11-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 SUPERFAMILY SSF51735 2 150 2.39E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 Gene3D G3DSA:1.10.1040.10 169 276 2.6E-36 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 235 247 - T 11-11-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 SUPERFAMILY SSF48179 165 297 1.3E-42 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS15340 22ae1f188e785770383da3d507057e5a 298 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 297 3.9E-115 T 11-11-2016 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 Gferi_RS13555 9461a8a8c10085e642c129697182d3b3 89 Gene3D G3DSA:1.10.10.10 2 87 4.5E-32 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13555 9461a8a8c10085e642c129697182d3b3 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 37 52 1.4E-15 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS13555 9461a8a8c10085e642c129697182d3b3 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 5 20 1.4E-15 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS13555 9461a8a8c10085e642c129697182d3b3 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 1.4E-15 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS13555 9461a8a8c10085e642c129697182d3b3 89 SUPERFAMILY SSF46785 3 83 2.86E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13555 9461a8a8c10085e642c129697182d3b3 89 SMART SM00418 3 81 9.1E-31 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS13555 9461a8a8c10085e642c129697182d3b3 89 Pfam PF12840 Helix-turn-helix domain 3 61 4.2E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 ProSitePatterns PS00746 NifH/frxC family signature 1. 84 96 - T 11-11-2016 IPR030655 NifH/chlL conserved site Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 PRINTS PR00091 Nitrogenase component II signature 121 136 7.9E-38 T 11-11-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 PRINTS PR00091 Nitrogenase component II signature 29 44 7.9E-38 T 11-11-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 PRINTS PR00091 Nitrogenase component II signature 82 96 7.9E-38 T 11-11-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 PRINTS PR00091 Nitrogenase component II signature 7 20 7.9E-38 T 11-11-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 Hamap MF_00533 Nitrogenase iron protein [nifH]. 1 272 53.678 T 11-11-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 Gene3D G3DSA:3.40.50.300 3 267 6.4E-77 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 PIRSF PIRSF000363 1 272 6.3E-123 T 11-11-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 ProSitePatterns PS00692 NifH/frxC family signature 2. 122 135 - T 11-11-2016 IPR030655 NifH/chlL conserved site Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 SUPERFAMILY SSF52540 1 269 2.11E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 2 270 5.4E-139 T 11-11-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Gferi_RS18720 6edf4ff3d88b10065e976a74696c56c7 272 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 2 270 3.4E-132 T 11-11-2016 Gferi_RS11060 77c6f8e2ddfb849136b7a0484cfc6415 73 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 13 64 2.4E-15 T 11-11-2016 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter Gferi_RS22490 6ba3c247b0f656c911b0f54b88da9677 190 Gene3D G3DSA:2.60.120.10 102 182 1.6E-24 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS22490 6ba3c247b0f656c911b0f54b88da9677 190 SUPERFAMILY SSF47413 3 69 9.01E-15 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS22490 6ba3c247b0f656c911b0f54b88da9677 190 SMART SM00530 8 63 6.0E-11 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS22490 6ba3c247b0f656c911b0f54b88da9677 190 Pfam PF07883 Cupin domain 117 178 1.3E-15 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS22490 6ba3c247b0f656c911b0f54b88da9677 190 Pfam PF01381 Helix-turn-helix 9 63 5.8E-10 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS22490 6ba3c247b0f656c911b0f54b88da9677 190 SUPERFAMILY SSF51182 69 180 2.05E-28 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS22490 6ba3c247b0f656c911b0f54b88da9677 190 Gene3D G3DSA:1.10.260.40 4 101 1.7E-21 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS03360 700d864a37dd4db90a94c07b1bdcd8e7 391 Gene3D G3DSA:3.90.230.10 159 389 6.9E-45 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS03360 700d864a37dd4db90a94c07b1bdcd8e7 391 Pfam PF00557 Metallopeptidase family M24 166 375 7.5E-34 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS03360 700d864a37dd4db90a94c07b1bdcd8e7 391 Pfam PF01321 Creatinase/Prolidase N-terminal domain 12 156 1.1E-19 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS03360 700d864a37dd4db90a94c07b1bdcd8e7 391 SUPERFAMILY SSF53092 1 156 1.66E-35 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal Gferi_RS03360 700d864a37dd4db90a94c07b1bdcd8e7 391 SUPERFAMILY SSF55920 159 390 2.49E-55 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS03360 700d864a37dd4db90a94c07b1bdcd8e7 391 Gene3D G3DSA:3.40.350.10 1 156 1.8E-36 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS19345 c0036f0e5dd3d439eddfb8f1d4251331 386 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 130 382 3.5E-16 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS19345 c0036f0e5dd3d439eddfb8f1d4251331 386 SUPERFAMILY SSF51726 112 385 1.31E-36 T 11-11-2016 Gferi_RS19345 c0036f0e5dd3d439eddfb8f1d4251331 386 SUPERFAMILY SSF51726 11 73 1.31E-36 T 11-11-2016 Gferi_RS19345 c0036f0e5dd3d439eddfb8f1d4251331 386 Gene3D G3DSA:3.20.20.210 5 115 6.5E-30 T 11-11-2016 Gferi_RS19345 c0036f0e5dd3d439eddfb8f1d4251331 386 Gene3D G3DSA:3.20.20.210 149 384 6.5E-30 T 11-11-2016 Gferi_RS23410 33487b27f5c92260ce727232ca5f99b3 378 SUPERFAMILY SSF55383 51 134 6.28E-19 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS23410 33487b27f5c92260ce727232ca5f99b3 378 Gene3D G3DSA:3.30.457.10 54 117 2.0E-16 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS23410 33487b27f5c92260ce727232ca5f99b3 378 Gene3D G3DSA:3.30.457.10 118 148 1.4E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS23410 33487b27f5c92260ce727232ca5f99b3 378 Pfam PF07833 Copper amine oxidase N-terminal domain 48 140 1.4E-22 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS06920 836b525b609f2308c31ca0c95d93e7fb 341 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 320 1.4E-98 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06920 836b525b609f2308c31ca0c95d93e7fb 341 SUPERFAMILY SSF51735 1 334 2.73E-94 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06920 836b525b609f2308c31ca0c95d93e7fb 341 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 335 4.2E-146 T 11-11-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 Gferi_RS06920 836b525b609f2308c31ca0c95d93e7fb 341 Gene3D G3DSA:3.40.50.720 1 191 3.3E-69 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06920 836b525b609f2308c31ca0c95d93e7fb 341 Gene3D G3DSA:3.90.25.10 192 334 1.9E-53 T 11-11-2016 Gferi_RS10705 74b2eea1cc82c6dff62be1fb5f17c5aa 168 Pfam PF05130 FlgN protein 9 151 1.6E-7 T 11-11-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Gferi_RS10705 74b2eea1cc82c6dff62be1fb5f17c5aa 168 SUPERFAMILY SSF140566 14 128 5.1E-5 T 11-11-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 Gferi_RS06670 9a26c067271a3ec418042be255bb8312 112 Pfam PF03551 Transcriptional regulator PadR-like family 16 89 4.6E-25 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS06670 9a26c067271a3ec418042be255bb8312 112 SUPERFAMILY SSF46785 3 100 8.13E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06670 9a26c067271a3ec418042be255bb8312 112 Gene3D G3DSA:1.10.10.10 2 107 2.2E-32 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07470 c772327046ff771a7cbadb726bdde16f 134 SUPERFAMILY SSF53163 1 131 1.83E-20 T 11-11-2016 IPR023430 Peptidase HybD-like domain Gferi_RS07470 c772327046ff771a7cbadb726bdde16f 134 Gene3D G3DSA:3.40.50.1450 1 131 3.9E-18 T 11-11-2016 IPR023430 Peptidase HybD-like domain Gferi_RS07470 c772327046ff771a7cbadb726bdde16f 134 Pfam PF01750 Hydrogenase maturation protease 8 127 5.9E-9 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS07470 c772327046ff771a7cbadb726bdde16f 134 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 1 129 3.0E-20 T 11-11-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Gferi_RS11300 fba064598cc5586f9dcbf27d30c3517c 366 Pfam PF13276 HTH-like domain 144 189 4.8E-9 T 11-11-2016 IPR025948 HTH-like domain Gferi_RS11300 fba064598cc5586f9dcbf27d30c3517c 366 Pfam PF01527 Transposase 1 72 1.1E-10 T 11-11-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 Gferi_RS11300 fba064598cc5586f9dcbf27d30c3517c 366 SUPERFAMILY SSF53098 210 361 3.29E-34 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS11300 fba064598cc5586f9dcbf27d30c3517c 366 Gene3D G3DSA:3.30.420.10 212 362 1.0E-32 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS11300 fba064598cc5586f9dcbf27d30c3517c 366 Pfam PF00665 Integrase core domain 217 328 8.7E-24 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 Gferi_RS11300 fba064598cc5586f9dcbf27d30c3517c 366 SUPERFAMILY SSF48295 1 57 3.66E-14 T 11-11-2016 IPR010921 Trp repressor/replication initiator GO:0043565 Gferi_RS11300 fba064598cc5586f9dcbf27d30c3517c 366 Gene3D G3DSA:1.10.10.10 2 59 3.7E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08275 151b28a8898ea63c94d5102aff01a201 196 Pfam PF04229 GrpB protein 18 180 4.5E-36 T 11-11-2016 IPR007344 GrpB/Dephospho-CoA kinase Gferi_RS08275 151b28a8898ea63c94d5102aff01a201 196 Gene3D G3DSA:3.30.460.10 14 186 8.8E-43 T 11-11-2016 Gferi_RS08275 151b28a8898ea63c94d5102aff01a201 196 SUPERFAMILY SSF81301 21 185 1.01E-38 T 11-11-2016 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Pfam PF01206 Sulfurtransferase TusA 693 761 5.1E-15 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 304 368 3.9E-8 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 42 108 2.8E-19 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 379 448 0.37 T 11-11-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 118 268 1.5E-28 T 11-11-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 SUPERFAMILY SSF55124 249 388 3.11E-8 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 SUPERFAMILY SSF64307 690 763 3.14E-13 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 423 439 - T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Gene3D G3DSA:1.20.120.330 580 632 6.8E-6 T 11-11-2016 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Gene3D G3DSA:3.30.110.40 680 763 5.4E-15 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Gene3D G3DSA:3.30.413.10 118 270 4.2E-31 T 11-11-2016 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Gene3D G3DSA:3.30.413.10 376 515 1.0E-19 T 11-11-2016 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 SUPERFAMILY SSF55124 14 117 3.6E-27 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 SUPERFAMILY SSF56014 118 274 3.4E-38 T 11-11-2016 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 PRINTS PR00397 Sirohaem Fe-binding site signature 423 441 2.3E-5 T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 PRINTS PR00397 Sirohaem Fe-binding site signature 377 395 2.3E-5 T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Gene3D G3DSA:3.90.480.10 296 367 1.6E-27 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 Gene3D G3DSA:3.90.480.10 46 115 1.6E-27 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 Gferi_RS06125 886d3a001d80975ddf89a01249349639 764 SUPERFAMILY SSF56014 376 532 4.19E-22 T 11-11-2016 Gferi_RS04480 65885121ceef5a4f41979d947c2bc857 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 116 1.3E-16 T 11-11-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 Gferi_RS04480 65885121ceef5a4f41979d947c2bc857 342 Gene3D G3DSA:3.40.50.720 1 134 6.0E-32 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04480 65885121ceef5a4f41979d947c2bc857 342 SUPERFAMILY SSF51735 2 158 2.37E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04480 65885121ceef5a4f41979d947c2bc857 342 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 229 3.8E-8 T 11-11-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 Gferi_RS04480 65885121ceef5a4f41979d947c2bc857 342 SUPERFAMILY SSF55347 131 292 5.23E-26 T 11-11-2016 Gferi_RS04480 65885121ceef5a4f41979d947c2bc857 342 Gene3D G3DSA:3.30.360.10 135 340 2.5E-33 T 11-11-2016 Gferi_RS02840 c5bcc33ef75f1f1b1a5fd56817cda7db 231 Pfam PF03932 CutC family 2 197 1.2E-53 T 11-11-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 Gferi_RS02840 c5bcc33ef75f1f1b1a5fd56817cda7db 231 Gene3D G3DSA:3.20.20.380 1 207 1.0E-71 T 11-11-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 Gferi_RS02840 c5bcc33ef75f1f1b1a5fd56817cda7db 231 SUPERFAMILY SSF110395 2 209 4.45E-56 T 11-11-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 Gferi_RS09175 46bd46e948f3a6047347335e75c3d2ea 396 Pfam PF12704 MacB-like periplasmic core domain 22 238 2.7E-30 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS09175 46bd46e948f3a6047347335e75c3d2ea 396 Pfam PF02687 FtsX-like permease family 278 388 3.1E-22 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS02935 91a46da8ff56330bb49799ccc93d894c 216 Gene3D G3DSA:1.20.120.530 76 211 6.4E-23 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS02935 91a46da8ff56330bb49799ccc93d894c 216 SUPERFAMILY SSF46785 5 77 4.49E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02935 91a46da8ff56330bb49799ccc93d894c 216 Pfam PF07729 FCD domain 84 204 7.7E-19 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS02935 91a46da8ff56330bb49799ccc93d894c 216 SMART SM00895 83 205 1.9E-7 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS02935 91a46da8ff56330bb49799ccc93d894c 216 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 73 2.1E-14 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS02935 91a46da8ff56330bb49799ccc93d894c 216 SMART SM00345 15 73 2.1E-11 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS02935 91a46da8ff56330bb49799ccc93d894c 216 SUPERFAMILY SSF48008 80 209 4.97E-19 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS02935 91a46da8ff56330bb49799ccc93d894c 216 Gene3D G3DSA:1.10.10.10 3 73 6.9E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16575 fbdf13892a597faba10d9f7da25ef621 484 Pfam PF15975 Flotillin 349 430 3.4E-11 T 11-11-2016 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 Gferi_RS16575 fbdf13892a597faba10d9f7da25ef621 484 SUPERFAMILY SSF117892 56 202 1.44E-31 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS16575 fbdf13892a597faba10d9f7da25ef621 484 SMART SM00244 27 195 7.2E-4 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS16575 fbdf13892a597faba10d9f7da25ef621 484 Pfam PF01145 SPFH domain / Band 7 family 31 211 3.0E-28 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS09355 8db4f9970d4d5f734685f970a15d66eb 145 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 9 120 6.8E-17 T 11-11-2016 IPR000014 PAS domain Gferi_RS09355 8db4f9970d4d5f734685f970a15d66eb 145 Gene3D G3DSA:3.30.450.20 9 116 2.1E-17 T 11-11-2016 Gferi_RS09355 8db4f9970d4d5f734685f970a15d66eb 145 SMART SM00091 5 72 3.2E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS09355 8db4f9970d4d5f734685f970a15d66eb 145 SUPERFAMILY SSF55785 10 118 8.72E-18 T 11-11-2016 IPR000014 PAS domain Gferi_RS09355 8db4f9970d4d5f734685f970a15d66eb 145 Pfam PF00989 PAS fold 9 115 2.6E-11 T 11-11-2016 IPR013767 PAS fold GO:0006355 Gferi_RS12640 7a6cc956b043446b3ce75d8e9da7ed1c 312 Gene3D G3DSA:3.40.190.10 80 216 1.3E-52 T 11-11-2016 Gferi_RS12640 7a6cc956b043446b3ce75d8e9da7ed1c 312 SUPERFAMILY SSF53850 77 312 2.17E-73 T 11-11-2016 Gferi_RS12640 7a6cc956b043446b3ce75d8e9da7ed1c 312 Pfam PF14502 Helix-turn-helix domain 28 74 2.1E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12640 7a6cc956b043446b3ce75d8e9da7ed1c 312 Pfam PF14503 YhfZ C-terminal domain 78 312 6.9E-85 T 11-11-2016 IPR032791 Uncharacterised protein YhfZ, C-terminal domain Gferi_RS12640 7a6cc956b043446b3ce75d8e9da7ed1c 312 Gene3D G3DSA:1.10.10.10 26 79 1.2E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 Gene3D G3DSA:1.10.3850.10 793 1004 4.1E-61 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 SUPERFAMILY SSF82714 704 787 9.55E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 4.0E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 4.0E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 4.0E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 PRINTS PR00702 Acriflavin resistance protein family signature 533 550 4.0E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 4.0E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 4.0E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 4.0E-30 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 Gene3D G3DSA:3.30.70.1320 142 178 1.5E-8 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 Gene3D G3DSA:3.30.70.1320 271 304 1.5E-8 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 Gene3D G3DSA:3.30.2090.10 704 787 8.4E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 Gene3D G3DSA:3.30.2090.10 182 265 1.8E-17 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 Pfam PF00873 AcrB/AcrD/AcrF family 8 1003 2.4E-191 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 SUPERFAMILY SSF82693 138 181 4.18E-11 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 SUPERFAMILY SSF82693 269 319 4.18E-11 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 SUPERFAMILY SSF82866 787 1004 2.75E-51 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 Gene3D G3DSA:3.30.70.1430 42 137 1.0E-24 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 Gene3D G3DSA:1.20.1640.10 305 497 2.3E-44 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 SUPERFAMILY SSF82714 183 266 2.62E-14 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 SUPERFAMILY SSF82693 42 132 6.8E-22 T 11-11-2016 Gferi_RS19970 e2b6364fdeb137d75912cb7f39d1d506 1016 SUPERFAMILY SSF82866 301 490 7.19E-38 T 11-11-2016 Gferi_RS11265 b33c48444f6f5cc31a7edaaf87e7a0a1 195 SUPERFAMILY SSF46689 6 79 3.59E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS11265 b33c48444f6f5cc31a7edaaf87e7a0a1 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.1E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS11265 b33c48444f6f5cc31a7edaaf87e7a0a1 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.1E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS11265 b33c48444f6f5cc31a7edaaf87e7a0a1 195 Gene3D G3DSA:1.10.357.10 8 194 1.3E-23 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS11265 b33c48444f6f5cc31a7edaaf87e7a0a1 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 58 2.1E-14 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS09045 08dbd3fca0c31addefe4bd98e16cf52d 105 SMART SM00900 24 98 1.1E-11 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS09045 08dbd3fca0c31addefe4bd98e16cf52d 105 Pfam PF04205 FMN-binding domain 24 96 5.0E-14 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS17290 89601551bd758ae531253903adf9e321 171 Pfam PF05991 YacP-like NYN domain 5 169 7.6E-57 T 11-11-2016 IPR010298 Protein of unknown function DUF901 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 64 609 3.2E-171 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 SUPERFAMILY SSF56784 312 332 2.75E-58 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 SUPERFAMILY SSF56784 369 607 2.75E-58 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 316 322 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 SUPERFAMILY SSF81665 214 308 2.09E-15 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 SUPERFAMILY SSF81665 64 117 2.09E-15 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 SUPERFAMILY SSF81665 557 606 2.09E-15 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 SUPERFAMILY SSF81653 116 213 1.05E-24 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 Pfam PF00122 E1-E2 ATPase 85 305 2.3E-61 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 Gene3D G3DSA:3.40.1110.10 305 341 2.8E-5 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 86 588 5.6E-73 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 64 611 4.0E-155 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 Gene3D G3DSA:2.70.150.10 64 214 3.8E-28 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 Gene3D G3DSA:3.40.1110.10 342 428 2.1E-12 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 Pfam PF00702 haloacid dehalogenase-like hydrolase 312 521 2.3E-32 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 Gene3D G3DSA:3.40.50.1000 429 577 3.7E-42 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 PRINTS PR00941 Cadmium-transporting ATPase signature 179 195 2.5E-5 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 PRINTS PR00941 Cadmium-transporting ATPase signature 98 118 2.5E-5 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 PRINTS PR00941 Cadmium-transporting ATPase signature 198 212 2.5E-5 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 531 543 1.1E-22 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 163 177 1.1E-22 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 507 526 1.1E-22 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 451 461 1.1E-22 T 11-11-2016 Gferi_RS07605 ca85e2e402c10a891ea507ce5104eab5 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 314 328 1.1E-22 T 11-11-2016 Gferi_RS24320 f45eb65ab61fd4d33a1ee142359846de 305 Gene3D G3DSA:1.10.8.300 188 296 3.7E-33 T 11-11-2016 Gferi_RS24320 f45eb65ab61fd4d33a1ee142359846de 305 PIRSF PIRSF002849 1 301 4.0E-131 T 11-11-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted Gferi_RS24320 f45eb65ab61fd4d33a1ee142359846de 305 Gene3D G3DSA:3.40.50.300 9 173 4.6E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24320 f45eb65ab61fd4d33a1ee142359846de 305 SUPERFAMILY SSF52540 7 271 4.71E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24320 f45eb65ab61fd4d33a1ee142359846de 305 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 27 157 6.7E-64 T 11-11-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Gferi_RS24320 f45eb65ab61fd4d33a1ee142359846de 305 SMART SM00382 24 165 2.3E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS01240 cd4728ecd7b20941ecbbe0330332a1a4 672 SUPERFAMILY SSF52540 264 464 6.94E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01240 cd4728ecd7b20941ecbbe0330332a1a4 672 Pfam PF01580 FtsK/SpoIIIE family 246 385 3.0E-31 T 11-11-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Gferi_RS01240 cd4728ecd7b20941ecbbe0330332a1a4 672 Gene3D G3DSA:3.40.50.300 232 468 1.1E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02615 636b037f0f96706953be91c87cac71db 342 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 149 2.0E-8 T 11-11-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Gferi_RS02615 636b037f0f96706953be91c87cac71db 342 PIRSF PIRSF036497 1 342 1.3E-80 T 11-11-2016 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Gferi_RS02615 636b037f0f96706953be91c87cac71db 342 SUPERFAMILY SSF55347 160 321 3.4E-41 T 11-11-2016 Gferi_RS02615 636b037f0f96706953be91c87cac71db 342 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 206 228 - T 11-11-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Gferi_RS02615 636b037f0f96706953be91c87cac71db 342 Gene3D G3DSA:3.30.360.10 172 321 2.3E-45 T 11-11-2016 Gferi_RS02615 636b037f0f96706953be91c87cac71db 342 SUPERFAMILY SSF51735 1 181 2.86E-20 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02615 636b037f0f96706953be91c87cac71db 342 Gene3D G3DSA:3.40.50.720 1 171 2.2E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02615 636b037f0f96706953be91c87cac71db 342 Pfam PF00742 Homoserine dehydrogenase 160 338 1.3E-48 T 11-11-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Gferi_RS07720 a45050d0fcb40edf8554f092fa5192c9 228 SUPERFAMILY SSF52172 2 124 1.38E-41 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS07720 a45050d0fcb40edf8554f092fa5192c9 228 Pfam PF00072 Response regulator receiver domain 3 112 4.7E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07720 a45050d0fcb40edf8554f092fa5192c9 228 SMART SM00862 149 225 4.7E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07720 a45050d0fcb40edf8554f092fa5192c9 228 SUPERFAMILY SSF46894 125 225 1.16E-26 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS07720 a45050d0fcb40edf8554f092fa5192c9 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 7.9E-23 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07720 a45050d0fcb40edf8554f092fa5192c9 228 Gene3D G3DSA:3.40.50.2300 2 122 5.7E-42 T 11-11-2016 Gferi_RS07720 a45050d0fcb40edf8554f092fa5192c9 228 SMART SM00448 1 111 3.4E-44 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07720 a45050d0fcb40edf8554f092fa5192c9 228 Gene3D G3DSA:1.10.10.10 125 226 1.8E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 40 472 2.1E-156 T 11-11-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 Gene3D G3DSA:3.80.30.20 184 412 1.0E-86 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 Pfam PF04055 Radical SAM superfamily 188 360 1.0E-34 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 39 476 74.984 T 11-11-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 Pfam PF01938 TRAM domain 419 474 4.1E-12 T 11-11-2016 IPR002792 TRAM domain Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 188 208 - T 11-11-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 Pfam PF00919 Uncharacterized protein family UPF0004 40 141 1.3E-29 T 11-11-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 SMART SM00729 184 402 2.5E-64 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 SUPERFAMILY SSF102114 182 407 1.16E-63 T 11-11-2016 Gferi_RS27235 f3446dc8a642ab22de1b5b47b4ea9ac9 479 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 42 472 9.7E-175 T 11-11-2016 Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 SMART SM00859 5 121 1.4E-38 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 SUPERFAMILY SSF55347 129 315 1.31E-70 T 11-11-2016 Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 PIRSF PIRSF000148 3 331 1.2E-122 T 11-11-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 1.5E-30 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 3 328 36.258 T 11-11-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 314 4.9E-47 T 11-11-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 5 329 7.4E-135 T 11-11-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 SUPERFAMILY SSF51735 3 156 5.02E-48 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 Gene3D G3DSA:3.40.50.720 2 141 4.5E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04230 be5e77f658fb09284b38a36712d5af70 332 Gene3D G3DSA:3.30.360.10 142 311 4.3E-71 T 11-11-2016 Gferi_RS03765 067864a301357b6bc694617c90080bfa 236 SMART SM00858 37 99 1.8E-8 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS03765 067864a301357b6bc694617c90080bfa 236 SUPERFAMILY SSF51269 41 99 3.66E-6 T 11-11-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal Reactome: R-HSA-4085001 Gferi_RS03765 067864a301357b6bc694617c90080bfa 236 Pfam PF08666 SAF domain 38 93 1.6E-10 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS03765 067864a301357b6bc694617c90080bfa 236 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 106 226 1.3E-15 T 11-11-2016 IPR031571 Flp pilus assembly protein RcpC/CpaB domain Gferi_RS03765 067864a301357b6bc694617c90080bfa 236 Gene3D G3DSA:3.90.1210.10 42 103 9.4E-4 T 11-11-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal Reactome: R-HSA-4085001 Gferi_RS03765 067864a301357b6bc694617c90080bfa 236 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 33 226 5.4E-24 T 11-11-2016 IPR017592 Pilus assembly, Flp-type CpaB Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 SUPERFAMILY SSF53187 3 179 4.89E-55 T 11-11-2016 Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 SUPERFAMILY SSF53187 278 369 4.89E-55 T 11-11-2016 Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 SUPERFAMILY SSF55031 167 269 3.4E-22 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 Pfam PF07687 Peptidase dimerisation domain 166 258 1.6E-7 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 Gene3D G3DSA:3.40.630.10 275 383 2.1E-56 T 11-11-2016 Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 Gene3D G3DSA:3.40.630.10 1 166 2.1E-56 T 11-11-2016 Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 17 341 3.3E-61 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 PIRSF PIRSF037226 1 390 4.8E-115 T 11-11-2016 IPR017144 Peptidase M20A, amidohydrolase, predicted Gferi_RS08445 bb3fc7e258bde49d96ec0fed0605d290 391 Gene3D G3DSA:3.30.70.360 167 269 3.4E-24 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS18185 61c74afb34da8b77d75c9408eea2e586 320 Pfam PF03547 Membrane transport protein 166 310 2.0E-9 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Gferi_RS18185 61c74afb34da8b77d75c9408eea2e586 320 Pfam PF03547 Membrane transport protein 9 148 5.2E-9 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Gferi_RS13765 4f2824fa8ff277f84b483888bf0a470a 229 Gene3D G3DSA:1.10.10.10 128 227 6.4E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13765 4f2824fa8ff277f84b483888bf0a470a 229 SMART SM00862 150 226 8.0E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS13765 4f2824fa8ff277f84b483888bf0a470a 229 Gene3D G3DSA:3.40.50.2300 2 120 6.4E-43 T 11-11-2016 Gferi_RS13765 4f2824fa8ff277f84b483888bf0a470a 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 226 2.6E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS13765 4f2824fa8ff277f84b483888bf0a470a 229 SUPERFAMILY SSF52172 2 123 1.99E-43 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS13765 4f2824fa8ff277f84b483888bf0a470a 229 SMART SM00448 3 113 2.5E-49 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS13765 4f2824fa8ff277f84b483888bf0a470a 229 Pfam PF00072 Response regulator receiver domain 5 114 3.4E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS13765 4f2824fa8ff277f84b483888bf0a470a 229 SUPERFAMILY SSF46894 126 226 8.79E-30 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS18205 b087e3e45e044b094a85027f596011a4 308 Gene3D G3DSA:3.40.50.720 99 273 6.6E-66 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18205 b087e3e45e044b094a85027f596011a4 308 Gene3D G3DSA:3.40.50.720 3 98 3.7E-34 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18205 b087e3e45e044b094a85027f596011a4 308 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 18 302 3.7E-30 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Gferi_RS18205 b087e3e45e044b094a85027f596011a4 308 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 94 270 2.8E-63 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Gferi_RS18205 b087e3e45e044b094a85027f596011a4 308 SUPERFAMILY SSF52283 2 119 2.08E-28 T 11-11-2016 Gferi_RS18205 b087e3e45e044b094a85027f596011a4 308 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 210 226 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS18205 b087e3e45e044b094a85027f596011a4 308 SUPERFAMILY SSF51735 85 270 9.56E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25115 7bb79b692cece37f727a2570895a67ce 298 Pfam PF00892 EamA-like transporter family 142 284 7.8E-19 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS25115 7bb79b692cece37f727a2570895a67ce 298 Pfam PF00892 EamA-like transporter family 9 130 8.5E-13 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS25115 7bb79b692cece37f727a2570895a67ce 298 SUPERFAMILY SSF103481 40 133 4.71E-11 T 11-11-2016 Gferi_RS25115 7bb79b692cece37f727a2570895a67ce 298 SUPERFAMILY SSF103481 190 289 5.62E-14 T 11-11-2016 Gferi_RS06845 0072da7e1df90146d6d02c2aa3abbb03 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 280 7.7E-14 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06845 0072da7e1df90146d6d02c2aa3abbb03 292 SUPERFAMILY SSF161098 20 291 1.05E-63 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06845 0072da7e1df90146d6d02c2aa3abbb03 292 Gene3D G3DSA:1.10.3720.10 17 278 3.3E-57 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS03795 9329b0089987abbf6d9f05292edff624 809 Pfam PF01551 Peptidase family M23 700 795 6.8E-28 T 11-11-2016 IPR016047 Peptidase M23 Gferi_RS03795 9329b0089987abbf6d9f05292edff624 809 SUPERFAMILY SSF51261 673 797 3.09E-48 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS03795 9329b0089987abbf6d9f05292edff624 809 Gene3D G3DSA:2.70.70.10 658 798 3.5E-43 T 11-11-2016 Gferi_RS07850 f90e5b599c463c1b4674d908bddfa090 332 SUPERFAMILY SSF81345 5 326 1.7E-74 T 11-11-2016 IPR029022 ABC transporter, BtuC-like Gferi_RS07850 f90e5b599c463c1b4674d908bddfa090 332 Pfam PF01032 FecCD transport family 17 326 4.2E-85 T 11-11-2016 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 Gferi_RS07850 f90e5b599c463c1b4674d908bddfa090 332 Gene3D G3DSA:1.10.3470.10 2 328 2.7E-94 T 11-11-2016 IPR029022 ABC transporter, BtuC-like Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 Pfam PF00672 HAMP domain 302 369 2.7E-15 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 Gene3D G3DSA:1.10.287.950 417 632 3.0E-51 T 11-11-2016 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 SMART SM00283 402 677 2.9E-64 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 469 667 1.6E-46 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 Pfam PF02743 Cache domain 64 283 9.6E-27 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 Gene3D G3DSA:3.30.450.20 159 293 1.5E-19 T 11-11-2016 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 SUPERFAMILY SSF58104 408 677 1.31E-69 T 11-11-2016 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 SUPERFAMILY SSF58104 341 375 1.31E-69 T 11-11-2016 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 SMART SM00304 321 373 4.5E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 SMART SM00304 394 440 47.0 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS10660 9a7eb4eb3fcb584175c6820d48938603 792 SUPERFAMILY SSF103190 83 199 2.17E-10 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS02515 05a453809035311f1d35a15da96fda5e 289 Pfam PF01569 PAP2 superfamily 128 235 2.3E-16 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS02515 05a453809035311f1d35a15da96fda5e 289 SUPERFAMILY SSF48317 82 233 2.22E-32 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS02515 05a453809035311f1d35a15da96fda5e 289 Gene3D G3DSA:1.10.606.10 10 245 4.5E-45 T 11-11-2016 IPR016119 Bromoperoxidase/chloroperoxidase, C-terminal GO:0004601|GO:0055114 Gferi_RS03295 4f696026b21cf27d051b553d6c727340 458 Gene3D G3DSA:1.20.1250.20 15 205 3.4E-6 T 11-11-2016 Gferi_RS03295 4f696026b21cf27d051b553d6c727340 458 Gene3D G3DSA:1.20.1250.20 238 437 1.6E-10 T 11-11-2016 Gferi_RS03295 4f696026b21cf27d051b553d6c727340 458 SUPERFAMILY SSF103473 9 437 6.41E-22 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS03295 4f696026b21cf27d051b553d6c727340 458 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 13 446 2.2E-79 T 11-11-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 Gferi_RS03295 4f696026b21cf27d051b553d6c727340 458 Pfam PF13347 MFS/sugar transport protein 13 439 2.7E-93 T 11-11-2016 Gferi_RS21200 0094adb35f918a0d5a450943935813a2 710 SMART SM00052 445 693 1.5E-74 T 11-11-2016 IPR001633 EAL domain Gferi_RS21200 0094adb35f918a0d5a450943935813a2 710 SUPERFAMILY SSF141868 464 701 4.05E-70 T 11-11-2016 IPR001633 EAL domain Gferi_RS21200 0094adb35f918a0d5a450943935813a2 710 Gene3D G3DSA:3.20.20.450 463 700 9.1E-76 T 11-11-2016 IPR001633 EAL domain Gferi_RS21200 0094adb35f918a0d5a450943935813a2 710 Pfam PF02378 Phosphotransferase system, EIIC 22 341 3.1E-32 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS21200 0094adb35f918a0d5a450943935813a2 710 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 8 410 2.5E-78 T 11-11-2016 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 Gferi_RS21200 0094adb35f918a0d5a450943935813a2 710 Pfam PF00563 EAL domain 463 687 1.5E-61 T 11-11-2016 IPR001633 EAL domain Gferi_RS13970 88a985e7ee782f158e4b22ff6c91e147 422 Pfam PF02371 Transposase IS116/IS110/IS902 family 276 356 2.3E-25 T 11-11-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Gferi_RS13970 88a985e7ee782f158e4b22ff6c91e147 422 Pfam PF01548 Transposase 8 166 6.9E-32 T 11-11-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Gferi_RS21880 88a985e7ee782f158e4b22ff6c91e147 422 Pfam PF02371 Transposase IS116/IS110/IS902 family 276 356 2.3E-25 T 11-11-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Gferi_RS21880 88a985e7ee782f158e4b22ff6c91e147 422 Pfam PF01548 Transposase 8 166 6.9E-32 T 11-11-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Gferi_RS07280 88a985e7ee782f158e4b22ff6c91e147 422 Pfam PF02371 Transposase IS116/IS110/IS902 family 276 356 2.3E-25 T 11-11-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Gferi_RS07280 88a985e7ee782f158e4b22ff6c91e147 422 Pfam PF01548 Transposase 8 166 6.9E-32 T 11-11-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Gferi_RS00415 3495973c0d06a3db523c4f78fbab36a8 247 Gene3D G3DSA:3.30.700.10 14 53 3.5E-8 T 11-11-2016 Gferi_RS00415 3495973c0d06a3db523c4f78fbab36a8 247 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 8 33 6.0E-7 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00415 3495973c0d06a3db523c4f78fbab36a8 247 SUPERFAMILY SSF54523 14 82 4.79E-12 T 11-11-2016 Gferi_RS00415 3495973c0d06a3db523c4f78fbab36a8 247 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 34 4.6E-7 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS22060 735542b3af50a8ac0f2f219dcafbeffd 154 SUPERFAMILY SSF54292 3 81 8.13E-22 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS22060 735542b3af50a8ac0f2f219dcafbeffd 154 Gene3D G3DSA:1.10.150.120 78 151 8.8E-27 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS22060 735542b3af50a8ac0f2f219dcafbeffd 154 Pfam PF01799 [2Fe-2S] binding domain 76 145 1.0E-25 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS22060 735542b3af50a8ac0f2f219dcafbeffd 154 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Gferi_RS22060 735542b3af50a8ac0f2f219dcafbeffd 154 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 58 1.5E-5 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS22060 735542b3af50a8ac0f2f219dcafbeffd 154 SUPERFAMILY SSF47741 76 149 7.07E-27 T 11-11-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 Gferi_RS22060 735542b3af50a8ac0f2f219dcafbeffd 154 Gene3D G3DSA:3.10.20.30 3 77 2.9E-28 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 SUPERFAMILY SSF63520 291 395 7.06E-21 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 SUPERFAMILY SSF52794 400 483 2.09E-9 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Gene3D G3DSA:1.10.1790.10 293 395 2.6E-21 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Gene3D G3DSA:1.10.1790.10 182 273 7.2E-6 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 500 633 3.7E-27 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Pfam PF00874 PRD domain 192 274 2.4E-5 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Pfam PF00874 PRD domain 303 392 1.0E-17 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Pfam PF05043 Mga helix-turn-helix domain 101 166 2.0E-9 T 11-11-2016 IPR007737 Mga helix-turn-helix domain Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Gene3D G3DSA:1.10.10.10 8 67 1.7E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 SUPERFAMILY SSF63520 172 274 4.19E-8 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 SUPERFAMILY SSF55804 497 633 8.76E-28 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Gene3D G3DSA:3.40.930.10 498 633 1.2E-30 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 403 481 8.1E-5 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Pfam PF08279 HTH domain 8 63 8.6E-10 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS12780 0b604d7c1f55bae424d8676e34e30b47 635 Gene3D G3DSA:3.40.50.270 402 488 1.3E-9 T 11-11-2016 Gferi_RS21670 10acf64636826d6c68c71de4f760e031 83 SUPERFAMILY SSF55073 2 73 2.04E-12 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS21670 10acf64636826d6c68c71de4f760e031 83 Gene3D G3DSA:3.30.70.270 39 75 1.9E-4 T 11-11-2016 Gferi_RS21670 10acf64636826d6c68c71de4f760e031 83 Gene3D G3DSA:3.30.70.270 2 38 7.9E-8 T 11-11-2016 Gferi_RS21670 10acf64636826d6c68c71de4f760e031 83 Pfam PF00990 Diguanylate cyclase, GGDEF domain 2 37 6.4E-8 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS01285 210b4f777b94f2d36d39bb2e12e02846 353 Pfam PF00395 S-layer homology domain 147 184 1.0E-8 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS01285 210b4f777b94f2d36d39bb2e12e02846 353 Pfam PF00395 S-layer homology domain 32 73 2.8E-14 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS19400 3db36cd888945d6575e2850a66a7fe12 84 Gene3D G3DSA:1.10.260.40 13 74 1.1E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19400 3db36cd888945d6575e2850a66a7fe12 84 Pfam PF12844 Helix-turn-helix domain 14 63 3.3E-10 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS19400 3db36cd888945d6575e2850a66a7fe12 84 SUPERFAMILY SSF47413 14 75 8.58E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19400 3db36cd888945d6575e2850a66a7fe12 84 SMART SM00530 15 70 3.3E-12 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS23690 5c01e0fe7d371af0f434cd8e63357460 183 Gene3D G3DSA:2.40.50.140 35 169 4.6E-7 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS23690 5c01e0fe7d371af0f434cd8e63357460 183 Pfam PF10991 Protein of unknown function (DUF2815) 9 177 3.0E-69 T 11-11-2016 IPR022595 Protein of unknown function DUF2815 Gferi_RS23690 5c01e0fe7d371af0f434cd8e63357460 183 SUPERFAMILY SSF50249 6 179 3.26E-52 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17195 d3565a7b4344a603c9386764662eae7b 330 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 10 183 1.6E-67 T 11-11-2016 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 Gferi_RS17195 d3565a7b4344a603c9386764662eae7b 330 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 238 330 2.8E-46 T 11-11-2016 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 Gene3D G3DSA:1.10.10.60 304 360 7.8E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 Pfam PF10114 Sensory domain found in PocR 2 160 7.2E-28 T 11-11-2016 IPR018771 PocR domain Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 SMART SM00342 324 407 2.3E-33 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 376 391 8.9E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 391 407 8.9E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 Gene3D G3DSA:1.10.10.60 361 410 7.2E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 SUPERFAMILY SSF46689 309 358 8.06E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 Pfam PF12833 Helix-turn-helix domain 334 408 2.1E-20 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 361 403 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS17610 c6577e318d507106e0b1abbefa7311a8 412 SUPERFAMILY SSF46689 360 410 2.82E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07775 19e3845c47ce8e39984fe07aed3687a1 106 SUPERFAMILY SSF46785 11 93 7.61E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07775 19e3845c47ce8e39984fe07aed3687a1 106 Pfam PF03551 Transcriptional regulator PadR-like family 20 83 4.1E-16 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS07775 19e3845c47ce8e39984fe07aed3687a1 106 Gene3D G3DSA:1.10.10.10 14 94 1.6E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01080 a9f3158a9334b52f1cb11169a0b99dd0 477 Gene3D G3DSA:1.10.443.10 280 466 5.9E-14 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS01080 a9f3158a9334b52f1cb11169a0b99dd0 477 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 26 121 2.9E-9 T 11-11-2016 IPR029464 Type I restriction enzyme R protein, N-terminal domain Gferi_RS01080 a9f3158a9334b52f1cb11169a0b99dd0 477 SUPERFAMILY SSF56349 166 450 1.82E-21 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS01080 a9f3158a9334b52f1cb11169a0b99dd0 477 Pfam PF00589 Phage integrase family 285 440 3.1E-8 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS13105 6b27a5ddbcc18263ede98cb762b6d1a2 162 Pfam PF02915 Rubrerythrin 14 150 4.0E-14 T 11-11-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Gferi_RS13105 6b27a5ddbcc18263ede98cb762b6d1a2 162 Gene3D G3DSA:1.20.1260.10 10 154 2.1E-27 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS13105 6b27a5ddbcc18263ede98cb762b6d1a2 162 SUPERFAMILY SSF47240 13 159 2.9E-21 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS01795 5772f15494fedc3d73c33d880ba1e680 157 Pfam PF05103 DivIVA protein 2 132 9.7E-49 T 11-11-2016 IPR007793 DivIVA family Gferi_RS01795 5772f15494fedc3d73c33d880ba1e680 157 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 2 35 1.8E-17 T 11-11-2016 IPR019933 DivIVA domain Gferi_RS06780 469879f31fe356ab3160b3c8afb65969 214 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 189 7.5E-24 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS06780 469879f31fe356ab3160b3c8afb65969 214 Gene3D G3DSA:3.40.50.1000 95 208 1.1E-37 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS06780 469879f31fe356ab3160b3c8afb65969 214 Gene3D G3DSA:3.40.50.1000 1 16 1.1E-37 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS06780 469879f31fe356ab3160b3c8afb65969 214 Gene3D G3DSA:1.10.150.240 17 92 7.5E-24 T 11-11-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 Gferi_RS06780 469879f31fe356ab3160b3c8afb65969 214 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 2 189 1.6E-60 T 11-11-2016 IPR010976 Beta-phosphoglucomutase hydrolase Gferi_RS06780 469879f31fe356ab3160b3c8afb65969 214 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 75 189 2.0E-18 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS06780 469879f31fe356ab3160b3c8afb65969 214 SUPERFAMILY SSF56784 1 208 6.24E-50 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS06780 469879f31fe356ab3160b3c8afb65969 214 TIGRFAM TIGR01990 bPGM: beta-phosphoglucomutase 2 190 3.8E-74 T 11-11-2016 IPR010972 Beta-phosphoglucomutase GO:0000287|GO:0005975|GO:0008801 KEGG: 00500+5.4.2.6|MetaCyc: PWY-2721|MetaCyc: PWY-2722|MetaCyc: PWY-6317|MetaCyc: PWY-7459 Gferi_RS26980 69888a3324ae1dcd44ae7285971a7194 129 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 87 113 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26980 69888a3324ae1dcd44ae7285971a7194 129 SUPERFAMILY SSF88659 26 117 2.4E-19 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26980 69888a3324ae1dcd44ae7285971a7194 129 PRINTS PR00046 Major sigma-70 factor signature 102 113 3.2E-8 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26980 69888a3324ae1dcd44ae7285971a7194 129 PRINTS PR00046 Major sigma-70 factor signature 66 78 3.2E-8 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26980 69888a3324ae1dcd44ae7285971a7194 129 PRINTS PR00046 Major sigma-70 factor signature 87 102 3.2E-8 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26980 69888a3324ae1dcd44ae7285971a7194 129 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 116 7.3E-15 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26980 69888a3324ae1dcd44ae7285971a7194 129 Gene3D G3DSA:1.10.10.10 59 116 5.3E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26980 69888a3324ae1dcd44ae7285971a7194 129 Pfam PF04545 Sigma-70, region 4 65 114 1.5E-15 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS07365 1ba8039483fea7527eef01c01a87192c 229 Pfam PF04143 Sulphur transport 67 226 2.2E-32 T 11-11-2016 IPR007272 Sulphur transport domain Gferi_RS00420 fb55113206f7c96e65ee78629f6ba63d 277 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 6 30 1.5E-6 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00420 fb55113206f7c96e65ee78629f6ba63d 277 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00420 fb55113206f7c96e65ee78629f6ba63d 277 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 30 8.9E-5 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 Pfam PF00543 Nitrogen regulatory protein P-II 8 109 1.4E-34 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 PRINTS PR00340 P-II protein signature 87 107 1.9E-31 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 PRINTS PR00340 P-II protein signature 56 79 1.9E-31 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 PRINTS PR00340 P-II protein signature 27 45 1.9E-31 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 PRINTS PR00340 P-II protein signature 6 21 1.9E-31 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 SMART SM00938 8 109 2.6E-47 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 ProSitePatterns PS00638 P-II protein C-terminal region signature. 87 100 - T 11-11-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 Gene3D G3DSA:3.30.70.120 7 116 2.7E-39 T 11-11-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Gferi_RS12075 3b2e616747779ae46a31af662c8b1406 116 SUPERFAMILY SSF54913 6 116 4.73E-37 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 ProSitePatterns PS00449 ATP synthase a subunit signature. 158 167 - T 11-11-2016 IPR023011 ATPase, F0 complex, subunit A, active site Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 Gene3D G3DSA:1.20.120.220 73 232 1.7E-43 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 Pfam PF00119 ATP synthase A chain 24 229 1.0E-57 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 Hamap MF_01393 ATP synthase subunit a [atpB]. 1 233 13.859 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 SUPERFAMILY SSF81336 72 228 5.23E-37 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 23 230 6.7E-39 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 PRINTS PR00123 ATP synthase A subunit signature 215 230 4.2E-14 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 PRINTS PR00123 ATP synthase A subunit signature 80 96 4.2E-14 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 PRINTS PR00123 ATP synthase A subunit signature 139 154 4.2E-14 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS11050 adb64c7a49058cb4d6c06a0f1e557653 233 PRINTS PR00123 ATP synthase A subunit signature 155 177 4.2E-14 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 Gferi_RS25905 406574d584ce7d07ed6d68f1aec02169 497 SUPERFAMILY SSF53383 113 480 1.05E-93 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS25905 406574d584ce7d07ed6d68f1aec02169 497 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 80 1.4E-12 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS25905 406574d584ce7d07ed6d68f1aec02169 497 SUPERFAMILY SSF46785 11 82 9.49E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25905 406574d584ce7d07ed6d68f1aec02169 497 Gene3D G3DSA:1.10.10.10 7 81 6.6E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25905 406574d584ce7d07ed6d68f1aec02169 497 Pfam PF00155 Aminotransferase class I and II 143 466 7.6E-34 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS25905 406574d584ce7d07ed6d68f1aec02169 497 SMART SM00345 21 80 2.4E-12 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS25905 406574d584ce7d07ed6d68f1aec02169 497 Gene3D G3DSA:3.40.640.10 143 367 3.2E-76 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS11390 53914328112f1fe46d0cd6cb294f608e 437 Pfam PF02706 Chain length determinant protein 31 177 4.7E-22 T 11-11-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 Gferi_RS11390 53914328112f1fe46d0cd6cb294f608e 437 Pfam PF13807 G-rich domain on putative tyrosine kinase 347 418 8.6E-12 T 11-11-2016 IPR032807 Tyrosine kinase, G-rich domain Gferi_RS15930 f15547ddf1491d652e8ede4466514b22 93 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 23 42 - T 11-11-2016 IPR020808 Bacterial microcompartments protein, conserved site Gferi_RS15930 f15547ddf1491d652e8ede4466514b22 93 SUPERFAMILY SSF143414 5 90 2.75E-32 T 11-11-2016 Gferi_RS15930 f15547ddf1491d652e8ede4466514b22 93 Pfam PF00936 BMC domain 6 81 4.6E-29 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15930 f15547ddf1491d652e8ede4466514b22 93 SMART SM00877 5 81 2.2E-37 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15930 f15547ddf1491d652e8ede4466514b22 93 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 6 49 4.0E-16 T 11-11-2016 Gferi_RS24490 9e7a3f6127f86118036eefbdff2dc9a7 101 PIRSF PIRSF002599 2 97 2.7E-10 T 11-11-2016 IPR012156 Cold shock, CspA GO:0003676 Gferi_RS24490 9e7a3f6127f86118036eefbdff2dc9a7 101 Pfam PF06961 Protein of unknown function (DUF1294) 22 76 1.6E-20 T 11-11-2016 IPR010718 Protein of unknown function DUF1294 Gferi_RS13335 2a4e8f31974ce00d458db0a472e8eab2 92 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 29 83 7.1E-12 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS08285 eaab556e536a7e851f8c301ad4c4a389 228 Gene3D G3DSA:1.10.10.10 125 222 3.9E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08285 eaab556e536a7e851f8c301ad4c4a389 228 SUPERFAMILY SSF52172 1 178 8.25E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS08285 eaab556e536a7e851f8c301ad4c4a389 228 SMART SM00448 2 112 7.0E-40 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS08285 eaab556e536a7e851f8c301ad4c4a389 228 Gene3D G3DSA:3.40.50.2300 2 120 5.1E-36 T 11-11-2016 Gferi_RS08285 eaab556e536a7e851f8c301ad4c4a389 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 221 1.4E-23 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS08285 eaab556e536a7e851f8c301ad4c4a389 228 Pfam PF00072 Response regulator receiver domain 4 112 1.4E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS08285 eaab556e536a7e851f8c301ad4c4a389 228 SMART SM00862 144 221 7.1E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS09685 51a844d95ae97d39ea8b1ca4da93e6c7 376 Pfam PF01979 Amidohydrolase family 51 346 1.8E-13 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS09685 51a844d95ae97d39ea8b1ca4da93e6c7 376 SUPERFAMILY SSF51556 55 318 3.4E-47 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS09685 51a844d95ae97d39ea8b1ca4da93e6c7 376 Gene3D G3DSA:3.20.20.140 60 306 3.2E-88 T 11-11-2016 Gferi_RS09685 51a844d95ae97d39ea8b1ca4da93e6c7 376 Gene3D G3DSA:2.30.40.10 307 372 1.9E-8 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS09685 51a844d95ae97d39ea8b1ca4da93e6c7 376 PIRSF PIRSF039004 1 375 5.9E-108 T 11-11-2016 IPR020043 Amidohydrolase EF0837/AHA3915, putative Gferi_RS09685 51a844d95ae97d39ea8b1ca4da93e6c7 376 SUPERFAMILY SSF51338 322 337 1.23E-19 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS09685 51a844d95ae97d39ea8b1ca4da93e6c7 376 SUPERFAMILY SSF51338 1 55 1.23E-19 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS09685 51a844d95ae97d39ea8b1ca4da93e6c7 376 Gene3D G3DSA:2.30.40.10 2 59 1.0E-16 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 Gene3D G3DSA:3.40.50.300 588 753 1.1E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 Pfam PF06777 Helical and beta-bridge domain 486 580 1.0E-11 T 11-11-2016 IPR010643 Helical and beta-bridge domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167246|Reactome: R-HSA-2564830|Reactome: R-HSA-427413|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73863|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-77075 Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 SMART SM00488 183 419 6.9E-6 T 11-11-2016 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 Gene3D G3DSA:3.40.50.300 527 538 7.0E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 Gene3D G3DSA:3.40.50.300 185 288 7.0E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 Gene3D G3DSA:3.40.50.300 342 406 7.0E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 Pfam PF13307 Helicase C-terminal domain 598 760 3.2E-40 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 SMART SM00491 610 747 8.1E-12 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 SUPERFAMILY SSF52540 327 400 2.35E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 SUPERFAMILY SSF52540 203 264 2.35E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 SUPERFAMILY SSF52540 525 539 2.35E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 SUPERFAMILY SSF52540 567 741 2.35E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 Pfam PF06733 DEAD_2 276 399 3.9E-15 T 11-11-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 Gferi_RS17040 847b03e216376b3c19c40aaa6e41ea1f 783 Pfam PF00270 DEAD/DEAH box helicase 203 266 1.4E-4 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Gferi_RS22930 7a1b3d3e93b1bc901c35c699bd738ced 220 Gene3D G3DSA:3.50.40.10 62 189 2.4E-12 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS22930 7a1b3d3e93b1bc901c35c699bd738ced 220 SUPERFAMILY SSF56037 58 213 8.37E-20 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 Gferi_RS22930 7a1b3d3e93b1bc901c35c699bd738ced 220 SMART SM00873 63 210 9.3E-6 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS22930 7a1b3d3e93b1bc901c35c699bd738ced 220 Pfam PF03483 B3/4 domain 65 189 5.6E-13 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Gferi_RS00010 04cb2273e554f0dd133473f2c3721b97 208 SMART SM00422 8 76 5.5E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS00010 04cb2273e554f0dd133473f2c3721b97 208 Gene3D G3DSA:1.10.1660.10 5 74 3.3E-15 T 11-11-2016 Gferi_RS00010 04cb2273e554f0dd133473f2c3721b97 208 Pfam PF13411 MerR HTH family regulatory protein 8 74 1.2E-21 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS00010 04cb2273e554f0dd133473f2c3721b97 208 SUPERFAMILY SSF46955 8 77 5.04E-16 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS20195 13d8cc5e879b637283cd0a4dce7c671f 147 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 1 57 1.9E-13 T 11-11-2016 IPR022687 DTXR-type HTH domain GO:0003677 Gferi_RS20195 13d8cc5e879b637283cd0a4dce7c671f 147 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 63 120 2.4E-11 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS20195 13d8cc5e879b637283cd0a4dce7c671f 147 Gene3D G3DSA:1.10.60.10 74 123 1.1E-10 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS20195 13d8cc5e879b637283cd0a4dce7c671f 147 SUPERFAMILY SSF46785 8 119 2.81E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20195 13d8cc5e879b637283cd0a4dce7c671f 147 Gene3D G3DSA:1.10.10.10 1 70 1.3E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20195 13d8cc5e879b637283cd0a4dce7c671f 147 SMART SM00529 24 121 2.4E-18 T 11-11-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 Gferi_RS06445 fdcdb4e621bf71529d739b280faf623c 296 Gene3D G3DSA:3.40.50.300 8 286 2.2E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06445 fdcdb4e621bf71529d739b280faf623c 296 Pfam PF02374 Anion-transporting ATPase 16 296 2.8E-81 T 11-11-2016 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 Gferi_RS06445 fdcdb4e621bf71529d739b280faf623c 296 SUPERFAMILY SSF52540 12 274 9.32E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06445 fdcdb4e621bf71529d739b280faf623c 296 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 19 294 3.6E-77 T 11-11-2016 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 Gferi_RS21190 b9697a98a9d1ff66afccca5171e20079 173 Pfam PF02830 V4R domain 113 169 2.5E-13 T 11-11-2016 IPR004096 4-vinyl reductase, 4VR Gferi_RS21190 b9697a98a9d1ff66afccca5171e20079 173 Gene3D G3DSA:3.30.1380.20 4 170 2.2E-35 T 11-11-2016 Gferi_RS21190 b9697a98a9d1ff66afccca5171e20079 173 SMART SM00989 110 172 1.4E-17 T 11-11-2016 IPR004096 4-vinyl reductase, 4VR Gferi_RS21190 b9697a98a9d1ff66afccca5171e20079 173 SUPERFAMILY SSF111126 9 170 3.87E-28 T 11-11-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain Gferi_RS03980 e3a5f55dad5d6b9ade5b9858bbe7ad48 161 Pfam PF13673 Acetyltransferase (GNAT) domain 25 123 5.9E-8 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS03980 e3a5f55dad5d6b9ade5b9858bbe7ad48 161 Gene3D G3DSA:3.40.630.30 1 161 6.9E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS03980 e3a5f55dad5d6b9ade5b9858bbe7ad48 161 SUPERFAMILY SSF55729 1 159 1.48E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS21515 adcdf8e8bd294da100fce94dc84a1411 140 SUPERFAMILY SSF158472 65 114 2.75E-8 T 11-11-2016 Gferi_RS21515 adcdf8e8bd294da100fce94dc84a1411 140 Pfam PF00672 HAMP domain 46 113 1.3E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS21515 adcdf8e8bd294da100fce94dc84a1411 140 Gene3D G3DSA:3.30.450.20 8 40 6.1E-6 T 11-11-2016 Gferi_RS21515 adcdf8e8bd294da100fce94dc84a1411 140 SMART SM00304 64 119 1.4E-4 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS10880 2e8934972e9ef86b3ceefb03aa62eb01 59 Pfam PF09388 Spo0E like sporulation regulatory protein 9 50 1.3E-9 T 11-11-2016 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 Gferi_RS10880 2e8934972e9ef86b3ceefb03aa62eb01 59 SUPERFAMILY SSF140500 5 51 2.88E-9 T 11-11-2016 Gferi_RS10880 2e8934972e9ef86b3ceefb03aa62eb01 59 Gene3D G3DSA:1.20.58.160 4 50 3.2E-4 T 11-11-2016 IPR004152 GAT domain GO:0005622|GO:0006886 Gferi_RS26025 5ff772796dfd2a5be341ff3aa3c6c836 554 Gene3D G3DSA:3.20.20.350 1 553 0.0 T 11-11-2016 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 Gferi_RS26025 5ff772796dfd2a5be341ff3aa3c6c836 554 SUPERFAMILY SSF51703 1 553 8.24E-293 T 11-11-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS26025 5ff772796dfd2a5be341ff3aa3c6c836 554 Pfam PF02286 Dehydratase large subunit 1 552 0.0 T 11-11-2016 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 Gferi_RS26025 5ff772796dfd2a5be341ff3aa3c6c836 554 ProDom PD025428 SUBUNIT GLYCEROL DEHYDRATASE LARGE LYASE DHAB ALPHA DIOL B12-DEPENDENT METABOLISM 9 548 0.0 T 11-11-2016 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 Gferi_RS26025 5ff772796dfd2a5be341ff3aa3c6c836 554 PIRSF PIRSF018507 1 554 0.0 T 11-11-2016 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 Gferi_RS21755 9b47efa0b7cfb234f4ae262bbaf5827b 242 SMART SM00448 10 120 7.7E-45 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21755 9b47efa0b7cfb234f4ae262bbaf5827b 242 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 230 1.1E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS21755 9b47efa0b7cfb234f4ae262bbaf5827b 242 SUPERFAMILY SSF52172 11 129 1.11E-40 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS21755 9b47efa0b7cfb234f4ae262bbaf5827b 242 Gene3D G3DSA:1.10.10.10 138 233 9.4E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21755 9b47efa0b7cfb234f4ae262bbaf5827b 242 Pfam PF00072 Response regulator receiver domain 12 121 5.2E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21755 9b47efa0b7cfb234f4ae262bbaf5827b 242 SUPERFAMILY SSF46894 137 231 6.63E-29 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS21755 9b47efa0b7cfb234f4ae262bbaf5827b 242 Gene3D G3DSA:3.40.50.2300 11 129 3.7E-40 T 11-11-2016 Gferi_RS21755 9b47efa0b7cfb234f4ae262bbaf5827b 242 SMART SM00862 156 230 1.4E-28 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 519 692 5.4E-56 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 SUPERFAMILY SSF55383 68 154 3.53E-21 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 Gene3D G3DSA:3.30.457.10 77 153 1.8E-26 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 Gene3D G3DSA:3.30.457.10 36 76 3.1E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 Gene3D G3DSA:3.40.630.40 518 696 5.2E-61 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 Pfam PF11741 AMIN domain 176 283 1.0E-6 T 11-11-2016 IPR021731 AMIN domain Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 Pfam PF11741 AMIN domain 296 392 1.7E-9 T 11-11-2016 IPR021731 AMIN domain Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 SMART SM00646 579 692 2.6E-35 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 SUPERFAMILY SSF53187 518 697 1.51E-55 T 11-11-2016 Gferi_RS09485 73b25d242d1bcbb1b46aea5d7babb481 701 Pfam PF07833 Copper amine oxidase N-terminal domain 66 162 6.9E-27 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS27125 6bbd26fad3cec24c0de63cb0f9e566b9 320 SMART SM00471 121 240 0.0061 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS27125 6bbd26fad3cec24c0de63cb0f9e566b9 320 SUPERFAMILY SSF109604 122 264 8.11E-15 T 11-11-2016 Gferi_RS27125 6bbd26fad3cec24c0de63cb0f9e566b9 320 Pfam PF01966 HD domain 136 229 6.5E-11 T 11-11-2016 IPR006674 HD domain Gferi_RS27125 6bbd26fad3cec24c0de63cb0f9e566b9 320 Gene3D G3DSA:1.10.3210.10 125 265 6.2E-13 T 11-11-2016 IPR006674 HD domain Gferi_RS11355 f94aec9b075b8799d7f945b0b4c69fd1 316 SUPERFAMILY SSF53383 66 311 2.57E-21 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS11355 f94aec9b075b8799d7f945b0b4c69fd1 316 Gene3D G3DSA:3.40.640.10 68 201 4.2E-16 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 2 186 2.9E-78 T 11-11-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 SUPERFAMILY SSF52317 2 192 4.39E-54 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 Pfam PF00117 Glutamine amidotransferase class-I 4 186 2.6E-54 T 11-11-2016 IPR017926 Glutamine amidotransferase Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 2.1E-13 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 2.1E-13 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 2.1E-13 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 3.1E-5 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 3.1E-5 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00097 Anthranilate synthase component II signature 99 107 4.9E-34 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00097 Anthranilate synthase component II signature 2 16 4.9E-34 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00097 Anthranilate synthase component II signature 164 177 4.9E-34 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00097 Anthranilate synthase component II signature 119 131 4.9E-34 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00097 Anthranilate synthase component II signature 47 56 4.9E-34 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 PRINTS PR00097 Anthranilate synthase component II signature 74 85 4.9E-34 T 11-11-2016 Gferi_RS25405 46927cb7f426266d45b046b5c0746fdc 197 Gene3D G3DSA:3.40.50.880 2 189 8.9E-66 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS25475 9f169db517ff03282f932c9ad6356da9 302 Gene3D G3DSA:3.40.50.300 2 227 4.5E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25475 9f169db517ff03282f932c9ad6356da9 302 SUPERFAMILY SSF52540 3 227 1.07E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25475 9f169db517ff03282f932c9ad6356da9 302 SMART SM00382 30 210 2.9E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25475 9f169db517ff03282f932c9ad6356da9 302 Pfam PF00005 ABC transporter 22 161 1.0E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS25475 9f169db517ff03282f932c9ad6356da9 302 Pfam PF13732 Domain of unknown function (DUF4162) 217 296 6.3E-8 T 11-11-2016 IPR025302 Domain of unknown function DUF4162 Gferi_RS25475 9f169db517ff03282f932c9ad6356da9 302 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 Pfam PF00005 ABC transporter 297 426 9.1E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 Pfam PF00005 ABC transporter 21 159 1.3E-20 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 SUPERFAMILY SSF52540 3 219 1.16E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 SUPERFAMILY SSF52540 273 495 1.3E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 ProSitePatterns PS00211 ABC transporters family signature. 399 413 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 Gene3D G3DSA:3.40.50.300 278 498 9.6E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 Gene3D G3DSA:3.40.50.300 3 222 2.3E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 SMART SM00382 30 216 1.6E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS10255 1ba94a717e1db33d6d43654e8c482f66 526 SMART SM00382 306 475 8.1E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 Pfam PF08279 HTH domain 6 57 1.4E-10 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 SUPERFAMILY SSF54631 64 204 3.54E-19 T 11-11-2016 Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 PIRSF PIRSF026546 1 209 6.7E-90 T 11-11-2016 IPR016842 Protein of unknown function UCP026546, HtH-CBS Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 Pfam PF00571 CBS domain 143 203 1.1E-5 T 11-11-2016 IPR000644 CBS domain Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 Pfam PF00571 CBS domain 79 130 6.5E-4 T 11-11-2016 IPR000644 CBS domain Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 SMART SM00116 83 130 0.81 T 11-11-2016 IPR000644 CBS domain Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 SMART SM00116 149 204 0.023 T 11-11-2016 IPR000644 CBS domain Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 Gene3D G3DSA:3.10.580.10 77 205 4.0E-18 T 11-11-2016 Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 Gene3D G3DSA:1.10.10.10 2 61 2.5E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS02220 ff007a504b8302c0a2b708717d421438 209 SUPERFAMILY SSF46785 2 61 2.6E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08755 966b452bc7645d35cb55f3bd81959328 877 Pfam PF00391 PEP-utilising enzyme, mobile domain 803 872 2.1E-21 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS08755 966b452bc7645d35cb55f3bd81959328 877 Gene3D G3DSA:3.30.470.20 182 317 2.6E-40 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS08755 966b452bc7645d35cb55f3bd81959328 877 Gene3D G3DSA:3.30.1490.20 1 181 2.2E-35 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS08755 966b452bc7645d35cb55f3bd81959328 877 SUPERFAMILY SSF52009 778 874 6.15E-25 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS08755 966b452bc7645d35cb55f3bd81959328 877 SUPERFAMILY SSF56059 1 316 5.42E-66 T 11-11-2016 Gferi_RS08755 966b452bc7645d35cb55f3bd81959328 877 Gene3D G3DSA:3.50.30.10 801 874 2.6E-23 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS08755 966b452bc7645d35cb55f3bd81959328 877 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 310 2.8E-68 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS17895 d1268d9a7c445be478c66a5d4b0b0585 495 Gene3D G3DSA:3.30.565.10 334 490 3.2E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17895 d1268d9a7c445be478c66a5d4b0b0585 495 SUPERFAMILY SSF55874 339 487 1.03E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS17895 d1268d9a7c445be478c66a5d4b0b0585 495 Pfam PF06580 Histidine kinase 286 363 2.7E-22 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS17895 d1268d9a7c445be478c66a5d4b0b0585 495 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 384 489 2.3E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13325 2e08a76fa57e47ba52dca47d3d6926d7 303 Pfam PF02567 Phenazine biosynthesis-like protein 8 299 4.2E-71 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS13325 2e08a76fa57e47ba52dca47d3d6926d7 303 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 302 1.8E-72 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS13325 2e08a76fa57e47ba52dca47d3d6926d7 303 Gene3D G3DSA:3.10.310.10 5 128 1.7E-43 T 11-11-2016 Gferi_RS13325 2e08a76fa57e47ba52dca47d3d6926d7 303 PIRSF PIRSF016184 1 303 8.2E-83 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS13325 2e08a76fa57e47ba52dca47d3d6926d7 303 Gene3D G3DSA:3.10.310.10 129 284 5.0E-41 T 11-11-2016 Gferi_RS13325 2e08a76fa57e47ba52dca47d3d6926d7 303 SUPERFAMILY SSF54506 3 302 8.27E-72 T 11-11-2016 Gferi_RS14305 999de406bd4fd9e86006ef97d7070df7 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 185 1.4E-24 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS14305 999de406bd4fd9e86006ef97d7070df7 221 SUPERFAMILY SSF56784 1 196 9.21E-40 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS14305 999de406bd4fd9e86006ef97d7070df7 221 Gene3D G3DSA:3.40.50.1000 2 18 1.0E-30 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS14305 999de406bd4fd9e86006ef97d7070df7 221 Gene3D G3DSA:3.40.50.1000 92 201 1.0E-30 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS14305 999de406bd4fd9e86006ef97d7070df7 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 26 188 1.6E-10 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS14305 999de406bd4fd9e86006ef97d7070df7 221 Gene3D G3DSA:1.10.150.240 19 87 1.6E-9 T 11-11-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 Gferi_RS19455 cd20e5ae6d568f507a672f559b5ccf1a 269 PIRSF PIRSF006648 11 263 8.1E-16 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS19455 cd20e5ae6d568f507a672f559b5ccf1a 269 Pfam PF01061 ABC-2 type transporter 12 222 6.6E-11 T 11-11-2016 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Gferi_RS20545 22e8a977c38ea289f4ff596b13f42f61 240 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 59 226 1.4E-62 T 11-11-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 Gferi_RS20545 22e8a977c38ea289f4ff596b13f42f61 240 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 55 231 7.7E-58 T 11-11-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 Gferi_RS01800 aac5ade583c58476b26bd52979b3f465 261 Gene3D G3DSA:3.10.290.10 183 238 2.0E-14 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS01800 aac5ade583c58476b26bd52979b3f465 261 Pfam PF01479 S4 domain 186 231 1.2E-8 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS01800 aac5ade583c58476b26bd52979b3f465 261 SMART SM00363 185 245 8.9E-7 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS01800 aac5ade583c58476b26bd52979b3f465 261 SUPERFAMILY SSF55174 182 255 2.22E-28 T 11-11-2016 Gferi_RS01800 aac5ade583c58476b26bd52979b3f465 261 SUPERFAMILY SSF55174 40 130 2.22E-28 T 11-11-2016 Gferi_RS14905 7628e17507bb8fd4ca3602359fc85088 508 Pfam PF00672 HAMP domain 187 254 2.3E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS14905 7628e17507bb8fd4ca3602359fc85088 508 SUPERFAMILY SSF55874 342 494 3.41E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14905 7628e17507bb8fd4ca3602359fc85088 508 Gene3D G3DSA:3.30.565.10 341 495 1.5E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14905 7628e17507bb8fd4ca3602359fc85088 508 Pfam PF06580 Histidine kinase 288 367 1.5E-25 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS14905 7628e17507bb8fd4ca3602359fc85088 508 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 387 494 3.6E-6 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14905 7628e17507bb8fd4ca3602359fc85088 508 SUPERFAMILY SSF158472 207 258 1.57E-10 T 11-11-2016 Gferi_RS14905 7628e17507bb8fd4ca3602359fc85088 508 SMART SM00304 206 259 1.7E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS19595 a26e81094ad1e3034a38b109dd720190 211 SUPERFAMILY SSF52218 1 191 3.73E-44 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS19595 a26e81094ad1e3034a38b109dd720190 211 Gene3D G3DSA:3.40.50.360 1 184 2.2E-40 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS19595 a26e81094ad1e3034a38b109dd720190 211 Pfam PF03358 NADPH-dependent FMN reductase 1 156 2.4E-30 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 SUPERFAMILY SSF53774 3 330 1.83E-104 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 Pfam PF00710 Asparaginase, N-terminal 6 195 7.0E-55 T 11-11-2016 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 Gene3D G3DSA:3.40.50.1170 3 212 6.6E-63 T 11-11-2016 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 PIRSF PIRSF500176 3 331 4.8E-89 T 11-11-2016 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 PRINTS PR00139 Asparaginase/glutaminase family signature 7 18 9.6E-17 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 PRINTS PR00139 Asparaginase/glutaminase family signature 257 275 9.6E-17 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 PRINTS PR00139 Asparaginase/glutaminase family signature 84 102 9.6E-17 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 Gene3D G3DSA:3.40.50.40 213 326 1.9E-36 T 11-11-2016 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 SMART SM00870 6 322 7.9E-138 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 PIRSF PIRSF001220 1 331 2.3E-99 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 Gferi_RS03105 fe91ecb6f865140089bbb20bcc05d047 332 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 9 17 - T 11-11-2016 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 Gferi_RS15570 b93a505f3f8f4d1870f1906cec9eb79d 344 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 218 338 1.0E-23 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS15570 b93a505f3f8f4d1870f1906cec9eb79d 344 Pfam PF10114 Sensory domain found in PocR 16 176 3.7E-58 T 11-11-2016 IPR018771 PocR domain Gferi_RS15570 b93a505f3f8f4d1870f1906cec9eb79d 344 Gene3D G3DSA:1.10.287.950 158 343 2.6E-33 T 11-11-2016 Gferi_RS15570 b93a505f3f8f4d1870f1906cec9eb79d 344 SUPERFAMILY SSF58104 157 343 2.49E-37 T 11-11-2016 Gferi_RS15570 b93a505f3f8f4d1870f1906cec9eb79d 344 SMART SM00283 129 344 6.1E-4 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS13610 f500c4a2b491d3fb7063e27af7649e65 395 Gene3D G3DSA:3.40.640.10 55 273 1.0E-81 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS13610 f500c4a2b491d3fb7063e27af7649e65 395 Pfam PF00155 Aminotransferase class I and II 43 385 2.9E-38 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS13610 f500c4a2b491d3fb7063e27af7649e65 395 Gene3D G3DSA:3.90.1150.10 274 391 1.2E-12 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS13610 f500c4a2b491d3fb7063e27af7649e65 395 SUPERFAMILY SSF53383 3 392 1.65E-112 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS03110 0588177d362a879a04c3405320f02e0b 356 Pfam PF01966 HD domain 140 263 3.5E-20 T 11-11-2016 IPR006674 HD domain Gferi_RS03110 0588177d362a879a04c3405320f02e0b 356 SMART SM00471 136 272 4.4E-10 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS03110 0588177d362a879a04c3405320f02e0b 356 SUPERFAMILY SSF109604 121 302 5.76E-38 T 11-11-2016 Gferi_RS03110 0588177d362a879a04c3405320f02e0b 356 Gene3D G3DSA:1.10.3210.10 131 290 1.3E-25 T 11-11-2016 IPR006674 HD domain Gferi_RS06430 9a5848dea92a3c7115306bc9ee2f8c08 137 Gene3D G3DSA:1.10.10.10 2 129 3.9E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06430 9a5848dea92a3c7115306bc9ee2f8c08 137 Pfam PF01047 MarR family 23 80 5.4E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS06430 9a5848dea92a3c7115306bc9ee2f8c08 137 SUPERFAMILY SSF46785 2 131 2.63E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06430 9a5848dea92a3c7115306bc9ee2f8c08 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 39 55 8.9E-9 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS06430 9a5848dea92a3c7115306bc9ee2f8c08 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 71 8.9E-9 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS06430 9a5848dea92a3c7115306bc9ee2f8c08 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 91 8.9E-9 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS06430 9a5848dea92a3c7115306bc9ee2f8c08 137 SMART SM00347 15 115 1.2E-16 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS05085 f8e92d48348f3d1d632aee0f75d86251 296 Gene3D G3DSA:3.80.30.20 26 224 5.9E-7 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS05085 f8e92d48348f3d1d632aee0f75d86251 296 SUPERFAMILY SSF102114 18 223 4.71E-8 T 11-11-2016 Gferi_RS05085 f8e92d48348f3d1d632aee0f75d86251 296 Pfam PF04055 Radical SAM superfamily 27 193 1.4E-8 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS10715 46a63eb466be3099bece445618692d5c 542 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 120 1.2E-23 T 11-11-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 Gferi_RS10715 46a63eb466be3099bece445618692d5c 542 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 246 530 1.8E-49 T 11-11-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 Gferi_RS10715 46a63eb466be3099bece445618692d5c 542 Pfam PF07196 Flagellin hook IN motif 156 203 5.0E-6 T 11-11-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 SMART SM00388 289 356 4.3E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 Pfam PF00512 His Kinase A (phospho-acceptor) domain 289 356 6.7E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 509 3.7E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 SUPERFAMILY SSF55874 346 509 1.2E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 SUPERFAMILY SSF158472 217 264 2.09E-8 T 11-11-2016 Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 SMART SM00304 215 267 1.5E-5 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 Pfam PF00672 HAMP domain 197 260 1.1E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 Gene3D G3DSA:3.30.565.10 342 513 2.0E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 Gene3D G3DSA:1.10.287.130 280 341 9.5E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 SMART SM00387 401 512 9.8E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS00530 3f8cc3382276f550a64b1f4bfc1c8c6f 524 SUPERFAMILY SSF47384 274 356 1.33E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22655 dd10c7bbe6e4c68260c08e71bad399a5 286 Pfam PF00395 S-layer homology domain 91 131 3.3E-6 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS22655 dd10c7bbe6e4c68260c08e71bad399a5 286 Pfam PF00395 S-layer homology domain 28 70 4.1E-9 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS22655 dd10c7bbe6e4c68260c08e71bad399a5 286 Pfam PF00395 S-layer homology domain 158 193 1.5E-7 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS22655 dd10c7bbe6e4c68260c08e71bad399a5 286 SUPERFAMILY SSF49373 244 285 9.42E-5 T 11-11-2016 IPR008964 Invasin/intimin cell-adhesion fragments Gferi_RS22655 dd10c7bbe6e4c68260c08e71bad399a5 286 Gene3D G3DSA:2.60.40.1080 213 284 2.9E-5 T 11-11-2016 Gferi_RS14470 d057d42d8324aa5be867bb1ee7fbfe9a 178 Gene3D G3DSA:1.10.1740.10 9 90 1.9E-16 T 11-11-2016 Gferi_RS14470 d057d42d8324aa5be867bb1ee7fbfe9a 178 SUPERFAMILY SSF88659 110 174 2.24E-13 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14470 d057d42d8324aa5be867bb1ee7fbfe9a 178 SUPERFAMILY SSF88946 5 96 5.89E-17 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14470 d057d42d8324aa5be867bb1ee7fbfe9a 178 Gene3D G3DSA:1.10.10.10 114 175 9.4E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14470 d057d42d8324aa5be867bb1ee7fbfe9a 178 Pfam PF04542 Sigma-70 region 2 29 89 3.2E-8 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14470 d057d42d8324aa5be867bb1ee7fbfe9a 178 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 172 7.3E-20 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14470 d057d42d8324aa5be867bb1ee7fbfe9a 178 Pfam PF08281 Sigma-70, region 4 116 169 6.4E-10 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS23750 8b97fc819d07bca2dd993577ac268cde 326 Gene3D G3DSA:2.40.10.10 223 323 5.1E-15 T 11-11-2016 Gferi_RS23750 8b97fc819d07bca2dd993577ac268cde 326 SUPERFAMILY SSF50494 119 321 1.56E-15 T 11-11-2016 IPR009003 Peptidase S1, PA clan Gferi_RS00105 531d2a3a2c45f1a517d63d4b43dfdc11 235 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 67 225 2.3E-48 T 11-11-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Gferi_RS00105 531d2a3a2c45f1a517d63d4b43dfdc11 235 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 11-11-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Gferi_RS00105 531d2a3a2c45f1a517d63d4b43dfdc11 235 Gene3D G3DSA:3.10.290.10 1 64 2.0E-22 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS00105 531d2a3a2c45f1a517d63d4b43dfdc11 235 SUPERFAMILY SSF55120 57 233 2.4E-47 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS00105 531d2a3a2c45f1a517d63d4b43dfdc11 235 SUPERFAMILY SSF55174 1 67 5.49E-14 T 11-11-2016 Gferi_RS00105 531d2a3a2c45f1a517d63d4b43dfdc11 235 SMART SM00363 1 61 1.3E-12 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS00105 531d2a3a2c45f1a517d63d4b43dfdc11 235 Pfam PF00849 RNA pseudouridylate synthase 63 194 8.3E-21 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS00105 531d2a3a2c45f1a517d63d4b43dfdc11 235 Pfam PF01479 S4 domain 1 42 1.1E-11 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 Gene3D G3DSA:1.10.10.60 248 304 1.2E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 SUPERFAMILY SSF46689 253 302 2.51E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 Gene3D G3DSA:3.40.50.2300 1 130 6.1E-37 T 11-11-2016 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 SMART SM00342 268 351 6.8E-30 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 Pfam PF12833 Helix-turn-helix domain 275 350 2.0E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 SMART SM00448 2 117 1.2E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 SUPERFAMILY SSF46689 304 350 2.62E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 SUPERFAMILY SSF52172 1 139 5.69E-34 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 305 347 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 Gene3D G3DSA:1.10.10.60 305 350 7.7E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS02540 3541a50790cfe5e70be92ba2dc5514ad 351 Pfam PF00072 Response regulator receiver domain 5 117 4.6E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS25060 954d44743aa249c44a982054993c03f6 113 Gene3D G3DSA:1.20.1290.10 8 110 6.1E-21 T 11-11-2016 IPR029032 AhpD-like Reactome: R-HSA-5628897 Gferi_RS25060 954d44743aa249c44a982054993c03f6 113 SUPERFAMILY SSF69118 2 110 4.71E-23 T 11-11-2016 IPR029032 AhpD-like Reactome: R-HSA-5628897 Gferi_RS25060 954d44743aa249c44a982054993c03f6 113 Pfam PF02627 Carboxymuconolactone decarboxylase family 25 106 7.8E-15 T 11-11-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Gferi_RS23930 6d060a1bb2338f67b91969aef57087d7 194 SUPERFAMILY SSF51206 16 135 9.03E-20 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS23930 6d060a1bb2338f67b91969aef57087d7 194 Pfam PF00027 Cyclic nucleotide-binding domain 33 119 3.7E-10 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS23930 6d060a1bb2338f67b91969aef57087d7 194 Gene3D G3DSA:2.60.120.10 4 158 1.8E-33 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS05190 4fe6d0cda77c4508ea53981a839b634d 263 SUPERFAMILY SSF53850 19 249 1.6E-32 T 11-11-2016 Gferi_RS05190 4fe6d0cda77c4508ea53981a839b634d 263 Gene3D G3DSA:3.40.190.10 211 250 3.3E-19 T 11-11-2016 Gferi_RS05190 4fe6d0cda77c4508ea53981a839b634d 263 Gene3D G3DSA:3.40.190.10 27 108 3.3E-19 T 11-11-2016 Gferi_RS05190 4fe6d0cda77c4508ea53981a839b634d 263 Gene3D G3DSA:3.40.190.10 109 210 1.3E-43 T 11-11-2016 Gferi_RS05190 4fe6d0cda77c4508ea53981a839b634d 263 Pfam PF12849 PBP superfamily domain 15 241 3.8E-30 T 11-11-2016 IPR024370 PBP domain Gferi_RS13810 55929a62a51f7a24eac54e0fde936546 159 SUPERFAMILY SSF75217 1 157 2.25E-58 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases Gferi_RS13810 55929a62a51f7a24eac54e0fde936546 159 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 31.403 T 11-11-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS13810 55929a62a51f7a24eac54e0fde936546 159 Pfam PF02590 Predicted SPOUT methyltransferase 1 158 4.1E-60 T 11-11-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS13810 55929a62a51f7a24eac54e0fde936546 159 Gene3D G3DSA:3.40.1280.10 1 159 9.9E-64 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Gferi_RS13810 55929a62a51f7a24eac54e0fde936546 159 PIRSF PIRSF004505 1 159 1.1E-55 T 11-11-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS13810 55929a62a51f7a24eac54e0fde936546 159 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 159 1.8E-54 T 11-11-2016 IPR016051 Ribosomal RNA large subunit methyltransferase H GO:0005737|GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS02925 2d208cee50bde5632f5b035297dfbc63 343 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 46 319 2.5E-72 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS02925 2d208cee50bde5632f5b035297dfbc63 343 SUPERFAMILY SSF53850 143 280 1.92E-5 T 11-11-2016 Gferi_RS02925 2d208cee50bde5632f5b035297dfbc63 343 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 46 301 1.2E-56 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS02925 2d208cee50bde5632f5b035297dfbc63 343 PIRSF PIRSF006470 9 343 7.5E-71 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS08650 163f9251403bfcde8d0f4cc6015b8dad 213 Pfam PF01966 HD domain 28 152 7.4E-23 T 11-11-2016 IPR006674 HD domain Gferi_RS08650 163f9251403bfcde8d0f4cc6015b8dad 213 SMART SM00471 23 162 6.0E-12 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS08650 163f9251403bfcde8d0f4cc6015b8dad 213 TIGRFAM TIGR00277 HDIG: HDIG domain 27 121 3.2E-8 T 11-11-2016 IPR006675 HDIG domain Gferi_RS08650 163f9251403bfcde8d0f4cc6015b8dad 213 SUPERFAMILY SSF109604 23 191 5.73E-35 T 11-11-2016 Gferi_RS08650 163f9251403bfcde8d0f4cc6015b8dad 213 Gene3D G3DSA:1.10.3210.10 18 181 1.6E-22 T 11-11-2016 IPR006674 HD domain Gferi_RS21835 2a43cb40229d3066365e1c6f33727766 331 Gene3D G3DSA:3.20.20.140 3 330 5.0E-76 T 11-11-2016 Gferi_RS21835 2a43cb40229d3066365e1c6f33727766 331 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 3 327 2.8E-65 T 11-11-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 Gferi_RS21835 2a43cb40229d3066365e1c6f33727766 331 SUPERFAMILY SSF51556 1 330 3.63E-60 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS27085 6f350930240f4c4334ed2dc9367206d8 346 SUPERFAMILY SSF51905 1 165 4.2E-38 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS27085 6f350930240f4c4334ed2dc9367206d8 346 SUPERFAMILY SSF51905 260 336 4.2E-38 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS27085 6f350930240f4c4334ed2dc9367206d8 346 Gene3D G3DSA:3.50.50.60 2 215 1.9E-30 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS27085 6f350930240f4c4334ed2dc9367206d8 346 Gene3D G3DSA:3.50.50.60 257 307 1.9E-30 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS27085 6f350930240f4c4334ed2dc9367206d8 346 Pfam PF01494 FAD binding domain 2 279 1.4E-16 T 11-11-2016 IPR002938 FAD-binding domain GO:0071949 Gferi_RS27085 6f350930240f4c4334ed2dc9367206d8 346 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 3 25 1.9E-14 T 11-11-2016 Gferi_RS27085 6f350930240f4c4334ed2dc9367206d8 346 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 1.9E-14 T 11-11-2016 Gferi_RS27085 6f350930240f4c4334ed2dc9367206d8 346 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 264 279 1.9E-14 T 11-11-2016 Gferi_RS03600 3475e0fe8134c5cbfb3148bb6b7738a8 565 Pfam PF07508 Recombinase 212 332 2.8E-23 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS03600 3475e0fe8134c5cbfb3148bb6b7738a8 565 Gene3D G3DSA:3.40.50.1390 28 157 6.9E-18 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03600 3475e0fe8134c5cbfb3148bb6b7738a8 565 Pfam PF13408 Recombinase zinc beta ribbon domain 346 403 3.2E-13 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS03600 3475e0fe8134c5cbfb3148bb6b7738a8 565 SUPERFAMILY SSF53041 27 188 1.83E-24 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03600 3475e0fe8134c5cbfb3148bb6b7738a8 565 Pfam PF00239 Resolvase, N terminal domain 28 187 3.8E-18 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03600 3475e0fe8134c5cbfb3148bb6b7738a8 565 SMART SM00857 25 188 1.1E-25 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03600 3475e0fe8134c5cbfb3148bb6b7738a8 565 Pfam PF14287 Domain of unknown function (DUF4368) 505 536 2.4E-7 T 11-11-2016 IPR025378 Domain of unknown function DUF4368 Gferi_RS04070 cda0ab419c7ad377fd206e29b463317e 266 Gene3D G3DSA:3.30.1330.30 3 103 1.3E-22 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS04070 cda0ab419c7ad377fd206e29b463317e 266 SMART SM00967 31 107 6.9E-7 T 11-11-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Gferi_RS04070 cda0ab419c7ad377fd206e29b463317e 266 SUPERFAMILY SSF75217 95 265 3.99E-47 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases Gferi_RS04070 cda0ab419c7ad377fd206e29b463317e 266 Gene3D G3DSA:3.40.1280.10 112 265 2.5E-53 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Gferi_RS04070 cda0ab419c7ad377fd206e29b463317e 266 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 32 103 9.8E-7 T 11-11-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Gferi_RS04070 cda0ab419c7ad377fd206e29b463317e 266 Pfam PF00588 SpoU rRNA Methylase family 118 258 2.8E-40 T 11-11-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Gferi_RS04070 cda0ab419c7ad377fd206e29b463317e 266 SUPERFAMILY SSF55315 3 104 4.59E-19 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS08530 041cb1ca08f1b19816d9383ac80e5e1c 180 Gene3D G3DSA:1.10.1740.10 12 111 6.5E-23 T 11-11-2016 Gferi_RS08530 041cb1ca08f1b19816d9383ac80e5e1c 180 SUPERFAMILY SSF88659 107 175 3.36E-15 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS08530 041cb1ca08f1b19816d9383ac80e5e1c 180 Pfam PF04542 Sigma-70 region 2 29 96 1.0E-9 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS08530 041cb1ca08f1b19816d9383ac80e5e1c 180 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 174 5.3E-28 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS08530 041cb1ca08f1b19816d9383ac80e5e1c 180 Pfam PF08281 Sigma-70, region 4 119 170 6.3E-14 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS08530 041cb1ca08f1b19816d9383ac80e5e1c 180 SUPERFAMILY SSF88946 14 103 1.28E-19 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS08530 041cb1ca08f1b19816d9383ac80e5e1c 180 Gene3D G3DSA:1.10.10.10 112 176 2.1E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04680 a42b20a7e20a9be60fa00ea14799cd48 277 SUPERFAMILY SSF47090 28 96 1.04E-16 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS04680 a42b20a7e20a9be60fa00ea14799cd48 277 Pfam PF01471 Putative peptidoglycan binding domain 39 96 3.3E-16 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS04680 a42b20a7e20a9be60fa00ea14799cd48 277 Gene3D G3DSA:1.10.101.10 30 96 4.2E-19 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS26400 e75a3b93a1e783e66d55c240282bd1b6 410 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 321 408 7.7E-16 T 11-11-2016 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain Gferi_RS26400 e75a3b93a1e783e66d55c240282bd1b6 410 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 71 222 1.3E-45 T 11-11-2016 IPR004474 Cell envelope-related transcriptional attenuator domain Gferi_RS26400 e75a3b93a1e783e66d55c240282bd1b6 410 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 72 222 1.3E-47 T 11-11-2016 IPR004474 Cell envelope-related transcriptional attenuator domain Gferi_RS00160 b5b63f542ce9bed650bc808e4506c0d0 251 Gene3D G3DSA:1.10.10.580 185 244 2.7E-4 T 11-11-2016 IPR023093 Rad21/Rec8-like protein, C-terminal Gferi_RS00160 b5b63f542ce9bed650bc808e4506c0d0 251 Hamap MF_01805 Segregation and condensation protein A [scpA]. 3 245 24.762 T 11-11-2016 IPR003768 Segregation and condensation protein A Gferi_RS00160 b5b63f542ce9bed650bc808e4506c0d0 251 Pfam PF02616 Segregation and condensation protein ScpA 20 241 8.5E-38 T 11-11-2016 IPR003768 Segregation and condensation protein A Gferi_RS07765 3f1cf655f549594d16c097f2d5b90229 189 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 115 174 5.9E-11 T 11-11-2016 Gferi_RS24160 cd89c5696436665fe5225d90cd423388 684 SUPERFAMILY SSF53067 15 208 1.9E-24 T 11-11-2016 Gferi_RS24160 cd89c5696436665fe5225d90cd423388 684 SMART SM00842 15 212 6.1E-40 T 11-11-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 Gferi_RS24160 cd89c5696436665fe5225d90cd423388 684 Pfam PF14450 Cell division protein FtsA 223 385 9.7E-12 T 11-11-2016 Gferi_RS24160 cd89c5696436665fe5225d90cd423388 684 Gene3D G3DSA:3.30.420.40 220 355 3.4E-26 T 11-11-2016 Gferi_RS24160 cd89c5696436665fe5225d90cd423388 684 Gene3D G3DSA:3.30.420.40 13 156 2.6E-30 T 11-11-2016 Gferi_RS24160 cd89c5696436665fe5225d90cd423388 684 SUPERFAMILY SSF53067 221 390 9.72E-26 T 11-11-2016 Gferi_RS25820 6ae5ad9e16df56ebdfca6af516e04670 430 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 14 326 2.1E-97 T 11-11-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Gferi_RS25820 6ae5ad9e16df56ebdfca6af516e04670 430 Gene3D G3DSA:3.40.50.800 341 396 3.2E-5 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS25820 6ae5ad9e16df56ebdfca6af516e04670 430 Gene3D G3DSA:3.30.930.10 19 323 1.8E-77 T 11-11-2016 Gferi_RS25820 6ae5ad9e16df56ebdfca6af516e04670 430 SUPERFAMILY SSF52954 340 393 1.14E-5 T 11-11-2016 IPR004154 Anticodon-binding Gferi_RS25820 6ae5ad9e16df56ebdfca6af516e04670 430 SUPERFAMILY SSF55681 7 326 2.49E-60 T 11-11-2016 Gferi_RS25820 6ae5ad9e16df56ebdfca6af516e04670 430 Pfam PF13393 Histidyl-tRNA synthetase 11 321 5.2E-74 T 11-11-2016 Gferi_RS25820 6ae5ad9e16df56ebdfca6af516e04670 430 PIRSF PIRSF001549 2 422 2.6E-80 T 11-11-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Gferi_RS25820 6ae5ad9e16df56ebdfca6af516e04670 430 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 18 380 31.69 T 11-11-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 Gferi_RS14490 3593840919de506dc52bc3b92edc93be 231 Gene3D G3DSA:1.10.10.10 129 229 6.8E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14490 3593840919de506dc52bc3b92edc93be 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 227 3.8E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14490 3593840919de506dc52bc3b92edc93be 231 SUPERFAMILY SSF46894 128 227 4.25E-25 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS14490 3593840919de506dc52bc3b92edc93be 231 SMART SM00862 152 227 3.5E-18 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14490 3593840919de506dc52bc3b92edc93be 231 SMART SM00448 4 114 1.5E-38 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14490 3593840919de506dc52bc3b92edc93be 231 Gene3D G3DSA:3.40.50.2300 3 122 1.5E-36 T 11-11-2016 Gferi_RS14490 3593840919de506dc52bc3b92edc93be 231 SUPERFAMILY SSF52172 2 126 6.4E-36 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS14490 3593840919de506dc52bc3b92edc93be 231 Pfam PF00072 Response regulator receiver domain 6 115 3.0E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07000 942f0a5d7bb59332b8bf23f77ebe1d6b 364 Gene3D G3DSA:3.90.550.10 1 128 6.0E-21 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS07000 942f0a5d7bb59332b8bf23f77ebe1d6b 364 Gene3D G3DSA:1.25.40.10 190 348 3.3E-16 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS07000 942f0a5d7bb59332b8bf23f77ebe1d6b 364 Pfam PF00535 Glycosyl transferase family 2 5 114 3.7E-20 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS07000 942f0a5d7bb59332b8bf23f77ebe1d6b 364 SUPERFAMILY SSF48452 191 347 9.48E-11 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS07000 942f0a5d7bb59332b8bf23f77ebe1d6b 364 SUPERFAMILY SSF53448 1 156 1.2E-28 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS25955 8f088289697670e7668985968a72b129 508 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 11-11-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 Gferi_RS25955 8f088289697670e7668985968a72b129 508 SUPERFAMILY SSF48557 2 499 2.28E-203 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 Gferi_RS25955 8f088289697670e7668985968a72b129 508 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 504 1.7E-218 T 11-11-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS25955 8f088289697670e7668985968a72b129 508 Pfam PF00221 Aromatic amino acid lyase 11 469 1.5E-206 T 11-11-2016 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Gferi_RS25955 8f088289697670e7668985968a72b129 508 Gene3D G3DSA:1.10.275.10 2 197 7.4E-83 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal Gferi_RS25955 8f088289697670e7668985968a72b129 508 Gene3D G3DSA:1.20.200.10 198 505 1.2E-136 T 11-11-2016 Gferi_RS25955 8f088289697670e7668985968a72b129 508 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 502 48.171 T 11-11-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS15000 e68b5900351524019aa234762052ea70 453 Pfam PF02310 B12 binding domain 24 122 6.5E-15 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS15000 e68b5900351524019aa234762052ea70 453 SMART SM00729 183 390 1.7E-11 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS15000 e68b5900351524019aa234762052ea70 453 SUPERFAMILY SSF102114 178 405 2.09E-23 T 11-11-2016 Gferi_RS15000 e68b5900351524019aa234762052ea70 453 Gene3D G3DSA:3.80.30.20 185 374 4.7E-24 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS15000 e68b5900351524019aa234762052ea70 453 Pfam PF04055 Radical SAM superfamily 190 346 3.7E-11 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS19845 b69117c704a9070c066b957d0e9a878f 345 Gene3D G3DSA:2.70.98.10 12 344 2.0E-110 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 Gferi_RS19845 b69117c704a9070c066b957d0e9a878f 345 PIRSF PIRSF005096 1 345 3.7E-115 T 11-11-2016 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 Gferi_RS19845 b69117c704a9070c066b957d0e9a878f 345 SUPERFAMILY SSF74650 11 342 6.15E-102 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Gferi_RS19845 b69117c704a9070c066b957d0e9a878f 345 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 174 183 - T 11-11-2016 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 Gferi_RS19845 b69117c704a9070c066b957d0e9a878f 345 Pfam PF01263 Aldose 1-epimerase 18 341 1.8E-81 T 11-11-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 Gferi_RS25710 59f8bc5309b3831442232b422cf02b37 110 Gene3D G3DSA:3.10.20.30 21 90 2.2E-5 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS25710 59f8bc5309b3831442232b422cf02b37 110 SUPERFAMILY SSF54292 21 98 1.02E-20 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS25710 59f8bc5309b3831442232b422cf02b37 110 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 19 97 6.7E-32 T 11-11-2016 Gferi_RS14975 757907ed9a758e48fa2f459c420dcb5a 335 Gene3D G3DSA:3.40.630.30 142 277 1.5E-9 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS14975 757907ed9a758e48fa2f459c420dcb5a 335 SUPERFAMILY SSF55729 142 302 1.09E-14 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS14975 757907ed9a758e48fa2f459c420dcb5a 335 Pfam PF13480 Acetyltransferase (GNAT) domain 179 278 8.3E-10 T 11-11-2016 Gferi_RS16985 27ecde118b495661fd8913f5b16b7ff0 291 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 2 290 4.9E-68 T 11-11-2016 IPR005218 Diacylglycerol/lipid kinase Gferi_RS16985 27ecde118b495661fd8913f5b16b7ff0 291 SUPERFAMILY SSF111331 1 290 1.44E-73 T 11-11-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain Gferi_RS16985 27ecde118b495661fd8913f5b16b7ff0 291 SMART SM00046 2 130 4.2E-9 T 11-11-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Gferi_RS16985 27ecde118b495661fd8913f5b16b7ff0 291 Pfam PF00781 Diacylglycerol kinase catalytic domain 3 123 1.3E-28 T 11-11-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Gferi_RS21795 be79290dbeaf51cb065d9d895d98c9d6 392 Pfam PF00144 Beta-lactamase 30 384 6.3E-46 T 11-11-2016 IPR001466 Beta-lactamase-related Gferi_RS21795 be79290dbeaf51cb065d9d895d98c9d6 392 SUPERFAMILY SSF56601 10 223 3.07E-54 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS21795 be79290dbeaf51cb065d9d895d98c9d6 392 SUPERFAMILY SSF56601 261 374 3.07E-54 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS21795 be79290dbeaf51cb065d9d895d98c9d6 392 Gene3D G3DSA:3.40.710.10 9 391 2.3E-58 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR00418 DNA topoisomerase II family signature 438 452 4.7E-34 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR00418 DNA topoisomerase II family signature 531 548 4.7E-34 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR00418 DNA topoisomerase II family signature 592 608 4.7E-34 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR00418 DNA topoisomerase II family signature 36 51 4.7E-34 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR00418 DNA topoisomerase II family signature 551 563 4.7E-34 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR00418 DNA topoisomerase II family signature 71 84 4.7E-34 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR00418 DNA topoisomerase II family signature 117 131 4.7E-34 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR00418 DNA topoisomerase II family signature 513 529 4.7E-34 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 SUPERFAMILY SSF55874 7 226 1.66E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 588 649 6.4E-22 T 11-11-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 36 140 2.0E-5 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 Pfam PF01751 Toprim domain 437 557 8.1E-16 T 11-11-2016 IPR006171 Toprim domain Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 SUPERFAMILY SSF56719 420 653 8.37E-62 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 Gene3D G3DSA:3.30.565.10 19 221 1.7E-48 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR01159 DNA gyrase subunit B signature 629 645 5.6E-13 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR01159 DNA gyrase subunit B signature 204 217 5.6E-13 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR01159 DNA gyrase subunit B signature 375 389 5.6E-13 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR01159 DNA gyrase subunit B signature 389 409 5.6E-13 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR01159 DNA gyrase subunit B signature 488 497 5.6E-13 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 PRINTS PR01159 DNA gyrase subunit B signature 613 625 5.6E-13 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 Gene3D G3DSA:3.30.230.10 228 404 1.2E-19 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 SUPERFAMILY SSF54211 229 404 2.66E-19 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 ProSitePatterns PS00177 DNA topoisomerase II signature. 440 448 - T 11-11-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 Pfam PF00204 DNA gyrase B 229 404 1.0E-26 T 11-11-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 Gene3D G3DSA:3.40.50.670 423 640 1.4E-66 T 11-11-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS03345 a313f57d9443c1e90c04479a2bc980b6 662 SMART SM00433 36 653 1.7E-77 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Gferi_RS02660 a0f897d61070ecaa7476fc8fd262cae2 297 SUPERFAMILY SSF53448 1 266 3.13E-70 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS02660 a0f897d61070ecaa7476fc8fd262cae2 297 Pfam PF00483 Nucleotidyl transferase 5 264 1.3E-32 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS02660 a0f897d61070ecaa7476fc8fd262cae2 297 Gene3D G3DSA:3.90.550.10 4 270 1.5E-75 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS02660 a0f897d61070ecaa7476fc8fd262cae2 297 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 263 2.1E-120 T 11-11-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 Gferi_RS03025 9831c5d34e5a80587cc5e8f3b0af1dcd 268 TIGRFAM TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein 11 198 7.3E-69 T 11-11-2016 IPR005876 Cobalt transport protein ATP-binding subunit GO:0006824 Gferi_RS03025 9831c5d34e5a80587cc5e8f3b0af1dcd 268 SUPERFAMILY SSF52540 11 217 2.15E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03025 9831c5d34e5a80587cc5e8f3b0af1dcd 268 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS03025 9831c5d34e5a80587cc5e8f3b0af1dcd 268 SMART SM00382 27 212 1.7E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS03025 9831c5d34e5a80587cc5e8f3b0af1dcd 268 Pfam PF00005 ABC transporter 18 164 3.5E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS03025 9831c5d34e5a80587cc5e8f3b0af1dcd 268 Gene3D G3DSA:3.40.50.300 1 230 6.1E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12985 cc5e29fd0138de42937e6a2d873d0865 259 Pfam PF00005 ABC transporter 32 182 4.2E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS12985 cc5e29fd0138de42937e6a2d873d0865 259 SMART SM00382 40 241 1.9E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS12985 cc5e29fd0138de42937e6a2d873d0865 259 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS12985 cc5e29fd0138de42937e6a2d873d0865 259 SUPERFAMILY SSF52540 5 254 7.07E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12985 cc5e29fd0138de42937e6a2d873d0865 259 Gene3D G3DSA:3.40.50.300 5 256 4.0E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13175 9ca9aedbf76c8ffb8f4232f750670e3c 266 SUPERFAMILY SSF52540 3 263 1.54E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13175 9ca9aedbf76c8ffb8f4232f750670e3c 266 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 243 264 1.2E-9 T 11-11-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Gferi_RS13175 9ca9aedbf76c8ffb8f4232f750670e3c 266 Gene3D G3DSA:3.40.50.300 3 262 2.3E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13175 9ca9aedbf76c8ffb8f4232f750670e3c 266 Pfam PF00005 ABC transporter 20 192 5.4E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS13175 9ca9aedbf76c8ffb8f4232f750670e3c 266 SMART SM00382 28 241 2.9E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07275 d84460889505255474eac69a7f137f4e 154 Pfam PF11188 Protein of unknown function (DUF2975) 51 154 8.2E-13 T 11-11-2016 IPR021354 Protein of unknown function DUF2975 Gferi_RS22920 3303190c20861bccf580f6e37774a8f4 170 Pfam PF01569 PAP2 superfamily 63 167 1.3E-15 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS22920 3303190c20861bccf580f6e37774a8f4 170 SMART SM00014 59 166 4.2E-12 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS22920 3303190c20861bccf580f6e37774a8f4 170 SUPERFAMILY SSF48317 3 168 3.66E-31 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS22920 3303190c20861bccf580f6e37774a8f4 170 Gene3D G3DSA:1.20.144.10 5 167 9.6E-29 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS15755 92b15bd1f9ae16a3470233a440bf90b8 256 SUPERFAMILY SSF141523 60 175 6.41E-31 T 11-11-2016 Gferi_RS15755 92b15bd1f9ae16a3470233a440bf90b8 256 SUPERFAMILY SSF47090 184 252 3.14E-14 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS15755 92b15bd1f9ae16a3470233a440bf90b8 256 Pfam PF03734 L,D-transpeptidase catalytic domain 66 174 5.7E-20 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS15755 92b15bd1f9ae16a3470233a440bf90b8 256 Gene3D G3DSA:2.40.440.10 61 174 5.6E-33 T 11-11-2016 Gferi_RS15755 92b15bd1f9ae16a3470233a440bf90b8 256 Gene3D G3DSA:1.10.101.10 187 251 1.9E-14 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS15755 92b15bd1f9ae16a3470233a440bf90b8 256 Pfam PF01471 Putative peptidoglycan binding domain 194 249 2.2E-7 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS21470 7eb5815c2935739e0aa70bd30fce4449 134 SUPERFAMILY SSF159888 7 127 3.01E-14 T 11-11-2016 Gferi_RS21470 7eb5815c2935739e0aa70bd30fce4449 134 Pfam PF08818 Domain of unknown function (DU1801) 21 117 8.8E-11 T 11-11-2016 IPR014922 Domain of unknown function DUF1801 Gferi_RS16690 8e13e8b8be6e39a067ff3acbeaefcc66 259 Gene3D G3DSA:1.10.12.10 201 259 1.5E-24 T 11-11-2016 IPR014748 Crontonase, C-terminal Gferi_RS16690 8e13e8b8be6e39a067ff3acbeaefcc66 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 258 1.2E-74 T 11-11-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Gferi_RS16690 8e13e8b8be6e39a067ff3acbeaefcc66 259 Gene3D G3DSA:3.90.226.10 4 199 2.4E-78 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS16690 8e13e8b8be6e39a067ff3acbeaefcc66 259 SUPERFAMILY SSF52096 2 258 3.69E-95 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS16690 8e13e8b8be6e39a067ff3acbeaefcc66 259 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 11-11-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 Gferi_RS05170 480a7c17714cf0f396ed21e59e220335 234 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 36 226 1.4E-45 T 11-11-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 Gferi_RS05170 480a7c17714cf0f396ed21e59e220335 234 Pfam PF04973 Nicotinamide mononucleotide transporter 37 223 7.8E-49 T 11-11-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 Gferi_RS02945 b017abd33e5d0e53aac6bdc4266e3291 187 Gene3D G3DSA:2.20.28.10 151 182 1.3E-9 T 11-11-2016 IPR004039 Rubredoxin-type fold Gferi_RS02945 b017abd33e5d0e53aac6bdc4266e3291 187 SUPERFAMILY SSF47240 3 146 6.38E-34 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS02945 b017abd33e5d0e53aac6bdc4266e3291 187 Gene3D G3DSA:1.20.1260.10 2 144 3.6E-38 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS02945 b017abd33e5d0e53aac6bdc4266e3291 187 SUPERFAMILY SSF57802 152 183 2.54E-8 T 11-11-2016 Gferi_RS02945 b017abd33e5d0e53aac6bdc4266e3291 187 Pfam PF02915 Rubrerythrin 10 137 1.3E-22 T 11-11-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Gferi_RS19435 83e0505cacff2a0e51f3ce4bbc4430c3 423 Pfam PF04412 Protein of unknown function (DUF521) 1 411 2.3E-124 T 11-11-2016 IPR007506 Domain of unknown function DUF521 Gferi_RS19435 83e0505cacff2a0e51f3ce4bbc4430c3 423 Gene3D G3DSA:3.30.499.10 272 368 2.6E-4 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS06910 b3bdedc3e53d09c62bea87d5988aec33 250 SUPERFAMILY SSF53448 1 233 1.42E-68 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06910 b3bdedc3e53d09c62bea87d5988aec33 250 Gene3D G3DSA:3.90.550.10 1 234 1.6E-65 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06910 b3bdedc3e53d09c62bea87d5988aec33 250 Pfam PF00483 Nucleotidyl transferase 2 231 7.8E-56 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS04035 26a1454b7011f49f5c021c0a9a561d4b 154 Pfam PF04463 Protein of unknown function (DUF523) 2 145 3.3E-43 T 11-11-2016 IPR007553 Domain of unknown function DUF523 Gferi_RS07820 ca919dc7018f69303054715533fee664 207 SUPERFAMILY SSF52242 68 206 4.97E-41 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS07820 ca919dc7018f69303054715533fee664 207 SMART SM01018 1 83 4.2E-24 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS07820 ca919dc7018f69303054715533fee664 207 Pfam PF02310 B12 binding domain 90 193 1.3E-24 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS07820 ca919dc7018f69303054715533fee664 207 Gene3D G3DSA:3.40.50.280 75 206 8.3E-45 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS07820 ca919dc7018f69303054715533fee664 207 SUPERFAMILY SSF47644 3 82 8.37E-22 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS07820 ca919dc7018f69303054715533fee664 207 Pfam PF02607 B12 binding domain 3 75 3.5E-20 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS07820 ca919dc7018f69303054715533fee664 207 Gene3D G3DSA:1.10.1240.10 4 74 5.0E-19 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS15890 52b6625c970fe846f0d66fbbc854182c 94 SUPERFAMILY SSF143414 4 90 2.75E-31 T 11-11-2016 Gferi_RS15890 52b6625c970fe846f0d66fbbc854182c 94 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 23 42 - T 11-11-2016 IPR020808 Bacterial microcompartments protein, conserved site Gferi_RS15890 52b6625c970fe846f0d66fbbc854182c 94 SMART SM00877 5 81 3.7E-35 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15890 52b6625c970fe846f0d66fbbc854182c 94 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 3 34 2.0E-8 T 11-11-2016 Gferi_RS15890 52b6625c970fe846f0d66fbbc854182c 94 Pfam PF00936 BMC domain 6 81 2.8E-27 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS21510 7dec635ebe185a5dddaec35b6d249efc 95 Pfam PF14286 DHHW protein 43 85 4.5E-8 T 11-11-2016 IPR025945 DHHW protein Gferi_RS20240 e333baf4083fa7392ccb9d6ad900db29 167 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 30 141 3.7E-53 T 11-11-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Gferi_RS20240 e333baf4083fa7392ccb9d6ad900db29 167 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 167 68.838 T 11-11-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Gferi_RS20240 e333baf4083fa7392ccb9d6ad900db29 167 Pfam PF14489 QueF-like protein 64 142 1.1E-34 T 11-11-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 Gferi_RS20240 e333baf4083fa7392ccb9d6ad900db29 167 SUPERFAMILY SSF55620 25 135 8.15E-28 T 11-11-2016 Gferi_RS20240 e333baf4083fa7392ccb9d6ad900db29 167 Gene3D G3DSA:3.30.1130.10 21 151 9.1E-56 T 11-11-2016 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 Pfam PF00970 Oxidoreductase FAD-binding domain 50 92 9.9E-5 T 11-11-2016 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 PIRSF PIRSF006816 4 265 3.8E-69 T 11-11-2016 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 Gene3D G3DSA:2.40.30.10 9 83 5.6E-12 T 11-11-2016 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 Gene3D G3DSA:2.10.240.10 228 257 6.4E-12 T 11-11-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 Pfam PF00175 Oxidoreductase NAD-binding domain 108 209 4.4E-18 T 11-11-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 TIGRFAM TIGR02911 sulfite_red_B: sulfite reductase, subunit B 4 265 4.1E-120 T 11-11-2016 IPR014260 Sulphite reductase, subunit B Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 PRINTS PR00410 Phenol hydroxylase reductase family signature 33 45 1.0E-6 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 PRINTS PR00410 Phenol hydroxylase reductase family signature 105 124 1.0E-6 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 204 1.0E-6 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 SUPERFAMILY SSF52343 89 258 3.01E-30 T 11-11-2016 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 SUPERFAMILY SSF63380 6 94 4.66E-19 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 228 258 2.1E-8 T 11-11-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Gferi_RS11905 846b222a535f65fe9bade3347b62cf55 265 Gene3D G3DSA:3.40.50.80 84 224 2.6E-34 T 11-11-2016 Gferi_RS23785 5b2d8271103b50d5757f044b0858f65c 159 Gene3D G3DSA:2.60.40.730 44 154 3.3E-23 T 11-11-2016 Gferi_RS23785 5b2d8271103b50d5757f044b0858f65c 159 SUPERFAMILY SSF49367 83 154 6.02E-17 T 11-11-2016 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain GO:0005506|GO:0016491|GO:0055114 Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 Gene3D G3DSA:3.20.20.140 60 329 1.8E-64 T 11-11-2016 Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 Pfam PF01979 Amidohydrolase family 49 377 9.4E-22 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 Gene3D G3DSA:2.30.40.10 5 59 2.5E-4 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 PIRSF PIRSF038994 3 381 1.0E-84 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 Gene3D G3DSA:2.30.40.10 358 388 1.9E-7 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 SUPERFAMILY SSF51556 52 349 4.01E-62 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 Gene3D G3DSA:2.30.40.10 330 357 1.7E-10 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 SUPERFAMILY SSF51338 349 379 1.09E-12 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS07175 1b45ff0ba60976d04552e7739206fe0f 399 SUPERFAMILY SSF51338 3 51 1.09E-12 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS14880 aa65eda5259607c6ed1e38a0f553bc90 338 Gene3D G3DSA:3.40.800.10 8 331 1.8E-101 T 11-11-2016 IPR023696 Ureohydrolase domain Gferi_RS14880 aa65eda5259607c6ed1e38a0f553bc90 338 Pfam PF00491 Arginase family 52 325 1.7E-61 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS14880 aa65eda5259607c6ed1e38a0f553bc90 338 Hamap MF_00737 Formimidoylglutamase [hutG]. 9 327 42.095 T 11-11-2016 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 Gferi_RS14880 aa65eda5259607c6ed1e38a0f553bc90 338 TIGRFAM TIGR01227 hutG: formimidoylglutamase 14 327 9.4E-86 T 11-11-2016 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 Gferi_RS14880 aa65eda5259607c6ed1e38a0f553bc90 338 SUPERFAMILY SSF52768 14 327 4.14E-80 T 11-11-2016 Gferi_RS14880 aa65eda5259607c6ed1e38a0f553bc90 338 PIRSF PIRSF036979 37 333 1.0E-40 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 Gferi_RS20050 b63e6e29e25254cae5b501c2b08f49e3 538 SUPERFAMILY SSF53850 40 534 3.62E-124 T 11-11-2016 Gferi_RS20050 b63e6e29e25254cae5b501c2b08f49e3 538 Gene3D G3DSA:3.10.105.10 287 508 9.2E-43 T 11-11-2016 Gferi_RS20050 b63e6e29e25254cae5b501c2b08f49e3 538 PIRSF PIRSF002741 3 537 2.1E-99 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS20050 b63e6e29e25254cae5b501c2b08f49e3 538 TIGRFAM TIGR02294 nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein 41 535 9.3E-207 T 11-11-2016 IPR011980 Periplasmic nickel-binding protein GO:0015675|GO:0016151|GO:0020037 Gferi_RS20050 b63e6e29e25254cae5b501c2b08f49e3 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 453 1.6E-91 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS20050 b63e6e29e25254cae5b501c2b08f49e3 538 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 90 112 - T 11-11-2016 IPR023765 Solute-binding protein family 5, conserved site Gferi_RS20050 b63e6e29e25254cae5b501c2b08f49e3 538 Gene3D G3DSA:3.90.76.10 56 210 1.3E-37 T 11-11-2016 Gferi_RS08790 8b39147cffc03cd4e29c8a8c51fdfeea 495 Pfam PF01547 Bacterial extracellular solute-binding protein 80 367 9.1E-12 T 11-11-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 Gferi_RS08790 8b39147cffc03cd4e29c8a8c51fdfeea 495 Gene3D G3DSA:3.40.190.10 169 372 1.2E-33 T 11-11-2016 Gferi_RS08790 8b39147cffc03cd4e29c8a8c51fdfeea 495 Gene3D G3DSA:3.40.190.10 446 493 1.2E-33 T 11-11-2016 Gferi_RS08790 8b39147cffc03cd4e29c8a8c51fdfeea 495 Gene3D G3DSA:3.40.190.10 1 165 9.8E-14 T 11-11-2016 Gferi_RS08790 8b39147cffc03cd4e29c8a8c51fdfeea 495 SUPERFAMILY SSF53850 20 494 2.86E-47 T 11-11-2016 Gferi_RS13870 a39af9d279cc12f66fc871466e478d2a 288 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 6 89 6.9E-17 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Gferi_RS13870 a39af9d279cc12f66fc871466e478d2a 288 SUPERFAMILY SSF56349 6 273 5.3E-49 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS13870 a39af9d279cc12f66fc871466e478d2a 288 Gene3D G3DSA:1.10.443.10 108 274 8.7E-39 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS13870 a39af9d279cc12f66fc871466e478d2a 288 Gene3D G3DSA:1.10.150.130 19 87 2.3E-9 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal Gferi_RS13870 a39af9d279cc12f66fc871466e478d2a 288 Pfam PF00589 Phage integrase family 109 271 3.7E-34 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Gene3D G3DSA:1.25.40.10 179 216 2.4E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Pfam PF13176 Tetratricopeptide repeat 204 227 0.011 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Pfam PF00535 Glycosyl transferase family 2 4 149 4.4E-23 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Gene3D G3DSA:1.25.40.10 217 304 1.8E-13 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SUPERFAMILY SSF48452 319 477 1.3E-16 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SMART SM00028 386 419 0.84 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SMART SM00028 549 582 440.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SMART SM00028 318 351 3.2E-6 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SMART SM00028 273 306 7.4 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SMART SM00028 420 450 93.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SMART SM00028 239 272 86.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SMART SM00028 201 235 26.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Gene3D G3DSA:3.90.550.10 3 116 4.6E-17 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Pfam PF13181 Tetratricopeptide repeat 318 350 5.2E-8 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Pfam PF13181 Tetratricopeptide repeat 422 445 0.033 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Pfam PF13181 Tetratricopeptide repeat 386 414 0.01 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SUPERFAMILY SSF48452 189 368 4.93E-20 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 SUPERFAMILY SSF53448 3 117 2.88E-26 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Gene3D G3DSA:1.25.40.10 550 581 1.8E-26 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06900 53588c0e310945a5d2d59e964aeeb5be 602 Gene3D G3DSA:1.25.40.10 319 483 1.8E-26 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10980 edf8f088458d3cc3f3044f88a109c6c3 250 Gene3D G3DSA:3.30.360.40 178 250 3.7E-22 T 11-11-2016 Gferi_RS10980 edf8f088458d3cc3f3044f88a109c6c3 250 SUPERFAMILY SSF143842 40 247 1.05E-38 T 11-11-2016 IPR014794 TATA-box binding Gferi_RS10980 edf8f088458d3cc3f3044f88a109c6c3 250 Pfam PF08680 TATA-box binding 55 250 6.5E-42 T 11-11-2016 IPR014794 TATA-box binding Gferi_RS25280 706a5781c5899c951ede226c9a06d23f 282 Gene3D G3DSA:3.20.20.70 18 279 4.5E-65 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS25280 706a5781c5899c951ede226c9a06d23f 282 SMART SM00729 51 259 3.4E-10 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS25280 706a5781c5899c951ede226c9a06d23f 282 Pfam PF04055 Radical SAM superfamily 57 217 3.0E-12 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS25280 706a5781c5899c951ede226c9a06d23f 282 Hamap MF_00206 Lipoyl synthase [lipA]. 1 282 134.674 T 11-11-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS25280 706a5781c5899c951ede226c9a06d23f 282 SUPERFAMILY SSF102114 16 278 9.68E-60 T 11-11-2016 Gferi_RS25280 706a5781c5899c951ede226c9a06d23f 282 TIGRFAM TIGR00510 lipA: lipoyl synthase 3 280 2.0E-115 T 11-11-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS25280 706a5781c5899c951ede226c9a06d23f 282 PIRSF PIRSF005963 1 282 1.0E-131 T 11-11-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS25280 706a5781c5899c951ede226c9a06d23f 282 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 6 40 3.5E-7 T 11-11-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 84 95 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 SUPERFAMILY SSF54862 6 108 1.58E-16 T 11-11-2016 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 ProSitePatterns PS01087 Radical activating enzymes signature. 17 38 - T 11-11-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 Pfam PF04055 Radical SAM superfamily 24 235 8.4E-29 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 6 291 3.1E-114 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 Gene3D G3DSA:3.30.70.20 36 117 5.0E-13 T 11-11-2016 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 SUPERFAMILY SSF102114 81 265 2.35E-20 T 11-11-2016 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 Pfam PF13353 4Fe-4S single cluster domain 16 51 1.1E-5 T 11-11-2016 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 Pfam PF13353 4Fe-4S single cluster domain 82 172 2.8E-9 T 11-11-2016 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 Gene3D G3DSA:3.80.30.10 124 299 1.7E-62 T 11-11-2016 Gferi_RS16240 0a35b9546b809d87eebd51fbfd80156c 300 PIRSF PIRSF000371 2 300 4.5E-106 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS03005 4406703c10976b64ce5fa5cb62d9d713 162 SUPERFAMILY SSF55826 4 160 5.36E-43 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS03005 4406703c10976b64ce5fa5cb62d9d713 162 Gene3D G3DSA:3.90.960.10 1 162 3.7E-59 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS03005 4406703c10976b64ce5fa5cb62d9d713 162 Pfam PF04073 Aminoacyl-tRNA editing domain 25 149 6.4E-29 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 Gene3D G3DSA:3.40.50.970 2 175 2.6E-74 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 SUPERFAMILY SSF52467 187 349 1.5E-57 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 527 8.3E-51 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 327 6.4E-46 T 11-11-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 Gene3D G3DSA:3.40.50.1220 188 342 3.4E-62 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 SUPERFAMILY SSF52518 3 174 6.55E-64 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 SUPERFAMILY SSF52518 355 550 1.5E-67 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 Gene3D G3DSA:3.40.50.970 343 542 9.3E-74 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 171 1.9E-59 T 11-11-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 11-11-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 Gferi_RS05560 12765acb7c77efea249d36d90713c9c8 551 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 549 1.3E-226 T 11-11-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Gferi_RS08885 1ed795a3f68153d810147fa788b4b316 260 Pfam PF02535 ZIP Zinc transporter 109 255 1.6E-24 T 11-11-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Gferi_RS20270 c036bdf6509c835937ad2eb01f89ab9b 731 Pfam PF13361 UvrD-like helicase C-terminal domain 288 611 7.1E-47 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Gferi_RS20270 c036bdf6509c835937ad2eb01f89ab9b 731 Pfam PF00580 UvrD/REP helicase N-terminal domain 18 282 9.0E-53 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 Gferi_RS20270 c036bdf6509c835937ad2eb01f89ab9b 731 Gene3D G3DSA:3.40.50.300 546 632 6.8E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20270 c036bdf6509c835937ad2eb01f89ab9b 731 Gene3D G3DSA:3.40.50.300 290 395 6.8E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20270 c036bdf6509c835937ad2eb01f89ab9b 731 Gene3D G3DSA:3.40.50.300 16 285 8.0E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20270 c036bdf6509c835937ad2eb01f89ab9b 731 SUPERFAMILY SSF52540 12 636 1.47E-124 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20270 c036bdf6509c835937ad2eb01f89ab9b 731 Gene3D G3DSA:1.10.486.10 396 500 1.8E-7 T 11-11-2016 Gferi_RS00755 328535587daea03efdc3203eb73bbe5a 352 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 4 351 35.53 T 11-11-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Gferi_RS00755 328535587daea03efdc3203eb73bbe5a 352 PIRSF PIRSF004640 1 352 2.9E-153 T 11-11-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Gferi_RS00755 328535587daea03efdc3203eb73bbe5a 352 SUPERFAMILY SSF51717 13 211 5.41E-12 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS00755 328535587daea03efdc3203eb73bbe5a 352 SUPERFAMILY SSF56014 263 347 1.42E-13 T 11-11-2016 Gferi_RS00755 328535587daea03efdc3203eb73bbe5a 352 Gene3D G3DSA:3.20.20.70 32 129 1.3E-9 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS00755 328535587daea03efdc3203eb73bbe5a 352 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 6 348 2.5E-138 T 11-11-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Gferi_RS00755 328535587daea03efdc3203eb73bbe5a 352 Pfam PF04551 GcpE protein 9 350 6.5E-146 T 11-11-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 SUPERFAMILY SSF52794 398 479 5.23E-9 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 SUPERFAMILY SSF55804 534 675 1.26E-29 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 542 675 5.4E-27 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 Pfam PF00874 PRD domain 298 386 1.3E-20 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 Gene3D G3DSA:1.10.1790.10 292 389 3.2E-20 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 Gene3D G3DSA:3.40.930.10 533 679 2.2E-46 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 Gene3D G3DSA:1.10.10.10 5 69 3.4E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 Gene3D G3DSA:3.40.50.270 399 481 3.4E-9 T 11-11-2016 Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 Pfam PF08279 HTH domain 11 66 2.3E-8 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 SUPERFAMILY SSF46785 5 50 3.33E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22625 b82ff30d516edecfe34e43e5112bcf20 687 SUPERFAMILY SSF63520 290 387 1.11E-21 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS10645 355eee298f32ce73fba7cbcd837ebfb1 432 Pfam PF07690 Major Facilitator Superfamily 24 380 1.4E-38 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS10645 355eee298f32ce73fba7cbcd837ebfb1 432 Gene3D G3DSA:1.20.1250.20 231 421 1.9E-20 T 11-11-2016 Gferi_RS10645 355eee298f32ce73fba7cbcd837ebfb1 432 SUPERFAMILY SSF103473 8 421 3.27E-68 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS10645 355eee298f32ce73fba7cbcd837ebfb1 432 Gene3D G3DSA:1.20.1250.20 15 207 1.6E-33 T 11-11-2016 Gferi_RS10645 355eee298f32ce73fba7cbcd837ebfb1 432 PIRSF PIRSF002808 2 430 4.2E-39 T 11-11-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 Gferi_RS14630 8a194dd0406917d63bd271de574e2c30 64 Gene3D G3DSA:3.30.70.100 3 44 2.2E-9 T 11-11-2016 Gferi_RS14630 8a194dd0406917d63bd271de574e2c30 64 Pfam PF00403 Heavy-metal-associated domain 5 44 1.1E-5 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS14630 8a194dd0406917d63bd271de574e2c30 64 SUPERFAMILY SSF55008 1 45 2.75E-8 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS11235 1f5fc5eeda579499facc868afe0b0bc4 140 PRINTS PR00124 ATP synthase C subunit signature 74 93 4.8E-5 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11235 1f5fc5eeda579499facc868afe0b0bc4 140 PRINTS PR00124 ATP synthase C subunit signature 112 137 4.8E-5 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11235 1f5fc5eeda579499facc868afe0b0bc4 140 Pfam PF00137 ATP synthase subunit C 77 136 5.8E-18 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Gferi_RS11235 1f5fc5eeda579499facc868afe0b0bc4 140 SUPERFAMILY SSF81333 71 138 1.57E-16 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Gferi_RS11235 1f5fc5eeda579499facc868afe0b0bc4 140 Hamap MF_01396 ATP synthase subunit c [atpH]. 75 139 9.918 T 11-11-2016 Gferi_RS11235 1f5fc5eeda579499facc868afe0b0bc4 140 Gene3D G3DSA:1.20.120.610 8 138 2.1E-18 T 11-11-2016 Gferi_RS02120 560b985a0c3dcdc04f34b49d738b7da1 394 SUPERFAMILY SSF53822 42 387 1.8E-90 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS02120 560b985a0c3dcdc04f34b49d738b7da1 394 Pfam PF13458 Periplasmic binding protein 42 383 1.2E-65 T 11-11-2016 IPR028081 Leucine-binding protein domain Gferi_RS02120 560b985a0c3dcdc04f34b49d738b7da1 394 Gene3D G3DSA:3.40.50.2300 42 243 1.8E-59 T 11-11-2016 Gferi_RS02120 560b985a0c3dcdc04f34b49d738b7da1 394 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 42 58 1.2E-5 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS02120 560b985a0c3dcdc04f34b49d738b7da1 394 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 64 80 1.2E-5 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS02120 560b985a0c3dcdc04f34b49d738b7da1 394 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 83 101 1.2E-5 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS11150 dd17c710dedd2e84f5ab36bc5d557cfd 217 SUPERFAMILY SSF100950 3 215 4.4E-80 T 11-11-2016 Gferi_RS11150 dd17c710dedd2e84f5ab36bc5d557cfd 217 SMART SM00882 4 215 4.8E-73 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS11150 dd17c710dedd2e84f5ab36bc5d557cfd 217 Pfam PF01144 Coenzyme A transferase 5 213 1.4E-66 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS11150 dd17c710dedd2e84f5ab36bc5d557cfd 217 Gene3D G3DSA:3.40.1080.10 1 213 1.6E-85 T 11-11-2016 Gferi_RS11150 dd17c710dedd2e84f5ab36bc5d557cfd 217 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 4 213 3.2E-68 T 11-11-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Gferi_RS11150 dd17c710dedd2e84f5ab36bc5d557cfd 217 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 16 31 - T 11-11-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 SMART SM00354 2 72 1.5E-33 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 SUPERFAMILY SSF53822 62 337 2.19E-62 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 Gene3D G3DSA:3.40.50.2300 56 179 4.0E-42 T 11-11-2016 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 2.5E-5 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 2.5E-5 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 Pfam PF13377 Periplasmic binding protein-like domain 176 334 4.7E-22 T 11-11-2016 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 Gene3D G3DSA:1.10.260.40 4 55 7.6E-24 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 Gene3D G3DSA:3.40.50.2300 180 317 8.5E-36 T 11-11-2016 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 2.1E-19 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 SUPERFAMILY SSF47413 2 60 2.41E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS08375 ec570d85bb43f53e7a132bcfec90e9bf 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 11-11-2016 Gferi_RS06250 49d3fec8b14523e0d39665d66ee3b0ab 345 Pfam PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) 2 345 3.5E-153 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS06250 49d3fec8b14523e0d39665d66ee3b0ab 345 TIGRFAM TIGR01918 various_sel_PB: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family 3 345 2.4E-133 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS21810 cd36a814dcd7829fbea9db355ced92a4 273 PRINTS PR00207 Flagellin signature 109 132 7.5E-22 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS21810 cd36a814dcd7829fbea9db355ced92a4 273 PRINTS PR00207 Flagellin signature 35 52 7.5E-22 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS21810 cd36a814dcd7829fbea9db355ced92a4 273 PRINTS PR00207 Flagellin signature 74 93 7.5E-22 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS21810 cd36a814dcd7829fbea9db355ced92a4 273 Pfam PF00700 Bacterial flagellin C-terminal helical region 188 272 3.9E-30 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS21810 cd36a814dcd7829fbea9db355ced92a4 273 Gene3D G3DSA:1.20.1330.10 52 229 8.5E-66 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS21810 cd36a814dcd7829fbea9db355ced92a4 273 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 2.6E-42 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS21810 cd36a814dcd7829fbea9db355ced92a4 273 SUPERFAMILY SSF64518 1 273 1.02E-91 T 11-11-2016 Gferi_RS27010 fdf118459d9405f13d3fea5ce53b51d4 344 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 18 344 1.6E-18 T 11-11-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Gferi_RS27010 fdf118459d9405f13d3fea5ce53b51d4 344 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 20 330 1.4E-38 T 11-11-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Gferi_RS14070 2945aeceb9378d22abfc228891a909ce 152 SUPERFAMILY SSF52218 1 150 3.39E-23 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS14070 2945aeceb9378d22abfc228891a909ce 152 Pfam PF12641 Flavodoxin domain 4 112 1.6E-11 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Gferi_RS14070 2945aeceb9378d22abfc228891a909ce 152 Gene3D G3DSA:3.40.50.360 1 149 1.4E-18 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS22030 4cea664a8ac1956916d31f8bfba373c0 506 SUPERFAMILY SSF140683 433 503 4.71E-12 T 11-11-2016 Gferi_RS22030 4cea664a8ac1956916d31f8bfba373c0 506 SUPERFAMILY SSF55785 290 393 2.66E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS22030 4cea664a8ac1956916d31f8bfba373c0 506 Pfam PF13596 PAS domain 293 398 6.8E-27 T 11-11-2016 Gferi_RS22030 4cea664a8ac1956916d31f8bfba373c0 506 Pfam PF08984 Domain of unknown function (DUF1858) 435 495 4.0E-14 T 11-11-2016 IPR015077 Domain of unknown function DUF1858 Gferi_RS22030 4cea664a8ac1956916d31f8bfba373c0 506 Pfam PF01814 Hemerythrin HHE cation binding domain 91 211 1.8E-13 T 11-11-2016 IPR012312 Haemerythrin-like Reactome: R-HSA-390471 Gferi_RS22030 4cea664a8ac1956916d31f8bfba373c0 506 Gene3D G3DSA:1.20.120.520 87 299 2.6E-52 T 11-11-2016 Gferi_RS22030 4cea664a8ac1956916d31f8bfba373c0 506 Gene3D G3DSA:1.10.3910.10 435 499 7.4E-10 T 11-11-2016 IPR015077 Domain of unknown function DUF1858 Gferi_RS22030 4cea664a8ac1956916d31f8bfba373c0 506 Gene3D G3DSA:3.30.450.20 300 398 7.0E-7 T 11-11-2016 Gferi_RS26905 bb0ba61d7618535c50535cccb70906be 198 Pfam PF03956 Membrane protein of unknown function (DUF340) 7 194 5.9E-56 T 11-11-2016 IPR005642 Lysine exporter LysO Gferi_RS26905 bb0ba61d7618535c50535cccb70906be 198 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 39 180 9.0E-27 T 11-11-2016 IPR005642 Lysine exporter LysO Gferi_RS20375 d6ef4087230eedc2d386a77bbc7d5705 145 Pfam PF12802 MarR family 30 87 6.8E-10 T 11-11-2016 Gferi_RS20375 d6ef4087230eedc2d386a77bbc7d5705 145 SUPERFAMILY SSF46785 4 138 1.9E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20375 d6ef4087230eedc2d386a77bbc7d5705 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 5.6E-6 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS20375 d6ef4087230eedc2d386a77bbc7d5705 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 5.6E-6 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS20375 d6ef4087230eedc2d386a77bbc7d5705 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 5.6E-6 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS20375 d6ef4087230eedc2d386a77bbc7d5705 145 Gene3D G3DSA:1.10.10.10 2 140 1.6E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20375 d6ef4087230eedc2d386a77bbc7d5705 145 SMART SM00347 24 124 4.7E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS04650 913d1a41eb2d048a77d754faf6420edd 272 SMART SM00283 80 269 1.7E-4 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS04650 913d1a41eb2d048a77d754faf6420edd 272 SUPERFAMILY SSF58104 104 269 4.19E-40 T 11-11-2016 Gferi_RS04650 913d1a41eb2d048a77d754faf6420edd 272 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 148 267 6.0E-25 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS04650 913d1a41eb2d048a77d754faf6420edd 272 Gene3D G3DSA:1.10.287.950 106 268 1.4E-35 T 11-11-2016 Gferi_RS00715 f557d745fa2cbd55be295ef85859edcb 126 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 114 1.7E-33 T 11-11-2016 IPR000238 Ribosome-binding factor A GO:0006364 Gferi_RS00715 f557d745fa2cbd55be295ef85859edcb 126 SUPERFAMILY SSF89919 3 112 5.63E-31 T 11-11-2016 IPR023799 Ribosome-binding factor A domain Gferi_RS00715 f557d745fa2cbd55be295ef85859edcb 126 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 1 116 22.798 T 11-11-2016 IPR000238 Ribosome-binding factor A GO:0006364 Gferi_RS00715 f557d745fa2cbd55be295ef85859edcb 126 Gene3D G3DSA:3.30.300.20 2 116 2.5E-37 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta Gferi_RS00715 f557d745fa2cbd55be295ef85859edcb 126 Pfam PF02033 Ribosome-binding factor A 5 109 1.5E-29 T 11-11-2016 IPR000238 Ribosome-binding factor A GO:0006364 Gferi_RS00715 f557d745fa2cbd55be295ef85859edcb 126 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 8 96 3.0E-30 T 11-11-2016 IPR000238 Ribosome-binding factor A GO:0006364 Gferi_RS21840 a649acaa6fdb3b4674bdfa35b694c995 528 Gene3D G3DSA:3.90.76.10 54 215 2.2E-40 T 11-11-2016 Gferi_RS21840 a649acaa6fdb3b4674bdfa35b694c995 528 SUPERFAMILY SSF53850 44 523 2.72E-134 T 11-11-2016 Gferi_RS21840 a649acaa6fdb3b4674bdfa35b694c995 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 87 444 6.8E-94 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS21840 a649acaa6fdb3b4674bdfa35b694c995 528 PIRSF PIRSF002741 1 525 4.9E-112 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS21840 a649acaa6fdb3b4674bdfa35b694c995 528 Gene3D G3DSA:3.10.105.10 284 498 2.0E-60 T 11-11-2016 Gferi_RS22575 ef516f2974c2060d8d86fbae89c3b1b9 655 Pfam PF02687 FtsX-like permease family 60 177 6.3E-16 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS22575 ef516f2974c2060d8d86fbae89c3b1b9 655 PIRSF PIRSF018968 1 655 2.7E-89 T 11-11-2016 IPR027022 ABC transporter permease protein, BceB-type GO:0006810 Gferi_RS10005 aeaad3d3635570284996d42f732bd7fb 347 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 338 6.8E-31 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS10005 aeaad3d3635570284996d42f732bd7fb 347 SUPERFAMILY SSF55326 6 170 2.69E-53 T 11-11-2016 Gferi_RS10005 aeaad3d3635570284996d42f732bd7fb 347 Gene3D G3DSA:3.30.1330.10 22 170 7.3E-64 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS10005 aeaad3d3635570284996d42f732bd7fb 347 Gene3D G3DSA:3.90.650.10 171 344 1.1E-68 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS10005 aeaad3d3635570284996d42f732bd7fb 347 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 6 347 47.572 T 11-11-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS10005 aeaad3d3635570284996d42f732bd7fb 347 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 164 1.7E-17 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS10005 aeaad3d3635570284996d42f732bd7fb 347 SUPERFAMILY SSF56042 171 343 9.72E-59 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS10005 aeaad3d3635570284996d42f732bd7fb 347 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 6 337 4.5E-137 T 11-11-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Gferi_RS02510 11cd0bdc71edbb41756c1df044c4835c 465 Pfam PF03553 Na+/H+ antiporter family 162 449 2.8E-30 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS08955 6362aaaf3ceb6b4c119a8c13ecbe5479 452 TIGRFAM TIGR00797 matE: MATE efflux family protein 18 423 7.5E-77 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS08955 6362aaaf3ceb6b4c119a8c13ecbe5479 452 PIRSF PIRSF006603 1 452 1.9E-102 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS08955 6362aaaf3ceb6b4c119a8c13ecbe5479 452 Pfam PF01554 MatE 18 183 1.9E-26 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS08955 6362aaaf3ceb6b4c119a8c13ecbe5479 452 Pfam PF01554 MatE 249 410 5.5E-32 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS25850 25b6704a1c753b02acd240109e6313dd 232 Gene3D G3DSA:3.20.20.70 1 231 9.7E-82 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS25850 25b6704a1c753b02acd240109e6313dd 232 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 231 5.8E-85 T 11-11-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Gferi_RS25850 25b6704a1c753b02acd240109e6313dd 232 Pfam PF00977 Histidine biosynthesis protein 3 227 6.6E-78 T 11-11-2016 IPR006062 Histidine biosynthesis GO:0000105 Gferi_RS25850 25b6704a1c753b02acd240109e6313dd 232 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 232 34.607 T 11-11-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Gferi_RS25850 25b6704a1c753b02acd240109e6313dd 232 SUPERFAMILY SSF51366 1 231 3.22E-70 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Gferi_RS13665 96a25fb2fe4ba545286153335ff9d603 109 Pfam PF12643 MazG-like family 11 97 3.8E-27 T 11-11-2016 IPR025984 MazG-like domain KEGG: 00240+3.6.1.12|Reactome: R-HSA-499943 Gferi_RS19630 d0121d6656c11db7310a079c735dfc28 179 Gene3D G3DSA:3.40.30.10 6 178 1.1E-69 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS19630 d0121d6656c11db7310a079c735dfc28 179 PIRSF PIRSF000239 1 179 2.4E-60 T 11-11-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Gferi_RS19630 d0121d6656c11db7310a079c735dfc28 179 SUPERFAMILY SSF52833 5 178 9.81E-63 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS19630 d0121d6656c11db7310a079c735dfc28 179 Pfam PF00578 AhpC/TSA family 6 140 1.4E-41 T 11-11-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Gferi_RS18410 03f38e50ff9b9ea20d0e4ec12c7143db 76 ProSitePatterns PS00195 Glutaredoxin active site. 7 23 - T 11-11-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 Gferi_RS18410 03f38e50ff9b9ea20d0e4ec12c7143db 76 SUPERFAMILY SSF52833 3 68 1.37E-17 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS18410 03f38e50ff9b9ea20d0e4ec12c7143db 76 Gene3D G3DSA:3.40.30.10 4 75 2.3E-22 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS18410 03f38e50ff9b9ea20d0e4ec12c7143db 76 Pfam PF00462 Glutaredoxin 5 63 3.5E-17 T 11-11-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Gferi_RS15085 8bcaeb8721b7a4a6d93b5ca899e5151a 414 Pfam PF01636 Phosphotransferase enzyme family 226 275 3.3E-8 T 11-11-2016 IPR002575 Aminoglycoside phosphotransferase Gferi_RS15085 8bcaeb8721b7a4a6d93b5ca899e5151a 414 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 37 404 5.2E-75 T 11-11-2016 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|KEGG: 00500+2.7.1.10|MetaCyc: PWY-6754 Gferi_RS15085 8bcaeb8721b7a4a6d93b5ca899e5151a 414 SUPERFAMILY SSF56112 30 400 2.38E-60 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS15085 8bcaeb8721b7a4a6d93b5ca899e5151a 414 Gene3D G3DSA:3.90.1200.10 187 347 1.8E-11 T 11-11-2016 Gferi_RS26200 d495a0dbdcf78f2f8d9f4911abeff0e9 147 Pfam PF13581 Histidine kinase-like ATPase domain 23 142 2.1E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26200 d495a0dbdcf78f2f8d9f4911abeff0e9 147 SUPERFAMILY SSF55874 40 143 4.22E-11 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26200 d495a0dbdcf78f2f8d9f4911abeff0e9 147 Gene3D G3DSA:3.30.565.10 26 145 1.8E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24540 9f73480e30c8678eec2e00609f6deeb8 221 SMART SM00862 145 216 1.7E-18 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS24540 9f73480e30c8678eec2e00609f6deeb8 221 SMART SM00448 3 113 7.4E-39 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS24540 9f73480e30c8678eec2e00609f6deeb8 221 Gene3D G3DSA:1.10.10.10 125 219 2.0E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24540 9f73480e30c8678eec2e00609f6deeb8 221 SUPERFAMILY SSF52172 3 166 8.54E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS24540 9f73480e30c8678eec2e00609f6deeb8 221 Gene3D G3DSA:3.40.50.2300 2 124 9.7E-40 T 11-11-2016 Gferi_RS24540 9f73480e30c8678eec2e00609f6deeb8 221 Pfam PF00072 Response regulator receiver domain 5 114 4.7E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS24540 9f73480e30c8678eec2e00609f6deeb8 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 2.8E-19 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS23990 1046a00558f6bdcfeb5c0f5655483184 75 SUPERFAMILY SSF47413 4 64 6.19E-15 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS23990 1046a00558f6bdcfeb5c0f5655483184 75 Gene3D G3DSA:1.10.260.40 4 65 4.8E-19 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS23990 1046a00558f6bdcfeb5c0f5655483184 75 SMART SM00530 6 62 9.2E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS23990 1046a00558f6bdcfeb5c0f5655483184 75 Pfam PF01381 Helix-turn-helix 7 62 1.5E-14 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS15540 b7942ea66e5a4a0d8a3679e011ccae76 159 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 14 136 3.5E-47 T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS15540 b7942ea66e5a4a0d8a3679e011ccae76 159 SUPERFAMILY SSF51261 3 142 1.31E-50 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS15540 b7942ea66e5a4a0d8a3679e011ccae76 159 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 15 134 7.1E-41 T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS15540 b7942ea66e5a4a0d8a3679e011ccae76 159 Gene3D G3DSA:2.70.70.10 4 153 1.5E-53 T 11-11-2016 Gferi_RS15540 b7942ea66e5a4a0d8a3679e011ccae76 159 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 76 88 - T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.7E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.7E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.7E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 Pfam PF00106 short chain dehydrogenase 4 194 2.4E-51 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.8E-24 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 4.8E-24 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 4.8E-24 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.8E-24 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 4.8E-24 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 PIRSF PIRSF000126 1 261 1.3E-67 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 SUPERFAMILY SSF51735 3 252 9.61E-59 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS23920 d5302dc7213476ac5522e9ad2d4594ad 261 Gene3D G3DSA:3.40.50.720 4 252 1.8E-58 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18195 fe3e78437231637c3264d63bbcc1d8a1 277 ProSitePatterns PS00801 Transketolase signature 1. 18 38 - T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS18195 fe3e78437231637c3264d63bbcc1d8a1 277 SUPERFAMILY SSF52518 8 268 1.02E-92 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS18195 fe3e78437231637c3264d63bbcc1d8a1 277 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 16 265 1.8E-58 T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS18195 fe3e78437231637c3264d63bbcc1d8a1 277 Gene3D G3DSA:3.40.50.970 5 273 3.8E-109 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS14000 e0ed882db8ddee9f58f8be45a8cad952 243 SUPERFAMILY SSF52540 89 225 1.01E-27 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14000 e0ed882db8ddee9f58f8be45a8cad952 243 Gene3D G3DSA:3.40.50.300 90 224 1.1E-27 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14000 e0ed882db8ddee9f58f8be45a8cad952 243 Pfam PF01695 IstB-like ATP binding protein 53 225 1.7E-59 T 11-11-2016 IPR002611 IstB-like ATP-binding protein GO:0005524 Gferi_RS14000 e0ed882db8ddee9f58f8be45a8cad952 243 SMART SM00382 94 226 4.8E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14000 e0ed882db8ddee9f58f8be45a8cad952 243 PIRSF PIRSF003073 15 243 1.6E-66 T 11-11-2016 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Gferi_RS20340 0bf485f2ef0941b95969289d84a12b78 1019 SUPERFAMILY SSF52540 20 56 1.41E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20340 0bf485f2ef0941b95969289d84a12b78 1019 SUPERFAMILY SSF52540 846 1000 1.41E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20340 0bf485f2ef0941b95969289d84a12b78 1019 SUPERFAMILY SSF52540 1 318 2.0E-25 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20340 0bf485f2ef0941b95969289d84a12b78 1019 Pfam PF13476 AAA domain 5 214 2.4E-32 T 11-11-2016 Gferi_RS20340 0bf485f2ef0941b95969289d84a12b78 1019 Gene3D G3DSA:3.40.50.300 892 1001 5.5E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20340 0bf485f2ef0941b95969289d84a12b78 1019 Gene3D G3DSA:3.40.50.300 1 168 3.4E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20340 0bf485f2ef0941b95969289d84a12b78 1019 Pfam PF13558 Putative exonuclease SbcCD, C subunit 912 976 1.4E-11 T 11-11-2016 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 Pfam PF00209 Sodium:neurotransmitter symporter family 125 483 9.0E-81 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 Pfam PF00209 Sodium:neurotransmitter symporter family 5 122 3.9E-34 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 SUPERFAMILY SSF161070 5 483 1.83E-146 T 11-11-2016 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 313 332 1.9E-32 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 430 450 1.9E-32 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 86 112 1.9E-32 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 390 410 1.9E-32 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 1.9E-32 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS00195 e2976680305de31cd79b34c1a94bb57d 502 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 1.9E-32 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 198 1.8E-19 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 SMART SM00448 1 114 9.3E-18 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 3.5E-13 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 3.5E-13 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 3.5E-13 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 ProSitePatterns PS00622 LuxR-type HTH domain signature. 158 185 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 SUPERFAMILY SSF52172 1 130 1.85E-24 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 Gene3D G3DSA:3.40.50.2300 1 142 6.8E-29 T 11-11-2016 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 Gene3D G3DSA:1.10.10.10 143 200 5.9E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 SMART SM00421 141 198 3.8E-24 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 SUPERFAMILY SSF46894 129 200 6.8E-21 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS11625 03782bac9b5384a660129e4c1bc9d38b 204 Pfam PF00072 Response regulator receiver domain 3 114 4.3E-20 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS02250 0fff7077532a2427874969dd828da112 353 Gene3D G3DSA:3.50.90.10 53 349 3.0E-102 T 11-11-2016 IPR023158 YerB-like domain Gferi_RS02250 0fff7077532a2427874969dd828da112 353 Pfam PF11258 Protein of unknown function (DUF3048) 65 341 4.0E-91 T 11-11-2016 IPR021416 Protein of unknown function DUF3048 Gferi_RS02250 0fff7077532a2427874969dd828da112 353 SUPERFAMILY SSF159774 60 347 1.09E-89 T 11-11-2016 IPR023158 YerB-like domain Gferi_RS04735 58328350b75dd100f26ad2e7cb327c40 177 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 166 2.6E-20 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04735 58328350b75dd100f26ad2e7cb327c40 177 SUPERFAMILY SSF88659 105 167 1.7E-12 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04735 58328350b75dd100f26ad2e7cb327c40 177 Pfam PF04542 Sigma-70 region 2 20 84 3.1E-11 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04735 58328350b75dd100f26ad2e7cb327c40 177 SUPERFAMILY SSF88946 6 99 1.41E-21 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS04735 58328350b75dd100f26ad2e7cb327c40 177 Gene3D G3DSA:1.10.10.10 106 167 5.3E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04735 58328350b75dd100f26ad2e7cb327c40 177 Gene3D G3DSA:1.10.1740.10 2 86 3.3E-22 T 11-11-2016 Gferi_RS04735 58328350b75dd100f26ad2e7cb327c40 177 Pfam PF08281 Sigma-70, region 4 111 162 3.0E-13 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS16340 1825ad027886a516b0a6426b5754a221 206 SUPERFAMILY SSF47644 3 79 4.18E-15 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16340 1825ad027886a516b0a6426b5754a221 206 Pfam PF02607 B12 binding domain 4 68 2.2E-10 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16340 1825ad027886a516b0a6426b5754a221 206 Pfam PF02310 B12 binding domain 87 198 3.6E-19 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16340 1825ad027886a516b0a6426b5754a221 206 SMART SM01018 1 81 2.0E-15 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16340 1825ad027886a516b0a6426b5754a221 206 Gene3D G3DSA:1.10.1240.10 3 75 1.8E-12 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16340 1825ad027886a516b0a6426b5754a221 206 SUPERFAMILY SSF52242 71 206 6.41E-37 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16340 1825ad027886a516b0a6426b5754a221 206 Gene3D G3DSA:3.40.50.280 76 206 5.4E-42 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS21350 acd5155094bd658e0023d0228c1854ce 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.3E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21350 acd5155094bd658e0023d0228c1854ce 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.3E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21350 acd5155094bd658e0023d0228c1854ce 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 60 1.2E-16 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21350 acd5155094bd658e0023d0228c1854ce 197 SUPERFAMILY SSF46689 4 78 5.49E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21350 acd5155094bd658e0023d0228c1854ce 197 Gene3D G3DSA:1.10.357.10 8 184 2.9E-28 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS02060 bbd855871a41cc32f7fee6b466670c42 190 Pfam PF03358 NADPH-dependent FMN reductase 2 110 4.9E-22 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS02060 bbd855871a41cc32f7fee6b466670c42 190 Gene3D G3DSA:3.40.50.360 2 187 1.9E-35 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS02060 bbd855871a41cc32f7fee6b466670c42 190 SUPERFAMILY SSF52218 2 187 6.06E-35 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS07700 e0f327a71068b30e780ebdd902fa0391 63 Pfam PF01797 Transposase IS200 like 13 61 4.4E-7 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS07700 e0f327a71068b30e780ebdd902fa0391 63 SUPERFAMILY SSF143422 8 61 1.83E-10 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS07700 e0f327a71068b30e780ebdd902fa0391 63 Gene3D G3DSA:3.30.70.1290 5 61 8.6E-5 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS14040 79ca540b8f9e342fdb7c73f28715e9e4 189 Gene3D G3DSA:1.10.10.10 3 84 1.2E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14040 79ca540b8f9e342fdb7c73f28715e9e4 189 SUPERFAMILY SSF46785 3 166 1.71E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14040 79ca540b8f9e342fdb7c73f28715e9e4 189 Pfam PF03551 Transcriptional regulator PadR-like family 6 79 1.5E-13 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS20275 fff61fb51e0468300fc410cb2b70b350 379 SUPERFAMILY SSF109604 136 301 1.18E-30 T 11-11-2016 Gferi_RS20275 fff61fb51e0468300fc410cb2b70b350 379 Gene3D G3DSA:1.10.3210.10 136 300 1.2E-17 T 11-11-2016 IPR006674 HD domain Gferi_RS20275 fff61fb51e0468300fc410cb2b70b350 379 Pfam PF01966 HD domain 143 262 2.5E-13 T 11-11-2016 IPR006674 HD domain Gferi_RS20275 fff61fb51e0468300fc410cb2b70b350 379 SMART SM00471 138 273 4.7E-6 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS14690 41559b41566c52f4df88ea42afc3549a 359 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 353 6.3E-161 T 11-11-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Gferi_RS14690 41559b41566c52f4df88ea42afc3549a 359 PIRSF PIRSF016049 1 359 9.0E-125 T 11-11-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Gferi_RS14690 41559b41566c52f4df88ea42afc3549a 359 Gene3D G3DSA:3.20.20.150 1 357 9.4E-151 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS14690 41559b41566c52f4df88ea42afc3549a 359 SUPERFAMILY SSF51658 1 353 1.46E-94 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS14690 41559b41566c52f4df88ea42afc3549a 359 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 155 358 1.5E-70 T 11-11-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Gferi_RS14690 41559b41566c52f4df88ea42afc3549a 359 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 359 174.384 T 11-11-2016 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 Gferi_RS19255 3c3b20ab482d7f6a96fa898a6c02b214 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 284 1.2E-7 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19255 3c3b20ab482d7f6a96fa898a6c02b214 296 SUPERFAMILY SSF161098 54 282 1.24E-36 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19255 3c3b20ab482d7f6a96fa898a6c02b214 296 Gene3D G3DSA:1.10.3720.10 6 283 2.0E-39 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09815 a521eeb90bcf33f41570c1028b40e696 289 TIGRFAM TIGR03659 IsdE: heme ABC transporter, heme-binding protein isdE 3 286 1.0E-111 T 11-11-2016 IPR019957 ABC transporter, high-affinity heme uptake system protein IsdE GO:0015886|GO:0016020|GO:0020037 Gferi_RS09815 a521eeb90bcf33f41570c1028b40e696 289 Pfam PF01497 Periplasmic binding protein 36 263 2.5E-28 T 11-11-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 Gferi_RS09815 a521eeb90bcf33f41570c1028b40e696 289 Gene3D G3DSA:3.40.50.1980 35 145 1.5E-16 T 11-11-2016 Gferi_RS09815 a521eeb90bcf33f41570c1028b40e696 289 Gene3D G3DSA:3.40.50.1980 146 286 5.3E-29 T 11-11-2016 Gferi_RS09815 a521eeb90bcf33f41570c1028b40e696 289 SUPERFAMILY SSF53807 35 287 8.83E-49 T 11-11-2016 Gferi_RS06565 575663dfe819245b519bd7050c7c5511 200 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 4 197 8.8E-46 T 11-11-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Gferi_RS06565 575663dfe819245b519bd7050c7c5511 200 SUPERFAMILY SSF51366 2 198 7.85E-53 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Gferi_RS06565 575663dfe819245b519bd7050c7c5511 200 Gene3D G3DSA:3.20.20.70 2 199 3.8E-66 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS06565 575663dfe819245b519bd7050c7c5511 200 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 2 200 36.533 T 11-11-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 Gferi_RS19965 0689ea4cb0386ed728b7e4c3acccf1ee 232 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 231 2.0E-102 T 11-11-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 Gferi_RS19965 0689ea4cb0386ed728b7e4c3acccf1ee 232 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 232 45.919 T 11-11-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 Gferi_RS19965 0689ea4cb0386ed728b7e4c3acccf1ee 232 Gene3D G3DSA:3.40.50.1580 8 231 2.1E-82 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS19965 0689ea4cb0386ed728b7e4c3acccf1ee 232 Pfam PF01048 Phosphorylase superfamily 16 223 2.0E-41 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS19965 0689ea4cb0386ed728b7e4c3acccf1ee 232 SUPERFAMILY SSF53167 2 231 1.96E-93 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS19965 0689ea4cb0386ed728b7e4c3acccf1ee 232 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 11-11-2016 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 Gene3D G3DSA:1.10.10.60 410 468 1.0E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 SUPERFAMILY SSF46689 415 466 1.16E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 469 511 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 Gene3D G3DSA:1.10.10.60 469 514 1.8E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 SUPERFAMILY SSF52172 1 152 1.57E-35 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 484 499 7.1E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 499 515 7.1E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 SUPERFAMILY SSF46689 468 516 3.36E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 SMART SM00342 432 515 1.4E-32 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 Pfam PF00072 Response regulator receiver domain 5 116 2.0E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 Pfam PF12833 Helix-turn-helix domain 439 516 4.3E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 Gene3D G3DSA:3.40.50.2300 1 134 1.3E-34 T 11-11-2016 Gferi_RS17900 e8978c32d3fbfabe3b27a1207030ddcc 517 SMART SM00448 2 117 4.3E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07990 8bd328679f4395c921e402f8a7c6499f 211 SUPERFAMILY SSF51161 43 203 2.63E-46 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS07990 8bd328679f4395c921e402f8a7c6499f 211 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 125 153 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Gferi_RS07990 8bd328679f4395c921e402f8a7c6499f 211 Gene3D G3DSA:2.160.10.10 11 203 2.6E-51 T 11-11-2016 Gferi_RS07990 8bd328679f4395c921e402f8a7c6499f 211 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 116 149 1.9E-10 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS18840 756df620c58398c4c6d46816d350d573 248 Gene3D G3DSA:3.40.50.970 14 229 2.3E-59 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS18840 756df620c58398c4c6d46816d350d573 248 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 51 208 1.8E-22 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS18840 756df620c58398c4c6d46816d350d573 248 SUPERFAMILY SSF52518 14 242 4.99E-58 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS20810 800e85bf401975362e0ab115867f0982 237 Pfam PF00005 ABC transporter 22 158 2.2E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS20810 800e85bf401975362e0ab115867f0982 237 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS20810 800e85bf401975362e0ab115867f0982 237 SMART SM00382 27 215 7.0E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20810 800e85bf401975362e0ab115867f0982 237 SUPERFAMILY SSF52540 3 229 5.66E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20810 800e85bf401975362e0ab115867f0982 237 Gene3D G3DSA:3.40.50.300 3 231 4.1E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16120 a8f98b2a1de4ef8fa491020d1b36e31b 247 Pfam PF13500 AAA domain 4 211 3.7E-47 T 11-11-2016 Gferi_RS16120 a8f98b2a1de4ef8fa491020d1b36e31b 247 Gene3D G3DSA:3.40.50.300 1 212 1.3E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16120 a8f98b2a1de4ef8fa491020d1b36e31b 247 PIRSF PIRSF006755 1 229 4.5E-66 T 11-11-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Gferi_RS16120 a8f98b2a1de4ef8fa491020d1b36e31b 247 SUPERFAMILY SSF52540 1 213 3.35E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16120 a8f98b2a1de4ef8fa491020d1b36e31b 247 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 177 2.1E-47 T 11-11-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Gferi_RS16120 a8f98b2a1de4ef8fa491020d1b36e31b 247 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 213 27.907 T 11-11-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 Gferi_RS12400 75ad20d360e3267eae2058e96c2b37ce 141 SUPERFAMILY SSF53062 1 135 5.89E-35 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS12400 75ad20d360e3267eae2058e96c2b37ce 141 Gene3D G3DSA:3.40.50.510 1 137 3.4E-38 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS12400 75ad20d360e3267eae2058e96c2b37ce 141 Pfam PF03610 PTS system fructose IIA component 4 117 9.9E-27 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS22995 d4243eded0f08d4fd48495f3e6125dbe 313 Gene3D G3DSA:3.20.20.140 2 312 1.0E-105 T 11-11-2016 Gferi_RS22995 d4243eded0f08d4fd48495f3e6125dbe 313 SUPERFAMILY SSF51556 1 312 1.7E-80 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS22995 d4243eded0f08d4fd48495f3e6125dbe 313 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 3 309 2.2E-96 T 11-11-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 Gferi_RS26235 2accd83e03d095bc4ca250f6dee3ed40 200 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 3 196 27.497 T 11-11-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 Gferi_RS26235 2accd83e03d095bc4ca250f6dee3ed40 200 PIRSF PIRSF006102 1 200 1.7E-74 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Gferi_RS26235 2accd83e03d095bc4ca250f6dee3ed40 200 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 185 4.2E-69 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Gferi_RS26235 2accd83e03d095bc4ca250f6dee3ed40 200 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 5 193 4.7E-82 T 11-11-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 Gferi_RS17925 a7561955f771e1bd592351517cfee4c2 376 SUPERFAMILY SSF51726 99 365 7.32E-17 T 11-11-2016 Gferi_RS17925 a7561955f771e1bd592351517cfee4c2 376 Gene3D G3DSA:3.20.20.210 99 295 7.3E-16 T 11-11-2016 Gferi_RS17925 a7561955f771e1bd592351517cfee4c2 376 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 100 361 3.6E-16 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS26650 b8232199789890ca24b05d369781008a 167 Gene3D G3DSA:2.160.10.10 4 166 9.0E-49 T 11-11-2016 Gferi_RS26650 b8232199789890ca24b05d369781008a 167 SUPERFAMILY SSF51161 5 165 3.6E-48 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS26650 b8232199789890ca24b05d369781008a 167 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 120 1.9E-8 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS26380 8dd0ef451bb4f6f22bc0d9f495da2cc2 98 Pfam PF01985 CRS1 / YhbY (CRM) domain 2 85 5.3E-21 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 Gferi_RS26380 8dd0ef451bb4f6f22bc0d9f495da2cc2 98 Gene3D G3DSA:3.30.110.60 2 95 1.8E-29 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 Gferi_RS26380 8dd0ef451bb4f6f22bc0d9f495da2cc2 98 SMART SM01103 2 85 2.5E-35 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 Gferi_RS26380 8dd0ef451bb4f6f22bc0d9f495da2cc2 98 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 96 2.0E-25 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 Gferi_RS26380 8dd0ef451bb4f6f22bc0d9f495da2cc2 98 SUPERFAMILY SSF75471 2 94 2.49E-28 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 Gferi_RS26380 8dd0ef451bb4f6f22bc0d9f495da2cc2 98 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 2 97 1.4E-25 T 11-11-2016 IPR017924 RNA-binding protein YhbY GO:0003723 Gferi_RS14695 1ddfeb644709b1fb3da0034072408054 343 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 51 294 1.8E-70 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS14695 1ddfeb644709b1fb3da0034072408054 343 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 49 325 6.5E-82 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS14695 1ddfeb644709b1fb3da0034072408054 343 PIRSF PIRSF006470 12 343 1.6E-78 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS20500 c0d671faa3805e03a12530c90336b0fd 498 Pfam PF01943 Polysaccharide biosynthesis protein 12 287 1.4E-14 T 11-11-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Gferi_RS20500 c0d671faa3805e03a12530c90336b0fd 498 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 340 475 2.2E-19 T 11-11-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Gferi_RS10990 fde04cc81dc29ee58d24037b60a56440 266 Gene3D G3DSA:3.90.260.10 123 243 2.9E-13 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS10990 fde04cc81dc29ee58d24037b60a56440 266 SMART SM00460 182 240 2.1E-16 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS10990 fde04cc81dc29ee58d24037b60a56440 266 Pfam PF01841 Transglutaminase-like superfamily 134 237 4.6E-23 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS10990 fde04cc81dc29ee58d24037b60a56440 266 SUPERFAMILY SSF54001 104 243 3.83E-31 T 11-11-2016 Gferi_RS08215 b4be2d20ec8f424c112525e04888de30 1139 SUPERFAMILY SSF63829 817 1044 3.05E-9 T 11-11-2016 Gferi_RS08215 b4be2d20ec8f424c112525e04888de30 1139 Pfam PF07494 Two component regulator propeller 813 835 0.012 T 11-11-2016 IPR011110 Two component regulator propeller Gferi_RS08215 b4be2d20ec8f424c112525e04888de30 1139 Gene3D G3DSA:2.120.10.30 909 1030 1.4E-11 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS08215 b4be2d20ec8f424c112525e04888de30 1139 Gene3D G3DSA:2.120.10.30 1085 1130 1.4E-11 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS08215 b4be2d20ec8f424c112525e04888de30 1139 Gene3D G3DSA:2.120.10.30 818 860 1.4E-11 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS08215 b4be2d20ec8f424c112525e04888de30 1139 SUPERFAMILY SSF56524 381 476 1.65E-5 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08215 b4be2d20ec8f424c112525e04888de30 1139 SUPERFAMILY SSF56524 622 768 3.53E-6 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS01750 485f96a13b5407a3053ba03ae3721840 594 Gene3D G3DSA:3.40.970.40 266 307 9.1E-5 T 11-11-2016 Gferi_RS01750 485f96a13b5407a3053ba03ae3721840 594 Gene3D G3DSA:2.30.310.10 1 167 1.9E-59 T 11-11-2016 Gferi_RS01750 485f96a13b5407a3053ba03ae3721840 594 Gene3D G3DSA:1.10.8.50 168 248 8.5E-14 T 11-11-2016 Gferi_RS01750 485f96a13b5407a3053ba03ae3721840 594 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 4 463 5.7E-153 T 11-11-2016 Gferi_RS01750 485f96a13b5407a3053ba03ae3721840 594 SUPERFAMILY SSF46946 173 243 7.72E-6 T 11-11-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Gferi_RS01750 485f96a13b5407a3053ba03ae3721840 594 Pfam PF05670 Domain of unknown function (DUF814) 472 559 2.4E-31 T 11-11-2016 IPR008532 Domain of unknown function DUF814 Gferi_RS02395 1163c6aad7ab0052e133f50cca4874ce 344 Gene3D G3DSA:1.20.272.20 225 330 3.6E-6 T 11-11-2016 Gferi_RS02395 1163c6aad7ab0052e133f50cca4874ce 344 SUPERFAMILY SSF48019 224 341 1.02E-22 T 11-11-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Gferi_RS02395 1163c6aad7ab0052e133f50cca4874ce 344 Gene3D G3DSA:3.40.50.300 4 141 2.8E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02395 1163c6aad7ab0052e133f50cca4874ce 344 SUPERFAMILY SSF52540 7 214 1.63E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02395 1163c6aad7ab0052e133f50cca4874ce 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 342 6.2E-64 T 11-11-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 Gferi_RS02395 1163c6aad7ab0052e133f50cca4874ce 344 Pfam PF06144 DNA polymerase III, delta subunit 19 180 9.6E-37 T 11-11-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 Gferi_RS13080 4b9b564d4e66b0a92f5f8b9a954bd583 89 Gene3D G3DSA:3.30.1340.10 1 87 1.4E-28 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13080 4b9b564d4e66b0a92f5f8b9a954bd583 89 SUPERFAMILY SSF55594 1 87 4.32E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13080 4b9b564d4e66b0a92f5f8b9a954bd583 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 5.9E-16 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13080 4b9b564d4e66b0a92f5f8b9a954bd583 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 5.9E-16 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13080 4b9b564d4e66b0a92f5f8b9a954bd583 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 5.9E-16 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13080 4b9b564d4e66b0a92f5f8b9a954bd583 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 3.0E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13080 4b9b564d4e66b0a92f5f8b9a954bd583 89 Pfam PF00381 PTS HPr component phosphorylation site 4 82 9.1E-25 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS13315 29f5ecbb4eca0b6f2522997e8ad4942b 257 Pfam PF13614 AAA domain 2 177 8.2E-72 T 11-11-2016 IPR025669 AAA domain Gferi_RS13315 29f5ecbb4eca0b6f2522997e8ad4942b 257 Gene3D G3DSA:3.40.50.300 3 253 1.6E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13315 29f5ecbb4eca0b6f2522997e8ad4942b 257 SUPERFAMILY SSF52540 2 253 8.73E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21705 791c5b726ee88b2dac551119f793b56f 375 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 100 330 3.0E-29 T 11-11-2016 IPR005079 Peptidase C45 Gferi_RS21705 791c5b726ee88b2dac551119f793b56f 375 SUPERFAMILY SSF56235 97 229 7.72E-13 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS21705 791c5b726ee88b2dac551119f793b56f 375 Gene3D G3DSA:3.60.60.10 88 343 1.3E-21 T 11-11-2016 IPR003199 Choloylglycine hydrolase/Peptidase C59 family GO:0016811 Reactome: R-HSA-1660662 Gferi_RS14005 86b0ff4d200f61a045dafbd8492e06c5 274 SMART SM00849 18 205 1.0E-12 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS14005 86b0ff4d200f61a045dafbd8492e06c5 274 SUPERFAMILY SSF56281 17 236 7.99E-32 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS14005 86b0ff4d200f61a045dafbd8492e06c5 274 Pfam PF00753 Metallo-beta-lactamase superfamily 16 167 6.2E-7 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS14005 86b0ff4d200f61a045dafbd8492e06c5 274 Gene3D G3DSA:3.60.15.10 10 225 3.3E-29 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS04965 1b330d1c5bf47ea28bb8e8380f35cb45 198 Pfam PF01965 DJ-1/PfpI family 6 175 2.8E-29 T 11-11-2016 IPR002818 DJ-1/PfpI Gferi_RS04965 1b330d1c5bf47ea28bb8e8380f35cb45 198 Gene3D G3DSA:3.40.50.880 6 195 1.3E-57 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS04965 1b330d1c5bf47ea28bb8e8380f35cb45 198 SUPERFAMILY SSF52317 6 195 5.66E-51 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS01435 07a17a03560833629f36b47bcff247d2 183 SMART SM00530 6 60 4.1E-9 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS01435 07a17a03560833629f36b47bcff247d2 183 SUPERFAMILY SSF47413 1 54 2.95E-11 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01435 07a17a03560833629f36b47bcff247d2 183 Pfam PF13560 Helix-turn-helix domain 3 54 4.8E-9 T 11-11-2016 Gferi_RS01435 07a17a03560833629f36b47bcff247d2 183 Gene3D G3DSA:1.10.260.40 3 54 3.1E-12 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS26420 2b4dcf5e807cd13bc6e1acd73c70e3e8 127 Pfam PF01042 Endoribonuclease L-PSP 8 125 7.2E-46 T 11-11-2016 IPR006175 YjgF/YER057c/UK114 family Gferi_RS26420 2b4dcf5e807cd13bc6e1acd73c70e3e8 127 Gene3D G3DSA:3.30.1330.40 3 125 4.6E-53 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Gferi_RS26420 2b4dcf5e807cd13bc6e1acd73c70e3e8 127 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 102 120 - T 11-11-2016 IPR019897 RidA, conserved site Gferi_RS26420 2b4dcf5e807cd13bc6e1acd73c70e3e8 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 125 7.2E-55 T 11-11-2016 IPR006056 RidA family Gferi_RS26420 2b4dcf5e807cd13bc6e1acd73c70e3e8 127 SUPERFAMILY SSF55298 2 126 1.43E-49 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Gferi_RS20735 d657d5b41732bfa901bd4a4eef65c892 410 TIGRFAM TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF 3 397 4.7E-171 T 11-11-2016 IPR023873 [FeFe]-hydrogenase H-cluster maturation GTPase HydF Gferi_RS20735 d657d5b41732bfa901bd4a4eef65c892 410 SUPERFAMILY SSF52540 10 170 2.2E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20735 d657d5b41732bfa901bd4a4eef65c892 410 Pfam PF01926 50S ribosome-binding GTPase 11 126 2.9E-21 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS20735 d657d5b41732bfa901bd4a4eef65c892 410 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 163 7.7E-23 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS20735 d657d5b41732bfa901bd4a4eef65c892 410 SMART SM00173 7 173 0.0033 T 11-11-2016 Gferi_RS20735 d657d5b41732bfa901bd4a4eef65c892 410 Gene3D G3DSA:3.40.50.300 3 166 7.2E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04510 15724188f2801436cf5c6b69fdc6bd6b 280 Pfam PF04055 Radical SAM superfamily 24 211 1.6E-23 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS04510 15724188f2801436cf5c6b69fdc6bd6b 280 Gene3D G3DSA:3.80.30.10 105 278 1.5E-54 T 11-11-2016 Gferi_RS04510 15724188f2801436cf5c6b69fdc6bd6b 280 SUPERFAMILY SSF102114 71 242 1.92E-18 T 11-11-2016 Gferi_RS04510 15724188f2801436cf5c6b69fdc6bd6b 280 ProSitePatterns PS01087 Radical activating enzymes signature. 17 38 - T 11-11-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 Gferi_RS04510 15724188f2801436cf5c6b69fdc6bd6b 280 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 61 271 1.4E-57 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS04510 15724188f2801436cf5c6b69fdc6bd6b 280 Pfam PF13353 4Fe-4S single cluster domain 16 151 2.2E-13 T 11-11-2016 Gferi_RS14540 6aa8a24d70fb22312f89fc29b751a1d6 176 Pfam PF06810 Phage minor structural protein GP20 23 152 8.1E-23 T 11-11-2016 IPR009636 Capsid assembly scaffolding protein GO:0005198 Gferi_RS16800 f2a9edebc3e8d4d84b1aa4eb0c85add8 146 Gene3D G3DSA:2.40.50.140 3 78 6.1E-27 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS16800 f2a9edebc3e8d4d84b1aa4eb0c85add8 146 SMART SM00316 4 74 4.8E-26 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS16800 f2a9edebc3e8d4d84b1aa4eb0c85add8 146 Pfam PF00575 S1 RNA binding domain 4 74 5.4E-19 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS16800 f2a9edebc3e8d4d84b1aa4eb0c85add8 146 SUPERFAMILY SSF50249 4 81 2.47E-24 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS15095 6d6f14f83290dde915a6ae35ab2e2753 358 Gene3D G3DSA:3.40.350.10 1 129 1.8E-16 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS15095 6d6f14f83290dde915a6ae35ab2e2753 358 SUPERFAMILY SSF53092 3 129 5.58E-12 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal Gferi_RS15095 6d6f14f83290dde915a6ae35ab2e2753 358 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 287 299 - T 11-11-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site Gferi_RS15095 6d6f14f83290dde915a6ae35ab2e2753 358 SUPERFAMILY SSF55920 131 357 4.06E-72 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS15095 6d6f14f83290dde915a6ae35ab2e2753 358 Gene3D G3DSA:3.90.230.10 131 357 7.1E-82 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS15095 6d6f14f83290dde915a6ae35ab2e2753 358 Pfam PF01321 Creatinase/Prolidase N-terminal domain 5 131 1.9E-15 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS15095 6d6f14f83290dde915a6ae35ab2e2753 358 Pfam PF00557 Metallopeptidase family M24 139 341 1.3E-62 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS17625 795560c5f7f705408351adcaeec81762 238 SUPERFAMILY SSF53187 43 232 4.19E-53 T 11-11-2016 Gferi_RS17625 795560c5f7f705408351adcaeec81762 238 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 44 227 4.4E-49 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS17625 795560c5f7f705408351adcaeec81762 238 SMART SM00646 116 228 7.5E-27 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS17625 795560c5f7f705408351adcaeec81762 238 TIGRFAM TIGR02883 spore_cwlD: N-acetylmuramoyl-L-alanine amidase CwlD 42 230 6.7E-76 T 11-11-2016 IPR014234 N-acetylmuramoyl-L-alanine amidase CwlD Gferi_RS17625 795560c5f7f705408351adcaeec81762 238 Gene3D G3DSA:3.40.630.40 42 232 1.0E-55 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 Pfam PF00009 Elongation factor Tu GTP binding domain 16 202 2.4E-45 T 11-11-2016 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 SUPERFAMILY SSF50465 323 424 1.04E-16 T 11-11-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 SUPERFAMILY SSF52540 16 244 3.14E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 70 85 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 Gene3D G3DSA:2.40.30.10 229 347 9.8E-19 T 11-11-2016 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 PRINTS PR00315 GTP-binding elongation factor signature 150 159 2.3E-18 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 PRINTS PR00315 GTP-binding elongation factor signature 97 107 2.3E-18 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 PRINTS PR00315 GTP-binding elongation factor signature 19 32 2.3E-18 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 PRINTS PR00315 GTP-binding elongation factor signature 77 85 2.3E-18 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 PRINTS PR00315 GTP-binding elongation factor signature 113 124 2.3E-18 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 20 415 2.3E-105 T 11-11-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 SUPERFAMILY SSF50447 229 315 2.21E-14 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 17 204 1.3E-13 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 Gene3D G3DSA:2.40.30.10 348 424 1.6E-4 T 11-11-2016 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 Pfam PF01583 Adenylylsulphate kinase 463 543 8.2E-8 T 11-11-2016 Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 Gene3D G3DSA:3.40.50.300 441 564 7.2E-16 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06085 7acc7d000765e8f9098a7669c34bc1e3 612 Gene3D G3DSA:3.40.50.300 5 217 1.8E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16235 13f09bfdfa157c1c6e948edf86a3af35 496 SUPERFAMILY SSF161070 10 477 4.45E-107 T 11-11-2016 Gferi_RS16235 13f09bfdfa157c1c6e948edf86a3af35 496 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 46 65 4.1E-11 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS16235 13f09bfdfa157c1c6e948edf86a3af35 496 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 17 38 4.1E-11 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS16235 13f09bfdfa157c1c6e948edf86a3af35 496 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 91 117 4.1E-11 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS16235 13f09bfdfa157c1c6e948edf86a3af35 496 Pfam PF00209 Sodium:neurotransmitter symporter family 153 473 7.4E-30 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS16235 13f09bfdfa157c1c6e948edf86a3af35 496 Pfam PF00209 Sodium:neurotransmitter symporter family 10 123 1.7E-24 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 Gene3D G3DSA:3.40.50.1000 8 25 1.7E-42 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 Gene3D G3DSA:3.40.50.1000 98 224 1.7E-42 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 192 6.3E-17 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 14 193 7.2E-37 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 Gene3D G3DSA:1.10.150.240 26 88 4.7E-9 T 11-11-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 11 22 3.6E-10 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 107 120 3.6E-10 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 156 176 3.6E-10 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 138 154 3.6E-10 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS07170 5fda5e4e307fe236dd608a86752dceb4 225 SUPERFAMILY SSF56784 11 223 5.42E-51 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS21650 2af8b4d01f4d9516b76fa003c9c87960 142 SUPERFAMILY SSF52980 2 137 1.09E-54 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Gferi_RS21650 2af8b4d01f4d9516b76fa003c9c87960 142 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 2 119 7.4E-43 T 11-11-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 Gferi_RS21650 2af8b4d01f4d9516b76fa003c9c87960 142 PIRSF PIRSF018267 1 141 2.0E-58 T 11-11-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 Gferi_RS21650 2af8b4d01f4d9516b76fa003c9c87960 142 Pfam PF03852 DNA mismatch endonuclease Vsr 2 72 5.3E-38 T 11-11-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 Gferi_RS21650 2af8b4d01f4d9516b76fa003c9c87960 142 Gene3D G3DSA:3.40.960.10 21 135 2.2E-49 T 11-11-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 SUPERFAMILY SSF47384 460 539 1.12E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 585 676 2.1E-6 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 SMART SM00387 584 693 1.5E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 SMART SM00388 473 538 9.4E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 Gene3D G3DSA:3.30.565.10 540 690 1.9E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 SMART SM00304 413 465 0.0018 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 Gene3D G3DSA:1.10.287.130 465 534 7.0E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 Pfam PF00512 His Kinase A (phospho-acceptor) domain 474 537 3.7E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS07715 80c4cc18266989796928f7d6f3297ea9 695 SUPERFAMILY SSF55874 542 677 8.75E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 Pfam PF00455 DeoR C terminal sensor domain 77 232 1.5E-56 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 SMART SM01134 73 233 3.2E-74 T 11-11-2016 Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 SUPERFAMILY SSF46785 4 59 2.25E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 5.1E-18 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.4E-11 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.4E-11 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 SUPERFAMILY SSF100950 75 233 6.11E-37 T 11-11-2016 Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-11-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 Gene3D G3DSA:1.10.10.10 5 62 3.6E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 SMART SM00420 6 58 8.1E-18 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04415 e91b3260d173a242786e690f880f63c5 251 Gene3D G3DSA:3.40.50.1360 76 215 2.5E-16 T 11-11-2016 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 TIGRFAM TIGR01027 proB: glutamate 5-kinase 10 266 2.2E-89 T 11-11-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 Hamap MF_00456 Glutamate 5-kinase [proB]. 10 263 34.733 T 11-11-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 SUPERFAMILY SSF53633 10 262 1.83E-64 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 PRINTS PR00474 Glutamate 5-kinase family signature 214 234 3.9E-47 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 PRINTS PR00474 Glutamate 5-kinase family signature 121 142 3.9E-47 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 PRINTS PR00474 Glutamate 5-kinase family signature 47 61 3.9E-47 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 PRINTS PR00474 Glutamate 5-kinase family signature 81 109 3.9E-47 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 PRINTS PR00474 Glutamate 5-kinase family signature 153 180 3.9E-47 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 Gene3D G3DSA:3.40.1160.10 7 262 1.8E-50 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 ProSitePatterns PS00902 Glutamate 5-kinase signature. 212 229 - T 11-11-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 Pfam PF00696 Amino acid kinase family 10 240 2.8E-44 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS00535 00b13bdb5d76cb047adcbd30bbd91258 277 PIRSF PIRSF000729 5 275 1.8E-94 T 11-11-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Gferi_RS09285 c02618abca3a97b92cfdb82abe07560b 247 Gene3D G3DSA:3.40.50.1580 2 242 1.4E-66 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS09285 c02618abca3a97b92cfdb82abe07560b 247 Pfam PF01048 Phosphorylase superfamily 16 198 6.7E-36 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS09285 c02618abca3a97b92cfdb82abe07560b 247 SUPERFAMILY SSF53167 2 242 2.23E-62 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Gferi_RS08520 cbd6a51c2e8e894b36b773337f068304 190 Pfam PF03358 NADPH-dependent FMN reductase 1 104 2.5E-11 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS08520 cbd6a51c2e8e894b36b773337f068304 190 SUPERFAMILY SSF52218 1 106 6.05E-20 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS08520 cbd6a51c2e8e894b36b773337f068304 190 Gene3D G3DSA:3.40.50.360 1 141 4.1E-20 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS25865 b85702c9c9a96500dfd998050aad7ee7 573 Gene3D G3DSA:3.30.450.40 242 356 1.0E-7 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS25865 b85702c9c9a96500dfd998050aad7ee7 573 Pfam PF06580 Histidine kinase 364 442 5.0E-26 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS25865 b85702c9c9a96500dfd998050aad7ee7 573 Pfam PF07694 5TMR of 5TMR-LYT 28 193 4.2E-51 T 11-11-2016 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 Gferi_RS25865 b85702c9c9a96500dfd998050aad7ee7 573 SUPERFAMILY SSF55781 232 354 2.09E-6 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS25865 b85702c9c9a96500dfd998050aad7ee7 573 SUPERFAMILY SSF55874 418 558 2.1E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25865 b85702c9c9a96500dfd998050aad7ee7 573 Gene3D G3DSA:3.30.565.10 412 561 7.6E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25865 b85702c9c9a96500dfd998050aad7ee7 573 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 460 559 5.0E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06095 ddb40f8eef0a49c3911627913ebc946e 104 Gene3D G3DSA:3.30.70.20 1 58 5.6E-14 T 11-11-2016 Gferi_RS06095 ddb40f8eef0a49c3911627913ebc946e 104 SUPERFAMILY SSF54862 3 61 1.06E-14 T 11-11-2016 Gferi_RS06095 ddb40f8eef0a49c3911627913ebc946e 104 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS06095 ddb40f8eef0a49c3911627913ebc946e 104 Pfam PF13187 4Fe-4S dicluster domain 9 56 1.8E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS10000 29d3d7e75d6589e8de909d165af63f4f 222 Pfam PF00551 Formyl transferase 5 189 7.8E-52 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS10000 29d3d7e75d6589e8de909d165af63f4f 222 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 5 195 31.882 T 11-11-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Gferi_RS10000 29d3d7e75d6589e8de909d165af63f4f 222 SUPERFAMILY SSF53328 5 201 8.11E-59 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS10000 29d3d7e75d6589e8de909d165af63f4f 222 Gene3D G3DSA:3.40.50.170 3 201 2.6E-65 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS10000 29d3d7e75d6589e8de909d165af63f4f 222 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 5 198 6.6E-62 T 11-11-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Gferi_RS24260 daaaed9dc1c41822af54b388243012a0 236 SUPERFAMILY SSF53790 1 231 1.44E-50 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24260 daaaed9dc1c41822af54b388243012a0 236 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 231 2.2E-76 T 11-11-2016 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 Gferi_RS24260 daaaed9dc1c41822af54b388243012a0 236 PIRSF PIRSF036427 1 236 2.2E-77 T 11-11-2016 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 Gferi_RS24260 daaaed9dc1c41822af54b388243012a0 236 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 210 1.5E-53 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24260 daaaed9dc1c41822af54b388243012a0 236 Gene3D G3DSA:3.40.1010.10 1 128 8.6E-37 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS20185 866839aceae339d5ca16567b53c0dce8 263 SUPERFAMILY SSF52540 28 201 5.66E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20185 866839aceae339d5ca16567b53c0dce8 263 Gene3D G3DSA:3.40.50.300 25 196 1.5E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20185 866839aceae339d5ca16567b53c0dce8 263 Pfam PF02421 Ferrous iron transport protein B 28 181 1.7E-58 T 11-11-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 Gferi_RS12115 e589f01b2d377e42bc8526252199fd56 255 SUPERFAMILY SSF51556 2 254 6.29E-94 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS12115 e589f01b2d377e42bc8526252199fd56 255 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 11-11-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Gferi_RS12115 e589f01b2d377e42bc8526252199fd56 255 Gene3D G3DSA:3.20.20.140 1 254 1.4E-97 T 11-11-2016 Gferi_RS12115 e589f01b2d377e42bc8526252199fd56 255 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 11-11-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Gferi_RS12115 e589f01b2d377e42bc8526252199fd56 255 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 253 8.7E-93 T 11-11-2016 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 Gferi_RS12115 e589f01b2d377e42bc8526252199fd56 255 Pfam PF01026 TatD related DNase 3 253 1.7E-85 T 11-11-2016 IPR001130 TatD family GO:0016788 Gferi_RS12115 e589f01b2d377e42bc8526252199fd56 255 PIRSF PIRSF005902 1 255 4.3E-89 T 11-11-2016 IPR001130 TatD family GO:0016788 Gferi_RS24525 ab3d13f370981b71d5207f502eb2ee6b 236 Pfam PF01797 Transposase IS200 like 4 105 2.0E-10 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS24525 ab3d13f370981b71d5207f502eb2ee6b 236 SMART SM01321 1 106 4.0E-26 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS24525 ab3d13f370981b71d5207f502eb2ee6b 236 SUPERFAMILY SSF143422 3 111 1.22E-20 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS24525 ab3d13f370981b71d5207f502eb2ee6b 236 Gene3D G3DSA:3.30.70.1290 6 109 2.5E-10 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS05890 a3794a89eb320f46a8eef6da03d3acb8 379 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 349 360 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS05890 a3794a89eb320f46a8eef6da03d3acb8 379 Pfam PF00248 Aldo/keto reductase family 16 284 5.4E-41 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS05890 a3794a89eb320f46a8eef6da03d3acb8 379 SUPERFAMILY SSF51430 1 329 1.06E-68 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS05890 a3794a89eb320f46a8eef6da03d3acb8 379 Gene3D G3DSA:1.10.1060.10 298 378 7.6E-13 T 11-11-2016 Gferi_RS05890 a3794a89eb320f46a8eef6da03d3acb8 379 Gene3D G3DSA:3.20.20.100 1 297 1.8E-59 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS05890 a3794a89eb320f46a8eef6da03d3acb8 379 Pfam PF13534 4Fe-4S dicluster domain 297 364 1.2E-10 T 11-11-2016 Gferi_RS06480 81c890bf560857bd53719aa18891aa64 382 SUPERFAMILY SSF53383 3 378 6.59E-101 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS06480 81c890bf560857bd53719aa18891aa64 382 PIRSF PIRSF005572 1 381 7.3E-60 T 11-11-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 Gferi_RS06480 81c890bf560857bd53719aa18891aa64 382 TIGRFAM TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein 3 378 6.3E-143 T 11-11-2016 IPR010969 Cysteine desulfurase-related, unknown function Gferi_RS06480 81c890bf560857bd53719aa18891aa64 382 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 192 212 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Gferi_RS06480 81c890bf560857bd53719aa18891aa64 382 Gene3D G3DSA:3.90.1150.10 257 378 5.0E-23 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS06480 81c890bf560857bd53719aa18891aa64 382 Gene3D G3DSA:3.40.640.10 15 256 3.6E-76 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS06480 81c890bf560857bd53719aa18891aa64 382 Pfam PF00266 Aminotransferase class-V 3 371 7.3E-94 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS26665 c8f5ec9e3ecb7b45e09df6e7c7da3b82 561 Gene3D G3DSA:3.90.1200.10 253 317 4.6E-10 T 11-11-2016 Gferi_RS26665 c8f5ec9e3ecb7b45e09df6e7c7da3b82 561 Pfam PF03109 ABC1 family 117 234 2.6E-33 T 11-11-2016 IPR004147 UbiB domain Gferi_RS26665 c8f5ec9e3ecb7b45e09df6e7c7da3b82 561 SUPERFAMILY SSF56112 196 339 7.72E-30 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS26665 c8f5ec9e3ecb7b45e09df6e7c7da3b82 561 SUPERFAMILY SSF56112 98 161 7.72E-30 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS12170 48948da120657e3777301a5d002d567f 283 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 85 96 - T 11-11-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS12170 48948da120657e3777301a5d002d567f 283 SUPERFAMILY SSF53790 5 223 2.36E-83 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS12170 48948da120657e3777301a5d002d567f 283 Gene3D G3DSA:1.10.10.60 230 275 5.3E-4 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS12170 48948da120657e3777301a5d002d567f 283 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 206 1.1E-30 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS12170 48948da120657e3777301a5d002d567f 283 Gene3D G3DSA:3.30.950.10 116 226 9.5E-45 T 11-11-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS12170 48948da120657e3777301a5d002d567f 283 PIRSF PIRSF005917 1 283 1.5E-106 T 11-11-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS12170 48948da120657e3777301a5d002d567f 283 Gene3D G3DSA:3.40.1010.10 6 115 3.5E-16 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS12170 48948da120657e3777301a5d002d567f 283 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 7 225 37.026 T 11-11-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS12170 48948da120657e3777301a5d002d567f 283 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 8 280 1.0E-90 T 11-11-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS01255 d3dbbcc0277f5a5576958311766a032b 129 Pfam PF05168 HEPN domain 8 125 1.3E-28 T 11-11-2016 IPR007842 HEPN domain Gferi_RS01255 d3dbbcc0277f5a5576958311766a032b 129 SUPERFAMILY SSF81593 5 125 9.42E-25 T 11-11-2016 Gferi_RS01255 d3dbbcc0277f5a5576958311766a032b 129 Gene3D G3DSA:1.20.120.330 2 127 1.7E-33 T 11-11-2016 Gferi_RS01255 d3dbbcc0277f5a5576958311766a032b 129 SMART SM00748 11 119 3.5E-13 T 11-11-2016 IPR007842 HEPN domain Gferi_RS22260 ef6a33db1920fd560f2d64f5c72653ea 319 SMART SM00342 232 315 2.5E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22260 ef6a33db1920fd560f2d64f5c72653ea 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 284 299 6.2E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS22260 ef6a33db1920fd560f2d64f5c72653ea 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 315 6.2E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS22260 ef6a33db1920fd560f2d64f5c72653ea 319 Pfam PF12833 Helix-turn-helix domain 239 316 6.2E-18 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS22260 ef6a33db1920fd560f2d64f5c72653ea 319 Gene3D G3DSA:1.10.10.60 214 268 6.5E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22260 ef6a33db1920fd560f2d64f5c72653ea 319 SUPERFAMILY SSF46689 268 316 1.75E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22260 ef6a33db1920fd560f2d64f5c72653ea 319 Gene3D G3DSA:1.10.10.60 269 316 5.5E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS10485 9014a0ea4eba5f448a8934b5c7e7e3b1 348 Pfam PF02277 Phosphoribosyltransferase 12 346 6.9E-122 T 11-11-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS10485 9014a0ea4eba5f448a8934b5c7e7e3b1 348 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15 346 4.1E-124 T 11-11-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS10485 9014a0ea4eba5f448a8934b5c7e7e3b1 348 Gene3D G3DSA:3.40.50.10210 73 329 2.8E-102 T 11-11-2016 Gferi_RS10485 9014a0ea4eba5f448a8934b5c7e7e3b1 348 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 13 348 33.31 T 11-11-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS10485 9014a0ea4eba5f448a8934b5c7e7e3b1 348 SUPERFAMILY SSF52733 6 347 3.27E-109 T 11-11-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS10485 9014a0ea4eba5f448a8934b5c7e7e3b1 348 Gene3D G3DSA:1.10.1610.10 1 72 8.5E-27 T 11-11-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS23335 4c01833fef31df82f6c39814899a2905 481 SUPERFAMILY SSF53041 4 153 3.53E-25 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23335 4c01833fef31df82f6c39814899a2905 481 Pfam PF00239 Resolvase, N terminal domain 4 154 1.3E-29 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23335 4c01833fef31df82f6c39814899a2905 481 Pfam PF07508 Recombinase 175 276 5.0E-21 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS23335 4c01833fef31df82f6c39814899a2905 481 SMART SM00857 4 155 2.5E-37 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23335 4c01833fef31df82f6c39814899a2905 481 Gene3D G3DSA:3.40.50.1390 4 134 6.1E-21 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS23335 4c01833fef31df82f6c39814899a2905 481 ProSitePatterns PS00397 Site-specific recombinases active site. 7 15 - T 11-11-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 Gferi_RS23335 4c01833fef31df82f6c39814899a2905 481 Pfam PF13408 Recombinase zinc beta ribbon domain 293 345 4.1E-7 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS03985 d8379af0f328d919321fc189afaf7ba7 277 Gene3D G3DSA:2.60.200.30 116 226 1.4E-21 T 11-11-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS03985 d8379af0f328d919321fc189afaf7ba7 277 Gene3D G3DSA:3.40.50.10330 20 115 5.8E-21 T 11-11-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS03985 d8379af0f328d919321fc189afaf7ba7 277 Pfam PF01513 ATP-NAD kinase 25 225 6.2E-30 T 11-11-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS03985 d8379af0f328d919321fc189afaf7ba7 277 SUPERFAMILY SSF111331 6 262 9.68E-51 T 11-11-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain Gferi_RS03985 d8379af0f328d919321fc189afaf7ba7 277 Hamap MF_00361 NAD kinase [nadK]. 2 264 23.306 T 11-11-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS24900 257fe87207633201541de521bdadbdcd 331 SUPERFAMILY SSF111331 73 166 8.11E-7 T 11-11-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain Gferi_RS24900 257fe87207633201541de521bdadbdcd 331 Pfam PF01513 ATP-NAD kinase 4 222 1.3E-15 T 11-11-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 Gferi_RS24900 257fe87207633201541de521bdadbdcd 331 PIRSF PIRSF018567 1 331 5.4E-124 T 11-11-2016 IPR011391 Acetoin catabolism kinase AcoX Gferi_RS02165 94f43bb162b4d9107be59687cc42216e 372 SUPERFAMILY SSF102705 6 371 5.1E-127 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Gferi_RS02165 94f43bb162b4d9107be59687cc42216e 372 PIRSF PIRSF037489 1 372 1.8E-139 T 11-11-2016 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria Gferi_RS02165 94f43bb162b4d9107be59687cc42216e 372 Gene3D G3DSA:3.30.70.830 133 237 1.6E-41 T 11-11-2016 Gferi_RS02165 94f43bb162b4d9107be59687cc42216e 372 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 5 368 1.5E-71 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Gferi_RS02165 94f43bb162b4d9107be59687cc42216e 372 Gene3D G3DSA:3.40.1390.30 239 330 2.9E-34 T 11-11-2016 Gferi_RS02165 94f43bb162b4d9107be59687cc42216e 372 Gene3D G3DSA:3.40.1390.30 116 131 2.9E-34 T 11-11-2016 Gferi_RS02165 94f43bb162b4d9107be59687cc42216e 372 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 7 351 5.8E-82 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Gferi_RS02165 94f43bb162b4d9107be59687cc42216e 372 Gene3D G3DSA:3.40.1390.30 6 115 9.1E-46 T 11-11-2016 Gferi_RS13300 aa0279c7176cbae029f7a9c5e61f21f4 239 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 15 215 28.606 T 11-11-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Gferi_RS13300 aa0279c7176cbae029f7a9c5e61f21f4 239 Gene3D G3DSA:3.40.50.150 5 238 9.5E-81 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS13300 aa0279c7176cbae029f7a9c5e61f21f4 239 SUPERFAMILY SSF53335 5 238 3.75E-49 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS13300 aa0279c7176cbae029f7a9c5e61f21f4 239 PIRSF PIRSF003078 2 221 6.1E-57 T 11-11-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Gferi_RS13300 aa0279c7176cbae029f7a9c5e61f21f4 239 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 27 218 3.1E-55 T 11-11-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Gferi_RS13300 aa0279c7176cbae029f7a9c5e61f21f4 239 Pfam PF02527 rRNA small subunit methyltransferase G 23 195 7.9E-53 T 11-11-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 148 173 1.7E-15 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.7E-15 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 234 248 1.7E-15 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 273 280 1.7E-15 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 383 398 1.7E-15 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 Gene3D G3DSA:3.30.390.30 320 379 4.5E-4 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 Gene3D G3DSA:3.50.50.60 8 106 2.7E-26 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 2.1E-21 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 2.1E-21 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.1E-21 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 233 249 2.1E-21 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.1E-21 T 11-11-2016 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 Gene3D G3DSA:3.50.50.60 107 306 1.2E-51 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 297 3.3E-60 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 SUPERFAMILY SSF51905 147 308 6.39E-33 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13700 5dc28f47695ea6c978de9c5757e6ae0b 400 SUPERFAMILY SSF51905 8 194 3.48E-44 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS01135 4c2d96a4f062e7540286857ca58a6c55 68 Gene3D G3DSA:1.10.10.10 2 67 3.3E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01135 4c2d96a4f062e7540286857ca58a6c55 68 Pfam PF01726 LexA DNA binding domain 2 63 6.7E-17 T 11-11-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 Gferi_RS01135 4c2d96a4f062e7540286857ca58a6c55 68 SUPERFAMILY SSF46785 2 67 1.08E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08750 fe91e06b1c9c0ade011dc4650bc10a1d 223 SUPERFAMILY SSF46689 8 72 1.65E-20 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08750 fe91e06b1c9c0ade011dc4650bc10a1d 223 Gene3D G3DSA:1.10.357.10 10 167 4.0E-31 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS08750 fe91e06b1c9c0ade011dc4650bc10a1d 223 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 56 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS08750 fe91e06b1c9c0ade011dc4650bc10a1d 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 8.8E-14 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08750 fe91e06b1c9c0ade011dc4650bc10a1d 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 8.8E-14 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08750 fe91e06b1c9c0ade011dc4650bc10a1d 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 9.4E-21 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS04595 0a82300b5c06e7dd18e2c0d27b35f284 318 Pfam PF01012 Electron transfer flavoprotein domain 66 156 2.0E-7 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS04595 0a82300b5c06e7dd18e2c0d27b35f284 318 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 197 278 1.0E-23 T 11-11-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 Gferi_RS04595 0a82300b5c06e7dd18e2c0d27b35f284 318 SUPERFAMILY SSF52402 66 161 2.93E-10 T 11-11-2016 Gferi_RS04595 0a82300b5c06e7dd18e2c0d27b35f284 318 Gene3D G3DSA:3.40.50.1220 190 315 1.6E-41 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS04595 0a82300b5c06e7dd18e2c0d27b35f284 318 SUPERFAMILY SSF52467 194 315 1.25E-35 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS04595 0a82300b5c06e7dd18e2c0d27b35f284 318 Gene3D G3DSA:3.40.50.620 65 155 1.2E-8 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS16770 cab89ac0ad17297fbc9ed7e6deb29193 92 SUPERFAMILY SSF47729 1 91 5.15E-30 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Gferi_RS16770 cab89ac0ad17297fbc9ed7e6deb29193 92 Pfam PF00216 Bacterial DNA-binding protein 1 91 2.9E-32 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 Gferi_RS16770 cab89ac0ad17297fbc9ed7e6deb29193 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-11-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 Gferi_RS16770 cab89ac0ad17297fbc9ed7e6deb29193 92 SMART SM00411 1 91 4.4E-37 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 Gferi_RS16770 cab89ac0ad17297fbc9ed7e6deb29193 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 3.2E-11 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 Gferi_RS16770 cab89ac0ad17297fbc9ed7e6deb29193 92 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 3.2E-11 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 Gferi_RS16770 cab89ac0ad17297fbc9ed7e6deb29193 92 Gene3D G3DSA:4.10.520.10 1 91 3.0E-36 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 Gferi_RS04280 072394e73be28afc68f725632924f80f 284 SUPERFAMILY SSF53623 44 264 1.83E-11 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS04280 072394e73be28afc68f725632924f80f 284 Gene3D G3DSA:3.40.1190.10 29 264 3.1E-14 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS04280 072394e73be28afc68f725632924f80f 284 Pfam PF08245 Mur ligase middle domain 46 247 1.4E-8 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS02000 0e0078bfa9f9dd82c79712a8293b52ab 244 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 2 230 2.4E-63 T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Gferi_RS02000 0e0078bfa9f9dd82c79712a8293b52ab 244 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 129 141 - T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Gferi_RS02000 0e0078bfa9f9dd82c79712a8293b52ab 244 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 3 235 5.2E-82 T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Gferi_RS02000 0e0078bfa9f9dd82c79712a8293b52ab 244 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 1 241 17.675 T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.2E-24 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.2E-24 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.2E-24 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 90 2.2E-45 T 11-11-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.822 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-11-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 SUPERFAMILY SSF54570 2 84 8.76E-34 T 11-11-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 Gene3D G3DSA:3.30.860.10 1 90 3.7E-40 T 11-11-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 Pfam PF00203 Ribosomal protein S19 3 83 3.7E-36 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17415 b4e475d3bd05fbb559d8d258a039ce1e 94 PIRSF PIRSF002144 1 94 2.5E-32 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS02200 ebcb287a2c0c691747f4f5dd6efe500e 334 Gene3D G3DSA:1.10.3210.10 37 328 2.7E-81 T 11-11-2016 IPR006674 HD domain Gferi_RS02200 ebcb287a2c0c691747f4f5dd6efe500e 334 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 38 167 7.1E-50 T 11-11-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 Gferi_RS02200 ebcb287a2c0c691747f4f5dd6efe500e 334 SMART SM00471 71 197 7.4E-14 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS02200 ebcb287a2c0c691747f4f5dd6efe500e 334 SUPERFAMILY SSF109604 27 332 5.39E-83 T 11-11-2016 Gferi_RS02200 ebcb287a2c0c691747f4f5dd6efe500e 334 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 15 328 32.001 T 11-11-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 Gferi_RS02200 ebcb287a2c0c691747f4f5dd6efe500e 334 Pfam PF01966 HD domain 75 187 1.2E-18 T 11-11-2016 IPR006674 HD domain Gferi_RS02200 ebcb287a2c0c691747f4f5dd6efe500e 334 Pfam PF13286 Phosphohydrolase-associated domain 248 324 3.0E-21 T 11-11-2016 IPR026875 Phosphohydrolase-associated domain Gferi_RS14215 5c57b5ea77192bc832d84aabc2944e2c 201 Pfam PF13580 SIS domain 5 58 2.5E-7 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS14215 5c57b5ea77192bc832d84aabc2944e2c 201 Pfam PF01380 SIS domain 110 175 2.5E-8 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS14215 5c57b5ea77192bc832d84aabc2944e2c 201 Gene3D G3DSA:3.40.50.10490 3 197 1.9E-48 T 11-11-2016 Gferi_RS14215 5c57b5ea77192bc832d84aabc2944e2c 201 SUPERFAMILY SSF53697 82 196 4.89E-37 T 11-11-2016 Gferi_RS14215 5c57b5ea77192bc832d84aabc2944e2c 201 SUPERFAMILY SSF53697 3 54 4.89E-37 T 11-11-2016 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 Gene3D G3DSA:2.40.50.140 1 136 3.3E-63 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 137 8.9E-67 T 11-11-2016 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 Pfam PF00164 Ribosomal protein S12/S23 3 136 4.8E-41 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 SUPERFAMILY SSF50249 3 136 6.85E-49 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 PRINTS PR01034 Ribosomal protein S12 signature 40 55 1.8E-59 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 PRINTS PR01034 Ribosomal protein S12 signature 55 70 1.8E-59 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 PRINTS PR01034 Ribosomal protein S12 signature 107 123 1.8E-59 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 PRINTS PR01034 Ribosomal protein S12 signature 71 90 1.8E-59 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 PRINTS PR01034 Ribosomal protein S12 signature 123 135 1.8E-59 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 PRINTS PR01034 Ribosomal protein S12 signature 90 107 1.8E-59 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 136 41.065 T 11-11-2016 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17370 9276c4f0868e4a954a40f491036b9102 137 ProSitePatterns PS00055 Ribosomal protein S12 signature. 56 63 - T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 SUPERFAMILY SSF142984 161 230 6.8E-14 T 11-11-2016 Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 Gene3D G3DSA:1.10.1060.10 193 336 2.9E-12 T 11-11-2016 Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 253 264 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 SUPERFAMILY SSF142019 3 167 2.75E-41 T 11-11-2016 Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 10 150 4.8E-43 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 Pfam PF10531 SLBB domain 163 208 1.0E-12 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 Gene3D G3DSA:2.40.50.100 397 433 2.0E-4 T 11-11-2016 Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 Pfam PF13375 RnfC Barrel sandwich hybrid domain 382 435 1.8E-13 T 11-11-2016 IPR026902 RnfC Barrel sandwich hybrid domain Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 PIRSF PIRSF036408 1 443 4.6E-185 T 11-11-2016 IPR017054 Propanediol utilization protein, PduS, predicted Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 Pfam PF13534 4Fe-4S dicluster domain 252 313 1.2E-8 T 11-11-2016 Gferi_RS18355 581d76bf428e266b8fac3ec09df016e9 443 SUPERFAMILY SSF46548 200 334 6.8E-12 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS08420 ee48ef380327d75bdb7ca6c987df1ab6 334 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 63 330 6.0E-34 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS08420 ee48ef380327d75bdb7ca6c987df1ab6 334 PIRSF PIRSF017082 3 334 1.7E-75 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS08420 ee48ef380327d75bdb7ca6c987df1ab6 334 SUPERFAMILY SSF53850 127 297 1.6E-6 T 11-11-2016 Gferi_RS07340 9595b1b2761fc282ec1fea54f0eae208 355 Pfam PF04055 Radical SAM superfamily 65 197 1.2E-14 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS07340 9595b1b2761fc282ec1fea54f0eae208 355 Pfam PF13394 4Fe-4S single cluster domain 68 125 3.2E-8 T 11-11-2016 Gferi_RS07340 9595b1b2761fc282ec1fea54f0eae208 355 Pfam PF13186 Iron-sulfur cluster-binding domain 282 332 6.3E-5 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS07340 9595b1b2761fc282ec1fea54f0eae208 355 SUPERFAMILY SSF102114 59 344 6.08E-53 T 11-11-2016 Gferi_RS07340 9595b1b2761fc282ec1fea54f0eae208 355 Gene3D G3DSA:3.20.20.70 57 344 1.3E-49 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS07340 9595b1b2761fc282ec1fea54f0eae208 355 SMART SM00729 61 259 0.0035 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS15565 eadc3a8831bee64578636071c66f63e9 165 SMART SM00260 1 140 2.9E-31 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS15565 eadc3a8831bee64578636071c66f63e9 165 SUPERFAMILY SSF50341 3 145 9.55E-33 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS15565 eadc3a8831bee64578636071c66f63e9 165 Gene3D G3DSA:2.40.50.180 46 82 1.0E-12 T 11-11-2016 Gferi_RS15565 eadc3a8831bee64578636071c66f63e9 165 Pfam PF01584 CheW-like domain 6 143 1.8E-30 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 Gferi_RS15565 eadc3a8831bee64578636071c66f63e9 165 Gene3D G3DSA:2.30.30.40 83 134 1.7E-10 T 11-11-2016 Gferi_RS20640 259db5415aa83d0c5622082c71a800d3 814 PIRSF PIRSF000460 2 811 4.4E-231 T 11-11-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Gferi_RS20640 259db5415aa83d0c5622082c71a800d3 814 Gene3D G3DSA:3.40.50.2000 473 788 2.7E-133 T 11-11-2016 Gferi_RS20640 259db5415aa83d0c5622082c71a800d3 814 Pfam PF00343 Carbohydrate phosphorylase 93 803 0.0 T 11-11-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Gferi_RS20640 259db5415aa83d0c5622082c71a800d3 814 Gene3D G3DSA:3.40.50.2000 5 472 2.2E-195 T 11-11-2016 Gferi_RS20640 259db5415aa83d0c5622082c71a800d3 814 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 5 803 0.0 T 11-11-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Gferi_RS20640 259db5415aa83d0c5622082c71a800d3 814 SUPERFAMILY SSF53756 5 807 0.0 T 11-11-2016 Gferi_RS20640 259db5415aa83d0c5622082c71a800d3 814 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 647 659 - T 11-11-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Gferi_RS04465 c78f8c725c2f5a8cac87aa123ab1fc56 426 PRINTS PR00758 Arsenical pump membrane protein signature 219 244 8.6E-9 T 11-11-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Gferi_RS04465 c78f8c725c2f5a8cac87aa123ab1fc56 426 PRINTS PR00758 Arsenical pump membrane protein signature 396 420 8.6E-9 T 11-11-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Gferi_RS04465 c78f8c725c2f5a8cac87aa123ab1fc56 426 PRINTS PR00758 Arsenical pump membrane protein signature 103 127 8.6E-9 T 11-11-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Gferi_RS04465 c78f8c725c2f5a8cac87aa123ab1fc56 426 PRINTS PR00758 Arsenical pump membrane protein signature 276 300 8.6E-9 T 11-11-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Gferi_RS04465 c78f8c725c2f5a8cac87aa123ab1fc56 426 PRINTS PR00758 Arsenical pump membrane protein signature 363 388 8.6E-9 T 11-11-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Gferi_RS04465 c78f8c725c2f5a8cac87aa123ab1fc56 426 Pfam PF03600 Citrate transporter 20 367 3.4E-48 T 11-11-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Gferi_RS11445 cfbaaf501ac84a722f769ca41a266434 364 Pfam PF04015 Domain of unknown function (DUF362) 42 247 1.4E-26 T 11-11-2016 IPR007160 Domain of unknown function DUF362 Gferi_RS07455 5f4c24944d50064d8cd2c7e494083122 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 2.3E-10 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS07455 5f4c24944d50064d8cd2c7e494083122 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 38 54 2.3E-10 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS07455 5f4c24944d50064d8cd2c7e494083122 79 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.3E-10 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS07455 5f4c24944d50064d8cd2c7e494083122 79 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 76 1.0E-18 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS07455 5f4c24944d50064d8cd2c7e494083122 79 Pfam PF01455 HupF/HypC family 1 59 4.7E-19 T 11-11-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Gferi_RS07455 5f4c24944d50064d8cd2c7e494083122 79 SUPERFAMILY SSF159127 1 76 1.12E-18 T 11-11-2016 Gferi_RS18285 c9b44d0ba53fe8d864e66c5cec78847d 91 Pfam PF00936 BMC domain 5 80 6.1E-29 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18285 c9b44d0ba53fe8d864e66c5cec78847d 91 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 22 41 - T 11-11-2016 IPR020808 Bacterial microcompartments protein, conserved site Gferi_RS18285 c9b44d0ba53fe8d864e66c5cec78847d 91 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 48 3.0E-16 T 11-11-2016 Gferi_RS18285 c9b44d0ba53fe8d864e66c5cec78847d 91 SUPERFAMILY SSF143414 4 89 2.49E-32 T 11-11-2016 Gferi_RS18285 c9b44d0ba53fe8d864e66c5cec78847d 91 SMART SM00877 4 80 2.7E-37 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS08635 a942e9842a88aa650b550cd1dcad09be 347 Pfam PF12698 ABC-2 family transporter protein 20 338 1.8E-15 T 11-11-2016 Gferi_RS06735 b260891b9243556645804452d5969056 373 Pfam PF00155 Aminotransferase class I and II 50 349 2.6E-40 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS06735 b260891b9243556645804452d5969056 373 Gene3D G3DSA:3.90.1150.10 241 368 6.4E-17 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS06735 b260891b9243556645804452d5969056 373 SUPERFAMILY SSF53383 48 353 2.76E-71 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS06735 b260891b9243556645804452d5969056 373 Gene3D G3DSA:3.40.640.10 48 240 1.4E-54 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS16805 14680eddfd6089b8707640cac6516902 309 SUPERFAMILY SSF53067 3 122 2.72E-35 T 11-11-2016 Gferi_RS16805 14680eddfd6089b8707640cac6516902 309 Pfam PF02541 Ppx/GppA phosphatase family 29 306 1.1E-60 T 11-11-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Gferi_RS16805 14680eddfd6089b8707640cac6516902 309 SUPERFAMILY SSF53067 128 306 6.38E-42 T 11-11-2016 Gferi_RS16805 14680eddfd6089b8707640cac6516902 309 Gene3D G3DSA:3.30.420.150 127 306 2.3E-57 T 11-11-2016 Gferi_RS16805 14680eddfd6089b8707640cac6516902 309 Gene3D G3DSA:3.30.420.40 1 122 1.9E-41 T 11-11-2016 Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 SUPERFAMILY SSF52540 13 241 1.33E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 ProSitePatterns PS00211 ABC transporters family signature. 415 429 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 Gene3D G3DSA:3.40.50.300 13 248 5.7E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 Gene3D G3DSA:3.40.50.300 266 512 1.9E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 SUPERFAMILY SSF52540 262 505 1.16E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 SMART SM00382 39 229 3.7E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 SMART SM00382 294 490 9.2 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 Pfam PF00005 ABC transporter 31 180 3.4E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS09305 941bfe4ab01bfd3a107a82f9bbdc5d6c 527 Pfam PF00005 ABC transporter 285 442 4.8E-17 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS03325 55a2b13cf073db5a6d81b8db39d623c5 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 399 8.7E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS03325 55a2b13cf073db5a6d81b8db39d623c5 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 371 385 8.7E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS03325 55a2b13cf073db5a6d81b8db39d623c5 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 421 8.7E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS03325 55a2b13cf073db5a6d81b8db39d623c5 459 Gene3D G3DSA:3.30.565.10 299 446 1.7E-24 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03325 55a2b13cf073db5a6d81b8db39d623c5 459 SMART SM00387 329 442 8.9E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03325 55a2b13cf073db5a6d81b8db39d623c5 459 Gene3D G3DSA:1.10.287.130 223 291 1.3E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS03325 55a2b13cf073db5a6d81b8db39d623c5 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 333 441 4.9E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03325 55a2b13cf073db5a6d81b8db39d623c5 459 SUPERFAMILY SSF55874 296 439 4.71E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02125 6af4ce7ce12aaffe3004cfaecf3f9222 528 Pfam PF00270 DEAD/DEAH box helicase 28 195 2.9E-55 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Gferi_RS02125 6af4ce7ce12aaffe3004cfaecf3f9222 528 SMART SM00487 23 221 9.9E-67 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS02125 6af4ce7ce12aaffe3004cfaecf3f9222 528 SUPERFAMILY SSF52540 71 358 5.4E-80 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02125 6af4ce7ce12aaffe3004cfaecf3f9222 528 SMART SM00490 257 338 1.8E-32 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS02125 6af4ce7ce12aaffe3004cfaecf3f9222 528 Pfam PF03880 DbpA RNA binding domain 453 524 1.0E-26 T 11-11-2016 IPR005580 DbpA, RNA-binding domain Gferi_RS02125 6af4ce7ce12aaffe3004cfaecf3f9222 528 Gene3D G3DSA:3.40.50.300 219 375 2.4E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS02125 6af4ce7ce12aaffe3004cfaecf3f9222 528 Pfam PF00271 Helicase conserved C-terminal domain 229 338 4.1E-31 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS02125 6af4ce7ce12aaffe3004cfaecf3f9222 528 Gene3D G3DSA:3.40.50.300 5 218 6.2E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22500 b01fc39413eb05dca30145bb4d305924 306 SUPERFAMILY SSF161098 93 290 4.71E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22500 b01fc39413eb05dca30145bb4d305924 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 302 3.7E-38 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22500 b01fc39413eb05dca30145bb4d305924 306 Gene3D G3DSA:1.10.3720.10 99 294 2.2E-16 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS11875 e54063800925650fddd99c63261f120b 508 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 21 485 6.6E-180 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS11875 e54063800925650fddd99c63261f120b 508 PIRSF PIRSF005690 8 500 4.0E-170 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS11650 a89837c4b4016401e615b9e1380da6c5 805 Pfam PF00395 S-layer homology domain 752 793 0.0048 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11650 a89837c4b4016401e615b9e1380da6c5 805 Pfam PF00395 S-layer homology domain 687 729 3.8E-4 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS12185 b332b2791adb012431a69432ef2bb440 57 SUPERFAMILY SSF54862 1 55 4.61E-19 T 11-11-2016 Gferi_RS12185 b332b2791adb012431a69432ef2bb440 57 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS12185 b332b2791adb012431a69432ef2bb440 57 Pfam PF12838 4Fe-4S dicluster domain 8 52 3.1E-10 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS12185 b332b2791adb012431a69432ef2bb440 57 Gene3D G3DSA:3.30.70.20 3 53 1.1E-17 T 11-11-2016 Gferi_RS12185 b332b2791adb012431a69432ef2bb440 57 PRINTS PR00354 7Fe ferredoxin signature 17 27 6.0E-5 T 11-11-2016 IPR000813 7Fe ferredoxin GO:0009055 Gferi_RS12185 b332b2791adb012431a69432ef2bb440 57 PRINTS PR00354 7Fe ferredoxin signature 33 50 6.0E-5 T 11-11-2016 IPR000813 7Fe ferredoxin GO:0009055 Gferi_RS12185 b332b2791adb012431a69432ef2bb440 57 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 38 49 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS17945 619e75f0e9aa562b6fc4a399fb9f10d5 341 SMART SM00852 176 307 9.3E-19 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS17945 619e75f0e9aa562b6fc4a399fb9f10d5 341 Gene3D G3DSA:3.40.980.10 163 306 1.3E-30 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS17945 619e75f0e9aa562b6fc4a399fb9f10d5 341 SUPERFAMILY SSF53218 173 337 6.02E-30 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS17945 619e75f0e9aa562b6fc4a399fb9f10d5 341 Pfam PF00994 Probable molybdopterin binding domain 177 303 2.3E-22 T 11-11-2016 IPR001453 MoaB/Mog domain Gferi_RS02090 69b3bb7e1ff96de7fe4d8f059cb6b64b 179 Gene3D G3DSA:1.20.1200.10 12 169 3.4E-59 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS02090 69b3bb7e1ff96de7fe4d8f059cb6b64b 179 Pfam PF01923 Cobalamin adenosyltransferase 3 164 8.7E-60 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS02090 69b3bb7e1ff96de7fe4d8f059cb6b64b 179 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 144 4.0E-45 T 11-11-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS02090 69b3bb7e1ff96de7fe4d8f059cb6b64b 179 SUPERFAMILY SSF89028 1 169 7.26E-60 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS02090 69b3bb7e1ff96de7fe4d8f059cb6b64b 179 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 168 4.7E-60 T 11-11-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS04100 8a63590ad49bffe04c5f6c3d89df08e5 429 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 379 5.2E-8 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS03840 e389554675e1055531aa641b55ffacbe 238 Pfam PF03374 Phage antirepressor protein KilAC domain 125 223 8.3E-26 T 11-11-2016 IPR005039 Antirepressor protein, C-terminal GO:0003677 Gferi_RS03840 e389554675e1055531aa641b55ffacbe 238 Pfam PF02498 BRO family, N-terminal domain 2 81 7.2E-30 T 11-11-2016 IPR003497 BRO N-terminal domain Gferi_RS03840 e389554675e1055531aa641b55ffacbe 238 SMART SM01040 1 81 6.3E-35 T 11-11-2016 IPR003497 BRO N-terminal domain Gferi_RS08350 6316e445d7ca40be72c1729c535c5607 123 SUPERFAMILY SSF54593 6 122 7.19E-17 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS08350 6316e445d7ca40be72c1729c535c5607 123 Gene3D G3DSA:3.10.180.10 8 121 5.5E-18 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS08350 6316e445d7ca40be72c1729c535c5607 123 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 91 3.8E-6 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Gferi_RS03085 6dc3b5eb361db7e4eacdf0c9bf5cffe0 391 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 5 373 5.4E-113 T 11-11-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 Gferi_RS03085 6dc3b5eb361db7e4eacdf0c9bf5cffe0 391 SUPERFAMILY SSF143437 3 173 4.01E-49 T 11-11-2016 Gferi_RS03085 6dc3b5eb361db7e4eacdf0c9bf5cffe0 391 SUPERFAMILY SSF52402 174 389 1.98E-48 T 11-11-2016 Gferi_RS03085 6dc3b5eb361db7e4eacdf0c9bf5cffe0 391 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 370 4.2E-66 T 11-11-2016 IPR020536 Thil, AANH domain GO:0004810 Gferi_RS03085 6dc3b5eb361db7e4eacdf0c9bf5cffe0 391 Pfam PF02926 THUMP domain 57 162 4.0E-21 T 11-11-2016 IPR004114 THUMP domain GO:0003723 Gferi_RS03085 6dc3b5eb361db7e4eacdf0c9bf5cffe0 391 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 391 150.661 T 11-11-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 Gferi_RS03085 6dc3b5eb361db7e4eacdf0c9bf5cffe0 391 SMART SM00981 73 165 4.6E-28 T 11-11-2016 IPR004114 THUMP domain GO:0003723 Gferi_RS03085 6dc3b5eb361db7e4eacdf0c9bf5cffe0 391 Gene3D G3DSA:3.40.50.620 173 333 3.4E-52 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 48 178 7.8E-19 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 Pfam PF00633 Helix-hairpin-helix motif 113 141 1.7E-8 T 11-11-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 20 279 5.4E-101 T 11-11-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 Gene3D G3DSA:3.90.79.10 249 363 3.6E-26 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 Gene3D G3DSA:1.10.1670.10 137 238 5.9E-38 T 11-11-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 SMART SM00478 52 203 9.0E-53 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 SUPERFAMILY SSF48150 17 238 2.04E-74 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 Gene3D G3DSA:1.10.340.30 35 136 1.7E-44 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 Pfam PF14815 NUDIX domain 249 361 4.3E-21 T 11-11-2016 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 SUPERFAMILY SSF55811 233 362 3.01E-20 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS20610 4514764ee035b4ed73b331d947cac6c3 365 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 205 221 - T 11-11-2016 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Gferi_RS01845 3e3d55f3bb3a39b8869f8cb906cef67d 197 SMART SM01207 9 183 6.5E-80 T 11-11-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Gferi_RS01845 3e3d55f3bb3a39b8869f8cb906cef67d 197 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 6 191 20.182 T 11-11-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Gferi_RS01845 3e3d55f3bb3a39b8869f8cb906cef67d 197 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 5 193 6.2E-52 T 11-11-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Gferi_RS01845 3e3d55f3bb3a39b8869f8cb906cef67d 197 Pfam PF02660 Glycerol-3-phosphate acyltransferase 10 182 3.8E-52 T 11-11-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Gferi_RS19995 d0af5a4f3d7dcd6d10fa4b5669fc770b 447 Gene3D G3DSA:3.30.565.10 291 442 2.8E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19995 d0af5a4f3d7dcd6d10fa4b5669fc770b 447 SUPERFAMILY SSF55874 332 438 2.23E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19995 d0af5a4f3d7dcd6d10fa4b5669fc770b 447 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 439 2.1E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS19995 d0af5a4f3d7dcd6d10fa4b5669fc770b 447 Pfam PF10114 Sensory domain found in PocR 41 198 4.6E-37 T 11-11-2016 IPR018771 PocR domain Gferi_RS19995 d0af5a4f3d7dcd6d10fa4b5669fc770b 447 Pfam PF06580 Histidine kinase 237 315 5.9E-14 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS22480 ead6aef90a34bcfe7f95ea4084090735 79 Pfam PF12674 Putative zinc ribbon domain 4 77 1.5E-15 T 11-11-2016 IPR025868 Putative zinc ribbon domain Gferi_RS10940 58f8976757e73c23ef2d63829b336b45 121 Pfam PF10135 Rod binding protein 59 107 2.0E-13 T 11-11-2016 IPR019301 Flagellar protein FlgJ, N-terminal Gferi_RS10940 58f8976757e73c23ef2d63829b336b45 121 PRINTS PR01002 Flagellar protein FlgJ signature 37 60 2.7E-6 T 11-11-2016 Gferi_RS10940 58f8976757e73c23ef2d63829b336b45 121 PRINTS PR01002 Flagellar protein FlgJ signature 84 106 2.7E-6 T 11-11-2016 Gferi_RS02045 76a4fb8d6e1ff55da63328bc20b7b39a 222 SMART SM01133 2 214 7.7E-99 T 11-11-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 Gferi_RS02045 76a4fb8d6e1ff55da63328bc20b7b39a 222 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 3 211 3.5E-87 T 11-11-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 Gferi_RS02045 76a4fb8d6e1ff55da63328bc20b7b39a 222 Gene3D G3DSA:3.20.20.70 1 216 1.2E-91 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS02045 76a4fb8d6e1ff55da63328bc20b7b39a 222 Pfam PF01791 DeoC/LacD family aldolase 4 207 8.9E-18 T 11-11-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 Gferi_RS02045 76a4fb8d6e1ff55da63328bc20b7b39a 222 SUPERFAMILY SSF51569 1 214 2.83E-83 T 11-11-2016 Gferi_RS02045 76a4fb8d6e1ff55da63328bc20b7b39a 222 PIRSF PIRSF001357 1 221 2.3E-78 T 11-11-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 Gferi_RS02045 76a4fb8d6e1ff55da63328bc20b7b39a 222 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 1 216 36.55 T 11-11-2016 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 Gferi_RS00155 3aec0963101a6ed5a3aa5e9453723637 177 SUPERFAMILY SSF46785 76 150 2.98E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00155 3aec0963101a6ed5a3aa5e9453723637 177 Gene3D G3DSA:1.10.10.10 76 150 1.2E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00155 3aec0963101a6ed5a3aa5e9453723637 177 Pfam PF04079 Segregation and condensation complex subunit ScpB 1 158 8.1E-58 T 11-11-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Gferi_RS00155 3aec0963101a6ed5a3aa5e9453723637 177 SUPERFAMILY SSF46785 1 71 1.54E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00155 3aec0963101a6ed5a3aa5e9453723637 177 PIRSF PIRSF019345 1 177 9.9E-54 T 11-11-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Gferi_RS00155 3aec0963101a6ed5a3aa5e9453723637 177 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 2 169 2.3E-45 T 11-11-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Gferi_RS00155 3aec0963101a6ed5a3aa5e9453723637 177 Gene3D G3DSA:1.10.10.10 1 71 1.7E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14130 6dbe762bc554f012c20891b688ecfdc8 286 SUPERFAMILY SSF103481 39 136 1.16E-11 T 11-11-2016 Gferi_RS14130 6dbe762bc554f012c20891b688ecfdc8 286 Pfam PF00892 EamA-like transporter family 151 284 1.7E-9 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS14130 6dbe762bc554f012c20891b688ecfdc8 286 Pfam PF00892 EamA-like transporter family 4 135 4.2E-7 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS14130 6dbe762bc554f012c20891b688ecfdc8 286 SUPERFAMILY SSF103481 192 285 5.75E-9 T 11-11-2016 Gferi_RS19015 43b61a0610daa4a18473a00701cc6eb2 163 Pfam PF08281 Sigma-70, region 4 107 154 2.1E-14 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19015 43b61a0610daa4a18473a00701cc6eb2 163 Gene3D G3DSA:1.10.10.10 107 157 2.1E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19015 43b61a0610daa4a18473a00701cc6eb2 163 SUPERFAMILY SSF88946 5 82 2.51E-16 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19015 43b61a0610daa4a18473a00701cc6eb2 163 SUPERFAMILY SSF88659 108 156 4.86E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19015 43b61a0610daa4a18473a00701cc6eb2 163 Gene3D G3DSA:1.10.1740.10 4 74 9.6E-18 T 11-11-2016 Gferi_RS19015 43b61a0610daa4a18473a00701cc6eb2 163 Pfam PF04542 Sigma-70 region 2 10 74 1.1E-12 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS19015 43b61a0610daa4a18473a00701cc6eb2 163 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 155 3.0E-23 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS08550 98d665d66a5651fdc15e738c05267b01 140 TIGRFAM TIGR01753 flav_short: flavodoxin 4 139 1.8E-46 T 11-11-2016 IPR010087 Flavodoxin, short chain GO:0010181 Gferi_RS08550 98d665d66a5651fdc15e738c05267b01 140 Pfam PF00258 Flavodoxin 6 129 5.9E-15 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Gferi_RS08550 98d665d66a5651fdc15e738c05267b01 140 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-11-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 Gferi_RS08550 98d665d66a5651fdc15e738c05267b01 140 SUPERFAMILY SSF52218 3 139 1.82E-36 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS08550 98d665d66a5651fdc15e738c05267b01 140 Gene3D G3DSA:3.40.50.360 4 139 1.1E-43 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS22780 97919b10b3ea5114f9f70c41afa02d6b 131 Pfam PF13673 Acetyltransferase (GNAT) domain 30 122 9.1E-12 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS22780 97919b10b3ea5114f9f70c41afa02d6b 131 Gene3D G3DSA:3.40.630.30 13 125 1.8E-21 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS22780 97919b10b3ea5114f9f70c41afa02d6b 131 SUPERFAMILY SSF55729 12 123 6.25E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11645 8465444eaed720561b5126a49aee0a48 759 Pfam PF00395 S-layer homology domain 701 744 0.0018 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11645 8465444eaed720561b5126a49aee0a48 759 Pfam PF00395 S-layer homology domain 577 617 1.5E-5 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 Pfam PF00158 Sigma-54 interaction domain 205 372 2.2E-67 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 Gene3D G3DSA:1.10.10.60 456 509 4.6E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 Gene3D G3DSA:3.30.450.20 79 187 8.3E-5 T 11-11-2016 Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 Gene3D G3DSA:1.10.8.60 379 449 1.3E-20 T 11-11-2016 Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 229 242 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 SMART SM00382 225 380 4.5E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 SUPERFAMILY SSF52540 204 447 7.89E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 Gene3D G3DSA:3.40.50.300 202 378 2.0E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24690 9d790701ae07e902d3d63a9bafa3a595 516 SUPERFAMILY SSF46689 455 509 1.11E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25430 b57e27424fbf0d0a39ffc5d4ca8672ee 121 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 117 1.3E-35 T 11-11-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS25430 b57e27424fbf0d0a39ffc5d4ca8672ee 121 SUPERFAMILY SSF55620 2 119 4.39E-37 T 11-11-2016 Gferi_RS25430 b57e27424fbf0d0a39ffc5d4ca8672ee 121 Pfam PF02152 Dihydroneopterin aldolase 4 115 3.0E-31 T 11-11-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS25430 b57e27424fbf0d0a39ffc5d4ca8672ee 121 SMART SM00905 4 117 3.8E-46 T 11-11-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS25430 b57e27424fbf0d0a39ffc5d4ca8672ee 121 TIGRFAM TIGR00526 folB_dom: FolB domain 1 120 2.3E-33 T 11-11-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 Gferi_RS25430 b57e27424fbf0d0a39ffc5d4ca8672ee 121 Gene3D G3DSA:3.30.1130.10 1 119 7.8E-40 T 11-11-2016 Gferi_RS02550 3d27a30319ad5321f1fb45310fc59bf5 495 Pfam PF08666 SAF domain 11 80 5.8E-13 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS02550 3d27a30319ad5321f1fb45310fc59bf5 495 SMART SM00858 11 82 2.2E-11 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS02550 3d27a30319ad5321f1fb45310fc59bf5 495 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 107 494 1.2E-163 T 11-11-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 Gferi_RS07695 aab92426ca861f31ac31c0238dcf08cf 270 Pfam PF02596 Uncharacterised ArCR, COG2043 13 216 5.6E-51 T 11-11-2016 IPR003748 Protein of unknown function DUF169 Gferi_RS04760 5b587be7b3501d2a895c59899d3bb555 77 Pfam PF15594 Immunity protein 50 14 73 6.6E-7 T 11-11-2016 IPR028957 Immunity protein 50 Gferi_RS20205 c33ede5aad91156e4682633fd45d54e5 153 Gene3D G3DSA:3.40.50.960 2 152 3.8E-70 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20205 c33ede5aad91156e4682633fd45d54e5 153 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 149 4.4E-61 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20205 c33ede5aad91156e4682633fd45d54e5 153 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 12 150 2.5E-61 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20205 c33ede5aad91156e4682633fd45d54e5 153 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 153 32.103 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS20205 c33ede5aad91156e4682633fd45d54e5 153 SUPERFAMILY SSF52121 3 153 1.44E-65 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Gferi_RS09180 863c1faacb8ad47aa445beb62a8ecfd0 414 SUPERFAMILY SSF111369 68 152 9.81E-6 T 11-11-2016 Gferi_RS09180 863c1faacb8ad47aa445beb62a8ecfd0 414 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 218 341 6.9E-9 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS09180 863c1faacb8ad47aa445beb62a8ecfd0 414 Gene3D G3DSA:2.40.50.100 70 102 7.8E-9 T 11-11-2016 Gferi_RS09180 863c1faacb8ad47aa445beb62a8ecfd0 414 Gene3D G3DSA:2.40.50.100 224 256 7.8E-9 T 11-11-2016 Gferi_RS09180 863c1faacb8ad47aa445beb62a8ecfd0 414 Pfam PF13533 Biotin-lipoyl like 69 113 3.2E-8 T 11-11-2016 Gferi_RS00185 07c73ccebde0e3b8a3b3594d794b4b84 210 TIGRFAM TIGR02831 spo_II_M: stage II sporulation protein M 8 204 1.9E-58 T 11-11-2016 IPR014196 Stage II sporulation protein M Gferi_RS00185 07c73ccebde0e3b8a3b3594d794b4b84 210 PIRSF PIRSF038973 1 210 2.0E-67 T 11-11-2016 IPR014196 Stage II sporulation protein M Gferi_RS00185 07c73ccebde0e3b8a3b3594d794b4b84 210 Pfam PF01944 Stage II sporulation protein M 24 200 3.3E-25 T 11-11-2016 IPR002798 Stage II sporulation protein M-like Gferi_RS00045 aab5b5d08d5e1562a20623e4dbed94a6 204 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 11-11-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 Gferi_RS00045 aab5b5d08d5e1562a20623e4dbed94a6 204 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 197 2.1E-65 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 Gferi_RS00045 aab5b5d08d5e1562a20623e4dbed94a6 204 PIRSF PIRSF000709 2 198 5.8E-16 T 11-11-2016 Gferi_RS00045 aab5b5d08d5e1562a20623e4dbed94a6 204 SUPERFAMILY SSF53254 1 201 4.98E-63 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS00045 aab5b5d08d5e1562a20623e4dbed94a6 204 Gene3D G3DSA:3.40.50.1240 1 203 2.1E-64 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS00045 aab5b5d08d5e1562a20623e4dbed94a6 204 SMART SM00855 3 157 5.6E-20 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 Gferi_RS09750 6b00bff62b8935661004a5d20f260c30 689 SUPERFAMILY SSF53067 3 79 1.22E-8 T 11-11-2016 Gferi_RS09750 6b00bff62b8935661004a5d20f260c30 689 SUPERFAMILY SSF53067 261 305 1.22E-8 T 11-11-2016 Gferi_RS09750 6b00bff62b8935661004a5d20f260c30 689 Gene3D G3DSA:3.30.420.40 4 74 4.1E-4 T 11-11-2016 Gferi_RS09750 6b00bff62b8935661004a5d20f260c30 689 Gene3D G3DSA:3.30.420.40 212 299 4.1E-4 T 11-11-2016 Gferi_RS09750 6b00bff62b8935661004a5d20f260c30 689 Pfam PF01968 Hydantoinase/oxoprolinase 203 489 3.5E-100 T 11-11-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Gferi_RS09750 6b00bff62b8935661004a5d20f260c30 689 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 5 182 3.6E-54 T 11-11-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Gferi_RS13645 094b89290fe7749ab0f368ac75aa873c 95 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 22.235 T 11-11-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 Gferi_RS13645 094b89290fe7749ab0f368ac75aa873c 95 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 1.1E-30 T 11-11-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13645 094b89290fe7749ab0f368ac75aa873c 95 Pfam PF01250 Ribosomal protein S6 3 90 2.1E-31 T 11-11-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS13645 094b89290fe7749ab0f368ac75aa873c 95 Gene3D G3DSA:3.30.70.60 1 94 1.5E-36 T 11-11-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Gferi_RS13645 094b89290fe7749ab0f368ac75aa873c 95 SUPERFAMILY SSF54995 1 94 3.92E-33 T 11-11-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 Gene3D G3DSA:3.30.70.100 4 89 2.3E-25 T 11-11-2016 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 8 746 4.6E-251 T 11-11-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 SUPERFAMILY SSF55821 175 390 3.97E-47 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 Pfam PF01300 Telomere recombination 210 382 1.7E-51 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 Gene3D G3DSA:3.30.420.40 655 717 5.1E-4 T 11-11-2016 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 PIRSF PIRSF006256 1 756 5.0E-302 T 11-11-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 SUPERFAMILY SSF53067 478 559 3.52E-5 T 11-11-2016 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 SUPERFAMILY SSF53067 657 730 3.52E-5 T 11-11-2016 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 Pfam PF07503 HypF finger 158 190 3.8E-18 T 11-11-2016 IPR011125 Zinc finger, HypF-type GO:0008270 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 Pfam PF07503 HypF finger 108 141 2.7E-14 T 11-11-2016 IPR011125 Zinc finger, HypF-type GO:0008270 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 11-11-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 SUPERFAMILY SSF54975 3 89 2.09E-24 T 11-11-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 Gene3D G3DSA:3.90.870.10 201 373 1.5E-42 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain Gferi_RS20130 72f878d78c2328e893e24968ba876c8d 759 Pfam PF00708 Acylphosphatase 4 89 2.1E-22 T 11-11-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Gferi_RS19530 601aef0f40feecedf0a35ee3e20c3826 342 Gene3D G3DSA:3.30.200.20 5 98 5.6E-21 T 11-11-2016 Gferi_RS19530 601aef0f40feecedf0a35ee3e20c3826 342 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 22 336 3.5E-93 T 11-11-2016 IPR014255 Spore coat protein CotS Gferi_RS19530 601aef0f40feecedf0a35ee3e20c3826 342 SUPERFAMILY SSF56112 6 337 5.69E-41 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS19530 601aef0f40feecedf0a35ee3e20c3826 342 Pfam PF01636 Phosphotransferase enzyme family 33 276 5.1E-7 T 11-11-2016 IPR002575 Aminoglycoside phosphotransferase Gferi_RS19530 601aef0f40feecedf0a35ee3e20c3826 342 Gene3D G3DSA:3.90.1200.10 100 327 7.6E-55 T 11-11-2016 Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 SMART SM00387 170 281 3.0E-6 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 Gene3D G3DSA:3.30.565.10 148 281 9.5E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 76 129 4.8E-12 T 11-11-2016 Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 SUPERFAMILY SSF55874 146 279 6.02E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 PRINTS PR00344 Bacterial sensor protein C-terminal signature 241 259 2.4E-6 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 PRINTS PR00344 Bacterial sensor protein C-terminal signature 265 278 2.4E-6 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 PRINTS PR00344 Bacterial sensor protein C-terminal signature 229 239 2.4E-6 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 Gene3D G3DSA:1.10.287.130 73 125 5.5E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS02815 b24f2ee3c6f1b58b2832887bbe8f5c49 300 Pfam PF14501 GHKL domain 170 268 2.1E-15 T 11-11-2016 IPR032834 Sensor histidine kinase NatK, C-terminal domain Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 Gene3D G3DSA:3.10.290.10 313 407 6.2E-29 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 Pfam PF00579 tRNA synthetases class I (W and Y) 30 319 3.1E-80 T 11-11-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 407 2.0E-131 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 214 226 3.7E-25 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 181 203 3.7E-25 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 44 66 3.7E-25 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 160 175 3.7E-25 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 SUPERFAMILY SSF55174 301 406 9.68E-18 T 11-11-2016 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 Gene3D G3DSA:1.10.240.10 231 312 1.4E-40 T 11-11-2016 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 SUPERFAMILY SSF52374 3 319 5.88E-98 T 11-11-2016 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 50 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 2 407 42.693 T 11-11-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 Pfam PF01479 S4 domain 346 387 1.7E-9 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS15560 d5772e5e322d0092117990d56201f89a 408 Gene3D G3DSA:3.40.50.620 2 230 3.2E-94 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS14610 d2414dcae69a826403cb5e1338fe656d 84 Pfam PF10779 Haemolysin XhlA 12 78 6.4E-17 T 11-11-2016 IPR019715 Haemolysin XhlA Gferi_RS26450 1d6f4f39fb740b30c9510c9c163822f9 468 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 10 462 4.0E-189 T 11-11-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Gferi_RS26450 1d6f4f39fb740b30c9510c9c163822f9 468 Gene3D G3DSA:3.40.640.10 133 319 1.2E-30 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS26450 1d6f4f39fb740b30c9510c9c163822f9 468 Pfam PF12390 Selenocysteine synthase N terminal 10 46 2.2E-7 T 11-11-2016 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Gferi_RS26450 1d6f4f39fb740b30c9510c9c163822f9 468 SUPERFAMILY SSF53383 80 467 1.24E-49 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS26450 1d6f4f39fb740b30c9510c9c163822f9 468 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 468 205.834 T 11-11-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Gferi_RS26450 1d6f4f39fb740b30c9510c9c163822f9 468 Pfam PF03841 L-seryl-tRNA selenium transferase 86 450 3.8E-163 T 11-11-2016 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Gferi_RS01780 77976d3b7d5aa70321bb06f844ac7cc8 224 SUPERFAMILY SSF57716 89 119 9.41E-7 T 11-11-2016 Gferi_RS01780 77976d3b7d5aa70321bb06f844ac7cc8 224 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 87 116 3.9E-11 T 11-11-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 Gferi_RS01780 77976d3b7d5aa70321bb06f844ac7cc8 224 TIGRFAM TIGR02890 bacill_yteA: regulatory protein, yteA family 5 167 1.9E-53 T 11-11-2016 IPR014240 Regulatory protein, YteA family Gferi_RS01780 77976d3b7d5aa70321bb06f844ac7cc8 224 SUPERFAMILY SSF109635 1 88 3.53E-15 T 11-11-2016 Gferi_RS17650 c3a56492b9314b9ea37f944eaa2c55fb 385 Gene3D G3DSA:3.20.20.140 63 382 5.0E-36 T 11-11-2016 Gferi_RS17650 c3a56492b9314b9ea37f944eaa2c55fb 385 SUPERFAMILY SSF51556 57 347 2.88E-41 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS17650 c3a56492b9314b9ea37f944eaa2c55fb 385 Gene3D G3DSA:2.30.40.10 3 62 1.0E-13 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS17650 c3a56492b9314b9ea37f944eaa2c55fb 385 Pfam PF01979 Amidohydrolase family 54 378 5.9E-18 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS17650 c3a56492b9314b9ea37f944eaa2c55fb 385 SUPERFAMILY SSF51338 1 58 8.31E-20 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS17650 c3a56492b9314b9ea37f944eaa2c55fb 385 SUPERFAMILY SSF51338 347 382 8.31E-20 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS17375 53a8fdaa9ecf03d65b016258f6dd4d37 156 PIRSF PIRSF002122 4 156 2.9E-59 T 11-11-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 Gferi_RS17375 53a8fdaa9ecf03d65b016258f6dd4d37 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.1E-70 T 11-11-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS17375 53a8fdaa9ecf03d65b016258f6dd4d37 156 SUPERFAMILY SSF47973 7 149 1.19E-62 T 11-11-2016 IPR023798 Ribosomal protein S7 domain Gferi_RS17375 53a8fdaa9ecf03d65b016258f6dd4d37 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-11-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS17375 53a8fdaa9ecf03d65b016258f6dd4d37 156 Gene3D G3DSA:1.10.455.10 7 156 1.3E-67 T 11-11-2016 IPR023798 Ribosomal protein S7 domain Gferi_RS17375 53a8fdaa9ecf03d65b016258f6dd4d37 156 Pfam PF00177 Ribosomal protein S7p/S5e 2 149 2.7E-68 T 11-11-2016 IPR023798 Ribosomal protein S7 domain Gferi_RS17375 53a8fdaa9ecf03d65b016258f6dd4d37 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.828 T 11-11-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Gferi_RS11370 b7660da2e84ab35e827dd1f91f41888d 300 Pfam PF00551 Formyl transferase 46 167 4.0E-16 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS11370 b7660da2e84ab35e827dd1f91f41888d 300 SUPERFAMILY SSF53328 5 202 4.32E-39 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS11370 b7660da2e84ab35e827dd1f91f41888d 300 Gene3D G3DSA:3.40.50.170 4 201 4.7E-35 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS11370 b7660da2e84ab35e827dd1f91f41888d 300 Gene3D G3DSA:3.10.25.10 206 283 2.6E-16 T 11-11-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS11370 b7660da2e84ab35e827dd1f91f41888d 300 SUPERFAMILY SSF50486 205 287 8.48E-17 T 11-11-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 Gferi_RS11370 b7660da2e84ab35e827dd1f91f41888d 300 Pfam PF02911 Formyl transferase, C-terminal domain 205 285 5.1E-16 T 11-11-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS20705 cdbb14c91cca73680da08dba733718b6 121 SUPERFAMILY SSF52833 28 118 1.04E-18 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20705 cdbb14c91cca73680da08dba733718b6 121 Gene3D G3DSA:3.40.30.10 28 119 4.1E-23 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS25590 dbe47d0150944d91f0ec61d0a4a86fee 214 Gene3D G3DSA:3.40.225.10 2 213 7.3E-64 T 11-11-2016 IPR001303 Class II aldolase/adducin N-terminal Gferi_RS25590 dbe47d0150944d91f0ec61d0a4a86fee 214 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 184 3.1E-46 T 11-11-2016 IPR001303 Class II aldolase/adducin N-terminal Gferi_RS25590 dbe47d0150944d91f0ec61d0a4a86fee 214 SUPERFAMILY SSF53639 3 212 3.73E-63 T 11-11-2016 IPR001303 Class II aldolase/adducin N-terminal Gferi_RS25590 dbe47d0150944d91f0ec61d0a4a86fee 214 SMART SM01007 8 184 6.7E-62 T 11-11-2016 IPR001303 Class II aldolase/adducin N-terminal Gferi_RS01355 d038195135ed3d637cd91ae25b48cde7 268 SUPERFAMILY SSF53098 105 262 3.04E-36 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS01355 d038195135ed3d637cd91ae25b48cde7 268 Pfam PF13276 HTH-like domain 39 84 2.7E-8 T 11-11-2016 IPR025948 HTH-like domain Gferi_RS01355 d038195135ed3d637cd91ae25b48cde7 268 Gene3D G3DSA:3.30.420.10 107 262 3.6E-34 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS01355 d038195135ed3d637cd91ae25b48cde7 268 Pfam PF00665 Integrase core domain 112 223 4.5E-24 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 Gferi_RS23590 ca10b3b7ef8376ff90ac84b14612fca9 226 SUPERFAMILY SSF52096 3 179 1.28E-49 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS23590 ca10b3b7ef8376ff90ac84b14612fca9 226 Pfam PF00574 Clp protease 16 179 4.1E-32 T 11-11-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Gferi_RS23590 ca10b3b7ef8376ff90ac84b14612fca9 226 Gene3D G3DSA:3.90.226.10 9 183 1.4E-46 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS23590 ca10b3b7ef8376ff90ac84b14612fca9 226 PRINTS PR00127 Clp protease catalytic subunit P signature 49 69 4.5E-9 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS23590 ca10b3b7ef8376ff90ac84b14612fca9 226 PRINTS PR00127 Clp protease catalytic subunit P signature 156 175 4.5E-9 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS23590 ca10b3b7ef8376ff90ac84b14612fca9 226 PRINTS PR00127 Clp protease catalytic subunit P signature 80 97 4.5E-9 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Gferi_RS20940 50e55973a46182873932e56ec951b778 356 SMART SM00471 123 259 1.3E-11 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS20940 50e55973a46182873932e56ec951b778 356 Pfam PF01966 HD domain 127 250 3.5E-21 T 11-11-2016 IPR006674 HD domain Gferi_RS20940 50e55973a46182873932e56ec951b778 356 Gene3D G3DSA:1.10.3210.10 122 287 1.8E-23 T 11-11-2016 IPR006674 HD domain Gferi_RS20940 50e55973a46182873932e56ec951b778 356 TIGRFAM TIGR00277 HDIG: HDIG domain 125 217 7.4E-8 T 11-11-2016 IPR006675 HDIG domain Gferi_RS20940 50e55973a46182873932e56ec951b778 356 SUPERFAMILY SSF109604 122 287 1.38E-36 T 11-11-2016 Gferi_RS06335 50428966646e6e29f2e23ad84e843555 257 Gene3D G3DSA:3.40.50.300 2 253 2.6E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06335 50428966646e6e29f2e23ad84e843555 257 PIRSF PIRSF005647 3 257 3.2E-65 T 11-11-2016 IPR014433 Nickel insertion ATPase/GTPase (CO dehydrogenase maturation factor), CooC type Gferi_RS06335 50428966646e6e29f2e23ad84e843555 257 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 222 1.1E-23 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Gferi_RS06335 50428966646e6e29f2e23ad84e843555 257 SUPERFAMILY SSF52540 1 253 1.19E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 Pfam PF02780 Transketolase, C-terminal domain 497 618 4.0E-29 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 ProSitePatterns PS00801 Transketolase signature 1. 33 52 - T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 SUPERFAMILY SSF52922 491 628 1.7E-31 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 Gene3D G3DSA:3.40.50.920 497 627 1.8E-35 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 SUPERFAMILY SSF52518 317 506 2.1E-56 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 SMART SM00861 320 483 3.5E-65 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 Gene3D G3DSA:3.40.50.970 23 198 4.7E-76 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 Gene3D G3DSA:3.40.50.970 243 335 4.7E-76 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 Pfam PF02779 Transketolase, pyrimidine binding domain 320 480 5.0E-39 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 8 283 7.5E-124 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 9 627 5.5E-256 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 ProSitePatterns PS00802 Transketolase signature 2. 426 442 - T 11-11-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 7 628 45.889 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 Gene3D G3DSA:3.40.50.970 336 487 3.0E-36 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 SUPERFAMILY SSF52518 5 198 6.94E-83 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS00245 f6bea765cf2a5b46fac59ed3146004d0 629 SUPERFAMILY SSF52518 244 382 6.94E-83 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS07485 e4f62f19f9a498493938be5e967e36ce 126 SUPERFAMILY SSF55856 48 114 7.46E-17 T 11-11-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain Gferi_RS07485 e4f62f19f9a498493938be5e967e36ce 126 Pfam PF00173 Cytochrome b5-like Heme/Steroid binding domain 54 124 6.9E-14 T 11-11-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain Gferi_RS07485 e4f62f19f9a498493938be5e967e36ce 126 Gene3D G3DSA:3.10.120.10 50 111 3.6E-17 T 11-11-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain Gferi_RS07485 e4f62f19f9a498493938be5e967e36ce 126 SMART SM01117 53 125 1.6E-14 T 11-11-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 443 450 - T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 PRINTS PR00045 Sigma-54 factor signature 175 192 1.7E-27 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 PRINTS PR00045 Sigma-54 factor signature 364 376 1.7E-27 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 PRINTS PR00045 Sigma-54 factor signature 438 456 1.7E-27 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 PRINTS PR00045 Sigma-54 factor signature 380 391 1.7E-27 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 PIRSF PIRSF000774 1 464 5.3E-161 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 Pfam PF04963 Sigma-54 factor, core binding domain 102 290 1.1E-57 T 11-11-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 462 2.8E-142 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 352 371 - T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 Gene3D G3DSA:1.10.260.40 352 376 4.2E-6 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 Pfam PF04552 Sigma-54, DNA binding domain 305 463 8.0E-67 T 11-11-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding Gferi_RS24450 8de33a2a04bb4be0a4e888c803c63efe 464 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 7 51 2.5E-16 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00900 37f49330a65a7f318fbdd3e601053d98 174 Pfam PF04347 Flagellar biosynthesis protein, FliO 42 128 5.3E-12 T 11-11-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 Gferi_RS11280 ced58500213eb40e3b17a61011f16d2d 152 Pfam PF04892 VanZ like family 17 147 1.0E-26 T 11-11-2016 IPR006976 VanZ-like Gferi_RS11280 ced58500213eb40e3b17a61011f16d2d 152 PIRSF PIRSF019083 6 151 1.5E-41 T 11-11-2016 IPR016747 Phosphotransbutyrylase Gferi_RS09755 3fbb83268ce83ce8c22e51262d959c19 263 Gene3D G3DSA:3.20.20.150 2 256 3.1E-52 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS09755 3fbb83268ce83ce8c22e51262d959c19 263 Pfam PF01261 Xylose isomerase-like TIM barrel 9 211 3.0E-32 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS09755 3fbb83268ce83ce8c22e51262d959c19 263 SUPERFAMILY SSF51658 2 257 3.4E-50 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS20880 4ba43674f85b048141fea4bba287d406 790 PIRSF PIRSF000460 2 790 3.7E-218 T 11-11-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Gferi_RS20880 4ba43674f85b048141fea4bba287d406 790 Gene3D G3DSA:3.40.50.2000 450 770 1.2E-125 T 11-11-2016 Gferi_RS20880 4ba43674f85b048141fea4bba287d406 790 SUPERFAMILY SSF53756 2 789 5.81E-292 T 11-11-2016 Gferi_RS20880 4ba43674f85b048141fea4bba287d406 790 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 3 785 0.0 T 11-11-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Gferi_RS20880 4ba43674f85b048141fea4bba287d406 790 Gene3D G3DSA:3.40.50.2000 2 449 6.1E-186 T 11-11-2016 Gferi_RS20880 4ba43674f85b048141fea4bba287d406 790 Pfam PF00343 Carbohydrate phosphorylase 89 785 0.0 T 11-11-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Gferi_RS20880 4ba43674f85b048141fea4bba287d406 790 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 625 637 - T 11-11-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Gferi_RS16320 bf387b2f3b81c92f2b77ac35622a73e1 214 Pfam PF02607 B12 binding domain 7 73 1.7E-6 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16320 bf387b2f3b81c92f2b77ac35622a73e1 214 SMART SM01018 1 78 7.7E-4 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16320 bf387b2f3b81c92f2b77ac35622a73e1 214 Pfam PF02310 B12 binding domain 91 182 4.2E-25 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16320 bf387b2f3b81c92f2b77ac35622a73e1 214 SUPERFAMILY SSF47644 4 73 2.35E-9 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16320 bf387b2f3b81c92f2b77ac35622a73e1 214 SUPERFAMILY SSF52242 79 210 2.35E-37 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16320 bf387b2f3b81c92f2b77ac35622a73e1 214 Gene3D G3DSA:1.10.1240.10 4 71 4.6E-7 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS16320 bf387b2f3b81c92f2b77ac35622a73e1 214 Gene3D G3DSA:3.40.50.280 84 212 1.8E-41 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS25305 1adda79983b7a90fc059b72b85a7e053 375 SUPERFAMILY SSF52096 267 343 4.62E-65 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS25305 1adda79983b7a90fc059b72b85a7e053 375 SUPERFAMILY SSF52096 2 189 4.62E-65 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS25305 1adda79983b7a90fc059b72b85a7e053 375 Gene3D G3DSA:3.90.226.10 272 341 4.8E-53 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS25305 1adda79983b7a90fc059b72b85a7e053 375 Gene3D G3DSA:3.90.226.10 4 199 4.8E-53 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS25305 1adda79983b7a90fc059b72b85a7e053 375 Pfam PF16113 Enoyl-CoA hydratase/isomerase 15 357 2.9E-118 T 11-11-2016 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 Gferi_RS10765 d47e74286f9d0138a11482f13ad95a9e 149 SUPERFAMILY SSF141457 1 143 3.66E-49 T 11-11-2016 IPR024046 Flagellar assembly factor FliW domain Gferi_RS10765 d47e74286f9d0138a11482f13ad95a9e 149 Gene3D G3DSA:2.30.290.10 1 147 1.3E-55 T 11-11-2016 IPR024046 Flagellar assembly factor FliW domain Gferi_RS10765 d47e74286f9d0138a11482f13ad95a9e 149 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 17 142 26.592 T 11-11-2016 IPR003775 Flagellar assembly factor FliW GO:0044780 Gferi_RS10765 d47e74286f9d0138a11482f13ad95a9e 149 Pfam PF02623 FliW protein 19 139 4.7E-42 T 11-11-2016 IPR003775 Flagellar assembly factor FliW GO:0044780 Gferi_RS25920 5208d8672647e676377ed5ab987f05a8 313 SUPERFAMILY SSF51261 187 311 9.42E-56 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS25920 5208d8672647e676377ed5ab987f05a8 313 Gene3D G3DSA:2.70.70.10 164 312 5.9E-53 T 11-11-2016 Gferi_RS25920 5208d8672647e676377ed5ab987f05a8 313 Pfam PF01551 Peptidase family M23 213 307 6.9E-35 T 11-11-2016 IPR016047 Peptidase M23 Gferi_RS18165 94668239f2491c257036b084488697f2 376 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 38 374 4.1E-60 T 11-11-2016 IPR010327 FldB/FldC dehydratase alpha/beta subunit Gferi_RS00325 8ea97582ec009d3b47732d4ea696c53f 128 TIGRFAM TIGR02849 spore_III_AD: stage III sporulation protein AD 27 127 6.9E-35 T 11-11-2016 IPR014211 Stage III sporulation protein AD Gferi_RS00325 8ea97582ec009d3b47732d4ea696c53f 128 Pfam PF06686 Stage III sporulation protein AC/AD protein family 71 126 3.0E-21 T 11-11-2016 IPR025664 Stage III sporulation protein AC/AD family Gferi_RS00325 8ea97582ec009d3b47732d4ea696c53f 128 Pfam PF06686 Stage III sporulation protein AC/AD protein family 3 55 6.7E-16 T 11-11-2016 IPR025664 Stage III sporulation protein AC/AD family Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 SUPERFAMILY SSF53649 11 458 1.31E-124 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 Pfam PF00245 Alkaline phosphatase 34 455 4.5E-102 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 SMART SM00098 35 456 2.1E-110 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 PRINTS PR00113 Alkaline phosphatase signature 34 54 1.8E-37 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 PRINTS PR00113 Alkaline phosphatase signature 133 153 1.8E-37 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 PRINTS PR00113 Alkaline phosphatase signature 248 277 1.8E-37 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 PRINTS PR00113 Alkaline phosphatase signature 177 187 1.8E-37 T 11-11-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 SUPERFAMILY SSF55383 464 536 9.15E-5 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS13075 92a6aaa9bdf43eb6d376d41c05a26a31 540 Gene3D G3DSA:3.40.720.10 15 465 1.0E-134 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS09130 15498bdd54c8c62cfb33d0f30a71f70f 604 Gene3D G3DSA:1.10.287.950 343 560 1.8E-35 T 11-11-2016 Gferi_RS09130 15498bdd54c8c62cfb33d0f30a71f70f 604 SMART SM00283 328 589 3.0E-27 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS09130 15498bdd54c8c62cfb33d0f30a71f70f 604 Pfam PF07700 Haem-NO-binding 2 159 1.8E-39 T 11-11-2016 IPR011644 Heme-NO binding GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 Gferi_RS09130 15498bdd54c8c62cfb33d0f30a71f70f 604 SUPERFAMILY SSF111126 1 174 4.45E-40 T 11-11-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain Gferi_RS09130 15498bdd54c8c62cfb33d0f30a71f70f 604 SUPERFAMILY SSF58104 334 602 6.15E-51 T 11-11-2016 Gferi_RS09130 15498bdd54c8c62cfb33d0f30a71f70f 604 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 396 587 1.0E-33 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS09130 15498bdd54c8c62cfb33d0f30a71f70f 604 Gene3D G3DSA:3.90.1520.10 1 184 2.4E-51 T 11-11-2016 Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 Gene3D G3DSA:3.20.20.120 136 335 1.0E-59 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 Pfam PF13378 Enolase C-terminal domain-like 147 356 8.1E-37 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 Gene3D G3DSA:3.30.390.10 1 135 2.6E-41 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 SUPERFAMILY SSF54826 1 125 2.02E-30 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 10 328 5.6E-107 T 11-11-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 SMART SM00922 142 234 1.1E-16 T 11-11-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 SUPERFAMILY SSF51604 115 364 2.1E-54 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 Hamap MF_01933 o-succinylbenzoate synthase [menC]. 1 361 40.714 T 11-11-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22540 66d42834f617f4683eee4a45d9761538 369 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 6 124 6.7E-15 T 11-11-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Gferi_RS23130 7bd764ab37c03a846ef42be5b111143e 164 Gene3D G3DSA:3.30.70.860 98 163 2.3E-28 T 11-11-2016 Gferi_RS23130 7bd764ab37c03a846ef42be5b111143e 164 Gene3D G3DSA:3.30.70.990 12 97 3.2E-34 T 11-11-2016 Gferi_RS23130 7bd764ab37c03a846ef42be5b111143e 164 SUPERFAMILY SSF89963 6 90 1.83E-32 T 11-11-2016 IPR007551 Protein of unknown function DUF520 Gferi_RS23130 7bd764ab37c03a846ef42be5b111143e 164 Pfam PF04461 Protein of unknown function (DUF520) 6 163 4.0E-64 T 11-11-2016 IPR007551 Protein of unknown function DUF520 Gferi_RS23130 7bd764ab37c03a846ef42be5b111143e 164 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 4 164 26.579 T 11-11-2016 IPR007551 Protein of unknown function DUF520 Gferi_RS23130 7bd764ab37c03a846ef42be5b111143e 164 SUPERFAMILY SSF89963 92 163 3.66E-25 T 11-11-2016 IPR007551 Protein of unknown function DUF520 Gferi_RS22035 32cfbf8e0e08110ff5c4601ae77efe77 130 Pfam PF04304 Protein of unknown function (DUF454) 3 117 1.0E-35 T 11-11-2016 IPR007401 Protein of unknown function DUF454 Gferi_RS22035 32cfbf8e0e08110ff5c4601ae77efe77 130 PIRSF PIRSF016789 2 124 6.3E-37 T 11-11-2016 IPR007401 Protein of unknown function DUF454 Gferi_RS16135 e91ae9d045a5b3e9648fb55ad30c13e5 406 Pfam PF03616 Sodium/glutamate symporter 9 374 4.7E-128 T 11-11-2016 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 Gferi_RS16135 e91ae9d045a5b3e9648fb55ad30c13e5 406 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 10 404 3.3E-117 T 11-11-2016 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 Gferi_RS01290 94b1146edcc96009b7b8d3bb559ac573 134 Pfam PF07508 Recombinase 58 128 2.9E-15 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS15360 ed1c8229edca878c7073b78adb0ff74e 163 SUPERFAMILY SSF50475 11 132 8.61E-18 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS15360 ed1c8229edca878c7073b78adb0ff74e 163 Gene3D G3DSA:2.30.110.10 11 132 1.1E-15 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS15360 ed1c8229edca878c7073b78adb0ff74e 163 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 10 92 4.5E-8 T 11-11-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 Gferi_RS20885 acf0642d2620905aab5d9d9b40aa27c4 455 Gene3D G3DSA:3.40.190.10 63 180 6.1E-11 T 11-11-2016 Gferi_RS20885 acf0642d2620905aab5d9d9b40aa27c4 455 Pfam PF13416 Bacterial extracellular solute-binding protein 74 383 2.2E-29 T 11-11-2016 Gferi_RS20885 acf0642d2620905aab5d9d9b40aa27c4 455 Gene3D G3DSA:3.40.190.10 181 381 3.3E-32 T 11-11-2016 Gferi_RS20885 acf0642d2620905aab5d9d9b40aa27c4 455 SUPERFAMILY SSF53850 52 441 1.49E-57 T 11-11-2016 Gferi_RS13595 d9f45dca062fde4a50aa90e237fcbdca 86 Pfam PF11823 Protein of unknown function (DUF3343) 7 68 7.4E-18 T 11-11-2016 IPR021778 Protein of unknown function DUF3343 Gferi_RS14595 e5eac01efde43130cb7556c46b01849d 194 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 14 157 7.1E-36 T 11-11-2016 IPR018755 Bacteriophage Mu, Gp48 Gferi_RS08925 acdfa0f62c9c6c60d9e1afee6dd32459 205 Gene3D G3DSA:3.40.50.1000 62 195 1.2E-6 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS08925 acdfa0f62c9c6c60d9e1afee6dd32459 205 Pfam PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 7 193 1.9E-13 T 11-11-2016 IPR010708 5'(3')-deoxyribonucleotidase GO:0008253|GO:0009264 Reactome: R-HSA-73621 Gferi_RS08925 acdfa0f62c9c6c60d9e1afee6dd32459 205 SUPERFAMILY SSF56784 9 194 4.13E-9 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS02790 c3982edeee7a71b94e949fe58eedf7f8 181 SUPERFAMILY SSF55729 1 175 6.57E-18 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02790 c3982edeee7a71b94e949fe58eedf7f8 181 Gene3D G3DSA:3.40.630.30 2 145 1.3E-18 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02790 c3982edeee7a71b94e949fe58eedf7f8 181 Pfam PF13508 Acetyltransferase (GNAT) domain 62 132 3.5E-10 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 Gene3D G3DSA:3.30.990.10 3 179 2.3E-79 T 11-11-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 Gene3D G3DSA:3.30.70.670 182 297 1.5E-50 T 11-11-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 SUPERFAMILY SSF55116 181 297 4.45E-49 T 11-11-2016 IPR022384 Formiminotransferase subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 Pfam PF07837 Formiminotransferase domain, N-terminal subdomain 4 179 6.2E-78 T 11-11-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 Pfam PF02971 Formiminotransferase domain 182 288 6.8E-28 T 11-11-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 SMART SM01222 3 180 1.1E-118 T 11-11-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 TIGRFAM TIGR02024 FtcD: glutamate formiminotransferase 1 297 2.6E-150 T 11-11-2016 IPR004227 Formiminotransferase catalytic domain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 SUPERFAMILY SSF55116 3 179 8.37E-73 T 11-11-2016 IPR022384 Formiminotransferase subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS16130 740f025e05b4f21b9ab640b38d22ab53 298 SMART SM01221 181 295 4.0E-76 T 11-11-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS07135 a02f47bdf41d42a908550b8b93990b11 450 Pfam PF13533 Biotin-lipoyl like 76 112 4.3E-6 T 11-11-2016 Gferi_RS07135 a02f47bdf41d42a908550b8b93990b11 450 Gene3D G3DSA:2.40.50.100 242 267 1.6E-8 T 11-11-2016 Gferi_RS07135 a02f47bdf41d42a908550b8b93990b11 450 Gene3D G3DSA:2.40.50.100 64 96 1.6E-8 T 11-11-2016 Gferi_RS07135 a02f47bdf41d42a908550b8b93990b11 450 Pfam PF13437 HlyD family secretion protein 250 330 6.4E-13 T 11-11-2016 Gferi_RS21900 04411fbaf46f0fccbc034099f43bb7f9 403 SUPERFAMILY SSF111369 51 172 1.06E-8 T 11-11-2016 Gferi_RS21900 04411fbaf46f0fccbc034099f43bb7f9 403 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 318 1.8E-25 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS21900 04411fbaf46f0fccbc034099f43bb7f9 403 SUPERFAMILY SSF111369 210 320 1.09E-9 T 11-11-2016 Gferi_RS21900 04411fbaf46f0fccbc034099f43bb7f9 403 Gene3D G3DSA:2.40.50.100 212 244 2.0E-15 T 11-11-2016 Gferi_RS21900 04411fbaf46f0fccbc034099f43bb7f9 403 Gene3D G3DSA:2.40.50.100 63 96 2.0E-15 T 11-11-2016 Gferi_RS21900 04411fbaf46f0fccbc034099f43bb7f9 403 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 202 398 1.4E-43 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 Gferi_RS07600 219debc2c1bb6ad110f74f7235466922 128 SMART SM00418 32 110 2.4E-20 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS07600 219debc2c1bb6ad110f74f7235466922 128 Pfam PF01022 Bacterial regulatory protein, arsR family 40 85 4.4E-10 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS07600 219debc2c1bb6ad110f74f7235466922 128 Gene3D G3DSA:1.10.10.10 9 110 3.2E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07600 219debc2c1bb6ad110f74f7235466922 128 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 34 49 5.5E-14 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS07600 219debc2c1bb6ad110f74f7235466922 128 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 81 96 5.5E-14 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS07600 219debc2c1bb6ad110f74f7235466922 128 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 5.5E-14 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS07600 219debc2c1bb6ad110f74f7235466922 128 SUPERFAMILY SSF46785 17 110 5.05E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 SUPERFAMILY SSF54719 92 202 2.1E-47 T 11-11-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 Gene3D G3DSA:1.10.287.990 20 90 4.0E-29 T 11-11-2016 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 PIRSF PIRSF000349 1 204 5.2E-83 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 198 1.1E-42 T 11-11-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 90 2.8E-28 T 11-11-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 SUPERFAMILY SSF46609 1 91 9.69E-35 T 11-11-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 165 172 - T 11-11-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 PRINTS PR01703 Manganese superoxide dismutase signature 163 175 5.7E-26 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 5.7E-26 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 5.7E-26 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 5.7E-26 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS12305 ab4a2fe3d5ae44e5dae1bbd9db6a01a7 204 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 5.7E-26 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 Pfam PF03466 LysR substrate binding domain 89 296 6.1E-37 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 SUPERFAMILY SSF53850 90 304 6.83E-35 T 11-11-2016 Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 Gene3D G3DSA:3.40.190.10 201 255 1.2E-15 T 11-11-2016 Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 7.4E-18 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 Gene3D G3DSA:1.10.10.10 1 87 1.0E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 Gene3D G3DSA:3.40.190.10 88 200 4.2E-24 T 11-11-2016 Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.0E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.0E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.0E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS18220 575169bb53ec980da85257b5f1f759d1 310 SUPERFAMILY SSF46785 1 111 1.79E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08000 3fafd912d4e3a54401d9e37aa49898a8 173 SUPERFAMILY SSF46785 3 171 6.9E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08000 3fafd912d4e3a54401d9e37aa49898a8 173 Pfam PF03551 Transcriptional regulator PadR-like family 6 80 5.0E-10 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS08000 3fafd912d4e3a54401d9e37aa49898a8 173 Gene3D G3DSA:1.10.10.10 3 84 1.7E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16075 de1886f7c48967a8a249bc2b393e6b66 391 Gene3D G3DSA:3.40.640.10 45 252 4.7E-49 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS16075 de1886f7c48967a8a249bc2b393e6b66 391 SUPERFAMILY SSF53383 1 388 6.54E-90 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS16075 de1886f7c48967a8a249bc2b393e6b66 391 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 386 9.9E-140 T 11-11-2016 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 Gferi_RS16075 de1886f7c48967a8a249bc2b393e6b66 391 Gene3D G3DSA:3.90.1150.10 253 387 7.2E-35 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS16075 de1886f7c48967a8a249bc2b393e6b66 391 Pfam PF00155 Aminotransferase class I and II 30 382 4.8E-32 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS00570 0c52d8a416f57bc4207f1a04b30c75cb 166 SUPERFAMILY SSF54862 37 127 3.52E-12 T 11-11-2016 Gferi_RS00570 0c52d8a416f57bc4207f1a04b30c75cb 166 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 68 79 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS00570 0c52d8a416f57bc4207f1a04b30c75cb 166 Gene3D G3DSA:3.30.70.20 37 97 3.6E-11 T 11-11-2016 Gferi_RS00570 0c52d8a416f57bc4207f1a04b30c75cb 166 Pfam PF00037 4Fe-4S binding domain 62 83 1.7E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS02950 da834a6f47002d4b439e848d4b970dc6 132 Pfam PF10990 Protein of unknown function (DUF2809) 32 115 3.4E-26 T 11-11-2016 IPR021257 Protein of unknown function DUF2809 Gferi_RS24845 029204e117f7e13f9356866aafebaa00 187 Gene3D G3DSA:2.60.120.10 61 184 2.2E-45 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS24845 029204e117f7e13f9356866aafebaa00 187 SUPERFAMILY SSF51182 28 167 8.5E-25 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS24845 029204e117f7e13f9356866aafebaa00 187 Pfam PF07883 Cupin domain 86 161 1.2E-13 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS04700 d27e663b7e2956a0dd8900d1fb46817d 391 PRINTS PR00173 Glutamate-aspartate symporter signature 1 18 7.3E-5 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS04700 d27e663b7e2956a0dd8900d1fb46817d 391 PRINTS PR00173 Glutamate-aspartate symporter signature 273 299 7.3E-5 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS04700 d27e663b7e2956a0dd8900d1fb46817d 391 Pfam PF00375 Sodium:dicarboxylate symporter family 6 381 5.0E-76 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS04700 d27e663b7e2956a0dd8900d1fb46817d 391 SUPERFAMILY SSF118215 6 381 1.23E-78 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS04700 d27e663b7e2956a0dd8900d1fb46817d 391 Gene3D G3DSA:1.10.3860.10 2 385 3.2E-60 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS13385 cf4122ed0f10a2056889f4734f1cf154 362 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 281 4.4E-30 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS13385 cf4122ed0f10a2056889f4734f1cf154 362 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 361 3.0E-76 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 Gferi_RS13385 cf4122ed0f10a2056889f4734f1cf154 362 SUPERFAMILY SSF111369 56 285 2.88E-30 T 11-11-2016 Gferi_RS13385 cf4122ed0f10a2056889f4734f1cf154 362 Gene3D G3DSA:2.40.50.100 67 100 1.2E-15 T 11-11-2016 Gferi_RS13385 cf4122ed0f10a2056889f4734f1cf154 362 Gene3D G3DSA:2.40.50.100 175 208 1.2E-15 T 11-11-2016 Gferi_RS22640 d971448117242cff33bb5cfedb1bb7d8 96 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 86 1.3E-13 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS22640 d971448117242cff33bb5cfedb1bb7d8 96 Gene3D G3DSA:3.40.50.270 3 76 2.6E-11 T 11-11-2016 Gferi_RS22640 d971448117242cff33bb5cfedb1bb7d8 96 SUPERFAMILY SSF52794 3 91 1.2E-19 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 Gene3D G3DSA:3.30.450.20 240 358 6.0E-15 T 11-11-2016 Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 SUPERFAMILY SSF55874 449 564 6.16E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 474 565 2.2E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 SUPERFAMILY SSF55785 241 337 6.81E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 240 349 6.9E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 SMART SM00387 471 567 1.4E-7 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 Pfam PF16927 N-terminal 7TM region of histidine kinase 12 236 1.7E-56 T 11-11-2016 IPR031621 Histidine kinase, N-terminal 7TM region Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 Pfam PF07730 Histidine kinase 363 429 5.6E-13 T 11-11-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 Gene3D G3DSA:3.30.565.10 469 567 1.0E-10 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS04925 6ace5b3c03a7f764da434e029f38677e 569 Pfam PF08448 PAS fold 245 345 1.4E-10 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS22915 192f60653e482418e8bc60f7c979d522 398 Pfam PF01139 tRNA-splicing ligase RtcB 31 398 3.4E-109 T 11-11-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Gferi_RS22915 192f60653e482418e8bc60f7c979d522 398 SUPERFAMILY SSF103365 17 398 9.94E-112 T 11-11-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Gferi_RS26405 44b6585ef389ab1cfac5ee6aa3b8282a 332 Pfam PF01699 Sodium/calcium exchanger protein 6 146 1.9E-20 T 11-11-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Gferi_RS26405 44b6585ef389ab1cfac5ee6aa3b8282a 332 Pfam PF01699 Sodium/calcium exchanger protein 174 328 1.0E-25 T 11-11-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 Gferi_RS26405 44b6585ef389ab1cfac5ee6aa3b8282a 332 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 5 323 1.3E-61 T 11-11-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 Gferi_RS17310 9b2b0a4e8b71b78c5651760dc27a5367 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 11-11-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17310 9b2b0a4e8b71b78c5651760dc27a5367 49 SUPERFAMILY SSF57829 1 49 1.34E-19 T 11-11-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 Gferi_RS17310 9b2b0a4e8b71b78c5651760dc27a5367 49 Pfam PF00471 Ribosomal protein L33 3 49 2.0E-23 T 11-11-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17310 9b2b0a4e8b71b78c5651760dc27a5367 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 49 7.2E-21 T 11-11-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17310 9b2b0a4e8b71b78c5651760dc27a5367 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 19.313 T 11-11-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS11735 6588014d006d0daac31470ee11d6ea49 532 SUPERFAMILY SSF100950 276 515 7.41E-80 T 11-11-2016 Gferi_RS11735 6588014d006d0daac31470ee11d6ea49 532 PIRSF PIRSF000858 1 522 8.7E-237 T 11-11-2016 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 Gferi_RS11735 6588014d006d0daac31470ee11d6ea49 532 Gene3D G3DSA:3.40.810.20 274 513 2.1E-67 T 11-11-2016 Gferi_RS11735 6588014d006d0daac31470ee11d6ea49 532 Pfam PF01144 Coenzyme A transferase 6 241 3.9E-31 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS11735 6588014d006d0daac31470ee11d6ea49 532 SMART SM00882 280 488 9.7E-4 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS11735 6588014d006d0daac31470ee11d6ea49 532 SMART SM00882 5 242 2.9E-71 T 11-11-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 Gferi_RS11735 6588014d006d0daac31470ee11d6ea49 532 Gene3D G3DSA:3.40.1080.10 4 241 3.9E-72 T 11-11-2016 Gferi_RS11735 6588014d006d0daac31470ee11d6ea49 532 SUPERFAMILY SSF100950 4 252 8.37E-91 T 11-11-2016 Gferi_RS05565 80613009f8a6862ced9e27b3b9e77cde 552 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 460 471 - T 11-11-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS05565 80613009f8a6862ced9e27b3b9e77cde 552 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 14 551 2.3E-236 T 11-11-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS05565 80613009f8a6862ced9e27b3b9e77cde 552 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 119 129 - T 11-11-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS05565 80613009f8a6862ced9e27b3b9e77cde 552 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 551 46.576 T 11-11-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS05565 80613009f8a6862ced9e27b3b9e77cde 552 SUPERFAMILY SSF52016 372 551 8.63E-62 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS05565 80613009f8a6862ced9e27b3b9e77cde 552 Pfam PF00920 Dehydratase family 31 548 2.7E-225 T 11-11-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 Gferi_RS05565 80613009f8a6862ced9e27b3b9e77cde 552 SUPERFAMILY SSF143975 1 371 5.89E-139 T 11-11-2016 Gferi_RS19615 205c99635d2f18aa8af3656c8f85fc2d 154 SMART SM00530 4 60 9.9E-10 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS19615 205c99635d2f18aa8af3656c8f85fc2d 154 SUPERFAMILY SSF47413 2 65 2.25E-11 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19615 205c99635d2f18aa8af3656c8f85fc2d 154 Gene3D G3DSA:1.10.260.40 1 100 3.4E-14 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19615 205c99635d2f18aa8af3656c8f85fc2d 154 Pfam PF09388 Spo0E like sporulation regulatory protein 103 144 1.3E-9 T 11-11-2016 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 Gferi_RS19615 205c99635d2f18aa8af3656c8f85fc2d 154 SUPERFAMILY SSF140500 100 151 2.35E-9 T 11-11-2016 Gferi_RS19615 205c99635d2f18aa8af3656c8f85fc2d 154 Pfam PF01381 Helix-turn-helix 5 57 1.4E-8 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS09980 30321e91708464b2a8408d5c4779788b 300 SUPERFAMILY SSF55347 121 258 4.25E-39 T 11-11-2016 Gferi_RS09980 30321e91708464b2a8408d5c4779788b 300 Gene3D G3DSA:3.30.360.10 127 299 8.7E-61 T 11-11-2016 Gferi_RS09980 30321e91708464b2a8408d5c4779788b 300 Gene3D G3DSA:3.40.50.720 1 126 2.4E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09980 30321e91708464b2a8408d5c4779788b 300 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 119 1.6E-20 T 11-11-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 Gferi_RS09980 30321e91708464b2a8408d5c4779788b 300 SUPERFAMILY SSF51735 1 157 7.66E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS07565 00ceb503ee2f730c3c365613d9565533 515 Gene3D G3DSA:3.40.190.10 187 282 1.8E-29 T 11-11-2016 Gferi_RS07565 00ceb503ee2f730c3c365613d9565533 515 Gene3D G3DSA:3.90.76.10 52 186 7.2E-16 T 11-11-2016 Gferi_RS07565 00ceb503ee2f730c3c365613d9565533 515 SUPERFAMILY SSF53850 39 507 4.53E-99 T 11-11-2016 Gferi_RS07565 00ceb503ee2f730c3c365613d9565533 515 PIRSF PIRSF002741 1 515 2.4E-68 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS07565 00ceb503ee2f730c3c365613d9565533 515 Gene3D G3DSA:3.10.105.10 283 482 1.5E-39 T 11-11-2016 Gferi_RS07565 00ceb503ee2f730c3c365613d9565533 515 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 428 9.3E-63 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS04560 ef36a5056532d1535a298979ec0381b9 211 Pfam PF02607 B12 binding domain 6 78 2.9E-18 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS04560 ef36a5056532d1535a298979ec0381b9 211 SMART SM01018 2 85 4.7E-22 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS04560 ef36a5056532d1535a298979ec0381b9 211 SUPERFAMILY SSF52242 70 209 2.62E-41 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS04560 ef36a5056532d1535a298979ec0381b9 211 Gene3D G3DSA:3.40.50.280 76 209 3.2E-45 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS04560 ef36a5056532d1535a298979ec0381b9 211 Gene3D G3DSA:1.10.1240.10 3 75 3.6E-19 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS04560 ef36a5056532d1535a298979ec0381b9 211 Pfam PF02310 B12 binding domain 91 192 6.0E-25 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS04560 ef36a5056532d1535a298979ec0381b9 211 SUPERFAMILY SSF47644 3 83 2.09E-19 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS04495 82922f61f8a77e25d6556f76cf43b93a 148 Gene3D G3DSA:3.40.930.10 2 144 4.0E-45 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS04495 82922f61f8a77e25d6556f76cf43b93a 148 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 4 130 3.1E-37 T 11-11-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 Gferi_RS04495 82922f61f8a77e25d6556f76cf43b93a 148 SUPERFAMILY SSF55804 2 143 2.09E-35 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS04495 82922f61f8a77e25d6556f76cf43b93a 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 144 4.3E-37 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS06400 24834eef54a124a5754c86ee82a98f96 667 Pfam PF09826 Beta propeller domain 101 659 2.0E-173 T 11-11-2016 IPR019198 Beta propeller domain-containing family Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 Pfam PF00156 Phosphoribosyl transferase domain 287 385 9.6E-8 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 13 457 47.3 T 11-11-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 14 456 6.0E-161 T 11-11-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 SUPERFAMILY SSF56235 14 238 2.57E-66 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 PIRSF PIRSF000485 10 471 3.0E-176 T 11-11-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 Gene3D G3DSA:3.60.20.10 14 257 2.7E-68 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 Pfam PF13537 Glutamine amidotransferase domain 98 212 2.6E-19 T 11-11-2016 IPR017932 Glutamine amidotransferase type 2 domain Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 SUPERFAMILY SSF53271 250 463 5.77E-70 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS10010 46cc54b04d163a9b540f5c0779438088 471 Gene3D G3DSA:3.40.50.2020 272 437 7.0E-46 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS09680 65ee94a073cdd110cc496b168afd9453 568 SMART SM00283 292 567 1.1E-63 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS09680 65ee94a073cdd110cc496b168afd9453 568 SMART SM00304 210 263 3.6E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS09680 65ee94a073cdd110cc496b168afd9453 568 Pfam PF00672 HAMP domain 190 259 1.6E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS09680 65ee94a073cdd110cc496b168afd9453 568 SUPERFAMILY SSF58104 236 265 4.19E-65 T 11-11-2016 Gferi_RS09680 65ee94a073cdd110cc496b168afd9453 568 SUPERFAMILY SSF58104 298 566 4.19E-65 T 11-11-2016 Gferi_RS09680 65ee94a073cdd110cc496b168afd9453 568 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 354 547 9.8E-47 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS09680 65ee94a073cdd110cc496b168afd9453 568 Gene3D G3DSA:1.10.287.950 307 525 5.5E-47 T 11-11-2016 Gferi_RS03405 8e0df94b9262a1a4a8ad749e954e35bd 422 PIRSF PIRSF006066 1 422 4.0E-115 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS03405 8e0df94b9262a1a4a8ad749e954e35bd 422 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 18 420 8.2E-106 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS03405 8e0df94b9262a1a4a8ad749e954e35bd 422 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 1.1E-101 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS15695 254e6cde29d79f118a7aef8fcc8ac096 275 Gene3D G3DSA:3.20.20.70 2 251 2.9E-132 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS15695 254e6cde29d79f118a7aef8fcc8ac096 275 PIRSF PIRSF034452 1 275 3.2E-152 T 11-11-2016 IPR009215 TIM-barrel domain, IGPS-like Gferi_RS15695 254e6cde29d79f118a7aef8fcc8ac096 275 SUPERFAMILY SSF51621 3 196 9.42E-87 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 Gferi_RS15695 254e6cde29d79f118a7aef8fcc8ac096 275 Gene3D G3DSA:1.20.5.460 252 273 2.8E-4 T 11-11-2016 Gferi_RS15695 254e6cde29d79f118a7aef8fcc8ac096 275 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 7 273 1.6E-135 T 11-11-2016 IPR009215 TIM-barrel domain, IGPS-like Gferi_RS06930 b7f4d34354010263b8cf55cfd8855598 501 Pfam PF13712 Glycosyltransferase like family 288 498 1.9E-90 T 11-11-2016 Gferi_RS06930 b7f4d34354010263b8cf55cfd8855598 501 Gene3D G3DSA:3.90.550.10 2 243 9.4E-47 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06930 b7f4d34354010263b8cf55cfd8855598 501 SUPERFAMILY SSF53448 287 479 2.38E-8 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06930 b7f4d34354010263b8cf55cfd8855598 501 SUPERFAMILY SSF53448 4 220 1.13E-48 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06930 b7f4d34354010263b8cf55cfd8855598 501 Pfam PF00535 Glycosyl transferase family 2 4 171 2.6E-24 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS10035 ef24623104301b6dc6aa6bdf22664aca 663 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 449 661 8.7E-47 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS10035 ef24623104301b6dc6aa6bdf22664aca 663 SUPERFAMILY SSF58104 332 360 5.49E-66 T 11-11-2016 Gferi_RS10035 ef24623104301b6dc6aa6bdf22664aca 663 SUPERFAMILY SSF58104 393 662 5.49E-66 T 11-11-2016 Gferi_RS10035 ef24623104301b6dc6aa6bdf22664aca 663 Pfam PF00672 HAMP domain 284 354 3.7E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS10035 ef24623104301b6dc6aa6bdf22664aca 663 SMART SM00283 387 662 9.6E-74 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS10035 ef24623104301b6dc6aa6bdf22664aca 663 Gene3D G3DSA:1.10.287.950 404 617 2.0E-51 T 11-11-2016 Gferi_RS10035 ef24623104301b6dc6aa6bdf22664aca 663 Pfam PF02743 Cache domain 34 265 6.4E-30 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS10035 ef24623104301b6dc6aa6bdf22664aca 663 Gene3D G3DSA:3.30.450.20 133 279 3.5E-29 T 11-11-2016 Gferi_RS19245 8325eb70c445f0a354b31ab4f4ab84ab 191 PIRSF PIRSF016897 2 189 1.5E-54 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS19245 8325eb70c445f0a354b31ab4f4ab84ab 191 Gene3D G3DSA:3.20.20.400 3 185 1.8E-54 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS19245 8325eb70c445f0a354b31ab4f4ab84ab 191 SUPERFAMILY SSF110391 14 185 9.29E-46 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS19245 8325eb70c445f0a354b31ab4f4ab84ab 191 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 14 183 8.3E-52 T 11-11-2016 IPR006699 Glycerol-3-phosphate responsive antiterminator GO:0006355|GO:0009607 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 427 39.06 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 283 302 1.2E-18 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 59 77 1.2E-18 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 384 397 1.2E-18 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 194 207 1.2E-18 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 79 91 1.2E-18 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 Gene3D G3DSA:3.20.20.10 35 279 1.7E-78 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 SUPERFAMILY SSF50621 267 429 1.32E-55 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 Gene3D G3DSA:2.40.37.10 280 430 5.9E-51 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01181 Diaminopimelate decarboxylase signature 312 330 2.0E-28 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01181 Diaminopimelate decarboxylase signature 77 94 2.0E-28 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01181 Diaminopimelate decarboxylase signature 166 175 2.0E-28 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 PRINTS PR01181 Diaminopimelate decarboxylase signature 394 416 2.0E-28 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 9 426 5.4E-142 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 37 293 1.3E-59 T 11-11-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 314 404 2.0E-14 T 11-11-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Gferi_RS05470 44a0e4a572f6a1c31fb0075656f1acec 448 SUPERFAMILY SSF51419 26 295 1.8E-76 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS09740 3bbe33b0d4c5d5c5ba159f53fd493c9e 323 Gene3D G3DSA:3.40.50.10490 9 124 6.7E-15 T 11-11-2016 Gferi_RS09740 3bbe33b0d4c5d5c5ba159f53fd493c9e 323 Gene3D G3DSA:3.40.50.10490 151 295 9.2E-14 T 11-11-2016 Gferi_RS09740 3bbe33b0d4c5d5c5ba159f53fd493c9e 323 PIRSF PIRSF009290 1 323 2.6E-83 T 11-11-2016 IPR024713 Fructosamine deglycase FrlB Gferi_RS09740 3bbe33b0d4c5d5c5ba159f53fd493c9e 323 SUPERFAMILY SSF53697 7 323 1.99E-50 T 11-11-2016 Gferi_RS09740 3bbe33b0d4c5d5c5ba159f53fd493c9e 323 Pfam PF01380 SIS domain 21 125 1.1E-8 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS09740 3bbe33b0d4c5d5c5ba159f53fd493c9e 323 Pfam PF01380 SIS domain 191 273 7.8E-6 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS02160 ad6059d8304cf4ef40a3dcecc3f8b69e 237 Pfam PF02591 C4-type zinc ribbon domain 201 231 3.3E-10 T 11-11-2016 IPR003743 C4-type zinc ribbon domain Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 Gene3D G3DSA:3.40.47.10 5 127 6.0E-60 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 Gene3D G3DSA:3.40.47.10 186 275 6.0E-60 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 11-11-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 Gene3D G3DSA:3.40.47.10 144 185 3.8E-65 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 Gene3D G3DSA:3.40.47.10 277 391 3.8E-65 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 SUPERFAMILY SSF53901 2 267 7.26E-68 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 11-11-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 Pfam PF02803 Thiolase, C-terminal domain 270 391 2.6E-48 T 11-11-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 391 2.7E-137 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 PIRSF PIRSF000429 1 394 1.1E-126 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 Pfam PF00108 Thiolase, N-terminal domain 6 263 4.6E-68 T 11-11-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 88 106 - T 11-11-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Gferi_RS18180 11f18067c3a9dcdd96b9dc295921449a 394 SUPERFAMILY SSF53901 271 392 1.2E-44 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS19450 5138a3d1697bc5d3b41e0e48a2af1054 327 Pfam PF12840 Helix-turn-helix domain 241 298 9.4E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19450 5138a3d1697bc5d3b41e0e48a2af1054 327 Gene3D G3DSA:1.10.10.10 238 308 1.3E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19450 5138a3d1697bc5d3b41e0e48a2af1054 327 SMART SM00418 241 318 1.9E-14 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19450 5138a3d1697bc5d3b41e0e48a2af1054 327 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 275 290 1.1E-9 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19450 5138a3d1697bc5d3b41e0e48a2af1054 327 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 290 305 1.1E-9 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19450 5138a3d1697bc5d3b41e0e48a2af1054 327 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 243 258 1.1E-9 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS19450 5138a3d1697bc5d3b41e0e48a2af1054 327 SUPERFAMILY SSF46785 234 315 1.68E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04535 4121c6c03ce7564435b11d1f225c8a9e 473 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 3 460 1.0E-108 T 11-11-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 Gferi_RS06860 fc3b176890a097894c466814504ac4d8 345 SMART SM00354 1 70 7.6E-24 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS06860 fc3b176890a097894c466814504ac4d8 345 SUPERFAMILY SSF53822 79 342 4.53E-63 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS06860 fc3b176890a097894c466814504ac4d8 345 Pfam PF13377 Periplasmic binding protein-like domain 182 341 2.2E-34 T 11-11-2016 Gferi_RS06860 fc3b176890a097894c466814504ac4d8 345 Gene3D G3DSA:3.40.50.2300 53 186 6.7E-24 T 11-11-2016 Gferi_RS06860 fc3b176890a097894c466814504ac4d8 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 46 9.1E-18 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Gferi_RS06860 fc3b176890a097894c466814504ac4d8 345 Gene3D G3DSA:1.10.260.40 2 52 2.5E-24 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS06860 fc3b176890a097894c466814504ac4d8 345 SUPERFAMILY SSF47413 2 57 3.75E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS06860 fc3b176890a097894c466814504ac4d8 345 Gene3D G3DSA:3.40.50.2300 187 320 6.6E-49 T 11-11-2016 Gferi_RS04190 c78a8de22a4a633bc69bd95121ffec2e 232 Gene3D G3DSA:3.40.50.150 6 232 9.9E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS04190 c78a8de22a4a633bc69bd95121ffec2e 232 SUPERFAMILY SSF53335 5 232 9.88E-47 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS04190 c78a8de22a4a633bc69bd95121ffec2e 232 Pfam PF13649 Methyltransferase domain 27 122 1.0E-18 T 11-11-2016 Gferi_RS05760 1644672b679d79e5738e056c5d931682 141 SUPERFAMILY SSF52402 1 141 1.34E-34 T 11-11-2016 Gferi_RS05760 1644672b679d79e5738e056c5d931682 141 Pfam PF00582 Universal stress protein family 1 141 9.1E-29 T 11-11-2016 IPR006016 UspA GO:0006950 Gferi_RS05760 1644672b679d79e5738e056c5d931682 141 PRINTS PR01438 Universal stress protein signature 1 19 9.8E-21 T 11-11-2016 IPR006015 Universal stress protein A Gferi_RS05760 1644672b679d79e5738e056c5d931682 141 PRINTS PR01438 Universal stress protein signature 119 141 9.8E-21 T 11-11-2016 IPR006015 Universal stress protein A Gferi_RS05760 1644672b679d79e5738e056c5d931682 141 PRINTS PR01438 Universal stress protein signature 101 113 9.8E-21 T 11-11-2016 IPR006015 Universal stress protein A Gferi_RS05760 1644672b679d79e5738e056c5d931682 141 Gene3D G3DSA:3.40.50.620 1 141 3.8E-37 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS00060 247f5c9952a7cf5cc37e6ab4c7635a08 179 Gene3D G3DSA:3.40.920.10 3 178 3.9E-41 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS00060 247f5c9952a7cf5cc37e6ab4c7635a08 179 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 13 173 2.4E-29 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS00060 247f5c9952a7cf5cc37e6ab4c7635a08 179 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 5 177 4.8E-24 T 11-11-2016 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 Gferi_RS00060 247f5c9952a7cf5cc37e6ab4c7635a08 179 SUPERFAMILY SSF53323 5 178 1.28E-33 T 11-11-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Gferi_RS24190 94d7823d3384251c8737da9e98288ac3 187 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 6 186 6.0E-62 T 11-11-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS24190 94d7823d3384251c8737da9e98288ac3 187 Gene3D G3DSA:3.40.50.300 5 187 7.8E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24190 94d7823d3384251c8737da9e98288ac3 187 PIRSF PIRSF006135 4 187 2.6E-60 T 11-11-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS24190 94d7823d3384251c8737da9e98288ac3 187 SUPERFAMILY SSF52540 5 187 3.67E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25690 9a1bf4ecea2479b4b3f2529e392fe58f 479 Pfam PF00474 Sodium:solute symporter family 36 414 4.4E-35 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS03445 02ee33dfbfa4d19c8e75380e18ae62f0 345 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS03445 02ee33dfbfa4d19c8e75380e18ae62f0 345 Pfam PF08402 TOBE domain 281 318 1.7E-4 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 Gferi_RS03445 02ee33dfbfa4d19c8e75380e18ae62f0 345 SUPERFAMILY SSF50331 243 339 8.5E-8 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal Gferi_RS03445 02ee33dfbfa4d19c8e75380e18ae62f0 345 Gene3D G3DSA:3.40.50.300 3 240 2.5E-76 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03445 02ee33dfbfa4d19c8e75380e18ae62f0 345 SUPERFAMILY SSF52540 3 249 2.66E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03445 02ee33dfbfa4d19c8e75380e18ae62f0 345 Pfam PF00005 ABC transporter 18 167 2.2E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS03445 02ee33dfbfa4d19c8e75380e18ae62f0 345 SMART SM00382 27 217 8.0E-19 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20450 8c2dc17e7f88168e6afb266360a6c2af 209 Pfam PF00571 CBS domain 75 126 6.4E-5 T 11-11-2016 IPR000644 CBS domain Gferi_RS20450 8c2dc17e7f88168e6afb266360a6c2af 209 Gene3D G3DSA:3.10.580.10 2 130 2.9E-18 T 11-11-2016 Gferi_RS20450 8c2dc17e7f88168e6afb266360a6c2af 209 SUPERFAMILY SSF54631 1 128 2.15E-20 T 11-11-2016 Gferi_RS20450 8c2dc17e7f88168e6afb266360a6c2af 209 SUPERFAMILY SSF55021 134 201 9.62E-5 T 11-11-2016 Gferi_RS13150 151251f1fb4f7522a5f71dddda57ab07 188 Pfam PF03167 Uracil DNA glycosylase superfamily 23 178 2.9E-37 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS13150 151251f1fb4f7522a5f71dddda57ab07 188 Gene3D G3DSA:3.40.470.10 15 186 3.7E-50 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS13150 151251f1fb4f7522a5f71dddda57ab07 188 SMART SM00987 23 185 4.4E-26 T 11-11-2016 Gferi_RS13150 151251f1fb4f7522a5f71dddda57ab07 188 SUPERFAMILY SSF52141 17 186 1.34E-46 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS13150 151251f1fb4f7522a5f71dddda57ab07 188 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 17 185 1.7E-43 T 11-11-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain Gferi_RS13150 151251f1fb4f7522a5f71dddda57ab07 188 SMART SM00986 23 185 4.4E-26 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS09900 0c14052f2c7e6f98a45f0048a977c129 100 Gene3D G3DSA:1.10.1270.10 3 99 1.0E-45 T 11-11-2016 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 Gferi_RS09900 0c14052f2c7e6f98a45f0048a977c129 100 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 12 95 1.2E-44 T 11-11-2016 IPR013368 TrpR homologue YerC/YecD Gferi_RS09900 0c14052f2c7e6f98a45f0048a977c129 100 PIRSF PIRSF012508 1 100 1.7E-49 T 11-11-2016 IPR013368 TrpR homologue YerC/YecD Gferi_RS09900 0c14052f2c7e6f98a45f0048a977c129 100 SUPERFAMILY SSF48295 4 95 1.99E-31 T 11-11-2016 IPR010921 Trp repressor/replication initiator GO:0043565 Gferi_RS09900 0c14052f2c7e6f98a45f0048a977c129 100 Pfam PF01371 Trp repressor protein 13 95 1.6E-32 T 11-11-2016 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 Gferi_RS00885 9bf05e6e81cc35706d559b54af3651d7 261 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 255 2.0E-63 T 11-11-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 Gferi_RS00885 9bf05e6e81cc35706d559b54af3651d7 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 2.2E-22 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Gferi_RS00885 9bf05e6e81cc35706d559b54af3651d7 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 2.2E-22 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Gferi_RS00885 9bf05e6e81cc35706d559b54af3651d7 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 2.2E-22 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Gferi_RS00885 9bf05e6e81cc35706d559b54af3651d7 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 20 41 2.2E-22 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Gferi_RS00885 9bf05e6e81cc35706d559b54af3651d7 261 Pfam PF01311 Bacterial export proteins, family 1 12 247 3.0E-65 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 SUPERFAMILY SSF52540 98 239 3.84E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 SUPERFAMILY SSF52540 307 365 3.84E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 SUPERFAMILY SSF52540 677 687 3.84E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 SUPERFAMILY SSF52540 716 736 3.84E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 SUPERFAMILY SSF52540 291 429 1.8E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 SUPERFAMILY SSF52540 716 737 1.8E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 SUPERFAMILY SSF52540 593 687 1.8E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 Pfam PF13307 Helicase C-terminal domain 603 759 5.9E-26 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 Gene3D G3DSA:3.40.50.300 119 247 1.1E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 Gene3D G3DSA:3.40.50.300 311 359 1.1E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03505 2d44d16d3f74ade861150cf1ea01002e 784 SMART SM00491 619 746 4.6E-17 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Gferi_RS16285 8f2144406bc2b64047d2ab524fcc287c 90 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 5 78 5.0E-9 T 11-11-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 Gferi_RS16285 8f2144406bc2b64047d2ab524fcc287c 90 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 4 82 1.5E-16 T 11-11-2016 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein Gferi_RS25960 d2d368198f6c95b5473769289a67d67b 60 Hamap MF_01103 UPF0291 protein . 2 60 16.012 T 11-11-2016 IPR009242 Protein of unknown function DUF896 Gferi_RS25960 d2d368198f6c95b5473769289a67d67b 60 Gene3D G3DSA:1.10.287.540 4 59 2.0E-26 T 11-11-2016 IPR023218 UPF0291 structural domain Gferi_RS25960 d2d368198f6c95b5473769289a67d67b 60 Pfam PF05979 Bacterial protein of unknown function (DUF896) 5 58 4.3E-24 T 11-11-2016 IPR009242 Protein of unknown function DUF896 Gferi_RS25960 d2d368198f6c95b5473769289a67d67b 60 SUPERFAMILY SSF158221 3 42 1.44E-14 T 11-11-2016 Gferi_RS26440 955e275788d3b5883208ae6c8ee37e4f 208 Pfam PF12836 Helix-hairpin-helix motif 144 205 1.7E-21 T 11-11-2016 Gferi_RS26440 955e275788d3b5883208ae6c8ee37e4f 208 SUPERFAMILY SSF47781 134 207 9.0E-28 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS26440 955e275788d3b5883208ae6c8ee37e4f 208 Pfam PF10531 SLBB domain 67 122 3.7E-14 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS26440 955e275788d3b5883208ae6c8ee37e4f 208 Gene3D G3DSA:3.10.560.10 66 123 3.4E-9 T 11-11-2016 Gferi_RS26440 955e275788d3b5883208ae6c8ee37e4f 208 Gene3D G3DSA:1.10.150.280 131 207 2.4E-22 T 11-11-2016 Gferi_RS26440 955e275788d3b5883208ae6c8ee37e4f 208 SMART SM00278 155 174 0.23 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Gferi_RS26440 955e275788d3b5883208ae6c8ee37e4f 208 SMART SM00278 185 204 23.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Gferi_RS26440 955e275788d3b5883208ae6c8ee37e4f 208 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 145 206 1.1E-19 T 11-11-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain Gferi_RS15635 5958608824808b492eb739f98968c57a 174 Pfam PF01930 Domain of unknown function DUF83 11 168 4.5E-52 T 11-11-2016 IPR022765 Dna2/Cas4, domain of unknown function DUF83 Gferi_RS15635 5958608824808b492eb739f98968c57a 174 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 12 167 1.3E-24 T 11-11-2016 IPR013343 CRISPR-associated protein Cas4 Gferi_RS19775 83d412285a43595a9b521ef62abb311a 244 Gene3D G3DSA:3.40.50.880 1 227 1.3E-53 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS19775 83d412285a43595a9b521ef62abb311a 244 SUPERFAMILY SSF52317 20 232 4.9E-40 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS19775 83d412285a43595a9b521ef62abb311a 244 Pfam PF07722 Peptidase C26 3 215 9.5E-68 T 11-11-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 Gferi_RS01075 a64dd7e14da06d351379cd012e3de99b 79 Pfam PF07205 Domain of unknown function (DUF1413) 10 75 5.4E-25 T 11-11-2016 IPR010813 Protein of unknown function DUF1413 Gferi_RS11080 d20de698200a7dd5f5553620dc136192 373 Gene3D G3DSA:3.40.50.2000 1 205 5.4E-88 T 11-11-2016 Gferi_RS11080 d20de698200a7dd5f5553620dc136192 373 Gene3D G3DSA:3.40.50.2000 206 370 6.6E-65 T 11-11-2016 Gferi_RS11080 d20de698200a7dd5f5553620dc136192 373 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 369 1.6E-159 T 11-11-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 Gferi_RS11080 d20de698200a7dd5f5553620dc136192 373 SUPERFAMILY SSF53756 3 371 1.26E-136 T 11-11-2016 Gferi_RS11080 d20de698200a7dd5f5553620dc136192 373 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 25 367 4.0E-122 T 11-11-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS11930 46d0175dbb4a30d4d568a35e62b63ba8 180 Gene3D G3DSA:3.30.420.10 3 178 1.7E-44 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS11930 46d0175dbb4a30d4d568a35e62b63ba8 180 Pfam PF00075 RNase H 3 138 1.2E-29 T 11-11-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 Gferi_RS11930 46d0175dbb4a30d4d568a35e62b63ba8 180 SUPERFAMILY SSF53098 162 177 1.11E-40 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS11930 46d0175dbb4a30d4d568a35e62b63ba8 180 SUPERFAMILY SSF53098 1 131 1.11E-40 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS02630 9a791386fd9efd274879e63436b6a317 214 Gene3D G3DSA:3.40.50.2000 8 188 1.8E-19 T 11-11-2016 Gferi_RS02630 9a791386fd9efd274879e63436b6a317 214 SUPERFAMILY SSF53756 11 214 1.78E-46 T 11-11-2016 Gferi_RS02630 9a791386fd9efd274879e63436b6a317 214 Pfam PF00534 Glycosyl transferases group 1 34 187 6.0E-28 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS14140 3116d6222bacf3282737dd35ad8b400c 157 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 24 140 2.7E-26 T 11-11-2016 IPR010181 CGCAxxGCC motif Gferi_RS14140 3116d6222bacf3282737dd35ad8b400c 157 SUPERFAMILY SSF48695 25 142 1.88E-10 T 11-11-2016 IPR011031 Multihaem cytochrome Gferi_RS14140 3116d6222bacf3282737dd35ad8b400c 157 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 24 138 4.2E-24 T 11-11-2016 IPR010181 CGCAxxGCC motif Gferi_RS09135 9b95f332bf60fd2a140a2f455d4560be 246 Pfam PF00188 Cysteine-rich secretory protein family 128 237 6.0E-16 T 11-11-2016 IPR014044 CAP domain Gferi_RS09135 9b95f332bf60fd2a140a2f455d4560be 246 Gene3D G3DSA:3.40.33.10 122 242 3.7E-9 T 11-11-2016 IPR014044 CAP domain Gferi_RS09135 9b95f332bf60fd2a140a2f455d4560be 246 SUPERFAMILY SSF55797 124 243 6.45E-21 T 11-11-2016 IPR014044 CAP domain Gferi_RS09135 9b95f332bf60fd2a140a2f455d4560be 246 TIGRFAM TIGR02909 spore_YkwD: uncharacterized protein, YkwD family 122 244 3.5E-55 T 11-11-2016 IPR014258 CAP domain, YkwD-like Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 SUPERFAMILY SSF52540 4 248 2.5E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 Pfam PF16326 ABC transporter C-terminal domain 573 635 1.9E-8 T 11-11-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 SUPERFAMILY SSF52540 321 538 4.93E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 SMART SM00382 28 240 1.2E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 SMART SM00382 357 523 2.1E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 Pfam PF12848 ABC transporter 234 322 8.2E-23 T 11-11-2016 IPR032781 ABC-transporter extension domain Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 ProSitePatterns PS00211 ABC transporters family signature. 450 464 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 Pfam PF00005 ABC transporter 19 195 7.4E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 Pfam PF00005 ABC transporter 349 478 9.0E-24 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 Gene3D G3DSA:3.40.50.300 143 289 2.2E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 Gene3D G3DSA:3.40.50.300 5 102 2.2E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 Gene3D G3DSA:3.40.50.300 333 572 2.6E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10540 5549d3c28a318c4cbf1592b4d2994681 638 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS13710 09c7afcc025b72fde39566287258d5ae 69 Pfam PF08984 Domain of unknown function (DUF1858) 4 57 1.0E-21 T 11-11-2016 IPR015077 Domain of unknown function DUF1858 Gferi_RS13710 09c7afcc025b72fde39566287258d5ae 69 SUPERFAMILY SSF140683 1 66 1.31E-17 T 11-11-2016 Gferi_RS13710 09c7afcc025b72fde39566287258d5ae 69 TIGRFAM TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain 4 61 2.1E-28 T 11-11-2016 IPR023883 Conserved hypothetical protein CHP03980, redox-disulphide Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 84 95 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 Gene3D G3DSA:3.30.70.20 38 98 1.2E-9 T 11-11-2016 Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 ProSitePatterns PS01087 Radical activating enzymes signature. 19 40 - T 11-11-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 12 293 9.5E-93 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 SUPERFAMILY SSF54862 12 142 3.08E-18 T 11-11-2016 Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 Pfam PF13353 4Fe-4S single cluster domain 18 192 3.9E-11 T 11-11-2016 Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 PIRSF PIRSF000371 1 300 4.2E-86 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 SUPERFAMILY SSF102114 94 266 9.81E-18 T 11-11-2016 Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 Gene3D G3DSA:3.80.30.10 124 298 5.5E-52 T 11-11-2016 Gferi_RS19285 befbe79984135cf3260423dd2b7f8ac2 301 Pfam PF04055 Radical SAM superfamily 25 237 4.9E-20 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS21205 ec70d1f3cbbac1951338e95cd1e1c7aa 294 Pfam PF13032 Domain of unknown function (DUF3893) 170 293 2.1E-25 T 11-11-2016 IPR024996 Domain of unknown function DUF3893 Gferi_RS20335 8b326cd84d2e8bdc0ecdb827bfe41709 382 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 266 355 5.7E-13 T 11-11-2016 IPR026843 Nuclease SbcCD subunit D, C-terminal domain Gferi_RS20335 8b326cd84d2e8bdc0ecdb827bfe41709 382 SUPERFAMILY SSF56300 1 320 5.49E-56 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS20335 8b326cd84d2e8bdc0ecdb827bfe41709 382 Gene3D G3DSA:3.60.21.10 1 265 1.4E-71 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS20335 8b326cd84d2e8bdc0ecdb827bfe41709 382 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 244 6.9E-55 T 11-11-2016 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 Gferi_RS20335 8b326cd84d2e8bdc0ecdb827bfe41709 382 Pfam PF00149 Calcineurin-like phosphoesterase 1 217 7.1E-17 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS01945 d2b990e72b3b0f661e02d5b0529698d1 417 Gene3D G3DSA:3.65.10.10 220 416 7.1E-56 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS01945 d2b990e72b3b0f661e02d5b0529698d1 417 Gene3D G3DSA:3.65.10.10 21 219 2.6E-60 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS01945 d2b990e72b3b0f661e02d5b0529698d1 417 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 415 2.3E-162 T 11-11-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS01945 d2b990e72b3b0f661e02d5b0529698d1 417 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 43.2 T 11-11-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS01945 d2b990e72b3b0f661e02d5b0529698d1 417 SUPERFAMILY SSF55205 2 416 9.97E-131 T 11-11-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Gferi_RS01945 d2b990e72b3b0f661e02d5b0529698d1 417 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 404 2.3E-96 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 SUPERFAMILY SSF52788 1 119 2.75E-34 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 SUPERFAMILY SSF52788 199 229 2.75E-34 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 3.4E-5 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 3.4E-5 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 Gene3D G3DSA:1.10.287.510 135 176 9.7E-4 T 11-11-2016 Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 SMART SM00226 2 144 9.4E-26 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 119 6.4E-30 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 Gene3D G3DSA:3.40.50.270 177 232 4.2E-45 T 11-11-2016 Gferi_RS11105 826dbca5f641a5da87f8116d9b750e55 236 Gene3D G3DSA:3.40.50.270 1 113 4.2E-45 T 11-11-2016 Gferi_RS04355 756b7ae1abdc3c45618479bfc5454747 240 Pfam PF05239 PRC-barrel domain 3 69 5.8E-8 T 11-11-2016 IPR027275 PRC-barrel domain Gferi_RS04355 756b7ae1abdc3c45618479bfc5454747 240 SUPERFAMILY SSF50346 94 144 1.02E-5 T 11-11-2016 IPR011033 PRC-barrel-like Gferi_RS04355 756b7ae1abdc3c45618479bfc5454747 240 Gene3D G3DSA:2.30.30.240 3 68 1.9E-9 T 11-11-2016 Gferi_RS04355 756b7ae1abdc3c45618479bfc5454747 240 Gene3D G3DSA:2.30.30.240 93 138 9.7E-5 T 11-11-2016 Gferi_RS04355 756b7ae1abdc3c45618479bfc5454747 240 SUPERFAMILY SSF50346 2 67 8.44E-9 T 11-11-2016 IPR011033 PRC-barrel-like Gferi_RS00670 82bc616a848814cda58d34b6038eb701 89 SUPERFAMILY SSF50346 1 75 1.46E-11 T 11-11-2016 IPR011033 PRC-barrel-like Gferi_RS00670 82bc616a848814cda58d34b6038eb701 89 Pfam PF05239 PRC-barrel domain 1 76 1.7E-10 T 11-11-2016 IPR027275 PRC-barrel domain Gferi_RS00670 82bc616a848814cda58d34b6038eb701 89 Gene3D G3DSA:2.30.30.240 1 78 8.0E-19 T 11-11-2016 Gferi_RS00670 82bc616a848814cda58d34b6038eb701 89 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 2 77 2.2E-24 T 11-11-2016 IPR014238 Sporulation protein YlmC/YmxH Gferi_RS26750 1bd66b8bf677a8ea54d04796eccc14f3 474 SUPERFAMILY SSF53686 53 367 1.7E-55 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS26750 1bd66b8bf677a8ea54d04796eccc14f3 474 Gene3D G3DSA:3.40.50.1100 70 145 2.7E-13 T 11-11-2016 Gferi_RS26750 1bd66b8bf677a8ea54d04796eccc14f3 474 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 59 366 2.1E-56 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS26750 1bd66b8bf677a8ea54d04796eccc14f3 474 Gene3D G3DSA:3.40.50.1100 146 366 2.1E-27 T 11-11-2016 Gferi_RS04685 5df0bde7ea1e94415a7246739db0dc19 250 Gene3D G3DSA:3.40.50.720 6 249 2.9E-49 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04685 5df0bde7ea1e94415a7246739db0dc19 250 SUPERFAMILY SSF69572 6 249 1.96E-61 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Gferi_RS04685 5df0bde7ea1e94415a7246739db0dc19 250 Pfam PF00899 ThiF family 8 242 1.1E-39 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Gferi_RS22350 da6eef6ec90259d8b1231018f18551cf 338 SMART SM00829 8 335 1.5E-4 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Gferi_RS22350 da6eef6ec90259d8b1231018f18551cf 338 Pfam PF00107 Zinc-binding dehydrogenase 169 297 3.8E-23 T 11-11-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Gferi_RS22350 da6eef6ec90259d8b1231018f18551cf 338 Gene3D G3DSA:3.40.50.720 162 281 4.7E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22350 da6eef6ec90259d8b1231018f18551cf 338 SUPERFAMILY SSF51735 135 304 7.89E-36 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS22350 da6eef6ec90259d8b1231018f18551cf 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 129 5.1E-28 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Gferi_RS22350 da6eef6ec90259d8b1231018f18551cf 338 Gene3D G3DSA:3.90.180.10 1 161 6.1E-50 T 11-11-2016 IPR011032 GroES-like Gferi_RS22350 da6eef6ec90259d8b1231018f18551cf 338 SUPERFAMILY SSF50129 1 168 8.22E-47 T 11-11-2016 IPR011032 GroES-like Gferi_RS08475 3739162dafc055e14560d9573a9ffe5e 417 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 1 148 1.2E-28 T 11-11-2016 IPR009827 Dicarboxylate carrier MatC N-terminal Gferi_RS21295 d13a9360bbec9e1711b2f18c7c9ba47a 114 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 25 101 2.3E-16 T 11-11-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Gferi_RS21295 d13a9360bbec9e1711b2f18c7c9ba47a 114 SUPERFAMILY SSF51735 24 103 1.05E-15 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS21295 d13a9360bbec9e1711b2f18c7c9ba47a 114 Gene3D G3DSA:3.40.50.720 30 103 4.0E-20 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19730 91936425c03c7a34bf18719e1e9c7f86 290 Pfam PF01791 DeoC/LacD family aldolase 105 258 2.7E-15 T 11-11-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 Gferi_RS19730 91936425c03c7a34bf18719e1e9c7f86 290 SUPERFAMILY SSF51569 35 275 1.76E-58 T 11-11-2016 Gferi_RS19730 91936425c03c7a34bf18719e1e9c7f86 290 PIRSF PIRSF038992 31 289 4.1E-67 T 11-11-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 Gferi_RS19730 91936425c03c7a34bf18719e1e9c7f86 290 Gene3D G3DSA:3.20.20.70 34 284 6.1E-66 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS19730 91936425c03c7a34bf18719e1e9c7f86 290 SMART SM01133 51 259 3.6E-17 T 11-11-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 Gferi_RS03495 d318e93dae6e0fa01dac6fc9c4df225c 545 SUPERFAMILY SSF53041 7 160 4.45E-28 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03495 d318e93dae6e0fa01dac6fc9c4df225c 545 Gene3D G3DSA:3.40.50.1390 7 137 3.9E-18 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03495 d318e93dae6e0fa01dac6fc9c4df225c 545 SMART SM00857 8 160 2.6E-34 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03495 d318e93dae6e0fa01dac6fc9c4df225c 545 Pfam PF07508 Recombinase 186 306 2.7E-20 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS03495 d318e93dae6e0fa01dac6fc9c4df225c 545 Pfam PF00239 Resolvase, N terminal domain 9 160 8.0E-20 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS03495 d318e93dae6e0fa01dac6fc9c4df225c 545 Pfam PF13408 Recombinase zinc beta ribbon domain 320 378 9.7E-13 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS18370 ccbabdcce8ece7bd27d08886ac90c6d0 319 SUPERFAMILY SSF52283 1 136 1.02E-30 T 11-11-2016 Gferi_RS18370 ccbabdcce8ece7bd27d08886ac90c6d0 319 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 2.5E-60 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Gferi_RS18370 ccbabdcce8ece7bd27d08886ac90c6d0 319 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 150 177 - T 11-11-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Gferi_RS18370 ccbabdcce8ece7bd27d08886ac90c6d0 319 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 18 318 5.3E-28 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 Gferi_RS18370 ccbabdcce8ece7bd27d08886ac90c6d0 319 Gene3D G3DSA:3.40.50.720 107 289 1.2E-65 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18370 ccbabdcce8ece7bd27d08886ac90c6d0 319 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 197 219 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Gferi_RS18370 ccbabdcce8ece7bd27d08886ac90c6d0 319 SUPERFAMILY SSF51735 101 288 8.86E-57 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18370 ccbabdcce8ece7bd27d08886ac90c6d0 319 Gene3D G3DSA:3.40.50.720 1 106 2.4E-28 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS02805 98dc9553b063cca20a789b304b1aa2b3 158 Gene3D G3DSA:3.90.960.10 5 156 1.5E-50 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS02805 98dc9553b063cca20a789b304b1aa2b3 158 SUPERFAMILY SSF55826 6 152 9.03E-39 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS02805 98dc9553b063cca20a789b304b1aa2b3 158 Pfam PF04073 Aminoacyl-tRNA editing domain 36 148 5.6E-24 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS02805 98dc9553b063cca20a789b304b1aa2b3 158 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 6 155 1.0E-54 T 11-11-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Gferi_RS02805 98dc9553b063cca20a789b304b1aa2b3 158 PIRSF PIRSF006181 2 158 4.2E-56 T 11-11-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Gferi_RS09790 9930a8ba0cb8b0fc4cbb240897f85c71 291 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 88 286 4.2E-45 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS09790 9930a8ba0cb8b0fc4cbb240897f85c71 291 Gene3D G3DSA:3.90.850.10 73 287 4.7E-60 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS09790 9930a8ba0cb8b0fc4cbb240897f85c71 291 SUPERFAMILY SSF56529 85 288 2.75E-53 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS06730 ca311384bfa9894f7c7d8b7b6d46af14 328 Gene3D G3DSA:3.30.1780.10 1 140 1.5E-42 T 11-11-2016 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Gferi_RS06730 ca311384bfa9894f7c7d8b7b6d46af14 328 Gene3D G3DSA:3.40.50.720 141 300 1.7E-56 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06730 ca311384bfa9894f7c7d8b7b6d46af14 328 PIRSF PIRSF001439 1 328 8.4E-84 T 11-11-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Gferi_RS06730 ca311384bfa9894f7c7d8b7b6d46af14 328 SUPERFAMILY SSF51735 1 327 2.43E-91 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06730 ca311384bfa9894f7c7d8b7b6d46af14 328 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 2 319 8.0E-96 T 11-11-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Gferi_RS08910 814e643a4e9e8ddce70ccea28ff2c44f 213 Pfam PF00293 NUDIX domain 27 134 5.9E-14 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS08910 814e643a4e9e8ddce70ccea28ff2c44f 213 ProSitePatterns PS00893 Nudix box signature. 60 81 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS08910 814e643a4e9e8ddce70ccea28ff2c44f 213 Gene3D G3DSA:3.90.79.10 25 203 2.2E-35 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS08910 814e643a4e9e8ddce70ccea28ff2c44f 213 SUPERFAMILY SSF55811 29 195 4.2E-30 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 Pfam PF03275 UDP-galactopyranose mutase 147 347 2.1E-79 T 11-11-2016 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 Gene3D G3DSA:3.40.50.720 182 255 8.0E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 Gene3D G3DSA:3.40.50.720 322 362 8.0E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 Gene3D G3DSA:3.40.50.720 2 80 8.0E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 SUPERFAMILY SSF51971 3 264 5.53E-47 T 11-11-2016 Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 SUPERFAMILY SSF51971 335 363 5.53E-47 T 11-11-2016 Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 SUPERFAMILY SSF54373 246 314 4.71E-24 T 11-11-2016 Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 74 2.2E-18 T 11-11-2016 Gferi_RS27015 5a5e1e630664e6f53f5b9482389efe40 364 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 3 360 5.1E-124 T 11-11-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 SUPERFAMILY SSF52540 4 227 5.99E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 Pfam PF00005 ABC transporter 270 424 1.0E-17 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 Pfam PF00005 ABC transporter 21 170 6.8E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 SMART SM00382 30 218 2.4E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 SMART SM00382 278 473 1.9E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 SUPERFAMILY SSF52540 259 486 1.27E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 Gene3D G3DSA:3.40.50.300 2 236 4.9E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14200 a803ca4f30d4c91f82df9f0bbc714fab 505 Gene3D G3DSA:3.40.50.300 255 498 5.3E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10405 d7d492d64ae4f04ddb6a4c77fa7d7071 253 SUPERFAMILY SSF143422 1 129 1.26E-26 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10405 d7d492d64ae4f04ddb6a4c77fa7d7071 253 Pfam PF01797 Transposase IS200 like 13 123 2.5E-16 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10405 d7d492d64ae4f04ddb6a4c77fa7d7071 253 Gene3D G3DSA:3.30.70.1290 4 126 3.3E-16 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10405 d7d492d64ae4f04ddb6a4c77fa7d7071 253 SMART SM01321 9 123 1.9E-39 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21790 bbb316db3960d78bfac51d1dea0b6920 160 SMART SM00347 29 130 9.2E-5 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21790 bbb316db3960d78bfac51d1dea0b6920 160 SUPERFAMILY SSF46785 9 146 2.74E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21790 bbb316db3960d78bfac51d1dea0b6920 160 Gene3D G3DSA:1.10.10.10 10 147 1.5E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21790 bbb316db3960d78bfac51d1dea0b6920 160 Pfam PF01047 MarR family 38 93 1.4E-12 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS27170 20d365cbdbb058465f33c12645cbe884 380 Gene3D G3DSA:1.10.443.10 171 364 1.5E-33 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS27170 20d365cbdbb058465f33c12645cbe884 380 SUPERFAMILY SSF56349 170 364 8.24E-30 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS27170 20d365cbdbb058465f33c12645cbe884 380 Pfam PF00589 Phage integrase family 170 357 6.1E-29 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS27170 20d365cbdbb058465f33c12645cbe884 380 Gene3D G3DSA:1.10.150.130 39 154 4.7E-8 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal Gferi_RS10550 9b59f7076c3c4b7ce4b9049065462895 76 Gene3D G3DSA:1.10.1200.10 2 75 5.7E-27 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS10550 9b59f7076c3c4b7ce4b9049065462895 76 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 34 73 3.0E-11 T 11-11-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS10550 9b59f7076c3c4b7ce4b9049065462895 76 Hamap MF_01217 Acyl carrier protein [acpP]. 1 76 20.511 T 11-11-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS10550 9b59f7076c3c4b7ce4b9049065462895 76 SUPERFAMILY SSF47336 2 75 3.93E-21 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS10550 9b59f7076c3c4b7ce4b9049065462895 76 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 75 3.3E-26 T 11-11-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS10550 9b59f7076c3c4b7ce4b9049065462895 76 Pfam PF00550 Phosphopantetheine attachment site 4 72 1.3E-15 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS01770 0695597c6e5538bb2ec91c24414f3523 145 ProSitePatterns PS00855 Signal peptidases II signature. 91 103 - T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Gferi_RS01770 0695597c6e5538bb2ec91c24414f3523 145 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 1 145 16.43 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Gferi_RS01770 0695597c6e5538bb2ec91c24414f3523 145 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 44 52 4.1E-16 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Gferi_RS01770 0695597c6e5538bb2ec91c24414f3523 145 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 120 136 4.1E-16 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Gferi_RS01770 0695597c6e5538bb2ec91c24414f3523 145 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 88 103 4.1E-16 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Gferi_RS01770 0695597c6e5538bb2ec91c24414f3523 145 TIGRFAM TIGR00077 lspA: signal peptidase II 4 140 1.8E-35 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Gferi_RS01770 0695597c6e5538bb2ec91c24414f3523 145 Pfam PF01252 Signal peptidase (SPase) II 6 140 2.0E-37 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 Gferi_RS22760 638bf0ba27ce1a0dbe964539f2688ecf 262 PIRSF PIRSF029755 1 262 8.4E-122 T 11-11-2016 IPR016938 Uncharacterised protein family UPF0317 Gferi_RS22760 638bf0ba27ce1a0dbe964539f2688ecf 262 Pfam PF07286 Protein of unknown function (DUF1445) 112 254 8.0E-68 T 11-11-2016 IPR009906 Protein of unknown function DUF1445 Gferi_RS22760 638bf0ba27ce1a0dbe964539f2688ecf 262 SUPERFAMILY SSF160920 4 255 9.42E-113 T 11-11-2016 Gferi_RS22760 638bf0ba27ce1a0dbe964539f2688ecf 262 Gene3D G3DSA:3.40.1640.10 2 164 1.9E-63 T 11-11-2016 Gferi_RS22760 638bf0ba27ce1a0dbe964539f2688ecf 262 Hamap MF_01830 UPF0317 protein . 8 262 52.404 T 11-11-2016 IPR016938 Uncharacterised protein family UPF0317 Gferi_RS21860 44a62015f6cf8e79c37384cb78ba5b01 256 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 224 253 6.7E-6 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS21860 44a62015f6cf8e79c37384cb78ba5b01 256 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS21860 44a62015f6cf8e79c37384cb78ba5b01 256 SMART SM00382 29 222 4.6E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS21860 44a62015f6cf8e79c37384cb78ba5b01 256 SUPERFAMILY SSF52540 4 244 1.17E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21860 44a62015f6cf8e79c37384cb78ba5b01 256 Pfam PF00005 ABC transporter 20 173 3.8E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS21860 44a62015f6cf8e79c37384cb78ba5b01 256 Gene3D G3DSA:3.40.50.300 2 248 3.4E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10330 fe385ec122950563372f1fc8ed27d9f0 304 Pfam PF07833 Copper amine oxidase N-terminal domain 89 172 2.5E-21 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10330 fe385ec122950563372f1fc8ed27d9f0 304 Gene3D G3DSA:3.30.457.10 93 169 4.1E-23 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10330 fe385ec122950563372f1fc8ed27d9f0 304 SUPERFAMILY SSF55383 93 172 5.62E-20 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12775 0714224a11a90ebf25ac05daa3c03031 158 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 150 4.3E-35 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS12775 0714224a11a90ebf25ac05daa3c03031 158 Gene3D G3DSA:3.40.930.10 3 150 6.0E-39 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS12775 0714224a11a90ebf25ac05daa3c03031 158 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 8 134 3.9E-32 T 11-11-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 Gferi_RS12775 0714224a11a90ebf25ac05daa3c03031 158 SUPERFAMILY SSF55804 4 150 6.28E-36 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS22525 0eb401719a243a8df7ba4ff037a4715a 356 Pfam PF00557 Metallopeptidase family M24 137 339 9.1E-59 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS22525 0eb401719a243a8df7ba4ff037a4715a 356 SUPERFAMILY SSF55920 130 356 7.98E-70 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS22525 0eb401719a243a8df7ba4ff037a4715a 356 SUPERFAMILY SSF53092 5 128 7.5E-27 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal Gferi_RS22525 0eb401719a243a8df7ba4ff037a4715a 356 Gene3D G3DSA:3.90.230.10 130 354 1.0E-72 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS22525 0eb401719a243a8df7ba4ff037a4715a 356 Pfam PF01321 Creatinase/Prolidase N-terminal domain 5 130 3.7E-27 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS22525 0eb401719a243a8df7ba4ff037a4715a 356 Gene3D G3DSA:3.40.350.10 5 128 1.0E-29 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS25265 1df3ebabba860f13896d354dfa400191 379 SUPERFAMILY SSF51735 3 153 4.37E-52 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25265 1df3ebabba860f13896d354dfa400191 379 Gene3D G3DSA:3.30.360.10 328 379 1.3E-31 T 11-11-2016 Gferi_RS25265 1df3ebabba860f13896d354dfa400191 379 Gene3D G3DSA:3.30.360.10 141 282 1.3E-31 T 11-11-2016 Gferi_RS25265 1df3ebabba860f13896d354dfa400191 379 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 120 7.2E-29 T 11-11-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 Gferi_RS25265 1df3ebabba860f13896d354dfa400191 379 SUPERFAMILY SSF55347 126 325 9.32E-33 T 11-11-2016 Gferi_RS25265 1df3ebabba860f13896d354dfa400191 379 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 133 206 2.2E-6 T 11-11-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 Gferi_RS25265 1df3ebabba860f13896d354dfa400191 379 Gene3D G3DSA:3.40.50.720 1 140 2.0E-50 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00055 27efe995514fe01fb8efe923e75fd245 288 SUPERFAMILY SSF53697 101 271 1.82E-32 T 11-11-2016 Gferi_RS00055 27efe995514fe01fb8efe923e75fd245 288 Gene3D G3DSA:1.10.10.10 4 82 1.2E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS00055 27efe995514fe01fb8efe923e75fd245 288 SUPERFAMILY SSF46689 6 83 5.38E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS00055 27efe995514fe01fb8efe923e75fd245 288 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 80 3.0E-13 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Gferi_RS00055 27efe995514fe01fb8efe923e75fd245 288 Pfam PF01380 SIS domain 132 258 3.3E-25 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS00055 27efe995514fe01fb8efe923e75fd245 288 Gene3D G3DSA:3.40.50.10490 112 266 1.3E-28 T 11-11-2016 Gferi_RS02005 7e1c4f93594f3f1c7c112d00d68a890d 424 SUPERFAMILY SSF63411 263 422 5.26E-21 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS02005 7e1c4f93594f3f1c7c112d00d68a890d 424 Pfam PF00675 Insulinase (Peptidase family M16) 60 172 1.2E-17 T 11-11-2016 IPR011765 Peptidase M16, N-terminal Gferi_RS02005 7e1c4f93594f3f1c7c112d00d68a890d 424 SUPERFAMILY SSF63411 10 218 5.67E-44 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 Gferi_RS02005 7e1c4f93594f3f1c7c112d00d68a890d 424 Pfam PF05193 Peptidase M16 inactive domain 179 359 1.0E-18 T 11-11-2016 IPR007863 Peptidase M16, C-terminal Gferi_RS02005 7e1c4f93594f3f1c7c112d00d68a890d 424 Gene3D G3DSA:3.30.830.10 6 216 1.8E-45 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 Gferi_RS02005 7e1c4f93594f3f1c7c112d00d68a890d 424 Gene3D G3DSA:3.30.830.10 278 421 1.0E-14 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 Gferi_RS18105 eef5c6327b4c1c11eff1369d8d327db3 170 Gene3D G3DSA:1.10.443.10 6 154 3.1E-44 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS18105 eef5c6327b4c1c11eff1369d8d327db3 170 SUPERFAMILY SSF56349 4 162 6.77E-45 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS18105 eef5c6327b4c1c11eff1369d8d327db3 170 Pfam PF00589 Phage integrase family 6 149 8.8E-38 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS15100 864a05b657ee58de30d72ebe83225fbf 649 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 405 421 - T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS15100 864a05b657ee58de30d72ebe83225fbf 649 SUPERFAMILY SSF48334 62 283 4.58E-12 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS15100 864a05b657ee58de30d72ebe83225fbf 649 Pfam PF00488 MutS domain V 326 507 2.2E-32 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS15100 864a05b657ee58de30d72ebe83225fbf 649 SUPERFAMILY SSF52540 292 509 1.5E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15100 864a05b657ee58de30d72ebe83225fbf 649 SMART SM00533 9 311 1.1E-5 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Gferi_RS15100 864a05b657ee58de30d72ebe83225fbf 649 SMART SM00534 323 508 2.9E-59 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Gferi_RS15100 864a05b657ee58de30d72ebe83225fbf 649 Gene3D G3DSA:3.40.50.300 294 508 1.4E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25205 c507405392bbe491b409d0c00d138af2 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 125 308 1.7E-28 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS25205 c507405392bbe491b409d0c00d138af2 309 SUPERFAMILY SSF161098 103 289 1.18E-27 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS25205 c507405392bbe491b409d0c00d138af2 309 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 27 78 2.4E-6 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Gferi_RS25205 c507405392bbe491b409d0c00d138af2 309 Gene3D G3DSA:1.10.3720.10 101 306 2.5E-27 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07520 ecdef718bda1058d612e6a124f5cffca 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 253 1.7E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07520 ecdef718bda1058d612e6a124f5cffca 265 SUPERFAMILY SSF161098 11 254 1.87E-39 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07520 ecdef718bda1058d612e6a124f5cffca 265 Gene3D G3DSA:1.10.3720.10 10 260 5.5E-39 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS03805 3920825612a98394ea44600501c5dfc0 823 Pfam PF12846 AAA-like domain 473 663 7.7E-7 T 11-11-2016 Gferi_RS03805 3920825612a98394ea44600501c5dfc0 823 Gene3D G3DSA:3.40.50.300 475 545 1.2E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03805 3920825612a98394ea44600501c5dfc0 823 Gene3D G3DSA:3.40.50.300 643 773 1.2E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03805 3920825612a98394ea44600501c5dfc0 823 SUPERFAMILY SSF52540 439 805 5.57E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04590 b6044b041c4b5a932a2d7f6d8d71e9d1 492 SUPERFAMILY SSF55103 200 490 1.8E-27 T 11-11-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 Gferi_RS04590 b6044b041c4b5a932a2d7f6d8d71e9d1 492 Gene3D G3DSA:3.30.43.10 14 80 2.9E-9 T 11-11-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 Gferi_RS04590 b6044b041c4b5a932a2d7f6d8d71e9d1 492 SUPERFAMILY SSF56176 13 226 1.45E-40 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 Gferi_RS04590 b6044b041c4b5a932a2d7f6d8d71e9d1 492 Gene3D G3DSA:3.30.465.10 90 223 3.0E-25 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 Gferi_RS04590 b6044b041c4b5a932a2d7f6d8d71e9d1 492 Pfam PF02913 FAD linked oxidases, C-terminal domain 259 488 1.1E-24 T 11-11-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 Gferi_RS04590 b6044b041c4b5a932a2d7f6d8d71e9d1 492 Pfam PF01565 FAD binding domain 31 166 1.5E-25 T 11-11-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Gferi_RS00090 21eb55513855b8f331aa8d3d7f0acff4 465 Pfam PF00682 HMGL-like 3 268 1.5E-46 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 Gferi_RS00090 21eb55513855b8f331aa8d3d7f0acff4 465 SUPERFAMILY SSF89000 299 447 5.89E-51 T 11-11-2016 Gferi_RS00090 21eb55513855b8f331aa8d3d7f0acff4 465 Gene3D G3DSA:1.10.10.60 410 445 0.001 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS00090 21eb55513855b8f331aa8d3d7f0acff4 465 Pfam PF02436 Conserved carboxylase domain 296 448 3.8E-52 T 11-11-2016 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Gferi_RS00090 21eb55513855b8f331aa8d3d7f0acff4 465 Gene3D G3DSA:3.20.20.70 2 278 1.2E-113 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS00090 21eb55513855b8f331aa8d3d7f0acff4 465 SUPERFAMILY SSF51569 2 280 4.03E-88 T 11-11-2016 Gferi_RS14125 6a0ee5daff3a424d0393bd2a9c9ae216 438 Pfam PF00155 Aminotransferase class I and II 69 357 8.3E-25 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS14125 6a0ee5daff3a424d0393bd2a9c9ae216 438 SUPERFAMILY SSF53383 6 433 9.31E-55 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS14125 6a0ee5daff3a424d0393bd2a9c9ae216 438 Gene3D G3DSA:3.40.640.10 67 263 1.5E-36 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS14125 6a0ee5daff3a424d0393bd2a9c9ae216 438 Gene3D G3DSA:3.90.1150.10 264 434 5.7E-19 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 SMART SM01382 124 253 4.0E-96 T 11-11-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 7.4E-34 T 11-11-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 251 1.5E-57 T 11-11-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 SUPERFAMILY SSF50104 126 273 9.03E-63 T 11-11-2016 IPR008991 Translation protein SH3-like domain Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 275 9.8E-138 T 11-11-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 Gene3D G3DSA:2.40.50.140 1 114 1.5E-52 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 Gene3D G3DSA:2.30.30.30 119 195 3.6E-36 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 SUPERFAMILY SSF50249 3 125 5.83E-49 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 PIRSF PIRSF002158 3 277 2.4E-99 T 11-11-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 275 48.838 T 11-11-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 SMART SM01383 42 118 4.2E-44 T 11-11-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 Gene3D G3DSA:4.10.950.10 196 274 2.0E-35 T 11-11-2016 IPR014726 Ribosomal protein L2, domain 3 Gferi_RS17410 c520d19b77b35a45746f306a37228190 277 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 11-11-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS11135 e9a3dc9bdcafc3307d0be9e6f3f747a2 292 Pfam PF07136 Protein of unknown function (DUF1385) 37 283 9.2E-94 T 11-11-2016 IPR010787 Protein of unknown function DUF1385 Gferi_RS11135 e9a3dc9bdcafc3307d0be9e6f3f747a2 292 ProDom PD131510 MEMBRANE METAL-DEPENDENT ENZYME YQHQ SPANNING SIMILAR LIPOPROTEIN LIPOPROTEIN PROTEIN HYP001 37 280 4.0E-78 T 11-11-2016 IPR010787 Protein of unknown function DUF1385 Gferi_RS07555 ce766bd921d55e1a856efcfc32f44c4c 255 SMART SM00382 33 241 2.0E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07555 ce766bd921d55e1a856efcfc32f44c4c 255 Gene3D G3DSA:3.40.50.300 3 248 1.4E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07555 ce766bd921d55e1a856efcfc32f44c4c 255 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS07555 ce766bd921d55e1a856efcfc32f44c4c 255 SUPERFAMILY SSF52540 4 246 7.53E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07555 ce766bd921d55e1a856efcfc32f44c4c 255 Pfam PF00005 ABC transporter 24 175 5.7E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS04990 9dfc87d1c125d794b2c031dc85c42647 182 Pfam PF04463 Protein of unknown function (DUF523) 11 151 4.3E-10 T 11-11-2016 IPR007553 Domain of unknown function DUF523 Gferi_RS06060 0942f49e39c073c6faea136ed88a80ad 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 1.2E-23 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS06060 0942f49e39c073c6faea136ed88a80ad 232 SUPERFAMILY SSF52172 3 127 4.13E-41 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS06060 0942f49e39c073c6faea136ed88a80ad 232 SUPERFAMILY SSF46894 135 229 9.64E-27 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS06060 0942f49e39c073c6faea136ed88a80ad 232 SMART SM00448 6 116 9.5E-45 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06060 0942f49e39c073c6faea136ed88a80ad 232 SMART SM00862 153 229 4.0E-24 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS06060 0942f49e39c073c6faea136ed88a80ad 232 Pfam PF00072 Response regulator receiver domain 8 116 1.8E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS06060 0942f49e39c073c6faea136ed88a80ad 232 Gene3D G3DSA:3.40.50.2300 4 152 8.0E-43 T 11-11-2016 Gferi_RS06060 0942f49e39c073c6faea136ed88a80ad 232 Gene3D G3DSA:1.10.10.10 153 230 1.1E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 Gene3D G3DSA:3.30.70.20 66 99 2.7E-14 T 11-11-2016 Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 119 130 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 92 103 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 Pfam PF12800 4Fe-4S binding domain 16 28 0.79 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 Pfam PF00037 4Fe-4S binding domain 86 107 2.4E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 Pfam PF00037 4Fe-4S binding domain 118 134 2.5E-5 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 SUPERFAMILY SSF54862 14 140 1.6E-28 T 11-11-2016 Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 Gene3D G3DSA:3.30.70.20 15 65 3.9E-8 T 11-11-2016 Gferi_RS25890 5d2b277a6a001329105db6d16a28b177 142 Gene3D G3DSA:3.30.70.20 100 140 5.9E-12 T 11-11-2016 Gferi_RS26395 a66a6124845cf89eecb5510e5d676464 194 SMART SM00471 15 143 1.3E-8 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS26395 a66a6124845cf89eecb5510e5d676464 194 Pfam PF01966 HD domain 19 129 3.5E-14 T 11-11-2016 IPR006674 HD domain Gferi_RS26395 a66a6124845cf89eecb5510e5d676464 194 SUPERFAMILY SSF109604 5 185 6.02E-32 T 11-11-2016 Gferi_RS26395 a66a6124845cf89eecb5510e5d676464 194 Gene3D G3DSA:1.10.3210.10 1 184 1.6E-60 T 11-11-2016 IPR006674 HD domain Gferi_RS26395 a66a6124845cf89eecb5510e5d676464 194 TIGRFAM TIGR00488 TIGR00488: putative HD superfamily hydrolase 11 183 1.8E-49 T 11-11-2016 IPR005249 Conserved hypothetical protein CHP00488 Gferi_RS13940 5b6cb8b015edf03dfc788264eb188d2b 265 SUPERFAMILY SSF55811 87 224 1.38E-7 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS13940 5b6cb8b015edf03dfc788264eb188d2b 265 Gene3D G3DSA:3.90.79.10 108 164 1.0E-4 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS24860 7a0dd76f4ef3a66a998e620b715dd0f9 138 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 1.5E-31 T 11-11-2016 IPR000944 Transcription regulator Rrf2-type Gferi_RS24860 7a0dd76f4ef3a66a998e620b715dd0f9 138 Gene3D G3DSA:1.10.10.10 1 135 1.3E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24860 7a0dd76f4ef3a66a998e620b715dd0f9 138 Pfam PF02082 Transcriptional regulator 1 83 9.0E-23 T 11-11-2016 IPR000944 Transcription regulator Rrf2-type Gferi_RS24860 7a0dd76f4ef3a66a998e620b715dd0f9 138 SUPERFAMILY SSF46785 2 134 1.7E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25185 1dbc4709d2785f45bfe134893b005697 429 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 1 428 56.386 T 11-11-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Gferi_RS25185 1dbc4709d2785f45bfe134893b005697 429 Pfam PF01964 Radical SAM ThiC family 2 422 1.8E-201 T 11-11-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Gferi_RS25185 1dbc4709d2785f45bfe134893b005697 429 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 1 424 1.0E-194 T 11-11-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 SUPERFAMILY SSF161098 594 790 5.23E-9 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 639 806 3.8E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 Pfam PF04389 Peptidase family M28 257 454 4.5E-36 T 11-11-2016 IPR007484 Peptidase M28 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 Gene3D G3DSA:1.10.3720.10 593 801 2.8E-8 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 Gene3D G3DSA:3.40.630.10 178 179 1.1E-53 T 11-11-2016 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 Gene3D G3DSA:3.40.630.10 42 102 1.1E-53 T 11-11-2016 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 Gene3D G3DSA:3.40.630.10 254 457 1.1E-53 T 11-11-2016 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 SUPERFAMILY SSF53187 241 454 5.2E-53 T 11-11-2016 Gferi_RS13000 16815b1f4f38243b5d0167ea93518504 811 SUPERFAMILY SSF53187 43 89 5.2E-53 T 11-11-2016 Gferi_RS20385 a7725d7976627a70283b1a2a0f368d4f 164 SUPERFAMILY SSF55729 4 163 1.3E-32 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS20385 a7725d7976627a70283b1a2a0f368d4f 164 Pfam PF13420 Acetyltransferase (GNAT) domain 5 157 3.5E-20 T 11-11-2016 Gferi_RS20385 a7725d7976627a70283b1a2a0f368d4f 164 Gene3D G3DSA:3.40.630.30 5 163 3.4E-34 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS24150 48d39e1554e4cb9741967e18f0e162fa 93 Gene3D G3DSA:3.30.70.1120 1 93 1.8E-32 T 11-11-2016 IPR007546 Protein of unknown function DUF503 Gferi_RS24150 48d39e1554e4cb9741967e18f0e162fa 93 Pfam PF04456 Protein of unknown function (DUF503) 3 89 6.3E-31 T 11-11-2016 IPR007546 Protein of unknown function DUF503 Gferi_RS24150 48d39e1554e4cb9741967e18f0e162fa 93 SUPERFAMILY SSF103007 1 93 3.14E-29 T 11-11-2016 IPR007546 Protein of unknown function DUF503 Gferi_RS19210 b1cf7f0bc8d414c4cbffb9eb757507ed 368 Pfam PF12804 MobA-like NTP transferase domain 9 166 6.1E-28 T 11-11-2016 IPR025877 MobA-like NTP transferase Gferi_RS19210 b1cf7f0bc8d414c4cbffb9eb757507ed 368 SMART SM00471 217 349 3.0E-5 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS19210 b1cf7f0bc8d414c4cbffb9eb757507ed 368 Pfam PF01966 HD domain 223 314 4.3E-9 T 11-11-2016 IPR006674 HD domain Gferi_RS19210 b1cf7f0bc8d414c4cbffb9eb757507ed 368 Gene3D G3DSA:3.90.550.10 4 198 4.5E-26 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS19210 b1cf7f0bc8d414c4cbffb9eb757507ed 368 Gene3D G3DSA:1.10.3210.10 203 339 3.2E-12 T 11-11-2016 IPR006674 HD domain Gferi_RS19210 b1cf7f0bc8d414c4cbffb9eb757507ed 368 SUPERFAMILY SSF109604 185 321 3.66E-14 T 11-11-2016 Gferi_RS19210 b1cf7f0bc8d414c4cbffb9eb757507ed 368 SUPERFAMILY SSF53448 7 200 1.51E-25 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 91 451 8.1E-24 T 11-11-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 384 415 - T 11-11-2016 IPR030390 RNA methyltransferase TrmA, active site Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 Pfam PF01938 TRAM domain 10 60 5.5E-11 T 11-11-2016 IPR002792 TRAM domain Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 Gene3D G3DSA:3.40.50.150 247 452 7.8E-75 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 SUPERFAMILY SSF53335 70 449 1.57E-91 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 Gene3D G3DSA:2.40.50.140 4 81 2.8E-25 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 19 446 2.3E-161 T 11-11-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 SUPERFAMILY SSF50249 3 62 2.97E-13 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS20985 6dd8eaa0cf182e8d09df947611f60b77 459 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 436 446 - T 11-11-2016 IPR030391 RNA methyltransferase TrmA, conserved site Gferi_RS05795 d504d8ecc2102851cfc26f171c92f9cc 278 Pfam PF00005 ABC transporter 22 170 4.7E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS05795 d504d8ecc2102851cfc26f171c92f9cc 278 Gene3D G3DSA:3.40.50.300 5 234 4.0E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05795 d504d8ecc2102851cfc26f171c92f9cc 278 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS05795 d504d8ecc2102851cfc26f171c92f9cc 278 SUPERFAMILY SSF52540 4 233 4.38E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05795 d504d8ecc2102851cfc26f171c92f9cc 278 TIGRFAM TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein 15 202 1.7E-69 T 11-11-2016 IPR005876 Cobalt transport protein ATP-binding subunit GO:0006824 Gferi_RS05795 d504d8ecc2102851cfc26f171c92f9cc 278 SMART SM00382 31 218 1.4E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS12175 bbc21ebf4ac41a3106171f1473801571 256 Pfam PF05175 Methyltransferase small domain 36 130 6.6E-11 T 11-11-2016 IPR007848 Methyltransferase small domain GO:0008168 Gferi_RS12175 bbc21ebf4ac41a3106171f1473801571 256 Gene3D G3DSA:3.40.50.150 34 244 1.8E-72 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS12175 bbc21ebf4ac41a3106171f1473801571 256 SUPERFAMILY SSF53335 12 215 8.66E-31 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 Gene3D G3DSA:1.10.8.60 324 400 1.8E-20 T 11-11-2016 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 364 373 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 Gene3D G3DSA:3.40.50.300 149 323 8.6E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 Pfam PF02954 Bacterial regulatory protein, Fis family 422 460 5.0E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 237 252 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 SUPERFAMILY SSF46689 364 462 6.27E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 10 122 1.4E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 SMART SM00091 7 75 9.6E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 443 463 3.0E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 426 443 3.0E-11 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 Pfam PF00158 Sigma-54 interaction domain 152 317 2.2E-59 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 Gene3D G3DSA:1.10.10.60 414 462 1.2E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 Pfam PF08448 PAS fold 14 117 4.5E-7 T 11-11-2016 IPR013656 PAS fold-4 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 SMART SM00382 172 314 3.7E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 Gene3D G3DSA:3.30.450.20 8 117 6.7E-13 T 11-11-2016 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 SUPERFAMILY SSF52540 152 388 1.43E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 176 189 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS26735 71b85795fec48970359b01941ebd4928 465 SUPERFAMILY SSF55785 8 101 1.92E-12 T 11-11-2016 IPR000014 PAS domain Gferi_RS09935 8622c56f841e2b9a66820ff78356f88b 542 SUPERFAMILY SSF53850 34 539 3.39E-139 T 11-11-2016 Gferi_RS09935 8622c56f841e2b9a66820ff78356f88b 542 Gene3D G3DSA:3.10.105.10 294 512 9.1E-62 T 11-11-2016 Gferi_RS09935 8622c56f841e2b9a66820ff78356f88b 542 PIRSF PIRSF002741 1 542 7.9E-123 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS09935 8622c56f841e2b9a66820ff78356f88b 542 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 465 1.7E-92 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS09935 8622c56f841e2b9a66820ff78356f88b 542 Gene3D G3DSA:3.90.76.10 48 220 2.2E-51 T 11-11-2016 Gferi_RS12570 c260b24038c70aa0b2958559002ed062 115 Pfam PF01638 HxlR-like helix-turn-helix 22 111 3.5E-27 T 11-11-2016 IPR002577 Helix-turn-helix, HxlR type Gferi_RS12570 c260b24038c70aa0b2958559002ed062 115 SUPERFAMILY SSF46785 12 109 2.35E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12570 c260b24038c70aa0b2958559002ed062 115 Gene3D G3DSA:1.10.10.10 8 110 2.8E-36 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 Gene3D G3DSA:3.40.1450.10 77 309 1.1E-100 T 11-11-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 SUPERFAMILY SSF53649 2 76 5.37E-74 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 SUPERFAMILY SSF53649 313 508 5.37E-74 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 Pfam PF01676 Metalloenzyme superfamily 3 496 2.9E-75 T 11-11-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 PIRSF PIRSF001492 1 510 1.4E-208 T 11-11-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 3 508 2.1E-215 T 11-11-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 81 297 5.6E-89 T 11-11-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 3 509 50.585 T 11-11-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 SUPERFAMILY SSF64158 76 304 6.67E-90 T 11-11-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 Gene3D G3DSA:3.40.720.10 313 508 1.2E-86 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS20260 6c33c5a13bcc59c465885dae4a4b5e2f 519 Gene3D G3DSA:3.40.720.10 2 76 1.2E-86 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 Gene3D G3DSA:3.40.190.10 88 174 9.9E-19 T 11-11-2016 Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 SUPERFAMILY SSF53850 88 298 3.8E-45 T 11-11-2016 Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 Gene3D G3DSA:1.10.10.10 1 80 5.2E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 SUPERFAMILY SSF46785 1 109 2.18E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 Pfam PF03466 LysR substrate binding domain 87 295 9.7E-47 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.4E-20 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 Gene3D G3DSA:3.40.190.10 175 263 2.2E-20 T 11-11-2016 Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.6E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.6E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS14435 cdba08a5b16dfd40f4981165908721c1 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.6E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS21070 02469d06704101a80a55b25e151b0975 386 Pfam PF02810 SEC-C motif 368 386 3.5E-10 T 11-11-2016 IPR004027 SEC-C motif Gferi_RS21070 02469d06704101a80a55b25e151b0975 386 Pfam PF06685 Protein of unknown function (DUF1186) 97 340 1.0E-74 T 11-11-2016 IPR010602 Protein of unknown function DUF1186 Gferi_RS21070 02469d06704101a80a55b25e151b0975 386 SUPERFAMILY SSF103642 365 385 5.07E-7 T 11-11-2016 Gferi_RS21070 02469d06704101a80a55b25e151b0975 386 Gene3D G3DSA:3.10.450.50 342 386 1.3E-12 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS05445 f04fcda57fbdfc08573e53b106e8fdff 458 Gene3D G3DSA:3.20.20.370 259 420 7.7E-23 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS05445 f04fcda57fbdfc08573e53b106e8fdff 458 Pfam PF01522 Polysaccharide deacetylase 285 418 6.2E-20 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS05445 f04fcda57fbdfc08573e53b106e8fdff 458 SUPERFAMILY SSF88713 246 430 6.12E-32 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS05445 f04fcda57fbdfc08573e53b106e8fdff 458 Pfam PF00395 S-layer homology domain 92 134 2.0E-8 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS05445 f04fcda57fbdfc08573e53b106e8fdff 458 Pfam PF00395 S-layer homology domain 162 200 4.0E-5 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 SUPERFAMILY SSF51905 2 37 4.68E-21 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 SUPERFAMILY SSF51905 165 335 4.68E-21 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 Gene3D G3DSA:3.50.50.60 261 334 1.7E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 Gene3D G3DSA:3.50.50.60 2 104 1.7E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 321 1.2E-40 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 6.4E-7 T 11-11-2016 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 6.4E-7 T 11-11-2016 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 6.4E-7 T 11-11-2016 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 Gene3D G3DSA:3.50.50.60 105 259 1.1E-20 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19635 f727f81dfa9b309893aae810e6c2bc4e 597 SUPERFAMILY SSF51905 2 207 1.24E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07235 4d07de605940e2162a757ed2f897867e 193 Gene3D G3DSA:1.10.357.10 10 181 6.0E-33 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS07235 4d07de605940e2162a757ed2f897867e 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 4.0E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07235 4d07de605940e2162a757ed2f897867e 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 4.0E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07235 4d07de605940e2162a757ed2f897867e 193 SUPERFAMILY SSF48498 82 183 3.2E-5 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS07235 4d07de605940e2162a757ed2f897867e 193 SUPERFAMILY SSF46689 11 84 6.16E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07235 4d07de605940e2162a757ed2f897867e 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 60 2.7E-12 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS13580 0ebb22237297644f01937fcfbeed12fe 366 SUPERFAMILY SSF50969 79 331 1.1E-8 T 11-11-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like Gferi_RS13580 0ebb22237297644f01937fcfbeed12fe 366 Gene3D G3DSA:2.130.10.10 78 180 1.4E-7 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Gferi_RS13580 0ebb22237297644f01937fcfbeed12fe 366 Gene3D G3DSA:2.130.10.10 226 332 1.4E-7 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Gferi_RS21560 86120561cf9d5b2a5276d063afbadd1a 669 Pfam PF00890 FAD binding domain 22 264 7.1E-11 T 11-11-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS21560 86120561cf9d5b2a5276d063afbadd1a 669 Gene3D G3DSA:3.50.50.60 15 257 1.1E-26 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS21560 86120561cf9d5b2a5276d063afbadd1a 669 Gene3D G3DSA:3.50.50.60 411 470 1.1E-26 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS21560 86120561cf9d5b2a5276d063afbadd1a 669 SUPERFAMILY SSF51905 18 254 9.64E-20 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS21560 86120561cf9d5b2a5276d063afbadd1a 669 SUPERFAMILY SSF51905 419 473 9.64E-20 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS17745 b85348d4fa134c872ecd65c72fdd4be8 325 SUPERFAMILY SSF51726 8 323 5.58E-42 T 11-11-2016 Gferi_RS17745 b85348d4fa134c872ecd65c72fdd4be8 325 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 64 292 1.5E-23 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS17745 b85348d4fa134c872ecd65c72fdd4be8 325 Gene3D G3DSA:3.20.20.210 49 306 9.6E-37 T 11-11-2016 Gferi_RS26935 ef44a6e2f51b2197a87144f91d47bd63 535 SUPERFAMILY SSF56519 23 179 6.15E-18 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Gferi_RS26935 ef44a6e2f51b2197a87144f91d47bd63 535 Gene3D G3DSA:3.40.710.10 204 527 1.7E-100 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26935 ef44a6e2f51b2197a87144f91d47bd63 535 Pfam PF00905 Penicillin binding protein transpeptidase domain 217 524 5.6E-74 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Gferi_RS26935 ef44a6e2f51b2197a87144f91d47bd63 535 Gene3D G3DSA:3.90.1310.10 108 203 3.8E-14 T 11-11-2016 Gferi_RS26935 ef44a6e2f51b2197a87144f91d47bd63 535 SUPERFAMILY SSF56601 198 527 4.15E-92 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26935 ef44a6e2f51b2197a87144f91d47bd63 535 Pfam PF03717 Penicillin-binding Protein dimerisation domain 33 175 1.8E-9 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Gferi_RS08160 9277a25e18bc3311eff172366105e757 217 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 3 112 4.5E-23 T 11-11-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Gferi_RS08160 9277a25e18bc3311eff172366105e757 217 SUPERFAMILY SSF52540 1 119 7.39E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08160 9277a25e18bc3311eff172366105e757 217 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 3 157 7.8E-27 T 11-11-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Gferi_RS08160 9277a25e18bc3311eff172366105e757 217 Gene3D G3DSA:3.40.50.300 1 160 3.4E-33 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01735 01e482064ccdf9a2be4c3064ca89540c 94 ProDom PD063023 UPF0296 YLZA BA4010/GBAA4010/BAS3723 BLI01788/BL02292 BT9727_3613 BC3870 TM1690 CBDBA43 SYC0519_C BCE33L3631 5 78 1.0E-35 T 11-11-2016 IPR007169 Uncharacterised protein family UPF0296 Gferi_RS01735 01e482064ccdf9a2be4c3064ca89540c 94 Hamap MF_01503 UPF0296 protein . 3 90 29.725 T 11-11-2016 IPR007169 Uncharacterised protein family UPF0296 Gferi_RS01735 01e482064ccdf9a2be4c3064ca89540c 94 Pfam PF04025 Domain of unknown function (DUF370) 5 77 1.7E-37 T 11-11-2016 IPR007169 Uncharacterised protein family UPF0296 Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 Pfam PF01546 Peptidase family M20/M25/M40 73 389 2.5E-38 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 Gene3D G3DSA:3.30.70.360 186 301 1.3E-36 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 SUPERFAMILY SSF53187 302 394 3.55E-88 T 11-11-2016 Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 SUPERFAMILY SSF53187 2 201 3.55E-88 T 11-11-2016 Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 PIRSF PIRSF005962 1 397 3.2E-134 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 Gene3D G3DSA:3.40.630.10 302 400 1.5E-104 T 11-11-2016 Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 Gene3D G3DSA:3.40.630.10 2 182 1.5E-104 T 11-11-2016 Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 SUPERFAMILY SSF55031 186 303 2.75E-26 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 Pfam PF07687 Peptidase dimerisation domain 192 281 1.6E-8 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS05010 2b10f56436e63f4d3f7c01d4b22f3801 403 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 381 2.1E-114 T 11-11-2016 IPR017439 Amidohydrolase GO:0016787 Gferi_RS03415 28af5fed005bd83fc3db8831d16cfa56 392 Pfam PF01321 Creatinase/Prolidase N-terminal domain 15 160 1.8E-22 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS03415 28af5fed005bd83fc3db8831d16cfa56 392 Gene3D G3DSA:3.90.230.10 160 389 7.9E-46 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS03415 28af5fed005bd83fc3db8831d16cfa56 392 SUPERFAMILY SSF55920 160 391 1.44E-56 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS03415 28af5fed005bd83fc3db8831d16cfa56 392 SUPERFAMILY SSF53092 4 158 2.79E-39 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal Gferi_RS03415 28af5fed005bd83fc3db8831d16cfa56 392 Gene3D G3DSA:3.40.350.10 5 158 1.7E-39 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS03415 28af5fed005bd83fc3db8831d16cfa56 392 Pfam PF00557 Metallopeptidase family M24 168 376 3.4E-33 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS18140 16c5dbec65101b2b386118c7f8075e8d 194 SUPERFAMILY SSF46689 4 68 3.59E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18140 16c5dbec65101b2b386118c7f8075e8d 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.9E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS18140 16c5dbec65101b2b386118c7f8075e8d 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.9E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS18140 16c5dbec65101b2b386118c7f8075e8d 194 Gene3D G3DSA:1.10.357.10 1 186 7.4E-25 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS18140 16c5dbec65101b2b386118c7f8075e8d 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 58 2.3E-12 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS25870 452a4e68bceefd2667c880101bda6175 253 SMART SM00850 153 252 1.2E-34 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS25870 452a4e68bceefd2667c880101bda6175 253 SMART SM00448 1 114 7.4E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS25870 452a4e68bceefd2667c880101bda6175 253 Pfam PF04397 LytTr DNA-binding domain 156 251 2.4E-27 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 Gferi_RS25870 452a4e68bceefd2667c880101bda6175 253 Gene3D G3DSA:2.40.50.40 145 212 4.9E-21 T 11-11-2016 Gferi_RS25870 452a4e68bceefd2667c880101bda6175 253 Gene3D G3DSA:3.40.50.2300 1 126 1.9E-32 T 11-11-2016 Gferi_RS25870 452a4e68bceefd2667c880101bda6175 253 Gene3D G3DSA:2.20.25.10 214 253 7.5E-9 T 11-11-2016 Gferi_RS25870 452a4e68bceefd2667c880101bda6175 253 Pfam PF00072 Response regulator receiver domain 4 114 8.6E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS25870 452a4e68bceefd2667c880101bda6175 253 SUPERFAMILY SSF52172 1 141 1.57E-32 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS26165 fbfd464ab7acf1022bbaa80266e2361b 224 SUPERFAMILY SSF52499 36 194 2.22E-27 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS26165 fbfd464ab7acf1022bbaa80266e2361b 224 Gene3D G3DSA:3.40.50.850 41 193 9.8E-28 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS26165 fbfd464ab7acf1022bbaa80266e2361b 224 Pfam PF00857 Isochorismatase family 47 192 1.4E-21 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS15350 18c82c217a955adf02b6ee87918e3c54 207 Gene3D G3DSA:3.50.30.50 1 204 2.5E-52 T 11-11-2016 Gferi_RS15350 18c82c217a955adf02b6ee87918e3c54 207 Pfam PF04199 Putative cyclase 4 149 1.5E-21 T 11-11-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734 Gferi_RS15350 18c82c217a955adf02b6ee87918e3c54 207 SUPERFAMILY SSF102198 1 204 3.4E-51 T 11-11-2016 Gferi_RS11330 8f04dd0dbcafe9bce6d1efc6ec897602 374 Gene3D G3DSA:3.40.50.2000 1 201 5.2E-70 T 11-11-2016 Gferi_RS11330 8f04dd0dbcafe9bce6d1efc6ec897602 374 Gene3D G3DSA:3.40.50.2000 202 363 4.1E-51 T 11-11-2016 Gferi_RS11330 8f04dd0dbcafe9bce6d1efc6ec897602 374 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 358 1.1E-73 T 11-11-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 Gferi_RS11330 8f04dd0dbcafe9bce6d1efc6ec897602 374 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 25 360 2.1E-92 T 11-11-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS11330 8f04dd0dbcafe9bce6d1efc6ec897602 374 SUPERFAMILY SSF53756 3 372 2.2E-109 T 11-11-2016 Gferi_RS00710 8e70fbd749efb28b3cc46f3320dd5a9f 319 Gene3D G3DSA:3.90.1640.10 16 195 7.1E-30 T 11-11-2016 Gferi_RS00710 8e70fbd749efb28b3cc46f3320dd5a9f 319 Pfam PF02272 DHHA1 domain 254 306 1.4E-5 T 11-11-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Gferi_RS00710 8e70fbd749efb28b3cc46f3320dd5a9f 319 SUPERFAMILY SSF64182 15 301 3.53E-61 T 11-11-2016 Gferi_RS00710 8e70fbd749efb28b3cc46f3320dd5a9f 319 Pfam PF01368 DHH family 17 155 1.6E-14 T 11-11-2016 IPR001667 DDH domain Gferi_RS09165 b0da66b80a9b3a84c0f3b351e447c187 227 Gene3D G3DSA:3.40.50.300 5 227 1.6E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09165 b0da66b80a9b3a84c0f3b351e447c187 227 SMART SM00382 36 223 2.0E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09165 b0da66b80a9b3a84c0f3b351e447c187 227 SUPERFAMILY SSF52540 7 226 1.95E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09165 b0da66b80a9b3a84c0f3b351e447c187 227 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS09165 b0da66b80a9b3a84c0f3b351e447c187 227 Pfam PF00005 ABC transporter 27 175 2.9E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 Gene3D G3DSA:3.40.50.880 252 460 1.1E-27 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 7 239 7.2E-29 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 450 1.2E-59 T 11-11-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 6 501 4.9E-164 T 11-11-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 SUPERFAMILY SSF52317 192 238 1.83E-35 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 SUPERFAMILY SSF52317 265 447 1.83E-35 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 508 175.726 T 11-11-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 SUPERFAMILY SSF52540 1 230 1.99E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24215 0633a92816439b75d60e496d49b28698 509 Gene3D G3DSA:3.40.50.300 4 237 8.4E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 SUPERFAMILY SSF54506 2 133 1.73E-40 T 11-11-2016 Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 Gene3D G3DSA:3.10.310.10 2 121 8.1E-51 T 11-11-2016 Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 275 6.2E-91 T 11-11-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 2 277 36.741 T 11-11-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 63 77 - T 11-11-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 Pfam PF01678 Diaminopimelate epimerase 156 269 5.5E-25 T 11-11-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 Pfam PF01678 Diaminopimelate epimerase 4 125 6.2E-32 T 11-11-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 Gene3D G3DSA:3.10.310.10 122 265 5.7E-45 T 11-11-2016 Gferi_RS01745 63d00130983ab0f231a5c717c653a936 277 SUPERFAMILY SSF54506 143 274 6.8E-42 T 11-11-2016 Gferi_RS07160 05faa721495470db513a8c6fc34e50d0 387 Pfam PF00155 Aminotransferase class I and II 30 379 4.1E-62 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS07160 05faa721495470db513a8c6fc34e50d0 387 SUPERFAMILY SSF53383 5 381 1.28E-99 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS07160 05faa721495470db513a8c6fc34e50d0 387 Gene3D G3DSA:3.40.640.10 46 253 1.9E-63 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS07160 05faa721495470db513a8c6fc34e50d0 387 Gene3D G3DSA:3.90.1150.10 254 381 8.2E-37 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS11680 79d6f45f09663f35b4093d0c0b9f2580 450 Pfam PF02687 FtsX-like permease family 320 442 1.3E-21 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS11680 79d6f45f09663f35b4093d0c0b9f2580 450 Pfam PF12704 MacB-like periplasmic core domain 21 291 2.8E-19 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS10455 6b2beb9c9b1c0d29babf6333203abd8f 269 Gene3D G3DSA:3.30.457.10 191 240 3.5E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10455 6b2beb9c9b1c0d29babf6333203abd8f 269 Gene3D G3DSA:3.30.457.10 128 190 2.3E-27 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10455 6b2beb9c9b1c0d29babf6333203abd8f 269 Gene3D G3DSA:3.30.457.10 86 127 2.7E-7 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10455 6b2beb9c9b1c0d29babf6333203abd8f 269 SUPERFAMILY SSF55383 119 202 4.97E-25 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10455 6b2beb9c9b1c0d29babf6333203abd8f 269 Pfam PF07833 Copper amine oxidase N-terminal domain 179 245 5.4E-8 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10455 6b2beb9c9b1c0d29babf6333203abd8f 269 Pfam PF07833 Copper amine oxidase N-terminal domain 116 208 8.9E-27 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12265 e0ce07bd22709b64c5f50793a94e319c 371 Pfam PF03845 Spore germination protein 6 316 3.0E-49 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS12265 e0ce07bd22709b64c5f50793a94e319c 371 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 5 357 7.2E-54 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS13320 0f7564d213c79fa6a12c70aa47e20b9a 287 Gene3D G3DSA:3.90.1530.10 26 126 1.2E-40 T 11-11-2016 Gferi_RS13320 0f7564d213c79fa6a12c70aa47e20b9a 287 Pfam PF02195 ParB-like nuclease domain 32 119 1.7E-27 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS13320 0f7564d213c79fa6a12c70aa47e20b9a 287 SMART SM00470 31 120 2.0E-38 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS13320 0f7564d213c79fa6a12c70aa47e20b9a 287 SUPERFAMILY SSF110849 32 176 7.85E-36 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS13320 0f7564d213c79fa6a12c70aa47e20b9a 287 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 31 204 6.3E-58 T 11-11-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Gferi_RS08200 1c9febb5b06ebb68852eaa41bcc3a4ae 392 Gene3D G3DSA:3.30.70.20 179 251 4.3E-5 T 11-11-2016 Gferi_RS08200 1c9febb5b06ebb68852eaa41bcc3a4ae 392 Pfam PF04205 FMN-binding domain 314 383 4.1E-15 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS08200 1c9febb5b06ebb68852eaa41bcc3a4ae 392 Pfam PF12801 4Fe-4S binding domain 166 205 1.1E-5 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS08200 1c9febb5b06ebb68852eaa41bcc3a4ae 392 Pfam PF12801 4Fe-4S binding domain 70 109 2.4E-11 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS08200 1c9febb5b06ebb68852eaa41bcc3a4ae 392 SMART SM00900 314 388 2.7E-17 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS08200 1c9febb5b06ebb68852eaa41bcc3a4ae 392 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 212 223 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS08200 1c9febb5b06ebb68852eaa41bcc3a4ae 392 SUPERFAMILY SSF54862 147 247 4.97E-12 T 11-11-2016 Gferi_RS08200 1c9febb5b06ebb68852eaa41bcc3a4ae 392 SUPERFAMILY SSF54862 79 97 4.97E-12 T 11-11-2016 Gferi_RS21085 d36ef571581f247578472dfb9ba1b9fc 280 Pfam PF04383 KilA-N domain 13 143 1.3E-23 T 11-11-2016 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding Gferi_RS21085 d36ef571581f247578472dfb9ba1b9fc 280 SMART SM01252 18 145 6.1E-48 T 11-11-2016 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding Gferi_RS25795 48515aaa55f4ca263e98e5332d95854f 229 SUPERFAMILY SSF53187 22 227 1.66E-38 T 11-11-2016 Gferi_RS25795 48515aaa55f4ca263e98e5332d95854f 229 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 24 221 7.3E-41 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS25795 48515aaa55f4ca263e98e5332d95854f 229 SMART SM00646 104 223 2.2E-16 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS25795 48515aaa55f4ca263e98e5332d95854f 229 Gene3D G3DSA:3.40.630.40 21 226 2.1E-44 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS21725 3d8f9ff8b32ef137f600cc0c022479ed 150 Pfam PF14102 Capsule biosynthesis CapC 12 128 7.5E-35 T 11-11-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 Gferi_RS21725 3d8f9ff8b32ef137f600cc0c022479ed 150 TIGRFAM TIGR04011 poly_gGlu_PgsC: poly-gamma-glutamate biosynthesis protein PgsC 10 139 4.4E-42 T 11-11-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 Gferi_RS21725 3d8f9ff8b32ef137f600cc0c022479ed 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 66 80 1.4E-24 T 11-11-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 Gferi_RS21725 3d8f9ff8b32ef137f600cc0c022479ed 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 2 17 1.4E-24 T 11-11-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 Gferi_RS21725 3d8f9ff8b32ef137f600cc0c022479ed 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 20 37 1.4E-24 T 11-11-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 Gferi_RS21725 3d8f9ff8b32ef137f600cc0c022479ed 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 118 132 1.4E-24 T 11-11-2016 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 Gferi_RS23845 8c4e13fac2807eb9e0cad96fc6e545f1 64 SUPERFAMILY SSF140683 1 62 6.93E-23 T 11-11-2016 Gferi_RS23845 8c4e13fac2807eb9e0cad96fc6e545f1 64 Pfam PF08984 Domain of unknown function (DUF1858) 2 55 7.3E-24 T 11-11-2016 IPR015077 Domain of unknown function DUF1858 Gferi_RS23845 8c4e13fac2807eb9e0cad96fc6e545f1 64 Gene3D G3DSA:1.10.3910.10 1 62 9.6E-9 T 11-11-2016 IPR015077 Domain of unknown function DUF1858 Gferi_RS23845 8c4e13fac2807eb9e0cad96fc6e545f1 64 TIGRFAM TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain 2 59 7.8E-28 T 11-11-2016 IPR023883 Conserved hypothetical protein CHP03980, redox-disulphide Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 SUPERFAMILY SSF55031 181 379 1.46E-47 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 Gene3D G3DSA:3.30.70.360 282 375 1.8E-23 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 111 150 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 SUPERFAMILY SSF53187 382 464 7.11E-65 T 11-11-2016 Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 SUPERFAMILY SSF53187 9 181 7.11E-65 T 11-11-2016 Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 Pfam PF07687 Peptidase dimerisation domain 192 244 5.8E-5 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 Pfam PF07687 Peptidase dimerisation domain 258 370 5.5E-5 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 TIGRFAM TIGR01887 dipeptidaselike: putative dipeptidase 12 460 7.4E-166 T 11-11-2016 IPR010964 Peptidase M20A, peptidase V-related GO:0008270|GO:0016805 Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 Gene3D G3DSA:3.40.630.10 4 181 4.0E-71 T 11-11-2016 Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 Gene3D G3DSA:3.40.630.10 381 465 4.0E-71 T 11-11-2016 Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 Pfam PF01546 Peptidase family M20/M25/M40 81 461 2.9E-36 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS04125 8881dd587342940132975ef27c3abe5c 465 Gene3D G3DSA:3.30.70.360 202 281 1.1E-24 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS04090 e55b6baa9276bb6d536a9cff7a0954a7 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 3.4E-21 T 11-11-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Gferi_RS04090 e55b6baa9276bb6d536a9cff7a0954a7 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 3.4E-21 T 11-11-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Gferi_RS04090 e55b6baa9276bb6d536a9cff7a0954a7 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 3.4E-21 T 11-11-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Gferi_RS04090 e55b6baa9276bb6d536a9cff7a0954a7 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 11-11-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS04090 e55b6baa9276bb6d536a9cff7a0954a7 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 19.772 T 11-11-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Gferi_RS04090 e55b6baa9276bb6d536a9cff7a0954a7 65 Pfam PF01632 Ribosomal protein L35 2 62 5.1E-25 T 11-11-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS04090 e55b6baa9276bb6d536a9cff7a0954a7 65 SUPERFAMILY SSF143034 2 64 4.05E-23 T 11-11-2016 Gferi_RS04090 e55b6baa9276bb6d536a9cff7a0954a7 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 9.1E-27 T 11-11-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Gferi_RS05575 231e5884db1d7ed149133eeb8f6703b7 88 SUPERFAMILY SSF55021 4 74 6.66E-12 T 11-11-2016 Gferi_RS05575 231e5884db1d7ed149133eeb8f6703b7 88 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 8.0E-8 T 11-11-2016 Gferi_RS05575 231e5884db1d7ed149133eeb8f6703b7 88 Gene3D G3DSA:3.30.70.260 1 76 1.5E-16 T 11-11-2016 Gferi_RS05575 231e5884db1d7ed149133eeb8f6703b7 88 Pfam PF13710 ACT domain 12 73 3.7E-14 T 11-11-2016 Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 Pfam PF00248 Aldo/keto reductase family 18 209 8.1E-24 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 SUPERFAMILY SSF54862 250 318 1.41E-15 T 11-11-2016 Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 301 312 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 PRINTS PR00069 Aldo-keto reductase signature 45 69 1.5E-8 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 PRINTS PR00069 Aldo-keto reductase signature 97 115 1.5E-8 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 PRINTS PR00069 Aldo-keto reductase signature 131 148 1.5E-8 T 11-11-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 SUPERFAMILY SSF51430 4 271 8.9E-44 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 Gene3D G3DSA:3.20.20.100 5 214 7.8E-37 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain Gferi_RS26870 7278ec581fb5c8b7b0807d42155b96e4 319 Gene3D G3DSA:3.30.70.20 258 318 2.6E-10 T 11-11-2016 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 SMART SM00388 112 177 1.8E-8 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 Gene3D G3DSA:1.10.287.130 106 165 4.4E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 SUPERFAMILY SSF47384 97 177 2.94E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 SUPERFAMILY SSF55874 167 329 2.75E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 SMART SM00387 222 329 1.3E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 Gene3D G3DSA:3.30.565.10 166 329 6.8E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 Pfam PF00512 His Kinase A (phospho-acceptor) domain 115 177 3.2E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 PRINTS PR00344 Bacterial sensor protein C-terminal signature 259 273 1.4E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 PRINTS PR00344 Bacterial sensor protein C-terminal signature 291 309 1.4E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 PRINTS PR00344 Bacterial sensor protein C-terminal signature 315 328 1.4E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 PRINTS PR00344 Bacterial sensor protein C-terminal signature 277 287 1.4E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS08290 c613dbd0ba7ad5aa8a36fb36be86bc94 329 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 222 328 2.0E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS04805 d5d206669cc7d0cccce8835888f2ff05 179 SUPERFAMILY SSF55469 2 179 5.76E-54 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS04805 d5d206669cc7d0cccce8835888f2ff05 179 Pfam PF00881 Nitroreductase family 5 157 1.8E-30 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS04805 d5d206669cc7d0cccce8835888f2ff05 179 Gene3D G3DSA:3.40.109.10 2 179 4.4E-59 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS24560 85fbd85cd31fe0c14d69f98ef75cab03 225 SMART SM00862 145 220 1.1E-19 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS24560 85fbd85cd31fe0c14d69f98ef75cab03 225 Gene3D G3DSA:3.40.50.2300 1 119 1.0E-38 T 11-11-2016 Gferi_RS24560 85fbd85cd31fe0c14d69f98ef75cab03 225 SMART SM00448 1 112 6.8E-37 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS24560 85fbd85cd31fe0c14d69f98ef75cab03 225 SUPERFAMILY SSF52172 1 175 1.61E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS24560 85fbd85cd31fe0c14d69f98ef75cab03 225 Pfam PF00072 Response regulator receiver domain 3 113 5.1E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS24560 85fbd85cd31fe0c14d69f98ef75cab03 225 Gene3D G3DSA:1.10.10.10 126 222 3.0E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24560 85fbd85cd31fe0c14d69f98ef75cab03 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 219 5.1E-22 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 340 358 3.5E-14 T 11-11-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 321 338 3.5E-14 T 11-11-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 226 246 3.5E-14 T 11-11-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 363 383 3.5E-14 T 11-11-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 188 202 3.5E-14 T 11-11-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 Pfam PF01555 DNA methylase 190 379 4.6E-27 T 11-11-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 SMART SM00470 4 93 3.7E-9 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 SUPERFAMILY SSF53335 159 391 3.22E-57 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 192 198 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 SUPERFAMILY SSF110849 3 113 4.71E-15 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 Gene3D G3DSA:3.90.1530.10 8 93 5.3E-13 T 11-11-2016 Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 Pfam PF02195 ParB-like nuclease domain 7 92 1.7E-10 T 11-11-2016 IPR003115 ParB/Sulfiredoxin Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 Gene3D G3DSA:3.40.50.150 155 398 4.8E-58 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23550 e1e4626bd52e1980edfb7370e6cbfabf 411 PIRSF PIRSF036758 1 401 3.0E-159 T 11-11-2016 IPR015840 DNA methyase, ParB domain-containing Gferi_RS05305 1dda6b666246a097c46e60d7878402d8 597 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS05305 1dda6b666246a097c46e60d7878402d8 597 SUPERFAMILY SSF52540 350 590 6.57E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05305 1dda6b666246a097c46e60d7878402d8 597 Gene3D G3DSA:3.40.50.300 352 584 7.8E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05305 1dda6b666246a097c46e60d7878402d8 597 SMART SM00382 378 566 2.5E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05305 1dda6b666246a097c46e60d7878402d8 597 Gene3D G3DSA:1.20.1560.10 15 329 5.6E-63 T 11-11-2016 Gferi_RS05305 1dda6b666246a097c46e60d7878402d8 597 Pfam PF00005 ABC transporter 369 519 1.1E-24 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS05305 1dda6b666246a097c46e60d7878402d8 597 SUPERFAMILY SSF90123 13 330 1.05E-62 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS05305 1dda6b666246a097c46e60d7878402d8 597 Pfam PF00664 ABC transporter transmembrane region 28 303 2.9E-32 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 Pfam PF00158 Sigma-54 interaction domain 344 511 1.1E-67 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 Gene3D G3DSA:1.10.8.60 518 587 1.3E-10 T 11-11-2016 Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 217 260 1.5E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 SMART SM00382 364 509 7.1E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 Gene3D G3DSA:3.30.450.20 208 297 4.8E-11 T 11-11-2016 Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 SMART SM00091 211 280 5.8E-5 T 11-11-2016 IPR000014 PAS domain Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 368 381 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 Gene3D G3DSA:3.40.50.300 340 516 1.2E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 SUPERFAMILY SSF55785 210 298 3.87E-13 T 11-11-2016 IPR000014 PAS domain Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 Pfam PF13426 PAS domain 222 294 5.1E-8 T 11-11-2016 IPR000014 PAS domain Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 Gene3D G3DSA:1.10.10.10 627 691 5.1E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13980 219a6f808bcb4bc13d9bc9be735b2b50 693 SUPERFAMILY SSF52540 343 567 6.43E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05430 d316e0deba063051c6f046b8d9bfdb54 305 TIGRFAM TIGR02909 spore_YkwD: uncharacterized protein, YkwD family 178 301 3.2E-58 T 11-11-2016 IPR014258 CAP domain, YkwD-like Gferi_RS05430 d316e0deba063051c6f046b8d9bfdb54 305 SUPERFAMILY SSF55797 177 300 8.5E-24 T 11-11-2016 IPR014044 CAP domain Gferi_RS05430 d316e0deba063051c6f046b8d9bfdb54 305 Gene3D G3DSA:3.40.33.10 178 299 5.9E-11 T 11-11-2016 IPR014044 CAP domain Gferi_RS05430 d316e0deba063051c6f046b8d9bfdb54 305 Pfam PF00188 Cysteine-rich secretory protein family 186 300 7.7E-17 T 11-11-2016 IPR014044 CAP domain Gferi_RS20595 e90ed4eb424dc076bcbd3a25f63e7b07 300 Pfam PF02687 FtsX-like permease family 177 299 1.4E-12 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS20595 e90ed4eb424dc076bcbd3a25f63e7b07 300 PIRSF PIRSF003097 2 300 8.8E-85 T 11-11-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 Gferi_RS08570 1b8e5f334bc0b0cda45c95ef46d0ca4f 318 Gene3D G3DSA:3.40.190.10 118 245 1.7E-14 T 11-11-2016 Gferi_RS08570 1b8e5f334bc0b0cda45c95ef46d0ca4f 318 Gene3D G3DSA:3.40.190.10 5 99 7.9E-5 T 11-11-2016 Gferi_RS08570 1b8e5f334bc0b0cda45c95ef46d0ca4f 318 Pfam PF09084 NMT1/THI5 like 48 251 8.7E-20 T 11-11-2016 IPR015168 SsuA/THI5-like Gferi_RS08570 1b8e5f334bc0b0cda45c95ef46d0ca4f 318 SUPERFAMILY SSF53850 36 251 3.03E-32 T 11-11-2016 Gferi_RS12715 be8f1aad948c2e1961b85673175d325c 253 SMART SM01321 9 123 1.1E-36 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS12715 be8f1aad948c2e1961b85673175d325c 253 SUPERFAMILY SSF143422 1 128 5.36E-26 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS12715 be8f1aad948c2e1961b85673175d325c 253 Pfam PF01797 Transposase IS200 like 13 122 1.3E-14 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS12715 be8f1aad948c2e1961b85673175d325c 253 Gene3D G3DSA:3.30.70.1290 12 126 1.2E-14 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS19280 3e3dbc98b07affaba6774523955a6c68 789 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 1 787 2.3E-211 T 11-11-2016 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 Gferi_RS19280 3e3dbc98b07affaba6774523955a6c68 789 Pfam PF02901 Pyruvate formate lyase-like 3 650 5.3E-221 T 11-11-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 Gferi_RS19280 3e3dbc98b07affaba6774523955a6c68 789 SUPERFAMILY SSF51998 2 787 2.87E-226 T 11-11-2016 Gferi_RS19280 3e3dbc98b07affaba6774523955a6c68 789 Pfam PF01228 Glycine radical 667 770 8.7E-28 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 Gferi_RS19280 3e3dbc98b07affaba6774523955a6c68 789 Gene3D G3DSA:3.20.70.20 2 787 3.5E-245 T 11-11-2016 Gferi_RS18795 4243ed102cb485169a82ea8b8e4e3d50 267 PIRSF PIRSF004793 2 263 1.8E-91 T 11-11-2016 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 Gferi_RS18795 4243ed102cb485169a82ea8b8e4e3d50 267 Gene3D G3DSA:3.40.1700.10 108 236 2.9E-51 T 11-11-2016 Gferi_RS18795 4243ed102cb485169a82ea8b8e4e3d50 267 SUPERFAMILY SSF143597 35 237 7.98E-67 T 11-11-2016 Gferi_RS18795 4243ed102cb485169a82ea8b8e4e3d50 267 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 114 232 2.0E-43 T 11-11-2016 IPR003390 DNA integrity scanning protein, DisA, N-terminal Gferi_RS18795 4243ed102cb485169a82ea8b8e4e3d50 267 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 8 251 6.9E-78 T 11-11-2016 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 Gferi_RS06725 a575ea5b3c31fe92f03304279529462c 285 SUPERFAMILY SSF53697 96 257 4.0E-19 T 11-11-2016 Gferi_RS06725 a575ea5b3c31fe92f03304279529462c 285 Gene3D G3DSA:1.10.10.10 4 64 7.5E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06725 a575ea5b3c31fe92f03304279529462c 285 Gene3D G3DSA:3.40.50.10490 65 261 6.9E-24 T 11-11-2016 Gferi_RS06725 a575ea5b3c31fe92f03304279529462c 285 Pfam PF01380 SIS domain 124 240 8.7E-7 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS06725 a575ea5b3c31fe92f03304279529462c 285 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 75 1.8E-19 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Gferi_RS06725 a575ea5b3c31fe92f03304279529462c 285 SUPERFAMILY SSF46689 2 76 3.58E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS25670 128be4f39217bf052b64d326ce13335f 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 183 5.1E-44 T 11-11-2016 IPR001303 Class II aldolase/adducin N-terminal Gferi_RS25670 128be4f39217bf052b64d326ce13335f 215 SMART SM01007 7 184 1.0E-52 T 11-11-2016 IPR001303 Class II aldolase/adducin N-terminal Gferi_RS25670 128be4f39217bf052b64d326ce13335f 215 SUPERFAMILY SSF53639 3 207 5.3E-57 T 11-11-2016 IPR001303 Class II aldolase/adducin N-terminal Gferi_RS25670 128be4f39217bf052b64d326ce13335f 215 Gene3D G3DSA:3.40.225.10 3 206 7.6E-62 T 11-11-2016 IPR001303 Class II aldolase/adducin N-terminal Gferi_RS24895 b67fa918c24a87f0c1e181c63a300c8b 330 SUPERFAMILY SSF52518 1 203 3.59E-69 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS24895 b67fa918c24a87f0c1e181c63a300c8b 330 Pfam PF02780 Transketolase, C-terminal domain 193 311 3.7E-40 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS24895 b67fa918c24a87f0c1e181c63a300c8b 330 Gene3D G3DSA:3.40.50.970 1 195 1.6E-82 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS24895 b67fa918c24a87f0c1e181c63a300c8b 330 Pfam PF02779 Transketolase, pyrimidine binding domain 3 178 1.9E-49 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS24895 b67fa918c24a87f0c1e181c63a300c8b 330 SUPERFAMILY SSF52922 189 321 1.28E-40 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS24895 b67fa918c24a87f0c1e181c63a300c8b 330 Gene3D G3DSA:3.40.50.920 197 320 2.0E-45 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS24895 b67fa918c24a87f0c1e181c63a300c8b 330 SMART SM00861 4 179 3.1E-66 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS26760 29bc61ee5f61bdef56fc0b5e55df56ce 736 Pfam PF02310 B12 binding domain 599 718 2.2E-14 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS26760 29bc61ee5f61bdef56fc0b5e55df56ce 736 SUPERFAMILY SSF51703 3 448 8.11E-171 T 11-11-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS26760 29bc61ee5f61bdef56fc0b5e55df56ce 736 Gene3D G3DSA:3.20.20.440 2 448 1.1E-204 T 11-11-2016 IPR015130 D-Lysine 5,6-aminomutase alpha subunit Gferi_RS26760 29bc61ee5f61bdef56fc0b5e55df56ce 736 Pfam PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase 504 579 1.3E-28 T 11-11-2016 IPR028991 D-lysine 5,6-aminomutase beta subunit KamE, N-terminal GO:0046983 Gferi_RS26760 29bc61ee5f61bdef56fc0b5e55df56ce 736 Gene3D G3DSA:3.40.50.280 594 731 1.6E-37 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS26760 29bc61ee5f61bdef56fc0b5e55df56ce 736 SUPERFAMILY SSF52242 598 728 1.73E-31 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS26760 29bc61ee5f61bdef56fc0b5e55df56ce 736 Pfam PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit 72 442 3.4E-44 T 11-11-2016 IPR015130 D-Lysine 5,6-aminomutase alpha subunit Gferi_RS24695 67b1874cc3e4182edc39faae901627e3 398 Gene3D G3DSA:3.90.1150.10 262 397 7.1E-53 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS24695 67b1874cc3e4182edc39faae901627e3 398 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 395 1.6E-148 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS24695 67b1874cc3e4182edc39faae901627e3 398 TIGRFAM TIGR01328 met_gam_lyase: methionine gamma-lyase 9 398 4.4E-183 T 11-11-2016 IPR006237 L-methionine gamma-lyase GO:0018826 KEGG: 00270+4.4.1.11|KEGG: 00450+4.4.1.11|KEGG: 00920+4.4.1.2 Gferi_RS24695 67b1874cc3e4182edc39faae901627e3 398 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 204 218 - T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS24695 67b1874cc3e4182edc39faae901627e3 398 Gene3D G3DSA:3.40.640.10 10 261 2.7E-98 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS24695 67b1874cc3e4182edc39faae901627e3 398 SUPERFAMILY SSF53383 29 397 7.61E-123 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS24695 67b1874cc3e4182edc39faae901627e3 398 PIRSF PIRSF001434 1 398 3.0E-147 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS17405 0051cbd838b014e60ddc7eb3240d2ce8 96 Gene3D G3DSA:3.30.70.330 1 95 8.7E-38 T 11-11-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 Gferi_RS17405 0051cbd838b014e60ddc7eb3240d2ce8 96 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 5 95 23.029 T 11-11-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17405 0051cbd838b014e60ddc7eb3240d2ce8 96 SUPERFAMILY SSF54189 1 94 1.08E-33 T 11-11-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17405 0051cbd838b014e60ddc7eb3240d2ce8 96 Pfam PF00276 Ribosomal protein L23 6 88 2.8E-35 T 11-11-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17405 0051cbd838b014e60ddc7eb3240d2ce8 96 ProSitePatterns PS00050 Ribosomal protein L23 signature. 77 92 - T 11-11-2016 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Gferi_RS19240 3d2ec6c453eebdb87b3ce2fb84f9dd16 354 SUPERFAMILY SSF52540 6 240 2.54E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19240 3d2ec6c453eebdb87b3ce2fb84f9dd16 354 Pfam PF00005 ABC transporter 26 160 1.9E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19240 3d2ec6c453eebdb87b3ce2fb84f9dd16 354 SMART SM00382 23 209 2.1E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19240 3d2ec6c453eebdb87b3ce2fb84f9dd16 354 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS19240 3d2ec6c453eebdb87b3ce2fb84f9dd16 354 Gene3D G3DSA:3.40.50.300 24 232 2.0E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20470 9eff29043dbd90c802cc1ee983c490da 148 Gene3D G3DSA:3.20.20.70 2 147 2.6E-38 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS20470 9eff29043dbd90c802cc1ee983c490da 148 SUPERFAMILY SSF54631 1 147 2.78E-43 T 11-11-2016 Gferi_RS20470 9eff29043dbd90c802cc1ee983c490da 148 SMART SM00116 100 148 2.1E-14 T 11-11-2016 IPR000644 CBS domain Gferi_RS20470 9eff29043dbd90c802cc1ee983c490da 148 SMART SM00116 10 58 2.1E-12 T 11-11-2016 IPR000644 CBS domain Gferi_RS20470 9eff29043dbd90c802cc1ee983c490da 148 Pfam PF00571 CBS domain 93 147 3.6E-18 T 11-11-2016 IPR000644 CBS domain Gferi_RS20470 9eff29043dbd90c802cc1ee983c490da 148 Pfam PF00571 CBS domain 3 54 2.2E-16 T 11-11-2016 IPR000644 CBS domain Gferi_RS23100 7a3f138fd5b4a4ddc2668059d99118ce 239 Pfam PF00882 Zinc dependent phospholipase C 33 160 6.1E-16 T 11-11-2016 IPR029002 Phospholipase C/D Gferi_RS23100 7a3f138fd5b4a4ddc2668059d99118ce 239 ProDom PD003946 PHOSPHOLIPASE C PLCB HYDROLASE PRECURSOR PHOSPHATIDYLCHOLINE SIGNAL CHOLINEPHOSPHOHYDROLASE TOXIN PLC 33 193 6.0E-6 T 11-11-2016 IPR001531 Phospholipase C domain GO:0004629|GO:0008270 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 Gferi_RS23100 7a3f138fd5b4a4ddc2668059d99118ce 239 SUPERFAMILY SSF48537 24 234 3.53E-40 T 11-11-2016 IPR008947 Phospholipase C/P1 nuclease domain GO:0016788 Gferi_RS23100 7a3f138fd5b4a4ddc2668059d99118ce 239 SMART SM00770 1 237 1.5E-45 T 11-11-2016 IPR001531 Phospholipase C domain GO:0004629|GO:0008270 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 Gferi_RS23100 7a3f138fd5b4a4ddc2668059d99118ce 239 Gene3D G3DSA:1.10.575.10 25 235 9.6E-51 T 11-11-2016 IPR008947 Phospholipase C/P1 nuclease domain GO:0016788 Gferi_RS00470 66d20d76845b423e90b03fc865b64ff6 298 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 281 1.3E-14 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS00470 66d20d76845b423e90b03fc865b64ff6 298 Gene3D G3DSA:1.10.3720.10 5 281 7.8E-54 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS00470 66d20d76845b423e90b03fc865b64ff6 298 SUPERFAMILY SSF161098 8 45 2.52E-56 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS00470 66d20d76845b423e90b03fc865b64ff6 298 SUPERFAMILY SSF161098 77 298 2.52E-56 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS12165 5e8528effe63e321a0e8f064e92a60da 64 TIGRFAM TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain 4 60 8.4E-19 T 11-11-2016 IPR023883 Conserved hypothetical protein CHP03980, redox-disulphide Gferi_RS12165 5e8528effe63e321a0e8f064e92a60da 64 SUPERFAMILY SSF140683 4 62 4.32E-12 T 11-11-2016 Gferi_RS12165 5e8528effe63e321a0e8f064e92a60da 64 Pfam PF08984 Domain of unknown function (DUF1858) 5 56 1.3E-11 T 11-11-2016 IPR015077 Domain of unknown function DUF1858 Gferi_RS13460 63685d5dbbbcd32036ff2f1b49ce5e3b 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 41 299 4.2E-39 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS13460 63685d5dbbbcd32036ff2f1b49ce5e3b 328 PIRSF PIRSF017082 1 313 1.4E-63 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS13460 63685d5dbbbcd32036ff2f1b49ce5e3b 328 SUPERFAMILY SSF53850 104 278 6.81E-8 T 11-11-2016 Gferi_RS18320 e16f3f67a7747a233bc27391c7a15f9d 206 SUPERFAMILY SSF143414 5 95 3.14E-27 T 11-11-2016 Gferi_RS18320 e16f3f67a7747a233bc27391c7a15f9d 206 SMART SM00877 4 81 2.0E-28 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18320 e16f3f67a7747a233bc27391c7a15f9d 206 Pfam PF00936 BMC domain 5 81 1.3E-24 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS20060 b3fee2d90df9980c4d7ff8845ba279ae 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 273 7.2E-30 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20060 b3fee2d90df9980c4d7ff8845ba279ae 278 Gene3D G3DSA:1.10.3720.10 71 271 3.2E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20060 b3fee2d90df9980c4d7ff8845ba279ae 278 SUPERFAMILY SSF161098 71 261 1.07E-24 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20060 b3fee2d90df9980c4d7ff8845ba279ae 278 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 7 44 2.5E-8 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Gferi_RS00025 77de39ffed47a0505cd1592787a8194a 197 SUPERFAMILY SSF69593 4 192 9.55E-51 T 11-11-2016 Gferi_RS00025 77de39ffed47a0505cd1592787a8194a 197 Gene3D G3DSA:3.40.1130.10 1 190 4.7E-33 T 11-11-2016 Gferi_RS00025 77de39ffed47a0505cd1592787a8194a 197 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 21 144 1.9E-32 T 11-11-2016 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS00025 77de39ffed47a0505cd1592787a8194a 197 Pfam PF01553 Acyltransferase 20 144 5.6E-27 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Gferi_RS00025 77de39ffed47a0505cd1592787a8194a 197 SMART SM00563 35 147 4.5E-31 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 Gferi_RS11965 b1c394e18e040c4fda07fea47760312c 193 Pfam PF14014 Protein of unknown function (DUF4230) 42 190 6.9E-33 T 11-11-2016 IPR025324 Protein of unknown function DUF4230 Gferi_RS05735 6e97df96bdd795e1d18ace2f788cc0a7 274 Pfam PF01177 Asp/Glu/Hydantoin racemase 6 214 4.5E-33 T 11-11-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS05735 6e97df96bdd795e1d18ace2f788cc0a7 274 Gene3D G3DSA:3.40.50.1860 2 174 3.4E-53 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS05735 6e97df96bdd795e1d18ace2f788cc0a7 274 SUPERFAMILY SSF53681 5 106 3.24E-33 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS05735 6e97df96bdd795e1d18ace2f788cc0a7 274 TIGRFAM TIGR00067 glut_race: glutamate racemase 6 251 4.8E-66 T 11-11-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS05735 6e97df96bdd795e1d18ace2f788cc0a7 274 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 183 193 - T 11-11-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS05735 6e97df96bdd795e1d18ace2f788cc0a7 274 Hamap MF_00258 Glutamate racemase [murI]. 4 257 33.692 T 11-11-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS05735 6e97df96bdd795e1d18ace2f788cc0a7 274 SUPERFAMILY SSF53681 112 258 6.54E-32 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS09890 be0b729d51599a1cea1f07b490fea35d 327 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 29 282 1.1E-75 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS09890 be0b729d51599a1cea1f07b490fea35d 327 PIRSF PIRSF006470 5 325 7.7E-100 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS09890 be0b729d51599a1cea1f07b490fea35d 327 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 29 310 4.8E-87 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS04885 c968e17a3c9b7efb70ae7eb91af5ddee 228 SUPERFAMILY SSF51206 4 146 6.81E-30 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS04885 c968e17a3c9b7efb70ae7eb91af5ddee 228 Pfam PF00027 Cyclic nucleotide-binding domain 37 124 7.4E-17 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS04885 c968e17a3c9b7efb70ae7eb91af5ddee 228 Gene3D G3DSA:1.10.10.10 154 226 5.7E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04885 c968e17a3c9b7efb70ae7eb91af5ddee 228 SMART SM00100 15 136 9.2E-9 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS04885 c968e17a3c9b7efb70ae7eb91af5ddee 228 Pfam PF13545 Crp-like helix-turn-helix domain 156 222 7.6E-13 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS04885 c968e17a3c9b7efb70ae7eb91af5ddee 228 SUPERFAMILY SSF46785 155 226 5.99E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04885 c968e17a3c9b7efb70ae7eb91af5ddee 228 Gene3D G3DSA:2.60.120.10 10 151 3.2E-31 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS14505 6a61dc8d3ce0b44fca7aeca40978a4ea 355 Pfam PF04865 Baseplate J-like protein 59 315 2.0E-65 T 11-11-2016 IPR006949 Baseplate protein J-like Gferi_RS25525 b97332c77db97cba8cf6b9fc613366fe 242 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 241 8.5E-80 T 11-11-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS25525 b97332c77db97cba8cf6b9fc613366fe 242 Gene3D G3DSA:3.40.50.1360 1 241 8.5E-92 T 11-11-2016 Gferi_RS25525 b97332c77db97cba8cf6b9fc613366fe 242 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 17 224 3.7E-22 T 11-11-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 Gferi_RS25525 b97332c77db97cba8cf6b9fc613366fe 242 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 241 38.605 T 11-11-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS25525 b97332c77db97cba8cf6b9fc613366fe 242 SUPERFAMILY SSF100950 1 241 5.58E-88 T 11-11-2016 Gferi_RS25525 b97332c77db97cba8cf6b9fc613366fe 242 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 120 138 - T 11-11-2016 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 Gferi_RS08665 8a24e8cc0d97c5dcad81ba55ba9feb87 507 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 16 442 3.0E-128 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane Gferi_RS24445 7e64b80309efe9912ca22e77fe929c60 319 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 297 8.5E-37 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS08935 e190a3b129b63ae4a6e09fc0c9c11d19 376 SUPERFAMILY SSF56300 4 275 2.35E-42 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS08935 e190a3b129b63ae4a6e09fc0c9c11d19 376 Pfam PF00149 Calcineurin-like phosphoesterase 4 194 7.9E-14 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS08935 e190a3b129b63ae4a6e09fc0c9c11d19 376 Gene3D G3DSA:3.60.21.10 4 236 1.1E-42 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS18875 70b3091571ed20a90eaed1b45faf432f 346 PIRSF PIRSF017617 1 346 1.8E-116 T 11-11-2016 IPR023603 Threonine aldolase Gferi_RS18875 70b3091571ed20a90eaed1b45faf432f 346 SUPERFAMILY SSF53383 5 342 5.92E-101 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS18875 70b3091571ed20a90eaed1b45faf432f 346 Gene3D G3DSA:3.90.1150.10 251 343 8.5E-23 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS18875 70b3091571ed20a90eaed1b45faf432f 346 Gene3D G3DSA:3.40.640.10 2 248 6.8E-76 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS18875 70b3091571ed20a90eaed1b45faf432f 346 Pfam PF01212 Beta-eliminating lyase 6 287 2.0E-86 T 11-11-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 Pfam PF00072 Response regulator receiver domain 4 116 5.0E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 SUPERFAMILY SSF46689 484 532 4.93E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 Gene3D G3DSA:1.10.10.60 429 484 4.3E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 SUPERFAMILY SSF46689 432 481 2.33E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 Gene3D G3DSA:1.10.10.60 485 532 9.4E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 Gene3D G3DSA:3.40.50.2300 1 125 5.5E-32 T 11-11-2016 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 485 527 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 SMART SM00342 448 531 6.9E-32 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 SMART SM00448 2 116 5.4E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 SUPERFAMILY SSF52172 1 134 1.1E-32 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS14185 8e546d2ae2744a2a2b32841fa16a498a 535 Pfam PF12833 Helix-turn-helix domain 456 532 3.6E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS05870 f2f2c32134688d7eee2cd2b79168bfb0 341 SUPERFAMILY SSF141986 194 331 7.06E-30 T 11-11-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain Gferi_RS05870 f2f2c32134688d7eee2cd2b79168bfb0 341 Gene3D G3DSA:3.40.50.10740 3 162 5.1E-36 T 11-11-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain Gferi_RS05870 f2f2c32134688d7eee2cd2b79168bfb0 341 SUPERFAMILY SSF52317 2 162 9.61E-38 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS05870 f2f2c32134688d7eee2cd2b79168bfb0 341 Gene3D G3DSA:3.50.30.60 202 334 4.8E-30 T 11-11-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain Gferi_RS05870 f2f2c32134688d7eee2cd2b79168bfb0 341 Pfam PF02016 LD-carboxypeptidase 14 327 1.1E-71 T 11-11-2016 IPR003507 Peptidase family S66 Gferi_RS05870 f2f2c32134688d7eee2cd2b79168bfb0 341 PIRSF PIRSF028757 2 340 1.2E-65 T 11-11-2016 IPR003507 Peptidase family S66 Gferi_RS03095 e6683edc1d21d9463071f406af74969e 205 SUPERFAMILY SSF100950 5 153 2.43E-6 T 11-11-2016 Gferi_RS03095 e6683edc1d21d9463071f406af74969e 205 PIRSF PIRSF020269 1 205 8.6E-67 T 11-11-2016 IPR009501 Uncharacterised conserved protein UCP020269 Gferi_RS03095 e6683edc1d21d9463071f406af74969e 205 Pfam PF02589 Uncharacterised ACR, YkgG family COG1556 6 199 7.5E-47 T 11-11-2016 IPR003741 LUD domain Gferi_RS03095 e6683edc1d21d9463071f406af74969e 205 Gene3D G3DSA:3.40.50.10420 4 153 8.9E-10 T 11-11-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain Gferi_RS05215 996710b3dfb2106c19cde0ad4a5d2390 336 Pfam PF09084 NMT1/THI5 like 70 271 2.8E-9 T 11-11-2016 IPR015168 SsuA/THI5-like Gferi_RS05215 996710b3dfb2106c19cde0ad4a5d2390 336 Gene3D G3DSA:3.40.190.10 135 256 3.1E-11 T 11-11-2016 Gferi_RS05215 996710b3dfb2106c19cde0ad4a5d2390 336 SUPERFAMILY SSF53850 66 319 9.71E-29 T 11-11-2016 Gferi_RS05215 996710b3dfb2106c19cde0ad4a5d2390 336 PIRSF PIRSF027386 1 336 7.4E-124 T 11-11-2016 IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type Gferi_RS24310 bb935ad1ca9e1cb3146925ecd3c2eafc 429 SUPERFAMILY SSF53383 1 427 2.19E-131 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS24310 bb935ad1ca9e1cb3146925ecd3c2eafc 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 426 1.3E-196 T 11-11-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Gferi_RS24310 bb935ad1ca9e1cb3146925ecd3c2eafc 429 Gene3D G3DSA:3.90.1150.10 322 426 1.9E-42 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS24310 bb935ad1ca9e1cb3146925ecd3c2eafc 429 Gene3D G3DSA:3.90.1150.10 3 71 1.9E-42 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS24310 bb935ad1ca9e1cb3146925ecd3c2eafc 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 428 103.356 T 11-11-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 Gferi_RS24310 bb935ad1ca9e1cb3146925ecd3c2eafc 429 Gene3D G3DSA:3.40.640.10 72 318 8.4E-85 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS24310 bb935ad1ca9e1cb3146925ecd3c2eafc 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS24310 bb935ad1ca9e1cb3146925ecd3c2eafc 429 Pfam PF00202 Aminotransferase class-III 36 398 2.2E-73 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Gferi_RS00425 f081f9ebba4505eb296d21fd252c5066 125 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 5 28 7.4E-7 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00425 f081f9ebba4505eb296d21fd252c5066 125 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00425 f081f9ebba4505eb296d21fd252c5066 125 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 28 1.4E-5 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS18555 462acce9faecc1434244802e8362342c 611 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 507 572 3.4E-20 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS18555 462acce9faecc1434244802e8362342c 611 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 276 6.5E-6 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS18555 462acce9faecc1434244802e8362342c 611 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS18555 462acce9faecc1434244802e8362342c 611 Pfam PF00005 ABC transporter 305 456 2.7E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS18555 462acce9faecc1434244802e8362342c 611 Pfam PF00005 ABC transporter 28 184 8.3E-26 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS18555 462acce9faecc1434244802e8362342c 611 Gene3D G3DSA:3.40.50.300 6 261 1.3E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18555 462acce9faecc1434244802e8362342c 611 SUPERFAMILY SSF52540 6 255 1.93E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18555 462acce9faecc1434244802e8362342c 611 SUPERFAMILY SSF52540 277 527 1.33E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18555 462acce9faecc1434244802e8362342c 611 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 505 592 4.3E-28 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS18555 462acce9faecc1434244802e8362342c 611 ProSitePatterns PS00211 ABC transporters family signature. 428 442 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS18555 462acce9faecc1434244802e8362342c 611 Gene3D G3DSA:3.40.50.300 274 531 1.3E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18555 462acce9faecc1434244802e8362342c 611 SMART SM00382 313 505 7.8E-16 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS18555 462acce9faecc1434244802e8362342c 611 SMART SM00382 33 233 1.7E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 PRINTS PR00987 Glutamyl-tRNA synthetase signature 199 209 5.3E-8 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 PRINTS PR00987 Glutamyl-tRNA synthetase signature 49 62 5.3E-8 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 32 5.3E-8 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 17 326 3.4E-110 T 11-11-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Gene3D G3DSA:3.40.50.620 17 85 2.1E-42 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Gene3D G3DSA:3.40.50.620 201 251 2.1E-42 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 SUPERFAMILY SSF52374 17 335 4.02E-100 T 11-11-2016 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 329 523 3.5E-59 T 11-11-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 17 546 8.2E-233 T 11-11-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 SUPERFAMILY SSF50715 329 543 1.83E-69 T 11-11-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 544 50.728 T 11-11-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Gene3D G3DSA:1.10.1160.10 252 327 4.9E-37 T 11-11-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 23 34 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Gene3D G3DSA:2.40.240.10 337 451 5.4E-50 T 11-11-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Gene3D G3DSA:2.40.240.10 452 542 1.6E-29 T 11-11-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Gferi_RS15295 010837a9df6f5b4eb6085c3c881eea39 550 Gene3D G3DSA:3.90.800.10 90 198 6.9E-48 T 11-11-2016 Gferi_RS21450 0c67aeaaa29406de8a2a127c506912b4 196 Pfam PF00027 Cyclic nucleotide-binding domain 37 116 1.2E-8 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS21450 0c67aeaaa29406de8a2a127c506912b4 196 Gene3D G3DSA:1.10.10.10 154 193 8.0E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21450 0c67aeaaa29406de8a2a127c506912b4 196 SUPERFAMILY SSF51206 18 137 1.7E-18 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS21450 0c67aeaaa29406de8a2a127c506912b4 196 Gene3D G3DSA:2.60.120.10 7 153 8.3E-30 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS02170 e05869df7c89bf456183ffc311a326ce 237 Pfam PF12847 Methyltransferase domain 3 153 1.7E-57 T 11-11-2016 Gferi_RS02170 e05869df7c89bf456183ffc311a326ce 237 SUPERFAMILY SSF53335 7 104 8.79E-14 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS02170 e05869df7c89bf456183ffc311a326ce 237 PIRSF PIRSF018637 1 229 1.5E-77 T 11-11-2016 IPR006901 tRNA methyltransferase TrmK GO:0016429 Gferi_RS02170 e05869df7c89bf456183ffc311a326ce 237 Gene3D G3DSA:3.40.50.150 11 150 9.2E-15 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS06070 23156cfae2f11c7c7317588f44d610cd 149 Gene3D G3DSA:3.30.70.920 81 141 2.0E-4 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Gferi_RS06070 23156cfae2f11c7c7317588f44d610cd 149 Gene3D G3DSA:1.10.10.10 1 80 6.5E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13355 0f024a35d765d69928df6ba7870e5aaa 382 Gene3D G3DSA:3.90.1150.10 255 375 3.0E-21 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS13355 0f024a35d765d69928df6ba7870e5aaa 382 Gene3D G3DSA:3.40.640.10 14 254 1.0E-75 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS13355 0f024a35d765d69928df6ba7870e5aaa 382 SUPERFAMILY SSF53383 1 380 5.53E-106 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS13355 0f024a35d765d69928df6ba7870e5aaa 382 TIGRFAM TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein 2 376 2.4E-154 T 11-11-2016 IPR010969 Cysteine desulfurase-related, unknown function Gferi_RS13355 0f024a35d765d69928df6ba7870e5aaa 382 Pfam PF00266 Aminotransferase class-V 2 368 5.2E-100 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS13355 0f024a35d765d69928df6ba7870e5aaa 382 PIRSF PIRSF005572 1 382 6.1E-64 T 11-11-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 Gferi_RS12190 f39d1c3e5f9fcd8e22c2e425ea18a098 300 Pfam PF04468 PSP1 C-terminal conserved region 61 146 3.3E-32 T 11-11-2016 IPR007557 PSP1, C-terminal Gferi_RS09055 67de92d1022e4ae5e53a43b85c6c512e 187 Pfam PF10263 SprT-like family 29 162 1.1E-16 T 11-11-2016 IPR006640 SprT-like Gferi_RS09055 67de92d1022e4ae5e53a43b85c6c512e 187 SMART SM00731 24 173 3.0E-8 T 11-11-2016 IPR006640 SprT-like Gferi_RS26880 b8b13463ff4669493074be3992ba96fb 88 Pfam PF06949 Protein of unknown function (DUF1292) 12 79 4.0E-15 T 11-11-2016 IPR009711 Uncharacterised protein family UPF0473 Gferi_RS26880 b8b13463ff4669493074be3992ba96fb 88 Hamap MF_01448 UPF0473 protein . 3 81 12.178 T 11-11-2016 IPR009711 Uncharacterised protein family UPF0473 Gferi_RS08125 164a3d0316d5fdb14696be62eb577ffe 272 SUPERFAMILY SSF161098 66 253 2.22E-23 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08125 164a3d0316d5fdb14696be62eb577ffe 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 270 7.7E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08125 164a3d0316d5fdb14696be62eb577ffe 272 Gene3D G3DSA:1.10.3720.10 65 269 7.0E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 387 6.7E-10 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 Gene3D G3DSA:3.40.1390.10 19 94 2.5E-22 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 SUPERFAMILY SSF53623 106 314 2.75E-52 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 Gene3D G3DSA:3.40.1190.10 95 314 2.5E-63 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 SUPERFAMILY SSF53244 319 456 1.24E-29 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 32 456 6.1E-125 T 11-11-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 Pfam PF08245 Mur ligase middle domain 111 298 1.9E-45 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 Gene3D G3DSA:3.90.190.20 318 459 8.7E-36 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 Pfam PF01225 Mur ligase family, catalytic domain 27 101 5.9E-11 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 457 32.342 T 11-11-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS02885 e924c8a7ab6d918a578db0bb43a8fc78 470 SUPERFAMILY SSF63418 20 101 7.72E-24 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Gferi_RS11380 6b80fd88e487e3944348291d9163cd0e 379 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 26 374 2.4E-102 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Gferi_RS11380 6b80fd88e487e3944348291d9163cd0e 379 Gene3D G3DSA:3.90.1150.10 258 378 4.5E-46 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS11380 6b80fd88e487e3944348291d9163cd0e 379 PIRSF PIRSF000390 8 378 5.5E-108 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Gferi_RS11380 6b80fd88e487e3944348291d9163cd0e 379 SUPERFAMILY SSF53383 25 376 3.13E-108 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS11380 6b80fd88e487e3944348291d9163cd0e 379 Gene3D G3DSA:3.40.640.10 13 256 1.7E-99 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS22810 47302a106e8153f1927dfb04e69698c4 366 Pfam PF02424 ApbE family 68 338 4.1E-59 T 11-11-2016 IPR024932 Flavin transferase ApbE GO:0017013 Gferi_RS22810 47302a106e8153f1927dfb04e69698c4 366 SUPERFAMILY SSF143631 41 355 3.92E-73 T 11-11-2016 IPR003374 ApbE-like domain Gferi_RS22810 47302a106e8153f1927dfb04e69698c4 366 PIRSF PIRSF006268 3 359 5.7E-77 T 11-11-2016 IPR024932 Flavin transferase ApbE GO:0017013 Gferi_RS03835 e8e0a4953283762db75c7c62d99a4068 158 Pfam PF12687 Protein of unknown function (DUF3801) 22 139 1.4E-26 T 11-11-2016 IPR024234 Protein of unknown function DUF3801 Gferi_RS25855 f1b3c2abb49f0f23603cb65f85b70665 254 SUPERFAMILY SSF51366 1 251 9.42E-78 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Gferi_RS25855 f1b3c2abb49f0f23603cb65f85b70665 254 Pfam PF00977 Histidine biosynthesis protein 5 234 4.1E-82 T 11-11-2016 IPR006062 Histidine biosynthesis GO:0000105 Gferi_RS25855 f1b3c2abb49f0f23603cb65f85b70665 254 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 46.077 T 11-11-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Gferi_RS25855 f1b3c2abb49f0f23603cb65f85b70665 254 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 1.9E-109 T 11-11-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Gferi_RS25855 f1b3c2abb49f0f23603cb65f85b70665 254 Gene3D G3DSA:3.20.20.70 4 251 2.6E-96 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 Gene3D G3DSA:3.40.640.10 43 272 2.2E-71 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 Gene3D G3DSA:3.90.1150.10 273 392 1.1E-40 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 SUPERFAMILY SSF53383 2 391 7.53E-112 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 232 245 - T 11-11-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 160 184 1.1E-11 T 11-11-2016 Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 91 111 1.1E-11 T 11-11-2016 Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 226 250 1.1E-11 T 11-11-2016 Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 113 134 1.1E-11 T 11-11-2016 Gferi_RS18530 d352a5f495971b275126b9110ecf3cfa 392 Pfam PF00155 Aminotransferase class I and II 30 384 1.2E-72 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS12100 94c3f188e6c65bc844f5902d74695141 290 Gene3D G3DSA:1.10.8.100 214 285 2.7E-20 T 11-11-2016 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201 Gferi_RS12100 94c3f188e6c65bc844f5902d74695141 290 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 19 284 56.043 T 11-11-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Gferi_RS12100 94c3f188e6c65bc844f5902d74695141 290 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 19 281 1.9E-84 T 11-11-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Gferi_RS12100 94c3f188e6c65bc844f5902d74695141 290 SUPERFAMILY SSF53335 16 285 2.05E-74 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS12100 94c3f188e6c65bc844f5902d74695141 290 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 51 78 - T 11-11-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 Gferi_RS12100 94c3f188e6c65bc844f5902d74695141 290 Gene3D G3DSA:3.40.50.150 5 208 1.3E-76 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS12100 94c3f188e6c65bc844f5902d74695141 290 Pfam PF00398 Ribosomal RNA adenine dimethylase 19 274 5.2E-68 T 11-11-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Gferi_RS12100 94c3f188e6c65bc844f5902d74695141 290 SMART SM00650 35 210 2.2E-74 T 11-11-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 Gferi_RS03960 45530bf2c8ccf741b262f1f8597854ba 192 SUPERFAMILY SSF53323 4 191 3.92E-43 T 11-11-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Gferi_RS03960 45530bf2c8ccf741b262f1f8597854ba 192 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 13 189 4.8E-39 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS03960 45530bf2c8ccf741b262f1f8597854ba 192 Gene3D G3DSA:3.40.920.10 4 192 3.9E-41 T 11-11-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Gferi_RS10755 4d36cff6be85834d1348065c3d79c659 271 SUPERFAMILY SSF64518 1 271 1.96E-94 T 11-11-2016 Gferi_RS10755 4d36cff6be85834d1348065c3d79c659 271 Pfam PF00700 Bacterial flagellin C-terminal helical region 186 270 5.5E-27 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS10755 4d36cff6be85834d1348065c3d79c659 271 PRINTS PR00207 Flagellin signature 74 93 4.6E-23 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS10755 4d36cff6be85834d1348065c3d79c659 271 PRINTS PR00207 Flagellin signature 35 52 4.6E-23 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS10755 4d36cff6be85834d1348065c3d79c659 271 PRINTS PR00207 Flagellin signature 109 132 4.6E-23 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 Gferi_RS10755 4d36cff6be85834d1348065c3d79c659 271 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 140 4.5E-41 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS10755 4d36cff6be85834d1348065c3d79c659 271 Gene3D G3DSA:1.20.1330.10 52 227 7.3E-66 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 Gferi_RS00260 c749bbbfcdbbca9f8fa881cf2636973a 147 Pfam PF02681 Divergent PAP2 family 9 142 1.7E-50 T 11-11-2016 IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase-related Gferi_RS00615 6d1df2d2623b52c8d1d74ae8eda7bccd 86 Pfam PF04232 Stage V sporulation protein S (SpoVS) 2 84 1.3E-40 T 11-11-2016 IPR007347 Sporulation stage V, protein S Gferi_RS00615 6d1df2d2623b52c8d1d74ae8eda7bccd 86 ProDom PD061837 SPORULATION V STAGE S SPOVS-RELATED SPOVS CELL SEPTATION SPOVS3 RELATED 3 86 7.0E-33 T 11-11-2016 IPR007347 Sporulation stage V, protein S Gferi_RS19355 4c7bb8434ce8aad7e0139ef8b0596597 241 Gene3D G3DSA:1.10.1660.10 60 115 1.5E-9 T 11-11-2016 Gferi_RS19355 4c7bb8434ce8aad7e0139ef8b0596597 241 Gene3D G3DSA:1.10.1660.10 1 59 2.7E-23 T 11-11-2016 Gferi_RS19355 4c7bb8434ce8aad7e0139ef8b0596597 241 Pfam PF13411 MerR HTH family regulatory protein 5 73 1.7E-16 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS19355 4c7bb8434ce8aad7e0139ef8b0596597 241 SMART SM00422 5 74 6.8E-22 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS19355 4c7bb8434ce8aad7e0139ef8b0596597 241 SUPERFAMILY SSF46955 5 116 1.76E-24 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS19355 4c7bb8434ce8aad7e0139ef8b0596597 241 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 1.4E-6 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS19355 4c7bb8434ce8aad7e0139ef8b0596597 241 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 1.4E-6 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS19355 4c7bb8434ce8aad7e0139ef8b0596597 241 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 41 61 1.4E-6 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS14665 5fded3327e70ad0a7b322d27bee192cc 323 Pfam PF14697 4Fe-4S dicluster domain 264 313 7.9E-9 T 11-11-2016 Gferi_RS14665 5fded3327e70ad0a7b322d27bee192cc 323 Gene3D G3DSA:3.30.70.20 255 317 1.5E-16 T 11-11-2016 Gferi_RS14665 5fded3327e70ad0a7b322d27bee192cc 323 SUPERFAMILY SSF54862 260 316 1.84E-18 T 11-11-2016 Gferi_RS14665 5fded3327e70ad0a7b322d27bee192cc 323 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 298 309 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 Pfam PF13534 4Fe-4S dicluster domain 302 364 3.5E-6 T 11-11-2016 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 SUPERFAMILY SSF46548 241 371 1.2E-8 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 PRINTS PR00419 Adrenodoxin reductase family signature 110 132 5.2E-6 T 11-11-2016 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 PRINTS PR00419 Adrenodoxin reductase family signature 133 146 5.2E-6 T 11-11-2016 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 7 92 7.7E-18 T 11-11-2016 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 Pfam PF02754 Cysteine-rich domain 564 641 4.8E-4 T 11-11-2016 IPR004017 Cysteine-rich domain Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 Pfam PF02754 Cysteine-rich domain 443 528 2.7E-5 T 11-11-2016 IPR004017 Cysteine-rich domain Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 SUPERFAMILY SSF51971 63 260 4.71E-22 T 11-11-2016 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 Gene3D G3DSA:1.10.1060.10 7 110 3.5E-21 T 11-11-2016 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 Gene3D G3DSA:1.10.1060.10 290 389 1.1E-11 T 11-11-2016 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 Pfam PF13450 NAD(P)-binding Rossmann-like domain 113 154 1.7E-12 T 11-11-2016 Gferi_RS19175 ebc66d956097c61bbfe000dbea6f52fe 788 Gene3D G3DSA:3.40.50.720 111 232 3.5E-26 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS24655 77d91a459a07e9290a52bb33ed09356c 268 Gene3D G3DSA:3.40.50.720 1 221 1.1E-18 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS24655 77d91a459a07e9290a52bb33ed09356c 268 Pfam PF04321 RmlD substrate binding domain 89 227 1.1E-12 T 11-11-2016 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581 Gferi_RS24655 77d91a459a07e9290a52bb33ed09356c 268 SUPERFAMILY SSF51735 1 228 6.47E-27 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 Pfam PF10502 Signal peptidase, peptidase S26 49 168 4.3E-15 T 11-11-2016 IPR019533 Peptidase S26 Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 ProSitePatterns PS00761 Signal peptidases I signature 3. 140 153 - T 11-11-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 8 175 1.2E-42 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 ProSitePatterns PS00760 Signal peptidases I lysine active site. 92 104 - T 11-11-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 SUPERFAMILY SSF51306 23 181 7.67E-45 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 ProSitePatterns PS00501 Signal peptidases I serine active site. 33 40 - T 11-11-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 90 102 2.9E-20 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 135 154 2.9E-20 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 24 40 2.9E-20 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 Gene3D G3DSA:2.10.109.10 23 100 6.4E-34 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS09375 239f15ff41305dd692d3f3e857c69cc0 182 Gene3D G3DSA:2.10.109.10 135 181 6.4E-34 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 86 112 3.0E-31 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 3.0E-31 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 430 450 3.0E-31 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 3.0E-31 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 313 332 3.0E-31 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 390 410 3.0E-31 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 SUPERFAMILY SSF161070 5 483 1.96E-145 T 11-11-2016 Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 Pfam PF00209 Sodium:neurotransmitter symporter family 125 483 6.3E-78 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS09150 e20b8579e3c17d02cac70ff0b7ad62bc 501 Pfam PF00209 Sodium:neurotransmitter symporter family 5 121 1.1E-33 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS19205 e23ae11fa3ac2455b70ad7f4f7b1d284 352 Pfam PF02625 XdhC and CoxI family 13 70 4.0E-12 T 11-11-2016 IPR003777 XdhC- CoxI Gferi_RS19205 e23ae11fa3ac2455b70ad7f4f7b1d284 352 SUPERFAMILY SSF51735 194 287 5.35E-8 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19205 e23ae11fa3ac2455b70ad7f4f7b1d284 352 Gene3D G3DSA:3.40.50.720 195 319 3.8E-7 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19205 e23ae11fa3ac2455b70ad7f4f7b1d284 352 Pfam PF13478 XdhC Rossmann domain 198 340 2.0E-44 T 11-11-2016 IPR027051 XdhC Rossmann domain Gferi_RS26210 bec6fefa1a080a3a1b67140b8c6d7461 243 Pfam PF02811 PHP domain 7 95 3.9E-8 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS26210 bec6fefa1a080a3a1b67140b8c6d7461 243 Gene3D G3DSA:3.20.20.140 119 225 3.6E-24 T 11-11-2016 Gferi_RS26210 bec6fefa1a080a3a1b67140b8c6d7461 243 Gene3D G3DSA:3.20.20.140 5 86 3.6E-24 T 11-11-2016 Gferi_RS26210 bec6fefa1a080a3a1b67140b8c6d7461 243 SMART SM00481 6 74 9.1E-9 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS26210 bec6fefa1a080a3a1b67140b8c6d7461 243 SUPERFAMILY SSF89550 129 238 1.7E-32 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS26210 bec6fefa1a080a3a1b67140b8c6d7461 243 SUPERFAMILY SSF89550 5 84 1.7E-32 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS20190 d15c4fc75f2dec58eb25c304c2ecbcf0 467 Pfam PF07664 Ferrous iron transport protein B C terminus 254 301 1.4E-13 T 11-11-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Gferi_RS20190 d15c4fc75f2dec58eb25c304c2ecbcf0 467 Pfam PF07670 Nucleoside recognition 140 228 3.9E-7 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS20190 d15c4fc75f2dec58eb25c304c2ecbcf0 467 Pfam PF07670 Nucleoside recognition 312 435 6.7E-14 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS06995 ea70147dd50006cb30e6d8fe166de87d 577 Pfam PF01391 Collagen triple helix repeat (20 copies) 225 283 1.1E-7 T 11-11-2016 IPR008160 Collagen triple helix repeat Gferi_RS06995 ea70147dd50006cb30e6d8fe166de87d 577 Pfam PF01391 Collagen triple helix repeat (20 copies) 177 235 3.8E-8 T 11-11-2016 IPR008160 Collagen triple helix repeat Gferi_RS06995 ea70147dd50006cb30e6d8fe166de87d 577 SUPERFAMILY SSF51126 473 562 4.85E-7 T 11-11-2016 IPR011050 Pectin lyase fold/virulence factor Gferi_RS06995 ea70147dd50006cb30e6d8fe166de87d 577 SUPERFAMILY SSF51126 301 441 4.85E-7 T 11-11-2016 IPR011050 Pectin lyase fold/virulence factor Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 PRINTS PR00338 Transcription termination factor NUSG signature 59 71 4.7E-19 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 PRINTS PR00338 Transcription termination factor NUSG signature 130 145 4.7E-19 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 PRINTS PR00338 Transcription termination factor NUSG signature 148 164 4.7E-19 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 Pfam PF02357 Transcription termination factor nusG 6 108 3.3E-32 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 SMART SM00738 4 112 4.9E-49 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 7 172 5.7E-64 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 4 172 25.098 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 ProSitePatterns PS01014 Transcription termination factor nusG signature. 155 164 - T 11-11-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 Gene3D G3DSA:2.30.30.30 112 172 1.4E-27 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 SMART SM00739 118 145 9.7E-5 T 11-11-2016 IPR005824 KOW Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 Pfam PF00467 KOW motif 121 151 1.2E-6 T 11-11-2016 IPR005824 KOW Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 Gene3D G3DSA:3.30.70.940 5 108 1.0E-46 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 SUPERFAMILY SSF50104 116 172 3.1E-18 T 11-11-2016 IPR008991 Translation protein SH3-like domain Gferi_RS17320 6b0a9247c148fe3b94e3ea4a02f2f183 172 SUPERFAMILY SSF82679 5 108 4.05E-41 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Gferi_RS08325 a9cdfad51ca7a82855a5de17a859d026 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 9.8E-11 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS08325 a9cdfad51ca7a82855a5de17a859d026 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 9.8E-11 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS08325 a9cdfad51ca7a82855a5de17a859d026 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 9.8E-11 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS08325 a9cdfad51ca7a82855a5de17a859d026 306 SMART SM01130 4 295 2.1E-64 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS08325 a9cdfad51ca7a82855a5de17a859d026 306 Gene3D G3DSA:3.20.20.70 2 297 3.1E-74 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS08325 a9cdfad51ca7a82855a5de17a859d026 306 SUPERFAMILY SSF51569 3 294 5.44E-67 T 11-11-2016 Gferi_RS08325 a9cdfad51ca7a82855a5de17a859d026 306 PIRSF PIRSF001365 1 305 3.0E-66 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS08325 a9cdfad51ca7a82855a5de17a859d026 306 Pfam PF00701 Dihydrodipicolinate synthetase family 6 291 4.2E-47 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 Gferi_RS09530 8be34631c5ccb8f0b62bf0c1f428a5b0 485 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 12 476 1.8E-203 T 11-11-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Gferi_RS09530 8be34631c5ccb8f0b62bf0c1f428a5b0 485 Gene3D G3DSA:3.90.1300.10 2 483 3.6E-186 T 11-11-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Gferi_RS09530 8be34631c5ccb8f0b62bf0c1f428a5b0 485 SUPERFAMILY SSF75304 1 483 1.7E-171 T 11-11-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Gferi_RS09530 8be34631c5ccb8f0b62bf0c1f428a5b0 485 ProSitePatterns PS00571 Amidases signature. 152 183 - T 11-11-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 Gferi_RS09530 8be34631c5ccb8f0b62bf0c1f428a5b0 485 Pfam PF01425 Amidase 24 466 1.3E-165 T 11-11-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Gferi_RS09530 8be34631c5ccb8f0b62bf0c1f428a5b0 485 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 11 477 96.543 T 11-11-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Gferi_RS14320 8a30fe1591deec769a878243443cb00a 165 SUPERFAMILY SSF55136 7 165 4.19E-7 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS14320 8a30fe1591deec769a878243443cb00a 165 Gene3D G3DSA:3.20.80.10 7 165 1.2E-4 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 84 215 3.5E-18 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 SUPERFAMILY SSF52540 44 283 1.11E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 PRINTS PR00819 CbxX/CfqX superfamily signature 203 222 1.7E-61 T 11-11-2016 IPR000641 CbxX/CfqX GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 PRINTS PR00819 CbxX/CfqX superfamily signature 135 154 1.7E-61 T 11-11-2016 IPR000641 CbxX/CfqX GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 PRINTS PR00819 CbxX/CfqX superfamily signature 165 177 1.7E-61 T 11-11-2016 IPR000641 CbxX/CfqX GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 PRINTS PR00819 CbxX/CfqX superfamily signature 186 203 1.7E-61 T 11-11-2016 IPR000641 CbxX/CfqX GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 PRINTS PR00819 CbxX/CfqX superfamily signature 43 57 1.7E-61 T 11-11-2016 IPR000641 CbxX/CfqX GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 PRINTS PR00819 CbxX/CfqX superfamily signature 262 274 1.7E-61 T 11-11-2016 IPR000641 CbxX/CfqX GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 PRINTS PR00819 CbxX/CfqX superfamily signature 121 135 1.7E-61 T 11-11-2016 IPR000641 CbxX/CfqX GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 PRINTS PR00819 CbxX/CfqX superfamily signature 83 98 1.7E-61 T 11-11-2016 IPR000641 CbxX/CfqX GO:0005524 Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 Gene3D G3DSA:3.40.50.300 44 232 9.1E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27210 14aa5f9397d2d7fa7ab1f6f1de66c950 306 SMART SM00382 80 218 1.4E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS17315 8c5db7ddf988dd06107adfa91b6c68dc 72 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 17 72 4.5E-19 T 11-11-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 Gferi_RS17315 8c5db7ddf988dd06107adfa91b6c68dc 72 Gene3D G3DSA:1.20.5.1030 14 71 3.9E-21 T 11-11-2016 Gferi_RS17315 8c5db7ddf988dd06107adfa91b6c68dc 72 Hamap MF_00422 Protein translocase subunit SecE [secE]. 15 69 11.931 T 11-11-2016 IPR022943 Preprotein translocase subunit SecE Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS17315 8c5db7ddf988dd06107adfa91b6c68dc 72 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 18 70 9.4E-20 T 11-11-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Gferi_RS22070 8b379b6167b33241ad41ef71efcb1a42 120 SUPERFAMILY SSF53706 6 49 1.57E-6 T 11-11-2016 Gferi_RS22070 8b379b6167b33241ad41ef71efcb1a42 120 SUPERFAMILY SSF160148 46 118 5.1E-22 T 11-11-2016 IPR012460 Protein of unknown function DUF1667 Gferi_RS22070 8b379b6167b33241ad41ef71efcb1a42 120 Pfam PF07892 Protein of unknown function (DUF1667) 34 115 6.5E-30 T 11-11-2016 IPR012460 Protein of unknown function DUF1667 Gferi_RS22070 8b379b6167b33241ad41ef71efcb1a42 120 Gene3D G3DSA:3.10.530.10 46 115 6.2E-24 T 11-11-2016 IPR012460 Protein of unknown function DUF1667 Gferi_RS22070 8b379b6167b33241ad41ef71efcb1a42 120 Gene3D G3DSA:2.20.25.90 6 32 3.3E-6 T 11-11-2016 Gferi_RS10200 31292d984d600ef9463e5fefa1dee418 164 SMART SM00248 34 67 0.037 T 11-11-2016 IPR002110 Ankyrin repeat GO:0005515 Gferi_RS10200 31292d984d600ef9463e5fefa1dee418 164 SMART SM00248 72 101 24.0 T 11-11-2016 IPR002110 Ankyrin repeat GO:0005515 Gferi_RS10200 31292d984d600ef9463e5fefa1dee418 164 SMART SM00248 104 133 0.25 T 11-11-2016 IPR002110 Ankyrin repeat GO:0005515 Gferi_RS10200 31292d984d600ef9463e5fefa1dee418 164 Pfam PF12796 Ankyrin repeats (3 copies) 43 134 5.7E-16 T 11-11-2016 IPR020683 Ankyrin repeat-containing domain Gferi_RS10200 31292d984d600ef9463e5fefa1dee418 164 SUPERFAMILY SSF48403 12 163 8.86E-26 T 11-11-2016 IPR020683 Ankyrin repeat-containing domain Gferi_RS10200 31292d984d600ef9463e5fefa1dee418 164 Gene3D G3DSA:1.25.40.20 56 162 5.6E-22 T 11-11-2016 IPR020683 Ankyrin repeat-containing domain Gferi_RS10200 31292d984d600ef9463e5fefa1dee418 164 Gene3D G3DSA:1.25.40.20 12 55 9.4E-9 T 11-11-2016 IPR020683 Ankyrin repeat-containing domain Gferi_RS26340 00ea645292019bf3b66f9e47dec767f9 612 SUPERFAMILY SSF102114 223 594 1.22E-54 T 11-11-2016 Gferi_RS26340 00ea645292019bf3b66f9e47dec767f9 612 SMART SM00729 258 483 6.8E-34 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS26340 00ea645292019bf3b66f9e47dec767f9 612 Pfam PF04055 Radical SAM superfamily 262 426 3.4E-20 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS26340 00ea645292019bf3b66f9e47dec767f9 612 TIGRFAM TIGR03960 rSAM_fuse_unch: radical SAM family uncharacterized protein 7 612 3.5E-288 T 11-11-2016 IPR023862 Conserved hypothetical protein CHP03960, radical SAM Gferi_RS26340 00ea645292019bf3b66f9e47dec767f9 612 Gene3D G3DSA:3.80.30.20 257 493 7.1E-49 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS20155 a010b611a1334344f2a0bb919e786f89 68 Pfam PF07907 YibE/F-like protein 1 65 2.1E-22 T 11-11-2016 IPR012507 YibE/F-like Gferi_RS15750 13f771a898889a7b8f812ecb4ab44a6c 355 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 239 258 - T 11-11-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Gferi_RS15750 13f771a898889a7b8f812ecb4ab44a6c 355 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 2 347 2.0E-162 T 11-11-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Gferi_RS15750 13f771a898889a7b8f812ecb4ab44a6c 355 Gene3D G3DSA:3.40.718.10 2 353 2.2E-139 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS15750 13f771a898889a7b8f812ecb4ab44a6c 355 SMART SM01329 2 348 2.0E-210 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS15750 13f771a898889a7b8f812ecb4ab44a6c 355 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 1 352 51.99 T 11-11-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 Gferi_RS15750 13f771a898889a7b8f812ecb4ab44a6c 355 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 2 348 1.7E-144 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS15750 13f771a898889a7b8f812ecb4ab44a6c 355 SUPERFAMILY SSF53659 1 354 8.82E-128 T 11-11-2016 Gferi_RS07050 38db88151173da679ddbb7476ee4c3a3 205 Gene3D G3DSA:2.60.120.10 13 114 4.6E-20 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS07050 38db88151173da679ddbb7476ee4c3a3 205 Pfam PF05962 HutD 15 183 8.4E-28 T 11-11-2016 IPR010282 Uncharacterised protein family HutD/Ves Gferi_RS07050 38db88151173da679ddbb7476ee4c3a3 205 SUPERFAMILY SSF51182 5 179 3.18E-33 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS07050 38db88151173da679ddbb7476ee4c3a3 205 Gene3D G3DSA:2.60.120.10 140 174 7.6E-5 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS02675 9ca4e06d718a2a4f4d3dc7d1265b070d 184 SUPERFAMILY SSF48317 9 177 1.96E-39 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS02675 9ca4e06d718a2a4f4d3dc7d1265b070d 184 SMART SM00014 61 171 1.5E-21 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS02675 9ca4e06d718a2a4f4d3dc7d1265b070d 184 Gene3D G3DSA:1.20.144.10 11 174 1.4E-36 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS02675 9ca4e06d718a2a4f4d3dc7d1265b070d 184 Pfam PF01569 PAP2 superfamily 67 175 2.0E-22 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Gferi_RS16540 627b9bc5c33625b5525e2b0b8be96003 357 Gene3D G3DSA:3.20.20.70 6 341 2.9E-57 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS16540 627b9bc5c33625b5525e2b0b8be96003 357 SUPERFAMILY SSF51412 9 355 1.25E-55 T 11-11-2016 Gferi_RS16540 627b9bc5c33625b5525e2b0b8be96003 357 Pfam PF03060 Nitronate monooxygenase 7 353 1.3E-59 T 11-11-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Gferi_RS26765 ee44eed5dba84e88335bb93e3f98e232 454 Pfam PF13941 MutL protein 5 449 4.3E-168 T 11-11-2016 IPR006230 Protein MutL Gferi_RS26765 ee44eed5dba84e88335bb93e3f98e232 454 TIGRFAM TIGR01319 glmL_fam: conserved hypothetical protein 52 449 7.5E-85 T 11-11-2016 IPR006230 Protein MutL Gferi_RS26765 ee44eed5dba84e88335bb93e3f98e232 454 PIRSF PIRSF004729 2 451 9.0E-156 T 11-11-2016 IPR006230 Protein MutL Gferi_RS15760 00f6a32814455e57e4e87c5456fa53d6 187 Gene3D G3DSA:3.40.50.850 2 185 3.1E-51 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS15760 00f6a32814455e57e4e87c5456fa53d6 187 SUPERFAMILY SSF52499 3 185 4.45E-50 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS15760 00f6a32814455e57e4e87c5456fa53d6 187 Pfam PF00857 Isochorismatase family 8 181 4.1E-36 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS15325 4806f0f3cc385a3552e4b9ed611e500a 370 SMART SM00465 13 95 1.2E-19 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily Gferi_RS15325 4806f0f3cc385a3552e4b9ed611e500a 370 Gene3D G3DSA:4.10.860.10 179 230 4.6E-10 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS15325 4806f0f3cc385a3552e4b9ed611e500a 370 SUPERFAMILY SSF46600 185 237 1.96E-8 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS15325 4806f0f3cc385a3552e4b9ed611e500a 370 Gene3D G3DSA:3.40.1440.10 13 97 2.1E-10 T 11-11-2016 IPR027299 GIY-YIG domain Gferi_RS15325 4806f0f3cc385a3552e4b9ed611e500a 370 Pfam PF02151 UvrB/uvrC motif 200 229 4.6E-5 T 11-11-2016 IPR001943 UVR domain GO:0005515 Gferi_RS15325 4806f0f3cc385a3552e4b9ed611e500a 370 SUPERFAMILY SSF82771 13 96 2.48E-22 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily Gferi_RS15325 4806f0f3cc385a3552e4b9ed611e500a 370 Pfam PF01541 GIY-YIG catalytic domain 14 89 1.8E-8 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily Gferi_RS22845 4fd3d9670dbdeea26b27f3e419fd625b 150 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 8 144 2.3E-20 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 Gferi_RS08310 a5bee0bbb3975f8b8eca1f6e55fedb8d 502 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 442 1.2E-138 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 5.2E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 5.2E-6 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 SMART SM00345 16 74 1.0E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 Pfam PF07729 FCD domain 88 207 5.0E-20 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 SUPERFAMILY SSF48008 80 211 4.71E-20 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 SUPERFAMILY SSF46785 6 78 1.2E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 Gene3D G3DSA:1.20.120.530 78 217 7.7E-21 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 Gene3D G3DSA:1.10.10.10 6 75 3.2E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 74 3.5E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS15105 c64bde1173a1ff29625c1fcd8d50e8e5 233 SMART SM00895 84 208 1.2E-8 T 11-11-2016 IPR011711 GntR, C-terminal Gferi_RS18280 b1c1fa5831a00eafebcc1f19b465f667 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 163 191 - T 11-11-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Gferi_RS18280 b1c1fa5831a00eafebcc1f19b465f667 385 Gene3D G3DSA:3.40.50.1970 1 174 9.0E-55 T 11-11-2016 Gferi_RS18280 b1c1fa5831a00eafebcc1f19b465f667 385 Gene3D G3DSA:1.20.1090.10 175 383 1.7E-69 T 11-11-2016 Gferi_RS18280 b1c1fa5831a00eafebcc1f19b465f667 385 SUPERFAMILY SSF56796 3 383 3.93E-116 T 11-11-2016 Gferi_RS18280 b1c1fa5831a00eafebcc1f19b465f667 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 374 2.3E-112 T 11-11-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Gferi_RS26775 6abac4d3031d9629d692f96a30eeebef 91 Pfam PF11823 Protein of unknown function (DUF3343) 8 75 6.6E-11 T 11-11-2016 IPR021778 Protein of unknown function DUF3343 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 Pfam PF12833 Helix-turn-helix domain 260 337 3.9E-20 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 SUPERFAMILY SSF46689 238 287 8.51E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 305 320 4.4E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 320 336 4.4E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 SUPERFAMILY SSF52172 1 128 1.14E-32 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 SMART SM00448 2 116 1.9E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 SUPERFAMILY SSF46689 290 338 4.3E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 Gene3D G3DSA:3.40.50.2300 1 126 1.8E-33 T 11-11-2016 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 Gene3D G3DSA:1.10.10.60 235 289 6.6E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 Gene3D G3DSA:1.10.10.60 290 338 1.2E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 SMART SM00342 253 336 1.0E-29 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS18385 25efcb4c85cf3438457702dcddf0ddab 341 Pfam PF00072 Response regulator receiver domain 4 116 2.6E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 SUPERFAMILY SSF53187 95 369 1.84E-49 T 11-11-2016 Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 Gene3D G3DSA:3.40.630.10 508 559 6.6E-24 T 11-11-2016 Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 Gene3D G3DSA:3.40.630.10 591 796 6.6E-24 T 11-11-2016 Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 Pfam PF00395 S-layer homology domain 1422 1463 2.2E-13 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 Pfam PF00395 S-layer homology domain 1480 1521 2.3E-14 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 Pfam PF00395 S-layer homology domain 1539 1581 1.7E-11 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 Gene3D G3DSA:3.40.630.10 95 372 1.2E-56 T 11-11-2016 Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 Pfam PF04389 Peptidase family M28 154 360 4.6E-35 T 11-11-2016 IPR007484 Peptidase M28 Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 SUPERFAMILY SSF53187 509 558 5.32E-34 T 11-11-2016 Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 SUPERFAMILY SSF53187 590 793 5.32E-34 T 11-11-2016 Gferi_RS10895 0602c879dd95ccc4963b3bef6e56dc52 1590 Pfam PF00246 Zinc carboxypeptidase 538 682 2.2E-8 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS05055 a52f8d707727ddfe83b0d4d33533bce1 115 Pfam PF03551 Transcriptional regulator PadR-like family 16 89 2.0E-22 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS05055 a52f8d707727ddfe83b0d4d33533bce1 115 SUPERFAMILY SSF46785 4 102 3.97E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05055 a52f8d707727ddfe83b0d4d33533bce1 115 Gene3D G3DSA:1.10.10.10 3 110 5.0E-32 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11630 0838fbf0914350a2d10f2dd716bd5029 573 Gene3D G3DSA:3.30.565.10 434 561 1.7E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS11630 0838fbf0914350a2d10f2dd716bd5029 573 Pfam PF07730 Histidine kinase 362 425 2.6E-10 T 11-11-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Gferi_RS11630 0838fbf0914350a2d10f2dd716bd5029 573 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 471 562 1.2E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS11630 0838fbf0914350a2d10f2dd716bd5029 573 SMART SM00387 468 564 2.5E-7 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS11630 0838fbf0914350a2d10f2dd716bd5029 573 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 518 2.0E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS11630 0838fbf0914350a2d10f2dd716bd5029 573 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 542 2.0E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS11630 0838fbf0914350a2d10f2dd716bd5029 573 PRINTS PR00344 Bacterial sensor protein C-terminal signature 548 561 2.0E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS11630 0838fbf0914350a2d10f2dd716bd5029 573 SUPERFAMILY SSF55874 434 561 6.29E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS23265 8881e030d8c72852b35e794e5b91e4da 245 Gene3D G3DSA:3.80.30.10 72 244 6.0E-72 T 11-11-2016 Gferi_RS23265 8881e030d8c72852b35e794e5b91e4da 245 Pfam PF13353 4Fe-4S single cluster domain 18 140 4.5E-22 T 11-11-2016 Gferi_RS23265 8881e030d8c72852b35e794e5b91e4da 245 SUPERFAMILY SSF102114 25 223 9.55E-32 T 11-11-2016 Gferi_RS23265 8881e030d8c72852b35e794e5b91e4da 245 Pfam PF04055 Radical SAM superfamily 27 187 1.4E-29 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS23265 8881e030d8c72852b35e794e5b91e4da 245 ProSitePatterns PS01087 Radical activating enzymes signature. 20 41 - T 11-11-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 Gferi_RS23265 8881e030d8c72852b35e794e5b91e4da 245 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 8 239 7.0E-102 T 11-11-2016 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 Gferi_RS23265 8881e030d8c72852b35e794e5b91e4da 245 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 49 241 3.7E-53 T 11-11-2016 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 Gferi_RS19810 84dc8b9431b172efe851177fc9d1c6ad 211 SUPERFAMILY SSF52242 69 209 9.68E-36 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19810 84dc8b9431b172efe851177fc9d1c6ad 211 Gene3D G3DSA:1.10.1240.10 6 74 2.3E-16 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19810 84dc8b9431b172efe851177fc9d1c6ad 211 SUPERFAMILY SSF47644 5 81 9.15E-18 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19810 84dc8b9431b172efe851177fc9d1c6ad 211 Pfam PF02310 B12 binding domain 90 180 5.1E-19 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19810 84dc8b9431b172efe851177fc9d1c6ad 211 Gene3D G3DSA:3.40.50.280 75 209 4.2E-40 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19810 84dc8b9431b172efe851177fc9d1c6ad 211 Pfam PF02607 B12 binding domain 6 73 3.3E-15 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19810 84dc8b9431b172efe851177fc9d1c6ad 211 SMART SM01018 4 84 5.5E-19 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS05540 232ccb5dd75e718ba8fffde435b8eb56 234 SUPERFAMILY SSF103088 116 232 9.68E-31 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS05540 232ccb5dd75e718ba8fffde435b8eb56 234 Pfam PF00691 OmpA family 127 226 8.4E-20 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS05540 232ccb5dd75e718ba8fffde435b8eb56 234 Gene3D G3DSA:3.30.1330.60 108 232 6.2E-34 T 11-11-2016 IPR006665 OmpA-like domain Gferi_RS05540 232ccb5dd75e718ba8fffde435b8eb56 234 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 8 56 3.1E-11 T 11-11-2016 IPR025713 Motility protein B, N-terminal domain Gferi_RS23395 fde3efe6e5da67e375c86635d1562b16 175 Gene3D G3DSA:1.20.1260.10 13 167 2.0E-57 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS23395 fde3efe6e5da67e375c86635d1562b16 175 Pfam PF05067 Manganese containing catalase 14 169 2.0E-51 T 11-11-2016 IPR007760 Manganese catalase Gferi_RS23395 fde3efe6e5da67e375c86635d1562b16 175 SUPERFAMILY SSF47240 13 173 1.16E-57 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 5 427 42.711 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 Pfam PF00815 Histidinol dehydrogenase 22 427 5.1E-174 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PIRSF PIRSF000099 4 428 6.1E-172 T 11-11-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 229 261 - T 11-11-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 Gene3D G3DSA:3.40.50.1980 29 239 1.6E-79 T 11-11-2016 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 SUPERFAMILY SSF53720 29 426 4.71E-77 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 35 426 1.8E-167 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PRINTS PR00083 Histidinol dehydrogenase signature 320 345 5.4E-88 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PRINTS PR00083 Histidinol dehydrogenase signature 35 59 5.4E-88 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PRINTS PR00083 Histidinol dehydrogenase signature 170 196 5.4E-88 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PRINTS PR00083 Histidinol dehydrogenase signature 200 225 5.4E-88 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PRINTS PR00083 Histidinol dehydrogenase signature 229 250 5.4E-88 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PRINTS PR00083 Histidinol dehydrogenase signature 251 270 5.4E-88 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PRINTS PR00083 Histidinol dehydrogenase signature 361 379 5.4E-88 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS25830 0568a73ec6ca7ef59e21f6b39a88b783 429 PRINTS PR00083 Histidinol dehydrogenase signature 135 161 5.4E-88 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Gferi_RS01665 00a74c62486d150dcbcd6e5b09620b4b 211 SUPERFAMILY SSF63862 126 210 1.7E-10 T 11-11-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS01665 00a74c62486d150dcbcd6e5b09620b4b 211 SMART SM00983 146 205 1.0E-11 T 11-11-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS01665 00a74c62486d150dcbcd6e5b09620b4b 211 SUPERFAMILY SSF63999 1 128 1.96E-34 T 11-11-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS01665 00a74c62486d150dcbcd6e5b09620b4b 211 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 148 203 3.2E-14 T 11-11-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS01665 00a74c62486d150dcbcd6e5b09620b4b 211 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 23 125 1.7E-25 T 11-11-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS01665 00a74c62486d150dcbcd6e5b09620b4b 211 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 4 207 5.8E-56 T 11-11-2016 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS01665 00a74c62486d150dcbcd6e5b09620b4b 211 Gene3D G3DSA:3.40.50.10240 2 132 7.9E-33 T 11-11-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS01665 00a74c62486d150dcbcd6e5b09620b4b 211 Gene3D G3DSA:2.60.120.320 145 209 4.4E-11 T 11-11-2016 IPR007373 Thiamin pyrophosphokinase, vitamin B1-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS03045 1001a958032d8947d26b8ec16bc2ce56 340 Pfam PF07451 Stage V sporulation protein AD (SpoVAD) 7 334 1.8E-159 T 11-11-2016 IPR010894 Stage V sporulation AD Gferi_RS03045 1001a958032d8947d26b8ec16bc2ce56 340 PIRSF PIRSF011570 3 337 1.8E-155 T 11-11-2016 IPR010894 Stage V sporulation AD Gferi_RS03045 1001a958032d8947d26b8ec16bc2ce56 340 SUPERFAMILY SSF53901 58 319 8.35E-15 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS03045 1001a958032d8947d26b8ec16bc2ce56 340 TIGRFAM TIGR02845 spore_V_AD: stage V sporulation protein AD 8 334 1.8E-149 T 11-11-2016 IPR010894 Stage V sporulation AD Gferi_RS03045 1001a958032d8947d26b8ec16bc2ce56 340 Gene3D G3DSA:3.40.47.10 54 179 1.5E-6 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS19080 8b13df0bf35a42dffd14307a12b295b9 359 Pfam PF13786 Domain of unknown function (DUF4179) 49 139 2.0E-9 T 11-11-2016 IPR025436 Domain of unknown function DUF4179 Gferi_RS19080 8b13df0bf35a42dffd14307a12b295b9 359 Gene3D G3DSA:2.60.40.1630 90 232 1.4E-16 T 11-11-2016 Gferi_RS19655 5536a204a15c93558a1f1baad57fa111 280 SUPERFAMILY SSF56300 42 276 1.18E-39 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS19655 5536a204a15c93558a1f1baad57fa111 280 Gene3D G3DSA:3.60.21.10 44 230 1.0E-30 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS19655 5536a204a15c93558a1f1baad57fa111 280 Pfam PF00149 Calcineurin-like phosphoesterase 45 215 2.1E-18 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS17735 15ef16aaf5b014fa42bd4393a1263925 267 Gene3D G3DSA:3.20.20.20 2 260 9.1E-76 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17735 15ef16aaf5b014fa42bd4393a1263925 267 SUPERFAMILY SSF51717 2 260 3.27E-73 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS17735 15ef16aaf5b014fa42bd4393a1263925 267 Pfam PF00809 Pterin binding enzyme 7 227 1.9E-19 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS07195 b687b8c495e6e9607311bb822948e5b1 451 Pfam PF07287 Protein of unknown function (DUF1446) 6 363 8.7E-135 T 11-11-2016 IPR010839 Protein of unknown function DUF1446 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 Pfam PF00672 HAMP domain 283 351 3.8E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 Pfam PF02743 Cache domain 48 263 5.1E-35 T 11-11-2016 IPR033479 Double Cache domain 1 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 SUPERFAMILY SSF103190 83 186 2.2E-13 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 600 1.4E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 SUPERFAMILY SSF55874 489 601 2.88E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 SMART SM00387 494 603 1.2E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 SMART SM00304 303 355 9.6E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 SUPERFAMILY SSF158472 304 354 1.96E-9 T 11-11-2016 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 Gene3D G3DSA:3.30.565.10 437 601 6.2E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 SUPERFAMILY SSF47384 366 443 1.57E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 Gene3D G3DSA:3.30.450.20 143 280 3.7E-27 T 11-11-2016 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 563 581 2.0E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 587 600 2.0E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 545 2.0E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 549 559 2.0E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 Pfam PF00512 His Kinase A (phospho-acceptor) domain 384 441 2.3E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 SMART SM00388 381 448 6.3E-6 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS22415 2de541e65f6ecb79a5f45268de8a5a38 603 Gene3D G3DSA:1.10.287.130 375 436 7.7E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS00510 4699a49ffdefabb8ae4fc2e601d0b03d 322 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 73 230 3.8E-43 T 11-11-2016 IPR004474 Cell envelope-related transcriptional attenuator domain Gferi_RS00510 4699a49ffdefabb8ae4fc2e601d0b03d 322 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 72 230 1.4E-32 T 11-11-2016 IPR004474 Cell envelope-related transcriptional attenuator domain Gferi_RS08980 8a7658fcca9329df474c7b36406fbd01 182 Pfam PF13244 Domain of unknown function (DUF4040) 9 74 1.4E-21 T 11-11-2016 IPR025383 Domain of unknown function DUF4040 Gferi_RS14285 7b58f559869bc4c7429275f5998c1d6f 181 Gene3D G3DSA:1.10.10.10 118 179 8.2E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14285 7b58f559869bc4c7429275f5998c1d6f 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 178 5.0E-18 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14285 7b58f559869bc4c7429275f5998c1d6f 181 Gene3D G3DSA:1.10.1740.10 4 106 5.6E-18 T 11-11-2016 Gferi_RS14285 7b58f559869bc4c7429275f5998c1d6f 181 SUPERFAMILY SSF88946 5 104 1.73E-16 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14285 7b58f559869bc4c7429275f5998c1d6f 181 Pfam PF04542 Sigma-70 region 2 24 93 3.0E-11 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS14285 7b58f559869bc4c7429275f5998c1d6f 181 SUPERFAMILY SSF88659 111 179 5.61E-7 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10950 51afa6ea8ad352434aaac1bdca516cd2 358 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-11-2016 IPR019776 Flagellar basal body rod protein, conserved site Gferi_RS10950 51afa6ea8ad352434aaac1bdca516cd2 358 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 173 240 9.9E-22 T 11-11-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G Gferi_RS10950 51afa6ea8ad352434aaac1bdca516cd2 358 Pfam PF00460 Flagella basal body rod protein 5 35 1.8E-11 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Gferi_RS10950 51afa6ea8ad352434aaac1bdca516cd2 358 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 282 353 4.8E-22 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Gferi_RS10950 51afa6ea8ad352434aaac1bdca516cd2 358 SUPERFAMILY SSF117143 198 316 8.76E-24 T 11-11-2016 Gferi_RS25535 1afd82b9e8b751d983f6921b212a1b16 255 SUPERFAMILY SSF56601 2 254 6.66E-53 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS25535 1afd82b9e8b751d983f6921b212a1b16 255 Gene3D G3DSA:3.40.710.10 2 254 8.9E-63 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS25535 1afd82b9e8b751d983f6921b212a1b16 255 Pfam PF13354 Beta-lactamase enzyme family 30 228 5.0E-59 T 11-11-2016 Gferi_RS04915 7aa72126b297c40bbd292c9cf273f4fb 445 SUPERFAMILY SSF102114 81 401 1.31E-30 T 11-11-2016 Gferi_RS04915 7aa72126b297c40bbd292c9cf273f4fb 445 Pfam PF04055 Radical SAM superfamily 88 257 7.1E-7 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS04915 7aa72126b297c40bbd292c9cf273f4fb 445 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 334 405 3.7E-7 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS04915 7aa72126b297c40bbd292c9cf273f4fb 445 Gene3D G3DSA:3.20.20.70 81 403 3.5E-32 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS15895 eab5f5056c1994829ecacca32b8f63a9 250 Pfam PF01923 Cobalamin adenosyltransferase 87 242 1.5E-13 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS15895 eab5f5056c1994829ecacca32b8f63a9 250 Gene3D G3DSA:1.20.1200.10 87 241 4.4E-12 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS15895 eab5f5056c1994829ecacca32b8f63a9 250 SUPERFAMILY SSF89028 87 242 5.1E-9 T 11-11-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Gferi_RS15895 eab5f5056c1994829ecacca32b8f63a9 250 PIRSF PIRSF012294 1 250 2.6E-86 T 11-11-2016 IPR009194 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT-type GO:0005524|GO:0006580|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Gferi_RS21950 d42375a76f3c164af89f01221bd49a60 310 Pfam PF06675 Protein of unknown function (DUF1177) 39 309 6.3E-141 T 11-11-2016 IPR009561 Protein of unknown function DUF1177 Gferi_RS17020 5c406d636fc3104680a6c3a8fa724b48 312 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 201 268 9.1E-18 T 11-11-2016 Gferi_RS17020 5c406d636fc3104680a6c3a8fa724b48 312 SUPERFAMILY SSF55166 180 274 2.17E-16 T 11-11-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 Gferi_RS23300 6b6f2fcbe2228ed56d34fae2cb5787dd 85 Pfam PF12652 CotJB protein 7 82 3.8E-31 T 11-11-2016 IPR024207 Spore coat assembly protein CotJB, domain Gferi_RS23300 6b6f2fcbe2228ed56d34fae2cb5787dd 85 PIRSF PIRSF010606 1 83 9.9E-37 T 11-11-2016 IPR016571 Spore coat assembly protein CotJB Gferi_RS07045 e4f4e03f0d6bd447c51bf3252fc12433 232 Pfam PF13545 Crp-like helix-turn-helix domain 154 225 1.7E-8 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS07045 e4f4e03f0d6bd447c51bf3252fc12433 232 Pfam PF00027 Cyclic nucleotide-binding domain 35 116 2.2E-13 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS07045 e4f4e03f0d6bd447c51bf3252fc12433 232 Gene3D G3DSA:1.10.10.10 151 225 9.2E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07045 e4f4e03f0d6bd447c51bf3252fc12433 232 Gene3D G3DSA:2.60.120.10 26 143 1.0E-24 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS07045 e4f4e03f0d6bd447c51bf3252fc12433 232 SMART SM00100 15 136 1.4E-4 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS07045 e4f4e03f0d6bd447c51bf3252fc12433 232 SUPERFAMILY SSF51206 27 141 4.58E-23 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS07045 e4f4e03f0d6bd447c51bf3252fc12433 232 SUPERFAMILY SSF46785 151 227 4.36E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23235 4b3ca2b7527ae872d09f404b74a5575a 267 Pfam PF04607 Region found in RelA / SpoT proteins 45 166 5.8E-34 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 Gferi_RS23235 4b3ca2b7527ae872d09f404b74a5575a 267 Gene3D G3DSA:1.10.287.860 151 205 5.1E-23 T 11-11-2016 Gferi_RS23235 4b3ca2b7527ae872d09f404b74a5575a 267 Gene3D G3DSA:3.30.460.10 5 148 3.3E-36 T 11-11-2016 Gferi_RS23235 4b3ca2b7527ae872d09f404b74a5575a 267 SMART SM00954 45 168 1.4E-41 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 Gferi_RS23235 4b3ca2b7527ae872d09f404b74a5575a 267 SUPERFAMILY SSF81301 5 201 8.01E-55 T 11-11-2016 Gferi_RS04845 09c3667d3120d3b610e3a18f5df6760e 160 SUPERFAMILY SSF52499 2 142 4.45E-34 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS04845 09c3667d3120d3b610e3a18f5df6760e 160 Pfam PF00857 Isochorismatase family 4 140 1.9E-29 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS04845 09c3667d3120d3b610e3a18f5df6760e 160 Gene3D G3DSA:3.40.50.850 3 142 1.2E-31 T 11-11-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 Gferi_RS12260 9e32e4a386c385c825652465676539bc 519 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 45 505 4.3E-155 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS12260 9e32e4a386c385c825652465676539bc 519 PIRSF PIRSF005690 31 519 1.3E-153 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS24370 3c84d6c798c8b3ba610da2e7ca503870 284 Gene3D G3DSA:3.30.1180.10 152 279 3.3E-41 T 11-11-2016 Gferi_RS24370 3c84d6c798c8b3ba610da2e7ca503870 284 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 277 2.9E-92 T 11-11-2016 IPR003797 DegV Gferi_RS24370 3c84d6c798c8b3ba610da2e7ca503870 284 SUPERFAMILY SSF82549 2 279 1.18E-92 T 11-11-2016 Gferi_RS24370 3c84d6c798c8b3ba610da2e7ca503870 284 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 2 276 1.9E-100 T 11-11-2016 IPR003797 DegV Gferi_RS24370 3c84d6c798c8b3ba610da2e7ca503870 284 Gene3D G3DSA:3.40.50.10170 1 148 4.0E-53 T 11-11-2016 Gferi_RS01350 7a8f04a08a0c0bd438be4d4f82f8a192 532 SUPERFAMILY SSF52540 259 500 5.85E-20 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01350 7a8f04a08a0c0bd438be4d4f82f8a192 532 Gene3D G3DSA:3.40.50.300 258 498 9.1E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09770 3517304c3af6267ab10f8ea7c4c595e4 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 413 2.9E-92 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS09770 3517304c3af6267ab10f8ea7c4c595e4 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 419 3.4E-101 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS09770 3517304c3af6267ab10f8ea7c4c595e4 426 PIRSF PIRSF006066 1 425 4.7E-112 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS07220 c2f1022f81fd86a32f912e42e95a8a87 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 227 5.4E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07220 c2f1022f81fd86a32f912e42e95a8a87 229 SUPERFAMILY SSF46894 128 227 5.95E-30 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS07220 c2f1022f81fd86a32f912e42e95a8a87 229 Pfam PF00072 Response regulator receiver domain 4 113 3.7E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07220 c2f1022f81fd86a32f912e42e95a8a87 229 Gene3D G3DSA:1.10.10.10 128 228 2.1E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07220 c2f1022f81fd86a32f912e42e95a8a87 229 SMART SM00448 2 112 3.1E-40 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07220 c2f1022f81fd86a32f912e42e95a8a87 229 SUPERFAMILY SSF52172 1 122 5.55E-38 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS07220 c2f1022f81fd86a32f912e42e95a8a87 229 SMART SM00862 150 227 1.1E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07220 c2f1022f81fd86a32f912e42e95a8a87 229 Gene3D G3DSA:3.40.50.2300 2 123 1.1E-37 T 11-11-2016 Gferi_RS16020 c840837545fea6c859e28723b84375b0 82 Gene3D G3DSA:3.40.1620.10 7 48 9.1E-5 T 11-11-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Gferi_RS16020 c840837545fea6c859e28723b84375b0 82 SUPERFAMILY SSF143120 8 55 7.32E-9 T 11-11-2016 Gferi_RS16020 c840837545fea6c859e28723b84375b0 82 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 7 60 1.3E-8 T 11-11-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Gferi_RS01450 c840837545fea6c859e28723b84375b0 82 Gene3D G3DSA:3.40.1620.10 7 48 9.1E-5 T 11-11-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Gferi_RS01450 c840837545fea6c859e28723b84375b0 82 SUPERFAMILY SSF143120 8 55 7.32E-9 T 11-11-2016 Gferi_RS01450 c840837545fea6c859e28723b84375b0 82 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 7 60 1.3E-8 T 11-11-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Gferi_RS02940 395ae16e04f24b7640bfe7698e0ce956 170 PIRSF PIRSF018063 1 164 5.7E-56 T 11-11-2016 IPR014490 Uncharacterised conserved protein UCP018063, ferritin fold Gferi_RS02940 395ae16e04f24b7640bfe7698e0ce956 170 SUPERFAMILY SSF47240 10 160 8.33E-35 T 11-11-2016 IPR009078 Ferritin-like superfamily Gferi_RS02940 395ae16e04f24b7640bfe7698e0ce956 170 Pfam PF00210 Ferritin-like domain 17 160 2.5E-34 T 11-11-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Gferi_RS02940 395ae16e04f24b7640bfe7698e0ce956 170 Gene3D G3DSA:1.20.1260.10 8 161 1.2E-42 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS17130 34ed94d66eb22c41b1a962af61f07aa5 350 SUPERFAMILY SSF53686 5 348 9.82E-110 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS17130 34ed94d66eb22c41b1a962af61f07aa5 350 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 318 5.0E-77 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS17130 34ed94d66eb22c41b1a962af61f07aa5 350 Gene3D G3DSA:3.40.50.1100 145 329 6.3E-49 T 11-11-2016 Gferi_RS17130 34ed94d66eb22c41b1a962af61f07aa5 350 PIRSF PIRSF038945 1 349 6.8E-171 T 11-11-2016 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 Gferi_RS17130 34ed94d66eb22c41b1a962af61f07aa5 350 Gene3D G3DSA:3.40.50.1100 60 144 6.1E-44 T 11-11-2016 Gferi_RS17130 34ed94d66eb22c41b1a962af61f07aa5 350 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 52 65 - T 11-11-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Gferi_RS17130 34ed94d66eb22c41b1a962af61f07aa5 350 TIGRFAM TIGR00260 thrC: threonine synthase 7 325 1.9E-105 T 11-11-2016 IPR004450 Threonine synthase-like Gferi_RS12515 690cd748b623a74dbffb078d8ac7abd6 193 Gene3D G3DSA:3.40.50.150 11 186 8.7E-31 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS12515 690cd748b623a74dbffb078d8ac7abd6 193 Pfam PF13847 Methyltransferase domain 26 158 2.2E-23 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS12515 690cd748b623a74dbffb078d8ac7abd6 193 SUPERFAMILY SSF53335 13 173 1.11E-34 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS03265 6a213b4b8768f19acf533c402b6c9a41 221 Pfam PF11738 Protein of unknown function (DUF3298) 132 207 3.8E-11 T 11-11-2016 IPR021729 Domain of unknown function DUF3298 Gferi_RS03265 6a213b4b8768f19acf533c402b6c9a41 221 Pfam PF13739 Domain of unknown function (DUF4163) 21 110 6.0E-15 T 11-11-2016 IPR025303 Domain of unknown function DUF4163 Gferi_RS03265 6a213b4b8768f19acf533c402b6c9a41 221 Gene3D G3DSA:3.30.565.40 10 127 9.9E-18 T 11-11-2016 IPR025303 Domain of unknown function DUF4163 Gferi_RS03265 6a213b4b8768f19acf533c402b6c9a41 221 Gene3D G3DSA:3.90.640.20 132 219 2.6E-16 T 11-11-2016 IPR021729 Domain of unknown function DUF3298 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 126 149 - T 11-11-2016 IPR025505 FHIPEP conserved site Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 PIRSF PIRSF005419 1 675 4.1E-261 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 Pfam PF00771 FHIPEP family 15 665 6.1E-276 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 59 78 3.6E-55 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 121 137 3.6E-55 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 170 187 3.6E-55 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 22 35 3.6E-55 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 221 235 3.6E-55 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 140 158 3.6E-55 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 Gferi_RS00875 517e1e1f89faa6f9787324970b926e22 675 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 5 673 2.7E-268 T 11-11-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 Gferi_RS20000 ab39f453a04de2071fa4f9dad050b457 178 Pfam PF04545 Sigma-70, region 4 124 173 3.0E-8 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS20000 ab39f453a04de2071fa4f9dad050b457 178 SUPERFAMILY SSF88659 103 176 4.67E-10 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS20000 ab39f453a04de2071fa4f9dad050b457 178 Gene3D G3DSA:1.10.10.10 122 174 8.6E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25260 36f2cf17f3298eb79adaa8755a7f2d20 318 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 311 1.4E-51 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS20380 a0d65e815d8b5ab1a025d49ef9d140f3 271 Gene3D G3DSA:3.40.50.150 71 233 2.8E-43 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS20380 a0d65e815d8b5ab1a025d49ef9d140f3 271 Pfam PF13847 Methyltransferase domain 74 219 9.8E-30 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS20380 a0d65e815d8b5ab1a025d49ef9d140f3 271 SUPERFAMILY SSF53335 62 233 7.54E-41 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15315 575f29497c124e000e75235c7ddcd6a9 157 Gene3D G3DSA:1.10.8.10 1 53 1.9E-11 T 11-11-2016 Gferi_RS15315 575f29497c124e000e75235c7ddcd6a9 157 SUPERFAMILY SSF46934 1 52 1.53E-12 T 11-11-2016 IPR009060 UBA-like GO:0005515 Gferi_RS15315 575f29497c124e000e75235c7ddcd6a9 157 Pfam PF14242 Domain of unknown function (DUF4342) 46 120 6.6E-16 T 11-11-2016 IPR025642 Domain of unknown function DUF4342 Gferi_RS01585 a19178e601c6ff3a2c1ac5a824bbad4f 336 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 329 9.2E-119 T 11-11-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Gferi_RS01585 a19178e601c6ff3a2c1ac5a824bbad4f 336 Gene3D G3DSA:3.40.718.10 1 328 1.3E-134 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS01585 a19178e601c6ff3a2c1ac5a824bbad4f 336 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 334 146.77 T 11-11-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Gferi_RS01585 a19178e601c6ff3a2c1ac5a824bbad4f 336 PIRSF PIRSF002465 1 334 1.2E-128 T 11-11-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Gferi_RS01585 a19178e601c6ff3a2c1ac5a824bbad4f 336 Pfam PF02504 Fatty acid synthesis protein 1 320 3.4E-120 T 11-11-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 Gferi_RS01585 a19178e601c6ff3a2c1ac5a824bbad4f 336 SUPERFAMILY SSF53659 1 329 4.93E-102 T 11-11-2016 Gferi_RS24030 db13e59dedc21d9ae6c0a10cb0d157e8 171 Pfam PF01066 CDP-alcohol phosphatidyltransferase 7 70 3.2E-17 T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Gferi_RS24030 db13e59dedc21d9ae6c0a10cb0d157e8 171 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 48 70 - T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Gferi_RS24030 db13e59dedc21d9ae6c0a10cb0d157e8 171 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 12 163 1.3E-33 T 11-11-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 Gferi_RS03555 1bf98d4a838ac237e83f55848a40ace7 105 SUPERFAMILY SSF46785 11 102 6.08E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03555 1bf98d4a838ac237e83f55848a40ace7 105 Pfam PF03551 Transcriptional regulator PadR-like family 14 83 2.5E-8 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS03555 1bf98d4a838ac237e83f55848a40ace7 105 Gene3D G3DSA:1.10.10.10 4 101 1.5E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04995 72b71fb1e004bf6a4df1e864b343392c 351 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 119 341 2.2E-16 T 11-11-2016 IPR005079 Peptidase C45 Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 SUPERFAMILY SSF143414 95 180 6.02E-20 T 11-11-2016 Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 SMART SM00877 3 77 7.2E-24 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 SMART SM00877 95 173 1.1E-23 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 PIRSF PIRSF034834 1 182 1.1E-53 T 11-11-2016 IPR011238 Polyhedral organelle shell protein PduT Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 96 154 5.0E-11 T 11-11-2016 Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 5 60 7.0E-14 T 11-11-2016 Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 SUPERFAMILY SSF143414 3 92 2.75E-23 T 11-11-2016 Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 Pfam PF00936 BMC domain 96 173 3.2E-19 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS18365 26a5ceeacede2a15c91305a2c96bd14c 182 Pfam PF00936 BMC domain 4 76 1.4E-22 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 Pfam PF07702 UTRA domain 93 225 1.4E-20 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 SUPERFAMILY SSF64288 56 228 3.93E-25 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 Gene3D G3DSA:1.10.10.10 2 64 3.6E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 Gene3D G3DSA:3.40.1410.10 65 227 5.9E-29 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 SUPERFAMILY SSF46785 4 72 5.45E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 5.5E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 SMART SM00345 9 68 1.6E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 4.1E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 4.1E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS16405 e732acbcc21da0c1feba44047f9b5464 232 SMART SM00866 86 226 1.4E-14 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS10910 9396049f242c1b7900bba63d5c496d6c 300 SUPERFAMILY SSF103481 194 287 3.92E-15 T 11-11-2016 Gferi_RS10910 9396049f242c1b7900bba63d5c496d6c 300 SUPERFAMILY SSF103481 38 141 6.67E-16 T 11-11-2016 Gferi_RS10910 9396049f242c1b7900bba63d5c496d6c 300 Pfam PF00892 EamA-like transporter family 150 284 1.1E-23 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS10910 9396049f242c1b7900bba63d5c496d6c 300 Pfam PF00892 EamA-like transporter family 10 138 1.1E-15 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 Gene3D G3DSA:3.40.50.720 3 186 2.6E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 SUPERFAMILY SSF48179 188 345 8.5E-34 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 Gene3D G3DSA:1.10.1040.10 188 346 6.1E-37 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 PIRSF PIRSF000114 1 352 3.6E-62 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 188 339 3.5E-29 T 11-11-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3 168 1.1E-22 T 11-11-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 SUPERFAMILY SSF51735 3 186 2.84E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 58 85 2.1E-19 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 141 161 2.1E-19 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 181 205 2.1E-19 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 251 268 2.1E-19 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 6 23 2.1E-19 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS25600 dab5391ebc53dc8faa1ccd30e3b1a17e 353 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 211 235 2.1E-19 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 Gferi_RS24615 c3e26e2d2fc0d5032c85ea97ca9f3ec8 277 Gene3D G3DSA:1.10.3720.10 11 263 1.6E-52 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24615 c3e26e2d2fc0d5032c85ea97ca9f3ec8 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 269 4.3E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24615 c3e26e2d2fc0d5032c85ea97ca9f3ec8 277 SUPERFAMILY SSF161098 8 276 4.84E-59 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19520 3276b2eb42dbf1e396d53bb0d5cd080d 225 SMART SM00862 146 219 3.6E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS19520 3276b2eb42dbf1e396d53bb0d5cd080d 225 Pfam PF00072 Response regulator receiver domain 5 113 3.3E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS19520 3276b2eb42dbf1e396d53bb0d5cd080d 225 SUPERFAMILY SSF52172 2 167 2.42E-34 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS19520 3276b2eb42dbf1e396d53bb0d5cd080d 225 Gene3D G3DSA:3.40.50.2300 2 122 2.2E-31 T 11-11-2016 Gferi_RS19520 3276b2eb42dbf1e396d53bb0d5cd080d 225 Gene3D G3DSA:1.10.10.10 125 221 1.8E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19520 3276b2eb42dbf1e396d53bb0d5cd080d 225 SMART SM00448 2 113 1.4E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS19520 3276b2eb42dbf1e396d53bb0d5cd080d 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 218 4.3E-19 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS18300 c5dee4302b25d94424b18aaa720d2055 217 Pfam PF02288 Dehydratase medium subunit 61 174 3.7E-37 T 11-11-2016 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor Gferi_RS18300 c5dee4302b25d94424b18aaa720d2055 217 Gene3D G3DSA:3.40.50.10150 39 216 1.0E-83 T 11-11-2016 IPR010254 B12-dependent dehydratases, beta subunit Gferi_RS18300 c5dee4302b25d94424b18aaa720d2055 217 SUPERFAMILY SSF52968 39 216 7.72E-71 T 11-11-2016 IPR010254 B12-dependent dehydratases, beta subunit Gferi_RS18300 c5dee4302b25d94424b18aaa720d2055 217 PIRSF PIRSF018506 1 216 2.1E-99 T 11-11-2016 IPR025541 Propanediol/glycerol dehydratase, medium subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 Gferi_RS05685 6e8f6e947df97ec1461b23899e64464f 367 Gene3D G3DSA:3.40.50.2000 173 346 6.4E-21 T 11-11-2016 Gferi_RS05685 6e8f6e947df97ec1461b23899e64464f 367 SUPERFAMILY SSF53756 10 366 3.4E-38 T 11-11-2016 Gferi_RS05685 6e8f6e947df97ec1461b23899e64464f 367 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 14 181 8.0E-37 T 11-11-2016 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 Gferi_RS05685 6e8f6e947df97ec1461b23899e64464f 367 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 218 320 6.2E-8 T 11-11-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Gferi_RS05625 5dbfb16b9f76203b4d5db4d88ca3a3a7 281 Pfam PF00849 RNA pseudouridylate synthase 72 222 1.2E-31 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS05625 5dbfb16b9f76203b4d5db4d88ca3a3a7 281 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 115 129 - T 11-11-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS05625 5dbfb16b9f76203b4d5db4d88ca3a3a7 281 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 3 280 1.0E-80 T 11-11-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS05625 5dbfb16b9f76203b4d5db4d88ca3a3a7 281 SUPERFAMILY SSF55120 57 280 9.12E-73 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS08995 bffb11d53b065ecb6f339c7b81326f84 108 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 105 1.2E-20 T 11-11-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 SMART SM00562 1 138 4.3E-64 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 89 105 3.7E-39 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 4 26 3.7E-39 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 112 131 3.7E-39 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 68 85 3.7E-39 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 PRINTS PR01243 Nucleoside diphosphate kinase signature 48 67 3.7E-39 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 Gene3D G3DSA:3.30.70.141 1 134 8.9E-53 T 11-11-2016 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 Pfam PF00334 Nucleoside diphosphate kinase 2 133 2.0E-50 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 112 120 - T 11-11-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 1 140 31.206 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Gferi_RS18525 7c9822ca81bb6fd5498900aeeab4fcbc 144 SUPERFAMILY SSF54919 1 134 7.07E-52 T 11-11-2016 Gferi_RS18035 f5105ab4bb57be54ddda5eb935025a05 130 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 3 121 1.4E-40 T 11-11-2016 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain Gferi_RS18035 f5105ab4bb57be54ddda5eb935025a05 130 Pfam PF03610 PTS system fructose IIA component 3 117 6.6E-27 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS18035 f5105ab4bb57be54ddda5eb935025a05 130 Gene3D G3DSA:3.40.50.510 2 127 4.7E-44 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS18035 f5105ab4bb57be54ddda5eb935025a05 130 SUPERFAMILY SSF53062 2 123 2.75E-34 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS26270 210917b072cbe8b06a0f84f59eecef30 220 Pfam PF04002 RadC-like JAB domain 99 216 2.9E-46 T 11-11-2016 IPR025657 RadC-like JAB domain Gferi_RS26270 210917b072cbe8b06a0f84f59eecef30 220 SUPERFAMILY SSF47781 18 86 3.41E-5 T 11-11-2016 IPR010994 RuvA domain 2-like Gferi_RS26270 210917b072cbe8b06a0f84f59eecef30 220 Gene3D G3DSA:3.40.140.10 97 218 3.0E-48 T 11-11-2016 Gferi_RS26270 210917b072cbe8b06a0f84f59eecef30 220 Gene3D G3DSA:1.10.150.20 53 81 8.1E-4 T 11-11-2016 Gferi_RS26270 210917b072cbe8b06a0f84f59eecef30 220 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 169 174 - T 11-11-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site Gferi_RS26270 210917b072cbe8b06a0f84f59eecef30 220 TIGRFAM TIGR00608 radc: DNA repair protein RadC 6 218 5.2E-72 T 11-11-2016 IPR001405 RadC protein Gferi_RS00115 d4794621f3886b4f025c00de3c31e0fc 322 SUPERFAMILY SSF52343 168 301 3.45E-5 T 11-11-2016 Gferi_RS00115 d4794621f3886b4f025c00de3c31e0fc 322 Gene3D G3DSA:3.10.20.30 260 307 6.8E-4 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS00115 d4794621f3886b4f025c00de3c31e0fc 322 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 284 292 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 Gferi_RS00115 d4794621f3886b4f025c00de3c31e0fc 322 Gene3D G3DSA:2.40.30.10 67 148 2.0E-9 T 11-11-2016 Gferi_RS00115 d4794621f3886b4f025c00de3c31e0fc 322 SUPERFAMILY SSF63380 67 157 1.7E-9 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 Gferi_RS19865 dc33fc5a2daad21693b8b1ce29b6b40a 368 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 9 361 7.8E-68 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS19865 dc33fc5a2daad21693b8b1ce29b6b40a 368 Pfam PF03845 Spore germination protein 10 328 1.3E-66 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS11820 3bc6cc3c9cf499b666fb84196732df9a 189 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 44 186 2.1E-15 T 11-11-2016 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like Gferi_RS17815 5f5e0a5f4e74e6d460d337e7908b64f8 125 Pfam PF13650 Aspartyl protease 19 108 3.3E-11 T 11-11-2016 Gferi_RS17815 5f5e0a5f4e74e6d460d337e7908b64f8 125 SUPERFAMILY SSF50630 27 118 7.64E-7 T 11-11-2016 IPR021109 Aspartic peptidase domain Gferi_RS26695 8319719e9d19814924de73b5400032fc 494 TIGRFAM TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ 90 489 6.3E-164 T 11-11-2016 IPR023995 Coproporphyrinogen III oxidase Gferi_RS26695 8319719e9d19814924de73b5400032fc 494 Gene3D G3DSA:3.80.30.20 172 405 3.7E-39 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS26695 8319719e9d19814924de73b5400032fc 494 SMART SM00729 172 395 7.0E-46 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS26695 8319719e9d19814924de73b5400032fc 494 Pfam PF04055 Radical SAM superfamily 178 351 2.1E-20 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS26695 8319719e9d19814924de73b5400032fc 494 SUPERFAMILY SSF102114 169 482 7.46E-76 T 11-11-2016 Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 SUPERFAMILY SSF47005 116 161 1.44E-12 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 Pfam PF02817 e3 binding domain 121 156 3.4E-14 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 Gene3D G3DSA:2.40.50.100 2 94 8.0E-25 T 11-11-2016 Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 SUPERFAMILY SSF52777 213 435 7.12E-81 T 11-11-2016 Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 SUPERFAMILY SSF51230 1 88 1.15E-20 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 Gene3D G3DSA:4.10.320.10 164 206 1.7E-8 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 Pfam PF00364 Biotin-requiring enzyme 4 74 1.9E-14 T 11-11-2016 IPR000089 Biotin/lipoyl attachment Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 213 434 2.8E-83 T 11-11-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 Gene3D G3DSA:4.10.320.10 116 161 1.2E-18 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 Gferi_RS24905 371100d65f8962d495343cd3f4098fff 435 Gene3D G3DSA:3.30.559.10 208 434 3.9E-85 T 11-11-2016 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 SUPERFAMILY SSF53335 3 302 8.98E-66 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 35 302 7.7E-68 T 11-11-2016 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 Pfam PF17126 RsmF rRNA methyltransferase first C-terminal domain 328 389 7.0E-23 T 11-11-2016 IPR031340 Ribosomal RNA small subunit methyltransferase F, first C-terminal domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 78 92 4.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 224 240 4.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 174 186 4.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 285 302 4.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 107 117 4.1E-26 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 408 454 2.2E-20 T 11-11-2016 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 173 184 - T 11-11-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 Pfam PF01189 16S rRNA methyltransferase RsmB/F 97 301 1.3E-52 T 11-11-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 4 92 3.6E-34 T 11-11-2016 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 Gferi_RS23450 5598ccd28ce58c26b00b4d4c55a89874 454 Gene3D G3DSA:3.40.50.150 90 303 4.6E-61 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.120.10.80 128 387 8.5E-23 T 11-11-2016 IPR015915 Kelch-type beta propeller GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.10 672 761 1.1E-8 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SUPERFAMILY SSF50965 130 386 3.53E-23 T 11-11-2016 IPR011043 Galactose oxidase/kelch, beta-propeller Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.10 581 671 3.2E-5 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 1009 1078 3.3E-5 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 575 662 8.4 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 844 911 0.66 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 760 829 4.5E-7 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 1177 1246 9.4E-8 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 490 565 25.0 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 927 996 0.0017 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 1093 1162 0.0021 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SMART SM00060 676 745 0.0064 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SUPERFAMILY SSF49265 937 1090 1.69E-18 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SUPERFAMILY SSF49265 759 924 3.97E-17 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.680 1265 1365 3.7E-6 T 11-11-2016 IPR002102 Cellulosome anchoring protein, cohesin domain GO:0000272|GO:0030246 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.10 1103 1177 6.2E-10 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.10 846 926 1.6E-4 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.10 1012 1082 1.3E-8 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.10 936 1005 2.0E-8 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.10 762 839 5.0E-13 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 Gene3D G3DSA:2.60.40.10 1178 1256 1.9E-11 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SUPERFAMILY SSF49265 600 760 1.75E-16 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SUPERFAMILY SSF49384 1265 1364 2.88E-7 T 11-11-2016 IPR008965 Carbohydrate-binding domain GO:0030246 Gferi_RS10430 b95620fc5b38d43d0c72893e07680f12 1371 SUPERFAMILY SSF49265 1103 1257 2.49E-22 T 11-11-2016 IPR003961 Fibronectin type III GO:0005515 Gferi_RS23995 ee78ceaee28fb679c41d2dbe6d7fd805 120 SUPERFAMILY SSF46785 22 111 4.35E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23995 ee78ceaee28fb679c41d2dbe6d7fd805 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 69 8.9E-19 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23995 ee78ceaee28fb679c41d2dbe6d7fd805 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 8.9E-19 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23995 ee78ceaee28fb679c41d2dbe6d7fd805 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 71 86 8.9E-19 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23995 ee78ceaee28fb679c41d2dbe6d7fd805 120 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 86 101 8.9E-19 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23995 ee78ceaee28fb679c41d2dbe6d7fd805 120 SMART SM00418 37 115 4.3E-29 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23995 ee78ceaee28fb679c41d2dbe6d7fd805 120 Pfam PF01022 Bacterial regulatory protein, arsR family 44 90 4.2E-19 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23995 ee78ceaee28fb679c41d2dbe6d7fd805 120 Gene3D G3DSA:1.10.10.10 6 116 1.9E-39 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09335 a1ce475eca1fcbcf4a072a2aeb77809c 154 Pfam PF13581 Histidine kinase-like ATPase domain 27 145 1.4E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09335 a1ce475eca1fcbcf4a072a2aeb77809c 154 SUPERFAMILY SSF55874 53 150 6.02E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS09335 a1ce475eca1fcbcf4a072a2aeb77809c 154 Gene3D G3DSA:3.30.565.10 47 151 4.7E-10 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS24120 63724d4f21394d4075542260fbcf2b6a 161 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 152 2.3E-28 T 11-11-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Gferi_RS24120 63724d4f21394d4075542260fbcf2b6a 161 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 2 151 6.4E-31 T 11-11-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Gferi_RS24120 63724d4f21394d4075542260fbcf2b6a 161 SUPERFAMILY SSF56300 2 152 1.9E-32 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS24120 63724d4f21394d4075542260fbcf2b6a 161 Gene3D G3DSA:3.60.21.10 2 152 2.4E-31 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS21000 a525fb39e47803d184e589fd7805e5ac 165 Gene3D G3DSA:3.40.630.30 2 164 2.9E-47 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS21000 a525fb39e47803d184e589fd7805e5ac 165 SUPERFAMILY SSF55729 3 164 6.6E-41 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS21000 a525fb39e47803d184e589fd7805e5ac 165 Pfam PF13302 Acetyltransferase (GNAT) domain 11 140 3.1E-24 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS07475 c930aa170c064bc8f42e7ef42d44e8d7 469 Pfam PF00374 Nickel-dependent hydrogenase 39 117 4.9E-23 T 11-11-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Gferi_RS07475 c930aa170c064bc8f42e7ef42d44e8d7 469 Pfam PF00374 Nickel-dependent hydrogenase 329 455 2.3E-36 T 11-11-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Gferi_RS07475 c930aa170c064bc8f42e7ef42d44e8d7 469 Pfam PF00374 Nickel-dependent hydrogenase 129 321 5.6E-43 T 11-11-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Gferi_RS07475 c930aa170c064bc8f42e7ef42d44e8d7 469 Gene3D G3DSA:1.10.645.10 1 455 6.6E-146 T 11-11-2016 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS07475 c930aa170c064bc8f42e7ef42d44e8d7 469 SUPERFAMILY SSF56762 4 455 2.75E-122 T 11-11-2016 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS07475 c930aa170c064bc8f42e7ef42d44e8d7 469 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 446 455 - T 11-11-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Gferi_RS07475 c930aa170c064bc8f42e7ef42d44e8d7 469 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 11-11-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Gferi_RS25380 68587122083a2c5ffeba01f6a5d4507e 232 Pfam PF01471 Putative peptidoglycan binding domain 43 99 5.5E-14 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS25380 68587122083a2c5ffeba01f6a5d4507e 232 Gene3D G3DSA:1.10.101.10 31 107 1.5E-20 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS25380 68587122083a2c5ffeba01f6a5d4507e 232 SUPERFAMILY SSF47090 33 103 6.8E-19 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS25380 68587122083a2c5ffeba01f6a5d4507e 232 Pfam PF07486 Cell Wall Hydrolase 129 231 2.7E-26 T 11-11-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 Gferi_RS22280 39d814bc800daa4b3daab1894f36f5a1 605 SUPERFAMILY SSF90123 3 329 2.35E-55 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS22280 39d814bc800daa4b3daab1894f36f5a1 605 SUPERFAMILY SSF52540 334 585 5.33E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22280 39d814bc800daa4b3daab1894f36f5a1 605 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS22280 39d814bc800daa4b3daab1894f36f5a1 605 Pfam PF00005 ABC transporter 369 516 4.7E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22280 39d814bc800daa4b3daab1894f36f5a1 605 Gene3D G3DSA:1.20.1560.10 10 324 3.5E-46 T 11-11-2016 Gferi_RS22280 39d814bc800daa4b3daab1894f36f5a1 605 Gene3D G3DSA:3.40.50.300 342 575 1.3E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22280 39d814bc800daa4b3daab1894f36f5a1 605 SMART SM00382 376 562 4.6E-16 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS22280 39d814bc800daa4b3daab1894f36f5a1 605 Pfam PF00664 ABC transporter transmembrane region 21 297 1.5E-24 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS22505 02ad89f4be25b0c30b6f7824b4a88d7b 290 SUPERFAMILY SSF161098 80 265 3.14E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22505 02ad89f4be25b0c30b6f7824b4a88d7b 290 Gene3D G3DSA:1.10.3720.10 76 283 1.8E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS22505 02ad89f4be25b0c30b6f7824b4a88d7b 290 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 10 56 2.5E-12 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Gferi_RS22505 02ad89f4be25b0c30b6f7824b4a88d7b 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 103 286 7.0E-32 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 SUPERFAMILY SSF48310 261 624 4.32E-65 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 SUPERFAMILY SSF48310 667 701 4.32E-65 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 258 699 1.1E-105 T 11-11-2016 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 25 237 2.9E-49 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 SMART SM00790 22 240 9.9E-42 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 Gene3D G3DSA:3.60.9.10 20 240 1.3E-52 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 SUPERFAMILY SSF56228 21 240 1.83E-39 T 11-11-2016 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 Gene3D G3DSA:1.10.599.10 431 636 2.9E-51 T 11-11-2016 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 Gferi_RS16255 4217df66ad9706a20567b8c80392b127 714 Gene3D G3DSA:1.10.599.10 668 701 2.9E-51 T 11-11-2016 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 Gferi_RS22520 c31ec0514d7313b869499310fdbc194d 364 Gene3D G3DSA:3.90.230.10 139 362 3.3E-80 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS22520 c31ec0514d7313b869499310fdbc194d 364 Gene3D G3DSA:3.40.350.10 7 108 4.0E-13 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Gferi_RS22520 c31ec0514d7313b869499310fdbc194d 364 Pfam PF01321 Creatinase/Prolidase N-terminal domain 7 139 5.0E-11 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 Gferi_RS22520 c31ec0514d7313b869499310fdbc194d 364 SUPERFAMILY SSF55920 138 364 1.16E-75 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS22520 c31ec0514d7313b869499310fdbc194d 364 Pfam PF00557 Metallopeptidase family M24 147 347 5.4E-63 T 11-11-2016 IPR000994 Peptidase M24, structural domain Gferi_RS22520 c31ec0514d7313b869499310fdbc194d 364 SUPERFAMILY SSF53092 7 109 1.48E-13 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal Gferi_RS24825 e70a2c0b808fcef4509abccf6b87eccf 276 SMART SM00382 43 228 3.0E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS24825 e70a2c0b808fcef4509abccf6b87eccf 276 Gene3D G3DSA:3.40.50.300 6 237 6.5E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24825 e70a2c0b808fcef4509abccf6b87eccf 276 SUPERFAMILY SSF52540 8 237 3.34E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24825 e70a2c0b808fcef4509abccf6b87eccf 276 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS24825 e70a2c0b808fcef4509abccf6b87eccf 276 Pfam PF00005 ABC transporter 36 179 1.5E-17 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS17210 8317473d0e130d99a6a684bddd5558c8 266 SUPERFAMILY SSF56784 1 264 3.8E-70 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS17210 8317473d0e130d99a6a684bddd5558c8 266 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 259 2.5E-65 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS17210 8317473d0e130d99a6a684bddd5558c8 266 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 232 1.3E-32 T 11-11-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Gferi_RS17210 8317473d0e130d99a6a684bddd5558c8 266 Gene3D G3DSA:3.40.50.1000 1 72 3.8E-54 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS17210 8317473d0e130d99a6a684bddd5558c8 266 Gene3D G3DSA:3.40.50.1000 179 265 3.8E-54 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS17210 8317473d0e130d99a6a684bddd5558c8 266 Gene3D G3DSA:3.30.1240.10 84 178 1.4E-22 T 11-11-2016 Gferi_RS17210 8317473d0e130d99a6a684bddd5558c8 266 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 259 2.9E-58 T 11-11-2016 IPR000150 Cof protein GO:0016787 Gferi_RS24180 d0c46ade6292df8e9a52c4835f15fae4 175 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 83 162 3.0E-33 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS24180 d0c46ade6292df8e9a52c4835f15fae4 175 Gene3D G3DSA:1.10.10.10 82 169 9.0E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24180 d0c46ade6292df8e9a52c4835f15fae4 175 SUPERFAMILY SSF53155 4 88 3.53E-7 T 11-11-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS24180 d0c46ade6292df8e9a52c4835f15fae4 175 Gene3D G3DSA:3.30.160.70 2 69 1.8E-6 T 11-11-2016 Gferi_RS24180 d0c46ade6292df8e9a52c4835f15fae4 175 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 84 164 1.1E-30 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS24180 d0c46ade6292df8e9a52c4835f15fae4 175 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 133 139 - T 11-11-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS24180 d0c46ade6292df8e9a52c4835f15fae4 175 SUPERFAMILY SSF46767 82 165 1.83E-31 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Gferi_RS01440 268355f36e729b9c769be3ce69a75338 68 SMART SM00530 1 52 4.5E-9 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS01440 268355f36e729b9c769be3ce69a75338 68 Gene3D G3DSA:1.10.260.40 2 55 1.9E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01440 268355f36e729b9c769be3ce69a75338 68 SUPERFAMILY SSF47413 1 58 2.65E-14 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS01440 268355f36e729b9c769be3ce69a75338 68 Pfam PF01381 Helix-turn-helix 1 51 2.5E-14 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Gene3D G3DSA:3.30.65.10 570 612 2.1E-19 T 11-11-2016 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 607 2.1E-243 T 11-11-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Gene3D G3DSA:1.10.460.10 454 558 5.0E-61 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Gene3D G3DSA:1.10.460.10 135 182 5.0E-61 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Gene3D G3DSA:1.10.460.10 614 621 5.0E-61 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Gene3D G3DSA:3.40.50.140 2 134 5.0E-45 T 11-11-2016 IPR006171 Toprim domain Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 SMART SM00436 104 192 6.8E-51 T 11-11-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 629 54.784 T 11-11-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 SUPERFAMILY SSF57783 571 609 1.56E-13 T 11-11-2016 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 SMART SM00493 3 103 1.1E-31 T 11-11-2016 IPR006171 Toprim domain Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 SMART SM00437 244 507 3.4E-116 T 11-11-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Pfam PF01131 DNA topoisomerase 128 545 2.2E-131 T 11-11-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 SUPERFAMILY SSF56712 3 586 9.68E-196 T 11-11-2016 IPR023405 DNA topoisomerase, type IA, core domain Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 614 651 4.1E-13 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 653 688 9.6E-8 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 574 609 1.8E-15 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Gene3D G3DSA:2.70.20.10 322 453 8.8E-31 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Gene3D G3DSA:2.70.20.10 184 313 7.2E-32 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 SUPERFAMILY SSF57783 613 646 5.67E-5 T 11-11-2016 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 Pfam PF01751 Toprim domain 5 113 1.5E-29 T 11-11-2016 IPR006171 Toprim domain Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 162 180 6.0E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 295 304 6.0E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 6.0E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 372 388 6.0E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 470 484 6.0E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 Gferi_RS01020 3c253da502fa68f72210c84f3fa06415 691 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 281 304 - T 11-11-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 Gferi_RS01005 15b58572384fa5c2f4a42695a76f71ce 259 Hamap MF_00621 GTP-sensing transcriptional pleiotropic repressor CodY [codY]. 1 259 131.271 T 11-11-2016 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 Gferi_RS01005 15b58572384fa5c2f4a42695a76f71ce 259 Pfam PF06018 CodY GAF-like domain 4 179 7.5E-62 T 11-11-2016 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal GO:0003677|GO:0005525 Gferi_RS01005 15b58572384fa5c2f4a42695a76f71ce 259 SUPERFAMILY SSF46785 168 257 3.0E-42 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01005 15b58572384fa5c2f4a42695a76f71ce 259 TIGRFAM TIGR02787 codY_Gpos: GTP-sensing transcriptional pleiotropic repressor CodY 5 254 1.2E-109 T 11-11-2016 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 Gferi_RS01005 15b58572384fa5c2f4a42695a76f71ce 259 PIRSF PIRSF011572 2 258 9.8E-113 T 11-11-2016 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 Gferi_RS01005 15b58572384fa5c2f4a42695a76f71ce 259 Gene3D G3DSA:1.10.10.10 196 238 1.4E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01005 15b58572384fa5c2f4a42695a76f71ce 259 Pfam PF08222 CodY helix-turn-helix domain 198 258 6.6E-36 T 11-11-2016 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal Gferi_RS23025 dc5f344173cbe09aee15d340d5782941 220 Gene3D G3DSA:2.60.120.10 19 138 5.8E-21 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS23025 dc5f344173cbe09aee15d340d5782941 220 SUPERFAMILY SSF51206 25 138 1.44E-24 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS23025 dc5f344173cbe09aee15d340d5782941 220 SMART SM00100 14 132 4.4E-7 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS23025 dc5f344173cbe09aee15d340d5782941 220 Pfam PF00027 Cyclic nucleotide-binding domain 33 111 9.5E-14 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS23025 dc5f344173cbe09aee15d340d5782941 220 Gene3D G3DSA:1.10.10.10 170 218 2.0E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23025 dc5f344173cbe09aee15d340d5782941 220 SUPERFAMILY SSF46785 151 218 3.95E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 PIRSF PIRSF000161 1 251 4.4E-81 T 11-11-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 Gene3D G3DSA:3.40.50.720 2 119 2.2E-12 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 138 155 - T 11-11-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 116 249 3.7E-45 T 11-11-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 251 30.053 T 11-11-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 SUPERFAMILY SSF55347 115 222 1.74E-32 T 11-11-2016 Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 2 113 1.0E-28 T 11-11-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 2 250 2.6E-65 T 11-11-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 SUPERFAMILY SSF51735 222 250 2.54E-36 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 SUPERFAMILY SSF51735 2 114 2.54E-36 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04240 baf3fe579d8b92a21f95a82d382b88c3 251 Gene3D G3DSA:3.30.360.10 120 219 7.2E-37 T 11-11-2016 Gferi_RS08655 fc32ae03594600be5e1b1263a90cf687 118 SUPERFAMILY SSF47413 3 71 8.16E-19 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS08655 fc32ae03594600be5e1b1263a90cf687 118 Pfam PF01381 Helix-turn-helix 10 64 2.1E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS08655 fc32ae03594600be5e1b1263a90cf687 118 SMART SM00530 9 64 4.8E-15 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS08655 fc32ae03594600be5e1b1263a90cf687 118 Gene3D G3DSA:1.10.260.40 6 107 1.5E-21 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19150 2fd0b9ba9f9e934f00a3a896ebed9ac4 84 SMART SM00530 4 59 2.8E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS19150 2fd0b9ba9f9e934f00a3a896ebed9ac4 84 Pfam PF01381 Helix-turn-helix 5 57 2.1E-14 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS19150 2fd0b9ba9f9e934f00a3a896ebed9ac4 84 Gene3D G3DSA:1.10.260.40 1 64 4.4E-22 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS19150 2fd0b9ba9f9e934f00a3a896ebed9ac4 84 SUPERFAMILY SSF47413 2 66 3.66E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS10265 fca686b56345ee0b1ddb2345fbb3a301 311 Pfam PF14478 Domain of unknown function (DUF4430) 55 126 9.6E-14 T 11-11-2016 IPR027954 Domain of unknown function DUF4430 Reactome: R-HSA-196741 Gferi_RS18150 c7a16772e8f8538aabdf42af04c27eda 257 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 4 252 3.3E-59 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Gferi_RS18150 c7a16772e8f8538aabdf42af04c27eda 257 SUPERFAMILY SSF53067 1 254 3.67E-38 T 11-11-2016 Gferi_RS18150 c7a16772e8f8538aabdf42af04c27eda 257 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 4 250 1.2E-74 T 11-11-2016 IPR008275 CoA enzyme activase Gferi_RS18150 c7a16772e8f8538aabdf42af04c27eda 257 Gene3D G3DSA:3.30.420.40 95 233 1.3E-48 T 11-11-2016 Gferi_RS05375 9438d12365e7453a428fd04e90a81c5c 202 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 44 182 7.0E-17 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Gferi_RS05375 9438d12365e7453a428fd04e90a81c5c 202 Gene3D G3DSA:1.10.340.30 39 147 5.6E-32 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Gferi_RS05375 9438d12365e7453a428fd04e90a81c5c 202 Gene3D G3DSA:1.10.1670.10 148 198 1.4E-6 T 11-11-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Gferi_RS05375 9438d12365e7453a428fd04e90a81c5c 202 SMART SM00478 48 199 1.2E-12 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Gferi_RS05375 9438d12365e7453a428fd04e90a81c5c 202 SUPERFAMILY SSF48150 36 196 8.72E-41 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Gferi_RS01455 0e5d8c6c39cfd36520616dc32904f0af 170 Pfam PF06114 Domain of unknown function (DUF955) 20 136 6.0E-7 T 11-11-2016 IPR010359 HTH domain, IrrE-type Gferi_RS05515 ae7d1ce14b5f3f4f791a11fcb884de40 609 Gene3D G3DSA:3.40.50.300 361 591 3.8E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05515 ae7d1ce14b5f3f4f791a11fcb884de40 609 Pfam PF00664 ABC transporter transmembrane region 35 303 5.3E-37 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS05515 ae7d1ce14b5f3f4f791a11fcb884de40 609 Pfam PF00005 ABC transporter 377 526 4.9E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS05515 ae7d1ce14b5f3f4f791a11fcb884de40 609 Gene3D G3DSA:1.20.1560.10 18 332 1.5E-70 T 11-11-2016 Gferi_RS05515 ae7d1ce14b5f3f4f791a11fcb884de40 609 SUPERFAMILY SSF90123 19 332 1.96E-71 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS05515 ae7d1ce14b5f3f4f791a11fcb884de40 609 SMART SM00382 386 571 5.1E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05515 ae7d1ce14b5f3f4f791a11fcb884de40 609 SUPERFAMILY SSF52540 353 597 6.71E-90 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24185 bab41b486c142d0d8e1aedc2d7c357da 445 Pfam PF02450 Lecithin:cholesterol acyltransferase 53 157 2.2E-15 T 11-11-2016 IPR003386 Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase GO:0006629|GO:0008374 Gferi_RS24185 bab41b486c142d0d8e1aedc2d7c357da 445 SUPERFAMILY SSF53474 21 196 3.07E-19 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS24185 bab41b486c142d0d8e1aedc2d7c357da 445 Gene3D G3DSA:3.40.50.1820 221 230 2.8E-25 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS24185 bab41b486c142d0d8e1aedc2d7c357da 445 Gene3D G3DSA:3.40.50.1820 287 306 2.8E-25 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS24185 bab41b486c142d0d8e1aedc2d7c357da 445 Gene3D G3DSA:3.40.50.1820 23 154 2.8E-25 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS05950 e04be62c014f6637c346b6c514c6f624 206 Pfam PF08241 Methyltransferase domain 47 140 6.3E-21 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Gferi_RS05950 e04be62c014f6637c346b6c514c6f624 206 Gene3D G3DSA:3.40.50.150 3 196 7.2E-37 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS05950 e04be62c014f6637c346b6c514c6f624 206 SUPERFAMILY SSF53335 8 197 1.56E-35 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS06635 ad16a55788e6499c9af46fbd0c4ecabf 782 Pfam PF02687 FtsX-like permease family 656 777 1.3E-10 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS06635 ad16a55788e6499c9af46fbd0c4ecabf 782 Pfam PF02687 FtsX-like permease family 263 374 2.9E-9 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS12565 bfe77ed8773e62aa9eaa3b4e3eb99e79 223 Pfam PF02698 DUF218 domain 52 171 1.0E-25 T 11-11-2016 IPR003848 Domain of unknown function DUF218 Gferi_RS12565 bfe77ed8773e62aa9eaa3b4e3eb99e79 223 Gene3D G3DSA:3.40.50.620 48 175 4.9E-15 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SUPERFAMILY SSF48452 195 347 7.59E-20 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SMART SM00028 414 449 130.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SMART SM00028 233 266 0.035 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SMART SM00028 380 413 160.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SMART SM00028 543 576 140.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SMART SM00028 312 345 0.016 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SMART SM00028 267 300 200.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SMART SM00028 195 228 23.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 Gene3D G3DSA:1.25.40.10 528 572 7.9E-15 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 Gene3D G3DSA:1.25.40.10 192 354 3.1E-23 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 Gene3D G3DSA:1.25.40.10 381 479 7.9E-15 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 Pfam PF13174 Tetratricopeptide repeat 448 474 0.17 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 Pfam PF13181 Tetratricopeptide repeat 235 265 0.032 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 Pfam PF13181 Tetratricopeptide repeat 312 343 5.6E-4 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS06895 4f66a12a20c726e47803b2713ba6894e 592 SUPERFAMILY SSF48452 310 468 2.74E-13 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS10825 e7e53ab96799ef2cef2effe163b3455a 64 Pfam PF11148 Protein of unknown function (DUF2922) 1 63 4.3E-22 T 11-11-2016 IPR021321 Protein of unknown function DUF2922 Gferi_RS08180 0e2b0f0c972c88e5f53ab3af3ac66f69 173 Gene3D G3DSA:3.90.420.10 44 172 3.0E-4 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08180 0e2b0f0c972c88e5f53ab3af3ac66f69 173 Pfam PF00174 Oxidoreductase molybdopterin binding domain 78 172 3.0E-5 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS15605 73d59ace82964bd3e9b20fe5b96a57ae 318 SUPERFAMILY SSF46785 7 69 4.0E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15605 73d59ace82964bd3e9b20fe5b96a57ae 318 Gene3D G3DSA:1.10.10.10 8 46 8.7E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15605 73d59ace82964bd3e9b20fe5b96a57ae 318 Pfam PF08279 HTH domain 10 60 1.2E-9 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS15605 73d59ace82964bd3e9b20fe5b96a57ae 318 Pfam PF13280 WYL domain 145 314 3.0E-37 T 11-11-2016 IPR026881 WYL domain Gferi_RS20875 368314e1b3f37ed0c9aec4bd858367aa 491 Pfam PF02446 4-alpha-glucanotransferase 9 470 1.3E-172 T 11-11-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Gferi_RS20875 368314e1b3f37ed0c9aec4bd858367aa 491 SUPERFAMILY SSF51445 2 491 4.81E-177 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS20875 368314e1b3f37ed0c9aec4bd858367aa 491 Gene3D G3DSA:3.20.20.80 1 491 1.9E-187 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS20875 368314e1b3f37ed0c9aec4bd858367aa 491 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 2 491 3.7E-122 T 11-11-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Gferi_RS20110 2b7e5a46df98ad790cc5626ad6f05b02 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 111 5.3E-27 T 11-11-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 Gferi_RS20110 2b7e5a46df98ad790cc5626ad6f05b02 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 2 111 1.3E-26 T 11-11-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 Gferi_RS20110 2b7e5a46df98ad790cc5626ad6f05b02 113 PIRSF PIRSF004761 1 113 4.4E-29 T 11-11-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 Gferi_RS20110 2b7e5a46df98ad790cc5626ad6f05b02 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 11-11-2016 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site Gferi_RS00545 ed4f277e2b9681d985ea48608e80f5e9 65 Gene3D G3DSA:3.10.20.30 2 65 8.6E-18 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS00545 ed4f277e2b9681d985ea48608e80f5e9 65 SUPERFAMILY SSF54285 2 65 2.91E-14 T 11-11-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Gferi_RS00545 ed4f277e2b9681d985ea48608e80f5e9 65 Pfam PF02597 ThiS family 7 65 1.0E-10 T 11-11-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 Gferi_RS00545 ed4f277e2b9681d985ea48608e80f5e9 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 2 65 2.3E-15 T 11-11-2016 IPR010035 ThiS, thiamine-biosynthesis Gferi_RS13410 b4be720b08efa59638c96c1f1aabcd31 377 Gene3D G3DSA:3.30.70.260 295 342 4.1E-6 T 11-11-2016 Gferi_RS13410 b4be720b08efa59638c96c1f1aabcd31 377 SUPERFAMILY SSF48179 178 283 8.16E-29 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS13410 b4be720b08efa59638c96c1f1aabcd31 377 SUPERFAMILY SSF55021 294 346 3.21E-8 T 11-11-2016 Gferi_RS13410 b4be720b08efa59638c96c1f1aabcd31 377 SUPERFAMILY SSF51735 6 171 9.57E-46 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS13410 b4be720b08efa59638c96c1f1aabcd31 377 Pfam PF02153 Prephenate dehydrogenase 20 273 4.6E-70 T 11-11-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 Gferi_RS13410 b4be720b08efa59638c96c1f1aabcd31 377 Gene3D G3DSA:3.40.50.720 5 182 2.2E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00975 6fb5d39054ff79550704b3ee096905f1 250 Gene3D G3DSA:1.20.5.620 62 97 6.0E-4 T 11-11-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain Gferi_RS00975 6fb5d39054ff79550704b3ee096905f1 250 Pfam PF02108 Flagellar assembly protein FliH 117 238 1.9E-16 T 11-11-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE Gferi_RS05505 1d0158bebbf452fd012500895f0ffc23 385 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 209 374 4.4E-34 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS05505 1d0158bebbf452fd012500895f0ffc23 385 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 12 376 1.7E-85 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 SUPERFAMILY SSF53850 414 658 1.77E-45 T 11-11-2016 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 SMART SM00283 137 398 6.1E-37 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 210 396 7.2E-36 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 Gene3D G3DSA:3.40.190.10 412 494 8.6E-21 T 11-11-2016 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 Gene3D G3DSA:3.40.190.10 611 658 8.6E-21 T 11-11-2016 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 Gene3D G3DSA:3.40.190.100 497 610 2.3E-25 T 11-11-2016 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 414 656 8.8E-46 T 11-11-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 Gene3D G3DSA:1.10.287.950 155 370 7.1E-41 T 11-11-2016 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 SUPERFAMILY SSF58104 101 110 9.68E-50 T 11-11-2016 Gferi_RS15475 5c3207924e78ba070a9198ec6bcc5150 658 SUPERFAMILY SSF58104 143 411 9.68E-50 T 11-11-2016 Gferi_RS24610 2f0d98ed849319c9279855be45e76290 320 Gene3D G3DSA:1.10.3720.10 93 314 3.6E-45 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24610 2f0d98ed849319c9279855be45e76290 320 SUPERFAMILY SSF161098 75 305 1.7E-46 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24610 2f0d98ed849319c9279855be45e76290 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 314 3.9E-15 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 Gene3D G3DSA:1.10.150.170 113 217 2.3E-39 T 11-11-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 310 2.5E-117 T 11-11-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 Pfam PF01795 MraW methylase family 3 310 1.5E-124 T 11-11-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 SUPERFAMILY SSF81799 114 215 1.12E-35 T 11-11-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 Gene3D G3DSA:3.40.50.150 5 110 1.2E-50 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 Gene3D G3DSA:3.40.50.150 218 311 1.2E-50 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 311 39.157 T 11-11-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 SUPERFAMILY SSF53335 5 113 1.22E-42 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 SUPERFAMILY SSF53335 215 311 1.22E-42 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01990 9e925b69c233f431bace87ef5903577d 311 PIRSF PIRSF004486 1 311 2.8E-115 T 11-11-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS09010 674bc2a2385fe5c5edd297c5bc67b369 241 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 5 206 6.8E-54 T 11-11-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial Gferi_RS09010 674bc2a2385fe5c5edd297c5bc67b369 241 Gene3D G3DSA:3.40.50.1000 80 213 4.9E-34 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS09010 674bc2a2385fe5c5edd297c5bc67b369 241 Pfam PF12710 haloacid dehalogenase-like hydrolase 6 192 7.6E-16 T 11-11-2016 Gferi_RS09010 674bc2a2385fe5c5edd297c5bc67b369 241 SUPERFAMILY SSF56784 1 230 5.22E-28 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS09010 674bc2a2385fe5c5edd297c5bc67b369 241 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 195 3.8E-33 T 11-11-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 Gferi_RS17220 34cf79e92f494edc2d2a031b12c31b53 325 Pfam PF02779 Transketolase, pyrimidine binding domain 3 179 6.4E-55 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS17220 34cf79e92f494edc2d2a031b12c31b53 325 SMART SM00861 4 179 1.2E-70 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain Gferi_RS17220 34cf79e92f494edc2d2a031b12c31b53 325 SUPERFAMILY SSF52518 1 203 1.62E-74 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS17220 34cf79e92f494edc2d2a031b12c31b53 325 Pfam PF02780 Transketolase, C-terminal domain 193 316 2.5E-43 T 11-11-2016 IPR033248 Transketolase, C-terminal domain Gferi_RS17220 34cf79e92f494edc2d2a031b12c31b53 325 Gene3D G3DSA:3.40.50.970 1 193 8.4E-92 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS17220 34cf79e92f494edc2d2a031b12c31b53 325 Gene3D G3DSA:3.40.50.920 194 324 2.9E-49 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS17220 34cf79e92f494edc2d2a031b12c31b53 325 SUPERFAMILY SSF52922 189 324 6.02E-46 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 Gene3D G3DSA:3.20.20.140 57 329 9.6E-104 T 11-11-2016 Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 Pfam PF01979 Amidohydrolase family 51 375 1.5E-28 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 SUPERFAMILY SSF51338 347 378 6.68E-14 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 SUPERFAMILY SSF51338 3 54 6.68E-14 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 Gene3D G3DSA:2.30.40.10 4 56 5.9E-10 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 PIRSF PIRSF038994 2 379 2.8E-130 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 3 373 2.6E-112 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 SUPERFAMILY SSF51556 55 347 9.42E-99 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS12395 f4914a855d2c57571455e571f837f06a 379 Gene3D G3DSA:2.30.40.10 330 375 5.6E-5 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS18145 c49b1aefa0c78c70d6af3855b20d49d6 319 Pfam PF07859 alpha/beta hydrolase fold 65 295 8.4E-45 T 11-11-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 Gferi_RS18145 c49b1aefa0c78c70d6af3855b20d49d6 319 SUPERFAMILY SSF53474 34 317 3.47E-46 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS18145 c49b1aefa0c78c70d6af3855b20d49d6 319 Gene3D G3DSA:3.40.50.1820 33 312 4.9E-62 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS22315 aefe3cd4405f5b7176fdb15b3b058b89 221 SUPERFAMILY SSF89562 17 188 5.36E-37 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS22315 aefe3cd4405f5b7176fdb15b3b058b89 221 Pfam PF03737 Demethylmenaquinone methyltransferase 25 178 2.7E-30 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS22315 aefe3cd4405f5b7176fdb15b3b058b89 221 Gene3D G3DSA:3.50.30.40 17 187 1.7E-41 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS04690 610273ddedfea30f97d039fe1b883ae4 306 SUPERFAMILY SSF161111 9 210 2.48E-49 T 11-11-2016 Gferi_RS04690 610273ddedfea30f97d039fe1b883ae4 306 Gene3D G3DSA:3.30.70.1350 211 292 6.9E-21 T 11-11-2016 IPR027470 Cation efflux protein, cytoplasmic domain Gferi_RS04690 610273ddedfea30f97d039fe1b883ae4 306 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 13 291 7.7E-69 T 11-11-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Gferi_RS04690 610273ddedfea30f97d039fe1b883ae4 306 Pfam PF01545 Cation efflux family 17 209 4.4E-36 T 11-11-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Gferi_RS04690 610273ddedfea30f97d039fe1b883ae4 306 Pfam PF16916 Dimerisation domain of Zinc Transporter 214 291 6.2E-20 T 11-11-2016 IPR027470 Cation efflux protein, cytoplasmic domain Gferi_RS04690 610273ddedfea30f97d039fe1b883ae4 306 Gene3D G3DSA:1.20.1510.10 14 209 2.4E-43 T 11-11-2016 IPR027469 Cation efflux protein transmembrane domain Gferi_RS04690 610273ddedfea30f97d039fe1b883ae4 306 SUPERFAMILY SSF160240 212 292 7.85E-17 T 11-11-2016 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 141 161 2.5E-29 T 11-11-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 301 319 2.5E-29 T 11-11-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 440 455 2.5E-29 T 11-11-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 108 124 2.5E-29 T 11-11-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 346 362 2.5E-29 T 11-11-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 177 194 2.5E-29 T 11-11-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 Pfam PF02127 Aminopeptidase I zinc metalloprotease (M18) 43 473 3.6E-90 T 11-11-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 SUPERFAMILY SSF101821 120 250 2.47E-35 T 11-11-2016 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 Gene3D G3DSA:3.40.630.10 261 474 1.9E-83 T 11-11-2016 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 Gene3D G3DSA:3.40.630.10 35 118 1.9E-83 T 11-11-2016 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 Gene3D G3DSA:2.30.250.10 119 255 6.8E-47 T 11-11-2016 IPR023358 Peptidase M18, domain 2 GO:0004177 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 SUPERFAMILY SSF53187 252 474 1.51E-100 T 11-11-2016 Gferi_RS25985 6dba35d3995bc7ca9106e72c09f5880f 475 SUPERFAMILY SSF53187 21 119 1.51E-100 T 11-11-2016 Gferi_RS15550 bd76ee664dce1543f3a6b0fe45d2a6c4 395 SUPERFAMILY SSF53335 152 305 2.67E-15 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15550 bd76ee664dce1543f3a6b0fe45d2a6c4 395 Gene3D G3DSA:3.40.50.150 150 288 4.5E-12 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15550 bd76ee664dce1543f3a6b0fe45d2a6c4 395 Pfam PF13679 Methyltransferase domain 154 290 2.9E-36 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS24605 354b68956c9a4a331ce71c665e39c566 455 Gene3D G3DSA:3.40.190.10 183 367 8.1E-33 T 11-11-2016 Gferi_RS24605 354b68956c9a4a331ce71c665e39c566 455 Gene3D G3DSA:3.40.190.10 54 182 6.6E-15 T 11-11-2016 Gferi_RS24605 354b68956c9a4a331ce71c665e39c566 455 SUPERFAMILY SSF53850 22 446 5.98E-60 T 11-11-2016 Gferi_RS24605 354b68956c9a4a331ce71c665e39c566 455 Pfam PF01547 Bacterial extracellular solute-binding protein 55 360 8.2E-28 T 11-11-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 Gferi_RS19160 5ec27577e7bcb6cd65a89faf982ddb85 250 SUPERFAMILY SSF52540 29 217 3.29E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19160 5ec27577e7bcb6cd65a89faf982ddb85 250 Gene3D G3DSA:3.40.50.300 134 218 6.4E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19160 5ec27577e7bcb6cd65a89faf982ddb85 250 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 156 203 4.7E-7 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 Gferi_RS19160 5ec27577e7bcb6cd65a89faf982ddb85 250 Gene3D G3DSA:3.40.50.300 31 78 2.2E-11 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19160 5ec27577e7bcb6cd65a89faf982ddb85 250 SMART SM00382 39 215 2.7E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19160 5ec27577e7bcb6cd65a89faf982ddb85 250 Pfam PF13476 AAA domain 35 91 1.9E-10 T 11-11-2016 Gferi_RS20345 1232c72666d6ec26577e2da578db28d9 184 SUPERFAMILY SSF109604 4 161 8.95E-35 T 11-11-2016 Gferi_RS20345 1232c72666d6ec26577e2da578db28d9 184 Pfam PF13328 HD domain 8 128 7.7E-20 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS17170 a1cf8610a03ceb1f51edc84581f99dd7 230 Gene3D G3DSA:3.90.550.10 2 227 4.6E-75 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS17170 a1cf8610a03ceb1f51edc84581f99dd7 230 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3 224 8.9E-74 T 11-11-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Gferi_RS17170 a1cf8610a03ceb1f51edc84581f99dd7 230 SUPERFAMILY SSF53448 2 224 3.38E-61 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS17170 a1cf8610a03ceb1f51edc84581f99dd7 230 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4 224 1.5E-67 T 11-11-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Gferi_RS17170 a1cf8610a03ceb1f51edc84581f99dd7 230 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 1 227 30.837 T 11-11-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Gferi_RS17170 a1cf8610a03ceb1f51edc84581f99dd7 230 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 101 108 - T 11-11-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Gferi_RS06320 4531360f08753faec95871ad47926236 261 Pfam PF00809 Pterin binding enzyme 17 232 6.9E-34 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS06320 4531360f08753faec95871ad47926236 261 Gene3D G3DSA:3.20.20.20 4 260 2.8E-80 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS06320 4531360f08753faec95871ad47926236 261 SUPERFAMILY SSF51717 4 260 1.44E-71 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS18740 6001593a8b792371f2af626c3d8e2880 454 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 11 448 3.0E-139 T 11-11-2016 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 Gferi_RS18740 6001593a8b792371f2af626c3d8e2880 454 Gene3D G3DSA:3.40.50.1980 23 159 4.0E-48 T 11-11-2016 Gferi_RS18740 6001593a8b792371f2af626c3d8e2880 454 Gene3D G3DSA:3.40.50.1980 290 412 3.9E-51 T 11-11-2016 Gferi_RS18740 6001593a8b792371f2af626c3d8e2880 454 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 104 118 - T 11-11-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Gferi_RS18740 6001593a8b792371f2af626c3d8e2880 454 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 23 437 6.4E-126 T 11-11-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Gferi_RS18740 6001593a8b792371f2af626c3d8e2880 454 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 41 48 - T 11-11-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Gferi_RS18740 6001593a8b792371f2af626c3d8e2880 454 SUPERFAMILY SSF53807 3 453 9.81E-151 T 11-11-2016 Gferi_RS18740 6001593a8b792371f2af626c3d8e2880 454 Gene3D G3DSA:3.40.50.1980 165 265 5.3E-36 T 11-11-2016 Gferi_RS16910 aafcef2ea30ebacd6af563121e5846d5 387 PIRSF PIRSF015658 1 387 4.4E-175 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS16910 aafcef2ea30ebacd6af563121e5846d5 387 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 21 386 2.1E-165 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS16910 aafcef2ea30ebacd6af563121e5846d5 387 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 23 381 5.5E-153 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS08050 aafcef2ea30ebacd6af563121e5846d5 387 PIRSF PIRSF015658 1 387 4.4E-175 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS08050 aafcef2ea30ebacd6af563121e5846d5 387 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 21 386 2.1E-165 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS08050 aafcef2ea30ebacd6af563121e5846d5 387 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 23 381 5.5E-153 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS06510 ed19027f5f0926353b92d43143a34022 233 Gene3D G3DSA:3.40.50.300 1 219 1.8E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06510 ed19027f5f0926353b92d43143a34022 233 Pfam PF00005 ABC transporter 17 152 3.0E-23 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS06510 ed19027f5f0926353b92d43143a34022 233 SMART SM00382 26 202 3.4E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS06510 ed19027f5f0926353b92d43143a34022 233 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS06510 ed19027f5f0926353b92d43143a34022 233 SUPERFAMILY SSF52540 2 216 9.48E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23110 6d32a4dfcdf3681c4e63a85cda20656e 252 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 142 162 - T 11-11-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-936440 Gferi_RS23110 6d32a4dfcdf3681c4e63a85cda20656e 252 SUPERFAMILY SSF109998 3 143 9.81E-19 T 11-11-2016 IPR027304 Trigger factor/SurA domain Gferi_RS23110 6d32a4dfcdf3681c4e63a85cda20656e 252 Gene3D G3DSA:3.10.50.40 106 225 1.7E-47 T 11-11-2016 Gferi_RS23110 6d32a4dfcdf3681c4e63a85cda20656e 252 SUPERFAMILY SSF54534 106 202 1.31E-33 T 11-11-2016 Gferi_RS23110 6d32a4dfcdf3681c4e63a85cda20656e 252 Pfam PF13616 PPIC-type PPIASE domain 111 204 7.5E-25 T 11-11-2016 Gferi_RS23615 97dd47e428c83fb2bcd15f2d6418f3ac 143 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 10 107 2.3E-9 T 11-11-2016 IPR010064 Bacteriophage HK97-gp10, putative tail-component Gferi_RS23615 97dd47e428c83fb2bcd15f2d6418f3ac 143 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 10 136 1.5E-9 T 11-11-2016 IPR010064 Bacteriophage HK97-gp10, putative tail-component Gferi_RS24345 43b2cd2e30477e3846d8698134c7a2ed 310 Pfam PF04015 Domain of unknown function (DUF362) 43 245 1.7E-27 T 11-11-2016 IPR007160 Domain of unknown function DUF362 Gferi_RS20145 fa9f92ec49150593ead8075a7f25ab9b 334 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 4 334 5.7E-144 T 11-11-2016 IPR011854 Hydrogenase expression/formation protein HypE Gferi_RS20145 fa9f92ec49150593ead8075a7f25ab9b 334 SUPERFAMILY SSF55326 4 151 8.02E-35 T 11-11-2016 Gferi_RS20145 fa9f92ec49150593ead8075a7f25ab9b 334 Pfam PF00586 AIR synthase related protein, N-terminal domain 37 147 1.1E-18 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS20145 fa9f92ec49150593ead8075a7f25ab9b 334 Gene3D G3DSA:3.90.650.10 158 313 6.2E-26 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS20145 fa9f92ec49150593ead8075a7f25ab9b 334 PIRSF PIRSF005644 1 334 3.3E-128 T 11-11-2016 IPR011854 Hydrogenase expression/formation protein HypE Gferi_RS20145 fa9f92ec49150593ead8075a7f25ab9b 334 Gene3D G3DSA:3.30.1330.10 30 150 9.3E-24 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS20145 fa9f92ec49150593ead8075a7f25ab9b 334 Pfam PF02769 AIR synthase related protein, C-terminal domain 160 312 1.6E-27 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS20145 fa9f92ec49150593ead8075a7f25ab9b 334 SUPERFAMILY SSF56042 156 329 5.23E-45 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS07545 99aaabe141ac04cb5107b347058f7dd6 256 Gene3D G3DSA:3.40.50.1820 5 254 4.4E-33 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS07545 99aaabe141ac04cb5107b347058f7dd6 256 Pfam PF00561 alpha/beta hydrolase fold 22 181 3.8E-19 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS07545 99aaabe141ac04cb5107b347058f7dd6 256 SUPERFAMILY SSF53474 4 255 9.16E-34 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS25745 023c2760b7a2397b15e615a901341e57 286 Pfam PF04239 Protein of unknown function (DUF421) 89 204 2.1E-29 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS25745 023c2760b7a2397b15e615a901341e57 286 Gene3D G3DSA:3.30.240.20 79 152 1.1E-22 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS25745 023c2760b7a2397b15e615a901341e57 286 Pfam PF07870 Protein of unknown function (DUF1657) 237 284 7.0E-14 T 11-11-2016 IPR012452 Protein of unknown function DUF1657 Gferi_RS25745 023c2760b7a2397b15e615a901341e57 286 Gene3D G3DSA:3.30.240.20 169 227 7.7E-16 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS11945 7ca6ef1a049140494fa71b1c3878f051 342 Pfam PF13533 Biotin-lipoyl like 57 98 3.3E-8 T 11-11-2016 Gferi_RS11945 7ca6ef1a049140494fa71b1c3878f051 342 Gene3D G3DSA:2.40.50.100 50 85 1.3E-7 T 11-11-2016 Gferi_RS11945 7ca6ef1a049140494fa71b1c3878f051 342 Gene3D G3DSA:2.40.50.100 221 258 1.3E-7 T 11-11-2016 Gferi_RS11945 7ca6ef1a049140494fa71b1c3878f051 342 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 230 333 2.5E-9 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS11945 7ca6ef1a049140494fa71b1c3878f051 342 SUPERFAMILY SSF111369 42 148 4.71E-8 T 11-11-2016 Gferi_RS00465 b624c23a3494222a11de45cbc448aab7 424 SUPERFAMILY SSF56954 139 196 6.54E-8 T 11-11-2016 Gferi_RS00465 b624c23a3494222a11de45cbc448aab7 424 Gene3D G3DSA:1.20.1600.10 136 197 1.3E-8 T 11-11-2016 Gferi_RS00465 b624c23a3494222a11de45cbc448aab7 424 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 308 7.1E-15 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS00465 b624c23a3494222a11de45cbc448aab7 424 Gene3D G3DSA:2.40.50.100 66 101 2.7E-12 T 11-11-2016 Gferi_RS00465 b624c23a3494222a11de45cbc448aab7 424 Gene3D G3DSA:2.40.50.100 225 260 2.7E-12 T 11-11-2016 Gferi_RS15855 5dbd5e2f72327aeac799a37e570c8e0e 478 PIRSF PIRSF012293 1 477 2.9E-197 T 11-11-2016 IPR009377 Ethanolamine utilisation EutA Gferi_RS15855 5dbd5e2f72327aeac799a37e570c8e0e 478 Gene3D G3DSA:3.30.420.40 393 411 1.1E-7 T 11-11-2016 Gferi_RS15855 5dbd5e2f72327aeac799a37e570c8e0e 478 Gene3D G3DSA:3.30.420.40 147 177 1.1E-7 T 11-11-2016 Gferi_RS15855 5dbd5e2f72327aeac799a37e570c8e0e 478 Pfam PF06277 Ethanolamine utilisation protein EutA 4 476 7.8E-205 T 11-11-2016 IPR009377 Ethanolamine utilisation EutA Gferi_RS15855 5dbd5e2f72327aeac799a37e570c8e0e 478 SUPERFAMILY SSF53067 7 278 1.56E-11 T 11-11-2016 Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 34 258 2.7E-63 T 11-11-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 SMART SM00936 275 365 1.0E-11 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 Gene3D G3DSA:3.40.710.10 20 273 1.1E-87 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 275 365 4.7E-16 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 SUPERFAMILY SSF69189 267 363 1.33E-14 T 11-11-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 Gene3D G3DSA:2.60.410.10 278 365 7.8E-14 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 SUPERFAMILY SSF56601 11 275 2.39E-68 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 3.8E-14 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 68 79 3.8E-14 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS00120 39dd5294ef566f925982e7e35ef82126 380 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 3.8E-14 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS16560 f74173f145031281a53183c3e5ef90ef 416 SUPERFAMILY SSF53383 16 386 1.33E-56 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS16560 f74173f145031281a53183c3e5ef90ef 416 Pfam PF00155 Aminotransferase class I and II 39 398 4.0E-35 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS16560 f74173f145031281a53183c3e5ef90ef 416 Gene3D G3DSA:3.40.640.10 59 329 4.1E-57 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS19490 b7b3e637d8b005290550a318ac371051 193 Pfam PF10628 Outer spore coat protein E (CotE) 9 176 2.9E-21 T 11-11-2016 IPR018901 Spore coat protein CotE Gferi_RS15730 85280b281d6d0f0246bf2f1713eab812 175 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 156 3.2E-67 T 11-11-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Gferi_RS15730 85280b281d6d0f0246bf2f1713eab812 175 Pfam PF13710 ACT domain 12 73 4.7E-19 T 11-11-2016 Gferi_RS15730 85280b281d6d0f0246bf2f1713eab812 175 Gene3D G3DSA:3.30.70.1150 83 159 2.4E-32 T 11-11-2016 Gferi_RS15730 85280b281d6d0f0246bf2f1713eab812 175 Pfam PF10369 Small subunit of acetolactate synthase 83 156 3.8E-31 T 11-11-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 Gferi_RS15730 85280b281d6d0f0246bf2f1713eab812 175 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 73 2.0E-29 T 11-11-2016 Gferi_RS15730 85280b281d6d0f0246bf2f1713eab812 175 Gene3D G3DSA:3.30.70.260 1 78 3.6E-38 T 11-11-2016 Gferi_RS15730 85280b281d6d0f0246bf2f1713eab812 175 SUPERFAMILY SSF55021 78 159 4.48E-28 T 11-11-2016 Gferi_RS15730 85280b281d6d0f0246bf2f1713eab812 175 SUPERFAMILY SSF55021 1 76 1.22E-25 T 11-11-2016 Gferi_RS04870 d46cf3bab2210fcb1ebce80110b56d6a 242 SUPERFAMILY SSF54862 183 235 1.69E-7 T 11-11-2016 Gferi_RS04870 d46cf3bab2210fcb1ebce80110b56d6a 242 Pfam PF03773 Predicted permease 37 174 2.0E-13 T 11-11-2016 IPR005524 Predicted permease DUF318 Gferi_RS04870 d46cf3bab2210fcb1ebce80110b56d6a 242 Pfam PF06902 Divergent 4Fe-4S mono-cluster 178 237 5.1E-6 T 11-11-2016 IPR010693 Divergent 4Fe-4S mono-cluster Gferi_RS04870 d46cf3bab2210fcb1ebce80110b56d6a 242 Gene3D G3DSA:3.30.70.20 182 236 2.4E-8 T 11-11-2016 Gferi_RS22895 84ab22c20f689d7068d3122b33e8ea18 155 Pfam PF06445 GyrI-like small molecule binding domain 5 151 2.7E-20 T 11-11-2016 IPR029442 GyrI-like small molecule binding domain Gferi_RS22895 84ab22c20f689d7068d3122b33e8ea18 155 Gene3D G3DSA:3.20.80.10 4 151 5.5E-18 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS22895 84ab22c20f689d7068d3122b33e8ea18 155 SUPERFAMILY SSF55136 4 150 1.4E-23 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS22895 84ab22c20f689d7068d3122b33e8ea18 155 SMART SM00871 3 152 2.5E-23 T 11-11-2016 IPR010499 Bacterial transcription activator, effector binding Gferi_RS02055 bf22db6bcc48777f084466f97304fa41 101 TIGRFAM TIGR00106 TIGR00106: uncharacterized protein, MTH1187 family 2 99 1.0E-29 T 11-11-2016 IPR002767 Thiamine-binding protein Gferi_RS02055 bf22db6bcc48777f084466f97304fa41 101 Pfam PF01910 Thiamine-binding protein 4 95 4.5E-32 T 11-11-2016 IPR002767 Thiamine-binding protein Gferi_RS02055 bf22db6bcc48777f084466f97304fa41 101 Gene3D G3DSA:3.30.70.930 1 101 8.5E-33 T 11-11-2016 IPR029756 MTH1187/YkoF-like Gferi_RS02055 bf22db6bcc48777f084466f97304fa41 101 SUPERFAMILY SSF89957 1 100 1.96E-29 T 11-11-2016 IPR029756 MTH1187/YkoF-like Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 SUPERFAMILY SSF51556 76 375 6.81E-80 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 Gene3D G3DSA:3.20.20.140 85 360 2.6E-45 T 11-11-2016 Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 Hamap MF_00372 Imidazolonepropionase [hutI]. 5 414 43.117 T 11-11-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 TIGRFAM TIGR01224 hutI: imidazolonepropionase 35 412 3.7E-146 T 11-11-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 Pfam PF01979 Amidohydrolase family 74 414 1.8E-23 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 SUPERFAMILY SSF51338 34 77 2.02E-17 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 SUPERFAMILY SSF51338 374 416 2.02E-17 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 Gene3D G3DSA:2.30.40.10 361 410 5.6E-8 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS10440 ddaefb78e9f5c171b645b39fd28351a3 424 Gene3D G3DSA:2.30.40.10 6 84 5.7E-14 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS23050 83a9b8a364314e45dd8c39230a673265 449 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 449 220.245 T 11-11-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 Gferi_RS23050 83a9b8a364314e45dd8c39230a673265 449 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 103 402 5.4E-48 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS23050 83a9b8a364314e45dd8c39230a673265 449 SUPERFAMILY SSF53686 59 437 3.02E-54 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS23050 83a9b8a364314e45dd8c39230a673265 449 Gene3D G3DSA:3.40.50.1100 185 442 8.8E-38 T 11-11-2016 Gferi_RS23050 83a9b8a364314e45dd8c39230a673265 449 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 17 437 1.7E-191 T 11-11-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 Gferi_RS02900 a14455c805e7e28c1caa5dc79c6cc7f3 212 SMART SM00849 20 196 1.3E-22 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02900 a14455c805e7e28c1caa5dc79c6cc7f3 212 SUPERFAMILY SSF56281 21 204 1.9E-37 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02900 a14455c805e7e28c1caa5dc79c6cc7f3 212 Pfam PF00753 Metallo-beta-lactamase superfamily 22 196 2.1E-14 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02900 a14455c805e7e28c1caa5dc79c6cc7f3 212 Gene3D G3DSA:3.60.15.10 2 209 5.1E-36 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 308 1.2E-34 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 SUPERFAMILY SSF51905 1 317 1.43E-42 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 2.2E-25 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 242 258 2.2E-25 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 296 2.2E-25 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.2E-25 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 2.2E-25 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 Gene3D G3DSA:3.50.50.60 1 113 1.2E-26 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 289 296 5.0E-18 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 5.0E-18 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 243 257 5.0E-18 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 177 5.0E-18 T 11-11-2016 Gferi_RS25715 c86f991bdd1ad5df6cde42dccce32df0 366 Gene3D G3DSA:3.50.50.60 114 316 3.1E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 Gene3D G3DSA:1.20.20.10 8 82 9.0E-26 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 ProSitePatterns PS00605 ATP synthase c subunit signature. 44 65 - T 11-11-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 Pfam PF00137 ATP synthase subunit C 16 78 2.6E-18 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 24 81 6.6E-20 T 11-11-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 PRINTS PR00124 ATP synthase C subunit signature 37 52 2.6E-20 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 PRINTS PR00124 ATP synthase C subunit signature 16 35 2.6E-20 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 PRINTS PR00124 ATP synthase C subunit signature 54 79 2.6E-20 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 SUPERFAMILY SSF81333 9 83 3.4E-20 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Gferi_RS11040 f92888ac7a07792747666ff7d2a8e2c7 88 Hamap MF_01396 ATP synthase subunit c [atpH]. 14 81 17.182 T 11-11-2016 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 Gene3D G3DSA:1.25.60.10 3 118 1.7E-29 T 11-11-2016 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 Gene3D G3DSA:1.10.357.20 270 443 7.7E-55 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 SUPERFAMILY SSF161093 271 441 1.11E-48 T 11-11-2016 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 Pfam PF01769 Divalent cation transporter 313 436 1.7E-28 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 SMART SM00116 198 246 1.5E-6 T 11-11-2016 IPR000644 CBS domain Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 SUPERFAMILY SSF54631 127 262 1.57E-30 T 11-11-2016 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 Pfam PF00571 CBS domain 191 245 5.6E-8 T 11-11-2016 IPR000644 CBS domain Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 Pfam PF03448 MgtE intracellular N domain 25 125 1.2E-28 T 11-11-2016 IPR006668 Magnesium transporter, MgtE intracellular domain Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 TIGRFAM TIGR00400 mgtE: magnesium transporter 3 444 1.5E-155 T 11-11-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 SUPERFAMILY SSF158791 2 124 5.1E-30 T 11-11-2016 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 Gene3D G3DSA:3.10.580.10 119 255 9.4E-24 T 11-11-2016 Gferi_RS20395 8b50e2f3f2bc4cad9aaa0aba20b335ac 445 SMART SM00924 24 127 3.0E-33 T 11-11-2016 IPR006668 Magnesium transporter, MgtE intracellular domain Gferi_RS19235 94dbd7eb1fc729cfe5261edb6fc433b9 228 SUPERFAMILY SSF161098 6 214 2.88E-50 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19235 94dbd7eb1fc729cfe5261edb6fc433b9 228 Gene3D G3DSA:1.10.3720.10 6 212 2.1E-46 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS19235 94dbd7eb1fc729cfe5261edb6fc433b9 228 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 9 214 1.0E-73 T 11-11-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 Gferi_RS19235 94dbd7eb1fc729cfe5261edb6fc433b9 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 24 211 3.0E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS01725 a7f30a73503aacf367b52d2a5d187a96 67 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 58 1.5E-16 T 11-11-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS01725 a7f30a73503aacf367b52d2a5d187a96 67 Pfam PF01192 RNA polymerase Rpb6 8 60 3.8E-18 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Gferi_RS01725 a7f30a73503aacf367b52d2a5d187a96 67 SMART SM01409 8 60 6.1E-18 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Gferi_RS01725 a7f30a73503aacf367b52d2a5d187a96 67 Gene3D G3DSA:3.90.940.10 1 66 4.3E-22 T 11-11-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Gferi_RS01725 a7f30a73503aacf367b52d2a5d187a96 67 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 15.852 T 11-11-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Gferi_RS01725 a7f30a73503aacf367b52d2a5d187a96 67 SUPERFAMILY SSF63562 1 65 2.44E-24 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 Gferi_RS24715 ff6ffccd4c2bc60bb1b55cc26a40822d 254 Gene3D G3DSA:3.40.50.1820 2 254 1.1E-35 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS24715 ff6ffccd4c2bc60bb1b55cc26a40822d 254 Pfam PF00561 alpha/beta hydrolase fold 21 151 1.2E-13 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS24715 ff6ffccd4c2bc60bb1b55cc26a40822d 254 SUPERFAMILY SSF53474 1 253 2.34E-33 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS10885 19047b57afb455abf90ffa157d605363 158 SUPERFAMILY SSF53163 3 156 8.89E-42 T 11-11-2016 IPR023430 Peptidase HybD-like domain Gferi_RS10885 19047b57afb455abf90ffa157d605363 158 TIGRFAM TIGR02841 spore_YyaC: putative sporulation protein YyaC 14 150 6.8E-45 T 11-11-2016 IPR009665 Protein of unknown function DUF1256 Gferi_RS10885 19047b57afb455abf90ffa157d605363 158 Pfam PF06866 Protein of unknown function (DUF1256) 4 149 3.9E-56 T 11-11-2016 IPR009665 Protein of unknown function DUF1256 Gferi_RS18710 7542066e4cca879f09b1ed3a17c3973f 369 Pfam PF02073 Thermophilic metalloprotease (M29) 5 365 1.4E-98 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS18710 7542066e4cca879f09b1ed3a17c3973f 369 SUPERFAMILY SSF144052 3 366 1.31E-107 T 11-11-2016 Gferi_RS18710 7542066e4cca879f09b1ed3a17c3973f 369 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 278 298 8.7E-13 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS18710 7542066e4cca879f09b1ed3a17c3973f 369 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 13 30 8.7E-13 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS18710 7542066e4cca879f09b1ed3a17c3973f 369 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 222 241 8.7E-13 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS19305 75a02b0fb0f9e5f105d047caf939be72 153 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 7 89 2.3E-16 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Gferi_RS19305 75a02b0fb0f9e5f105d047caf939be72 153 Pfam PF00589 Phage integrase family 108 148 1.3E-6 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS19305 75a02b0fb0f9e5f105d047caf939be72 153 Gene3D G3DSA:1.10.150.130 16 88 6.0E-10 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal Gferi_RS19305 75a02b0fb0f9e5f105d047caf939be72 153 SUPERFAMILY SSF56349 5 148 1.82E-19 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Gferi_RS19305 75a02b0fb0f9e5f105d047caf939be72 153 Gene3D G3DSA:1.10.443.10 107 148 4.1E-6 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 Gferi_RS08545 def176b297579acb01dedc6932492e78 72 SMART SM00530 4 59 6.5E-16 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS08545 def176b297579acb01dedc6932492e78 72 Pfam PF01381 Helix-turn-helix 5 53 4.2E-17 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS08545 def176b297579acb01dedc6932492e78 72 SUPERFAMILY SSF47413 2 64 8.04E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS08545 def176b297579acb01dedc6932492e78 72 Gene3D G3DSA:1.10.260.40 2 64 3.9E-24 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 SUPERFAMILY SSF55874 326 489 2.1E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 Pfam PF00672 HAMP domain 196 264 1.1E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 SMART SM00388 269 336 1.1E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 SUPERFAMILY SSF47384 252 335 9.22E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 SMART SM00304 215 268 4.4E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 SMART SM00387 379 490 7.1E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 Gene3D G3DSA:1.10.287.130 259 322 2.4E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 380 489 7.0E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 Gene3D G3DSA:3.30.565.10 323 489 2.6E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 Pfam PF00512 His Kinase A (phospho-acceptor) domain 270 334 1.0E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 4.2E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 444 4.2E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 469 4.2E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 430 4.2E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS15305 71cbaea4c39cbbc99c97e86671414346 490 SUPERFAMILY SSF158472 215 266 1.44E-8 T 11-11-2016 Gferi_RS03000 64c5934421172f1946994feb174e8b6d 157 Pfam PF04284 Protein of unknown function (DUF441) 7 143 3.8E-37 T 11-11-2016 IPR007382 Uncharacterised protein family UPF0756, transmembrame Gferi_RS03000 64c5934421172f1946994feb174e8b6d 157 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 10 113 1.0E-8 T 11-11-2016 IPR007382 Uncharacterised protein family UPF0756, transmembrame Gferi_RS03000 64c5934421172f1946994feb174e8b6d 157 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 2 147 16.722 T 11-11-2016 IPR007382 Uncharacterised protein family UPF0756, transmembrame Gferi_RS07285 ad1e88a69e83b0b54da41d9541621462 429 Pfam PF12831 FAD dependent oxidoreductase 9 421 3.4E-77 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07285 ad1e88a69e83b0b54da41d9541621462 429 SUPERFAMILY SSF51905 351 404 1.89E-19 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07285 ad1e88a69e83b0b54da41d9541621462 429 SUPERFAMILY SSF51905 3 212 1.89E-19 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07285 ad1e88a69e83b0b54da41d9541621462 429 Gene3D G3DSA:3.50.50.60 349 403 7.0E-21 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07285 ad1e88a69e83b0b54da41d9541621462 429 Gene3D G3DSA:3.50.50.60 104 185 7.0E-21 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07285 ad1e88a69e83b0b54da41d9541621462 429 Gene3D G3DSA:3.50.50.60 8 58 7.0E-21 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06835 71d9cb918d53f59f95504fba7e353455 811 SMART SM01068 1 63 7.8E-19 T 11-11-2016 IPR009342 Putative carbohydrate binding domain Gferi_RS06835 71d9cb918d53f59f95504fba7e353455 811 Gene3D G3DSA:2.60.420.10 727 787 7.8E-11 T 11-11-2016 Gferi_RS06835 71d9cb918d53f59f95504fba7e353455 811 Pfam PF06165 Glycosyltransferase family 36 21 263 6.2E-79 T 11-11-2016 IPR010383 Glycosyl hydrolase 94 Gferi_RS06835 71d9cb918d53f59f95504fba7e353455 811 Gene3D G3DSA:2.70.98.40 1 336 1.3E-102 T 11-11-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Gferi_RS06835 71d9cb918d53f59f95504fba7e353455 811 SUPERFAMILY SSF74650 1 264 9.73E-81 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Gferi_RS06835 71d9cb918d53f59f95504fba7e353455 811 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 307 737 1.6E-177 T 11-11-2016 IPR033432 Glycosyl hydrolase 36, catalytic domain Gferi_RS06835 71d9cb918d53f59f95504fba7e353455 811 SUPERFAMILY SSF48208 284 811 5.88E-103 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 Gferi_RS06835 71d9cb918d53f59f95504fba7e353455 811 Gene3D G3DSA:1.50.10.10 377 566 2.0E-4 T 11-11-2016 IPR012341 Six-hairpin glycosidase GO:0003824 Gferi_RS21220 16b747a79337700babf9c8cc665bba30 111 Pfam PF01638 HxlR-like helix-turn-helix 18 106 1.5E-20 T 11-11-2016 IPR002577 Helix-turn-helix, HxlR type Gferi_RS21220 16b747a79337700babf9c8cc665bba30 111 SUPERFAMILY SSF46785 6 103 1.36E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21220 16b747a79337700babf9c8cc665bba30 111 Gene3D G3DSA:1.10.10.10 6 107 8.0E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11725 607518a5a83438008a16915e85f36268 484 Pfam PF07508 Recombinase 176 283 1.6E-26 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS11725 607518a5a83438008a16915e85f36268 484 SMART SM00857 3 149 1.5E-41 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS11725 607518a5a83438008a16915e85f36268 484 Gene3D G3DSA:3.40.50.1390 2 129 1.1E-26 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS11725 607518a5a83438008a16915e85f36268 484 Pfam PF13408 Recombinase zinc beta ribbon domain 296 351 5.8E-11 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS11725 607518a5a83438008a16915e85f36268 484 SUPERFAMILY SSF53041 2 149 1.96E-32 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS11725 607518a5a83438008a16915e85f36268 484 Pfam PF00239 Resolvase, N terminal domain 4 147 7.5E-31 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS17930 fb74fa3b26ccf2311771302b58ea71f1 209 Gene3D G3DSA:3.40.50.1110 4 199 1.7E-20 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain Gferi_RS17930 fb74fa3b26ccf2311771302b58ea71f1 209 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 5 190 1.4E-13 T 11-11-2016 IPR001087 GDSL lipase/esterase GO:0016788 Gferi_RS17930 fb74fa3b26ccf2311771302b58ea71f1 209 SUPERFAMILY SSF52266 2 198 3.48E-19 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain Gferi_RS16790 45d4d971acd60d1de94482d87bf54cd4 169 Pfam PF09578 Spore cortex protein YabQ (Spore_YabQ) 14 90 2.5E-20 T 11-11-2016 IPR019074 Spore cortex biosynthesis protein, YabQ-like Gferi_RS22645 fac4b6e41ccc9473b43b9eb644d94678 283 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 250 2.5E-45 T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Gferi_RS22645 fac4b6e41ccc9473b43b9eb644d94678 283 SUPERFAMILY SSF52518 4 254 1.04E-71 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS22645 fac4b6e41ccc9473b43b9eb644d94678 283 Gene3D G3DSA:3.40.50.970 3 258 6.4E-80 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS06305 244dcb973bb893ba64d7a12e86382e65 644 SUPERFAMILY SSF54292 1 88 1.08E-20 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS06305 244dcb973bb893ba64d7a12e86382e65 644 SUPERFAMILY SSF53067 360 404 2.99E-6 T 11-11-2016 Gferi_RS06305 244dcb973bb893ba64d7a12e86382e65 644 SUPERFAMILY SSF53067 450 562 2.99E-6 T 11-11-2016 Gferi_RS06305 244dcb973bb893ba64d7a12e86382e65 644 SUPERFAMILY SSF53067 271 313 2.99E-6 T 11-11-2016 Gferi_RS06305 244dcb973bb893ba64d7a12e86382e65 644 SUPERFAMILY SSF53067 215 243 2.99E-6 T 11-11-2016 Gferi_RS06305 244dcb973bb893ba64d7a12e86382e65 644 Gene3D G3DSA:3.10.20.30 1 88 1.9E-20 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS06305 244dcb973bb893ba64d7a12e86382e65 644 Pfam PF14574 Domain of unknown function (DUF4445) 213 624 4.1E-144 T 11-11-2016 IPR027980 Protein of unknown function DUF4445 Gferi_RS06305 244dcb973bb893ba64d7a12e86382e65 644 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 79 7.2E-11 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 Gene3D G3DSA:1.10.10.60 156 211 7.2E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 212 253 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 Pfam PF12833 Helix-turn-helix domain 183 258 5.3E-16 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 SUPERFAMILY SSF51215 19 121 1.83E-15 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 226 241 1.4E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 257 1.4E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 Gene3D G3DSA:2.60.120.280 17 100 3.8E-14 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 SUPERFAMILY SSF46689 213 259 1.57E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 SUPERFAMILY SSF46689 159 209 3.9E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 SMART SM00342 175 257 1.5E-20 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 Gene3D G3DSA:1.10.10.60 212 259 6.2E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14155 4795107b73dfdce5e21607e66693b3a0 262 Pfam PF02311 AraC-like ligand binding domain 24 131 1.3E-16 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 Gferi_RS18470 c63e74fbb5d16703e602620b945531dd 314 SMART SM00934 16 294 2.4E-28 T 11-11-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18470 c63e74fbb5d16703e602620b945531dd 314 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 2 280 6.9E-87 T 11-11-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686 Gferi_RS18470 c63e74fbb5d16703e602620b945531dd 314 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 16 277 1.6E-26 T 11-11-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 Gferi_RS18470 c63e74fbb5d16703e602620b945531dd 314 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 1 304 36.578 T 11-11-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686 Gferi_RS18470 c63e74fbb5d16703e602620b945531dd 314 Gene3D G3DSA:3.20.20.70 4 299 2.6E-65 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS18470 c63e74fbb5d16703e602620b945531dd 314 SUPERFAMILY SSF51366 1 277 5.89E-77 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Gferi_RS16380 688116916a54b99affe2d3c586047120 454 SUPERFAMILY SSF51726 13 388 4.53E-31 T 11-11-2016 Gferi_RS16380 688116916a54b99affe2d3c586047120 454 Gene3D G3DSA:3.20.20.210 179 388 3.8E-17 T 11-11-2016 Gferi_RS15675 501cfa93273f332c2934c35791a39f13 344 TIGRFAM TIGR00277 HDIG: HDIG domain 124 217 2.6E-7 T 11-11-2016 IPR006675 HDIG domain Gferi_RS15675 501cfa93273f332c2934c35791a39f13 344 SMART SM00471 121 258 4.1E-10 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS15675 501cfa93273f332c2934c35791a39f13 344 Pfam PF01966 HD domain 125 249 2.5E-19 T 11-11-2016 IPR006674 HD domain Gferi_RS15675 501cfa93273f332c2934c35791a39f13 344 Gene3D G3DSA:1.10.3210.10 110 249 2.1E-25 T 11-11-2016 IPR006674 HD domain Gferi_RS15675 501cfa93273f332c2934c35791a39f13 344 SUPERFAMILY SSF109604 104 280 1.41E-32 T 11-11-2016 Gferi_RS20600 b3c247db1d83a3f96d14ba53ee4f3404 375 Gene3D G3DSA:2.70.70.10 230 375 1.5E-53 T 11-11-2016 Gferi_RS20600 b3c247db1d83a3f96d14ba53ee4f3404 375 Pfam PF01551 Peptidase family M23 276 370 1.1E-35 T 11-11-2016 IPR016047 Peptidase M23 Gferi_RS20600 b3c247db1d83a3f96d14ba53ee4f3404 375 SUPERFAMILY SSF51261 185 373 1.31E-61 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS19325 4c903b71b1712e4fc555e6c72955fecf 174 TIGRFAM TIGR04518 ECF_S_folT_fam: ECF transporter S component, folate family 3 156 8.9E-44 T 11-11-2016 IPR030949 ECF transporter S component, folate family Gferi_RS19325 4c903b71b1712e4fc555e6c72955fecf 174 Pfam PF12822 Protein of unknown function (DUF3816) 5 155 2.0E-15 T 11-11-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 Gferi_RS07855 b81166a3f8fa85ef3264b286cb7d3337 347 Pfam PF01497 Periplasmic binding protein 66 311 1.2E-28 T 11-11-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 Gferi_RS07855 b81166a3f8fa85ef3264b286cb7d3337 347 Gene3D G3DSA:3.40.50.1980 174 333 5.1E-13 T 11-11-2016 Gferi_RS07855 b81166a3f8fa85ef3264b286cb7d3337 347 SUPERFAMILY SSF53807 61 337 1.02E-44 T 11-11-2016 Gferi_RS07855 b81166a3f8fa85ef3264b286cb7d3337 347 Gene3D G3DSA:3.40.50.1980 47 173 1.1E-20 T 11-11-2016 Gferi_RS21975 7ec37564290f0d59adcf7925c4aa7318 786 SUPERFAMILY SSF52009 676 783 1.44E-27 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS21975 7ec37564290f0d59adcf7925c4aa7318 786 Gene3D G3DSA:3.50.30.10 699 783 2.3E-28 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS21975 7ec37564290f0d59adcf7925c4aa7318 786 Gene3D G3DSA:3.30.1490.20 3 145 7.8E-27 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS21975 7ec37564290f0d59adcf7925c4aa7318 786 Pfam PF00391 PEP-utilising enzyme, mobile domain 709 780 3.2E-24 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS21975 7ec37564290f0d59adcf7925c4aa7318 786 Gene3D G3DSA:3.30.470.20 146 248 1.5E-26 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS21975 7ec37564290f0d59adcf7925c4aa7318 786 SUPERFAMILY SSF56059 1 252 1.29E-61 T 11-11-2016 Gferi_RS21975 7ec37564290f0d59adcf7925c4aa7318 786 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 207 251 1.3E-8 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS21975 7ec37564290f0d59adcf7925c4aa7318 786 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 48 195 5.4E-34 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS10315 0d33623e5fac858951d8ca44f4727dee 195 Gene3D G3DSA:1.10.10.10 116 174 2.1E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10315 0d33623e5fac858951d8ca44f4727dee 195 SUPERFAMILY SSF88659 110 172 1.25E-13 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10315 0d33623e5fac858951d8ca44f4727dee 195 Pfam PF08281 Sigma-70, region 4 117 169 1.8E-13 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10315 0d33623e5fac858951d8ca44f4727dee 195 Pfam PF04542 Sigma-70 region 2 21 79 1.1E-6 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10315 0d33623e5fac858951d8ca44f4727dee 195 SUPERFAMILY SSF88946 3 93 1.02E-16 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10315 0d33623e5fac858951d8ca44f4727dee 195 Gene3D G3DSA:1.10.1740.10 4 103 1.6E-19 T 11-11-2016 Gferi_RS10315 0d33623e5fac858951d8ca44f4727dee 195 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 173 4.5E-23 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS24685 47767dde7eeb8235db471a4cd7e1e83c 327 SUPERFAMILY SSF53474 48 322 4.81E-37 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS24685 47767dde7eeb8235db471a4cd7e1e83c 327 Pfam PF12146 Serine aminopeptidase, S33 91 237 8.9E-17 T 11-11-2016 IPR022742 Serine aminopeptidase, S33 Gferi_RS24685 47767dde7eeb8235db471a4cd7e1e83c 327 Gene3D G3DSA:3.40.50.1820 64 306 8.1E-34 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS07685 212fd264bf52c8c41fae9045fd41a456 341 SUPERFAMILY SSF53850 43 270 1.59E-31 T 11-11-2016 Gferi_RS07685 212fd264bf52c8c41fae9045fd41a456 341 Gene3D G3DSA:3.40.190.10 131 255 1.5E-16 T 11-11-2016 Gferi_RS07685 212fd264bf52c8c41fae9045fd41a456 341 Pfam PF09084 NMT1/THI5 like 55 268 2.2E-29 T 11-11-2016 IPR015168 SsuA/THI5-like Gferi_RS14375 31bb9af22b41de10bbb68d3f43ead181 293 SUPERFAMILY SSF51556 108 291 7.42E-25 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS14375 31bb9af22b41de10bbb68d3f43ead181 293 SUPERFAMILY SSF51556 7 70 7.42E-25 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS14375 31bb9af22b41de10bbb68d3f43ead181 293 Gene3D G3DSA:3.20.20.140 171 292 3.2E-11 T 11-11-2016 Gferi_RS27050 68c54a812d50cefe7816488349e28172 317 Gene3D G3DSA:3.40.50.300 22 185 9.6E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27050 68c54a812d50cefe7816488349e28172 317 SUPERFAMILY SSF52540 9 288 3.87E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS27050 68c54a812d50cefe7816488349e28172 317 Gene3D G3DSA:1.10.8.300 207 313 1.0E-36 T 11-11-2016 Gferi_RS27050 68c54a812d50cefe7816488349e28172 317 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 40 170 8.6E-62 T 11-11-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 Gferi_RS27050 68c54a812d50cefe7816488349e28172 317 PIRSF PIRSF002849 2 317 8.4E-129 T 11-11-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted Gferi_RS26515 e24ae0b1bde7ad1db577bb6d2f3db50f 88 Gene3D G3DSA:1.10.10.60 52 85 3.6E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS26515 e24ae0b1bde7ad1db577bb6d2f3db50f 88 SUPERFAMILY SSF46689 9 81 2.87E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS26515 e24ae0b1bde7ad1db577bb6d2f3db50f 88 Pfam PF08765 Mor transcription activator family 10 85 2.8E-11 T 11-11-2016 IPR014875 Mor transcription activator Gferi_RS14585 b3c26539924c726f91f79becf242b11e 142 Pfam PF10934 Protein of unknown function (DUF2634) 25 128 1.8E-34 T 11-11-2016 IPR020288 Protein of unknown function DUF2634 Gferi_RS14585 b3c26539924c726f91f79becf242b11e 142 Gene3D G3DSA:3.10.450.40 21 135 3.9E-7 T 11-11-2016 Gferi_RS14585 b3c26539924c726f91f79becf242b11e 142 SUPERFAMILY SSF160719 42 130 8.11E-6 T 11-11-2016 Gferi_RS14585 b3c26539924c726f91f79becf242b11e 142 ProDom PD033094 XKDS PHAGE-LIKE PBSX ELEMENT PHAGE LIN1286 RELATED YQBS 43 134 1.0E-17 T 11-11-2016 IPR020288 Protein of unknown function DUF2634 Gferi_RS08330 a4a3020583ceb8b46684dde5f3ae7861 354 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 34 334 6.1E-106 T 11-11-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 Gferi_RS08330 a4a3020583ceb8b46684dde5f3ae7861 354 Gene3D G3DSA:3.40.718.10 2 339 7.1E-130 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS08330 a4a3020583ceb8b46684dde5f3ae7861 354 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7 339 9.7E-102 T 11-11-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 Gferi_RS08330 a4a3020583ceb8b46684dde5f3ae7861 354 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 339 33.845 T 11-11-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 Gferi_RS08330 a4a3020583ceb8b46684dde5f3ae7861 354 SUPERFAMILY SSF53659 5 340 4.24E-101 T 11-11-2016 Gferi_RS12210 7ddf6bd7dde79ef757a6835c6169ead1 482 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 395 462 2.3E-10 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Gferi_RS12210 7ddf6bd7dde79ef757a6835c6169ead1 482 SUPERFAMILY SSF55904 339 481 1.57E-33 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Gferi_RS12210 7ddf6bd7dde79ef757a6835c6169ead1 482 Gene3D G3DSA:3.90.1150.10 316 375 1.4E-9 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS12210 7ddf6bd7dde79ef757a6835c6169ead1 482 SUPERFAMILY SSF53383 7 381 3.81E-89 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS12210 7ddf6bd7dde79ef757a6835c6169ead1 482 Gene3D G3DSA:3.90.100.10 376 480 6.2E-26 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 Gferi_RS12210 7ddf6bd7dde79ef757a6835c6169ead1 482 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 7 368 1.8E-79 T 11-11-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 Gferi_RS12210 7ddf6bd7dde79ef757a6835c6169ead1 482 Gene3D G3DSA:3.40.640.10 6 278 1.7E-105 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 Pfam PF00145 C-5 cytosine-specific DNA methylase 10 373 5.1E-47 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 12 372 3.0E-45 T 11-11-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 10 26 3.8E-14 T 11-11-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 132 146 3.8E-14 T 11-11-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 179 192 3.8E-14 T 11-11-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 Gene3D G3DSA:3.90.120.10 300 360 1.8E-7 T 11-11-2016 Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 SUPERFAMILY SSF53335 225 373 9.97E-63 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 SUPERFAMILY SSF53335 8 195 9.97E-63 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS21625 67ccb1b44f9b1419311f342796b6eca9 383 Gene3D G3DSA:3.40.50.150 6 211 2.6E-41 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS19335 92750d2483425ab2cffdb178e06e7ab7 211 SMART SM01018 1 86 2.2E-19 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19335 92750d2483425ab2cffdb178e06e7ab7 211 Pfam PF02607 B12 binding domain 6 79 5.1E-12 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19335 92750d2483425ab2cffdb178e06e7ab7 211 Pfam PF02310 B12 binding domain 92 195 3.0E-20 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19335 92750d2483425ab2cffdb178e06e7ab7 211 SUPERFAMILY SSF52242 74 210 2.09E-39 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19335 92750d2483425ab2cffdb178e06e7ab7 211 Gene3D G3DSA:1.10.1240.10 5 78 1.9E-10 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19335 92750d2483425ab2cffdb178e06e7ab7 211 SUPERFAMILY SSF47644 3 84 1.96E-17 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19335 92750d2483425ab2cffdb178e06e7ab7 211 Gene3D G3DSA:3.40.50.280 79 210 1.1E-43 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS12370 9100a5b1cedd50c960b6127ec89515af 344 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 4 256 3.5E-60 T 11-11-2016 IPR008275 CoA enzyme activase Gferi_RS12370 9100a5b1cedd50c960b6127ec89515af 344 SUPERFAMILY SSF53067 3 257 2.6E-45 T 11-11-2016 Gferi_RS12370 9100a5b1cedd50c960b6127ec89515af 344 Gene3D G3DSA:3.30.420.40 100 238 6.2E-50 T 11-11-2016 Gferi_RS12370 9100a5b1cedd50c960b6127ec89515af 344 Gene3D G3DSA:3.30.420.40 2 64 4.3E-5 T 11-11-2016 Gferi_RS12370 9100a5b1cedd50c960b6127ec89515af 344 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 257 1.6E-47 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Gferi_RS20165 a640ed6f60d2c0e12a9df2303904ea8c 272 SUPERFAMILY SSF52540 8 236 2.99E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20165 a640ed6f60d2c0e12a9df2303904ea8c 272 Gene3D G3DSA:3.40.50.300 6 251 2.4E-95 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20165 a640ed6f60d2c0e12a9df2303904ea8c 272 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 13 251 1.4E-96 T 11-11-2016 IPR019591 Mrp/NBP35 ATP-binding protein Gferi_RS20165 a640ed6f60d2c0e12a9df2303904ea8c 272 Hamap MF_02040 Iron-sulfur cluster carrier protein. 9 248 36.188 T 11-11-2016 IPR019591 Mrp/NBP35 ATP-binding protein Gferi_RS08660 63ce2bd002680a6270c48b249fbd5424 267 Gene3D G3DSA:1.10.10.10 11 81 3.3E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08660 63ce2bd002680a6270c48b249fbd5424 267 Pfam PF09339 IclR helix-turn-helix domain 14 63 3.6E-11 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS08660 63ce2bd002680a6270c48b249fbd5424 267 SUPERFAMILY SSF46785 11 81 7.62E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08660 63ce2bd002680a6270c48b249fbd5424 267 SMART SM00346 11 101 7.6E-17 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS08660 63ce2bd002680a6270c48b249fbd5424 267 Pfam PF01614 Bacterial transcriptional regulator 131 251 4.7E-31 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS08660 63ce2bd002680a6270c48b249fbd5424 267 SUPERFAMILY SSF55781 69 251 5.89E-40 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS08660 63ce2bd002680a6270c48b249fbd5424 267 Gene3D G3DSA:3.30.450.40 86 251 3.7E-43 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS11510 4cbb9290282f3eedc67da4c7bfa2be42 251 Pfam PF02310 B12 binding domain 111 236 3.7E-21 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS11510 4cbb9290282f3eedc67da4c7bfa2be42 251 Pfam PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase 10 87 2.8E-36 T 11-11-2016 IPR028991 D-lysine 5,6-aminomutase beta subunit KamE, N-terminal GO:0046983 Gferi_RS11510 4cbb9290282f3eedc67da4c7bfa2be42 251 Gene3D G3DSA:3.40.50.280 98 248 6.1E-48 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS11510 4cbb9290282f3eedc67da4c7bfa2be42 251 Gene3D G3DSA:3.30.30.60 22 73 1.9E-25 T 11-11-2016 IPR028991 D-lysine 5,6-aminomutase beta subunit KamE, N-terminal GO:0046983 Gferi_RS11510 4cbb9290282f3eedc67da4c7bfa2be42 251 SUPERFAMILY SSF52242 99 248 4.45E-42 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS11510 4cbb9290282f3eedc67da4c7bfa2be42 251 SUPERFAMILY SSF117778 22 73 3.4E-20 T 11-11-2016 IPR028991 D-lysine 5,6-aminomutase beta subunit KamE, N-terminal GO:0046983 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 SUPERFAMILY SSF144052 1 408 2.35E-146 T 11-11-2016 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 323 344 3.9E-63 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 78 97 3.9E-63 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 154 176 3.9E-63 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 362 384 3.9E-63 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 300 320 3.9E-63 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 388 407 3.9E-63 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 244 263 3.9E-63 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 13 30 3.9E-63 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14885 6abc7f63789bd91475e78c2424e7748d 409 Pfam PF02073 Thermophilic metalloprotease (M29) 4 407 6.9E-178 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS14845 b85344a35f59251db2d4e7449966d3fa 384 Gene3D G3DSA:1.20.1090.10 186 383 2.9E-75 T 11-11-2016 Gferi_RS14845 b85344a35f59251db2d4e7449966d3fa 384 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 11-11-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Gferi_RS14845 b85344a35f59251db2d4e7449966d3fa 384 Gene3D G3DSA:3.40.50.1970 6 185 1.7E-60 T 11-11-2016 Gferi_RS14845 b85344a35f59251db2d4e7449966d3fa 384 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 261 281 - T 11-11-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 Gferi_RS14845 b85344a35f59251db2d4e7449966d3fa 384 SUPERFAMILY SSF56796 7 382 1.7E-131 T 11-11-2016 Gferi_RS14845 b85344a35f59251db2d4e7449966d3fa 384 Pfam PF00465 Iron-containing alcohol dehydrogenase 13 376 2.9E-125 T 11-11-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Gferi_RS04945 3b87478d32904dbba3a2cffcf6aa0094 288 Pfam PF04439 Streptomycin adenylyltransferase 1 278 8.8E-107 T 11-11-2016 IPR007530 Aminoglycoside 6-adenylyltransferase Gferi_RS04945 3b87478d32904dbba3a2cffcf6aa0094 288 PIRSF PIRSF000812 1 282 1.3E-92 T 11-11-2016 IPR007530 Aminoglycoside 6-adenylyltransferase Gferi_RS04945 3b87478d32904dbba3a2cffcf6aa0094 288 SUPERFAMILY SSF81301 1 132 6.54E-43 T 11-11-2016 Gferi_RS04945 3b87478d32904dbba3a2cffcf6aa0094 288 Gene3D G3DSA:3.30.460.10 9 152 3.9E-50 T 11-11-2016 Gferi_RS04945 3b87478d32904dbba3a2cffcf6aa0094 288 SUPERFAMILY SSF81631 139 280 1.26E-49 T 11-11-2016 Gferi_RS04945 3b87478d32904dbba3a2cffcf6aa0094 288 Gene3D G3DSA:1.20.120.330 153 284 5.5E-42 T 11-11-2016 Gferi_RS17000 1ba862c813ec0fed206dad46e3781bbd 112 Gene3D G3DSA:3.30.1330.40 17 104 3.2E-21 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Gferi_RS17000 1ba862c813ec0fed206dad46e3781bbd 112 SUPERFAMILY SSF55298 16 106 4.56E-20 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Gferi_RS17000 1ba862c813ec0fed206dad46e3781bbd 112 Pfam PF01042 Endoribonuclease L-PSP 34 97 3.5E-11 T 11-11-2016 IPR006175 YjgF/YER057c/UK114 family Gferi_RS09780 9a52436baa89f1ca5a20d6e497093e74 236 SUPERFAMILY SSF46785 1 85 2.37E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS09780 9a52436baa89f1ca5a20d6e497093e74 236 SMART SM00345 14 73 6.4E-13 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS09780 9a52436baa89f1ca5a20d6e497093e74 236 SUPERFAMILY SSF64288 61 236 3.77E-42 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS09780 9a52436baa89f1ca5a20d6e497093e74 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 4.1E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS09780 9a52436baa89f1ca5a20d6e497093e74 236 Pfam PF07702 UTRA domain 96 233 5.7E-31 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS09780 9a52436baa89f1ca5a20d6e497093e74 236 Gene3D G3DSA:3.40.1410.10 71 236 1.1E-45 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS09780 9a52436baa89f1ca5a20d6e497093e74 236 SMART SM00866 94 233 6.5E-28 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS09780 9a52436baa89f1ca5a20d6e497093e74 236 Gene3D G3DSA:1.10.10.10 2 70 3.9E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18550 f2abdbc2ad4e865c65a5763f4b2d2870 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 294 9.9E-34 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS18550 f2abdbc2ad4e865c65a5763f4b2d2870 295 Gene3D G3DSA:1.10.3720.10 83 290 1.5E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS18550 f2abdbc2ad4e865c65a5763f4b2d2870 295 SUPERFAMILY SSF161098 87 277 5.63E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS26755 4fec5655b3d274bcb279af7dfb64467f 121 Gene3D G3DSA:3.20.20.440 20 99 6.3E-5 T 11-11-2016 IPR015130 D-Lysine 5,6-aminomutase alpha subunit Gferi_RS26755 4fec5655b3d274bcb279af7dfb64467f 121 Pfam PF16552 D-ornithine 4,5-aminomutase alpha-subunit 2 116 4.4E-59 T 11-11-2016 IPR015130 D-Lysine 5,6-aminomutase alpha subunit Gferi_RS26755 4fec5655b3d274bcb279af7dfb64467f 121 SUPERFAMILY SSF51703 17 115 1.26E-15 T 11-11-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS18855 9fc062c276249d6f1033e52436932a97 189 Pfam PF08006 Protein of unknown function (DUF1700) 1 188 2.2E-52 T 11-11-2016 IPR012963 Protein of unknown function DUF1700 Gferi_RS13495 43339c9ea8a5c722942c97bee09a51fd 306 SUPERFAMILY SSF51569 3 297 4.58E-71 T 11-11-2016 Gferi_RS13495 43339c9ea8a5c722942c97bee09a51fd 306 Pfam PF00682 HMGL-like 7 280 5.0E-52 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 Gferi_RS13495 43339c9ea8a5c722942c97bee09a51fd 306 Gene3D G3DSA:3.20.20.70 5 288 1.1E-75 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS04380 ff77fd0095ebfed253d08700759b50e2 301 SUPERFAMILY SSF46785 3 57 6.09E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04380 ff77fd0095ebfed253d08700759b50e2 301 Gene3D G3DSA:1.10.10.10 2 56 3.7E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04380 ff77fd0095ebfed253d08700759b50e2 301 PIRSF PIRSF016838 1 301 1.3E-24 T 11-11-2016 IPR028349 Protein PafC Gferi_RS04380 ff77fd0095ebfed253d08700759b50e2 301 Pfam PF13280 WYL domain 133 297 3.0E-28 T 11-11-2016 IPR026881 WYL domain Gferi_RS04380 ff77fd0095ebfed253d08700759b50e2 301 Pfam PF08279 HTH domain 5 54 5.9E-12 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS20035 5d55d6549a70216b4ec344708f22405a 292 SUPERFAMILY SSF161098 68 258 1.31E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20035 5d55d6549a70216b4ec344708f22405a 292 Gene3D G3DSA:1.10.3720.10 67 271 7.5E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20035 5d55d6549a70216b4ec344708f22405a 292 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 3 44 6.1E-9 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Gferi_RS20035 5d55d6549a70216b4ec344708f22405a 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 272 1.0E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS11470 a70ed1afdbf26b9d4f1410a65c7c87db 540 Hamap MF_01227 CTP synthase [pyrG]. 8 538 53.851 T 11-11-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Gferi_RS11470 a70ed1afdbf26b9d4f1410a65c7c87db 540 Gene3D G3DSA:3.40.50.880 295 539 1.2E-106 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS11470 a70ed1afdbf26b9d4f1410a65c7c87db 540 Gene3D G3DSA:3.40.50.300 4 289 3.8E-142 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11470 a70ed1afdbf26b9d4f1410a65c7c87db 540 SUPERFAMILY SSF52540 7 274 7.97E-128 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11470 a70ed1afdbf26b9d4f1410a65c7c87db 540 SUPERFAMILY SSF52317 296 539 6.88E-89 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS11470 a70ed1afdbf26b9d4f1410a65c7c87db 540 Pfam PF00117 Glutamine amidotransferase class-I 308 533 1.6E-60 T 11-11-2016 IPR017926 Glutamine amidotransferase Gferi_RS11470 a70ed1afdbf26b9d4f1410a65c7c87db 540 TIGRFAM TIGR00337 PyrG: CTP synthase 7 533 3.5E-263 T 11-11-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Gferi_RS11470 a70ed1afdbf26b9d4f1410a65c7c87db 540 Pfam PF06418 CTP synthase N-terminus 9 273 9.2E-133 T 11-11-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Gferi_RS26500 469a13e2b125a7a63b0987b36318ed3a 398 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 296 318 4.9E-21 T 11-11-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Gferi_RS26500 469a13e2b125a7a63b0987b36318ed3a 398 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 134 146 4.9E-21 T 11-11-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Gferi_RS26500 469a13e2b125a7a63b0987b36318ed3a 398 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 319 333 4.9E-21 T 11-11-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Gferi_RS26500 469a13e2b125a7a63b0987b36318ed3a 398 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 169 188 4.9E-21 T 11-11-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 Gferi_RS26500 469a13e2b125a7a63b0987b36318ed3a 398 SUPERFAMILY SSF53335 109 348 1.79E-50 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS26500 469a13e2b125a7a63b0987b36318ed3a 398 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 137 143 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS26500 469a13e2b125a7a63b0987b36318ed3a 398 Gene3D G3DSA:3.40.50.150 116 362 1.6E-47 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS26500 469a13e2b125a7a63b0987b36318ed3a 398 Pfam PF01555 DNA methylase 134 345 1.3E-36 T 11-11-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 Gferi_RS24835 408da05e8eb42efdaf053a2042b81070 291 Gene3D G3DSA:3.20.20.140 1 89 7.1E-43 T 11-11-2016 Gferi_RS24835 408da05e8eb42efdaf053a2042b81070 291 Gene3D G3DSA:3.20.20.140 174 275 7.1E-43 T 11-11-2016 Gferi_RS24835 408da05e8eb42efdaf053a2042b81070 291 SUPERFAMILY SSF89550 1 82 3.4E-47 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS24835 408da05e8eb42efdaf053a2042b81070 291 SUPERFAMILY SSF89550 182 289 3.4E-47 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS24835 408da05e8eb42efdaf053a2042b81070 291 Pfam PF02811 PHP domain 4 109 1.9E-10 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS24835 408da05e8eb42efdaf053a2042b81070 291 SMART SM00481 3 69 5.2E-16 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS06410 04b848a23b15aaf4e3619a3de884cec6 133 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 124 4.3E-21 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily Gferi_RS06410 04b848a23b15aaf4e3619a3de884cec6 133 SMART SM00226 3 127 1.7E-39 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily Gferi_RS06410 04b848a23b15aaf4e3619a3de884cec6 133 Gene3D G3DSA:3.40.50.270 1 126 9.1E-39 T 11-11-2016 Gferi_RS06410 04b848a23b15aaf4e3619a3de884cec6 133 SUPERFAMILY SSF52788 1 126 1.7E-36 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily Gferi_RS09310 bc417bc7639c431949ba116b446b48b4 351 Gene3D G3DSA:3.40.50.2300 148 315 1.2E-52 T 11-11-2016 Gferi_RS09310 bc417bc7639c431949ba116b446b48b4 351 Pfam PF02608 Basic membrane protein 45 350 2.1E-63 T 11-11-2016 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Gferi_RS09310 bc417bc7639c431949ba116b446b48b4 351 SUPERFAMILY SSF53822 55 262 3.03E-10 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS09845 dbcce53a6e017c4dd4806083505fbe33 580 SUPERFAMILY SSF90123 4 314 1.14E-47 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS09845 dbcce53a6e017c4dd4806083505fbe33 580 SUPERFAMILY SSF52540 326 566 2.37E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09845 dbcce53a6e017c4dd4806083505fbe33 580 Pfam PF00005 ABC transporter 348 496 3.8E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS09845 dbcce53a6e017c4dd4806083505fbe33 580 Pfam PF00664 ABC transporter transmembrane region 20 286 2.8E-23 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS09845 dbcce53a6e017c4dd4806083505fbe33 580 SMART SM00382 357 542 3.4E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS09845 dbcce53a6e017c4dd4806083505fbe33 580 Gene3D G3DSA:3.40.50.300 332 568 1.3E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09845 dbcce53a6e017c4dd4806083505fbe33 580 Gene3D G3DSA:1.20.1560.10 2 314 5.5E-40 T 11-11-2016 Gferi_RS18750 bb0a9f1930cd44e671d922c375d65630 453 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 17 435 1.4E-122 T 11-11-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 Gferi_RS18750 bb0a9f1930cd44e671d922c375d65630 453 SUPERFAMILY SSF53807 9 450 1.8E-133 T 11-11-2016 Gferi_RS18750 bb0a9f1930cd44e671d922c375d65630 453 Gene3D G3DSA:3.40.50.1980 159 259 8.4E-32 T 11-11-2016 Gferi_RS18750 bb0a9f1930cd44e671d922c375d65630 453 Gene3D G3DSA:3.40.50.1980 17 158 4.4E-49 T 11-11-2016 Gferi_RS18750 bb0a9f1930cd44e671d922c375d65630 453 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 35 42 - T 11-11-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 Gferi_RS18750 bb0a9f1930cd44e671d922c375d65630 453 Gene3D G3DSA:3.40.50.1980 289 411 3.9E-40 T 11-11-2016 Gferi_RS15220 69aa359ee53a473e7c2fa2ed248c5e6d 207 Gene3D G3DSA:3.90.640.20 117 200 3.6E-21 T 11-11-2016 IPR021729 Domain of unknown function DUF3298 Gferi_RS15220 69aa359ee53a473e7c2fa2ed248c5e6d 207 Pfam PF11738 Protein of unknown function (DUF3298) 117 186 1.0E-16 T 11-11-2016 IPR021729 Domain of unknown function DUF3298 Gferi_RS15220 69aa359ee53a473e7c2fa2ed248c5e6d 207 Gene3D G3DSA:3.30.565.40 21 113 4.8E-15 T 11-11-2016 IPR025303 Domain of unknown function DUF4163 Gferi_RS15220 69aa359ee53a473e7c2fa2ed248c5e6d 207 Pfam PF13739 Domain of unknown function (DUF4163) 22 98 2.6E-8 T 11-11-2016 IPR025303 Domain of unknown function DUF4163 Gferi_RS21370 57c2199622a86ee972616dafd771cee6 122 SUPERFAMILY SSF46785 6 120 3.44E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21370 57c2199622a86ee972616dafd771cee6 122 PIRSF PIRSF019455 1 122 9.0E-36 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS21370 57c2199622a86ee972616dafd771cee6 122 Pfam PF03965 Penicillinase repressor 8 120 1.0E-31 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS21370 57c2199622a86ee972616dafd771cee6 122 Gene3D G3DSA:1.10.10.10 5 82 4.4E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14445 816a7e3fa84c2d8fc36047453253f50b 237 Pfam PF03591 AzlC protein 20 157 7.4E-36 T 11-11-2016 IPR011606 Branched-chain amino acid transport, permease Gferi_RS20835 6343cb82903a39c4c06f0dcc13dc1695 146 Gene3D G3DSA:2.40.33.20 2 145 5.5E-29 T 11-11-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like Gferi_RS20835 6343cb82903a39c4c06f0dcc13dc1695 146 SUPERFAMILY SSF50800 2 145 9.42E-37 T 11-11-2016 IPR011037 Pyruvate kinase-like, insert domain Gferi_RS20970 5310d91ab3205f96561445c1eff46718 139 PIRSF PIRSF003230 1 138 5.0E-42 T 11-11-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Gferi_RS20970 5310d91ab3205f96561445c1eff46718 139 Pfam PF03061 Thioesterase superfamily 18 97 8.8E-15 T 11-11-2016 IPR006683 Thioesterase domain Reactome: R-HSA-75105 Gferi_RS20970 5310d91ab3205f96561445c1eff46718 139 Gene3D G3DSA:3.10.129.10 5 125 3.9E-45 T 11-11-2016 IPR029069 HotDog domain Gferi_RS20970 5310d91ab3205f96561445c1eff46718 139 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 9 26 - T 11-11-2016 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 Gferi_RS20970 5310d91ab3205f96561445c1eff46718 139 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 122 2.6E-31 T 11-11-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Gferi_RS20970 5310d91ab3205f96561445c1eff46718 139 SUPERFAMILY SSF54637 6 124 2.99E-38 T 11-11-2016 IPR029069 HotDog domain Gferi_RS09020 60a19e656d2f2a271c2732714ba8bbb3 105 Pfam PF06467 MYM-type Zinc finger with FCS sequence motif 70 96 1.6E-6 T 11-11-2016 IPR010507 Zinc finger, MYM-type GO:0008270 Gferi_RS06715 1f7b637f82bcb81850f19f9df31e689f 712 Gene3D G3DSA:3.30.420.40 3 89 2.3E-5 T 11-11-2016 Gferi_RS06715 1f7b637f82bcb81850f19f9df31e689f 712 Pfam PF01968 Hydantoinase/oxoprolinase 192 500 3.9E-68 T 11-11-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Gferi_RS06715 1f7b637f82bcb81850f19f9df31e689f 712 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 6 171 3.2E-30 T 11-11-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Gferi_RS06715 1f7b637f82bcb81850f19f9df31e689f 712 SUPERFAMILY SSF53067 398 495 5.28E-13 T 11-11-2016 Gferi_RS06715 1f7b637f82bcb81850f19f9df31e689f 712 SUPERFAMILY SSF53067 5 84 5.28E-13 T 11-11-2016 Gferi_RS06715 1f7b637f82bcb81850f19f9df31e689f 712 SUPERFAMILY SSF53067 250 357 5.28E-13 T 11-11-2016 Gferi_RS05095 485735c9382546c31c033f623940b430 422 Pfam PF02371 Transposase IS116/IS110/IS902 family 276 356 6.5E-26 T 11-11-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 Gferi_RS05095 485735c9382546c31c033f623940b430 422 Pfam PF01548 Transposase 8 166 6.9E-32 T 11-11-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 79 91 4.0E-16 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 25 41 4.0E-16 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 127 146 4.0E-16 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 Pfam PF00717 Peptidase S24-like 32 103 3.9E-15 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 Gene3D G3DSA:2.10.109.10 127 173 1.9E-36 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 Gene3D G3DSA:2.10.109.10 22 89 1.9E-36 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 ProSitePatterns PS00501 Signal peptidases I serine active site. 34 41 - T 11-11-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 ProSitePatterns PS00761 Signal peptidases I signature 3. 132 145 - T 11-11-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 9 167 1.2E-48 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Gferi_RS24110 de6fb21b1588373407903a4e12169c32 176 SUPERFAMILY SSF51306 25 171 2.93E-45 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C Gferi_RS02270 6b1cbfacdbd79cf02cc69f81a8d2878c 698 Pfam PF07698 7TM receptor with intracellular HD hydrolase 275 457 7.2E-41 T 11-11-2016 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain Gferi_RS02270 6b1cbfacdbd79cf02cc69f81a8d2878c 698 SMART SM00471 478 635 5.5E-9 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS02270 6b1cbfacdbd79cf02cc69f81a8d2878c 698 SUPERFAMILY SSF109604 481 658 3.05E-17 T 11-11-2016 Gferi_RS02270 6b1cbfacdbd79cf02cc69f81a8d2878c 698 Gene3D G3DSA:1.10.3210.10 478 651 1.6E-23 T 11-11-2016 IPR006674 HD domain Gferi_RS02270 6b1cbfacdbd79cf02cc69f81a8d2878c 698 TIGRFAM TIGR00277 HDIG: HDIG domain 479 577 9.1E-23 T 11-11-2016 IPR006675 HDIG domain Gferi_RS02270 6b1cbfacdbd79cf02cc69f81a8d2878c 698 Pfam PF01966 HD domain 482 625 2.0E-17 T 11-11-2016 IPR006674 HD domain Gferi_RS02270 6b1cbfacdbd79cf02cc69f81a8d2878c 698 Pfam PF07697 7TM-HD extracellular 54 264 4.3E-36 T 11-11-2016 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 ProSitePatterns PS01229 Hypothetical cof family signature 2. 245 267 - T 11-11-2016 Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 291 5.6E-64 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 264 3.9E-29 T 11-11-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 291 3.3E-60 T 11-11-2016 IPR000150 Cof protein GO:0016787 Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 SUPERFAMILY SSF56784 168 295 4.2E-68 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 SUPERFAMILY SSF56784 1 125 4.2E-68 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 Gene3D G3DSA:3.40.50.1000 1 75 6.3E-58 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 Gene3D G3DSA:3.40.50.1000 211 296 6.3E-58 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS04475 3f968dc07fe5ab68d6623c0e85797877 296 Gene3D G3DSA:3.30.1240.10 87 210 6.6E-15 T 11-11-2016 Gferi_RS04400 1fceea25c88a00a663a51d4a18ce03d2 452 SUPERFAMILY SSF52794 2 97 1.41E-35 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS04400 1fceea25c88a00a663a51d4a18ce03d2 452 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 113 448 1.7E-136 T 11-11-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 Gferi_RS04400 1fceea25c88a00a663a51d4a18ce03d2 452 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 1.6E-15 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS04400 1fceea25c88a00a663a51d4a18ce03d2 452 Gene3D G3DSA:3.40.50.2300 1 99 1.8E-40 T 11-11-2016 Gferi_RS04400 1fceea25c88a00a663a51d4a18ce03d2 452 Pfam PF02378 Phosphotransferase system, EIIC 128 392 4.6E-20 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS04400 1fceea25c88a00a663a51d4a18ce03d2 452 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 87 1.0E-33 T 11-11-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 Gferi_RS22175 71b4e576a3f60be6e1192810a3146465 488 Pfam PF05569 BlaR1 peptidase M56 3 282 1.2E-50 T 11-11-2016 IPR008756 Peptidase M56 Gferi_RS17400 969ccc937a2fcaeb55095aa47433b83c 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 207 37.745 T 11-11-2016 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17400 969ccc937a2fcaeb55095aa47433b83c 207 Gene3D G3DSA:3.40.1370.10 58 207 6.3E-68 T 11-11-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 Gferi_RS17400 969ccc937a2fcaeb55095aa47433b83c 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 204 1.1E-85 T 11-11-2016 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17400 969ccc937a2fcaeb55095aa47433b83c 207 Pfam PF00573 Ribosomal protein L4/L1 family 17 204 4.2E-77 T 11-11-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 Gferi_RS17400 969ccc937a2fcaeb55095aa47433b83c 207 SUPERFAMILY SSF52166 1 206 1.96E-86 T 11-11-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 SUPERFAMILY SSF46689 344 392 8.24E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 Gene3D G3DSA:1.10.10.60 343 394 8.8E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 Gene3D G3DSA:1.10.10.60 395 443 5.2E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 Pfam PF10114 Sensory domain found in PocR 22 190 4.3E-45 T 11-11-2016 IPR018771 PocR domain Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 395 437 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 425 441 4.5E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 410 425 4.5E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 Pfam PF12833 Helix-turn-helix domain 364 442 4.0E-20 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 SMART SM00342 358 441 1.8E-29 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS19925 28db64ff418ea2ada19e100657f757be 444 SUPERFAMILY SSF46689 395 443 2.02E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07085 3ecf19913dcd68b0d1a0e6f0e41c4f65 410 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 296 2.4E-19 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS07085 3ecf19913dcd68b0d1a0e6f0e41c4f65 410 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 196 408 5.1E-29 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 Gferi_RS07085 3ecf19913dcd68b0d1a0e6f0e41c4f65 410 Gene3D G3DSA:2.40.50.100 216 248 8.6E-16 T 11-11-2016 Gferi_RS07085 3ecf19913dcd68b0d1a0e6f0e41c4f65 410 Gene3D G3DSA:2.40.50.100 59 89 8.6E-16 T 11-11-2016 Gferi_RS07085 3ecf19913dcd68b0d1a0e6f0e41c4f65 410 SUPERFAMILY SSF51230 52 96 4.59E-7 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS07085 3ecf19913dcd68b0d1a0e6f0e41c4f65 410 SUPERFAMILY SSF111369 166 290 3.01E-5 T 11-11-2016 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 17 95 5.7E-24 T 11-11-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 Gene3D G3DSA:3.10.20.70 6 107 1.3E-28 T 11-11-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 SUPERFAMILY SSF54368 5 97 5.36E-26 T 11-11-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 SMART SM01230 104 382 5.7E-114 T 11-11-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 ProSitePatterns PS00180 Glutamine synthetase signature 1. 52 69 - T 11-11-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 Gene3D G3DSA:3.30.590.10 108 448 6.1E-113 T 11-11-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 SUPERFAMILY SSF55931 104 475 6.96E-112 T 11-11-2016 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 Pfam PF00120 Glutamine synthetase, catalytic domain 105 473 1.4E-104 T 11-11-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Gferi_RS11840 6f32ae11ed1ea8d0016a6ffc67e21c92 476 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 475 3.9E-159 T 11-11-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Gferi_RS25310 91fa8b34a3b91af82f40f22118b50323 453 Gene3D G3DSA:1.10.580.10 19 333 3.6E-74 T 11-11-2016 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 Gferi_RS25310 91fa8b34a3b91af82f40f22118b50323 453 PRINTS PR00143 Citrate synthase signature 231 246 2.3E-30 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 Gferi_RS25310 91fa8b34a3b91af82f40f22118b50323 453 PRINTS PR00143 Citrate synthase signature 175 188 2.3E-30 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 Gferi_RS25310 91fa8b34a3b91af82f40f22118b50323 453 PRINTS PR00143 Citrate synthase signature 404 418 2.3E-30 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 Gferi_RS25310 91fa8b34a3b91af82f40f22118b50323 453 PRINTS PR00143 Citrate synthase signature 254 282 2.3E-30 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 Gferi_RS25310 91fa8b34a3b91af82f40f22118b50323 453 PRINTS PR00143 Citrate synthase signature 384 400 2.3E-30 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 Gferi_RS25310 91fa8b34a3b91af82f40f22118b50323 453 SUPERFAMILY SSF48256 67 442 2.62E-89 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 Gferi_RS25310 91fa8b34a3b91af82f40f22118b50323 453 Pfam PF00285 Citrate synthase, C-terminal domain 43 435 3.7E-110 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 Gferi_RS02555 cd5491774be3064c196d99fca4c36c6d 468 Hamap MF_00675 Uronate isomerase [uxaC]. 2 466 52.395 T 11-11-2016 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 Gferi_RS02555 cd5491774be3064c196d99fca4c36c6d 468 Gene3D G3DSA:1.10.2020.10 46 136 4.5E-44 T 11-11-2016 IPR023177 Uronate isomerase, domain 2 GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 Gferi_RS02555 cd5491774be3064c196d99fca4c36c6d 468 Gene3D G3DSA:3.20.20.140 3 44 5.4E-165 T 11-11-2016 Gferi_RS02555 cd5491774be3064c196d99fca4c36c6d 468 Gene3D G3DSA:3.20.20.140 138 466 5.4E-165 T 11-11-2016 Gferi_RS02555 cd5491774be3064c196d99fca4c36c6d 468 SUPERFAMILY SSF51556 2 465 1.36E-192 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS02555 cd5491774be3064c196d99fca4c36c6d 468 Pfam PF02614 Glucuronate isomerase 1 464 3.4E-233 T 11-11-2016 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 SMART SM00421 148 205 1.6E-21 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 Gene3D G3DSA:1.10.10.10 125 210 7.8E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 Pfam PF00072 Response regulator receiver domain 8 120 1.5E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 SUPERFAMILY SSF46894 145 208 1.36E-18 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 SMART SM00448 6 119 2.1E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 Gene3D G3DSA:3.40.50.2300 4 124 8.4E-34 T 11-11-2016 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 SUPERFAMILY SSF52172 5 137 3.7E-33 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 4.3E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 4.3E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 4.3E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS05290 6687ab778facd66f38fa41d5ffde2c7c 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 204 1.8E-18 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS11980 beb09245a298cc1455c6fc208306e437 366 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 10 239 5.7E-10 T 11-11-2016 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Gferi_RS18800 14f4c338c37f7651e96208835035ba3c 431 Pfam PF07949 YbbR-like protein 53 134 3.2E-7 T 11-11-2016 IPR012505 YbbR-like Gferi_RS18800 14f4c338c37f7651e96208835035ba3c 431 Pfam PF07949 YbbR-like protein 144 227 3.5E-9 T 11-11-2016 IPR012505 YbbR-like Gferi_RS18800 14f4c338c37f7651e96208835035ba3c 431 Pfam PF07949 YbbR-like protein 235 315 1.1E-12 T 11-11-2016 IPR012505 YbbR-like Gferi_RS08735 658d9a854a07675df7d75f340f08e246 346 Pfam PF06089 L-asparaginase II 7 328 2.2E-111 T 11-11-2016 IPR010349 L-asparaginase II Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 SUPERFAMILY SSF53223 5 184 2.49E-66 T 11-11-2016 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 93 107 2.3E-36 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 173 195 2.3E-36 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 215 235 2.3E-36 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 343 354 2.3E-36 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 PIRSF PIRSF000185 3 417 1.0E-165 T 11-11-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 SUPERFAMILY SSF51735 182 417 1.97E-83 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 182 415 6.7E-82 T 11-11-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 SMART SM00839 184 415 1.8E-117 T 11-11-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 38 163 6.7E-52 T 11-11-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 101 114 - T 11-11-2016 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-70614 Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 Gene3D G3DSA:3.40.50.720 182 416 1.0E-89 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS10500 fecbf995e519f29af19990b8d0842413 417 Gene3D G3DSA:3.40.192.10 39 179 1.5E-55 T 11-11-2016 Gferi_RS18115 712e9fba11f083e4d568913a97f3b835 509 Gene3D G3DSA:3.40.50.1390 8 138 4.6E-20 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS18115 712e9fba11f083e4d568913a97f3b835 509 Pfam PF07508 Recombinase 181 298 7.2E-15 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS18115 712e9fba11f083e4d568913a97f3b835 509 Pfam PF14287 Domain of unknown function (DUF4368) 456 500 1.0E-13 T 11-11-2016 IPR025378 Domain of unknown function DUF4368 Gferi_RS18115 712e9fba11f083e4d568913a97f3b835 509 SMART SM00857 9 158 2.2E-35 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS18115 712e9fba11f083e4d568913a97f3b835 509 Pfam PF00239 Resolvase, N terminal domain 9 157 2.6E-20 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS18115 712e9fba11f083e4d568913a97f3b835 509 SUPERFAMILY SSF53041 8 157 4.97E-27 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS18115 712e9fba11f083e4d568913a97f3b835 509 Pfam PF13408 Recombinase zinc beta ribbon domain 311 380 1.2E-12 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS25505 8748c7bdd65704ce671adb133575f940 323 Pfam PF00480 ROK family 12 292 5.4E-52 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS25505 8748c7bdd65704ce671adb133575f940 323 Gene3D G3DSA:3.30.420.40 8 143 5.4E-42 T 11-11-2016 Gferi_RS25505 8748c7bdd65704ce671adb133575f940 323 SUPERFAMILY SSF53067 10 297 2.97E-59 T 11-11-2016 Gferi_RS25505 8748c7bdd65704ce671adb133575f940 323 Gene3D G3DSA:3.30.420.40 144 276 3.8E-37 T 11-11-2016 Gferi_RS11805 b36a7a14246bd3033a5d488bbcee8a9e 455 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 114 306 7.2E-45 T 11-11-2016 Gferi_RS11805 b36a7a14246bd3033a5d488bbcee8a9e 455 SUPERFAMILY SSF49503 337 416 3.65E-5 T 11-11-2016 IPR008972 Cupredoxin Gferi_RS11805 b36a7a14246bd3033a5d488bbcee8a9e 455 Pfam PF00403 Heavy-metal-associated domain 6 67 8.4E-13 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS11805 b36a7a14246bd3033a5d488bbcee8a9e 455 Gene3D G3DSA:2.60.40.420 330 415 4.2E-5 T 11-11-2016 IPR008972 Cupredoxin Gferi_RS11805 b36a7a14246bd3033a5d488bbcee8a9e 455 Gene3D G3DSA:3.30.70.100 3 68 1.6E-19 T 11-11-2016 Gferi_RS11805 b36a7a14246bd3033a5d488bbcee8a9e 455 SUPERFAMILY SSF55008 4 69 2.36E-17 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS11805 b36a7a14246bd3033a5d488bbcee8a9e 455 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 11-11-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Gferi_RS14190 a40ad2d38ddbd42f7f7d545e7837aafe 335 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 223 331 6.9E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14190 a40ad2d38ddbd42f7f7d545e7837aafe 335 SUPERFAMILY SSF55874 175 331 1.02E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS14190 a40ad2d38ddbd42f7f7d545e7837aafe 335 Pfam PF06580 Histidine kinase 120 199 4.1E-24 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS14190 a40ad2d38ddbd42f7f7d545e7837aafe 335 PRINTS PR00344 Bacterial sensor protein C-terminal signature 255 269 7.2E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14190 a40ad2d38ddbd42f7f7d545e7837aafe 335 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 331 7.2E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS14190 a40ad2d38ddbd42f7f7d545e7837aafe 335 Gene3D G3DSA:3.30.565.10 173 332 3.9E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS23200 2acbac5fab0e5910057e3600af0f2a3b 230 Gene3D G3DSA:3.40.50.1000 72 221 1.1E-24 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23200 2acbac5fab0e5910057e3600af0f2a3b 230 Gene3D G3DSA:1.10.150.240 20 71 4.7E-4 T 11-11-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 Gferi_RS23200 2acbac5fab0e5910057e3600af0f2a3b 230 SUPERFAMILY SSF56784 5 215 2.13E-31 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS23200 2acbac5fab0e5910057e3600af0f2a3b 230 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 192 3.1E-11 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS25390 9fed354decb60472354942d84a6b828b 298 SUPERFAMILY SSF103481 198 297 2.48E-11 T 11-11-2016 Gferi_RS25390 9fed354decb60472354942d84a6b828b 298 Pfam PF00892 EamA-like transporter family 159 297 2.1E-19 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS25390 9fed354decb60472354942d84a6b828b 298 Pfam PF00892 EamA-like transporter family 6 142 1.3E-21 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS25390 9fed354decb60472354942d84a6b828b 298 SUPERFAMILY SSF103481 40 145 1.31E-14 T 11-11-2016 Gferi_RS08795 33cc342c584c61fe3bd6f84bc310e1eb 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 288 2.2E-10 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08795 33cc342c584c61fe3bd6f84bc310e1eb 295 SUPERFAMILY SSF161098 9 294 3.14E-46 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08795 33cc342c584c61fe3bd6f84bc310e1eb 295 Gene3D G3DSA:1.10.3720.10 2 279 3.4E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS16925 5e4513b6653f51a644402e75a8852654 257 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 256 37.688 T 11-11-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Gferi_RS16925 5e4513b6653f51a644402e75a8852654 257 Gene3D G3DSA:3.30.420.40 94 256 9.7E-55 T 11-11-2016 Gferi_RS16925 5e4513b6653f51a644402e75a8852654 257 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 252 1.9E-79 T 11-11-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Gferi_RS16925 5e4513b6653f51a644402e75a8852654 257 Pfam PF03309 Type III pantothenate kinase 2 206 4.9E-75 T 11-11-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Gferi_RS16925 5e4513b6653f51a644402e75a8852654 257 SUPERFAMILY SSF53067 123 255 1.81E-38 T 11-11-2016 Gferi_RS16925 5e4513b6653f51a644402e75a8852654 257 SUPERFAMILY SSF53067 1 122 3.02E-38 T 11-11-2016 Gferi_RS08930 13e3a1ffdef70b3ab03679ee098aea56 923 SUPERFAMILY SSF52540 1 271 1.73E-10 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08930 13e3a1ffdef70b3ab03679ee098aea56 923 Pfam PF13514 AAA domain 1 54 1.8E-11 T 11-11-2016 Gferi_RS08930 13e3a1ffdef70b3ab03679ee098aea56 923 Gene3D G3DSA:3.40.50.300 840 911 1.8E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08930 13e3a1ffdef70b3ab03679ee098aea56 923 Gene3D G3DSA:3.40.50.300 778 807 1.8E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08930 13e3a1ffdef70b3ab03679ee098aea56 923 SUPERFAMILY SSF52540 1 90 4.5E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08930 13e3a1ffdef70b3ab03679ee098aea56 923 SUPERFAMILY SSF52540 814 912 4.5E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08930 13e3a1ffdef70b3ab03679ee098aea56 923 Gene3D G3DSA:3.40.50.300 1 141 1.5E-16 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21490 c864b8d507952acf7ad3379033b96199 224 SMART SM00448 2 112 2.2E-42 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21490 c864b8d507952acf7ad3379033b96199 224 SMART SM00862 146 219 1.8E-23 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS21490 c864b8d507952acf7ad3379033b96199 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 1.1E-23 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS21490 c864b8d507952acf7ad3379033b96199 224 SUPERFAMILY SSF52172 2 173 7.18E-42 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS21490 c864b8d507952acf7ad3379033b96199 224 Gene3D G3DSA:1.10.10.10 128 222 1.5E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21490 c864b8d507952acf7ad3379033b96199 224 Gene3D G3DSA:3.40.50.2300 2 119 8.7E-40 T 11-11-2016 Gferi_RS21490 c864b8d507952acf7ad3379033b96199 224 Pfam PF00072 Response regulator receiver domain 4 112 1.3E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15420 52b43d6e12155357b7de7392ae9d9bca 448 Gene3D G3DSA:3.30.1330.120 251 377 5.8E-17 T 11-11-2016 Gferi_RS15420 52b43d6e12155357b7de7392ae9d9bca 448 Pfam PF03972 MmgE/PrpD family 7 420 7.3E-79 T 11-11-2016 IPR005656 MmgE/PrpD GO:0016829 Gferi_RS15420 52b43d6e12155357b7de7392ae9d9bca 448 SUPERFAMILY SSF103378 8 429 5.23E-85 T 11-11-2016 IPR005656 MmgE/PrpD GO:0016829 Gferi_RS03860 6e65ead2e5ae00ea1b2ea8c7382674c3 259 Gene3D G3DSA:3.40.50.300 3 257 5.4E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03860 6e65ead2e5ae00ea1b2ea8c7382674c3 259 SUPERFAMILY SSF52540 1 257 1.56E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03860 6e65ead2e5ae00ea1b2ea8c7382674c3 259 Pfam PF13614 AAA domain 3 183 9.8E-53 T 11-11-2016 IPR025669 AAA domain Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 SMART SM00028 177 210 75.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 SMART SM00028 259 292 1.1E-4 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 SMART SM00028 327 360 3.6E-6 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 SMART SM00028 98 131 51.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 SMART SM00028 293 326 4.1E-6 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 SUPERFAMILY SSF48452 102 360 1.03E-29 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 Pfam PF13424 Tetratricopeptide repeat 294 356 2.8E-11 T 11-11-2016 Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 Pfam PF07719 Tetratricopeptide repeat 261 291 1.8E-6 T 11-11-2016 IPR013105 Tetratricopeptide repeat 2 Gferi_RS03975 9dd8b891a7b1c2c2b40b439fca3c627c 379 Gene3D G3DSA:1.25.40.10 102 363 8.8E-44 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS06555 be684752674cb0edd7ac84aaf79a0bf2 264 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 49 62 - T 11-11-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Gferi_RS06555 be684752674cb0edd7ac84aaf79a0bf2 264 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 9 257 6.3E-86 T 11-11-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Gferi_RS06555 be684752674cb0edd7ac84aaf79a0bf2 264 Gene3D G3DSA:3.20.20.70 4 263 6.8E-100 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS06555 be684752674cb0edd7ac84aaf79a0bf2 264 Pfam PF00290 Tryptophan synthase alpha chain 9 242 5.1E-91 T 11-11-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Gferi_RS06555 be684752674cb0edd7ac84aaf79a0bf2 264 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 15 262 34.98 T 11-11-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Gferi_RS06555 be684752674cb0edd7ac84aaf79a0bf2 264 SUPERFAMILY SSF51366 3 244 2.35E-83 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Gferi_RS16555 afd4b70dd67cfa411d71c63fc015a055 270 Pfam PF03180 NLPA lipoprotein 34 269 4.5E-89 T 11-11-2016 IPR004872 Lipoprotein NlpA family Gferi_RS16555 afd4b70dd67cfa411d71c63fc015a055 270 Gene3D G3DSA:3.40.190.10 33 161 4.8E-52 T 11-11-2016 Gferi_RS16555 afd4b70dd67cfa411d71c63fc015a055 270 SUPERFAMILY SSF53850 34 269 2.72E-82 T 11-11-2016 Gferi_RS16555 afd4b70dd67cfa411d71c63fc015a055 270 PIRSF PIRSF002854 1 270 3.0E-95 T 11-11-2016 IPR004872 Lipoprotein NlpA family Gferi_RS16555 afd4b70dd67cfa411d71c63fc015a055 270 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 16 270 9.9E-73 T 11-11-2016 IPR004872 Lipoprotein NlpA family Gferi_RS00440 f8b954a5d452abf3c44231438aee89d3 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 63 75 1.3E-21 T 11-11-2016 IPR003004 GspF/PilC family Gferi_RS00440 f8b954a5d452abf3c44231438aee89d3 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 381 400 1.3E-21 T 11-11-2016 IPR003004 GspF/PilC family Gferi_RS00440 f8b954a5d452abf3c44231438aee89d3 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 162 190 1.3E-21 T 11-11-2016 IPR003004 GspF/PilC family Gferi_RS00440 f8b954a5d452abf3c44231438aee89d3 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 365 379 1.3E-21 T 11-11-2016 IPR003004 GspF/PilC family Gferi_RS00440 f8b954a5d452abf3c44231438aee89d3 401 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 162 190 - T 11-11-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 Gferi_RS00440 f8b954a5d452abf3c44231438aee89d3 401 Pfam PF00482 Type II secretion system (T2SS), protein F 67 190 4.4E-30 T 11-11-2016 IPR018076 Type II secretion system F domain Gferi_RS00440 f8b954a5d452abf3c44231438aee89d3 401 Pfam PF00482 Type II secretion system (T2SS), protein F 270 392 7.3E-30 T 11-11-2016 IPR018076 Type II secretion system F domain Gferi_RS10180 b086d33a64395e3b4ffe5cd4827e4ae5 256 Pfam PF04199 Putative cyclase 4 184 8.9E-39 T 11-11-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734 Gferi_RS10180 b086d33a64395e3b4ffe5cd4827e4ae5 256 Gene3D G3DSA:3.50.30.50 1 255 4.7E-66 T 11-11-2016 Gferi_RS10180 b086d33a64395e3b4ffe5cd4827e4ae5 256 SUPERFAMILY SSF102198 1 254 7.72E-58 T 11-11-2016 Gferi_RS18100 c2515e6cdfe86bb3b4b136e291ed64b0 130 SUPERFAMILY SSF55729 2 121 8.02E-20 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS18100 c2515e6cdfe86bb3b4b136e291ed64b0 130 Gene3D G3DSA:3.40.630.30 1 121 4.1E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS18100 c2515e6cdfe86bb3b4b136e291ed64b0 130 Pfam PF13673 Acetyltransferase (GNAT) domain 30 119 4.6E-11 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS12050 31b3223cb99abd9fa11f4ed210c4ddab 74 SUPERFAMILY SSF64307 4 71 8.11E-18 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS12050 31b3223cb99abd9fa11f4ed210c4ddab 74 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 6 30 - T 11-11-2016 IPR001455 TusA-like domain Gferi_RS12050 31b3223cb99abd9fa11f4ed210c4ddab 74 Pfam PF01206 Sulfurtransferase TusA 5 71 3.7E-20 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS12050 31b3223cb99abd9fa11f4ed210c4ddab 74 Gene3D G3DSA:3.30.110.40 2 73 1.2E-25 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 Pfam PF10114 Sensory domain found in PocR 9 171 1.0E-52 T 11-11-2016 IPR018771 PocR domain Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 410 1.8E-6 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 336 350 1.8E-6 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 388 1.8E-6 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 303 412 6.2E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 SUPERFAMILY SSF55874 261 410 3.26E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 Gene3D G3DSA:3.30.565.10 257 411 2.6E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 Pfam PF06580 Histidine kinase 205 284 3.2E-26 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS18380 8a2d3932f033b261ff4ac4eeb8ff8404 415 SMART SM00387 295 413 0.0019 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21700 6905721784645c0c04f1caf59fa942d4 343 Gene3D G3DSA:3.30.70.20 171 222 1.0E-16 T 11-11-2016 Gferi_RS21700 6905721784645c0c04f1caf59fa942d4 343 Pfam PF13187 4Fe-4S dicluster domain 189 233 1.8E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS21700 6905721784645c0c04f1caf59fa942d4 343 SUPERFAMILY SSF54862 143 261 2.04E-20 T 11-11-2016 Gferi_RS21700 6905721784645c0c04f1caf59fa942d4 343 Pfam PF04015 Domain of unknown function (DUF362) 40 303 1.5E-31 T 11-11-2016 IPR007160 Domain of unknown function DUF362 Gferi_RS21700 6905721784645c0c04f1caf59fa942d4 343 Gene3D G3DSA:3.30.70.20 223 279 6.3E-5 T 11-11-2016 Gferi_RS21700 6905721784645c0c04f1caf59fa942d4 343 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 218 229 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS20645 183c119ec29d1a6136081f56936bd160 481 SUPERFAMILY SSF53756 6 477 1.5E-129 T 11-11-2016 Gferi_RS20645 183c119ec29d1a6136081f56936bd160 481 Pfam PF00534 Glycosyl transferases group 1 287 441 5.0E-12 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS20645 183c119ec29d1a6136081f56936bd160 481 Pfam PF08323 Starch synthase catalytic domain 3 238 4.7E-85 T 11-11-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Gferi_RS20645 183c119ec29d1a6136081f56936bd160 481 Gene3D G3DSA:3.40.50.2000 251 454 5.1E-68 T 11-11-2016 Gferi_RS20645 183c119ec29d1a6136081f56936bd160 481 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 2 472 1.5E-175 T 11-11-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Gferi_RS20645 183c119ec29d1a6136081f56936bd160 481 Hamap MF_00484 Glycogen synthase [glgA]. 2 474 46.433 T 11-11-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Gferi_RS16300 8d6674587447fe6ec4f8b549120ed8d0 465 Pfam PF02436 Conserved carboxylase domain 296 447 1.9E-52 T 11-11-2016 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Gferi_RS16300 8d6674587447fe6ec4f8b549120ed8d0 465 Gene3D G3DSA:1.10.10.60 410 445 1.5E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS16300 8d6674587447fe6ec4f8b549120ed8d0 465 SUPERFAMILY SSF89000 299 448 7.06E-52 T 11-11-2016 Gferi_RS16300 8d6674587447fe6ec4f8b549120ed8d0 465 Gene3D G3DSA:3.20.20.70 2 279 8.9E-115 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS16300 8d6674587447fe6ec4f8b549120ed8d0 465 Pfam PF00682 HMGL-like 3 268 5.5E-50 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 Gferi_RS16300 8d6674587447fe6ec4f8b549120ed8d0 465 SUPERFAMILY SSF51569 2 281 1.15E-89 T 11-11-2016 Gferi_RS14160 4ee4bac759de6479ef037a6d6acb0db6 135 Gene3D G3DSA:3.40.1490.10 1 135 2.4E-30 T 11-11-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 Gferi_RS14160 4ee4bac759de6479ef037a6d6acb0db6 135 SUPERFAMILY SSF102462 1 135 6.8E-35 T 11-11-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 Gferi_RS14160 4ee4bac759de6479ef037a6d6acb0db6 135 Pfam PF09391 Protein of unknown function (DUF2000) 1 135 2.5E-41 T 11-11-2016 IPR018988 Protein of unknown function DUF2000 Gferi_RS14160 4ee4bac759de6479ef037a6d6acb0db6 135 PIRSF PIRSF033736 1 135 3.5E-34 T 11-11-2016 IPR017021 Uncharacterised conserved protein UCP033763 Gferi_RS13790 822a44f80c6778b68105da378a3797b4 417 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 1.9E-173 T 11-11-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS13790 822a44f80c6778b68105da378a3797b4 417 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 44.678 T 11-11-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Gferi_RS13790 822a44f80c6778b68105da378a3797b4 417 Gene3D G3DSA:3.65.10.10 221 416 9.2E-62 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS13790 822a44f80c6778b68105da378a3797b4 417 Gene3D G3DSA:3.65.10.10 22 220 1.3E-62 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS13790 822a44f80c6778b68105da378a3797b4 417 SUPERFAMILY SSF55205 1 416 7.03E-137 T 11-11-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Gferi_RS13790 822a44f80c6778b68105da378a3797b4 417 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 5.8E-97 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 Gferi_RS06405 861bbb6c9a0fb8073ef18b31e3109c03 173 Gene3D G3DSA:3.90.79.10 2 171 5.5E-57 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS06405 861bbb6c9a0fb8073ef18b31e3109c03 173 ProSitePatterns PS00893 Nudix box signature. 72 93 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS06405 861bbb6c9a0fb8073ef18b31e3109c03 173 Pfam PF00293 NUDIX domain 37 137 1.2E-19 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS06405 861bbb6c9a0fb8073ef18b31e3109c03 173 SUPERFAMILY SSF55811 2 171 3.38E-47 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS08645 41f2b46644b64cde8c751eb5bb786b7f 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 4.9E-7 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08645 41f2b46644b64cde8c751eb5bb786b7f 209 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 4.9E-7 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08645 41f2b46644b64cde8c751eb5bb786b7f 209 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 59 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS08645 41f2b46644b64cde8c751eb5bb786b7f 209 SUPERFAMILY SSF48498 87 207 8.81E-7 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS08645 41f2b46644b64cde8c751eb5bb786b7f 209 SUPERFAMILY SSF46689 5 80 1.25E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08645 41f2b46644b64cde8c751eb5bb786b7f 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 62 1.0E-10 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08645 41f2b46644b64cde8c751eb5bb786b7f 209 Gene3D G3DSA:1.10.357.10 10 209 6.9E-30 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS14555 019c567f3e5875a52c03cbe5b685de2a 144 SUPERFAMILY SSF69279 4 141 1.87E-40 T 11-11-2016 Gferi_RS14555 019c567f3e5875a52c03cbe5b685de2a 144 Pfam PF09393 Phage tail tube protein 4 139 5.3E-48 T 11-11-2016 IPR018989 Phage tail tube protein Gferi_RS21955 2a69a67295a018a51f248c9c297c8e6e 225 ProDom PD037589 AROM ARO OPERON REGULATED BY AROR BIOSYNTHESIS TRANSCRIPTION AMINO AROMATIC 4 222 6.0E-53 T 11-11-2016 IPR010843 Uncharacterised protein family AroM Gferi_RS21955 2a69a67295a018a51f248c9c297c8e6e 225 Pfam PF07302 AroM protein 5 223 1.8E-80 T 11-11-2016 IPR010843 Uncharacterised protein family AroM Gferi_RS07875 24e65cf2a6a5da05efc147e16694a0f7 430 PIRSF PIRSF006066 6 430 6.2E-144 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS07875 24e65cf2a6a5da05efc147e16694a0f7 430 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 23 426 8.0E-125 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS07875 24e65cf2a6a5da05efc147e16694a0f7 430 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 420 5.2E-112 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS21820 3389ee066a53da08537d33266bf6689f 125 SUPERFAMILY SSF52172 1 121 1.1E-30 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS21820 3389ee066a53da08537d33266bf6689f 125 Gene3D G3DSA:3.40.50.2300 6 122 3.9E-28 T 11-11-2016 Gferi_RS21820 3389ee066a53da08537d33266bf6689f 125 SMART SM00448 4 116 4.2E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS21820 3389ee066a53da08537d33266bf6689f 125 Pfam PF00072 Response regulator receiver domain 6 116 2.4E-24 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS05020 5a9b1f4202c1e1a67cf6847865c7520a 79 SUPERFAMILY SSF47413 2 69 2.73E-13 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS05020 5a9b1f4202c1e1a67cf6847865c7520a 79 Gene3D G3DSA:1.10.260.40 2 70 1.8E-22 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS05020 5a9b1f4202c1e1a67cf6847865c7520a 79 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 10 67 1.9E-8 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS05020 5a9b1f4202c1e1a67cf6847865c7520a 79 SMART SM00530 10 66 1.3E-5 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS08950 767d793161bdc167794f697dd51d9669 109 Pfam PF09685 Domain of unknown function (DUF4870) 12 105 6.5E-20 T 11-11-2016 IPR019109 Protein of unknown function DUF4870 Gferi_RS01375 f36cb244e432640463ba428abcc05284 607 SUPERFAMILY SSF52540 200 327 2.95E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01375 f36cb244e432640463ba428abcc05284 607 SUPERFAMILY SSF52540 414 559 2.95E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01375 f36cb244e432640463ba428abcc05284 607 Gene3D G3DSA:3.40.50.300 223 287 2.2E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01375 f36cb244e432640463ba428abcc05284 607 Gene3D G3DSA:3.40.50.300 423 551 2.2E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12915 3728467da75ac43ea063116088ca8a4d 313 Pfam PF03547 Membrane transport protein 159 307 1.2E-14 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Gferi_RS12915 3728467da75ac43ea063116088ca8a4d 313 Pfam PF03547 Membrane transport protein 7 151 3.2E-12 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Gferi_RS01500 0365bdd224155cb471aa619bac6e864a 115 PRINTS PR00061 Ribosomal protein L19 signature 87 112 5.3E-40 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01500 0365bdd224155cb471aa619bac6e864a 115 PRINTS PR00061 Ribosomal protein L19 signature 3 32 5.3E-40 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01500 0365bdd224155cb471aa619bac6e864a 115 PRINTS PR00061 Ribosomal protein L19 signature 33 62 5.3E-40 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01500 0365bdd224155cb471aa619bac6e864a 115 SUPERFAMILY SSF50104 1 112 6.52E-45 T 11-11-2016 IPR008991 Translation protein SH3-like domain Gferi_RS01500 0365bdd224155cb471aa619bac6e864a 115 PIRSF PIRSF002191 1 114 6.4E-49 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01500 0365bdd224155cb471aa619bac6e864a 115 Pfam PF01245 Ribosomal protein L19 3 112 1.7E-49 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01500 0365bdd224155cb471aa619bac6e864a 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 113 31.343 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01500 0365bdd224155cb471aa619bac6e864a 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 112 9.0E-49 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS07895 4f7ebd88d801f942d53d3d2a3856eed2 291 Gene3D G3DSA:1.10.1660.10 2 97 1.4E-20 T 11-11-2016 Gferi_RS07895 4f7ebd88d801f942d53d3d2a3856eed2 291 Pfam PF13411 MerR HTH family regulatory protein 3 67 3.1E-15 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS07895 4f7ebd88d801f942d53d3d2a3856eed2 291 SMART SM00422 1 69 1.2E-13 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS07895 4f7ebd88d801f942d53d3d2a3856eed2 291 SUPERFAMILY SSF46955 3 92 4.03E-17 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS07535 5810da4e18114ac544398763e0a95a0a 371 Pfam PF13343 Bacterial extracellular solute-binding protein 108 332 8.3E-43 T 11-11-2016 Gferi_RS07535 5810da4e18114ac544398763e0a95a0a 371 Gene3D G3DSA:3.40.190.10 9 154 1.0E-24 T 11-11-2016 Gferi_RS07535 5810da4e18114ac544398763e0a95a0a 371 Gene3D G3DSA:3.40.190.10 295 344 1.0E-24 T 11-11-2016 Gferi_RS07535 5810da4e18114ac544398763e0a95a0a 371 Gene3D G3DSA:3.40.190.10 159 294 5.1E-19 T 11-11-2016 Gferi_RS07535 5810da4e18114ac544398763e0a95a0a 371 SUPERFAMILY SSF53850 57 364 1.61E-47 T 11-11-2016 Gferi_RS21485 f9e2aeb0f524a27968010b67dc1b193e 259 SUPERFAMILY SSF143422 6 126 3.27E-24 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21485 f9e2aeb0f524a27968010b67dc1b193e 259 Pfam PF01797 Transposase IS200 like 13 123 9.8E-17 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21485 f9e2aeb0f524a27968010b67dc1b193e 259 SMART SM01321 9 123 1.6E-35 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21485 f9e2aeb0f524a27968010b67dc1b193e 259 Gene3D G3DSA:3.30.70.1290 6 126 4.8E-15 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS18880 066f74b169ce4e3d4b24117f1da46ec5 385 PIRSF PIRSF000524 1 385 1.3E-132 T 11-11-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 Gferi_RS18880 066f74b169ce4e3d4b24117f1da46ec5 385 Gene3D G3DSA:3.90.1150.10 260 368 1.6E-37 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS18880 066f74b169ce4e3d4b24117f1da46ec5 385 SUPERFAMILY SSF53383 4 367 2.42E-102 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS18880 066f74b169ce4e3d4b24117f1da46ec5 385 Pfam PF00266 Aminotransferase class-V 7 333 3.6E-38 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS18880 066f74b169ce4e3d4b24117f1da46ec5 385 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 186 206 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Gferi_RS18880 066f74b169ce4e3d4b24117f1da46ec5 385 Gene3D G3DSA:3.40.640.10 17 259 1.0E-52 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS04000 f7edf5c089dc57b04dc2ae9e48dcda86 171 Pfam PF12671 Putative amidase domain 12 161 5.0E-36 T 11-11-2016 IPR024301 Putative amidase domain Gferi_RS08235 3161fb4e0e1679051ad07d8701cc37d1 323 SUPERFAMILY SSF53659 1 321 4.03E-76 T 11-11-2016 Gferi_RS08235 3161fb4e0e1679051ad07d8701cc37d1 323 Gene3D G3DSA:3.40.50.10750 135 297 7.3E-51 T 11-11-2016 Gferi_RS08235 3161fb4e0e1679051ad07d8701cc37d1 323 PIRSF PIRSF000428 1 323 1.1E-84 T 11-11-2016 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS08235 3161fb4e0e1679051ad07d8701cc37d1 323 Pfam PF01515 Phosphate acetyl/butaryl transferase 2 321 1.3E-92 T 11-11-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS06375 44b6052eccfec44b16e53f38ff2f2c52 631 Gene3D G3DSA:3.40.50.2030 406 631 1.2E-85 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS06375 44b6052eccfec44b16e53f38ff2f2c52 631 Gene3D G3DSA:1.20.1270.30 65 236 1.8E-73 T 11-11-2016 IPR016101 CO dehydrogenase, alpha-bundle GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS06375 44b6052eccfec44b16e53f38ff2f2c52 631 TIGRFAM TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit 13 631 2.5E-211 T 11-11-2016 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS06375 44b6052eccfec44b16e53f38ff2f2c52 631 PIRSF PIRSF005023 1 631 1.8E-234 T 11-11-2016 IPR010047 Ni-containing CO dehydrogenase GO:0006091|GO:0016151|GO:0018492|GO:0051539|GO:0055114 MetaCyc: PWY-5372|MetaCyc: PWY-6780 Gferi_RS06375 44b6052eccfec44b16e53f38ff2f2c52 631 Gene3D G3DSA:3.40.50.2030 238 405 2.6E-75 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS06375 44b6052eccfec44b16e53f38ff2f2c52 631 SUPERFAMILY SSF56821 12 631 4.45E-189 T 11-11-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 Gferi_RS06375 44b6052eccfec44b16e53f38ff2f2c52 631 Pfam PF03063 Prismane/CO dehydrogenase family 46 611 6.3E-172 T 11-11-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Gferi_RS05440 69155a58e1fc0d93034828ed9b1bea24 254 Hamap MF_00727 Protein-glutamine gamma-glutamyltransferase [tgl]. 1 249 40.037 T 11-11-2016 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 Gferi_RS05440 69155a58e1fc0d93034828ed9b1bea24 254 ProDom PD119415 TRANSGLUTAMINASE TRANSFERASE ACYLTRANSFERASE GAMMA-GLUTAMYLTRANSFERASE PROTEIN-GLUTAMINE TGASE SPORULATION TGL 24 247 8.0E-59 T 11-11-2016 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 Gferi_RS10620 af17ee6023d782ca844e6a6a9f75544c 154 Gene3D G3DSA:3.40.50.300 3 150 5.7E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10620 af17ee6023d782ca844e6a6a9f75544c 154 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 137 5.8E-42 T 11-11-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Gferi_RS10620 af17ee6023d782ca844e6a6a9f75544c 154 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 7 127 7.3E-41 T 11-11-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Gferi_RS10620 af17ee6023d782ca844e6a6a9f75544c 154 SUPERFAMILY SSF52540 23 123 2.15E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08210 938ffda1b973627a8a0115a395865af9 268 SUPERFAMILY SSF56524 118 263 3.14E-12 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08210 938ffda1b973627a8a0115a395865af9 268 Gene3D G3DSA:3.90.420.10 86 250 1.3E-10 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08210 938ffda1b973627a8a0115a395865af9 268 Pfam PF00174 Oxidoreductase molybdopterin binding domain 118 262 2.7E-10 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 Gene3D G3DSA:3.30.565.10 193 343 4.6E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 SMART SM00387 232 342 1.8E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 SMART SM00304 69 121 2.6E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 SMART SM00388 122 188 5.4E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 123 187 1.9E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 Gene3D G3DSA:1.10.287.130 112 184 8.0E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 269 283 8.8E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 326 339 8.8E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 287 297 8.8E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 302 320 8.8E-16 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 Pfam PF00672 HAMP domain 50 116 1.0E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 SUPERFAMILY SSF158472 69 117 3.79E-8 T 11-11-2016 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 341 4.0E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 SUPERFAMILY SSF47384 105 188 3.53E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS18995 c6ebe62f8eeedb82f155dd6cffa8f709 349 SUPERFAMILY SSF55874 178 340 8.25E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS04455 39932e46580acc6006a92a95ea1eef1f 212 SMART SM00849 12 191 5.5E-38 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS04455 39932e46580acc6006a92a95ea1eef1f 212 SUPERFAMILY SSF56281 1 206 7.21E-53 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS04455 39932e46580acc6006a92a95ea1eef1f 212 Pfam PF00753 Metallo-beta-lactamase superfamily 16 171 2.9E-27 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS04455 39932e46580acc6006a92a95ea1eef1f 212 Gene3D G3DSA:3.60.15.10 4 203 3.6E-55 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS23585 28658e9813766dc13642a397083afc7e 418 Pfam PF04860 Phage portal protein 46 379 6.5E-121 T 11-11-2016 IPR006944 Bacteriophage/Gene transfer agent portal protein Gferi_RS23585 28658e9813766dc13642a397083afc7e 418 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 36 383 2.3E-99 T 11-11-2016 IPR006427 Phage portal protein, HK97 Gferi_RS19835 e3e2e6dfeb70b2b892ea9e46cbad2d94 329 Gene3D G3DSA:3.90.25.10 171 222 7.3E-50 T 11-11-2016 Gferi_RS19835 e3e2e6dfeb70b2b892ea9e46cbad2d94 329 Gene3D G3DSA:3.90.25.10 254 328 7.3E-50 T 11-11-2016 Gferi_RS19835 e3e2e6dfeb70b2b892ea9e46cbad2d94 329 SUPERFAMILY SSF51735 1 327 6.24E-101 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19835 e3e2e6dfeb70b2b892ea9e46cbad2d94 329 Gene3D G3DSA:3.40.50.720 1 170 8.5E-55 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19835 e3e2e6dfeb70b2b892ea9e46cbad2d94 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 252 4.0E-60 T 11-11-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 Gferi_RS19835 e3e2e6dfeb70b2b892ea9e46cbad2d94 329 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 326 5.1E-134 T 11-11-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Gferi_RS24250 1043051d5d84e1205aa2f9ac8b8863e5 212 Gene3D G3DSA:3.30.950.10 107 205 2.5E-23 T 11-11-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24250 1043051d5d84e1205aa2f9ac8b8863e5 212 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 6 202 2.8E-56 T 11-11-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 Gferi_RS24250 1043051d5d84e1205aa2f9ac8b8863e5 212 SUPERFAMILY SSF53790 3 203 4.32E-38 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24250 1043051d5d84e1205aa2f9ac8b8863e5 212 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 185 1.6E-21 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24250 1043051d5d84e1205aa2f9ac8b8863e5 212 Gene3D G3DSA:3.40.1010.10 2 106 1.2E-22 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS05875 759c6367c5a396fa656df7fb3ec698c1 153 Pfam PF07670 Nucleoside recognition 17 106 2.5E-7 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS22215 cb7d3b05cb233cb717a874e78071f6a3 873 Pfam PF00391 PEP-utilising enzyme, mobile domain 797 868 5.6E-21 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS22215 cb7d3b05cb233cb717a874e78071f6a3 873 SUPERFAMILY SSF52009 767 871 6.93E-27 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS22215 cb7d3b05cb233cb717a874e78071f6a3 873 SUPERFAMILY SSF56059 1 327 3.3E-98 T 11-11-2016 Gferi_RS22215 cb7d3b05cb233cb717a874e78071f6a3 873 Gene3D G3DSA:3.50.30.10 770 870 3.0E-26 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS22215 cb7d3b05cb233cb717a874e78071f6a3 873 Gene3D G3DSA:3.30.470.20 186 329 4.5E-47 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS22215 cb7d3b05cb233cb717a874e78071f6a3 873 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 18 315 8.0E-97 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS22215 cb7d3b05cb233cb717a874e78071f6a3 873 Gene3D G3DSA:3.30.1490.20 1 185 2.9E-63 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 Hamap MF_00163 Peptide deformylase [def]. 2 146 26.894 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 PIRSF PIRSF004749 1 146 1.5E-48 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 Pfam PF01327 Polypeptide deformylase 4 144 8.7E-46 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 144 3.7E-46 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 PRINTS PR01576 Peptide deformylase signature 33 62 1.2E-33 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 PRINTS PR01576 Peptide deformylase signature 98 116 1.2E-33 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 PRINTS PR01576 Peptide deformylase signature 117 146 1.2E-33 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 PRINTS PR01576 Peptide deformylase signature 86 97 1.2E-33 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 Gene3D G3DSA:3.90.45.10 5 145 6.4E-53 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS01710 5e60bee9cb6c2a4fce4bd2c92bd48180 146 SUPERFAMILY SSF56420 2 145 1.7E-53 T 11-11-2016 IPR023635 Peptide deformylase Gferi_RS15615 60d92278e6a3ee63c32ab47def102ded 595 Pfam PF09706 CRISPR-associated protein (Cas_CXXC_CXXC) 268 313 2.1E-6 T 11-11-2016 IPR019121 CRISPR-associated protein, CXXC-CXXC domain Gferi_RS15615 60d92278e6a3ee63c32ab47def102ded 595 TIGRFAM TIGR01908 cas_CXXC_CXXC: CRISPR-associated protein Cas8b1/Cst1, subtype I-B/TNEAP 273 549 3.2E-23 T 11-11-2016 IPR010180 CRISPR-associated protein, CXXC-CXXC Gferi_RS02525 4175c7753904ec74b77dcebe5e1f91d2 431 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 22 425 2.8E-132 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS02525 4175c7753904ec74b77dcebe5e1f91d2 431 PIRSF PIRSF006066 5 431 5.9E-161 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS02525 4175c7753904ec74b77dcebe5e1f91d2 431 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 420 4.6E-119 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS21120 48ad680d9d49bbf2e7d710b4c903fd5e 470 Pfam PF13271 Domain of unknown function (DUF4062) 6 87 5.9E-27 T 11-11-2016 IPR025139 Domain of unknown function DUF4062 Gferi_RS17730 e74c5fe7e9938ac472a645fd50badce8 420 Gene3D G3DSA:1.10.10.60 363 389 2.8E-5 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17730 e74c5fe7e9938ac472a645fd50badce8 420 Pfam PF13556 PucR C-terminal helix-turn-helix domain 355 411 1.2E-14 T 11-11-2016 IPR025736 PucR C-terminal helix-turn-helix domain Gferi_RS07500 3d4025cb48e04af413c3f485068d131e 610 SUPERFAMILY SSF55781 179 348 2.12E-10 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS07500 3d4025cb48e04af413c3f485068d131e 610 Gene3D G3DSA:3.30.450.40 286 334 6.9E-6 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS16880 22a7e2099461f5728f11544a98e17d41 132 Pfam PF02310 B12 binding domain 5 116 4.6E-21 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16880 22a7e2099461f5728f11544a98e17d41 132 Gene3D G3DSA:3.40.50.280 2 130 2.3E-56 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS16880 22a7e2099461f5728f11544a98e17d41 132 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 4 131 3.1E-53 T 11-11-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS16880 22a7e2099461f5728f11544a98e17d41 132 SUPERFAMILY SSF52242 2 129 1.96E-49 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 SMART SM00283 132 400 2.0E-46 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 Gene3D G3DSA:1.10.287.950 148 364 6.3E-46 T 11-11-2016 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 SUPERFAMILY SSF58104 92 105 2.88E-59 T 11-11-2016 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 SUPERFAMILY SSF58104 138 395 2.88E-59 T 11-11-2016 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 203 384 1.6E-40 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 Gene3D G3DSA:3.40.190.100 490 603 1.6E-24 T 11-11-2016 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 Gene3D G3DSA:3.40.190.10 409 488 1.7E-20 T 11-11-2016 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 Gene3D G3DSA:3.40.190.10 604 650 1.7E-20 T 11-11-2016 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 409 649 5.3E-44 T 11-11-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Gferi_RS02955 9e575863e5662084baf23e1aecc6b9cf 653 SUPERFAMILY SSF53850 409 650 4.01E-51 T 11-11-2016 Gferi_RS19510 413ecfa5f619ba038f04f7b7c3c644a9 222 Gene3D G3DSA:3.40.50.300 2 220 1.9E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19510 413ecfa5f619ba038f04f7b7c3c644a9 222 SUPERFAMILY SSF52540 3 221 1.66E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19510 413ecfa5f619ba038f04f7b7c3c644a9 222 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS19510 413ecfa5f619ba038f04f7b7c3c644a9 222 Pfam PF00005 ABC transporter 24 169 1.6E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19510 413ecfa5f619ba038f04f7b7c3c644a9 222 SMART SM00382 32 218 1.5E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS19185 d46d61777c0187df3883671b3811e5dc 243 SUPERFAMILY SSF53335 16 197 1.17E-33 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS19185 d46d61777c0187df3883671b3811e5dc 243 Pfam PF08241 Methyltransferase domain 44 135 1.1E-19 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Gferi_RS19185 d46d61777c0187df3883671b3811e5dc 243 Gene3D G3DSA:3.40.50.150 36 193 2.0E-34 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS15470 57add93df00418fc14614d5181b56de3 579 Gene3D G3DSA:3.60.110.10 291 550 3.2E-51 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS15470 57add93df00418fc14614d5181b56de3 579 Pfam PF00795 Carbon-nitrogen hydrolase 9 232 8.5E-41 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS15470 57add93df00418fc14614d5181b56de3 579 Pfam PF00795 Carbon-nitrogen hydrolase 292 521 1.4E-32 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS15470 57add93df00418fc14614d5181b56de3 579 SUPERFAMILY SSF56317 7 271 2.22E-61 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS15470 57add93df00418fc14614d5181b56de3 579 SUPERFAMILY SSF56317 289 550 9.55E-47 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS15470 57add93df00418fc14614d5181b56de3 579 Gene3D G3DSA:3.60.110.10 6 273 3.9E-67 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS12575 0ec45963ee5c1f9ee2957516121cdb26 180 Gene3D G3DSA:3.40.630.30 2 166 4.7E-18 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS12575 0ec45963ee5c1f9ee2957516121cdb26 180 SUPERFAMILY SSF55729 4 169 1.32E-17 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS12575 0ec45963ee5c1f9ee2957516121cdb26 180 Pfam PF00583 Acetyltransferase (GNAT) family 62 164 1.9E-11 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS13525 57b06be58652d5b762c48ca926260a38 402 Pfam PF01566 Natural resistance-associated macrophage protein 42 370 1.9E-24 T 11-11-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 Gferi_RS11290 da2a758ff36a8e7cf78ed03f0acca8f9 302 Gene3D G3DSA:3.90.550.10 4 274 1.5E-77 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS11290 da2a758ff36a8e7cf78ed03f0acca8f9 302 Pfam PF00483 Nucleotidyl transferase 5 266 1.7E-36 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS11290 da2a758ff36a8e7cf78ed03f0acca8f9 302 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 264 1.2E-124 T 11-11-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 Gferi_RS11290 da2a758ff36a8e7cf78ed03f0acca8f9 302 SUPERFAMILY SSF53448 1 276 1.31E-70 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS22585 1aed0543a75d8081ae5024cd39cebda2 128 Gene3D G3DSA:2.60.120.10 3 113 5.2E-4 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS22585 1aed0543a75d8081ae5024cd39cebda2 128 SUPERFAMILY SSF51182 4 114 5.94E-5 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS08580 d22abee9b942b0b1fa0357aff15a09a8 253 SUPERFAMILY SSF161098 51 232 3.14E-27 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08580 d22abee9b942b0b1fa0357aff15a09a8 253 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 240 1.1E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08580 d22abee9b942b0b1fa0357aff15a09a8 253 Gene3D G3DSA:1.10.3720.10 53 241 1.8E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS16580 27eb1d00674bcb3d8a3215167042004a 171 Gene3D G3DSA:3.40.30.10 9 170 1.5E-40 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS16580 27eb1d00674bcb3d8a3215167042004a 171 ProSitePatterns PS01265 Tpx family signature. 88 99 - T 11-11-2016 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 Gferi_RS16580 27eb1d00674bcb3d8a3215167042004a 171 Hamap MF_00269 Probable thiol peroxidase [tpx]. 8 168 35.03 T 11-11-2016 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 Gferi_RS16580 27eb1d00674bcb3d8a3215167042004a 171 SUPERFAMILY SSF52833 9 165 1.09E-37 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS16580 27eb1d00674bcb3d8a3215167042004a 171 Pfam PF08534 Redoxin 24 164 7.6E-21 T 11-11-2016 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Gferi_RS14970 eaafd13afa6ba6ef58d2886740a5d680 358 Gene3D G3DSA:3.40.630.30 181 315 3.2E-7 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS14970 eaafd13afa6ba6ef58d2886740a5d680 358 SUPERFAMILY SSF55729 117 338 9.3E-11 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 SUPERFAMILY SSF53067 7 142 1.18E-40 T 11-11-2016 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 Gene3D G3DSA:3.30.420.40 7 153 6.6E-45 T 11-11-2016 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 6 330 1.6E-143 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 Gene3D G3DSA:3.30.420.40 154 180 2.4E-32 T 11-11-2016 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 Gene3D G3DSA:3.30.420.40 257 310 2.4E-32 T 11-11-2016 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 Pfam PF06723 MreB/Mbl protein 7 329 2.4E-145 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 181 201 2.0E-55 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 63 86 2.0E-55 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 43 61 2.0E-55 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 126 145 2.0E-55 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 294 320 2.0E-55 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 SUPERFAMILY SSF53067 143 325 7.56E-49 T 11-11-2016 Gferi_RS10955 b969d38b99d290e44b6676302abaef84 343 Gene3D G3DSA:3.90.640.10 181 253 2.3E-30 T 11-11-2016 Gferi_RS18325 6ee80bb4145512eb75fa66f93b33a9e4 215 PIRSF PIRSF010130 1 214 1.2E-83 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS18325 6ee80bb4145512eb75fa66f93b33a9e4 215 Pfam PF06130 Phosphate propanoyltransferase 28 107 1.3E-28 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS18325 6ee80bb4145512eb75fa66f93b33a9e4 215 Pfam PF06130 Phosphate propanoyltransferase 138 201 7.5E-15 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS07270 60fb2162a5de78313f67af807ccd086a 80 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 66 1.9E-21 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS07270 60fb2162a5de78313f67af807ccd086a 80 Gene3D G3DSA:1.10.260.40 1 68 1.8E-14 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS07270 60fb2162a5de78313f67af807ccd086a 80 SMART SM00530 6 62 0.0023 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS07270 60fb2162a5de78313f67af807ccd086a 80 SUPERFAMILY SSF47413 1 70 1.41E-16 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS08685 a04254831856fa628e79638b19b1644b 340 Gene3D G3DSA:3.40.1190.20 1 336 8.3E-87 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS08685 a04254831856fa628e79638b19b1644b 340 SUPERFAMILY SSF53613 1 330 1.29E-74 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS08685 a04254831856fa628e79638b19b1644b 340 Pfam PF00294 pfkB family carbohydrate kinase 1 310 1.7E-31 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS26710 afce4dab3e729886c364692585c8fdf8 100 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 3 90 6.0E-17 T 11-11-2016 IPR016772 Uncharacterised conserved protein UCP020408 Gferi_RS26710 afce4dab3e729886c364692585c8fdf8 100 PIRSF PIRSF020408 1 100 3.1E-34 T 11-11-2016 IPR016772 Uncharacterised conserved protein UCP020408 Gferi_RS15820 06b6f7f35a349c8e7ffb30dd3d103166 178 SUPERFAMILY SSF55729 63 174 1.89E-21 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS15820 06b6f7f35a349c8e7ffb30dd3d103166 178 Pfam PF00583 Acetyltransferase (GNAT) family 73 152 4.2E-12 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS15820 06b6f7f35a349c8e7ffb30dd3d103166 178 Gene3D G3DSA:3.40.630.30 64 175 1.2E-22 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS07430 8150b2751a094b45c7ce7a99f091410a 205 Pfam PF13545 Crp-like helix-turn-helix domain 138 202 1.3E-6 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS07430 8150b2751a094b45c7ce7a99f091410a 205 SUPERFAMILY SSF51206 12 127 2.09E-24 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS07430 8150b2751a094b45c7ce7a99f091410a 205 SMART SM00100 1 117 4.8E-4 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS07430 8150b2751a094b45c7ce7a99f091410a 205 SUPERFAMILY SSF46785 135 202 8.85E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07430 8150b2751a094b45c7ce7a99f091410a 205 Gene3D G3DSA:2.60.120.10 12 126 1.0E-18 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS07430 8150b2751a094b45c7ce7a99f091410a 205 Pfam PF00027 Cyclic nucleotide-binding domain 18 105 1.8E-13 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS07430 8150b2751a094b45c7ce7a99f091410a 205 Gene3D G3DSA:1.10.10.10 136 203 9.8E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS16180 37cbed9afa27f3562991f863c6bbe917 491 Pfam PF13200 Putative glycosyl hydrolase domain 167 484 1.4E-112 T 11-11-2016 IPR025275 Putative glycosyl hydrolase domain DUF4015 Gferi_RS16180 37cbed9afa27f3562991f863c6bbe917 491 Pfam PF08239 Bacterial SH3 domain 73 130 1.9E-11 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type Gferi_RS16180 37cbed9afa27f3562991f863c6bbe917 491 SUPERFAMILY SSF51445 217 482 1.03E-7 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS16180 37cbed9afa27f3562991f863c6bbe917 491 SMART SM00287 64 135 8.3E-5 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type Gferi_RS18215 ffbf6fa0077273937285a141d8202760 166 Pfam PF00694 Aconitase C-terminal domain 47 105 1.3E-18 T 11-11-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS18215 ffbf6fa0077273937285a141d8202760 166 Gene3D G3DSA:3.20.19.10 6 153 5.4E-32 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS18215 ffbf6fa0077273937285a141d8202760 166 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 5 165 36.145 T 11-11-2016 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33 Gferi_RS18215 ffbf6fa0077273937285a141d8202760 166 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 7 163 6.6E-59 T 11-11-2016 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33 Gferi_RS18215 ffbf6fa0077273937285a141d8202760 166 SUPERFAMILY SSF52016 3 163 1.83E-44 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS12630 f3f0527bfd829b2ff4429bcd0e5d63fc 120 Pfam PF10941 Protein of unknown function DUF2620 2 117 5.1E-47 T 11-11-2016 IPR021238 Protein of unknown function DUF2620 Gferi_RS07505 1b9e9858b645009020f233c53336dc0f 525 Pfam PF03961 Protein of unknown function (DUF342) 70 521 1.0E-95 T 11-11-2016 IPR005646 Protein of unknown function DUF342 Gferi_RS14745 dc8141157bccb93d3034c4cf3f64b847 299 SMART SM00382 26 203 1.1E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS14745 dc8141157bccb93d3034c4cf3f64b847 299 Pfam PF00005 ABC transporter 17 154 1.2E-25 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14745 dc8141157bccb93d3034c4cf3f64b847 299 Gene3D G3DSA:3.40.50.300 1 230 7.1E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14745 dc8141157bccb93d3034c4cf3f64b847 299 SUPERFAMILY SSF52540 2 217 7.62E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13715 96bf7c6173398ee1bbd66e85b7d2136f 221 Gene3D G3DSA:3.30.240.20 75 147 1.5E-22 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS13715 96bf7c6173398ee1bbd66e85b7d2136f 221 Pfam PF04239 Protein of unknown function (DUF421) 82 195 1.2E-27 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS13715 96bf7c6173398ee1bbd66e85b7d2136f 221 Gene3D G3DSA:3.30.240.20 162 220 4.4E-15 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS12105 1bb4f9beab2e7ed03e64ec8f8140e116 177 Gene3D G3DSA:3.40.1360.20 1 120 2.2E-38 T 11-11-2016 Gferi_RS12105 1bb4f9beab2e7ed03e64ec8f8140e116 177 Pfam PF13331 Domain of unknown function (DUF4093) 89 172 6.3E-27 T 11-11-2016 IPR025156 Ribonuclease M5, C-terminal domain Gferi_RS12105 1bb4f9beab2e7ed03e64ec8f8140e116 177 TIGRFAM TIGR00334 5S_RNA_mat_M5: ribonuclease M5 2 169 8.4E-45 T 11-11-2016 IPR004466 Ribonuclease M5 GO:0043822 Gferi_RS12105 1bb4f9beab2e7ed03e64ec8f8140e116 177 SUPERFAMILY SSF110455 1 112 1.05E-32 T 11-11-2016 Gferi_RS12105 1bb4f9beab2e7ed03e64ec8f8140e116 177 SMART SM00493 3 76 5.8E-11 T 11-11-2016 IPR006171 Toprim domain Gferi_RS12105 1bb4f9beab2e7ed03e64ec8f8140e116 177 Hamap MF_01469 Ribonuclease M5 [rnmV]. 1 175 29.332 T 11-11-2016 IPR004466 Ribonuclease M5 GO:0043822 Gferi_RS12105 1bb4f9beab2e7ed03e64ec8f8140e116 177 Pfam PF01751 Toprim domain 4 74 1.5E-8 T 11-11-2016 IPR006171 Toprim domain Gferi_RS07020 2097657100f3afc4d5eb17ceabd4cb5e 257 Gene3D G3DSA:3.40.50.300 2 250 6.7E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07020 2097657100f3afc4d5eb17ceabd4cb5e 257 Pfam PF00005 ABC transporter 21 179 2.7E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS07020 2097657100f3afc4d5eb17ceabd4cb5e 257 SMART SM00382 28 228 7.6E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07020 2097657100f3afc4d5eb17ceabd4cb5e 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 229 251 7.8E-13 T 11-11-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Gferi_RS07020 2097657100f3afc4d5eb17ceabd4cb5e 257 SUPERFAMILY SSF52540 2 252 1.33E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24480 0a6b928cbc1aa6ac3d24f50d8f612c7b 77 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 1.2E-11 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Gferi_RS24480 0a6b928cbc1aa6ac3d24f50d8f612c7b 77 PRINTS PR01651 Protein-export SecG membrane protein signature 56 77 1.2E-11 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Gferi_RS24480 0a6b928cbc1aa6ac3d24f50d8f612c7b 77 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 1.2E-11 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Gferi_RS24480 0a6b928cbc1aa6ac3d24f50d8f612c7b 77 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 75 9.8E-22 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Gferi_RS24480 0a6b928cbc1aa6ac3d24f50d8f612c7b 77 Pfam PF03840 Preprotein translocase SecG subunit 5 75 3.0E-22 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Gferi_RS02865 75907e1c344101baa24c056a134f50eb 188 Pfam PF03358 NADPH-dependent FMN reductase 6 159 5.9E-21 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS02865 75907e1c344101baa24c056a134f50eb 188 SUPERFAMILY SSF52218 4 171 3.73E-36 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS02865 75907e1c344101baa24c056a134f50eb 188 Gene3D G3DSA:3.40.50.360 6 176 2.9E-39 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS06425 b4a6b1ed7ba2a17c3c20e4d273fc9e4a 331 Pfam PF03773 Predicted permease 19 324 2.1E-36 T 11-11-2016 IPR005524 Predicted permease DUF318 Gferi_RS18055 26415b2e11ff4eb55a27940a507adf04 331 Gene3D G3DSA:3.40.50.10440 11 183 1.1E-61 T 11-11-2016 Gferi_RS18055 26415b2e11ff4eb55a27940a507adf04 331 Gene3D G3DSA:3.30.1180.20 184 328 8.9E-56 T 11-11-2016 Gferi_RS18055 26415b2e11ff4eb55a27940a507adf04 331 SUPERFAMILY SSF82549 1 328 9.68E-115 T 11-11-2016 Gferi_RS18055 26415b2e11ff4eb55a27940a507adf04 331 Pfam PF02733 Dak1 domain 17 326 3.3E-118 T 11-11-2016 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 Gferi_RS00565 3e63adbb1df66bc34e0370be3a60f667 95 Pfam PF04324 BFD-like [2Fe-2S] binding domain 6 52 4.3E-13 T 11-11-2016 IPR007419 BFD-like [2Fe-2S]-binding domain Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 PIRSF PIRSF001529 1 425 1.8E-185 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 6.1E-175 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 42.694 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 Gene3D G3DSA:1.10.287.40 1 105 2.8E-27 T 11-11-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 4.1E-31 T 11-11-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 SUPERFAMILY SSF46589 1 113 2.51E-30 T 11-11-2016 IPR010978 tRNA-binding arm GO:0000166 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 Gene3D G3DSA:3.30.930.10 106 421 6.4E-142 T 11-11-2016 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 224 399 4.6E-35 T 11-11-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 1.8E-30 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 1.8E-30 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 1.8E-30 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 1.8E-30 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 1.8E-30 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Gferi_RS12925 611871d6b22aeac5baed1f45fdb63bfa 425 SUPERFAMILY SSF55681 118 421 1.99E-104 T 11-11-2016 Gferi_RS16185 c74e086f70c4620b48d365ef1f8c5e00 190 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 1 186 7.8E-73 T 11-11-2016 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 Gferi_RS16185 c74e086f70c4620b48d365ef1f8c5e00 190 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 38.939 T 11-11-2016 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 Gferi_RS16185 c74e086f70c4620b48d365ef1f8c5e00 190 Gene3D G3DSA:3.40.50.2020 1 185 5.1E-57 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS16185 c74e086f70c4620b48d365ef1f8c5e00 190 SUPERFAMILY SSF53271 1 179 1.75E-40 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS16185 c74e086f70c4620b48d365ef1f8c5e00 190 Pfam PF00156 Phosphoribosyl transferase domain 46 157 1.8E-10 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS09505 3c04f46884208f1897a91077e5561b71 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 455 1.2E-93 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS09505 3c04f46884208f1897a91077e5561b71 535 Gene3D G3DSA:3.90.76.10 38 215 6.5E-50 T 11-11-2016 Gferi_RS09505 3c04f46884208f1897a91077e5561b71 535 Gene3D G3DSA:3.10.105.10 287 506 3.6E-63 T 11-11-2016 Gferi_RS09505 3c04f46884208f1897a91077e5561b71 535 PIRSF PIRSF002741 1 529 2.4E-122 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS09505 3c04f46884208f1897a91077e5561b71 535 SUPERFAMILY SSF53850 28 529 1.99E-134 T 11-11-2016 Gferi_RS11405 e8691c90db32eb78e8c45408ffb55ce5 452 SUPERFAMILY SSF56954 133 448 4.84E-37 T 11-11-2016 Gferi_RS11405 e8691c90db32eb78e8c45408ffb55ce5 452 SUPERFAMILY SSF56954 4 71 4.84E-37 T 11-11-2016 Gferi_RS11405 e8691c90db32eb78e8c45408ffb55ce5 452 Gene3D G3DSA:1.20.1600.10 327 439 1.3E-5 T 11-11-2016 Gferi_RS11405 e8691c90db32eb78e8c45408ffb55ce5 452 Gene3D G3DSA:1.20.1600.10 143 316 1.6E-18 T 11-11-2016 Gferi_RS11405 e8691c90db32eb78e8c45408ffb55ce5 452 Pfam PF02321 Outer membrane efflux protein 143 262 9.2E-13 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Gferi_RS06940 cf1a7e532214bb87bee53d3ae44878b9 367 Gene3D G3DSA:3.40.50.2000 166 337 4.0E-13 T 11-11-2016 Gferi_RS06940 cf1a7e532214bb87bee53d3ae44878b9 367 TIGRFAM TIGR03590 PseG: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase 8 291 2.1E-70 T 11-11-2016 IPR020023 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase Gferi_RS06940 cf1a7e532214bb87bee53d3ae44878b9 367 SUPERFAMILY SSF53756 163 356 3.71E-13 T 11-11-2016 Gferi_RS06940 cf1a7e532214bb87bee53d3ae44878b9 367 Gene3D G3DSA:3.40.50.2000 17 109 2.4E-6 T 11-11-2016 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 TIGRFAM TIGR01499 folC: bifunctional protein FolC 22 427 2.2E-118 T 11-11-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 42 65 - T 11-11-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 Gene3D G3DSA:3.90.190.20 298 430 4.5E-40 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 SUPERFAMILY SSF53244 296 429 2.38E-29 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 Pfam PF08245 Mur ligase middle domain 44 270 4.4E-17 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 140 155 - T 11-11-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 SUPERFAMILY SSF53623 1 296 2.29E-91 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 PIRSF PIRSF001563 1 432 7.7E-148 T 11-11-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 Pfam PF02875 Mur ligase family, glutamate ligase domain 296 369 3.6E-9 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Gferi_RS04335 da13590adfaed81d3763805415f224dc 432 Gene3D G3DSA:3.40.1190.10 1 297 3.6E-97 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 Gferi_RS15390 9452c88e755e906d1270677d08943ff3 76 Pfam PF04023 FeoA domain 3 74 5.0E-19 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Gferi_RS15390 9452c88e755e906d1270677d08943ff3 76 SUPERFAMILY SSF50037 7 75 4.35E-22 T 11-11-2016 IPR008988 Transcriptional repressor, C-terminal Gferi_RS15390 9452c88e755e906d1270677d08943ff3 76 SMART SM00899 3 75 5.0E-25 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Gferi_RS23135 850e354171f50c046599d60728237955 295 SUPERFAMILY SSF103481 30 132 6.8E-17 T 11-11-2016 Gferi_RS23135 850e354171f50c046599d60728237955 295 Pfam PF00892 EamA-like transporter family 145 281 2.3E-32 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS23135 850e354171f50c046599d60728237955 295 Pfam PF00892 EamA-like transporter family 2 131 7.0E-28 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS23135 850e354171f50c046599d60728237955 295 SUPERFAMILY SSF103481 180 283 3.92E-16 T 11-11-2016 Gferi_RS25945 d8b8bacfb844b55ccca9335270382ad6 81 Pfam PF03698 Uncharacterised protein family (UPF0180) 2 79 8.6E-29 T 11-11-2016 IPR005370 Uncharacterised protein family UPF0180 Gferi_RS23155 82bc8b0d537b968045db5aac1594ac7b 137 Gene3D G3DSA:3.40.50.300 4 112 9.8E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23155 82bc8b0d537b968045db5aac1594ac7b 137 SUPERFAMILY SSF52540 4 118 8.7E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05885 6621d29c24abbb5e92b59e3fb31dafaf 155 Gene3D G3DSA:3.90.79.10 2 134 3.8E-23 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05885 6621d29c24abbb5e92b59e3fb31dafaf 155 Pfam PF00293 NUDIX domain 4 123 3.3E-14 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS05885 6621d29c24abbb5e92b59e3fb31dafaf 155 SUPERFAMILY SSF55811 3 122 4.06E-21 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS18565 4a8d38e48a43075942ef98e87d71b6ef 405 Pfam PF07905 Purine catabolism regulatory protein-like family 7 135 2.4E-23 T 11-11-2016 IPR012914 Purine catabolism PurC-like domain Gferi_RS18565 4a8d38e48a43075942ef98e87d71b6ef 405 Pfam PF13556 PucR C-terminal helix-turn-helix domain 324 373 2.0E-12 T 11-11-2016 IPR025736 PucR C-terminal helix-turn-helix domain Gferi_RS07075 c27f7e4e92e4ec53975a1d699fffd49b 249 SUPERFAMILY SSF53474 18 249 1.76E-31 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS07075 c27f7e4e92e4ec53975a1d699fffd49b 249 Gene3D G3DSA:3.40.50.1820 10 248 9.6E-52 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS07075 c27f7e4e92e4ec53975a1d699fffd49b 249 Pfam PF12146 Serine aminopeptidase, S33 20 227 8.7E-18 T 11-11-2016 IPR022742 Serine aminopeptidase, S33 Gferi_RS07075 c27f7e4e92e4ec53975a1d699fffd49b 249 PIRSF PIRSF017388 3 249 5.0E-68 T 11-11-2016 IPR012354 Esterase/lipase GO:0052689 Gferi_RS13430 daf24673e88d7b8a676d05e77a5ddad7 348 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 347 38.133 T 11-11-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Gferi_RS13430 daf24673e88d7b8a676d05e77a5ddad7 348 Gene3D G3DSA:3.40.50.1970 4 167 3.8E-65 T 11-11-2016 Gferi_RS13430 daf24673e88d7b8a676d05e77a5ddad7 348 SUPERFAMILY SSF56796 5 334 3.14E-102 T 11-11-2016 Gferi_RS13430 daf24673e88d7b8a676d05e77a5ddad7 348 Gene3D G3DSA:1.20.1090.10 169 338 8.7E-53 T 11-11-2016 Gferi_RS13430 daf24673e88d7b8a676d05e77a5ddad7 348 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 338 6.7E-112 T 11-11-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Gferi_RS13430 daf24673e88d7b8a676d05e77a5ddad7 348 PIRSF PIRSF001455 4 347 5.0E-107 T 11-11-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Gferi_RS13430 daf24673e88d7b8a676d05e77a5ddad7 348 Pfam PF01761 3-dehydroquinate synthase 63 320 3.6E-100 T 11-11-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 Gferi_RS03850 b8e57e1ef36b55d5f6449d34cef3a792 487 Pfam PF05598 Transposase domain (DUF772) 54 124 4.9E-11 T 11-11-2016 IPR008490 Transposase InsH, N-terminal Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 463 2.0E-187 T 11-11-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 Gene3D G3DSA:3.40.50.620 20 303 1.6E-115 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 SMART SM00840 353 416 9.9E-18 T 11-11-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 SUPERFAMILY SSF52374 2 312 2.63E-104 T 11-11-2016 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 464 40.464 T 11-11-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 Gene3D G3DSA:1.20.120.640 305 406 1.7E-24 T 11-11-2016 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 3.3E-30 T 11-11-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 3.3E-30 T 11-11-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 220 241 3.3E-30 T 11-11-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 189 207 3.3E-30 T 11-11-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 Pfam PF09190 DALR domain 353 411 8.6E-16 T 11-11-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 SUPERFAMILY SSF47323 314 462 5.76E-36 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS17265 62a043ad5c8d5b0be19a03eb5befa81b 464 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 19 311 8.0E-140 T 11-11-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 Gferi_RS01430 d18d93ca0b9e551b2a11d265423df95b 60 Gene3D G3DSA:3.30.60.20 6 40 1.7E-4 T 11-11-2016 Gferi_RS15935 6b9efafac4689b8ad7387544724e2b02 365 Pfam PF04346 Ethanolamine utilisation protein, EutH 3 352 4.4E-158 T 11-11-2016 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 Gferi_RS15935 6b9efafac4689b8ad7387544724e2b02 365 PIRSF PIRSF019466 1 365 3.1E-154 T 11-11-2016 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 Gferi_RS20415 9ba23e82eeb36e999fcd8f29b19db94f 294 Gene3D G3DSA:1.10.3720.10 17 291 6.7E-36 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20415 9ba23e82eeb36e999fcd8f29b19db94f 294 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 5 290 5.3E-92 T 11-11-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 Gferi_RS20415 9ba23e82eeb36e999fcd8f29b19db94f 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 289 2.2E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20415 9ba23e82eeb36e999fcd8f29b19db94f 294 SUPERFAMILY SSF161098 10 284 3.83E-35 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS26640 9c45a764d1278630b1d945dc82a07047 46 TIGRFAM TIGR03973 six_Cys_in_45: six-cysteine peptide SCIFF 2 44 1.3E-24 T 11-11-2016 IPR023975 Six-cysteine peptide SCIFF Gferi_RS26640 9c45a764d1278630b1d945dc82a07047 46 Pfam PF13165 Protein of unknown function (DUF4001) 2 45 4.3E-24 T 11-11-2016 IPR023975 Six-cysteine peptide SCIFF Gferi_RS14620 42c1b9d01ba4b3fa719e042bf33c6a04 611 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 7 455 2.0E-78 T 11-11-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Gferi_RS14620 42c1b9d01ba4b3fa719e042bf33c6a04 611 SUPERFAMILY SSF143968 316 456 1.57E-25 T 11-11-2016 Gferi_RS14620 42c1b9d01ba4b3fa719e042bf33c6a04 611 SUPERFAMILY SSF50475 2 315 3.1E-88 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS14620 42c1b9d01ba4b3fa719e042bf33c6a04 611 Gene3D G3DSA:3.40.1670.10 333 455 5.9E-17 T 11-11-2016 Gferi_RS14620 42c1b9d01ba4b3fa719e042bf33c6a04 611 Gene3D G3DSA:3.40.1670.10 500 575 1.5E-5 T 11-11-2016 Gferi_RS14620 42c1b9d01ba4b3fa719e042bf33c6a04 611 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 11 433 1.3E-114 T 11-11-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Gferi_RS14620 42c1b9d01ba4b3fa719e042bf33c6a04 611 SUPERFAMILY SSF143968 483 599 1.22E-8 T 11-11-2016 Gferi_RS08110 13c41170fd3aa82f6daae9fafcb8007f 442 PIRSF PIRSF006603 3 439 4.1E-50 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS08110 13c41170fd3aa82f6daae9fafcb8007f 442 TIGRFAM TIGR00797 matE: MATE efflux family protein 12 406 1.3E-69 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS08110 13c41170fd3aa82f6daae9fafcb8007f 442 Pfam PF01554 MatE 242 378 3.4E-14 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS08110 13c41170fd3aa82f6daae9fafcb8007f 442 Pfam PF01554 MatE 12 172 2.8E-22 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS20650 18c3f6506281501e9ffbe24409f6b00c 372 Gene3D G3DSA:3.90.550.10 304 347 5.2E-44 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20650 18c3f6506281501e9ffbe24409f6b00c 372 Gene3D G3DSA:3.90.550.10 14 263 5.2E-44 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20650 18c3f6506281501e9ffbe24409f6b00c 372 SUPERFAMILY SSF51161 289 353 1.57E-14 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS20650 18c3f6506281501e9ffbe24409f6b00c 372 SUPERFAMILY SSF53448 14 260 7.16E-51 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20650 18c3f6506281501e9ffbe24409f6b00c 372 SUPERFAMILY SSF53448 321 337 7.16E-51 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS20650 18c3f6506281501e9ffbe24409f6b00c 372 TIGRFAM TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit 4 370 1.8E-130 T 11-11-2016 IPR011832 Glucose-1-phosphate adenylyltransferase, GlgD subunit GO:0005978 Gferi_RS20650 18c3f6506281501e9ffbe24409f6b00c 372 Pfam PF00483 Nucleotidyl transferase 14 237 3.8E-17 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS03040 b735a60819976f352c6fa8c0f1acea38 118 TIGRFAM TIGR02839 spore_V_AE: stage V sporulation protein AE 3 115 2.0E-44 T 11-11-2016 IPR014204 Sporulation stage V, protein AE Gferi_RS03040 b735a60819976f352c6fa8c0f1acea38 118 Pfam PF03862 SpoVA protein 2 110 5.0E-36 T 11-11-2016 IPR005562 SpoVA Gferi_RS05400 1dda1b7a0cfee6e11b2ab6670cc1556c 496 Pfam PF02386 Cation transport protein 73 474 8.3E-51 T 11-11-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Gferi_RS05940 e8939cbd38002f007a1f096f4bcaf390 79 Pfam PF12773 Double zinc ribbon 32 74 9.1E-9 T 11-11-2016 IPR025874 Double zinc ribbon Gferi_RS07920 4a906583de4fbac71ff2031e156b5e2b 181 Gene3D G3DSA:1.10.10.10 6 143 1.3E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07920 4a906583de4fbac71ff2031e156b5e2b 181 Pfam PF12802 MarR family 34 94 8.2E-9 T 11-11-2016 Gferi_RS07920 4a906583de4fbac71ff2031e156b5e2b 181 SUPERFAMILY SSF46785 6 143 4.86E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07920 4a906583de4fbac71ff2031e156b5e2b 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 120 140 1.1E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS07920 4a906583de4fbac71ff2031e156b5e2b 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 1.1E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS07920 4a906583de4fbac71ff2031e156b5e2b 181 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 1.1E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS07920 4a906583de4fbac71ff2031e156b5e2b 181 SMART SM00347 30 130 1.1E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS12955 4500ad1ab89907dc1e1f7ca2d48c6b26 345 Pfam PF13303 Phosphotransferase system, EIIC 14 343 3.7E-112 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS01620 49c51710b8bcb9f286c5428fd7d3dacd 414 Pfam PF07670 Nucleoside recognition 53 146 3.0E-6 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS01620 49c51710b8bcb9f286c5428fd7d3dacd 414 TIGRFAM TIGR02871 spore_ylbJ: sporulation integral membrane protein YlbJ 18 382 1.4E-102 T 11-11-2016 IPR014226 Sporulation integral membrane protein YlbJ Gferi_RS16100 5187c7a2852b8534469ce2e63312730c 240 SUPERFAMILY SSF55326 10 96 2.62E-6 T 11-11-2016 Gferi_RS16100 5187c7a2852b8534469ce2e63312730c 240 Gene3D G3DSA:3.30.1330.10 7 122 2.4E-6 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS16100 5187c7a2852b8534469ce2e63312730c 240 Pfam PF00586 AIR synthase related protein, N-terminal domain 39 115 3.6E-6 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS14105 e725b352702c43862d3a74b136e5e316 259 Gene3D G3DSA:3.30.70.20 187 247 5.2E-13 T 11-11-2016 Gferi_RS14105 e725b352702c43862d3a74b136e5e316 259 Gene3D G3DSA:3.40.50.360 1 112 2.5E-11 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS14105 e725b352702c43862d3a74b136e5e316 259 SUPERFAMILY SSF54862 182 246 1.08E-15 T 11-11-2016 Gferi_RS14105 e725b352702c43862d3a74b136e5e316 259 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 192 203 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS14105 e725b352702c43862d3a74b136e5e316 259 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 220 231 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS14105 e725b352702c43862d3a74b136e5e316 259 Pfam PF12724 Flavodoxin domain 5 100 5.1E-7 T 11-11-2016 IPR026816 Flavodoxin domain Gferi_RS14105 e725b352702c43862d3a74b136e5e316 259 SUPERFAMILY SSF52218 1 145 8.98E-16 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS13450 66feb155076dcc74445e0e218cc03f4b 257 Gene3D G3DSA:3.20.20.70 6 254 2.7E-86 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS13450 66feb155076dcc74445e0e218cc03f4b 257 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 21 253 38.976 T 11-11-2016 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Gferi_RS13450 66feb155076dcc74445e0e218cc03f4b 257 Pfam PF01487 Type I 3-dehydroquinase 23 249 5.7E-73 T 11-11-2016 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Gferi_RS13450 66feb155076dcc74445e0e218cc03f4b 257 ProSitePatterns PS01028 Dehydroquinase class I active site. 118 148 - T 11-11-2016 IPR018508 3-dehydroquinate dehydratase, active site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Gferi_RS13450 66feb155076dcc74445e0e218cc03f4b 257 SUPERFAMILY SSF51569 6 254 3.59E-78 T 11-11-2016 Gferi_RS13450 66feb155076dcc74445e0e218cc03f4b 257 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 22 249 1.6E-74 T 11-11-2016 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 Gferi_RS21520 97ae8ec402b15dfd3c8e2fb5acaecd5f 381 Pfam PF07907 YibE/F-like protein 134 373 8.3E-82 T 11-11-2016 IPR012507 YibE/F-like Gferi_RS03440 942ae5c801681a8d191bae2ea7de4b9e 236 Pfam PF02811 PHP domain 6 217 2.5E-8 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS03440 942ae5c801681a8d191bae2ea7de4b9e 236 SMART SM00481 5 79 2.5E-8 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS03440 942ae5c801681a8d191bae2ea7de4b9e 236 Gene3D G3DSA:3.20.20.140 4 230 7.5E-54 T 11-11-2016 Gferi_RS03440 942ae5c801681a8d191bae2ea7de4b9e 236 SUPERFAMILY SSF89550 4 228 7.06E-54 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS12755 2dcd4b4534b619ddfa7cbe6f0b2e3014 403 SUPERFAMILY SSF53383 1 390 9.14E-91 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS12755 2dcd4b4534b619ddfa7cbe6f0b2e3014 403 Gene3D G3DSA:3.40.640.10 47 257 3.4E-45 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS12755 2dcd4b4534b619ddfa7cbe6f0b2e3014 403 Pfam PF00155 Aminotransferase class I and II 55 386 9.4E-40 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS12755 2dcd4b4534b619ddfa7cbe6f0b2e3014 403 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 390 1.9E-108 T 11-11-2016 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 Gferi_RS12755 2dcd4b4534b619ddfa7cbe6f0b2e3014 403 Gene3D G3DSA:3.90.1150.10 258 391 1.7E-37 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS09655 0b634f3f0b79805423005cf62700555b 800 SUPERFAMILY SSF51998 2 796 4.88E-170 T 11-11-2016 Gferi_RS09655 0b634f3f0b79805423005cf62700555b 800 ProSitePatterns PS00850 Glycine radical domain signature. 770 778 - T 11-11-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Gferi_RS09655 0b634f3f0b79805423005cf62700555b 800 Pfam PF02901 Pyruvate formate lyase-like 1 659 3.2E-151 T 11-11-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 Gferi_RS09655 0b634f3f0b79805423005cf62700555b 800 Pfam PF01228 Glycine radical 681 781 1.2E-30 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 Gferi_RS09655 0b634f3f0b79805423005cf62700555b 800 Gene3D G3DSA:3.20.70.20 1 796 2.0E-209 T 11-11-2016 Gferi_RS15955 ac9fcf3125ae9715e3c5b562d1cdf719 189 SMART SM00793 3 189 6.1E-10 T 11-11-2016 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 Gferi_RS15955 ac9fcf3125ae9715e3c5b562d1cdf719 189 Pfam PF04647 Accessory gene regulator B 8 180 2.0E-31 T 11-11-2016 IPR006741 Accessory gene regulator B GO:0008233|GO:0009372|GO:0009405|GO:0016021 Gferi_RS12405 7154b6a9b09c54a952dcb712863362fa 253 SUPERFAMILY SSF53697 4 211 3.34E-17 T 11-11-2016 Gferi_RS12405 7154b6a9b09c54a952dcb712863362fa 253 Gene3D G3DSA:3.40.50.10490 3 244 4.7E-64 T 11-11-2016 Gferi_RS12405 7154b6a9b09c54a952dcb712863362fa 253 Pfam PF13580 SIS domain 4 144 1.6E-44 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS08250 c64c71989bb84e6f9dd6a0759056bad7 425 Pfam PF00108 Thiolase, N-terminal domain 9 135 1.1E-10 T 11-11-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 Gferi_RS08250 c64c71989bb84e6f9dd6a0759056bad7 425 Gene3D G3DSA:3.40.47.10 30 123 3.5E-21 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS08250 c64c71989bb84e6f9dd6a0759056bad7 425 Gene3D G3DSA:3.40.47.10 234 264 3.5E-21 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS08250 c64c71989bb84e6f9dd6a0759056bad7 425 SUPERFAMILY SSF53901 7 130 6.45E-29 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS08250 c64c71989bb84e6f9dd6a0759056bad7 425 SUPERFAMILY SSF53901 242 395 6.45E-29 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS08250 c64c71989bb84e6f9dd6a0759056bad7 425 Gene3D G3DSA:3.40.47.10 300 402 4.9E-7 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS06620 369d61bd93ce2f1244c5df6845d0366d 328 Pfam PF03551 Transcriptional regulator PadR-like family 7 81 3.5E-11 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS06620 369d61bd93ce2f1244c5df6845d0366d 328 Pfam PF13788 Domain of unknown function (DUF4180) 211 318 4.3E-17 T 11-11-2016 IPR025438 Domain of unknown function DUF4180 Gferi_RS06620 369d61bd93ce2f1244c5df6845d0366d 328 Gene3D G3DSA:1.10.10.10 1 87 1.4E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06620 369d61bd93ce2f1244c5df6845d0366d 328 SUPERFAMILY SSF46785 3 175 5.02E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15840 38edf986229959bc2f87f1dfd20f57cf 141 Pfam PF10662 Ethanolamine utilisation - propanediol utilisation 1 139 2.9E-49 T 11-11-2016 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 Gferi_RS15840 38edf986229959bc2f87f1dfd20f57cf 141 SUPERFAMILY SSF52540 3 140 2.61E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15840 38edf986229959bc2f87f1dfd20f57cf 141 Gene3D G3DSA:3.40.50.300 3 140 1.1E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15840 38edf986229959bc2f87f1dfd20f57cf 141 PIRSF PIRSF036409 1 141 1.9E-47 T 11-11-2016 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 Gferi_RS15840 38edf986229959bc2f87f1dfd20f57cf 141 PRINTS PR00449 Transforming protein P21 ras signature 121 141 3.2E-5 T 11-11-2016 Gferi_RS15840 38edf986229959bc2f87f1dfd20f57cf 141 PRINTS PR00449 Transforming protein P21 ras signature 2 23 3.2E-5 T 11-11-2016 Gferi_RS15840 38edf986229959bc2f87f1dfd20f57cf 141 TIGRFAM TIGR02528 EutP: ethanolamine utilization protein, EutP 3 140 9.9E-47 T 11-11-2016 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 Gferi_RS08010 55b49c67bd16ea02216d0f0f64a99f80 182 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.1E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08010 55b49c67bd16ea02216d0f0f64a99f80 182 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.1E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08010 55b49c67bd16ea02216d0f0f64a99f80 182 Gene3D G3DSA:1.10.357.10 1 174 4.1E-23 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS08010 55b49c67bd16ea02216d0f0f64a99f80 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 55 3.7E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08010 55b49c67bd16ea02216d0f0f64a99f80 182 SUPERFAMILY SSF46689 2 67 2.1E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS08010 55b49c67bd16ea02216d0f0f64a99f80 182 Pfam PF14278 Transcriptional regulator C-terminal region 84 155 1.3E-16 T 11-11-2016 Gferi_RS25975 c25d41ada00093197a3af3728408f872 391 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 290 381 9.1E-10 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25975 c25d41ada00093197a3af3728408f872 391 SMART SM00387 285 383 3.1E-7 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25975 c25d41ada00093197a3af3728408f872 391 SUPERFAMILY SSF55874 250 381 8.38E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25975 c25d41ada00093197a3af3728408f872 391 Pfam PF07730 Histidine kinase 180 246 8.3E-17 T 11-11-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Gferi_RS25975 c25d41ada00093197a3af3728408f872 391 PIRSF PIRSF003169 1 387 2.0E-144 T 11-11-2016 IPR016381 Signal transduction histidine kinase, DegS GO:0000155|GO:0000160|GO:0004673 Gferi_RS25975 c25d41ada00093197a3af3728408f872 391 Gene3D G3DSA:3.30.565.10 283 385 3.5E-14 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS25975 c25d41ada00093197a3af3728408f872 391 Pfam PF05384 Sensor protein DegS 12 170 3.1E-54 T 11-11-2016 IPR008595 Sensor DegS GO:0007165|GO:0016301 Gferi_RS13625 29066beb768101ebb5f58acd54f39a18 338 Pfam PF16868 NMT1-like family 51 335 8.9E-93 T 11-11-2016 IPR011852 TRAP transporter solute receptor, TAXI family Gferi_RS13625 29066beb768101ebb5f58acd54f39a18 338 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 1 335 9.6E-111 T 11-11-2016 IPR011852 TRAP transporter solute receptor, TAXI family Gferi_RS13625 29066beb768101ebb5f58acd54f39a18 338 Gene3D G3DSA:3.40.190.10 135 266 1.5E-38 T 11-11-2016 Gferi_RS13625 29066beb768101ebb5f58acd54f39a18 338 Gene3D G3DSA:3.40.190.10 48 126 8.3E-53 T 11-11-2016 Gferi_RS13625 29066beb768101ebb5f58acd54f39a18 338 Gene3D G3DSA:3.40.190.10 267 336 8.3E-53 T 11-11-2016 Gferi_RS13625 29066beb768101ebb5f58acd54f39a18 338 SUPERFAMILY SSF53850 48 337 1.42E-76 T 11-11-2016 Gferi_RS20115 f62fc34d4f44d402c9c16b4c8f79468e 223 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 2 214 1.1E-80 T 11-11-2016 IPR004392 Hydrogenase accessory protein HypB GO:0006461|GO:0016151 Gferi_RS20115 f62fc34d4f44d402c9c16b4c8f79468e 223 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 33 193 3.2E-32 T 11-11-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Gferi_RS20115 f62fc34d4f44d402c9c16b4c8f79468e 223 SUPERFAMILY SSF52540 3 212 2.61E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20115 f62fc34d4f44d402c9c16b4c8f79468e 223 Gene3D G3DSA:3.40.50.300 30 213 2.9E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20115 f62fc34d4f44d402c9c16b4c8f79468e 223 PIRSF PIRSF005624 1 222 7.4E-87 T 11-11-2016 Gferi_RS19415 4c85e07f329d778dda4196691adef8c2 351 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 60 326 6.1E-53 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS22340 e98b78d59bd0811354ded97e8c42f462 360 Pfam PF13378 Enolase C-terminal domain-like 153 354 3.9E-57 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22340 e98b78d59bd0811354ded97e8c42f462 360 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 9 128 1.6E-7 T 11-11-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Gferi_RS22340 e98b78d59bd0811354ded97e8c42f462 360 SMART SM00922 147 244 5.1E-21 T 11-11-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Gferi_RS22340 e98b78d59bd0811354ded97e8c42f462 360 Gene3D G3DSA:3.30.390.10 1 131 4.7E-19 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22340 e98b78d59bd0811354ded97e8c42f462 360 Gene3D G3DSA:3.20.20.120 132 351 1.5E-64 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS22340 e98b78d59bd0811354ded97e8c42f462 360 SUPERFAMILY SSF54826 2 130 1.14E-15 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Gferi_RS22340 e98b78d59bd0811354ded97e8c42f462 360 SUPERFAMILY SSF51604 116 358 8.38E-62 T 11-11-2016 IPR029065 Enolase C-terminal domain-like Gferi_RS15495 88d2dbe970a0482b5460a75d9422649a 475 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 270 281 - T 11-11-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Gferi_RS15495 88d2dbe970a0482b5460a75d9422649a 475 Gene3D G3DSA:3.40.605.10 1 256 1.2E-107 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS15495 88d2dbe970a0482b5460a75d9422649a 475 Gene3D G3DSA:3.40.309.10 257 446 5.1E-68 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS15495 88d2dbe970a0482b5460a75d9422649a 475 SUPERFAMILY SSF53720 1 474 1.22E-177 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS15495 88d2dbe970a0482b5460a75d9422649a 475 Pfam PF00171 Aldehyde dehydrogenase family 7 470 9.1E-181 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS15495 88d2dbe970a0482b5460a75d9422649a 475 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 18 469 1.2E-205 T 11-11-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 Gferi_RS08990 4412ea2eb825f468bf7dc67a7868f9f4 136 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 6 123 7.5E-21 T 11-11-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 SMART SM00028 370 403 11.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 SMART SM00028 160 193 180.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 SMART SM00028 301 334 0.38 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 SMART SM00028 194 227 11.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 SMART SM00028 228 261 120.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 SMART SM00028 335 369 48.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 SMART SM00028 262 295 11.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 Pfam PF13181 Tetratricopeptide repeat 336 369 5.2E-4 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 SUPERFAMILY SSF48452 167 410 2.4E-31 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 Pfam PF13424 Tetratricopeptide repeat 267 325 2.3E-7 T 11-11-2016 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 Gene3D G3DSA:1.25.40.10 166 276 2.6E-21 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS02445 96f40f13e85f7811eac85112549ad485 427 Gene3D G3DSA:1.25.40.10 277 396 9.3E-22 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 SUPERFAMILY SSF53187 8 203 8.47E-53 T 11-11-2016 Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 SUPERFAMILY SSF53187 322 397 8.47E-53 T 11-11-2016 Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 Gene3D G3DSA:3.40.630.10 10 203 2.5E-52 T 11-11-2016 Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 Gene3D G3DSA:3.40.630.10 342 397 2.5E-52 T 11-11-2016 Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 Pfam PF01546 Peptidase family M20/M25/M40 80 396 6.0E-26 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 79 88 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 SUPERFAMILY SSF55031 194 297 1.13E-15 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 Gene3D G3DSA:3.30.70.360 204 293 1.0E-19 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS25355 4d5eac358d79fb9dd37416adbbd5b9db 402 Pfam PF07687 Peptidase dimerisation domain 192 293 1.1E-15 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS18305 4d5dad53f3f7ae90af5f233be16573ec 169 SUPERFAMILY SSF47148 34 168 3.01E-60 T 11-11-2016 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 Gferi_RS18305 4d5dad53f3f7ae90af5f233be16573ec 169 PIRSF PIRSF018505 1 169 4.8E-69 T 11-11-2016 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 Gferi_RS18305 4d5dad53f3f7ae90af5f233be16573ec 169 Pfam PF02287 Dehydratase small subunit 36 167 1.8E-63 T 11-11-2016 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 Gferi_RS13635 5f0db9b1aa057eede242d52dae03b872 653 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 40 644 9.6E-221 T 11-11-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein Gferi_RS13635 5f0db9b1aa057eede242d52dae03b872 653 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 134 569 3.4E-86 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS26050 73528346d50859e064173f3172b33365 177 SMART SM00877 4 81 1.6E-29 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26050 73528346d50859e064173f3172b33365 177 Pfam PF00936 BMC domain 5 81 4.9E-26 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS26050 73528346d50859e064173f3172b33365 177 SUPERFAMILY SSF143414 5 92 1.7E-27 T 11-11-2016 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 Gene3D G3DSA:3.30.70.100 5 90 5.2E-19 T 11-11-2016 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 Pfam PF00708 Acylphosphatase 4 90 7.2E-17 T 11-11-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 SUPERFAMILY SSF53067 625 728 7.77E-6 T 11-11-2016 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 SUPERFAMILY SSF55821 175 390 1.31E-49 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 8 744 1.3E-239 T 11-11-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 Gene3D G3DSA:3.90.870.10 202 378 1.6E-44 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 PIRSF PIRSF006256 2 752 8.7E-274 T 11-11-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 SUPERFAMILY SSF54975 3 90 1.83E-18 T 11-11-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 Pfam PF07503 HypF finger 158 190 7.4E-16 T 11-11-2016 IPR011125 Zinc finger, HypF-type GO:0008270 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 Pfam PF07503 HypF finger 108 141 4.8E-13 T 11-11-2016 IPR011125 Zinc finger, HypF-type GO:0008270 Gferi_RS07460 6e2259ab07a209848e6dada66736e047 752 Pfam PF01300 Telomere recombination 210 384 1.3E-55 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 Gferi_RS25660 0d3c0681bd67787f5342249da309035c 97 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 89 1.3E-12 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS25660 0d3c0681bd67787f5342249da309035c 97 Gene3D G3DSA:3.40.50.270 5 96 5.1E-25 T 11-11-2016 Gferi_RS25660 0d3c0681bd67787f5342249da309035c 97 SUPERFAMILY SSF52794 4 94 6.8E-18 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS02325 bcf7a571089b8abacb92ea2eeba23c8f 439 Pfam PF04055 Radical SAM superfamily 149 318 1.6E-30 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS02325 bcf7a571089b8abacb92ea2eeba23c8f 439 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 147 167 - T 11-11-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 Gferi_RS02325 bcf7a571089b8abacb92ea2eeba23c8f 439 SMART SM00729 143 360 1.7E-57 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS02325 bcf7a571089b8abacb92ea2eeba23c8f 439 Gene3D G3DSA:3.80.30.20 142 372 2.8E-79 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS02325 bcf7a571089b8abacb92ea2eeba23c8f 439 SUPERFAMILY SSF102114 123 368 4.84E-63 T 11-11-2016 Gferi_RS02325 bcf7a571089b8abacb92ea2eeba23c8f 439 Pfam PF00919 Uncharacterized protein family UPF0004 3 98 3.9E-26 T 11-11-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 Gferi_RS02325 bcf7a571089b8abacb92ea2eeba23c8f 439 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 430 1.0E-134 T 11-11-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 Gferi_RS02325 bcf7a571089b8abacb92ea2eeba23c8f 439 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 409 1.4E-137 T 11-11-2016 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 Gferi_RS05695 e09c08a24265289370abafcf2e9c8c1a 257 Gene3D G3DSA:3.40.50.720 7 202 5.2E-67 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05695 e09c08a24265289370abafcf2e9c8c1a 257 PIRSF PIRSF000094 2 257 1.4E-103 T 11-11-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 Gferi_RS05695 e09c08a24265289370abafcf2e9c8c1a 257 SUPERFAMILY SSF51735 6 255 3.35E-68 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05695 e09c08a24265289370abafcf2e9c8c1a 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 253 1.0E-86 T 11-11-2016 Gferi_RS05695 e09c08a24265289370abafcf2e9c8c1a 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.1E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS05695 e09c08a24265289370abafcf2e9c8c1a 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.1E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS05695 e09c08a24265289370abafcf2e9c8c1a 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.1E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS05695 e09c08a24265289370abafcf2e9c8c1a 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.1E-12 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 SUPERFAMILY SSF48179 286 365 1.36E-11 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 184 7.8E-55 T 11-11-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Pfam PF16113 Enoyl-CoA hydratase/isomerase 382 668 1.3E-46 T 11-11-2016 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 SUPERFAMILY SSF51735 5 186 4.32E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Gene3D G3DSA:1.10.1040.10 188 264 4.4E-15 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Gene3D G3DSA:1.10.1040.10 294 366 3.1E-12 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 SUPERFAMILY SSF52096 367 560 2.8E-65 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 SUPERFAMILY SSF52096 611 677 2.8E-65 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Gene3D G3DSA:3.40.50.720 3 187 2.8E-54 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Gene3D G3DSA:3.90.226.10 367 567 1.9E-60 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Gene3D G3DSA:1.10.12.10 622 678 1.5E-7 T 11-11-2016 IPR014748 Crontonase, C-terminal Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 184 208 - T 11-11-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 SUPERFAMILY SSF48179 186 269 5.53E-14 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 293 365 4.9E-8 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS09595 96105e848e8adb89544a6cd241f6ce8f 679 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 271 9.1E-15 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 Gferi_RS19000 56478d0ec52b7aa5c0a5027c4f163f89 316 Gene3D G3DSA:3.40.50.300 5 235 7.5E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19000 56478d0ec52b7aa5c0a5027c4f163f89 316 SUPERFAMILY SSF52540 8 230 1.7E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19000 56478d0ec52b7aa5c0a5027c4f163f89 316 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS19000 56478d0ec52b7aa5c0a5027c4f163f89 316 Pfam PF00005 ABC transporter 30 170 5.9E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS19000 56478d0ec52b7aa5c0a5027c4f163f89 316 SMART SM00382 39 220 8.8E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS04880 1bebe4d99b797f0f0e21df818df5e461 107 Gene3D G3DSA:2.60.120.10 12 100 1.6E-12 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS04880 1bebe4d99b797f0f0e21df818df5e461 107 SUPERFAMILY SSF51182 13 102 1.09E-17 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS12345 dab3c6ff9374f08ffbb792b8267ce0bc 270 Pfam PF02675 S-adenosylmethionine decarboxylase 43 175 2.6E-31 T 11-11-2016 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Gferi_RS12345 dab3c6ff9374f08ffbb792b8267ce0bc 270 SUPERFAMILY SSF56276 118 180 2.04E-25 T 11-11-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Gferi_RS12345 dab3c6ff9374f08ffbb792b8267ce0bc 270 SUPERFAMILY SSF56276 48 89 2.04E-25 T 11-11-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Gferi_RS12345 dab3c6ff9374f08ffbb792b8267ce0bc 270 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 270 170.63 T 11-11-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Gferi_RS12345 dab3c6ff9374f08ffbb792b8267ce0bc 270 Gene3D G3DSA:3.60.90.10 40 192 7.6E-49 T 11-11-2016 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Gferi_RS12345 dab3c6ff9374f08ffbb792b8267ce0bc 270 PIRSF PIRSF001356 3 269 1.3E-146 T 11-11-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Gferi_RS12345 dab3c6ff9374f08ffbb792b8267ce0bc 270 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 8 267 2.9E-148 T 11-11-2016 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 Gene3D G3DSA:3.40.50.2300 3 132 1.3E-32 T 11-11-2016 Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 SUPERFAMILY SSF52172 4 148 6.26E-32 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 Pfam PF00990 Diguanylate cyclase, GGDEF domain 155 305 7.5E-34 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 Pfam PF00072 Response regulator receiver domain 5 113 4.7E-24 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 Gene3D G3DSA:3.30.70.270 155 309 5.6E-39 T 11-11-2016 Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 SMART SM00267 142 311 2.5E-34 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 SMART SM00448 3 118 1.2E-24 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 151 308 4.5E-36 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS09370 95e8788d5c7f0081fefa1ab813256afb 363 SUPERFAMILY SSF55073 158 309 6.59E-35 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS24285 3e18b230157e7ef461fec4a346196341 261 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 2 246 2.9E-61 T 11-11-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 Gferi_RS24285 3e18b230157e7ef461fec4a346196341 261 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 2 246 6.3E-78 T 11-11-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 Pfam PF00912 Transglycosylase 74 243 4.5E-57 T 11-11-2016 IPR001264 Glycosyl transferase, family 51 Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 Pfam PF00905 Penicillin binding protein transpeptidase domain 523 800 5.5E-36 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 87 805 9.4E-164 T 11-11-2016 Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 Gene3D G3DSA:3.40.710.10 280 373 3.2E-114 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 Gene3D G3DSA:3.40.710.10 515 868 3.2E-114 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 SUPERFAMILY SSF53955 63 301 3.37E-64 T 11-11-2016 IPR023346 Lysozyme-like domain Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 SUPERFAMILY SSF56601 262 280 8.35E-103 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 SUPERFAMILY SSF56601 311 369 8.35E-103 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 SUPERFAMILY SSF56601 515 879 8.35E-103 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS03030 6125ffcdcdb5ad93415e07bd11587236 959 Gene3D G3DSA:1.10.3810.10 83 279 5.7E-65 T 11-11-2016 Gferi_RS06825 d33e9367d1dabe2ea5dfc96e34ea5ccb 114 SUPERFAMILY SSF47226 3 108 9.03E-15 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS06825 d33e9367d1dabe2ea5dfc96e34ea5ccb 114 Gene3D G3DSA:1.20.120.160 3 107 1.1E-13 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS06825 d33e9367d1dabe2ea5dfc96e34ea5ccb 114 Pfam PF01627 Hpt domain 27 104 1.0E-5 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 Gferi_RS03280 5a894de7f01d7b80821fb32e92434bb6 181 Pfam PF13302 Acetyltransferase (GNAT) domain 3 147 7.8E-14 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS03280 5a894de7f01d7b80821fb32e92434bb6 181 SUPERFAMILY SSF55729 2 165 2.79E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS03280 5a894de7f01d7b80821fb32e92434bb6 181 Gene3D G3DSA:3.40.630.30 2 157 3.6E-28 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS09460 ffa0cd73bb419ab3ac9c2231673deeb2 157 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 147 8.7E-29 T 11-11-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Gferi_RS09460 ffa0cd73bb419ab3ac9c2231673deeb2 157 Gene3D G3DSA:3.60.21.10 2 153 5.1E-40 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS09460 ffa0cd73bb419ab3ac9c2231673deeb2 157 SUPERFAMILY SSF56300 2 154 8.51E-42 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS09460 ffa0cd73bb419ab3ac9c2231673deeb2 157 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 2 152 4.7E-31 T 11-11-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Gferi_RS09855 7a1857f35a614e07007087b0dade8dba 97 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 3 95 3.0E-24 T 11-11-2016 IPR020483 Uncharacterised protein family YgbA Gferi_RS09855 7a1857f35a614e07007087b0dade8dba 97 Pfam PF11756 Nitrous oxide-stimulated promoter 3 96 1.2E-37 T 11-11-2016 IPR020483 Uncharacterised protein family YgbA Gferi_RS12745 8978fe0536408c0ff03b58f1a28824be 474 Gene3D G3DSA:1.10.390.10 337 472 4.6E-16 T 11-11-2016 Gferi_RS12745 8978fe0536408c0ff03b58f1a28824be 474 SUPERFAMILY SSF55486 261 471 2.93E-37 T 11-11-2016 Gferi_RS12745 8978fe0536408c0ff03b58f1a28824be 474 Pfam PF01433 Peptidase family M1 185 371 1.2E-12 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 Gferi_RS26890 ebdd91b52a9a4f8911933b2a9c674355 144 Pfam PF01475 Ferric uptake regulator family 14 136 2.8E-38 T 11-11-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Gferi_RS26890 ebdd91b52a9a4f8911933b2a9c674355 144 SUPERFAMILY SSF46785 7 141 1.12E-41 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26890 ebdd91b52a9a4f8911933b2a9c674355 144 Gene3D G3DSA:1.10.10.10 5 87 8.6E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01340 535330c22550f21820ca0a969a9c5a3e 432 Gene3D G3DSA:3.40.50.300 184 429 2.0E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01340 535330c22550f21820ca0a969a9c5a3e 432 Pfam PF00437 Type II/IV secretion system protein 88 327 7.4E-14 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Gferi_RS01340 535330c22550f21820ca0a969a9c5a3e 432 SUPERFAMILY SSF52540 63 325 2.61E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01340 535330c22550f21820ca0a969a9c5a3e 432 Gene3D G3DSA:3.30.450.90 75 167 2.6E-6 T 11-11-2016 Gferi_RS10805 f90dbe9fc0867b0112587739a97370bd 370 SUPERFAMILY SSF55073 212 369 7.22E-36 T 11-11-2016 IPR029787 Nucleotide cyclase Gferi_RS10805 f90dbe9fc0867b0112587739a97370bd 370 Pfam PF00990 Diguanylate cyclase, GGDEF domain 208 364 3.7E-33 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS10805 f90dbe9fc0867b0112587739a97370bd 370 Gene3D G3DSA:3.30.70.270 209 369 3.6E-39 T 11-11-2016 Gferi_RS10805 f90dbe9fc0867b0112587739a97370bd 370 SMART SM00267 196 370 1.1E-22 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS10805 f90dbe9fc0867b0112587739a97370bd 370 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 208 368 2.2E-34 T 11-11-2016 IPR000160 GGDEF domain Gferi_RS10615 6447c7ed4ddc71cc93ccc9be72faa0be 247 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 220 1.6E-56 T 11-11-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 Gferi_RS10615 6447c7ed4ddc71cc93ccc9be72faa0be 247 SUPERFAMILY SSF53067 108 218 2.4E-18 T 11-11-2016 Gferi_RS10615 6447c7ed4ddc71cc93ccc9be72faa0be 247 Gene3D G3DSA:3.30.420.40 1 119 7.5E-42 T 11-11-2016 Gferi_RS10615 6447c7ed4ddc71cc93ccc9be72faa0be 247 Gene3D G3DSA:3.30.420.40 120 186 5.3E-10 T 11-11-2016 Gferi_RS10615 6447c7ed4ddc71cc93ccc9be72faa0be 247 Pfam PF00814 Glycoprotease family 32 202 1.8E-32 T 11-11-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 Gferi_RS10615 6447c7ed4ddc71cc93ccc9be72faa0be 247 SUPERFAMILY SSF53067 1 102 1.21E-28 T 11-11-2016 Gferi_RS15465 7db64b7065704b686e9a4cdd80c0c2b5 491 Pfam PF03616 Sodium/glutamate symporter 28 369 1.2E-11 T 11-11-2016 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 Gferi_RS14325 b57e93a890b3c6d95dfb5398e5bbbf57 464 SUPERFAMILY SSF53474 365 461 1.52E-5 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14325 b57e93a890b3c6d95dfb5398e5bbbf57 464 SUPERFAMILY SSF53474 246 304 1.52E-5 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14325 b57e93a890b3c6d95dfb5398e5bbbf57 464 Gene3D G3DSA:3.40.50.1820 248 303 1.5E-4 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14325 b57e93a890b3c6d95dfb5398e5bbbf57 464 Gene3D G3DSA:3.40.50.1820 377 453 1.5E-4 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 Pfam PF13802 Galactose mutarotase-like 57 121 1.1E-10 T 11-11-2016 IPR025887 Glycoside hydrolase family 31, N-terminal domain Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 SUPERFAMILY SSF51445 368 531 1.08E-84 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 SUPERFAMILY SSF51445 152 320 1.08E-84 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 SUPERFAMILY SSF74650 47 146 1.69E-13 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 SUPERFAMILY SSF51011 541 618 2.37E-6 T 11-11-2016 Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 ProSitePatterns PS00129 Glycosyl hydrolases family 31 active site. 312 319 - T 11-11-2016 IPR030458 Glycosyl hydrolases family 31, active site Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 Pfam PF17137 Domain of unknown function (DUF5110) 646 696 7.2E-8 T 11-11-2016 IPR033403 Domain of unknown function DUF5110 Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 Pfam PF01055 Glycosyl hydrolases family 31 142 620 3.4E-124 T 11-11-2016 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 Gferi_RS20870 cd2c093f7431350b29ad11e37a6407c8 717 Gene3D G3DSA:3.20.20.70 181 320 8.7E-6 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS26680 19f229f8205203574ead9f1822393c42 149 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 4.5E-60 T 11-11-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 Gferi_RS26680 19f229f8205203574ead9f1822393c42 149 Gene3D G3DSA:3.50.80.10 1 145 9.3E-62 T 11-11-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain Gferi_RS26680 19f229f8205203574ead9f1822393c42 149 SUPERFAMILY SSF69500 1 144 4.71E-59 T 11-11-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain Gferi_RS26680 19f229f8205203574ead9f1822393c42 149 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 36.279 T 11-11-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 Gferi_RS26680 19f229f8205203574ead9f1822393c42 149 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 2.9E-56 T 11-11-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 Gferi_RS26840 842445a3bfdb72f9c9c3213ee6881f9f 179 Pfam PF05239 PRC-barrel domain 90 148 5.1E-10 T 11-11-2016 IPR027275 PRC-barrel domain Gferi_RS26840 842445a3bfdb72f9c9c3213ee6881f9f 179 Pfam PF05239 PRC-barrel domain 4 70 1.8E-5 T 11-11-2016 IPR027275 PRC-barrel domain Gferi_RS26840 842445a3bfdb72f9c9c3213ee6881f9f 179 SUPERFAMILY SSF50346 89 156 1.13E-11 T 11-11-2016 IPR011033 PRC-barrel-like Gferi_RS26840 842445a3bfdb72f9c9c3213ee6881f9f 179 Gene3D G3DSA:2.30.30.240 4 69 6.7E-8 T 11-11-2016 Gferi_RS26840 842445a3bfdb72f9c9c3213ee6881f9f 179 Gene3D G3DSA:2.30.30.240 93 149 5.2E-9 T 11-11-2016 Gferi_RS26840 842445a3bfdb72f9c9c3213ee6881f9f 179 SUPERFAMILY SSF50346 2 70 5.97E-9 T 11-11-2016 IPR011033 PRC-barrel-like Gferi_RS12960 222f1920fdbd9e57cd679caf3abaf643 303 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 1 300 7.9E-99 T 11-11-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Gferi_RS12960 222f1920fdbd9e57cd679caf3abaf643 303 SUPERFAMILY SSF142754 5 300 5.62E-106 T 11-11-2016 Gferi_RS12960 222f1920fdbd9e57cd679caf3abaf643 303 Pfam PF02445 Quinolinate synthetase A protein 9 300 8.8E-111 T 11-11-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 Gferi_RS20700 5afbb50ccced611df4ef34508e56d6bd 157 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 15 157 5.3E-49 T 11-11-2016 Gferi_RS20700 5afbb50ccced611df4ef34508e56d6bd 157 Gene3D G3DSA:3.40.30.10 78 156 2.2E-14 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS20700 5afbb50ccced611df4ef34508e56d6bd 157 PIRSF PIRSF000216 2 157 5.1E-55 T 11-11-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS20700 5afbb50ccced611df4ef34508e56d6bd 157 SUPERFAMILY SSF52833 6 157 4.81E-50 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS15555 a14210048109cc14d56a867d5e7d4e79 166 SUPERFAMILY SSF55781 10 159 1.09E-41 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS15555 a14210048109cc14d56a867d5e7d4e79 166 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 99 116 - T 11-11-2016 IPR000614 Free Met sulfoxide reductase conserved site Gferi_RS15555 a14210048109cc14d56a867d5e7d4e79 166 Pfam PF13185 GAF domain 48 154 1.5E-10 T 11-11-2016 IPR003018 GAF domain GO:0005515 Gferi_RS15555 a14210048109cc14d56a867d5e7d4e79 166 Gene3D G3DSA:3.30.450.40 8 158 2.2E-49 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 SMART SM00304 222 274 5.3E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 SMART SM00283 303 578 3.7E-60 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 SUPERFAMILY SSF103190 87 189 1.41E-8 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 369 577 3.6E-39 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 Pfam PF00672 HAMP domain 203 270 2.8E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 SUPERFAMILY SSF58104 242 276 7.06E-66 T 11-11-2016 Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 SUPERFAMILY SSF58104 309 578 7.06E-66 T 11-11-2016 Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 Gene3D G3DSA:1.10.287.950 317 535 9.1E-46 T 11-11-2016 Gferi_RS20910 c8a48de26a4f2c2245010d3473539e79 579 Pfam PF17202 Single cache domain 3 83 197 4.6E-26 T 11-11-2016 IPR033463 Single cache domain 3 Gferi_RS06665 ff47c53434ca6e073c6e3921f605b996 466 Pfam PF01098 Cell cycle protein 79 430 2.4E-34 T 11-11-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 296 1.0E-31 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 SUPERFAMILY SSF51905 2 322 7.13E-42 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 Gene3D G3DSA:3.50.50.60 240 323 1.3E-14 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 2.5E-23 T 11-11-2016 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 296 2.5E-23 T 11-11-2016 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.5E-23 T 11-11-2016 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 2.5E-23 T 11-11-2016 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 246 262 2.5E-23 T 11-11-2016 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 Gene3D G3DSA:3.40.50.720 2 166 1.2E-30 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 1.2E-19 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 248 269 1.2E-19 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 284 302 1.2E-19 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 4 26 1.2E-19 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 151 175 1.2E-19 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 1.2E-19 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 204 220 1.2E-19 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS13035 67210b4c7bf48cffa949b67fa825a6d9 420 Gene3D G3DSA:3.50.50.60 167 239 1.4E-10 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05125 08a6faf353dcd32d0b020f911736a4b3 141 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 118 4.5E-23 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Gferi_RS05125 08a6faf353dcd32d0b020f911736a4b3 141 TIGRFAM TIGR00494 crcB: protein CrcB 7 122 1.3E-31 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Gferi_RS05125 08a6faf353dcd32d0b020f911736a4b3 141 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 123 18.272 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 Gferi_RS05125 08a6faf353dcd32d0b020f911736a4b3 141 SUPERFAMILY SSF103473 6 121 8.76E-5 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS09600 db9f7884dc20afcd8788b38cf7427f5b 277 Gene3D G3DSA:1.10.287.950 114 275 2.4E-32 T 11-11-2016 Gferi_RS09600 db9f7884dc20afcd8788b38cf7427f5b 277 SMART SM00283 95 277 0.0076 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS09600 db9f7884dc20afcd8788b38cf7427f5b 277 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 157 272 9.7E-25 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS09600 db9f7884dc20afcd8788b38cf7427f5b 277 SUPERFAMILY SSF58104 110 274 4.05E-34 T 11-11-2016 Gferi_RS09600 db9f7884dc20afcd8788b38cf7427f5b 277 SUPERFAMILY SSF103190 12 114 9.02E-7 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS06750 c2cad5354e041f49e6ead2e3aa640c4d 119 Gene3D G3DSA:1.10.10.10 2 75 2.2E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06750 c2cad5354e041f49e6ead2e3aa640c4d 119 Pfam PF03965 Penicillinase repressor 8 116 1.7E-19 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS06750 c2cad5354e041f49e6ead2e3aa640c4d 119 PIRSF PIRSF019455 1 119 1.7E-22 T 11-11-2016 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 Gferi_RS06750 c2cad5354e041f49e6ead2e3aa640c4d 119 SUPERFAMILY SSF46785 3 117 5.46E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04435 ef15e4516365589eeb32fd8cac406a47 426 Gene3D G3DSA:1.20.1250.20 222 407 1.8E-11 T 11-11-2016 Gferi_RS04435 ef15e4516365589eeb32fd8cac406a47 426 Gene3D G3DSA:1.20.1250.20 6 192 5.5E-13 T 11-11-2016 Gferi_RS04435 ef15e4516365589eeb32fd8cac406a47 426 Pfam PF05977 Transmembrane secretion effector 6 401 3.6E-21 T 11-11-2016 IPR010290 Transmembrane secretion effector Gferi_RS04435 ef15e4516365589eeb32fd8cac406a47 426 SUPERFAMILY SSF103473 6 413 3.92E-32 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS01695 90c3779742eb8e5d6fcb49abf71766f3 233 Pfam PF04298 Putative neutral zinc metallopeptidase 15 228 3.2E-87 T 11-11-2016 IPR007395 Putative neutral zinc metallopeptidase Gferi_RS16720 cd4e803f31d86d6d44df48ee49a99305 90 SUPERFAMILY SSF160537 1 86 7.98E-35 T 11-11-2016 IPR007170 Stage V sporulation protein G GO:0030435 Gferi_RS16720 cd4e803f31d86d6d44df48ee49a99305 90 Hamap MF_00819 Putative septation protein SpoVG [spoVG]. 1 89 27.874 T 11-11-2016 IPR007170 Stage V sporulation protein G GO:0030435 Gferi_RS16720 cd4e803f31d86d6d44df48ee49a99305 90 Gene3D G3DSA:3.30.1120.40 1 82 1.5E-39 T 11-11-2016 IPR007170 Stage V sporulation protein G GO:0030435 Gferi_RS16720 cd4e803f31d86d6d44df48ee49a99305 90 Pfam PF04026 SpoVG 1 82 1.7E-38 T 11-11-2016 IPR007170 Stage V sporulation protein G GO:0030435 Gferi_RS08575 6a37b3eb184494eac39ae5370477cc54 251 Gene3D G3DSA:3.40.50.300 1 220 1.4E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08575 6a37b3eb184494eac39ae5370477cc54 251 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS08575 6a37b3eb184494eac39ae5370477cc54 251 SMART SM00382 30 211 8.8E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS08575 6a37b3eb184494eac39ae5370477cc54 251 Pfam PF00005 ABC transporter 23 161 4.7E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS08575 6a37b3eb184494eac39ae5370477cc54 251 SUPERFAMILY SSF52540 1 221 1.57E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00205 2e9f8152c00aa963f829dc5d8835f01e 228 Gene3D G3DSA:3.90.550.10 4 111 3.3E-15 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS00205 2e9f8152c00aa963f829dc5d8835f01e 228 SUPERFAMILY SSF53448 5 214 4.3E-32 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS00205 2e9f8152c00aa963f829dc5d8835f01e 228 Pfam PF00535 Glycosyl transferase family 2 6 126 1.1E-20 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS00870 edce176da8881d42f6aecf6baf8bb77e 379 SUPERFAMILY SSF52540 181 374 6.55E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00870 edce176da8881d42f6aecf6baf8bb77e 379 Gene3D G3DSA:1.20.120.140 118 195 8.3E-9 T 11-11-2016 Gferi_RS00870 edce176da8881d42f6aecf6baf8bb77e 379 Gene3D G3DSA:3.40.50.300 196 375 1.8E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS00870 edce176da8881d42f6aecf6baf8bb77e 379 SMART SM00962 184 375 9.1E-71 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS00870 edce176da8881d42f6aecf6baf8bb77e 379 Pfam PF00448 SRP54-type protein, GTPase domain 185 374 3.8E-47 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Gferi_RS00870 edce176da8881d42f6aecf6baf8bb77e 379 SMART SM00382 183 348 9.2E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS00870 edce176da8881d42f6aecf6baf8bb77e 379 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 271 7.1E-65 T 11-11-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 Gferi_RS08860 fdeef77b295c8e90cec99a9ff17fe04b 274 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 149 169 - T 11-11-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site Gferi_RS08860 fdeef77b295c8e90cec99a9ff17fe04b 274 Gene3D G3DSA:3.60.110.10 2 271 2.9E-95 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS08860 fdeef77b295c8e90cec99a9ff17fe04b 274 Pfam PF00795 Carbon-nitrogen hydrolase 5 256 1.3E-65 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS08860 fdeef77b295c8e90cec99a9ff17fe04b 274 SUPERFAMILY SSF56317 1 264 8.76E-84 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 Gferi_RS26005 2829ec08a7e658b1d8a877dcaade58ea 408 Pfam PF06580 Histidine kinase 205 283 8.9E-26 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS26005 2829ec08a7e658b1d8a877dcaade58ea 408 Gene3D G3DSA:3.30.565.10 255 407 7.6E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26005 2829ec08a7e658b1d8a877dcaade58ea 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 3.4E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26005 2829ec08a7e658b1d8a877dcaade58ea 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 349 3.4E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26005 2829ec08a7e658b1d8a877dcaade58ea 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 406 3.4E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26005 2829ec08a7e658b1d8a877dcaade58ea 408 SUPERFAMILY SSF55874 258 406 4.98E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26005 2829ec08a7e658b1d8a877dcaade58ea 408 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 306 407 4.2E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26005 2829ec08a7e658b1d8a877dcaade58ea 408 Pfam PF10114 Sensory domain found in PocR 9 171 6.4E-55 T 11-11-2016 IPR018771 PocR domain Gferi_RS05755 71f542a8ac296e23bc41332c0a580d1b 293 PIRSF PIRSF006483 1 286 5.4E-59 T 11-11-2016 IPR003740 Uncharacterised membrane protein YitT Gferi_RS05755 71f542a8ac296e23bc41332c0a580d1b 293 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 225 279 2.5E-11 T 11-11-2016 IPR019264 Domain of unknown function DUF2179 Gferi_RS05755 71f542a8ac296e23bc41332c0a580d1b 293 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 13 219 1.2E-46 T 11-11-2016 IPR003740 Uncharacterised membrane protein YitT Gferi_RS03365 3dfa64086a38be9abb390d2fbc3e10ff 518 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 18 508 1.7E-117 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS07935 c4397732557c5f0b1147679a521b10e0 302 Gene3D G3DSA:3.90.1200.10 123 253 1.2E-15 T 11-11-2016 Gferi_RS07935 c4397732557c5f0b1147679a521b10e0 302 SUPERFAMILY SSF56112 22 261 5.54E-24 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS07935 c4397732557c5f0b1147679a521b10e0 302 Pfam PF01636 Phosphotransferase enzyme family 24 264 4.5E-21 T 11-11-2016 IPR002575 Aminoglycoside phosphotransferase Gferi_RS23815 1c418eb8572c53f01e379153435fc620 96 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 7.3E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS23815 1c418eb8572c53f01e379153435fc620 96 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 7.3E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS23815 1c418eb8572c53f01e379153435fc620 96 SUPERFAMILY SSF46689 6 78 7.7E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS23815 1c418eb8572c53f01e379153435fc620 96 Gene3D G3DSA:1.10.10.60 9 45 2.1E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS23815 1c418eb8572c53f01e379153435fc620 96 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 2.4E-14 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS23815 1c418eb8572c53f01e379153435fc620 96 Gene3D G3DSA:1.10.10.60 46 74 9.7E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS01140 6bc8712e66a3c095c3a9ebc4ecdd4c66 420 Pfam PF00817 impB/mucB/samB family 12 165 1.2E-36 T 11-11-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Gferi_RS01140 6bc8712e66a3c095c3a9ebc4ecdd4c66 420 Gene3D G3DSA:1.10.150.20 177 247 5.1E-17 T 11-11-2016 Gferi_RS01140 6bc8712e66a3c095c3a9ebc4ecdd4c66 420 Gene3D G3DSA:3.30.70.270 77 174 2.0E-31 T 11-11-2016 Gferi_RS01140 6bc8712e66a3c095c3a9ebc4ecdd4c66 420 Pfam PF11799 impB/mucB/samB family C-terminal domain 254 359 2.3E-15 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Gferi_RS01140 6bc8712e66a3c095c3a9ebc4ecdd4c66 420 SUPERFAMILY SSF56672 6 244 3.2E-61 T 11-11-2016 Gferi_RS01140 6bc8712e66a3c095c3a9ebc4ecdd4c66 420 SUPERFAMILY SSF100879 253 350 1.88E-18 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Gferi_RS01140 6bc8712e66a3c095c3a9ebc4ecdd4c66 420 Hamap MF_01113 DNA polymerase IV [dinB]. 5 362 28.581 T 11-11-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 Gferi_RS01140 6bc8712e66a3c095c3a9ebc4ecdd4c66 420 Gene3D G3DSA:3.30.1490.100 254 360 5.0E-19 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Gferi_RS03830 8738c59e7884bb94fbdb9b9356cb8c09 589 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 137 538 8.2E-58 T 11-11-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 Gferi_RS03830 8738c59e7884bb94fbdb9b9356cb8c09 589 Gene3D G3DSA:3.40.50.300 79 207 1.4E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03830 8738c59e7884bb94fbdb9b9356cb8c09 589 Gene3D G3DSA:3.40.50.300 349 548 1.4E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03830 8738c59e7884bb94fbdb9b9356cb8c09 589 SUPERFAMILY SSF52540 85 549 1.32E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13250 31d980ee1d3997b304972219c02f31dc 69 SMART SM00363 11 69 0.0038 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS13250 31d980ee1d3997b304972219c02f31dc 69 SUPERFAMILY SSF55174 2 67 2.62E-19 T 11-11-2016 Gferi_RS13250 31d980ee1d3997b304972219c02f31dc 69 Pfam PF13275 S4 domain 4 67 5.7E-26 T 11-11-2016 Gferi_RS13250 31d980ee1d3997b304972219c02f31dc 69 Gene3D G3DSA:3.10.290.10 1 68 8.7E-27 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS20665 b167db85a314c768bcccfa61d9626bbb 408 SUPERFAMILY SSF50156 291 351 7.49E-11 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS20665 b167db85a314c768bcccfa61d9626bbb 408 Gene3D G3DSA:2.30.42.10 291 340 2.8E-9 T 11-11-2016 IPR001478 PDZ domain GO:0005515 Gferi_RS09245 0c82a8fbea932b56cadae50236b0c032 298 Pfam PF00892 EamA-like transporter family 8 136 2.9E-17 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS09245 0c82a8fbea932b56cadae50236b0c032 298 Pfam PF00892 EamA-like transporter family 145 276 4.2E-17 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS09245 0c82a8fbea932b56cadae50236b0c032 298 SUPERFAMILY SSF103481 187 277 2.35E-12 T 11-11-2016 Gferi_RS09245 0c82a8fbea932b56cadae50236b0c032 298 SUPERFAMILY SSF103481 40 139 1.44E-12 T 11-11-2016 Gferi_RS22080 076f54092628ee407fb9e1ef7ed64dd8 483 SUPERFAMILY SSF54373 223 313 1.31E-5 T 11-11-2016 Gferi_RS22080 076f54092628ee407fb9e1ef7ed64dd8 483 Pfam PF01266 FAD dependent oxidoreductase 6 359 8.3E-59 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Gferi_RS22080 076f54092628ee407fb9e1ef7ed64dd8 483 SUPERFAMILY SSF51905 5 219 3.88E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22080 076f54092628ee407fb9e1ef7ed64dd8 483 SUPERFAMILY SSF51905 333 383 3.88E-43 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22080 076f54092628ee407fb9e1ef7ed64dd8 483 Gene3D G3DSA:3.50.50.60 137 218 2.5E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22080 076f54092628ee407fb9e1ef7ed64dd8 483 Gene3D G3DSA:3.50.50.60 321 377 2.5E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22080 076f54092628ee407fb9e1ef7ed64dd8 483 Gene3D G3DSA:3.50.50.60 1 85 2.5E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22080 076f54092628ee407fb9e1ef7ed64dd8 483 Pfam PF04324 BFD-like [2Fe-2S] binding domain 404 458 4.7E-11 T 11-11-2016 IPR007419 BFD-like [2Fe-2S]-binding domain Gferi_RS01545 b51225d7152ae707f75093df9858240a 359 Gene3D G3DSA:3.80.30.20 9 204 8.4E-28 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS01545 b51225d7152ae707f75093df9858240a 359 SUPERFAMILY SSF102114 10 271 2.35E-50 T 11-11-2016 Gferi_RS01545 b51225d7152ae707f75093df9858240a 359 SMART SM00729 7 226 9.7E-31 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS01545 b51225d7152ae707f75093df9858240a 359 Pfam PF16199 Radical_SAM C-terminal domain 187 273 1.4E-17 T 11-11-2016 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 Gferi_RS01545 b51225d7152ae707f75093df9858240a 359 Pfam PF04055 Radical SAM superfamily 12 179 2.7E-15 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS13535 6cd892cf5eb38bca0e82384fa45930f0 342 SUPERFAMILY SSF50891 181 295 3.38E-10 T 11-11-2016 IPR029000 Cyclophilin-like domain Gferi_RS13535 6cd892cf5eb38bca0e82384fa45930f0 342 SMART SM00797 25 306 2.5E-136 T 11-11-2016 IPR003778 Carboxyltransferase domain, subdomain A and B Gferi_RS13535 6cd892cf5eb38bca0e82384fa45930f0 342 Pfam PF02626 Allophanate hydrolase subunit 2 26 289 5.3E-93 T 11-11-2016 IPR003778 Carboxyltransferase domain, subdomain A and B Gferi_RS13535 6cd892cf5eb38bca0e82384fa45930f0 342 Gene3D G3DSA:2.40.100.10 192 303 9.0E-9 T 11-11-2016 IPR029000 Cyclophilin-like domain Gferi_RS13535 6cd892cf5eb38bca0e82384fa45930f0 342 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 5 315 7.0E-101 T 11-11-2016 IPR003778 Carboxyltransferase domain, subdomain A and B Gferi_RS15395 726e4f9e0c1fd92f0c5e550b8eb828cb 685 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 156 7.1E-13 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 Gferi_RS15395 726e4f9e0c1fd92f0c5e550b8eb828cb 685 Pfam PF07670 Nucleoside recognition 352 447 1.6E-16 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS15395 726e4f9e0c1fd92f0c5e550b8eb828cb 685 Pfam PF07670 Nucleoside recognition 514 652 3.8E-26 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS15395 726e4f9e0c1fd92f0c5e550b8eb828cb 685 SUPERFAMILY SSF52540 5 199 6.33E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15395 726e4f9e0c1fd92f0c5e550b8eb828cb 685 Pfam PF07664 Ferrous iron transport protein B C terminus 457 509 9.6E-24 T 11-11-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Gferi_RS15395 726e4f9e0c1fd92f0c5e550b8eb828cb 685 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 9 648 5.8E-188 T 11-11-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 Gferi_RS15395 726e4f9e0c1fd92f0c5e550b8eb828cb 685 Gene3D G3DSA:3.40.50.300 4 172 4.6E-39 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS15395 726e4f9e0c1fd92f0c5e550b8eb828cb 685 Pfam PF02421 Ferrous iron transport protein B 4 157 1.1E-69 T 11-11-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 Gferi_RS14705 8ff971c86d18d55ca8f5191dbde97f0c 426 PIRSF PIRSF006066 1 426 2.4E-154 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS14705 8ff971c86d18d55ca8f5191dbde97f0c 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 420 1.7E-131 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS14705 8ff971c86d18d55ca8f5191dbde97f0c 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 415 7.2E-115 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS17395 0221d17202a18c23775709dcd1152f11 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 203 1.3E-88 T 11-11-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17395 0221d17202a18c23775709dcd1152f11 209 Gene3D G3DSA:4.10.960.10 77 156 2.7E-31 T 11-11-2016 Gferi_RS17395 0221d17202a18c23775709dcd1152f11 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 206 40.407 T 11-11-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17395 0221d17202a18c23775709dcd1152f11 209 Pfam PF00297 Ribosomal protein L3 98 181 8.2E-15 T 11-11-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS17395 0221d17202a18c23775709dcd1152f11 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 11-11-2016 IPR019926 Ribosomal protein L3, conserved site Gferi_RS17395 0221d17202a18c23775709dcd1152f11 209 SUPERFAMILY SSF50447 1 207 9.71E-82 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS17395 0221d17202a18c23775709dcd1152f11 209 Gene3D G3DSA:2.40.30.10 3 32 3.2E-16 T 11-11-2016 Gferi_RS17395 0221d17202a18c23775709dcd1152f11 209 Gene3D G3DSA:2.40.30.10 157 208 3.2E-16 T 11-11-2016 Gferi_RS21150 77f71e529e67a92d3fd0315ca14ba6ad 166 SUPERFAMILY SSF52402 3 114 1.1E-16 T 11-11-2016 Gferi_RS21150 77f71e529e67a92d3fd0315ca14ba6ad 166 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 20 69 4.7E-5 T 11-11-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 Gferi_RS21150 77f71e529e67a92d3fd0315ca14ba6ad 166 Gene3D G3DSA:3.40.50.620 3 84 5.3E-11 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS22475 1ffe75cf840f33be0c7afbf27c3732d4 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 2.0E-10 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS22475 1ffe75cf840f33be0c7afbf27c3732d4 200 Gene3D G3DSA:1.10.357.10 4 175 2.5E-27 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS22475 1ffe75cf840f33be0c7afbf27c3732d4 200 SUPERFAMILY SSF46689 5 88 1.13E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS22475 1ffe75cf840f33be0c7afbf27c3732d4 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.4E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS22475 1ffe75cf840f33be0c7afbf27c3732d4 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.4E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS06550 c11fe0d6c1bbf250fefe29ffb9128c1a 343 Gene3D G3DSA:3.90.1150.10 248 341 9.3E-25 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS06550 c11fe0d6c1bbf250fefe29ffb9128c1a 343 Pfam PF01212 Beta-eliminating lyase 5 287 6.1E-98 T 11-11-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Gferi_RS06550 c11fe0d6c1bbf250fefe29ffb9128c1a 343 SUPERFAMILY SSF53383 3 340 6.05E-117 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS06550 c11fe0d6c1bbf250fefe29ffb9128c1a 343 PIRSF PIRSF017617 1 343 7.9E-134 T 11-11-2016 IPR023603 Threonine aldolase Gferi_RS06550 c11fe0d6c1bbf250fefe29ffb9128c1a 343 Gene3D G3DSA:3.40.640.10 2 246 4.2E-92 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS15705 eaa95a7aba937825d30f24eb2760eec9 418 SUPERFAMILY SSF103473 17 406 3.92E-55 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS15705 eaa95a7aba937825d30f24eb2760eec9 418 Pfam PF07690 Major Facilitator Superfamily 19 280 5.2E-35 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS15705 eaa95a7aba937825d30f24eb2760eec9 418 Gene3D G3DSA:1.20.1250.20 18 203 1.8E-29 T 11-11-2016 Gferi_RS15705 eaa95a7aba937825d30f24eb2760eec9 418 Gene3D G3DSA:1.20.1250.20 204 413 5.1E-19 T 11-11-2016 Gferi_RS23150 f9df7d310347eccb201c0f96f792189d 348 Pfam PF04055 Radical SAM superfamily 108 269 1.0E-17 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS23150 f9df7d310347eccb201c0f96f792189d 348 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 4 343 72.442 T 11-11-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS23150 f9df7d310347eccb201c0f96f792189d 348 Pfam PF13394 4Fe-4S single cluster domain 112 209 1.3E-6 T 11-11-2016 Gferi_RS23150 f9df7d310347eccb201c0f96f792189d 348 Gene3D G3DSA:3.20.20.70 98 331 1.0E-13 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS23150 f9df7d310347eccb201c0f96f792189d 348 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 9 346 2.1E-132 T 11-11-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS23150 f9df7d310347eccb201c0f96f792189d 348 PIRSF PIRSF006004 3 348 2.7E-135 T 11-11-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 Gferi_RS23150 f9df7d310347eccb201c0f96f792189d 348 SUPERFAMILY SSF102114 93 308 1.57E-14 T 11-11-2016 Gferi_RS06880 084262b24aadf3863a85bd9ffe156d05 309 Gene3D G3DSA:3.90.550.10 5 245 1.8E-8 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06880 084262b24aadf3863a85bd9ffe156d05 309 SUPERFAMILY SSF53448 4 275 2.08E-18 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS06880 084262b24aadf3863a85bd9ffe156d05 309 Pfam PF03407 Nucleotide-diphospho-sugar transferase 34 186 1.0E-5 T 11-11-2016 IPR005069 Nucleotide-diphospho-sugar transferase Gferi_RS01670 c656e5fa4ce1fe0c4ff10034a9271496 217 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 11-11-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Gferi_RS01670 c656e5fa4ce1fe0c4ff10034a9271496 217 Pfam PF00834 Ribulose-phosphate 3 epimerase family 3 200 4.7E-89 T 11-11-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Gferi_RS01670 c656e5fa4ce1fe0c4ff10034a9271496 217 PIRSF PIRSF001461 1 217 1.6E-99 T 11-11-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Gferi_RS01670 c656e5fa4ce1fe0c4ff10034a9271496 217 Gene3D G3DSA:3.20.20.70 2 215 9.3E-97 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS01670 c656e5fa4ce1fe0c4ff10034a9271496 217 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 3 212 3.4E-94 T 11-11-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Gferi_RS01670 c656e5fa4ce1fe0c4ff10034a9271496 217 SUPERFAMILY SSF51366 1 214 2.89E-79 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Gferi_RS01670 c656e5fa4ce1fe0c4ff10034a9271496 217 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 133 155 - T 11-11-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 Pfam PF00551 Formyl transferase 2 168 1.1E-42 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 Gene3D G3DSA:3.40.50.170 1 197 1.5E-68 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 297 34.51 T 11-11-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 127 150 - T 11-11-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 Pfam PF02911 Formyl transferase, C-terminal domain 199 294 1.3E-27 T 11-11-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 SUPERFAMILY SSF53328 1 199 3.14E-65 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 294 6.7E-96 T 11-11-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 Gene3D G3DSA:3.10.25.10 201 303 2.8E-34 T 11-11-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS01705 5105f2d5e596307c7c332bb89b6b9bd7 304 SUPERFAMILY SSF50486 199 297 6.59E-30 T 11-11-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 Gferi_RS06490 79d2274567d5d67f34159985232aa26d 343 Pfam PF06081 Aromatic acid exporter family member 1 4 143 5.4E-27 T 11-11-2016 IPR010343 Aromatic acid exporter family member 1 Gferi_RS11240 c79991554b812a1033a7387866c28a5f 655 Pfam PF01496 V-type ATPase 116kDa subunit family 87 399 1.4E-23 T 11-11-2016 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11240 c79991554b812a1033a7387866c28a5f 655 Pfam PF01496 V-type ATPase 116kDa subunit family 546 650 3.9E-11 T 11-11-2016 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS04550 14b5080a65774c3d32fe3a8e1715ef49 478 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 6 470 4.3E-77 T 11-11-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 Gene3D G3DSA:3.90.120.10 460 496 6.2E-36 T 11-11-2016 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 Gene3D G3DSA:3.90.120.10 541 559 6.2E-36 T 11-11-2016 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 Gene3D G3DSA:3.90.120.10 184 308 6.2E-36 T 11-11-2016 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 Gene3D G3DSA:3.40.50.150 162 183 2.6E-41 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 Gene3D G3DSA:3.40.50.150 5 127 2.6E-41 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 5 21 9.1E-10 T 11-11-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 180 193 9.1E-10 T 11-11-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 112 126 9.1E-10 T 11-11-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 8 495 5.1E-35 T 11-11-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 SUPERFAMILY SSF53335 288 306 1.5E-57 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 SUPERFAMILY SSF53335 473 499 1.5E-57 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 SUPERFAMILY SSF53335 3 241 1.5E-57 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 SUPERFAMILY SSF53335 542 566 1.5E-57 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 66 78 - T 11-11-2016 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-5334118 Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 Pfam PF00145 C-5 cytosine-specific DNA methylase 447 495 2.4E-6 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23555 7ba2f965f3e68d6937300c50d7f5b2cc 578 Pfam PF00145 C-5 cytosine-specific DNA methylase 6 192 3.1E-32 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS07300 bf52b84fbfa9ac261dcfcc7f0f41e5e5 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 421 4.0E-125 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS07300 bf52b84fbfa9ac261dcfcc7f0f41e5e5 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 414 1.2E-108 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS07300 bf52b84fbfa9ac261dcfcc7f0f41e5e5 426 PIRSF PIRSF006066 1 426 2.9E-127 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS21045 c1821aea26addc8559f7e4b0d8ceb9cd 273 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 224 235 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS21045 c1821aea26addc8559f7e4b0d8ceb9cd 273 Pfam PF12801 4Fe-4S binding domain 51 89 1.7E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS21045 c1821aea26addc8559f7e4b0d8ceb9cd 273 Pfam PF12801 4Fe-4S binding domain 146 185 5.9E-4 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS21045 c1821aea26addc8559f7e4b0d8ceb9cd 273 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 197 208 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS21045 c1821aea26addc8559f7e4b0d8ceb9cd 273 SUPERFAMILY SSF54862 59 80 4.65E-15 T 11-11-2016 Gferi_RS21045 c1821aea26addc8559f7e4b0d8ceb9cd 273 SUPERFAMILY SSF54862 135 240 4.65E-15 T 11-11-2016 Gferi_RS21045 c1821aea26addc8559f7e4b0d8ceb9cd 273 Gene3D G3DSA:3.30.70.20 166 241 6.1E-13 T 11-11-2016 Gferi_RS00215 00dc1e8b55935e319fb9ba4d2acfe52b 373 Gene3D G3DSA:3.40.50.10240 170 241 9.9E-11 T 11-11-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS00215 00dc1e8b55935e319fb9ba4d2acfe52b 373 Pfam PF12555 Thiamine pyrophosphokinase C terminal 320 368 3.6E-11 T 11-11-2016 IPR022215 Thiamine pyrophosphokinase C-terminal Gferi_RS00215 00dc1e8b55935e319fb9ba4d2acfe52b 373 SUPERFAMILY SSF63999 136 322 4.05E-29 T 11-11-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Gferi_RS21310 d1790f71713021b2b687d0018e0ed2b4 98 Pfam PF13310 Virulence protein RhuM family 1 67 6.5E-20 T 11-11-2016 IPR011204 Virulence protein RhuM-like Gferi_RS09625 37336d0bcf307f414af19c3aa9e923f6 438 Pfam PF03600 Citrate transporter 15 373 1.8E-28 T 11-11-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Gferi_RS04350 74efaff7591407af5cc4eda9aa4bdc52 176 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 47 69 - T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Gferi_RS04350 74efaff7591407af5cc4eda9aa4bdc52 176 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 168 5.7E-32 T 11-11-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 Gferi_RS04350 74efaff7591407af5cc4eda9aa4bdc52 176 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 69 9.9E-18 T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Gferi_RS04350 74efaff7591407af5cc4eda9aa4bdc52 176 PIRSF PIRSF000847 1 175 6.5E-42 T 11-11-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 Gferi_RS02085 bd40f16b9b95dde22573cdbacc7c9363 182 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 11 175 1.4E-69 T 11-11-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 Gferi_RS02085 bd40f16b9b95dde22573cdbacc7c9363 182 Pfam PF00156 Phosphoribosyl transferase domain 11 162 8.5E-25 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 Gferi_RS02085 bd40f16b9b95dde22573cdbacc7c9363 182 Gene3D G3DSA:3.40.50.2020 3 182 1.1E-81 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS02085 bd40f16b9b95dde22573cdbacc7c9363 182 SUPERFAMILY SSF53271 3 181 4.71E-58 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like Gferi_RS03995 eadfc9a27e84f8d7f82112bc1e6aaf48 586 SUPERFAMILY SSF102114 173 398 1.44E-39 T 11-11-2016 Gferi_RS03995 eadfc9a27e84f8d7f82112bc1e6aaf48 586 SMART SM00729 178 390 1.3E-26 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS03995 eadfc9a27e84f8d7f82112bc1e6aaf48 586 Gene3D G3DSA:3.80.30.20 179 399 3.0E-32 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS03995 eadfc9a27e84f8d7f82112bc1e6aaf48 586 Pfam PF04055 Radical SAM superfamily 183 335 3.0E-13 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS03995 eadfc9a27e84f8d7f82112bc1e6aaf48 586 Pfam PF13311 Protein of unknown function (DUF4080) 373 567 1.5E-50 T 11-11-2016 IPR025288 Domain of unknown function DUF4080 Gferi_RS03995 eadfc9a27e84f8d7f82112bc1e6aaf48 586 Pfam PF02310 B12 binding domain 40 124 3.4E-16 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS20235 23ac25cbc168654b91cece41a6417c26 165 Pfam PF06177 QueT transporter 19 162 5.2E-24 T 11-11-2016 IPR010387 Queuosine precursor transporter QueT GO:0005886 Gferi_RS23520 dc22d5ad1153868cc5b44ad2789188fb 159 SUPERFAMILY SSF54060 92 143 1.88E-6 T 11-11-2016 Gferi_RS23520 dc22d5ad1153868cc5b44ad2789188fb 159 Pfam PF13392 HNH endonuclease 98 139 4.0E-9 T 11-11-2016 IPR003615 HNH nuclease Gferi_RS15055 81fd2940a323f6c63ae4998a284ec19d 452 Gene3D G3DSA:3.20.70.20 1 452 2.2E-215 T 11-11-2016 Gferi_RS15055 81fd2940a323f6c63ae4998a284ec19d 452 SUPERFAMILY SSF51998 2 447 2.38E-180 T 11-11-2016 Gferi_RS15055 81fd2940a323f6c63ae4998a284ec19d 452 Hamap MF_01221 UPF0210 protein . 2 452 52.817 T 11-11-2016 IPR007841 Uncharacterised protein family UPF0210 Gferi_RS15055 81fd2940a323f6c63ae4998a284ec19d 452 Pfam PF05167 Uncharacterised ACR (DUF711) 13 416 9.8E-182 T 11-11-2016 IPR007841 Uncharacterised protein family UPF0210 Gferi_RS09775 92ce8af473a416512436939c7b1ae01a 187 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 38 164 1.2E-15 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS07345 e47da74e911addd6889b0b6720589bce 195 Gene3D G3DSA:1.10.357.10 2 158 2.7E-30 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS07345 e47da74e911addd6889b0b6720589bce 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 54 1.4E-13 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07345 e47da74e911addd6889b0b6720589bce 195 SUPERFAMILY SSF46689 2 63 2.89E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07345 e47da74e911addd6889b0b6720589bce 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 1.6E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS07345 e47da74e911addd6889b0b6720589bce 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 1.6E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS23805 702db735946690bd492b908f97a200c1 166 SUPERFAMILY SSF55136 6 136 1.67E-6 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS23805 702db735946690bd492b908f97a200c1 166 Gene3D G3DSA:3.20.80.10 6 95 2.4E-7 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS23805 702db735946690bd492b908f97a200c1 166 Pfam PF14526 Integron-associated effector binding protein 10 114 1.7E-6 T 11-11-2016 IPR029441 Integron-associated effector binding protein Gferi_RS10050 ce1d5c760a711e720c3c1ae4ed7d1998 266 Pfam PF08543 Phosphomethylpyrimidine kinase 11 254 2.8E-101 T 11-11-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 Gferi_RS10050 ce1d5c760a711e720c3c1ae4ed7d1998 266 Gene3D G3DSA:3.40.1190.20 1 256 2.7E-108 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS10050 ce1d5c760a711e720c3c1ae4ed7d1998 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 4 256 7.2E-109 T 11-11-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10050 ce1d5c760a711e720c3c1ae4ed7d1998 266 SUPERFAMILY SSF53613 1 259 4.05E-85 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS08280 aa1b0da2ddc3b63bc8c81bb4812303c7 116 Gene3D G3DSA:3.40.50.1240 41 90 2.2E-6 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS08280 aa1b0da2ddc3b63bc8c81bb4812303c7 116 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 44 106 7.6E-5 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 Gferi_RS08280 aa1b0da2ddc3b63bc8c81bb4812303c7 116 SUPERFAMILY SSF53254 1 84 4.28E-7 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS06005 dbd1323f227a02fce141310685f68e42 75 Pfam PF09851 Short C-terminal domain 49 74 7.5E-10 T 11-11-2016 IPR018649 SHOCT domain Gferi_RS14680 e08d9c5880d44bffa7d70b7966e98070 661 Gene3D G3DSA:3.40.190.100 496 616 5.2E-26 T 11-11-2016 Gferi_RS14680 e08d9c5880d44bffa7d70b7966e98070 661 SMART SM00283 136 397 3.9E-46 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS14680 e08d9c5880d44bffa7d70b7966e98070 661 Gene3D G3DSA:1.10.287.950 151 367 6.5E-46 T 11-11-2016 Gferi_RS14680 e08d9c5880d44bffa7d70b7966e98070 661 SUPERFAMILY SSF53850 411 652 5.97E-50 T 11-11-2016 Gferi_RS14680 e08d9c5880d44bffa7d70b7966e98070 661 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 413 652 5.1E-44 T 11-11-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 Gferi_RS14680 e08d9c5880d44bffa7d70b7966e98070 661 SUPERFAMILY SSF58104 123 410 1.83E-57 T 11-11-2016 Gferi_RS14680 e08d9c5880d44bffa7d70b7966e98070 661 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 201 396 8.1E-42 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS12035 adedb4b9101b8165924dec2f0ddd8d75 90 Pfam PF02583 Metal-sensitive transcriptional repressor 7 86 2.9E-24 T 11-11-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Gferi_RS26215 4540e343234f31e4eef67595ce8b3b37 182 Gene3D G3DSA:3.30.565.10 9 105 1.5E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26215 4540e343234f31e4eef67595ce8b3b37 182 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 8 100 7.7E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26215 4540e343234f31e4eef67595ce8b3b37 182 SUPERFAMILY SSF55874 8 133 2.23E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26215 4540e343234f31e4eef67595ce8b3b37 182 SMART SM00387 1 106 3.7E-7 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS26215 4540e343234f31e4eef67595ce8b3b37 182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 36 50 2.4E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26215 4540e343234f31e4eef67595ce8b3b37 182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 66 84 2.4E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS26215 4540e343234f31e4eef67595ce8b3b37 182 PRINTS PR00344 Bacterial sensor protein C-terminal signature 54 64 2.4E-5 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 Gene3D G3DSA:1.10.287.130 248 313 9.4E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 SUPERFAMILY SSF55785 119 235 1.03E-6 T 11-11-2016 IPR000014 PAS domain Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 SUPERFAMILY SSF55874 308 462 2.88E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 4.0E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 4.0E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 4.0E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 4.0E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 SMART SM00388 252 317 1.6E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 Gene3D G3DSA:3.30.450.20 127 247 1.6E-10 T 11-11-2016 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 128 243 1.8E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 Gene3D G3DSA:3.30.565.10 323 461 9.1E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 313 1.5E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 SMART SM00387 358 464 8.8E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 SUPERFAMILY SSF47384 244 314 1.04E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS05935 3a11f7b1e15c03c4c3fcfb657eb75875 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 463 1.2E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS18160 bb6b14087faffc7c168ad7422f893ac5 417 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 40 406 6.8E-75 T 11-11-2016 IPR010327 FldB/FldC dehydratase alpha/beta subunit Gferi_RS07290 1750720d515b7452d503666e6f6fe8b9 163 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 29 155 8.8E-25 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS20125 fa717ee4e184775d610e2caf781fa298 246 Pfam PF00902 Sec-independent protein translocase protein (TatC) 11 216 6.8E-59 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Gferi_RS20125 fa717ee4e184775d610e2caf781fa298 246 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 238 16.966 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Gferi_RS20125 fa717ee4e184775d610e2caf781fa298 246 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 98 124 5.4E-27 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Gferi_RS20125 fa717ee4e184775d610e2caf781fa298 246 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 149 177 5.4E-27 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Gferi_RS20125 fa717ee4e184775d610e2caf781fa298 246 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 80 98 5.4E-27 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Gferi_RS20125 fa717ee4e184775d610e2caf781fa298 246 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 5.4E-27 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Gferi_RS20125 fa717ee4e184775d610e2caf781fa298 246 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 221 6.9E-54 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 Gferi_RS12605 e24bf9e267128d015436b3d81c86b20b 391 Gene3D G3DSA:3.20.20.10 113 268 3.9E-7 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS12605 e24bf9e267128d015436b3d81c86b20b 391 SUPERFAMILY SSF51419 34 271 1.79E-20 T 11-11-2016 IPR029066 PLP-binding barrel Gferi_RS12605 e24bf9e267128d015436b3d81c86b20b 391 Pfam PF01168 Alanine racemase, N-terminal domain 34 265 1.1E-16 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Gferi_RS20865 e104d68141c2954484d5930518675753 273 SUPERFAMILY SSF161098 3 273 5.49E-65 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20865 e104d68141c2954484d5930518675753 273 Gene3D G3DSA:1.10.3720.10 9 261 6.9E-57 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20865 e104d68141c2954484d5930518675753 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 267 2.3E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS23215 f34530eba50beae47bd90f845735c821 112 Gene3D G3DSA:3.30.1360.20 12 108 1.4E-28 T 11-11-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 Gferi_RS23215 f34530eba50beae47bd90f845735c821 112 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 16 109 20.915 T 11-11-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 Gferi_RS23215 f34530eba50beae47bd90f845735c821 112 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 18 107 4.1E-27 T 11-11-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 Gferi_RS23215 f34530eba50beae47bd90f845735c821 112 SUPERFAMILY SSF55248 16 108 1.31E-28 T 11-11-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 Gferi_RS17995 af0ee775984c372324ec05a4615ab8c0 414 Pfam PF03594 Benzoate membrane transport protein 31 403 8.1E-73 T 11-11-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 Gferi_RS24600 49f7526d6d654963a0c37bd9a1741562 283 Gene3D G3DSA:1.10.10.10 8 76 5.8E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS24600 49f7526d6d654963a0c37bd9a1741562 283 SUPERFAMILY SSF46689 4 76 4.12E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS24600 49f7526d6d654963a0c37bd9a1741562 283 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 76 3.2E-17 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Gferi_RS24600 49f7526d6d654963a0c37bd9a1741562 283 Gene3D G3DSA:3.40.50.10490 108 271 5.3E-39 T 11-11-2016 Gferi_RS24600 49f7526d6d654963a0c37bd9a1741562 283 Pfam PF01380 SIS domain 128 256 5.0E-24 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS24600 49f7526d6d654963a0c37bd9a1741562 283 SUPERFAMILY SSF53697 93 277 2.23E-40 T 11-11-2016 Gferi_RS02755 0301f01799db351a6fbff7147faf504b 227 PIRSF PIRSF021383 1 223 5.5E-60 T 11-11-2016 IPR014197 Sporulation protein YunB Gferi_RS02755 0301f01799db351a6fbff7147faf504b 227 TIGRFAM TIGR02832 spo_yunB: sporulation protein YunB 19 210 1.5E-66 T 11-11-2016 IPR014197 Sporulation protein YunB Gferi_RS02755 0301f01799db351a6fbff7147faf504b 227 Pfam PF09560 Sporulation protein YunB (Spo_YunB) 119 207 6.2E-36 T 11-11-2016 IPR014197 Sporulation protein YunB Gferi_RS13085 718d94680b9562c691b6e819e1187c70 130 Pfam PF03610 PTS system fructose IIA component 3 117 3.5E-28 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS13085 718d94680b9562c691b6e819e1187c70 130 Gene3D G3DSA:3.40.50.510 1 129 3.4E-49 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS13085 718d94680b9562c691b6e819e1187c70 130 SUPERFAMILY SSF53062 1 125 1.15E-35 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS13085 718d94680b9562c691b6e819e1187c70 130 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 2 123 8.1E-43 T 11-11-2016 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain Gferi_RS24440 8b47b5d90adbc1b24c058c88e33452e4 365 Pfam PF02653 Branched-chain amino acid transport system / permease component 65 342 1.8E-40 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS18295 d37476d6cc7f532fe928714d290f9eaa 553 Pfam PF02286 Dehydratase large subunit 1 552 0.0 T 11-11-2016 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 Gferi_RS18295 d37476d6cc7f532fe928714d290f9eaa 553 ProDom PD025428 SUBUNIT GLYCEROL DEHYDRATASE LARGE LYASE DHAB ALPHA DIOL B12-DEPENDENT METABOLISM 8 548 0.0 T 11-11-2016 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 Gferi_RS18295 d37476d6cc7f532fe928714d290f9eaa 553 Gene3D G3DSA:3.20.20.350 1 552 0.0 T 11-11-2016 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 Gferi_RS18295 d37476d6cc7f532fe928714d290f9eaa 553 SUPERFAMILY SSF51703 1 552 1.65E-281 T 11-11-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Gferi_RS18295 d37476d6cc7f532fe928714d290f9eaa 553 PIRSF PIRSF018507 1 553 0.0 T 11-11-2016 IPR003206 Diol/glycerol dehydratase, large subunit GO:0008152|GO:0016836|GO:0031419|GO:0050215 Gferi_RS08670 7db70c017e2a86155b67928c858f048e 150 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 9 148 2.0E-14 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 Gferi_RS22385 d2d93739dd51b1ba739fe09d26f85628 186 Gene3D G3DSA:3.40.50.1950 1 185 2.4E-77 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS22385 d2d93739dd51b1ba739fe09d26f85628 186 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 1 185 37.659 T 11-11-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 Gferi_RS22385 d2d93739dd51b1ba739fe09d26f85628 186 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 2 183 1.5E-81 T 11-11-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 Gferi_RS22385 d2d93739dd51b1ba739fe09d26f85628 186 Pfam PF02441 Flavoprotein 1 129 1.5E-27 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS22385 d2d93739dd51b1ba739fe09d26f85628 186 SUPERFAMILY SSF52507 1 185 8.5E-64 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Gferi_RS14275 8d52bd8e308ac378a6f32f73af93f432 314 Pfam PF13421 SPFH domain-Band 7 family 23 229 1.7E-46 T 11-11-2016 Gferi_RS14275 8d52bd8e308ac378a6f32f73af93f432 314 SUPERFAMILY SSF117892 117 226 5.75E-5 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS14510 ce8ccf065e83bf82e52238dc5ea2e44b 172 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 1 143 1.4E-26 T 11-11-2016 IPR018755 Bacteriophage Mu, Gp48 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 Pfam PF01016 Ribosomal L27 protein 12 91 3.9E-36 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 SUPERFAMILY SSF110324 12 92 2.09E-33 T 11-11-2016 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 Gene3D G3DSA:2.40.50.100 30 93 7.7E-33 T 11-11-2016 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 38 79 6.0E-15 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 11 94 28.155 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 PRINTS PR00063 Ribosomal protein L27 signature 39 63 4.3E-39 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 PRINTS PR00063 Ribosomal protein L27 signature 64 88 4.3E-39 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 PRINTS PR00063 Ribosomal protein L27 signature 14 38 4.3E-39 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 ProSitePatterns PS00831 Ribosomal protein L27 signature. 44 58 - T 11-11-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS26365 446a0759ce506b3fb751be24fbbfeaa6 100 TIGRFAM TIGR00062 L27: ribosomal protein bL27 11 91 1.5E-39 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS07360 995bd55462149dccabbea19b3a3e548b 75 Pfam PF01206 Sulfurtransferase TusA 6 73 1.6E-23 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS07360 995bd55462149dccabbea19b3a3e548b 75 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 6 30 - T 11-11-2016 IPR001455 TusA-like domain Gferi_RS07360 995bd55462149dccabbea19b3a3e548b 75 Gene3D G3DSA:3.30.110.40 4 73 2.1E-23 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS07360 995bd55462149dccabbea19b3a3e548b 75 SUPERFAMILY SSF64307 5 73 1.29E-21 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 Gene3D G3DSA:2.60.40.420 396 528 6.6E-35 T 11-11-2016 IPR008972 Cupredoxin Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 SUPERFAMILY SSF49503 207 375 4.42E-21 T 11-11-2016 IPR008972 Cupredoxin Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 ProSitePatterns PS00080 Multicopper oxidases signature 2. 509 520 - T 11-11-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 Gene3D G3DSA:2.60.40.420 74 202 8.9E-38 T 11-11-2016 IPR008972 Cupredoxin Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 Pfam PF07731 Multicopper oxidase 417 522 4.8E-25 T 11-11-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 SUPERFAMILY SSF49503 84 222 1.34E-39 T 11-11-2016 IPR008972 Cupredoxin Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 Pfam PF00394 Multicopper oxidase 211 353 3.2E-10 T 11-11-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 Pfam PF07732 Multicopper oxidase 90 204 1.0E-35 T 11-11-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 Gene3D G3DSA:2.60.40.420 207 377 1.1E-25 T 11-11-2016 IPR008972 Cupredoxin Gferi_RS05960 17715ed9782f22a4826dec3f4ae6bc73 545 SUPERFAMILY SSF49503 411 522 5.1E-32 T 11-11-2016 IPR008972 Cupredoxin Gferi_RS07630 69707a29381918a421c15b3492e273dc 191 Gene3D G3DSA:3.40.50.150 39 164 6.9E-28 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS07630 69707a29381918a421c15b3492e273dc 191 SUPERFAMILY SSF53335 20 160 8.29E-30 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS07630 69707a29381918a421c15b3492e273dc 191 Pfam PF13847 Methyltransferase domain 47 157 6.2E-17 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS10960 551296b0009368f15f71a7bd0059811b 84 Gene3D G3DSA:1.10.10.10 7 41 5.9E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10960 551296b0009368f15f71a7bd0059811b 84 Pfam PF12116 Stage III sporulation protein D 2 81 4.9E-44 T 11-11-2016 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID Gferi_RS10960 551296b0009368f15f71a7bd0059811b 84 TIGRFAM TIGR02844 spore_III_D: sporulation transcriptional regulator SpoIIID 2 80 4.8E-46 T 11-11-2016 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID Gferi_RS10960 551296b0009368f15f71a7bd0059811b 84 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 41 - T 11-11-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Gferi_RS14165 a8ca4973a75c733085e8659e51f3e517 567 Gene3D G3DSA:3.90.226.10 369 565 7.8E-29 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS14165 a8ca4973a75c733085e8659e51f3e517 567 SMART SM00245 339 544 1.2E-5 T 11-11-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Gferi_RS14165 a8ca4973a75c733085e8659e51f3e517 567 SUPERFAMILY SSF52096 193 262 2.32E-36 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS14165 a8ca4973a75c733085e8659e51f3e517 567 SUPERFAMILY SSF52096 371 565 2.32E-36 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS14165 a8ca4973a75c733085e8659e51f3e517 567 Pfam PF03572 Peptidase family S41 380 542 1.8E-15 T 11-11-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Gferi_RS24330 a2c737051ad4ad43029cc177c32de780 740 Pfam PF01841 Transglutaminase-like superfamily 420 536 3.7E-26 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS24330 a2c737051ad4ad43029cc177c32de780 740 SUPERFAMILY SSF54001 401 547 4.35E-36 T 11-11-2016 Gferi_RS24330 a2c737051ad4ad43029cc177c32de780 740 Gene3D G3DSA:3.90.260.10 401 552 1.7E-28 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS24330 a2c737051ad4ad43029cc177c32de780 740 SMART SM00460 467 538 1.3E-18 T 11-11-2016 IPR002931 Transglutaminase-like Gferi_RS06650 067e7b2330b2c935a704d36def5f97e8 181 Pfam PF13411 MerR HTH family regulatory protein 7 71 1.2E-15 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS06650 067e7b2330b2c935a704d36def5f97e8 181 Gene3D G3DSA:1.10.1660.10 61 111 9.3E-6 T 11-11-2016 Gferi_RS06650 067e7b2330b2c935a704d36def5f97e8 181 SUPERFAMILY SSF46955 6 111 6.23E-26 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS06650 067e7b2330b2c935a704d36def5f97e8 181 Gene3D G3DSA:1.10.1660.10 4 60 1.1E-24 T 11-11-2016 Gferi_RS06650 067e7b2330b2c935a704d36def5f97e8 181 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 18 31 3.5E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS06650 067e7b2330b2c935a704d36def5f97e8 181 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 42 62 3.5E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS06650 067e7b2330b2c935a704d36def5f97e8 181 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 7 18 3.5E-8 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS06650 067e7b2330b2c935a704d36def5f97e8 181 SMART SM00422 6 75 1.7E-24 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS21420 42dbb13b9e9d8a6aa8263a8cd1a3d205 125 Pfam PF13411 MerR HTH family regulatory protein 18 63 3.7E-6 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS21420 42dbb13b9e9d8a6aa8263a8cd1a3d205 125 SUPERFAMILY SSF46955 18 115 2.34E-20 T 11-11-2016 IPR009061 Putative DNA-binding domain Gferi_RS21420 42dbb13b9e9d8a6aa8263a8cd1a3d205 125 SMART SM00422 1 68 9.0E-4 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 Gferi_RS21420 42dbb13b9e9d8a6aa8263a8cd1a3d205 125 Gene3D G3DSA:1.10.1660.10 18 116 9.6E-20 T 11-11-2016 Gferi_RS22470 b68a170342799f27ccc369454cdf0978 528 SUPERFAMILY SSF51905 11 296 8.17E-13 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22470 b68a170342799f27ccc369454cdf0978 528 Gene3D G3DSA:3.50.50.60 13 83 6.7E-7 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22470 b68a170342799f27ccc369454cdf0978 528 Gene3D G3DSA:3.50.50.60 200 303 6.7E-7 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS22470 b68a170342799f27ccc369454cdf0978 528 Pfam PF06100 MCRA family 8 497 4.9E-218 T 11-11-2016 IPR010354 Oleate hydratase GO:0006631|GO:0050151|GO:0071949 Gferi_RS08765 dccd924a5fcd7cc643d031726f8609c5 194 SUPERFAMILY SSF141571 14 193 7.36E-41 T 11-11-2016 Gferi_RS08765 dccd924a5fcd7cc643d031726f8609c5 194 Pfam PF13599 Pentapeptide repeats (9 copies) 96 157 1.3E-9 T 11-11-2016 IPR001646 Pentapeptide repeat Gferi_RS08765 dccd924a5fcd7cc643d031726f8609c5 194 Pfam PF13599 Pentapeptide repeats (9 copies) 29 88 1.1E-12 T 11-11-2016 IPR001646 Pentapeptide repeat Gferi_RS02710 d3ff19c19c784a250f178b449a5e1181 120 Pfam PF01925 Sulfite exporter TauE/SafE 3 117 1.3E-20 T 11-11-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 Gferi_RS22940 99f95ee9c50b81cd0f1e96beff07cf4d 303 Pfam PF16138 Domain of unknown function (4846) 61 300 1.6E-107 T 11-11-2016 IPR032315 Protein of unknown function DUF4846 Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 Pfam PF00158 Sigma-54 interaction domain 120 285 3.3E-45 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 838 969 2.8E-28 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 SUPERFAMILY SSF53062 588 706 8.37E-18 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 SUPERFAMILY SSF52540 120 356 2.74E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 Gene3D G3DSA:3.40.50.510 586 707 3.3E-37 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 Pfam PF00874 PRD domain 490 575 8.8E-21 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 SUPERFAMILY SSF55804 833 970 2.09E-29 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 SMART SM00382 143 293 9.3E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 Pfam PF03610 PTS system fructose IIA component 590 689 1.1E-11 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 SUPERFAMILY SSF63520 479 576 6.28E-24 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 Gene3D G3DSA:3.40.930.10 829 969 1.4E-34 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 Gene3D G3DSA:3.40.50.300 117 294 1.0E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 881 897 - T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS25650 2f1cc976f51d587c69d87b4e3694088b 979 Gene3D G3DSA:1.10.1790.10 481 576 1.4E-24 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS14425 8b7c4bbf8393ed5ab2ad00c2f55be3c8 171 ProSitePatterns PS00893 Nudix box signature. 45 66 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Gferi_RS14425 8b7c4bbf8393ed5ab2ad00c2f55be3c8 171 SUPERFAMILY SSF55811 6 159 1.1E-18 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS14425 8b7c4bbf8393ed5ab2ad00c2f55be3c8 171 Pfam PF00293 NUDIX domain 23 150 1.5E-13 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS14425 8b7c4bbf8393ed5ab2ad00c2f55be3c8 171 Gene3D G3DSA:3.90.79.10 7 145 1.5E-18 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS24980 85621152fa30a0e6237b231b8fb8941a 79 Gene3D G3DSA:1.10.238.80 1 79 4.7E-33 T 11-11-2016 IPR024093 Uncharacterised protein family MTH865 Gferi_RS24980 85621152fa30a0e6237b231b8fb8941a 79 SUPERFAMILY SSF69025 1 79 2.22E-26 T 11-11-2016 IPR024093 Uncharacterised protein family MTH865 Gferi_RS24980 85621152fa30a0e6237b231b8fb8941a 79 Pfam PF07747 MTH865-like family 7 75 4.0E-28 T 11-11-2016 IPR024093 Uncharacterised protein family MTH865 Gferi_RS09475 939140f61f4f9880b1954c2f0e740fab 339 Pfam PF10646 Sporulation and spore germination 215 319 5.4E-12 T 11-11-2016 IPR019606 GerMN domain Gferi_RS09475 939140f61f4f9880b1954c2f0e740fab 339 Pfam PF10646 Sporulation and spore germination 61 171 4.2E-19 T 11-11-2016 IPR019606 GerMN domain Gferi_RS09475 939140f61f4f9880b1954c2f0e740fab 339 SMART SM00909 234 323 3.3E-10 T 11-11-2016 IPR019606 GerMN domain Gferi_RS09475 939140f61f4f9880b1954c2f0e740fab 339 SMART SM00909 84 176 2.2E-20 T 11-11-2016 IPR019606 GerMN domain Gferi_RS19795 20c29dfec7f5fc338394565de1b01368 214 SUPERFAMILY SSF47644 3 78 7.32E-13 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19795 20c29dfec7f5fc338394565de1b01368 214 Gene3D G3DSA:1.10.1240.10 3 72 3.1E-8 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19795 20c29dfec7f5fc338394565de1b01368 214 SMART SM01018 1 81 6.4E-12 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19795 20c29dfec7f5fc338394565de1b01368 214 Pfam PF02607 B12 binding domain 2 74 8.8E-7 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19795 20c29dfec7f5fc338394565de1b01368 214 SUPERFAMILY SSF52242 69 207 8.9E-41 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19795 20c29dfec7f5fc338394565de1b01368 214 Pfam PF02310 B12 binding domain 86 193 8.8E-23 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19795 20c29dfec7f5fc338394565de1b01368 214 Gene3D G3DSA:3.40.50.280 73 209 6.3E-45 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS22610 280e4786a925d14454701af6c22dc87a 332 Gene3D G3DSA:3.40.190.10 140 248 2.4E-4 T 11-11-2016 Gferi_RS22610 280e4786a925d14454701af6c22dc87a 332 PIRSF PIRSF017082 3 328 3.8E-72 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS22610 280e4786a925d14454701af6c22dc87a 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 62 299 2.6E-43 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS22610 280e4786a925d14454701af6c22dc87a 332 SUPERFAMILY SSF53850 137 298 7.37E-16 T 11-11-2016 Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 SMART SM00636 106 409 5.4E-26 T 11-11-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 SMART SM00257 3 47 4.1E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 SMART SM00257 52 97 8.7E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 SUPERFAMILY SSF54106 2 46 4.84E-10 T 11-11-2016 IPR018392 LysM domain Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 Pfam PF00704 Glycosyl hydrolases family 18 125 407 2.2E-25 T 11-11-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 SUPERFAMILY SSF51445 380 425 3.48E-48 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 SUPERFAMILY SSF51445 110 321 3.48E-48 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 Gene3D G3DSA:3.20.20.80 117 407 8.4E-37 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 SUPERFAMILY SSF54106 51 97 6.28E-10 T 11-11-2016 IPR018392 LysM domain Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 Gene3D G3DSA:3.10.350.10 2 46 3.5E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 Pfam PF01476 LysM domain 4 46 2.6E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 Pfam PF01476 LysM domain 53 97 1.1E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS19900 4d784da64dd50f55e7a021db164684b3 427 Gene3D G3DSA:3.10.350.10 50 98 9.1E-14 T 11-11-2016 IPR018392 LysM domain Gferi_RS23245 9242d4492fff1ccc54082d769c4de461 183 Pfam PF01613 Flavin reductase like domain 4 163 3.1E-27 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS23245 9242d4492fff1ccc54082d769c4de461 183 SMART SM00903 1 147 8.8E-22 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS23245 9242d4492fff1ccc54082d769c4de461 183 Gene3D G3DSA:2.30.110.10 2 167 1.1E-57 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS23245 9242d4492fff1ccc54082d769c4de461 183 SUPERFAMILY SSF50475 3 165 8.34E-44 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS01230 07df9416e6feebbf16afbbfdaa82dfcd 197 SUPERFAMILY SSF109604 8 181 4.4E-27 T 11-11-2016 Gferi_RS01230 07df9416e6feebbf16afbbfdaa82dfcd 197 Gene3D G3DSA:1.10.3210.10 9 169 2.9E-21 T 11-11-2016 IPR006674 HD domain Gferi_RS01230 07df9416e6feebbf16afbbfdaa82dfcd 197 SMART SM00471 18 152 1.2E-4 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS01230 07df9416e6feebbf16afbbfdaa82dfcd 197 Pfam PF13487 HD domain 73 134 1.1E-10 T 11-11-2016 Gferi_RS08105 375024cf947fb41d637b06b89ca9c221 553 Gene3D G3DSA:3.30.565.10 395 545 3.2E-11 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS08105 375024cf947fb41d637b06b89ca9c221 553 SUPERFAMILY SSF55874 399 544 1.37E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS08105 375024cf947fb41d637b06b89ca9c221 553 Pfam PF06580 Histidine kinase 344 423 3.3E-24 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 Gferi_RS08105 375024cf947fb41d637b06b89ca9c221 553 SUPERFAMILY SSF158472 288 336 4.45E-12 T 11-11-2016 Gferi_RS08105 375024cf947fb41d637b06b89ca9c221 553 SMART SM00304 287 339 6.6E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS08105 375024cf947fb41d637b06b89ca9c221 553 Pfam PF00672 HAMP domain 272 335 1.3E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS10515 76e46ede2e9590c99a287f4ae688d07a 157 SMART SM00347 31 129 6.5E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS10515 76e46ede2e9590c99a287f4ae688d07a 157 Pfam PF13463 Winged helix DNA-binding domain 43 102 2.8E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS10515 76e46ede2e9590c99a287f4ae688d07a 157 Gene3D G3DSA:1.10.10.10 36 143 1.5E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10515 76e46ede2e9590c99a287f4ae688d07a 157 SUPERFAMILY SSF46785 33 141 1.15E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20840 5eeb040e612a5a96283578241dd93af5 502 Pfam PF01740 STAS domain 390 482 9.9E-14 T 11-11-2016 IPR002645 STAS domain Gferi_RS20840 5eeb040e612a5a96283578241dd93af5 502 Gene3D G3DSA:3.30.750.24 392 479 1.3E-12 T 11-11-2016 IPR002645 STAS domain Gferi_RS20840 5eeb040e612a5a96283578241dd93af5 502 Pfam PF00916 Sulfate permease family 15 137 3.0E-26 T 11-11-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Gferi_RS20840 5eeb040e612a5a96283578241dd93af5 502 Pfam PF00916 Sulfate permease family 159 346 1.1E-40 T 11-11-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 Gferi_RS20840 5eeb040e612a5a96283578241dd93af5 502 SUPERFAMILY SSF52091 392 480 1.16E-12 T 11-11-2016 IPR002645 STAS domain Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Pfam PF08279 HTH domain 6 64 5.6E-7 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Gene3D G3DSA:1.10.10.10 1 67 5.7E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Gene3D G3DSA:1.10.10.10 78 154 4.7E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Pfam PF00874 PRD domain 218 302 1.9E-20 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Pfam PF00874 PRD domain 327 416 5.8E-24 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 559 688 2.1E-10 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Gene3D G3DSA:3.40.930.10 545 687 4.8E-12 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Pfam PF05043 Mga helix-turn-helix domain 91 163 2.0E-7 T 11-11-2016 IPR007737 Mga helix-turn-helix domain Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 SUPERFAMILY SSF55804 546 690 4.32E-12 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Gene3D G3DSA:1.10.1790.10 321 420 9.4E-25 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Gene3D G3DSA:1.10.1790.10 210 306 1.6E-21 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 SUPERFAMILY SSF63520 204 305 7.32E-21 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 SUPERFAMILY SSF52794 429 508 1.41E-9 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 SUPERFAMILY SSF63520 319 421 1.44E-25 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS19705 cb0c38d34471020d8ac8f3be5717edb9 703 Gene3D G3DSA:3.40.50.270 429 512 4.0E-10 T 11-11-2016 Gferi_RS12695 ccb5cbe78340b5dd53ac7645e8354627 69 Pfam PF12645 Helix-turn-helix domain 4 57 1.2E-12 T 11-11-2016 IPR024760 Helix-turn-helix, conjugative transposon-like Gferi_RS00080 42270a556b7f980eb03e119e29e5b3b4 253 SUPERFAMILY SSF64167 1 249 3.66E-80 T 11-11-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 Gferi_RS00080 42270a556b7f980eb03e119e29e5b3b4 253 Gene3D G3DSA:3.40.1210.10 2 249 1.1E-86 T 11-11-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 Gferi_RS00080 42270a556b7f980eb03e119e29e5b3b4 253 Pfam PF01975 Survival protein SurE 3 188 1.7E-58 T 11-11-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 Gferi_RS00080 42270a556b7f980eb03e119e29e5b3b4 253 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 253 38.296 T 11-11-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 Gferi_RS00080 42270a556b7f980eb03e119e29e5b3b4 253 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 2 238 1.9E-78 T 11-11-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 Gferi_RS10965 378cae8cb5939cbd09b36f56c01bf953 282 Pfam PF01551 Peptidase family M23 177 275 1.5E-24 T 11-11-2016 IPR016047 Peptidase M23 Gferi_RS10965 378cae8cb5939cbd09b36f56c01bf953 282 SUPERFAMILY SSF51261 100 279 1.05E-32 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS10965 378cae8cb5939cbd09b36f56c01bf953 282 Gene3D G3DSA:2.70.70.10 128 281 2.6E-32 T 11-11-2016 Gferi_RS03705 556d994d01a8cf353986bfa8e4ea446a 136 Pfam PF01478 Type IV leader peptidase family 5 104 1.5E-15 T 11-11-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Gferi_RS24850 640d98f9e22b57649a1de11ed480234c 420 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 15 384 7.5E-48 T 11-11-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 Gferi_RS12080 46ed5b4c3fd17aca84eb3714580704b8 415 SUPERFAMILY SSF111352 7 384 1.7E-116 T 11-11-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Gferi_RS12080 46ed5b4c3fd17aca84eb3714580704b8 415 Gene3D G3DSA:1.10.3430.10 6 384 1.9E-128 T 11-11-2016 IPR029020 Ammonium/urea transporter Gferi_RS12080 46ed5b4c3fd17aca84eb3714580704b8 415 ProSitePatterns PS01219 Ammonium transporters signature. 157 182 - T 11-11-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 Gferi_RS12080 46ed5b4c3fd17aca84eb3714580704b8 415 TIGRFAM TIGR00836 amt: ammonium transporter 8 403 7.7E-134 T 11-11-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 Gferi_RS12080 46ed5b4c3fd17aca84eb3714580704b8 415 Pfam PF00909 Ammonium Transporter Family 10 401 1.3E-127 T 11-11-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 Gferi_RS03435 ec86c7b2ce7af6944ed497d878993a66 207 Pfam PF07833 Copper amine oxidase N-terminal domain 37 81 6.1E-5 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12585 a0d6f1f1479f403fcd85957d8aa9cfe3 145 SUPERFAMILY SSF53927 1 143 1.39E-55 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 Gferi_RS12585 a0d6f1f1479f403fcd85957d8aa9cfe3 145 Gene3D G3DSA:3.40.140.10 1 140 6.4E-61 T 11-11-2016 Gferi_RS12585 a0d6f1f1479f403fcd85957d8aa9cfe3 145 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 1 142 48.808 T 11-11-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Gferi_RS12585 a0d6f1f1479f403fcd85957d8aa9cfe3 145 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 46 83 - T 11-11-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Gferi_RS12585 a0d6f1f1479f403fcd85957d8aa9cfe3 145 Pfam PF14437 MafB19-like deaminase 1 142 4.2E-41 T 11-11-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Gferi_RS26830 21b60bfcc342504e57095f07054b7c58 147 SUPERFAMILY SSF82649 5 123 2.88E-45 T 11-11-2016 Gferi_RS26830 21b60bfcc342504e57095f07054b7c58 147 Gene3D G3DSA:3.90.1010.10 2 123 3.2E-49 T 11-11-2016 Gferi_RS26830 21b60bfcc342504e57095f07054b7c58 147 TIGRFAM TIGR03419 NifU_clost: FeS cluster assembly scaffold protein NifU 3 122 2.5E-65 T 11-11-2016 IPR017787 NIF system FeS cluster assembly, NifU-like Gferi_RS26830 21b60bfcc342504e57095f07054b7c58 147 Pfam PF01592 NifU-like N terminal domain 2 123 1.8E-49 T 11-11-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Gferi_RS01590 122eaad80ad508ae9a740c00da1a7d91 187 SUPERFAMILY SSF54637 76 182 5.53E-22 T 11-11-2016 IPR029069 HotDog domain Gferi_RS01590 122eaad80ad508ae9a740c00da1a7d91 187 Pfam PF03061 Thioesterase superfamily 118 172 1.9E-4 T 11-11-2016 IPR006683 Thioesterase domain Reactome: R-HSA-75105 Gferi_RS01590 122eaad80ad508ae9a740c00da1a7d91 187 Gene3D G3DSA:3.10.129.10 63 186 2.1E-25 T 11-11-2016 IPR029069 HotDog domain Gferi_RS01590 122eaad80ad508ae9a740c00da1a7d91 187 SUPERFAMILY SSF46785 8 55 1.95E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01590 122eaad80ad508ae9a740c00da1a7d91 187 PIRSF PIRSF037733 3 187 8.3E-80 T 11-11-2016 IPR017275 Transcription factor FapR GO:0003700|GO:0045717|GO:0045892 Gferi_RS01590 122eaad80ad508ae9a740c00da1a7d91 187 Gene3D G3DSA:1.10.10.10 4 44 5.0E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01590 122eaad80ad508ae9a740c00da1a7d91 187 Pfam PF08220 DeoR-like helix-turn-helix domain 11 44 4.5E-5 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS19230 29f90a8db231387aaacd9387ba9b8c21 276 PIRSF PIRSF004846 1 275 6.5E-84 T 11-11-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 Gferi_RS19230 29f90a8db231387aaacd9387ba9b8c21 276 Pfam PF13531 Bacterial extracellular solute-binding protein 49 271 1.2E-52 T 11-11-2016 Gferi_RS19230 29f90a8db231387aaacd9387ba9b8c21 276 Gene3D G3DSA:3.40.190.10 131 232 8.0E-37 T 11-11-2016 Gferi_RS19230 29f90a8db231387aaacd9387ba9b8c21 276 SUPERFAMILY SSF53850 48 272 4.48E-67 T 11-11-2016 Gferi_RS19230 29f90a8db231387aaacd9387ba9b8c21 276 Gene3D G3DSA:3.40.190.10 233 272 1.3E-27 T 11-11-2016 Gferi_RS19230 29f90a8db231387aaacd9387ba9b8c21 276 Gene3D G3DSA:3.40.190.10 46 130 1.3E-27 T 11-11-2016 Gferi_RS19230 29f90a8db231387aaacd9387ba9b8c21 276 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 54 270 1.7E-68 T 11-11-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 Gferi_RS19860 6ee0c2cc0aae880d1abd28d1ced17de3 518 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 42 508 1.6E-182 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS19860 6ee0c2cc0aae880d1abd28d1ced17de3 518 PIRSF PIRSF005690 26 518 2.4E-177 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS13915 582fde2b763ae3dfd50c61bd4c342dac 259 PIRSF PIRSF006648 7 247 1.5E-15 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS13915 582fde2b763ae3dfd50c61bd4c342dac 259 Pfam PF01061 ABC-2 type transporter 10 209 4.6E-19 T 11-11-2016 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Gferi_RS13915 582fde2b763ae3dfd50c61bd4c342dac 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 170 189 1.7E-10 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS13915 582fde2b763ae3dfd50c61bd4c342dac 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 133 157 1.7E-10 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS13915 582fde2b763ae3dfd50c61bd4c342dac 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 25 46 1.7E-10 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 Gene3D G3DSA:3.40.50.20 8 115 1.2E-39 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 Gene3D G3DSA:3.30.1490.20 122 187 2.9E-15 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 SUPERFAMILY SSF51246 312 385 2.51E-16 T 11-11-2016 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 10 368 42.284 T 11-11-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 11 371 4.5E-129 T 11-11-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 Gene3D G3DSA:3.30.470.20 188 382 8.5E-73 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 Pfam PF02222 ATP-grasp domain 117 287 1.2E-52 T 11-11-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 SUPERFAMILY SSF52440 8 104 5.47E-29 T 11-11-2016 IPR016185 Pre-ATP-grasp domain Gferi_RS10065 3300daa29e0b9ae76049b24aef00f553 392 SUPERFAMILY SSF56059 107 308 5.66E-59 T 11-11-2016 Gferi_RS22705 22e2210234d9f216ec113ced4df94f1a 102 Gene3D G3DSA:3.40.50.270 1 85 1.7E-13 T 11-11-2016 Gferi_RS22705 22e2210234d9f216ec113ced4df94f1a 102 SUPERFAMILY SSF52794 1 85 1.88E-16 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS22705 22e2210234d9f216ec113ced4df94f1a 102 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 82 2.3E-11 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS10175 2ba459c59a03e1e6c463c272fb858723 658 SUPERFAMILY SSF46785 484 607 6.93E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10175 2ba459c59a03e1e6c463c272fb858723 658 Gene3D G3DSA:1.10.10.10 494 582 1.3E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10175 2ba459c59a03e1e6c463c272fb858723 658 Pfam PF00474 Sodium:solute symporter family 34 434 1.0E-25 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS24015 a8a3a1bd2c619ea75d7055ae39ef532f 445 PIRSF PIRSF006603 1 444 6.3E-100 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS24015 a8a3a1bd2c619ea75d7055ae39ef532f 445 TIGRFAM TIGR00797 matE: MATE efflux family protein 16 416 9.2E-83 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS24015 a8a3a1bd2c619ea75d7055ae39ef532f 445 Pfam PF01554 MatE 242 402 6.3E-28 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS24015 a8a3a1bd2c619ea75d7055ae39ef532f 445 Pfam PF01554 MatE 16 176 2.3E-31 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS11910 3863f8f2404313ade4a623a5be7bf57e 336 Pfam PF17179 4Fe-4S dicluster domain 223 319 1.4E-31 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS11910 3863f8f2404313ade4a623a5be7bf57e 336 Gene3D G3DSA:1.10.1060.10 206 332 5.5E-9 T 11-11-2016 Gferi_RS11910 3863f8f2404313ade4a623a5be7bf57e 336 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 305 316 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS11910 3863f8f2404313ade4a623a5be7bf57e 336 TIGRFAM TIGR02910 sulfite_red_A: sulfite reductase, subunit A 1 334 1.1E-158 T 11-11-2016 IPR014259 Sulphite reductase, subunit A Gferi_RS11910 3863f8f2404313ade4a623a5be7bf57e 336 SUPERFAMILY SSF46548 209 332 1.41E-13 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 Gferi_RS22865 0562eb852f1d6e47d0b001f39689a06a 275 Gene3D G3DSA:2.60.120.520 20 130 6.9E-44 T 11-11-2016 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS22865 0562eb852f1d6e47d0b001f39689a06a 275 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 275 49.848 T 11-11-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS22865 0562eb852f1d6e47d0b001f39689a06a 275 Gene3D G3DSA:2.60.120.500 131 275 3.8E-66 T 11-11-2016 IPR027447 5-keto-4-deoxyuronate isomerase, C-terminal domain KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS22865 0562eb852f1d6e47d0b001f39689a06a 275 Pfam PF04962 KduI/IolB family 56 262 6.7E-30 T 11-11-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS22865 0562eb852f1d6e47d0b001f39689a06a 275 SUPERFAMILY SSF51182 1 259 3.93E-95 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS22865 0562eb852f1d6e47d0b001f39689a06a 275 PIRSF PIRSF006625 1 275 2.7E-119 T 11-11-2016 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 Gferi_RS11550 fc8ceb55ffeb4adfa9c54fb6a89bb7af 138 Pfam PF09148 Domain of unknown function (DUF1934) 7 135 2.5E-36 T 11-11-2016 IPR015231 Protein of unknown function DUF1934 Gferi_RS11550 fc8ceb55ffeb4adfa9c54fb6a89bb7af 138 Gene3D G3DSA:2.40.128.20 2 137 2.7E-35 T 11-11-2016 IPR012674 Calycin Gferi_RS11550 fc8ceb55ffeb4adfa9c54fb6a89bb7af 138 SUPERFAMILY SSF50814 2 137 2.35E-29 T 11-11-2016 IPR011038 Calycin-like Gferi_RS13975 22faa8a703ca696f386c2ece63d95db3 270 SUPERFAMILY SSF47413 230 270 4.4E-5 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS13975 22faa8a703ca696f386c2ece63d95db3 270 SUPERFAMILY SSF143422 13 126 5.36E-28 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS13975 22faa8a703ca696f386c2ece63d95db3 270 Gene3D G3DSA:1.10.260.40 233 270 6.0E-4 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS13975 22faa8a703ca696f386c2ece63d95db3 270 Pfam PF01797 Transposase IS200 like 13 123 5.0E-18 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS13975 22faa8a703ca696f386c2ece63d95db3 270 SMART SM01321 10 123 1.7E-37 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS13975 22faa8a703ca696f386c2ece63d95db3 270 Gene3D G3DSA:3.30.70.1290 13 126 5.2E-16 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 Gene3D G3DSA:3.30.70.1170 181 237 5.2E-9 T 11-11-2016 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 184 444 2.1E-64 T 11-11-2016 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 7 444 7.9E-125 T 11-11-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 259 269 4.0E-30 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 376 392 4.0E-30 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 427 444 4.0E-30 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 230 244 4.0E-30 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 326 338 4.0E-30 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 Pfam PF01029 NusB family 5 128 2.0E-28 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 SUPERFAMILY SSF53335 145 445 4.92E-71 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01690 deba44043a38ebe35245245617b07460 446 Gene3D G3DSA:3.40.50.150 240 444 2.8E-64 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01690 deba44043a38ebe35245245617b07460 446 Pfam PF01189 16S rRNA methyltransferase RsmB/F 249 443 9.3E-60 T 11-11-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 Gene3D G3DSA:1.10.940.10 2 157 1.2E-44 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Gferi_RS01690 deba44043a38ebe35245245617b07460 446 SUPERFAMILY SSF48013 5 156 1.96E-35 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Gferi_RS25195 474691e70a9da095738611f1f97dec47 555 Gene3D G3DSA:3.10.105.10 319 524 6.8E-46 T 11-11-2016 Gferi_RS25195 474691e70a9da095738611f1f97dec47 555 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 88 449 2.4E-85 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS25195 474691e70a9da095738611f1f97dec47 555 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 93 115 - T 11-11-2016 IPR023765 Solute-binding protein family 5, conserved site Gferi_RS25195 474691e70a9da095738611f1f97dec47 555 Gene3D G3DSA:3.40.190.10 199 318 4.0E-30 T 11-11-2016 Gferi_RS25195 474691e70a9da095738611f1f97dec47 555 Gene3D G3DSA:3.90.76.10 57 198 2.1E-39 T 11-11-2016 Gferi_RS25195 474691e70a9da095738611f1f97dec47 555 SUPERFAMILY SSF53850 45 546 3.26E-120 T 11-11-2016 Gferi_RS25195 474691e70a9da095738611f1f97dec47 555 PIRSF PIRSF002741 2 554 9.0E-97 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS13875 30c6a8d447f31c3791a5fbcf346c8818 383 Pfam PF14319 Transposase zinc-binding domain 7 112 2.0E-33 T 11-11-2016 IPR026889 Transposase zinc-binding domain Gferi_RS13875 30c6a8d447f31c3791a5fbcf346c8818 383 Pfam PF04986 Putative transposase 138 323 1.5E-57 T 11-11-2016 IPR007069 Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 Gferi_RS11465 0554662419e5081f20017819b87ce260 169 SUPERFAMILY SSF58100 13 128 3.92E-7 T 11-11-2016 Gferi_RS11465 0554662419e5081f20017819b87ce260 169 Gene3D G3DSA:1.10.287.950 60 143 4.2E-5 T 11-11-2016 Gferi_RS27025 42e83a15f833efde213803de43074d50 304 Gene3D G3DSA:3.90.550.10 4 273 9.9E-77 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS27025 42e83a15f833efde213803de43074d50 304 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 264 2.2E-123 T 11-11-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 Gferi_RS27025 42e83a15f833efde213803de43074d50 304 Pfam PF00483 Nucleotidyl transferase 5 266 2.9E-34 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS27025 42e83a15f833efde213803de43074d50 304 SUPERFAMILY SSF53448 1 268 3.03E-70 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS26475 e7eecea3421091e3f7df3bb1a97d1e1c 560 Pfam PF03235 Protein of unknown function DUF262 13 222 3.6E-35 T 11-11-2016 IPR004919 Domain of unknown function DUF262 Gferi_RS26475 e7eecea3421091e3f7df3bb1a97d1e1c 560 Pfam PF07510 Protein of unknown function (DUF1524) 403 546 5.3E-29 T 11-11-2016 IPR011089 Domain of unknown function DUF1524 Gferi_RS23515 3565ef53dd1d30c9d17ebe97e6dd8afc 94 SMART SM00990 1 81 9.8E-21 T 11-11-2016 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 Gferi_RS04300 5967b279917ed648c05a88e0fb18e031 364 SUPERFAMILY SSF88713 84 270 1.49E-19 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS04300 5967b279917ed648c05a88e0fb18e031 364 Gene3D G3DSA:3.20.20.370 97 297 1.7E-14 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS04300 5967b279917ed648c05a88e0fb18e031 364 Pfam PF01522 Polysaccharide deacetylase 124 253 2.7E-9 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS04390 ef6263af31f432554e79045689c618ab 332 Pfam PF09084 NMT1/THI5 like 45 254 1.4E-22 T 11-11-2016 IPR015168 SsuA/THI5-like Gferi_RS04390 ef6263af31f432554e79045689c618ab 332 SUPERFAMILY SSF53850 38 258 2.34E-34 T 11-11-2016 Gferi_RS04390 ef6263af31f432554e79045689c618ab 332 Gene3D G3DSA:3.40.190.10 134 247 6.8E-8 T 11-11-2016 Gferi_RS18940 cc196330aa04dbbe672ce69f34b3f5f6 420 Gene3D G3DSA:3.10.450.50 4 25 2.7E-6 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS18940 cc196330aa04dbbe672ce69f34b3f5f6 420 Pfam PF02810 SEC-C motif 8 25 1.1E-7 T 11-11-2016 IPR004027 SEC-C motif Gferi_RS18940 cc196330aa04dbbe672ce69f34b3f5f6 420 SUPERFAMILY SSF103642 6 26 7.03E-6 T 11-11-2016 Gferi_RS26535 66e7272ef5400f8e7d4b39c3c5cb6f5c 152 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 100 105 - T 11-11-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site Gferi_RS26535 66e7272ef5400f8e7d4b39c3c5cb6f5c 152 Pfam PF04002 RadC-like JAB domain 30 150 5.0E-41 T 11-11-2016 IPR025657 RadC-like JAB domain Gferi_RS26535 66e7272ef5400f8e7d4b39c3c5cb6f5c 152 SUPERFAMILY SSF102712 79 117 7.85E-5 T 11-11-2016 Gferi_RS26535 66e7272ef5400f8e7d4b39c3c5cb6f5c 152 Gene3D G3DSA:3.40.140.10 27 152 2.7E-43 T 11-11-2016 Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 SUPERFAMILY SSF46785 2 109 2.83E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 SUPERFAMILY SSF53850 91 293 1.09E-30 T 11-11-2016 Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 Gene3D G3DSA:1.10.10.10 2 86 1.6E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.2E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.2E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.2E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 Gene3D G3DSA:3.40.190.10 91 188 1.7E-14 T 11-11-2016 Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 Gene3D G3DSA:3.40.190.10 189 261 5.8E-8 T 11-11-2016 Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.9E-19 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Gferi_RS07370 eb13ba2cff7db819b7f46ef7ec011a2d 298 Pfam PF03466 LysR substrate binding domain 89 291 9.3E-33 T 11-11-2016 IPR005119 LysR, substrate-binding Gferi_RS12635 c07f54fa199e7d4d4565e7ab0af52743 129 SUPERFAMILY SSF63520 18 112 1.12E-16 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS12635 c07f54fa199e7d4d4565e7ab0af52743 129 Gene3D G3DSA:1.10.1790.10 18 112 3.7E-15 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS12635 c07f54fa199e7d4d4565e7ab0af52743 129 Pfam PF00874 PRD domain 29 112 6.6E-15 T 11-11-2016 IPR011608 PRD domain GO:0006355 Gferi_RS04405 3b19f6e65812ea3ec7089d4897b17c99 148 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 7 133 1.5E-43 T 11-11-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 Gferi_RS04405 3b19f6e65812ea3ec7089d4897b17c99 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 2.0E-38 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS04405 3b19f6e65812ea3ec7089d4897b17c99 148 Gene3D G3DSA:3.40.930.10 1 148 7.3E-52 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS04405 3b19f6e65812ea3ec7089d4897b17c99 148 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS04405 3b19f6e65812ea3ec7089d4897b17c99 148 SUPERFAMILY SSF55804 1 147 2.88E-41 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS03250 36b160c0c2096832857a012af0eb35a3 294 SUPERFAMILY SSF103481 40 141 8.24E-14 T 11-11-2016 Gferi_RS03250 36b160c0c2096832857a012af0eb35a3 294 SUPERFAMILY SSF103481 207 285 5.89E-13 T 11-11-2016 Gferi_RS03250 36b160c0c2096832857a012af0eb35a3 294 Pfam PF00892 EamA-like transporter family 5 139 8.3E-19 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS03250 36b160c0c2096832857a012af0eb35a3 294 Pfam PF00892 EamA-like transporter family 149 282 1.9E-21 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS07330 85362a1f4e9a53ca39dbd72785fe3979 158 Gene3D G3DSA:3.90.960.10 1 153 2.9E-42 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS07330 85362a1f4e9a53ca39dbd72785fe3979 158 SUPERFAMILY SSF55826 4 145 2.22E-34 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS07330 85362a1f4e9a53ca39dbd72785fe3979 158 Pfam PF04073 Aminoacyl-tRNA editing domain 25 141 7.6E-24 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Gferi_RS08415 f959b6c7975e6ba844b17516be84d03e 167 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 10 151 3.8E-16 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 Gferi_RS07245 0646d17c70855005fa69031b9b837fa1 418 Gene3D G3DSA:2.40.50.100 71 96 3.4E-10 T 11-11-2016 Gferi_RS07245 0646d17c70855005fa69031b9b837fa1 418 Gene3D G3DSA:2.40.50.100 235 266 3.4E-10 T 11-11-2016 Gferi_RS07245 0646d17c70855005fa69031b9b837fa1 418 Pfam PF13437 HlyD family secretion protein 237 324 2.4E-8 T 11-11-2016 Gferi_RS07245 0646d17c70855005fa69031b9b837fa1 418 SUPERFAMILY SSF111369 162 317 5.62E-5 T 11-11-2016 Gferi_RS07245 0646d17c70855005fa69031b9b837fa1 418 SUPERFAMILY SSF111369 52 150 2.62E-5 T 11-11-2016 Gferi_RS07245 0646d17c70855005fa69031b9b837fa1 418 Pfam PF13533 Biotin-lipoyl like 71 103 2.0E-7 T 11-11-2016 Gferi_RS26180 c0c2062a522d69574eeb7dfbd7912d84 187 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 79 107 - T 11-11-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Gferi_RS26180 c0c2062a522d69574eeb7dfbd7912d84 187 Pfam PF01464 Transglycosylase SLT domain 61 165 5.0E-31 T 11-11-2016 IPR008258 Transglycosylase SLT domain 1 Gferi_RS26180 c0c2062a522d69574eeb7dfbd7912d84 187 Gene3D G3DSA:1.10.530.10 38 182 2.3E-51 T 11-11-2016 Gferi_RS26180 c0c2062a522d69574eeb7dfbd7912d84 187 SUPERFAMILY SSF53955 55 180 2.0E-47 T 11-11-2016 IPR023346 Lysozyme-like domain Gferi_RS07385 5c1f052acb086b67426162a76913ba07 245 SUPERFAMILY SSF53448 4 226 2.12E-38 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS07385 5c1f052acb086b67426162a76913ba07 245 Pfam PF00535 Glycosyl transferase family 2 6 168 1.6E-33 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS07385 5c1f052acb086b67426162a76913ba07 245 Gene3D G3DSA:3.90.550.10 4 169 1.5E-30 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS03665 adcb21a6e1590c7ebf8e314e2e23530d 111 Pfam PF05713 Bacterial mobilisation protein (MobC) 62 97 3.9E-5 T 11-11-2016 IPR008687 Bacterial mobilisation Gferi_RS02385 15ef9429cdbaa386f915a21627466aee 324 Gene3D G3DSA:3.40.50.1450 1 323 2.4E-129 T 11-11-2016 IPR023430 Peptidase HybD-like domain Gferi_RS02385 15ef9429cdbaa386f915a21627466aee 324 Pfam PF03418 Germination protease 253 322 9.6E-16 T 11-11-2016 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 Gferi_RS02385 15ef9429cdbaa386f915a21627466aee 324 Pfam PF03418 Germination protease 9 252 1.9E-87 T 11-11-2016 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 Gferi_RS02385 15ef9429cdbaa386f915a21627466aee 324 ProDom PD041835 PROTEASE GERMINATION HYDROLASE SPORE GPR ENDOPEPTIDASE PROTEINASE ZYMOGEN PRECURSOR PEPTIDASE 2 306 3.0E-106 T 11-11-2016 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 Gferi_RS02385 15ef9429cdbaa386f915a21627466aee 324 Hamap MF_00626 Germination protease [gpr]. 1 324 149.765 T 11-11-2016 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 Gferi_RS02385 15ef9429cdbaa386f915a21627466aee 324 SUPERFAMILY SSF53163 1 323 2.49E-112 T 11-11-2016 IPR023430 Peptidase HybD-like domain Gferi_RS02385 15ef9429cdbaa386f915a21627466aee 324 TIGRFAM TIGR01441 GPR: GPR endopeptidase 3 249 2.4E-92 T 11-11-2016 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 Gferi_RS24400 184ac6ce4dbdcd828035e8d08ec0b2f8 43 Pfam PF04723 Glycine reductase complex selenoprotein A 5 43 5.0E-19 T 11-11-2016 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 Gferi_RS24280 e54759533deaae0f24b4973d42a43587 246 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 212 2.5E-42 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24280 e54759533deaae0f24b4973d42a43587 246 Gene3D G3DSA:3.30.950.10 118 230 2.3E-12 T 11-11-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24280 e54759533deaae0f24b4973d42a43587 246 SUPERFAMILY SSF53790 3 244 1.57E-62 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS24280 e54759533deaae0f24b4973d42a43587 246 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 7 244 1.2E-100 T 11-11-2016 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 Gferi_RS24280 e54759533deaae0f24b4973d42a43587 246 Gene3D G3DSA:3.40.1010.10 4 117 6.3E-37 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 Gferi_RS17545 cb0165b07a61c03000ed65968bf249bc 113 SUPERFAMILY SSF64263 3 113 1.57E-48 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17545 cb0165b07a61c03000ed65968bf249bc 113 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 2 113 29.408 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17545 cb0165b07a61c03000ed65968bf249bc 113 Pfam PF01196 Ribosomal protein L17 17 113 1.8E-41 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17545 cb0165b07a61c03000ed65968bf249bc 113 Gene3D G3DSA:3.90.1030.10 3 113 1.4E-52 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17545 cb0165b07a61c03000ed65968bf249bc 113 TIGRFAM TIGR00059 L17: ribosomal protein bL17 4 113 6.1E-48 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 SUPERFAMILY SSF88723 3 64 9.22E-11 T 11-11-2016 IPR029060 PIN domain-like Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 SUPERFAMILY SSF88723 94 149 9.22E-11 T 11-11-2016 IPR029060 PIN domain-like Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 Pfam PF02562 PhoH-like protein 225 454 3.7E-48 T 11-11-2016 IPR003714 PhoH-like protein GO:0005524 Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 SMART SM00670 3 131 2.0E-8 T 11-11-2016 IPR002716 PIN domain Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 SUPERFAMILY SSF52540 147 190 9.81E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 SUPERFAMILY SSF52540 359 436 9.81E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 SUPERFAMILY SSF52540 224 310 9.81E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 Pfam PF13638 PIN domain 5 144 4.4E-28 T 11-11-2016 IPR002716 PIN domain Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 Gene3D G3DSA:3.40.50.1010 3 149 4.9E-13 T 11-11-2016 IPR029060 PIN domain-like Gferi_RS19985 7efe35b6f293e8964917e5ef21d47c3d 456 Gene3D G3DSA:3.40.50.300 223 454 3.7E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 Gene3D G3DSA:3.30.565.10 323 466 9.9E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 SMART SM00091 128 195 9.5E-4 T 11-11-2016 IPR000014 PAS domain Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 SMART SM00387 362 469 1.2E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 Pfam PF00512 His Kinase A (phospho-acceptor) domain 254 316 8.0E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 466 1.5E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 1.5E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 1.5E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 1.5E-19 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 467 5.2E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 Gene3D G3DSA:1.10.287.130 250 316 1.8E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 SUPERFAMILY SSF55874 314 467 5.37E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 Gene3D G3DSA:3.30.450.20 127 237 4.1E-12 T 11-11-2016 Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 SUPERFAMILY SSF55785 123 237 4.42E-7 T 11-11-2016 IPR000014 PAS domain Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 SUPERFAMILY SSF47384 247 318 2.35E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS06160 2e58b5b981ac5dea2fbea64a940794c5 475 SMART SM00388 254 320 5.8E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS02845 51291a4729e97a9bdbf9578010fe7c8c 438 PIRSF PIRSF006351 1 438 6.6E-135 T 11-11-2016 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 Gferi_RS02845 51291a4729e97a9bdbf9578010fe7c8c 438 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 432 1.3E-128 T 11-11-2016 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 Gferi_RS02845 51291a4729e97a9bdbf9578010fe7c8c 438 Pfam PF02378 Phosphotransferase system, EIIC 29 358 5.9E-61 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS20720 7f61f10ef402554153a98e386899b9bc 81 TIGRFAM TIGR03959 hyd_TM1266: putative iron-only hydrogenase system regulator 4 78 1.3E-35 T 11-11-2016 IPR023860 [FeFe]-hydrogenase system regulator TM1266 Gferi_RS20720 7f61f10ef402554153a98e386899b9bc 81 Gene3D G3DSA:3.30.70.1150 1 80 2.1E-35 T 11-11-2016 Gferi_RS20720 7f61f10ef402554153a98e386899b9bc 81 SUPERFAMILY SSF55021 3 78 1.28E-25 T 11-11-2016 Gferi_RS12660 c9be3741e9dcbcfa0354dc62be6fc3c7 70 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 6 30 - T 11-11-2016 IPR001455 TusA-like domain Gferi_RS12660 c9be3741e9dcbcfa0354dc62be6fc3c7 70 Pfam PF01206 Sulfurtransferase TusA 4 70 5.4E-16 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS12660 c9be3741e9dcbcfa0354dc62be6fc3c7 70 Gene3D G3DSA:3.30.110.40 4 70 4.3E-17 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS12660 c9be3741e9dcbcfa0354dc62be6fc3c7 70 SUPERFAMILY SSF64307 4 70 1.27E-13 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS03395 98f4874c266b397eb269eeb2032ad78d 359 PIRSF PIRSF006470 26 352 1.6E-71 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS03395 98f4874c266b397eb269eeb2032ad78d 359 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 50 307 2.4E-56 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 Gferi_RS03395 98f4874c266b397eb269eeb2032ad78d 359 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 50 334 2.2E-76 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS12700 6d00718b9818d4c62c57df2be6a9f412 178 Gene3D G3DSA:1.10.10.10 121 174 1.4E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12700 6d00718b9818d4c62c57df2be6a9f412 178 SUPERFAMILY SSF88659 118 176 8.97E-10 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS12700 6d00718b9818d4c62c57df2be6a9f412 178 Pfam PF16509 TrfB plasmid transcriptional repressor 120 170 4.8E-8 T 11-11-2016 IPR032428 TrfB transcriptional repressor protein Gferi_RS11420 5393e225a526e0410e8c4026fb1a6dea 494 Gene3D G3DSA:1.20.1600.10 179 486 2.2E-14 T 11-11-2016 Gferi_RS11420 5393e225a526e0410e8c4026fb1a6dea 494 Pfam PF07833 Copper amine oxidase N-terminal domain 51 143 7.9E-33 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11420 5393e225a526e0410e8c4026fb1a6dea 494 SUPERFAMILY SSF55383 54 138 1.83E-28 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11420 5393e225a526e0410e8c4026fb1a6dea 494 SUPERFAMILY SSF56954 169 488 1.11E-25 T 11-11-2016 Gferi_RS11420 5393e225a526e0410e8c4026fb1a6dea 494 Gene3D G3DSA:3.30.457.10 125 149 4.3E-9 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11420 5393e225a526e0410e8c4026fb1a6dea 494 Gene3D G3DSA:3.30.457.10 55 124 3.6E-29 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11420 5393e225a526e0410e8c4026fb1a6dea 494 Pfam PF02321 Outer membrane efflux protein 218 327 1.3E-8 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 Gferi_RS21765 a962f2317acf7f9b9fbc8726eaf1feba 248 SUPERFAMILY SSF52540 3 220 8.58E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21765 a962f2317acf7f9b9fbc8726eaf1feba 248 Gene3D G3DSA:3.40.50.300 2 220 1.1E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21765 a962f2317acf7f9b9fbc8726eaf1feba 248 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS21765 a962f2317acf7f9b9fbc8726eaf1feba 248 Pfam PF00005 ABC transporter 21 158 4.6E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS21765 a962f2317acf7f9b9fbc8726eaf1feba 248 SMART SM00382 29 206 4.1E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11925 7105fce9ceb901c2b62f9f1235cf23ba 350 SUPERFAMILY SSF51126 130 310 1.34E-21 T 11-11-2016 IPR011050 Pectin lyase fold/virulence factor Gferi_RS11925 7105fce9ceb901c2b62f9f1235cf23ba 350 Gene3D G3DSA:2.160.20.10 123 295 1.5E-15 T 11-11-2016 IPR012334 Pectin lyase fold Gferi_RS07690 5d1c0d0cd208f4f3e5d34337a32ccb1d 263 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 244 7.2E-25 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07690 5d1c0d0cd208f4f3e5d34337a32ccb1d 263 SUPERFAMILY SSF161098 54 242 1.26E-32 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07690 5d1c0d0cd208f4f3e5d34337a32ccb1d 263 Gene3D G3DSA:1.10.3720.10 53 247 3.4E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS25655 a81fd1725fe5f7ccd66e554b723a5e5d 158 SUPERFAMILY SSF55804 17 153 7.98E-37 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 Gferi_RS25655 a81fd1725fe5f7ccd66e554b723a5e5d 158 Gene3D G3DSA:3.40.930.10 19 154 9.4E-40 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS25655 a81fd1725fe5f7ccd66e554b723a5e5d 158 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 20 153 2.7E-32 T 11-11-2016 IPR002178 PTS EIIA type-2 domain Gferi_RS22765 7b452d12f1b3c91e17f39e987fe4606b 300 Pfam PF14336 Domain of unknown function (DUF4392) 9 281 8.0E-84 T 11-11-2016 IPR025504 Domain of unknown function DUF4392 Gferi_RS15430 8ebdcf6b92203fef031ab82b72e49bb3 464 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 6 459 5.6E-93 T 11-11-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 Gferi_RS13945 6794d6ac7f2acbda454d0a7346a670c7 316 Gene3D G3DSA:3.90.25.10 181 312 7.6E-16 T 11-11-2016 Gferi_RS13945 6794d6ac7f2acbda454d0a7346a670c7 316 SUPERFAMILY SSF51735 2 314 8.36E-68 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS13945 6794d6ac7f2acbda454d0a7346a670c7 316 Gene3D G3DSA:3.40.50.720 4 180 4.3E-43 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS13945 6794d6ac7f2acbda454d0a7346a670c7 316 Pfam PF16363 GDP-mannose 4,6 dehydratase 8 310 1.0E-42 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS26925 27db1a8249428961fc36029a79d56f23 413 Pfam PF01136 Peptidase family U32 75 309 4.7E-100 T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Gferi_RS26925 27db1a8249428961fc36029a79d56f23 413 ProSitePatterns PS01276 Peptidase family U32 signature. 163 181 - T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Gferi_RS26925 27db1a8249428961fc36029a79d56f23 413 Pfam PF16325 Peptidase family U32 C-terminal domain 322 404 2.2E-27 T 11-11-2016 IPR032525 Peptidase family U32, C-terminal Gferi_RS05990 96913e39f47a12fc93aa17ff06a09469 252 Gene3D G3DSA:1.10.101.10 32 100 8.3E-18 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS05990 96913e39f47a12fc93aa17ff06a09469 252 SUPERFAMILY SSF47090 34 99 3.92E-17 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS05990 96913e39f47a12fc93aa17ff06a09469 252 Pfam PF01471 Putative peptidoglycan binding domain 43 97 4.6E-14 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS17570 601114f501d206b91ceb3f066d6f0062 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 30.0 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17570 601114f501d206b91ceb3f066d6f0062 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 5 142 3.2E-64 T 11-11-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS17570 601114f501d206b91ceb3f066d6f0062 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 11-11-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 Gferi_RS17570 601114f501d206b91ceb3f066d6f0062 142 Gene3D G3DSA:3.90.1180.10 4 141 7.4E-66 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17570 601114f501d206b91ceb3f066d6f0062 142 Pfam PF00572 Ribosomal protein L13 14 138 1.1E-59 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17570 601114f501d206b91ceb3f066d6f0062 142 PIRSF PIRSF002181 1 142 3.3E-54 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Gferi_RS17570 601114f501d206b91ceb3f066d6f0062 142 SUPERFAMILY SSF52161 1 140 5.1E-61 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Gferi_RS27060 f725db536267b3cda76b3c3328275723 311 Pfam PF01944 Stage II sporulation protein M 111 283 2.9E-33 T 11-11-2016 IPR002798 Stage II sporulation protein M-like Gferi_RS11755 3cea9a2f79945553e3f18170b12ba265 201 Pfam PF12672 Protein of unknown function (DUF3793) 28 192 9.2E-35 T 11-11-2016 IPR024523 Protein of unknown function DUF3793 Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 86 3.8E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 3.7E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 3.7E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 Gene3D G3DSA:1.10.10.10 14 86 3.6E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 SMART SM00345 27 86 1.2E-12 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 Gene3D G3DSA:3.40.640.10 160 368 4.2E-69 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 SUPERFAMILY SSF46785 17 92 6.45E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 Gene3D G3DSA:3.90.1150.10 369 487 2.3E-8 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 Pfam PF00155 Aminotransferase class I and II 130 475 1.3E-27 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS06740 679d430df95f0b8658f0a08a8865870b 488 SUPERFAMILY SSF53383 111 487 1.02E-87 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 15 269 32.57 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 PIRSF PIRSF000513 9 273 3.4E-89 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 15 257 2.0E-86 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 Pfam PF02110 Hydroxyethylthiazole kinase family 15 257 5.4E-81 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 91 108 6.5E-39 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 34 55 6.5E-39 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 122 136 6.5E-39 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 167 184 6.5E-39 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 21 28 6.5E-39 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 65 73 6.5E-39 T 11-11-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 Gene3D G3DSA:3.40.1190.20 12 271 6.6E-88 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS10045 f900a9faf40ae8dc3b8a31b004830e89 273 SUPERFAMILY SSF53613 12 269 2.13E-58 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS24785 d4f2b530ae8a5ed43329383cda54cc8c 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 307 3.2E-36 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24785 d4f2b530ae8a5ed43329383cda54cc8c 309 Gene3D G3DSA:1.10.3720.10 90 306 5.3E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24785 d4f2b530ae8a5ed43329383cda54cc8c 309 SUPERFAMILY SSF161098 93 290 6.93E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06120 369cbd2cce7fa6f10e0ed0998a594686 410 PIRSF PIRSF001434 1 410 7.1E-117 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS06120 369cbd2cce7fa6f10e0ed0998a594686 410 Gene3D G3DSA:3.90.1150.10 275 410 1.4E-38 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS06120 369cbd2cce7fa6f10e0ed0998a594686 410 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 408 3.9E-119 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Gferi_RS06120 369cbd2cce7fa6f10e0ed0998a594686 410 SUPERFAMILY SSF53383 1 408 9.93E-97 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS06120 369cbd2cce7fa6f10e0ed0998a594686 410 Gene3D G3DSA:3.40.640.10 2 273 1.2E-90 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS24290 ba222fb2abf68273a38751ce85532fd6 212 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 5 190 2.7E-47 T 11-11-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Gferi_RS24290 ba222fb2abf68273a38751ce85532fd6 212 Pfam PF14824 Sirohaem biosynthesis protein central 120 146 4.7E-14 T 11-11-2016 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Gferi_RS24290 ba222fb2abf68273a38751ce85532fd6 212 Gene3D G3DSA:3.30.160.110 114 148 6.0E-14 T 11-11-2016 Gferi_RS24290 ba222fb2abf68273a38751ce85532fd6 212 SUPERFAMILY SSF75615 109 192 2.88E-23 T 11-11-2016 Gferi_RS24290 ba222fb2abf68273a38751ce85532fd6 212 Pfam PF13241 Putative NAD(P)-binding 7 116 8.8E-30 T 11-11-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 Gferi_RS24290 ba222fb2abf68273a38751ce85532fd6 212 Gene3D G3DSA:3.40.50.720 3 113 1.9E-36 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS24290 ba222fb2abf68273a38751ce85532fd6 212 SUPERFAMILY SSF51735 4 113 2.44E-23 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS01505 e569886b907b21586ed55bb14562d908 248 SUPERFAMILY SSF75217 1 229 1.05E-100 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases Gferi_RS01505 e569886b907b21586ed55bb14562d908 248 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 226 1.4E-99 T 11-11-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Gferi_RS01505 e569886b907b21586ed55bb14562d908 248 Gene3D G3DSA:1.10.1270.20 159 245 3.0E-31 T 11-11-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Gferi_RS01505 e569886b907b21586ed55bb14562d908 248 Gene3D G3DSA:3.40.1280.10 1 157 2.0E-70 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Gferi_RS01505 e569886b907b21586ed55bb14562d908 248 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 218 7.6E-72 T 11-11-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Gferi_RS01505 e569886b907b21586ed55bb14562d908 248 PIRSF PIRSF000386 1 248 1.7E-104 T 11-11-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Gferi_RS01505 e569886b907b21586ed55bb14562d908 248 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 248 108.087 T 11-11-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Gferi_RS04600 8ea5bde03611b931ece807e00bacbfdf 273 SUPERFAMILY SSF52402 1 230 2.65E-36 T 11-11-2016 Gferi_RS04600 8ea5bde03611b931ece807e00bacbfdf 273 Pfam PF01012 Electron transfer flavoprotein domain 32 219 2.3E-16 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS04600 8ea5bde03611b931ece807e00bacbfdf 273 SMART SM00893 26 224 1.2E-11 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS04600 8ea5bde03611b931ece807e00bacbfdf 273 Gene3D G3DSA:3.40.50.620 1 268 7.5E-42 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS04015 b4ff67b92941e9a4111f634578ef2bd9 288 SMART SM00729 15 233 7.7E-32 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS04015 b4ff67b92941e9a4111f634578ef2bd9 288 Gene3D G3DSA:3.80.30.20 15 214 5.4E-27 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS04015 b4ff67b92941e9a4111f634578ef2bd9 288 SUPERFAMILY SSF102114 4 241 3.53E-37 T 11-11-2016 Gferi_RS04015 b4ff67b92941e9a4111f634578ef2bd9 288 Pfam PF04055 Radical SAM superfamily 20 174 1.8E-14 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS26335 bb8dcb0af9da2ece92a9e185116be2e7 290 Pfam PF02163 Peptidase family M50 113 164 4.0E-8 T 11-11-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 Gferi_RS26335 bb8dcb0af9da2ece92a9e185116be2e7 290 Pfam PF02163 Peptidase family M50 37 103 2.3E-8 T 11-11-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 Gferi_RS23020 f259ca6c319261eece9aee7675a27e52 211 Pfam PF14344 Domain of unknown function (DUF4397) 17 131 1.0E-30 T 11-11-2016 IPR025510 Domain of unknown function DUF4397 Gferi_RS16015 f09ce6e1a287d5b73021469c5aaacff5 127 Pfam PF02661 Fic/DOC family 5 79 2.2E-9 T 11-11-2016 IPR003812 Fido domain Gferi_RS16015 f09ce6e1a287d5b73021469c5aaacff5 127 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 5 121 9.2E-15 T 11-11-2016 IPR006440 Death on curing protein GO:0016301 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 185 200 - T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 60 256 3.4E-88 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 77 97 9.0E-65 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 97 116 9.0E-65 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 230 255 9.0E-65 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 206 227 9.0E-65 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 58 77 9.0E-65 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 185 205 9.0E-65 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 116 128 1.6E-19 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 56 65 1.6E-19 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 156 168 1.6E-19 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 178 190 1.6E-19 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 246 256 1.6E-19 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 128 142 1.6E-19 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 Pfam PF00813 FliP family 60 252 3.7E-83 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00895 2dc6001c586110a0df6497c8e8ad118a 257 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 233 245 - T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 Gferi_RS00300 b5c6dff8ab253bf4b7d26c7eaa616c0a 130 Pfam PF03780 Asp23 family, cell envelope-related function 10 114 4.8E-41 T 11-11-2016 IPR005531 Alkaline shock protein Asp23 Gferi_RS11005 21823dd6293455704d6bef4ceadee049 217 Pfam PF04203 Sortase family 93 215 2.9E-33 T 11-11-2016 IPR005754 Sortase family Gferi_RS11005 21823dd6293455704d6bef4ceadee049 217 TIGRFAM TIGR01076 sortase_fam: sortase 91 214 2.6E-26 T 11-11-2016 IPR005754 Sortase family Gferi_RS11005 21823dd6293455704d6bef4ceadee049 217 Gene3D G3DSA:2.40.260.10 88 216 4.4E-39 T 11-11-2016 IPR023365 Sortase domain Gferi_RS11005 21823dd6293455704d6bef4ceadee049 217 SUPERFAMILY SSF63817 85 217 2.62E-38 T 11-11-2016 IPR023365 Sortase domain Gferi_RS15425 088b2b671e2a5d1d5894ca978df01cb7 481 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 7 473 6.2E-86 T 11-11-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 Gferi_RS15875 ac4a4952eccc048c05da2aabefffa895 217 SMART SM00877 34 120 1.6E-9 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15875 ac4a4952eccc048c05da2aabefffa895 217 SMART SM00877 145 214 1.6E-7 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15875 ac4a4952eccc048c05da2aabefffa895 217 TIGRFAM TIGR04502 microcomp_EutL: microcompartment protein EutL 4 216 1.6E-112 T 11-11-2016 IPR030983 Ethanolamine utilization protein EutL GO:0005198 Gferi_RS15875 ac4a4952eccc048c05da2aabefffa895 217 SUPERFAMILY SSF143414 155 208 3.79E-5 T 11-11-2016 Gferi_RS15875 ac4a4952eccc048c05da2aabefffa895 217 Pfam PF00936 BMC domain 35 106 1.6E-13 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15875 ac4a4952eccc048c05da2aabefffa895 217 PIRSF PIRSF012290 1 217 2.1E-84 T 11-11-2016 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0009605 Gferi_RS15875 ac4a4952eccc048c05da2aabefffa895 217 SUPERFAMILY SSF143414 34 108 5.23E-5 T 11-11-2016 Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 SUPERFAMILY SSF69189 283 371 6.47E-6 T 11-11-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 283 372 4.2E-6 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 Gene3D G3DSA:3.40.710.10 12 280 2.7E-85 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 Gene3D G3DSA:2.60.410.10 284 369 5.1E-6 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 SMART SM00936 283 372 5.4E-5 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 SUPERFAMILY SSF56601 2 281 8.38E-71 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 24 263 7.8E-60 T 11-11-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 111 128 1.2E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 138 151 1.2E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS12740 3dc24f364564c0f666f5d063e8632c5b 399 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 58 69 1.2E-15 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 Gferi_RS23645 2b9ac4c825bb93d1e8a898cf611a696a 840 SUPERFAMILY SSF49899 15 179 1.87E-5 T 11-11-2016 IPR013320 Concanavalin A-like lectin/glucanase domain Gferi_RS23645 2b9ac4c825bb93d1e8a898cf611a696a 840 Pfam PF06605 Prophage endopeptidase tail 418 716 2.6E-58 T 11-11-2016 IPR010572 Prophage tail endopeptidase Gferi_RS23645 2b9ac4c825bb93d1e8a898cf611a696a 840 Gene3D G3DSA:2.60.120.200 18 174 5.5E-8 T 11-11-2016 IPR013320 Concanavalin A-like lectin/glucanase domain Gferi_RS23645 2b9ac4c825bb93d1e8a898cf611a696a 840 TIGRFAM TIGR01665 put_anti_recept: phage minor structural protein, N-terminal region 413 700 2.5E-34 T 11-11-2016 IPR007119 Phage minor structural protein, N-terminal domain Gferi_RS25815 2370d26cd0199105933834ff34467e8f 187 Pfam PF13563 2'-5' RNA ligase superfamily 39 151 1.7E-6 T 11-11-2016 Gferi_RS25815 2370d26cd0199105933834ff34467e8f 187 SUPERFAMILY SSF55144 6 172 5.49E-15 T 11-11-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase Gferi_RS25815 2370d26cd0199105933834ff34467e8f 187 Gene3D G3DSA:3.90.1140.10 39 168 8.3E-8 T 11-11-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase Gferi_RS14050 af1ec392a756d2d875562faa6e09e4f3 324 Gene3D G3DSA:3.40.50.1820 45 321 2.6E-38 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14050 af1ec392a756d2d875562faa6e09e4f3 324 SUPERFAMILY SSF53474 50 321 9.67E-39 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14050 af1ec392a756d2d875562faa6e09e4f3 324 Pfam PF00561 alpha/beta hydrolase fold 70 306 2.1E-13 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS14050 af1ec392a756d2d875562faa6e09e4f3 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 152 165 1.6E-6 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS14050 af1ec392a756d2d875562faa6e09e4f3 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 138 151 1.6E-6 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS14050 af1ec392a756d2d875562faa6e09e4f3 324 PRINTS PR00111 Alpha/beta hydrolase fold signature 267 281 1.6E-6 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS14260 1fd3cc8fbe966d4c9dc68fe565068c8b 224 Pfam PF04012 PspA/IM30 family 3 219 9.1E-35 T 11-11-2016 IPR007157 PspA/IM30 Gferi_RS22550 41dadff200fcb1e5de14a346ab68c344 444 Gene3D G3DSA:1.10.10.10 363 419 2.1E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05785 ca42b7feeea52d422d915e78bbf46bd7 388 Gene3D G3DSA:3.40.50.2300 74 153 2.7E-6 T 11-11-2016 Gferi_RS05785 ca42b7feeea52d422d915e78bbf46bd7 388 SUPERFAMILY SSF53822 35 381 6.36E-88 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS05785 ca42b7feeea52d422d915e78bbf46bd7 388 Gene3D G3DSA:3.40.50.2300 154 327 6.4E-46 T 11-11-2016 Gferi_RS05785 ca42b7feeea52d422d915e78bbf46bd7 388 Pfam PF13458 Periplasmic binding protein 37 377 6.5E-59 T 11-11-2016 IPR028081 Leucine-binding protein domain Gferi_RS05145 55281313d746c9fa97b2ced51776219e 292 SMART SM00481 2 69 3.4E-17 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS05145 55281313d746c9fa97b2ced51776219e 292 Pfam PF02811 PHP domain 3 181 3.4E-9 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS05145 55281313d746c9fa97b2ced51776219e 292 SUPERFAMILY SSF89550 176 265 1.57E-37 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS05145 55281313d746c9fa97b2ced51776219e 292 SUPERFAMILY SSF89550 1 82 1.57E-37 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS05145 55281313d746c9fa97b2ced51776219e 292 Gene3D G3DSA:3.20.20.140 126 127 5.2E-34 T 11-11-2016 Gferi_RS05145 55281313d746c9fa97b2ced51776219e 292 Gene3D G3DSA:3.20.20.140 175 269 5.2E-34 T 11-11-2016 Gferi_RS05145 55281313d746c9fa97b2ced51776219e 292 Gene3D G3DSA:3.20.20.140 1 87 5.2E-34 T 11-11-2016 Gferi_RS17885 f3c03bb5fa803f34d8760b63ccbc3472 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 119 1.4E-13 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Gferi_RS17885 f3c03bb5fa803f34d8760b63ccbc3472 128 SUPERFAMILY SSF54593 2 124 1.51E-23 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS17885 f3c03bb5fa803f34d8760b63ccbc3472 128 Gene3D G3DSA:3.10.180.10 2 124 2.6E-23 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS17080 f6a8c8f24f01a36ff5bddf7217359109 148 SMART SM00448 10 132 3.9E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS17080 f6a8c8f24f01a36ff5bddf7217359109 148 SUPERFAMILY SSF52172 9 138 3.56E-31 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS17080 f6a8c8f24f01a36ff5bddf7217359109 148 Gene3D G3DSA:3.40.50.2300 6 138 8.8E-34 T 11-11-2016 Gferi_RS17080 f6a8c8f24f01a36ff5bddf7217359109 148 Pfam PF00072 Response regulator receiver domain 12 132 8.0E-21 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS22665 dae84919759695369702253e7af60cd8 970 SUPERFAMILY SSF51445 63 329 3.4E-28 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS22665 dae84919759695369702253e7af60cd8 970 SMART SM00646 847 959 7.8E-19 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS22665 dae84919759695369702253e7af60cd8 970 Gene3D G3DSA:3.20.20.80 181 290 8.1E-6 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS22665 dae84919759695369702253e7af60cd8 970 SUPERFAMILY SSF53187 784 964 1.26E-44 T 11-11-2016 Gferi_RS22665 dae84919759695369702253e7af60cd8 970 Pfam PF02638 Glycosyl hydrolase-like 10 34 350 9.8E-76 T 11-11-2016 IPR003790 Glycosyl hydrolase-like 10 Gferi_RS22665 dae84919759695369702253e7af60cd8 970 Gene3D G3DSA:3.40.630.40 783 963 7.7E-49 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS22665 dae84919759695369702253e7af60cd8 970 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 786 959 3.8E-43 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS07915 bf88ddd95fd3152b087ea865f54b8139 424 Gene3D G3DSA:1.20.1250.20 209 406 1.5E-9 T 11-11-2016 Gferi_RS07915 bf88ddd95fd3152b087ea865f54b8139 424 Gene3D G3DSA:1.20.1250.20 8 192 9.4E-21 T 11-11-2016 Gferi_RS07915 bf88ddd95fd3152b087ea865f54b8139 424 Pfam PF07690 Major Facilitator Superfamily 14 368 5.4E-27 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS07915 bf88ddd95fd3152b087ea865f54b8139 424 SUPERFAMILY SSF103473 8 406 3.79E-37 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS08595 1170e60cc608e329597d92cc84a8c1d7 365 Pfam PF03845 Spore germination protein 3 323 4.0E-87 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS08595 1170e60cc608e329597d92cc84a8c1d7 365 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 3 361 8.6E-71 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS26725 bab1961d32fc9f52c2b65e4bb2bf2f9b 243 Pfam PF06738 Putative threonine/serine exporter 1 234 5.8E-74 T 11-11-2016 IPR010619 Putative threonine/serine exporter Gferi_RS05745 b454708ad13707e44c91b1a736d0eb2f 210 Gene3D G3DSA:3.60.21.10 34 162 6.1E-10 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS05745 b454708ad13707e44c91b1a736d0eb2f 210 SUPERFAMILY SSF56300 34 151 2.63E-16 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS05745 b454708ad13707e44c91b1a736d0eb2f 210 Pfam PF00149 Calcineurin-like phosphoesterase 34 174 9.1E-10 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS20255 d9035e9f9f82467e38df43625a14017f 178 SUPERFAMILY SSF49329 21 157 3.14E-39 T 11-11-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS20255 d9035e9f9f82467e38df43625a14017f 178 Gene3D G3DSA:2.60.40.200 21 157 3.7E-42 T 11-11-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS20255 d9035e9f9f82467e38df43625a14017f 178 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 145 156 - T 11-11-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS20255 d9035e9f9f82467e38df43625a14017f 178 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 21 156 1.3E-34 T 11-11-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 Gferi_RS08785 a80d31feb90fa4a5ee5d79ec0505bd54 698 SUPERFAMILY SSF101478 4 317 4.18E-37 T 11-11-2016 IPR005502 ADP-ribosylation/Crystallin J1 Gferi_RS08785 a80d31feb90fa4a5ee5d79ec0505bd54 698 Pfam PF03747 ADP-ribosylglycohydrolase 13 304 3.6E-50 T 11-11-2016 IPR005502 ADP-ribosylation/Crystallin J1 Gferi_RS26085 f94b563665d8b08835464cc409298a68 449 SUPERFAMILY SSF53720 20 275 4.19E-66 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS26085 f94b563665d8b08835464cc409298a68 449 SUPERFAMILY SSF53720 304 440 4.19E-66 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS26085 f94b563665d8b08835464cc409298a68 449 PIRSF PIRSF036410 2 449 1.1E-209 T 11-11-2016 IPR012408 Acetaldehyde/propionaldehyde dehydrogenase, EutE/PduP-related Gferi_RS26085 f94b563665d8b08835464cc409298a68 449 Gene3D G3DSA:3.40.605.10 18 235 1.8E-26 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS26085 f94b563665d8b08835464cc409298a68 449 Gene3D G3DSA:3.40.309.10 236 408 5.8E-26 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS26085 f94b563665d8b08835464cc409298a68 449 Pfam PF00171 Aldehyde dehydrogenase family 19 403 8.9E-34 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS20550 b74c8e695266aa91d60b60ce50969391 288 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 227 281 4.7E-23 T 11-11-2016 IPR019264 Domain of unknown function DUF2179 Gferi_RS20550 b74c8e695266aa91d60b60ce50969391 288 PIRSF PIRSF006483 3 288 5.7E-90 T 11-11-2016 IPR003740 Uncharacterised membrane protein YitT Gferi_RS20550 b74c8e695266aa91d60b60ce50969391 288 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 12 221 4.1E-66 T 11-11-2016 IPR003740 Uncharacterised membrane protein YitT Gferi_RS21645 8e4ddb6acf2ff440beab0ddf06adedc1 361 Pfam PF12705 PD-(D/E)XK nuclease superfamily 17 271 1.3E-13 T 11-11-2016 Gferi_RS21645 8e4ddb6acf2ff440beab0ddf06adedc1 361 SUPERFAMILY SSF52980 47 195 2.57E-6 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Gferi_RS23605 d66e2ab765587d3210dc4504a6ebb2e9 102 TIGRFAM TIGR01560 put_DNA_pack: uncharacterized phage protein (possible DNA packaging) 4 75 1.3E-6 T 11-11-2016 IPR006450 Phage protein of unkonwn function Gferi_RS23605 d66e2ab765587d3210dc4504a6ebb2e9 102 Pfam PF05135 Phage gp6-like head-tail connector protein 3 72 3.9E-12 T 11-11-2016 IPR021146 Phage gp6-like head-tail connector protein Gferi_RS26350 7c8bcdedfc6ab6e282266c0dd9a1992a 504 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 423 4.1E-154 T 11-11-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Gferi_RS26350 7c8bcdedfc6ab6e282266c0dd9a1992a 504 Pfam PF10150 Ribonuclease E/G family 121 390 3.2E-104 T 11-11-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Gferi_RS26350 7c8bcdedfc6ab6e282266c0dd9a1992a 504 SMART SM00316 36 119 8.8E-7 T 11-11-2016 IPR022967 RNA-binding domain, S1 Gferi_RS26350 7c8bcdedfc6ab6e282266c0dd9a1992a 504 Pfam PF00575 S1 RNA binding domain 36 107 4.1E-6 T 11-11-2016 IPR003029 S1 domain GO:0003676 Gferi_RS26350 7c8bcdedfc6ab6e282266c0dd9a1992a 504 SUPERFAMILY SSF50249 38 125 4.33E-19 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS26350 7c8bcdedfc6ab6e282266c0dd9a1992a 504 Gene3D G3DSA:2.40.50.140 29 125 7.8E-37 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS00130 5917bfcbb0c8378aaccf466db2a19207 150 PIRSF PIRSF021377 1 149 3.8E-52 T 11-11-2016 IPR014229 Sporulation protein YtfJ Gferi_RS00130 5917bfcbb0c8378aaccf466db2a19207 150 Pfam PF09579 Sporulation protein YtfJ (Spore_YtfJ) 31 124 6.4E-30 T 11-11-2016 IPR014229 Sporulation protein YtfJ Gferi_RS00130 5917bfcbb0c8378aaccf466db2a19207 150 TIGRFAM TIGR02874 spore_ytfJ: sporulation protein YtfJ 4 132 5.2E-55 T 11-11-2016 IPR014229 Sporulation protein YtfJ Gferi_RS08150 740307d9e4579d650b89d2fb3ac4a68a 541 Gene3D G3DSA:3.40.605.10 41 306 5.3E-59 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS08150 740307d9e4579d650b89d2fb3ac4a68a 541 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 320 331 - T 11-11-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Gferi_RS08150 740307d9e4579d650b89d2fb3ac4a68a 541 SUPERFAMILY SSF53720 10 526 5.89E-124 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS08150 740307d9e4579d650b89d2fb3ac4a68a 541 TIGRFAM TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase 13 540 6.7E-242 T 11-11-2016 IPR005931 Delta-1-pyrroline-5-carboxylate dehydrogenase GO:0003842|GO:0006537|GO:0006561 KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853|Reactome: R-HSA-70688 Gferi_RS08150 740307d9e4579d650b89d2fb3ac4a68a 541 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 292 299 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Gferi_RS08150 740307d9e4579d650b89d2fb3ac4a68a 541 Pfam PF00171 Aldehyde dehydrogenase family 60 513 4.2E-106 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS08150 740307d9e4579d650b89d2fb3ac4a68a 541 Gene3D G3DSA:3.40.309.10 307 499 1.0E-51 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS26940 13bd65bba1083e12802415e894977f70 158 SUPERFAMILY SSF88946 23 118 7.22E-32 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26940 13bd65bba1083e12802415e894977f70 158 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 80 93 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS26940 13bd65bba1083e12802415e894977f70 158 Gene3D G3DSA:1.10.601.10 31 116 5.3E-31 T 11-11-2016 Gferi_RS26940 13bd65bba1083e12802415e894977f70 158 Pfam PF04542 Sigma-70 region 2 56 114 5.0E-13 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS12275 7a1777c3235538b80b40944be3c29d3e 311 SUPERFAMILY SSF52518 7 307 1.08E-76 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS12275 7a1777c3235538b80b40944be3c29d3e 311 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 50 218 9.2E-22 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS12275 7a1777c3235538b80b40944be3c29d3e 311 Gene3D G3DSA:3.40.50.970 11 305 9.8E-76 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS13630 3fa7e2a58327312a3dfde901bafc9111 177 Pfam PF08905 Domain of unknown function (DUF1850) 66 149 1.3E-19 T 11-11-2016 IPR015001 Protein of unknown function DUF1850 Gferi_RS23965 de20c4aed2074bcf749b2c35591b40d9 747 Pfam PF02687 FtsX-like permease family 256 372 2.1E-10 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS23965 de20c4aed2074bcf749b2c35591b40d9 747 Pfam PF02687 FtsX-like permease family 619 734 1.5E-9 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS04375 daba64e123a05095fbc37d97605c8ba2 138 Gene3D G3DSA:2.30.110.10 2 130 4.8E-36 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS04375 daba64e123a05095fbc37d97605c8ba2 138 SUPERFAMILY SSF50475 5 127 2.43E-27 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS04375 daba64e123a05095fbc37d97605c8ba2 138 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 7 127 3.8E-20 T 11-11-2016 Gferi_RS03300 5e170c7823497c2d80f12384bba10ee4 454 Gene3D G3DSA:3.20.20.210 185 386 3.5E-19 T 11-11-2016 Gferi_RS03300 5e170c7823497c2d80f12384bba10ee4 454 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 185 385 1.2E-10 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS03300 5e170c7823497c2d80f12384bba10ee4 454 SUPERFAMILY SSF51726 187 387 8.76E-36 T 11-11-2016 Gferi_RS03300 5e170c7823497c2d80f12384bba10ee4 454 SUPERFAMILY SSF51726 14 145 8.76E-36 T 11-11-2016 Gferi_RS24640 476b11e8ce0270238efd045f9e12c7d9 253 SUPERFAMILY SSF55469 57 249 1.3E-30 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS24640 476b11e8ce0270238efd045f9e12c7d9 253 Gene3D G3DSA:3.40.109.10 52 250 2.3E-33 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS24640 476b11e8ce0270238efd045f9e12c7d9 253 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 77 249 3.4E-45 T 11-11-2016 IPR020051 SagB-type dehydrogenase domain Gferi_RS24640 476b11e8ce0270238efd045f9e12c7d9 253 Pfam PF00881 Nitroreductase family 61 247 1.1E-24 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 Gferi_RS20160 1d3fa95505e1b8594f4b2c7e1ec83da9 352 SUPERFAMILY SSF103481 202 293 1.09E-10 T 11-11-2016 Gferi_RS20160 1d3fa95505e1b8594f4b2c7e1ec83da9 352 SUPERFAMILY SSF103481 71 149 4.05E-7 T 11-11-2016 Gferi_RS20160 1d3fa95505e1b8594f4b2c7e1ec83da9 352 Pfam PF00892 EamA-like transporter family 158 289 7.2E-12 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS20160 1d3fa95505e1b8594f4b2c7e1ec83da9 352 Pfam PF00892 EamA-like transporter family 14 147 7.4E-13 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS16605 5c5490278ac089eeed797d4908f6f5da 223 Gene3D G3DSA:3.40.50.1820 4 222 5.4E-40 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS16605 5c5490278ac089eeed797d4908f6f5da 223 Pfam PF12146 Serine aminopeptidase, S33 154 203 1.3E-7 T 11-11-2016 IPR022742 Serine aminopeptidase, S33 Gferi_RS16605 5c5490278ac089eeed797d4908f6f5da 223 Pfam PF00561 alpha/beta hydrolase fold 5 138 1.1E-9 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 Gferi_RS16605 5c5490278ac089eeed797d4908f6f5da 223 PIRSF PIRSF017388 1 222 3.7E-53 T 11-11-2016 IPR012354 Esterase/lipase GO:0052689 Gferi_RS16605 5c5490278ac089eeed797d4908f6f5da 223 SUPERFAMILY SSF53474 5 221 1.73E-31 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS17280 38c45525e616229378572bc9b773ff74 252 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 2 222 1.5E-58 T 11-11-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 Gferi_RS17280 38c45525e616229378572bc9b773ff74 252 SUPERFAMILY SSF69796 1 232 2.22E-67 T 11-11-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 Gferi_RS17280 38c45525e616229378572bc9b773ff74 252 Hamap MF_01408 Thymidylate synthase ThyX [thyX]. 1 231 30.951 T 11-11-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 Gferi_RS17280 38c45525e616229378572bc9b773ff74 252 Pfam PF02511 Thymidylate synthase complementing protein 4 217 1.9E-71 T 11-11-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 Gferi_RS07770 a4821e7fe7d00fe2c7de8099a70d727f 399 Pfam PF11193 Protein of unknown function (DUF2812) 18 120 2.6E-24 T 11-11-2016 IPR021359 Protein of unknown function DUF2812 Gferi_RS24245 7e463eca1b10aa89cc1e14b36ecdfe1b 373 Gene3D G3DSA:3.30.2110.10 16 184 1.4E-60 T 11-11-2016 Gferi_RS24245 7e463eca1b10aa89cc1e14b36ecdfe1b 373 SUPERFAMILY SSF111342 3 286 1.7E-89 T 11-11-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Gferi_RS24245 7e463eca1b10aa89cc1e14b36ecdfe1b 373 Pfam PF01888 CbiD 13 269 2.1E-102 T 11-11-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Gferi_RS24245 7e463eca1b10aa89cc1e14b36ecdfe1b 373 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 20 358 2.0E-100 T 11-11-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Gferi_RS24245 7e463eca1b10aa89cc1e14b36ecdfe1b 373 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 13 360 31.512 T 11-11-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Gferi_RS24245 7e463eca1b10aa89cc1e14b36ecdfe1b 373 PIRSF PIRSF026782 9 367 4.1E-134 T 11-11-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377 Gferi_RS00475 918c3e68eea9b0d4b02ee036200ceb4d 293 SUPERFAMILY SSF161098 55 279 2.88E-55 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS00475 918c3e68eea9b0d4b02ee036200ceb4d 293 Gene3D G3DSA:1.10.3720.10 61 286 8.6E-58 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS00475 918c3e68eea9b0d4b02ee036200ceb4d 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 286 8.3E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS23440 83fbdc8aef6a87053ea1e469317d1dee 136 SUPERFAMILY SSF54637 2 124 1.21E-33 T 11-11-2016 IPR029069 HotDog domain Gferi_RS23440 83fbdc8aef6a87053ea1e469317d1dee 136 PIRSF PIRSF014972 1 133 2.3E-33 T 11-11-2016 IPR025540 Fluoroacetyl-CoA thioesterase Gferi_RS23440 83fbdc8aef6a87053ea1e469317d1dee 136 Gene3D G3DSA:3.10.129.10 3 132 1.4E-36 T 11-11-2016 IPR029069 HotDog domain Gferi_RS13840 7367db7efa05ddb45e0f9bd164806bae 100 Gene3D G3DSA:3.30.460.10 3 95 1.6E-24 T 11-11-2016 Gferi_RS13840 7367db7efa05ddb45e0f9bd164806bae 100 SUPERFAMILY SSF81301 1 93 6.08E-23 T 11-11-2016 Gferi_RS13840 7367db7efa05ddb45e0f9bd164806bae 100 Pfam PF01909 Nucleotidyltransferase domain 20 94 2.2E-13 T 11-11-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 Gferi_RS27160 7d9cd29168708a17f434c329aa1f659b 433 Pfam PF04015 Domain of unknown function (DUF362) 60 265 1.8E-43 T 11-11-2016 IPR007160 Domain of unknown function DUF362 Gferi_RS02645 78f5c0cc19c89a7b37d070f89a69fd2d 206 PIRSF PIRSF006102 1 206 1.6E-64 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Gferi_RS02645 78f5c0cc19c89a7b37d070f89a69fd2d 206 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 187 3.4E-59 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Gferi_RS04875 297d98154b1c2f09d0386107f6543281 160 Pfam PF03773 Predicted permease 45 159 1.4E-9 T 11-11-2016 IPR005524 Predicted permease DUF318 Gferi_RS23730 23063a800357534c85b9c28ecac0d772 73 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 11-11-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Gferi_RS23730 23063a800357534c85b9c28ecac0d772 73 SUPERFAMILY SSF55008 1 60 4.32E-16 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS23730 23063a800357534c85b9c28ecac0d772 73 Pfam PF00403 Heavy-metal-associated domain 5 66 3.5E-16 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS23730 23063a800357534c85b9c28ecac0d772 73 Gene3D G3DSA:3.30.70.100 1 65 2.0E-17 T 11-11-2016 Gferi_RS24315 373da1dc5aa47ece9a1a39fa4a506949 165 Pfam PF02810 SEC-C motif 147 165 1.7E-9 T 11-11-2016 IPR004027 SEC-C motif Gferi_RS24315 373da1dc5aa47ece9a1a39fa4a506949 165 SUPERFAMILY SSF103642 145 164 1.18E-7 T 11-11-2016 Gferi_RS24315 373da1dc5aa47ece9a1a39fa4a506949 165 Gene3D G3DSA:3.10.450.50 126 165 3.8E-11 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS16210 d38222c8f5f804809cd9ea1315f99666 209 TIGRFAM TIGR02840 spore_YtaF: putative sporulation protein YtaF 5 208 4.0E-48 T 11-11-2016 IPR014205 Sporulation protein YtaF Gferi_RS16210 d38222c8f5f804809cd9ea1315f99666 209 Pfam PF02659 Putative manganese efflux pump 111 205 9.7E-8 T 11-11-2016 IPR003810 Putative manganese efflux pump Gferi_RS25455 8b920117329962f1b0fca7b4a1987389 503 Pfam PF14269 Arylsulfotransferase (ASST) 132 380 1.9E-54 T 11-11-2016 Gferi_RS02280 5f577f93a51cab414a378b81f6e24344 393 PIRSF PIRSF029895 3 393 1.0E-105 T 11-11-2016 IPR010690 Putative stage IV sporulation YqfD Gferi_RS02280 5f577f93a51cab414a378b81f6e24344 393 Pfam PF06898 Putative stage IV sporulation protein YqfD 9 386 7.4E-119 T 11-11-2016 IPR010690 Putative stage IV sporulation YqfD Gferi_RS02280 5f577f93a51cab414a378b81f6e24344 393 TIGRFAM TIGR02876 spore_yqfD: sporulation protein YqfD 7 387 5.6E-98 T 11-11-2016 IPR010690 Putative stage IV sporulation YqfD Gferi_RS21270 f19a96b11bc1a723f206035c32492aa3 143 SUPERFAMILY SSF46785 10 141 3.62E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21270 f19a96b11bc1a723f206035c32492aa3 143 Pfam PF01047 MarR family 36 82 4.2E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21270 f19a96b11bc1a723f206035c32492aa3 143 SMART SM00347 29 128 6.1E-5 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS21270 f19a96b11bc1a723f206035c32492aa3 143 Gene3D G3DSA:1.10.10.10 4 140 4.4E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19045 d57ae1b254d9e8ecc4ed211d76871536 346 TIGRFAM TIGR01918 various_sel_PB: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family 2 346 5.7E-119 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS19045 d57ae1b254d9e8ecc4ed211d76871536 346 Pfam PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) 2 346 3.0E-136 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS05465 480d8bfdd9b931b3b74927fc9ad31a9c 206 Pfam PF07670 Nucleoside recognition 43 148 3.5E-12 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS07260 974592f6247a0a3e9a5d06444d0d18c3 940 TIGRFAM TIGR04286 MSEP-CTERM: MSEP-CTERM protein 2 928 6.1E-222 T 11-11-2016 IPR027550 MSEP-CTERM protein Gferi_RS23460 2a0298f106a3ef264fd6432fb6386205 835 Pfam PF04851 Type III restriction enzyme, res subunit 5 209 5.1E-16 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Gferi_RS23460 2a0298f106a3ef264fd6432fb6386205 835 Gene3D G3DSA:3.40.50.300 6 224 7.0E-10 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23460 2a0298f106a3ef264fd6432fb6386205 835 SUPERFAMILY SSF52540 5 209 4.91E-11 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23460 2a0298f106a3ef264fd6432fb6386205 835 SUPERFAMILY SSF52540 153 248 5.31E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23460 2a0298f106a3ef264fd6432fb6386205 835 SUPERFAMILY SSF52540 308 398 5.31E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS17865 b908cfe54531e79268d52412aec4a454 162 Pfam PF01613 Flavin reductase like domain 8 156 2.1E-13 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS17865 b908cfe54531e79268d52412aec4a454 162 SUPERFAMILY SSF50475 6 157 1.42E-25 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS17865 b908cfe54531e79268d52412aec4a454 162 Gene3D G3DSA:2.30.110.10 8 157 1.6E-39 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS21245 1344a345dbf36ef90e5b5c2929e7ddef 249 Pfam PF06889 Protein of unknown function (DUF1266) 69 241 1.5E-33 T 11-11-2016 IPR009677 Protein of unknown function DUF1266 Gferi_RS21245 1344a345dbf36ef90e5b5c2929e7ddef 249 SUPERFAMILY SSF48239 76 209 2.67E-5 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS06790 11d3788ddca19a714366928d0d541e58 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 262 6.3E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06790 11d3788ddca19a714366928d0d541e58 273 SUPERFAMILY SSF161098 7 272 9.35E-66 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06790 11d3788ddca19a714366928d0d541e58 273 Gene3D G3DSA:1.10.3720.10 6 260 2.2E-60 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 Gene3D G3DSA:3.75.10.10 157 409 1.5E-126 T 11-11-2016 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 Gene3D G3DSA:3.75.10.10 8 71 1.5E-126 T 11-11-2016 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 Hamap MF_00242 Arginine deiminase [arcA]. 5 409 42.733 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 SUPERFAMILY SSF55909 8 409 1.83E-123 T 11-11-2016 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 PIRSF PIRSF006356 1 409 6.1E-154 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 PRINTS PR01466 Bacterial arginine deiminase signature 388 406 3.1E-51 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 PRINTS PR01466 Bacterial arginine deiminase signature 184 199 3.1E-51 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 PRINTS PR01466 Bacterial arginine deiminase signature 345 362 3.1E-51 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 PRINTS PR01466 Bacterial arginine deiminase signature 156 174 3.1E-51 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 PRINTS PR01466 Bacterial arginine deiminase signature 6 26 3.1E-51 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 PRINTS PR01466 Bacterial arginine deiminase signature 365 379 3.1E-51 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 TIGRFAM TIGR01078 arcA: arginine deiminase 9 408 1.1E-153 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 Pfam PF02274 Amidinotransferase 22 406 1.6E-90 T 11-11-2016 Gferi_RS11665 dd69122b9aa8275badea107ce5c02e36 409 Gene3D G3DSA:1.10.3930.10 78 156 4.0E-9 T 11-11-2016 Gferi_RS19105 efd1d9724b7c40c561df445fe4cb36f1 271 Pfam PF03609 PTS system sorbose-specific iic component 5 249 2.4E-62 T 11-11-2016 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 Gferi_RS25615 23eb72c7656ad0c0e8e189926adf191b 100 SUPERFAMILY SSF52794 2 93 1.16E-17 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS25615 23eb72c7656ad0c0e8e189926adf191b 100 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 75 3.1E-12 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 Gferi_RS25615 23eb72c7656ad0c0e8e189926adf191b 100 Gene3D G3DSA:3.40.50.270 4 97 3.2E-24 T 11-11-2016 Gferi_RS06135 e78c183724ec65f23fad090fd64f7353 269 SUPERFAMILY SSF69572 3 251 1.44E-89 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Gferi_RS06135 e78c183724ec65f23fad090fd64f7353 269 Gene3D G3DSA:3.40.50.720 5 251 1.1E-73 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06135 e78c183724ec65f23fad090fd64f7353 269 Pfam PF00899 ThiF family 11 247 4.1E-62 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Gferi_RS02725 2e9956791d5ece12dc945fc8680dce5c 143 Pfam PF00293 NUDIX domain 6 118 1.0E-10 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS02725 2e9956791d5ece12dc945fc8680dce5c 143 Gene3D G3DSA:3.90.79.10 3 129 1.8E-21 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS02725 2e9956791d5ece12dc945fc8680dce5c 143 SUPERFAMILY SSF55811 2 128 1.35E-18 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS09235 14280a7341a229fdcde3dd5eb6635b07 371 SUPERFAMILY SSF144052 1 360 4.05E-114 T 11-11-2016 Gferi_RS09235 14280a7341a229fdcde3dd5eb6635b07 371 Pfam PF02073 Thermophilic metalloprotease (M29) 3 333 2.1E-61 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 Gene3D G3DSA:3.90.650.10 147 324 5.5E-18 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 135 4.4E-19 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 SUPERFAMILY SSF56042 142 322 6.88E-52 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 Gene3D G3DSA:3.30.1330.10 16 139 3.8E-27 T 11-11-2016 IPR016188 PurM-like, N-terminal domain Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 Pfam PF02769 AIR synthase related protein, C-terminal domain 147 324 6.8E-28 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 Hamap MF_00625 Selenide, water dikinase [selD]. 1 327 39.226 T 11-11-2016 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 TIGRFAM TIGR00476 selD: selenide, water dikinase 1 294 1.2E-115 T 11-11-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 PIRSF PIRSF036407 1 327 2.2E-119 T 11-11-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Gferi_RS26445 d0afe5649cfafbbacd4b763da0180c3e 327 SUPERFAMILY SSF55326 2 137 3.93E-38 T 11-11-2016 Gferi_RS09730 be545efc5c3df293a5c88fb6c3ca1991 271 Pfam PF05853 beta-keto acid cleavage enzyme 3 271 4.4E-103 T 11-11-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24 Gferi_RS09730 be545efc5c3df293a5c88fb6c3ca1991 271 Gene3D G3DSA:3.20.20.70 1 271 2.6E-103 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS23840 613f4ea95db00318ea6ce6e9d276b14c 219 Pfam PF03358 NADPH-dependent FMN reductase 1 118 3.4E-22 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS23840 613f4ea95db00318ea6ce6e9d276b14c 219 SUPERFAMILY SSF52218 1 215 7.66E-39 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS23840 613f4ea95db00318ea6ce6e9d276b14c 219 Gene3D G3DSA:3.40.50.360 1 213 7.7E-44 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS13475 b9611fb6354b6437fef5674d3de11f58 261 SUPERFAMILY SSF55781 75 253 2.09E-44 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS13475 b9611fb6354b6437fef5674d3de11f58 261 Pfam PF01614 Bacterial transcriptional regulator 129 248 3.2E-25 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS13475 b9611fb6354b6437fef5674d3de11f58 261 SMART SM00346 10 100 1.0E-24 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS13475 b9611fb6354b6437fef5674d3de11f58 261 Gene3D G3DSA:3.30.450.40 84 255 3.0E-49 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS13475 b9611fb6354b6437fef5674d3de11f58 261 Pfam PF09339 IclR helix-turn-helix domain 12 63 4.1E-15 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS13475 b9611fb6354b6437fef5674d3de11f58 261 Gene3D G3DSA:1.10.10.10 3 79 2.3E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS13475 b9611fb6354b6437fef5674d3de11f58 261 SUPERFAMILY SSF46785 10 83 2.3E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05800 2eb619d7da11a99631b4e97eb992db98 255 Pfam PF02361 Cobalt transport protein 13 222 4.1E-40 T 11-11-2016 IPR003339 ABC/ECF transporter, transmembrane component Gferi_RS05800 2eb619d7da11a99631b4e97eb992db98 255 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 16 218 5.5E-54 T 11-11-2016 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 Gferi_RS05720 43905e1880e5cf762a6b19010ca70ace 607 Pfam PF08439 Oligopeptidase F 124 193 5.1E-27 T 11-11-2016 IPR013647 Oligopeptidase F, N-terminal domain Gferi_RS05720 43905e1880e5cf762a6b19010ca70ace 607 Gene3D G3DSA:3.40.390.10 360 434 5.0E-5 T 11-11-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 Gferi_RS05720 43905e1880e5cf762a6b19010ca70ace 607 Pfam PF01432 Peptidase family M3 214 593 3.0E-74 T 11-11-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 Gferi_RS05720 43905e1880e5cf762a6b19010ca70ace 607 Gene3D G3DSA:1.10.287.830 191 236 5.8E-16 T 11-11-2016 Gferi_RS05720 43905e1880e5cf762a6b19010ca70ace 607 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 17 606 1.5E-203 T 11-11-2016 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 Gferi_RS05720 43905e1880e5cf762a6b19010ca70ace 607 SUPERFAMILY SSF55486 23 589 1.27E-126 T 11-11-2016 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 Gene3D G3DSA:3.40.50.720 2 176 6.6E-32 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 Gene3D G3DSA:3.50.50.60 193 319 1.5E-16 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 6.9E-18 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 148 172 6.9E-18 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 284 302 6.9E-18 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 6.9E-18 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 200 216 6.9E-18 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 3.8E-25 T 11-11-2016 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 296 3.8E-25 T 11-11-2016 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 3.8E-25 T 11-11-2016 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 242 258 3.8E-25 T 11-11-2016 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.8E-25 T 11-11-2016 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 SUPERFAMILY SSF51905 1 319 1.81E-41 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00575 baae297db8fbd9a3922fbe1231c0ca58 368 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 308 5.6E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS02735 c7c4b598a0b695974ae45c108da2e1a0 221 SMART SM00567 E-Z type HEAT repeats 137 166 3.3 T 11-11-2016 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Gferi_RS02735 c7c4b598a0b695974ae45c108da2e1a0 221 SMART SM00567 E-Z type HEAT repeats 168 197 0.0086 T 11-11-2016 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 Gferi_RS02735 c7c4b598a0b695974ae45c108da2e1a0 221 SUPERFAMILY SSF48371 92 214 1.15E-17 T 11-11-2016 IPR016024 Armadillo-type fold GO:0005488 Gferi_RS02735 c7c4b598a0b695974ae45c108da2e1a0 221 Gene3D G3DSA:1.25.10.10 91 214 1.3E-19 T 11-11-2016 IPR011989 Armadillo-like helical Gferi_RS02735 c7c4b598a0b695974ae45c108da2e1a0 221 Pfam PF13646 HEAT repeats 123 211 8.9E-18 T 11-11-2016 Gferi_RS02735 c7c4b598a0b695974ae45c108da2e1a0 221 Pfam PF14493 Helix-turn-helix domain 17 98 1.8E-7 T 11-11-2016 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 Gferi_RS12425 3697a73f7419c5cd2c591f94248248dd 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 1.9E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS12425 3697a73f7419c5cd2c591f94248248dd 244 SUPERFAMILY SSF64288 63 241 1.73E-41 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS12425 3697a73f7419c5cd2c591f94248248dd 244 Gene3D G3DSA:3.40.1410.10 74 241 3.2E-44 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS12425 3697a73f7419c5cd2c591f94248248dd 244 SMART SM00345 16 75 1.2E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS12425 3697a73f7419c5cd2c591f94248248dd 244 Gene3D G3DSA:1.10.10.10 5 73 4.0E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12425 3697a73f7419c5cd2c591f94248248dd 244 SUPERFAMILY SSF46785 9 83 1.19E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12425 3697a73f7419c5cd2c591f94248248dd 244 SMART SM00866 95 235 3.6E-20 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS12425 3697a73f7419c5cd2c591f94248248dd 244 Pfam PF07702 UTRA domain 96 234 2.2E-27 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS01490 9e3496247e107ae7ab4ba3e74c7cffd9 298 Gene3D G3DSA:3.40.50.300 28 186 2.8E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01490 9e3496247e107ae7ab4ba3e74c7cffd9 298 Gene3D G3DSA:1.10.1580.10 189 281 1.3E-31 T 11-11-2016 IPR023179 GTP-binding protein, orthogonal bundle domain Gferi_RS01490 9e3496247e107ae7ab4ba3e74c7cffd9 298 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 132 152 3.7E-5 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS01490 9e3496247e107ae7ab4ba3e74c7cffd9 298 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 178 193 3.7E-5 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS01490 9e3496247e107ae7ab4ba3e74c7cffd9 298 SUPERFAMILY SSF52540 18 211 9.97E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01490 9e3496247e107ae7ab4ba3e74c7cffd9 298 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 12 287 7.0E-114 T 11-11-2016 IPR019991 GTP-binding protein, ribosome biogenesis Gferi_RS01490 9e3496247e107ae7ab4ba3e74c7cffd9 298 PIRSF PIRSF006230 9 292 3.0E-106 T 11-11-2016 IPR016478 GTPase, MTG1 Gferi_RS01490 9e3496247e107ae7ab4ba3e74c7cffd9 298 Pfam PF01926 50S ribosome-binding GTPase 133 231 1.0E-17 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 Gferi_RS01210 9c381075eb8d31c334072f231a40f0ef 665 Pfam PF01935 Domain of unknown function DUF87 210 394 2.1E-11 T 11-11-2016 IPR002789 Helicase HerA, central domain Gferi_RS01210 9c381075eb8d31c334072f231a40f0ef 665 SUPERFAMILY SSF52540 456 660 7.96E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01210 9c381075eb8d31c334072f231a40f0ef 665 SUPERFAMILY SSF52540 210 354 7.96E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01210 9c381075eb8d31c334072f231a40f0ef 665 Gene3D G3DSA:3.40.50.300 226 291 7.8E-16 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01210 9c381075eb8d31c334072f231a40f0ef 665 Gene3D G3DSA:3.40.50.300 492 619 7.8E-16 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07810 8035d386c4ec190deda5d60406074fc6 533 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 15 508 5.6E-147 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS07810 8035d386c4ec190deda5d60406074fc6 533 ProSitePatterns PS01303 BCCT family of transporters signature. 320 329 - T 11-11-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 Gferi_RS07940 26e2635f4f679e94f6ae4943f2fc8d28 426 SUPERFAMILY SSF103473 1 417 3.92E-44 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS07940 26e2635f4f679e94f6ae4943f2fc8d28 426 Pfam PF07690 Major Facilitator Superfamily 16 377 2.6E-25 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS07940 26e2635f4f679e94f6ae4943f2fc8d28 426 Gene3D G3DSA:1.20.1250.20 217 417 1.1E-16 T 11-11-2016 Gferi_RS07940 26e2635f4f679e94f6ae4943f2fc8d28 426 Gene3D G3DSA:1.20.1250.20 6 185 7.1E-23 T 11-11-2016 Gferi_RS05005 8abda0eb77f4cb473e50371ae4b5a8fb 62 SUPERFAMILY SSF161098 4 59 5.23E-7 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05005 8abda0eb77f4cb473e50371ae4b5a8fb 62 Gene3D G3DSA:1.10.3720.10 4 58 4.5E-5 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24085 c64495ff81e6678d404b080acf2e8cc1 283 SUPERFAMILY SSF55469 1 178 9.03E-19 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS24085 c64495ff81e6678d404b080acf2e8cc1 283 SUPERFAMILY SSF55469 179 272 9.29E-8 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS24085 c64495ff81e6678d404b080acf2e8cc1 283 Gene3D G3DSA:3.40.109.10 1 143 4.8E-23 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS24085 c64495ff81e6678d404b080acf2e8cc1 283 Pfam PF14512 Putative TM nitroreductase 2 244 1.7E-30 T 11-11-2016 IPR029478 Putative nitroreductase TM1586 Gferi_RS24085 c64495ff81e6678d404b080acf2e8cc1 283 Gene3D G3DSA:3.40.109.30 177 257 4.7E-10 T 11-11-2016 Gferi_RS05065 4f6bf8792bcd02b5c442d2cc49ccf37a 323 Pfam PF01758 Sodium Bile acid symporter family 38 222 7.2E-24 T 11-11-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 Gferi_RS01595 373ea9c16ce1e0f20e08cb06caa354a3 59 SUPERFAMILY SSF57829 1 58 1.65E-22 T 11-11-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 Gferi_RS01595 373ea9c16ce1e0f20e08cb06caa354a3 59 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 57 3.1E-27 T 11-11-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01595 373ea9c16ce1e0f20e08cb06caa354a3 59 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 56 21.02 T 11-11-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS01595 373ea9c16ce1e0f20e08cb06caa354a3 59 Pfam PF01783 Ribosomal L32p protein family 2 57 3.1E-27 T 11-11-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS12495 6f09fa0a94de6c14f2a770784a654ffa 228 Pfam PF16316 Domain of unknown function (DUF4956) 47 147 6.8E-13 T 11-11-2016 IPR032531 Protein of unknown function DUF4956 Gferi_RS19545 5497815c38a3ab8af993c043d1e4f67a 337 PRINTS PR01713 Nucleotide sugar epimerase signature 225 240 8.1E-19 T 11-11-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Gferi_RS19545 5497815c38a3ab8af993c043d1e4f67a 337 PRINTS PR01713 Nucleotide sugar epimerase signature 251 266 8.1E-19 T 11-11-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Gferi_RS19545 5497815c38a3ab8af993c043d1e4f67a 337 PRINTS PR01713 Nucleotide sugar epimerase signature 290 307 8.1E-19 T 11-11-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Gferi_RS19545 5497815c38a3ab8af993c043d1e4f67a 337 PRINTS PR01713 Nucleotide sugar epimerase signature 30 46 8.1E-19 T 11-11-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 Gferi_RS19545 5497815c38a3ab8af993c043d1e4f67a 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 319 1.7E-69 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19545 5497815c38a3ab8af993c043d1e4f67a 337 Gene3D G3DSA:3.90.25.10 208 326 7.2E-23 T 11-11-2016 Gferi_RS19545 5497815c38a3ab8af993c043d1e4f67a 337 Gene3D G3DSA:3.40.50.720 3 207 1.7E-71 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS19545 5497815c38a3ab8af993c043d1e4f67a 337 SUPERFAMILY SSF51735 3 326 2.18E-93 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS14825 264ad7ccd435cf4917b498c521c9c96e 311 SUPERFAMILY SSF103481 40 143 4.32E-16 T 11-11-2016 Gferi_RS14825 264ad7ccd435cf4917b498c521c9c96e 311 Pfam PF00892 EamA-like transporter family 154 286 1.7E-26 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS14825 264ad7ccd435cf4917b498c521c9c96e 311 Pfam PF00892 EamA-like transporter family 7 139 8.8E-29 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS14825 264ad7ccd435cf4917b498c521c9c96e 311 SUPERFAMILY SSF103481 191 285 3.01E-12 T 11-11-2016 Gferi_RS17105 fe1ea86657a81a28d6e270f2180409a9 151 PIRSF PIRSF010607 1 151 9.6E-54 T 11-11-2016 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355|GO:0006950 Gferi_RS17105 fe1ea86657a81a28d6e270f2180409a9 151 Pfam PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) 3 149 3.4E-53 T 11-11-2016 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355|GO:0006950 Gferi_RS06495 81ea5b854b19bb2287f759cd610d2f21 258 SUPERFAMILY SSF53067 3 249 1.97E-34 T 11-11-2016 Gferi_RS06495 81ea5b854b19bb2287f759cd610d2f21 258 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 4 250 9.3E-53 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Gferi_RS06495 81ea5b854b19bb2287f759cd610d2f21 258 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 2 250 8.6E-76 T 11-11-2016 IPR008275 CoA enzyme activase Gferi_RS06495 81ea5b854b19bb2287f759cd610d2f21 258 Gene3D G3DSA:3.30.420.40 95 230 4.2E-48 T 11-11-2016 Gferi_RS20085 caaa0c75147a30c5406141d75bb207b9 590 Gene3D G3DSA:1.20.1560.10 20 329 3.1E-43 T 11-11-2016 Gferi_RS20085 caaa0c75147a30c5406141d75bb207b9 590 SMART SM00382 374 560 7.9E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20085 caaa0c75147a30c5406141d75bb207b9 590 SUPERFAMILY SSF52540 344 584 4.7E-90 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20085 caaa0c75147a30c5406141d75bb207b9 590 SUPERFAMILY SSF90123 19 330 4.05E-52 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS20085 caaa0c75147a30c5406141d75bb207b9 590 Gene3D G3DSA:3.40.50.300 348 579 1.1E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20085 caaa0c75147a30c5406141d75bb207b9 590 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS20085 caaa0c75147a30c5406141d75bb207b9 590 Pfam PF00005 ABC transporter 365 513 5.2E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS20085 caaa0c75147a30c5406141d75bb207b9 590 Pfam PF00664 ABC transporter transmembrane region 33 296 1.0E-24 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 Gferi_RS18535 4b8371cfe9d45bec679909802ffce281 344 SUPERFAMILY SSF144052 1 327 2.62E-29 T 11-11-2016 Gferi_RS22395 f71448f9dc61790d34f70917fbde8a4e 266 SUPERFAMILY SSF54001 154 172 5.56E-14 T 11-11-2016 Gferi_RS22395 f71448f9dc61790d34f70917fbde8a4e 266 SUPERFAMILY SSF54001 10 98 5.56E-14 T 11-11-2016 Gferi_RS22395 f71448f9dc61790d34f70917fbde8a4e 266 Gene3D G3DSA:2.30.30.330 147 173 2.4E-11 T 11-11-2016 Gferi_RS22395 f71448f9dc61790d34f70917fbde8a4e 266 Gene3D G3DSA:2.30.30.330 10 111 2.4E-11 T 11-11-2016 Gferi_RS11855 dd12fab8249a6926ac27faea40719b08 184 Pfam PF01814 Hemerythrin HHE cation binding domain 3 138 6.7E-16 T 11-11-2016 IPR012312 Haemerythrin-like Reactome: R-HSA-390471 Gferi_RS11855 dd12fab8249a6926ac27faea40719b08 184 Gene3D G3DSA:1.20.120.520 5 168 3.4E-18 T 11-11-2016 Gferi_RS02605 a85293560f239f54eba8910b0befba28 291 Pfam PF00072 Response regulator receiver domain 6 113 2.2E-17 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS02605 a85293560f239f54eba8910b0befba28 291 Gene3D G3DSA:3.40.50.2300 4 125 1.5E-19 T 11-11-2016 Gferi_RS02605 a85293560f239f54eba8910b0befba28 291 SUPERFAMILY SSF52172 4 133 2.56E-21 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS02605 a85293560f239f54eba8910b0befba28 291 Pfam PF08664 YcbB domain 155 284 1.3E-40 T 11-11-2016 IPR013972 YcbB domain Gferi_RS02605 a85293560f239f54eba8910b0befba28 291 SMART SM00448 3 116 2.2E-14 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS17015 f07645031207419188b55dd90b46d186 410 Gene3D G3DSA:3.90.1150.10 290 403 4.1E-15 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS17015 f07645031207419188b55dd90b46d186 410 SUPERFAMILY SSF53383 30 400 4.75E-80 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS17015 f07645031207419188b55dd90b46d186 410 Pfam PF00155 Aminotransferase class I and II 44 382 1.6E-43 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS17015 f07645031207419188b55dd90b46d186 410 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 248 261 - T 11-11-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Gferi_RS17015 f07645031207419188b55dd90b46d186 410 Gene3D G3DSA:3.40.640.10 62 289 8.6E-53 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS18825 caf19f918166054bcfced431f7766e0a 224 SUPERFAMILY SSF52540 7 205 4.76E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18825 caf19f918166054bcfced431f7766e0a 224 Gene3D G3DSA:3.40.50.300 3 200 1.1E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05080 1bbf50f6174ae8d1daef0b5ea93632bb 60 Gene3D G3DSA:2.60.40.1640 2 60 1.7E-9 T 11-11-2016 Gferi_RS17685 34d2127a0686c7b5d7a495ea9f02f798 112 Pfam PF14034 Sporulation protein YtrH 7 104 7.0E-37 T 11-11-2016 IPR025689 Sporulation protein YtrH Gferi_RS20010 30e3fee052dcf70dbde9dbac6e216a59 116 SUPERFAMILY SSF53098 1 58 5.08E-7 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS20010 30e3fee052dcf70dbde9dbac6e216a59 116 Pfam PF13701 Transposase DDE domain group 1 3 111 2.5E-10 T 11-11-2016 IPR025668 Transposase DDE domain Gferi_RS02095 dd583186b36666fdc39c2d01d6794935 115 Pfam PF06803 Protein of unknown function (DUF1232) 41 76 4.5E-8 T 11-11-2016 IPR010652 Protein of unknown function DUF1232 Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 Pfam PF00270 DEAD/DEAH box helicase 106 223 1.2E-10 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 SMART SM00487 100 452 1.5E-20 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 Gene3D G3DSA:3.40.50.300 798 824 5.1E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 Gene3D G3DSA:3.40.50.300 1192 1301 5.1E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 SUPERFAMILY SSF52540 99 152 6.93E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 SUPERFAMILY SSF52540 192 238 6.93E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 SUPERFAMILY SSF52540 314 430 6.93E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 SUPERFAMILY SSF52540 200 222 3.55E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 SUPERFAMILY SSF52540 1200 1305 3.55E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 SUPERFAMILY SSF52540 118 144 3.55E-17 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 Gene3D G3DSA:3.40.50.300 317 425 3.1E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 Gene3D G3DSA:3.40.50.300 100 152 3.1E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 Gene3D G3DSA:3.40.50.300 198 239 3.1E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21640 6b18964aa1ed6b19b4025a9e0e86a966 1921 Pfam PF00271 Helicase conserved C-terminal domain 1236 1281 1.2E-4 T 11-11-2016 IPR001650 Helicase, C-terminal Gferi_RS25565 534742c8a89bdab9077a095ebb82cd37 320 Pfam PF03576 Peptidase family S58 6 310 1.0E-54 T 11-11-2016 IPR005321 Peptidase S58, DmpA Gferi_RS25565 534742c8a89bdab9077a095ebb82cd37 320 Gene3D G3DSA:3.60.70.12 5 312 7.0E-74 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS25565 534742c8a89bdab9077a095ebb82cd37 320 SUPERFAMILY SSF56266 6 315 1.91E-71 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS06205 dac463b3fb5865862313a7fe1810aa6b 111 Pfam PF02583 Metal-sensitive transcriptional repressor 30 108 4.9E-28 T 11-11-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Gferi_RS21675 cafd9825a6be4f14ab986f56b5e16447 190 SUPERFAMILY SSF46689 10 74 7.7E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21675 cafd9825a6be4f14ab986f56b5e16447 190 Gene3D G3DSA:1.10.357.10 19 181 2.8E-14 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS21675 cafd9825a6be4f14ab986f56b5e16447 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 62 6.8E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS15845 5aea769d62fc062f2f8db0efeb11f43b 189 Pfam PF03861 ANTAR domain 134 186 2.6E-20 T 11-11-2016 IPR005561 ANTAR domain GO:0003723 Gferi_RS15845 5aea769d62fc062f2f8db0efeb11f43b 189 PIRSF PIRSF036382 1 189 1.1E-75 T 11-11-2016 IPR008327 Signal transduction response regulator, antiterminator Gferi_RS15845 5aea769d62fc062f2f8db0efeb11f43b 189 Pfam PF00072 Response regulator receiver domain 5 115 1.1E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15845 5aea769d62fc062f2f8db0efeb11f43b 189 SMART SM00448 3 115 1.4E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS15845 5aea769d62fc062f2f8db0efeb11f43b 189 SMART SM01012 131 186 4.8E-23 T 11-11-2016 IPR005561 ANTAR domain GO:0003723 Gferi_RS15845 5aea769d62fc062f2f8db0efeb11f43b 189 Gene3D G3DSA:3.40.50.2300 4 127 8.1E-35 T 11-11-2016 Gferi_RS15845 5aea769d62fc062f2f8db0efeb11f43b 189 Gene3D G3DSA:1.10.10.10 134 186 5.5E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15845 5aea769d62fc062f2f8db0efeb11f43b 189 SUPERFAMILY SSF52172 3 186 2.28E-55 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS13935 c50c83dfef69b32936a2cf0acb0e9aa4 388 SUPERFAMILY SSF56059 78 301 4.95E-27 T 11-11-2016 Gferi_RS13935 c50c83dfef69b32936a2cf0acb0e9aa4 388 Gene3D G3DSA:3.30.470.20 104 301 5.3E-23 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS13935 c50c83dfef69b32936a2cf0acb0e9aa4 388 Pfam PF02222 ATP-grasp domain 118 274 8.9E-13 T 11-11-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 TIGRFAM TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat 483 497 4.5E-4 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 TIGRFAM TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat 508 526 7.6E-4 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 TIGRFAM TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat 348 362 0.0036 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Gene3D G3DSA:2.60.40.920 748 822 2.2E-8 T 11-11-2016 IPR003344 Big-1 (bacterial Ig-like domain 1) domain Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF07833 Copper amine oxidase N-terminal domain 1352 1412 1.2E-16 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF07833 Copper amine oxidase N-terminal domain 1383 1469 7.1E-25 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Gene3D G3DSA:2.160.20.10 69 371 7.6E-38 T 11-11-2016 IPR012334 Pectin lyase fold Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Gene3D G3DSA:2.160.20.10 372 545 3.6E-23 T 11-11-2016 IPR012334 Pectin lyase fold Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SUPERFAMILY SSF51126 413 648 1.41E-13 T 11-11-2016 IPR011050 Pectin lyase fold/virulence factor Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat 296 312 0.033 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat 347 363 0.0079 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat 372 389 0.023 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat 401 420 0.12 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat 507 524 0.021 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat 483 498 0.055 T 11-11-2016 IPR003368 Polymorphic outer membrane protein repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF13205 Bacterial Ig-like domain 1024 1123 1.9E-13 T 11-11-2016 IPR032812 SbsA, Ig-like domain Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 504 525 730.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 560 586 2000.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 423 449 9900.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 369 391 4700.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 288 314 4000.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 454 475 880.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 479 500 3200.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 527 558 590.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 214 235 5600.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 398 422 3000.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SMART SM00710 344 365 10000.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Gene3D G3DSA:3.30.457.10 1351 1394 1.3E-15 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Gene3D G3DSA:3.30.457.10 1395 1459 1.4E-21 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SUPERFAMILY SSF55383 1385 1463 6.08E-20 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SUPERFAMILY SSF49373 748 825 4.71E-8 T 11-11-2016 IPR008964 Invasin/intimin cell-adhesion fragments Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF16640 Bacterial Ig-like domain (group 3) 755 839 1.4E-11 T 11-11-2016 IPR032109 Bacterial Ig-like domain (group 3) Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 Pfam PF07523 Bacterial Ig-like domain (group 3) 851 915 6.7E-12 T 11-11-2016 IPR022038 Bacterial Ig-like domain Gferi_RS22020 c3a06f5402e0e8dcd205e31edffe9ee4 1471 SUPERFAMILY SSF51126 103 393 1.84E-30 T 11-11-2016 IPR011050 Pectin lyase fold/virulence factor Gferi_RS13740 131253a80c336fbadf355673ba587213 349 Gene3D G3DSA:1.10.10.630 232 304 1.5E-17 T 11-11-2016 IPR006343 Replication protein, DnaD/DnaB domain Gferi_RS13740 131253a80c336fbadf355673ba587213 349 Gene3D G3DSA:1.10.10.630 143 218 3.0E-20 T 11-11-2016 IPR006343 Replication protein, DnaD/DnaB domain Gferi_RS13740 131253a80c336fbadf355673ba587213 349 SUPERFAMILY SSF158499 147 214 9.42E-14 T 11-11-2016 IPR006343 Replication protein, DnaD/DnaB domain Gferi_RS13740 131253a80c336fbadf355673ba587213 349 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 250 305 1.2E-11 T 11-11-2016 IPR006343 Replication protein, DnaD/DnaB domain Gferi_RS13740 131253a80c336fbadf355673ba587213 349 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 149 219 4.0E-13 T 11-11-2016 IPR006343 Replication protein, DnaD/DnaB domain Gferi_RS13740 131253a80c336fbadf355673ba587213 349 SUPERFAMILY SSF158499 235 300 2.09E-14 T 11-11-2016 IPR006343 Replication protein, DnaD/DnaB domain Gferi_RS13740 131253a80c336fbadf355673ba587213 349 Pfam PF07261 Replication initiation and membrane attachment 149 221 1.3E-19 T 11-11-2016 IPR006343 Replication protein, DnaD/DnaB domain Gferi_RS13740 131253a80c336fbadf355673ba587213 349 Pfam PF07261 Replication initiation and membrane attachment 244 306 8.7E-14 T 11-11-2016 IPR006343 Replication protein, DnaD/DnaB domain Gferi_RS13740 131253a80c336fbadf355673ba587213 349 PIRSF PIRSF033722 1 349 7.6E-63 T 11-11-2016 IPR017019 Predicted DNA replication protein, bacterial Gferi_RS04555 de309e377b9b87ad5d0fcfc6b9e86b7e 405 SUPERFAMILY SSF51735 10 124 3.86E-12 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04555 de309e377b9b87ad5d0fcfc6b9e86b7e 405 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 214 371 1.1E-35 T 11-11-2016 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 Gferi_RS04555 de309e377b9b87ad5d0fcfc6b9e86b7e 405 SUPERFAMILY SSF48179 216 399 2.72E-24 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS04555 de309e377b9b87ad5d0fcfc6b9e86b7e 405 Gene3D G3DSA:1.10.1040.10 223 388 7.8E-41 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS04555 de309e377b9b87ad5d0fcfc6b9e86b7e 405 Gene3D G3DSA:3.40.50.720 7 154 5.5E-16 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS26195 495bd8348e0cadf6dc2efdf23676e86a 127 SUPERFAMILY SSF75138 10 114 1.14E-18 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS26195 495bd8348e0cadf6dc2efdf23676e86a 127 Pfam PF07085 DRTGG domain 13 107 1.1E-5 T 11-11-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Gferi_RS26195 495bd8348e0cadf6dc2efdf23676e86a 127 Gene3D G3DSA:3.40.1390.20 9 111 5.8E-14 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like Gferi_RS08855 041b8c6547490dbeddbb9629afc81131 430 SUPERFAMILY SSF51445 51 422 1.68E-90 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS08855 041b8c6547490dbeddbb9629afc81131 430 Gene3D G3DSA:3.20.20.300 69 413 2.8E-99 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS08855 041b8c6547490dbeddbb9629afc81131 430 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 64 387 6.2E-86 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 Gferi_RS04665 06a2d8c130524cf521d3baa4f8cd929f 300 SUPERFAMILY SSF47090 27 95 2.35E-22 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS04665 06a2d8c130524cf521d3baa4f8cd929f 300 Gene3D G3DSA:1.10.101.10 29 93 8.2E-25 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS04665 06a2d8c130524cf521d3baa4f8cd929f 300 Gene3D G3DSA:1.10.101.10 110 166 3.4E-20 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS04665 06a2d8c130524cf521d3baa4f8cd929f 300 TIGRFAM TIGR02869 spore_SleB: spore cortex-lytic enzyme 110 298 7.3E-85 T 11-11-2016 IPR014224 Spore cortex-lytic enzyme SleB GO:0003824|GO:0009847 Gferi_RS04665 06a2d8c130524cf521d3baa4f8cd929f 300 Pfam PF01471 Putative peptidoglycan binding domain 110 164 1.7E-18 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS04665 06a2d8c130524cf521d3baa4f8cd929f 300 Pfam PF01471 Putative peptidoglycan binding domain 36 92 3.2E-20 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS04665 06a2d8c130524cf521d3baa4f8cd929f 300 SUPERFAMILY SSF47090 109 169 9.61E-19 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS04665 06a2d8c130524cf521d3baa4f8cd929f 300 Pfam PF07486 Cell Wall Hydrolase 200 297 2.9E-28 T 11-11-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 Gferi_RS11590 ff2437d7b5f9e2e6054d03314ed31f02 244 Pfam PF12804 MobA-like NTP transferase domain 5 129 2.8E-11 T 11-11-2016 IPR025877 MobA-like NTP transferase Gferi_RS11590 ff2437d7b5f9e2e6054d03314ed31f02 244 Gene3D G3DSA:3.90.550.10 2 243 1.2E-15 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS11590 ff2437d7b5f9e2e6054d03314ed31f02 244 SUPERFAMILY SSF53448 2 235 2.07E-27 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS08080 30d3c00ac17dd7327ead7a854e243fc0 84 TIGRFAM TIGR03905 TIGR03905_4_Cys: uncharacterized protein TIGR03905 2 76 3.3E-35 T 11-11-2016 IPR023806 Conserved hypothetical protein CHP03905 Gferi_RS08080 30d3c00ac17dd7327ead7a854e243fc0 84 Pfam PF12637 TSCPD domain 4 76 1.1E-31 T 11-11-2016 IPR024434 TSCPD domain Gferi_RS08675 c07ca9c8516e1d15b707f56e806d501b 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 56 326 7.1E-56 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS08675 c07ca9c8516e1d15b707f56e806d501b 330 SUPERFAMILY SSF53850 109 292 4.4E-12 T 11-11-2016 Gferi_RS08675 c07ca9c8516e1d15b707f56e806d501b 330 PIRSF PIRSF017082 4 329 1.3E-92 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS10835 1d7238df88d80eed1a118493bb0db564 191 Gene3D G3DSA:1.10.10.10 125 187 5.9E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS10835 1d7238df88d80eed1a118493bb0db564 191 Pfam PF08281 Sigma-70, region 4 131 183 8.4E-11 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10835 1d7238df88d80eed1a118493bb0db564 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 187 5.7E-25 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10835 1d7238df88d80eed1a118493bb0db564 191 Gene3D G3DSA:1.10.1740.10 3 65 1.3E-11 T 11-11-2016 Gferi_RS10835 1d7238df88d80eed1a118493bb0db564 191 SUPERFAMILY SSF88659 106 187 2.43E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10835 1d7238df88d80eed1a118493bb0db564 191 SUPERFAMILY SSF88946 5 75 2.09E-12 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS10835 1d7238df88d80eed1a118493bb0db564 191 Pfam PF04542 Sigma-70 region 2 23 70 5.2E-10 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS00945 0dad61b91d5e4fbda2fde04456f500c9 124 Pfam PF12611 Protein of unknown function (DUF3766) 100 123 9.6E-10 T 11-11-2016 IPR013367 Flagellar, putative Gferi_RS00945 0dad61b91d5e4fbda2fde04456f500c9 124 TIGRFAM TIGR02530 flg_new: flagellar operon protein 29 124 2.4E-35 T 11-11-2016 IPR013367 Flagellar, putative Gferi_RS02145 a8a74e5be1378dce66b1f7e0735fc56a 298 SUPERFAMILY SSF88713 72 293 1.75E-59 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS02145 a8a74e5be1378dce66b1f7e0735fc56a 298 Pfam PF04748 Divergent polysaccharide deacetylase 77 293 9.1E-68 T 11-11-2016 IPR006837 Divergent polysaccharide deacetylase Gferi_RS02145 a8a74e5be1378dce66b1f7e0735fc56a 298 Gene3D G3DSA:3.20.20.370 65 295 2.7E-72 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS24170 47575d5134c1913df260b32a95bbacb3 478 Pfam PF12229 Putative peptidoglycan binding domain 87 200 7.8E-24 T 11-11-2016 IPR022029 Putative peptidoglycan binding domain Gferi_RS24170 47575d5134c1913df260b32a95bbacb3 478 Pfam PF07501 G5 domain 383 454 4.6E-17 T 11-11-2016 IPR011098 G5 domain Gferi_RS24170 47575d5134c1913df260b32a95bbacb3 478 SMART SM01208 378 455 7.0E-22 T 11-11-2016 IPR011098 G5 domain Gferi_RS24170 47575d5134c1913df260b32a95bbacb3 478 Pfam PF04294 VanW like protein 242 371 1.5E-51 T 11-11-2016 IPR007391 Vancomycin resistance VanW Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 TIGRFAM TIGR02024 FtcD: glutamate formiminotransferase 5 299 4.4E-125 T 11-11-2016 IPR004227 Formiminotransferase catalytic domain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 SMART SM01222 5 182 1.5E-108 T 11-11-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 SUPERFAMILY SSF55116 5 182 1.36E-68 T 11-11-2016 IPR022384 Formiminotransferase subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 Pfam PF07837 Formiminotransferase domain, N-terminal subdomain 6 181 9.9E-72 T 11-11-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 SUPERFAMILY SSF55116 183 298 3.66E-45 T 11-11-2016 IPR022384 Formiminotransferase subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 Gene3D G3DSA:3.30.990.10 5 182 2.3E-73 T 11-11-2016 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 Pfam PF02971 Formiminotransferase domain 184 286 2.1E-24 T 11-11-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 SMART SM01221 183 297 1.6E-70 T 11-11-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS10445 635e188c56325ef8b581e10fd5444ddc 300 Gene3D G3DSA:3.30.70.670 184 299 7.5E-48 T 11-11-2016 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0008152|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Gferi_RS15375 8f70201951a0df7c9f0d4f43e1ceeb72 444 SUPERFAMILY SSF53383 17 425 5.91E-90 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS15375 8f70201951a0df7c9f0d4f43e1ceeb72 444 Pfam PF00266 Aminotransferase class-V 29 418 2.0E-89 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS15375 8f70201951a0df7c9f0d4f43e1ceeb72 444 Gene3D G3DSA:3.40.640.10 50 287 4.1E-63 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS15375 8f70201951a0df7c9f0d4f43e1ceeb72 444 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 221 240 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Gferi_RS15375 8f70201951a0df7c9f0d4f43e1ceeb72 444 Gene3D G3DSA:3.90.1150.10 288 424 4.2E-20 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS03410 8610970be223260acfb3cc148772745d 189 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 151 1.3E-20 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS24125 6b00861d0ed308dcd81afb97cd082b6b 451 Gene3D G3DSA:3.40.50.300 31 93 1.1E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24125 6b00861d0ed308dcd81afb97cd082b6b 451 Gene3D G3DSA:3.40.50.300 305 429 1.1E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24125 6b00861d0ed308dcd81afb97cd082b6b 451 SUPERFAMILY SSF52540 31 91 1.51E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24125 6b00861d0ed308dcd81afb97cd082b6b 451 SUPERFAMILY SSF52540 307 437 1.51E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24125 6b00861d0ed308dcd81afb97cd082b6b 451 Pfam PF13654 AAA domain 26 432 3.2E-156 T 11-11-2016 Gferi_RS26970 95eb3858383c1ccf56b5a02f7e5765bb 432 SMART SM00854 53 315 1.2E-88 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS26970 95eb3858383c1ccf56b5a02f7e5765bb 432 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 54 315 2.8E-76 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS26970 95eb3858383c1ccf56b5a02f7e5765bb 432 Gene3D G3DSA:3.60.21.10 45 311 4.3E-26 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS26970 95eb3858383c1ccf56b5a02f7e5765bb 432 SUPERFAMILY SSF56300 52 193 4.22E-41 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS26970 95eb3858383c1ccf56b5a02f7e5765bb 432 SUPERFAMILY SSF56300 222 333 4.22E-41 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS22935 3b9931c05f58eaff3562aa79f8a617ae 55 PIRSF PIRSF000071 1 55 6.1E-24 T 11-11-2016 IPR024922 Rubredoxin GO:0005506|GO:0009055 Gferi_RS22935 3b9931c05f58eaff3562aa79f8a617ae 55 SUPERFAMILY SSF57802 1 52 9.76E-20 T 11-11-2016 Gferi_RS22935 3b9931c05f58eaff3562aa79f8a617ae 55 Pfam PF00301 Rubredoxin 4 49 9.0E-20 T 11-11-2016 IPR024935 Rubredoxin domain GO:0005506 Gferi_RS22935 3b9931c05f58eaff3562aa79f8a617ae 55 Gene3D G3DSA:2.20.28.10 1 52 1.6E-23 T 11-11-2016 IPR004039 Rubredoxin-type fold Gferi_RS22935 3b9931c05f58eaff3562aa79f8a617ae 55 PRINTS PR00163 Rubredoxin signature 3 19 4.5E-9 T 11-11-2016 IPR024935 Rubredoxin domain GO:0005506 Gferi_RS22935 3b9931c05f58eaff3562aa79f8a617ae 55 PRINTS PR00163 Rubredoxin signature 33 49 4.5E-9 T 11-11-2016 IPR024935 Rubredoxin domain GO:0005506 Gferi_RS07405 48f90224b2f9d5e266676773b5c64080 315 Pfam PF00581 Rhodanese-like domain 66 152 4.2E-10 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07405 48f90224b2f9d5e266676773b5c64080 315 Pfam PF00581 Rhodanese-like domain 212 296 2.1E-11 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07405 48f90224b2f9d5e266676773b5c64080 315 SMART SM00450 65 160 7.2E-12 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07405 48f90224b2f9d5e266676773b5c64080 315 SMART SM00450 210 312 7.8E-13 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07405 48f90224b2f9d5e266676773b5c64080 315 SUPERFAMILY SSF52821 195 314 1.44E-23 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07405 48f90224b2f9d5e266676773b5c64080 315 Gene3D G3DSA:3.40.250.10 51 152 4.2E-20 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07405 48f90224b2f9d5e266676773b5c64080 315 Gene3D G3DSA:3.40.250.10 207 314 4.3E-23 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS07405 48f90224b2f9d5e266676773b5c64080 315 SUPERFAMILY SSF52821 53 151 4.85E-21 T 11-11-2016 IPR001763 Rhodanese-like domain Gferi_RS25900 8a839bd626021d01bb1ea54152e30d3e 63 Gene3D G3DSA:1.20.1260.10 18 61 8.6E-4 T 11-11-2016 IPR012347 Ferritin-related Gferi_RS13930 114df02051f72ee3a97994b65b4a22ec 399 Gene3D G3DSA:3.30.470.20 110 386 1.7E-22 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS13930 114df02051f72ee3a97994b65b4a22ec 399 Pfam PF02655 ATP-grasp domain 111 282 1.4E-11 T 11-11-2016 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 Gferi_RS13930 114df02051f72ee3a97994b65b4a22ec 399 SUPERFAMILY SSF56059 87 327 1.38E-32 T 11-11-2016 Gferi_RS21330 f5a00abbd94ed19f707ac637c769ddd5 116 Pfam PF06304 Protein of unknown function (DUF1048) 5 105 6.3E-41 T 11-11-2016 IPR008316 Uncharacterised conserved protein UCP029876 Gferi_RS21330 f5a00abbd94ed19f707ac637c769ddd5 116 SUPERFAMILY SSF158560 1 99 1.11E-33 T 11-11-2016 Gferi_RS21330 f5a00abbd94ed19f707ac637c769ddd5 116 PIRSF PIRSF029876 1 109 2.0E-43 T 11-11-2016 IPR008316 Uncharacterised conserved protein UCP029876 Gferi_RS21330 f5a00abbd94ed19f707ac637c769ddd5 116 Gene3D G3DSA:1.10.1900.10 14 111 8.4E-40 T 11-11-2016 IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein GO:0003723 Gferi_RS24705 ecb0ccd86be847ac0f56fc16f5caad28 153 Gene3D G3DSA:3.40.630.30 2 150 1.8E-31 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS24705 ecb0ccd86be847ac0f56fc16f5caad28 153 SUPERFAMILY SSF55729 1 144 3.49E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS24705 ecb0ccd86be847ac0f56fc16f5caad28 153 Pfam PF00583 Acetyltransferase (GNAT) family 56 133 6.1E-14 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS22190 9b3d6b2eb77128ceab3e0be8ec4bd13f 74 Pfam PF02597 ThiS family 5 74 9.0E-13 T 11-11-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 Gferi_RS22190 9b3d6b2eb77128ceab3e0be8ec4bd13f 74 Gene3D G3DSA:3.10.20.30 2 74 1.0E-19 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS22190 9b3d6b2eb77128ceab3e0be8ec4bd13f 74 SUPERFAMILY SSF54285 2 72 6.17E-15 T 11-11-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Gferi_RS02115 362ba4394d4fa7ac47a6e1e6863e9cb6 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 276 6.0E-41 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS02415 1a8894713531e0194aaa2caab1517661 246 Pfam PF12706 Beta-lactamase superfamily domain 30 213 4.7E-20 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02415 1a8894713531e0194aaa2caab1517661 246 SUPERFAMILY SSF56281 1 243 9.98E-49 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02415 1a8894713531e0194aaa2caab1517661 246 Gene3D G3DSA:3.60.15.10 1 243 3.9E-53 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS02415 1a8894713531e0194aaa2caab1517661 246 SMART SM00849 18 212 0.0027 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS13845 bf562b8a64112f3207815ef9311ac213 114 Gene3D G3DSA:1.20.120.580 67 104 3.8E-6 T 11-11-2016 Gferi_RS13845 bf562b8a64112f3207815ef9311ac213 114 Pfam PF01934 Protein of unknown function DUF86 12 105 4.7E-28 T 11-11-2016 IPR008201 Protein of unknown function DUF86 Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 Pfam PF01022 Bacterial regulatory protein, arsR family 46 91 2.6E-17 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 Gene3D G3DSA:1.10.10.10 9 120 1.3E-40 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 62 80 - T 11-11-2016 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 SMART SM00418 39 117 9.1E-28 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 88 103 3.4E-20 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 3.4E-20 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 71 3.4E-20 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 73 88 3.4E-20 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Gferi_RS23720 c77f930086e84039c6c82625ac79adb7 121 SUPERFAMILY SSF46785 23 114 3.78E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS01235 153c774fb20d56860813b0cd23756296 378 SUPERFAMILY SSF56726 17 266 1.01E-16 T 11-11-2016 IPR002815 Spo11/DNA topoisomerase VI subunit A GO:0000737|GO:0003677|GO:0005694 Reactome: R-HSA-912446 Gferi_RS01235 153c774fb20d56860813b0cd23756296 378 Gene3D G3DSA:3.40.1360.10 103 213 2.7E-14 T 11-11-2016 Gferi_RS11200 078126e5992a4f25f01acc5636aec7f4 127 SUPERFAMILY SSF54637 4 126 2.75E-18 T 11-11-2016 IPR029069 HotDog domain Gferi_RS11200 078126e5992a4f25f01acc5636aec7f4 127 Pfam PF03061 Thioesterase superfamily 24 87 1.8E-5 T 11-11-2016 IPR006683 Thioesterase domain Reactome: R-HSA-75105 Gferi_RS11200 078126e5992a4f25f01acc5636aec7f4 127 Gene3D G3DSA:3.10.129.10 6 126 8.4E-16 T 11-11-2016 IPR029069 HotDog domain Gferi_RS25665 2ad4fed0927ca8542eb7f207ba4347a0 447 PIRSF PIRSF006304 1 447 6.7E-171 T 11-11-2016 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 Gferi_RS25665 2ad4fed0927ca8542eb7f207ba4347a0 447 Pfam PF03611 PTS system sugar-specific permease component 6 390 3.0E-88 T 11-11-2016 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 Gferi_RS22145 87b306d0e8fe4c7422c2084abbdf05ca 793 SUPERFAMILY SSF101898 46 306 1.6E-17 T 11-11-2016 Gferi_RS22145 87b306d0e8fe4c7422c2084abbdf05ca 793 Gene3D G3DSA:3.40.190.10 370 527 2.9E-30 T 11-11-2016 Gferi_RS22145 87b306d0e8fe4c7422c2084abbdf05ca 793 Gene3D G3DSA:2.120.10.30 48 307 1.0E-15 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS22145 87b306d0e8fe4c7422c2084abbdf05ca 793 Pfam PF01547 Bacterial extracellular solute-binding protein 385 672 5.6E-23 T 11-11-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 Gferi_RS22145 87b306d0e8fe4c7422c2084abbdf05ca 793 SUPERFAMILY SSF53850 374 792 1.97E-40 T 11-11-2016 Gferi_RS22145 87b306d0e8fe4c7422c2084abbdf05ca 793 Gene3D G3DSA:3.40.190.10 551 677 0.001 T 11-11-2016 Gferi_RS22145 87b306d0e8fe4c7422c2084abbdf05ca 793 Gene3D G3DSA:3.40.190.10 754 782 0.001 T 11-11-2016 Gferi_RS05380 e08383e77891a0a08c9a0bad2b206897 209 PIRSF PIRSF033634 4 209 5.0E-45 T 11-11-2016 IPR017018 Uncharacterised conserved protein UCP033634 Gferi_RS05380 e08383e77891a0a08c9a0bad2b206897 209 Gene3D G3DSA:3.40.50.1820 92 183 1.5E-5 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS19225 3b4b48419c951913217d3f8ae14c6c62 363 Gene3D G3DSA:3.50.50.60 70 131 1.9E-4 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19225 3b4b48419c951913217d3f8ae14c6c62 363 Pfam PF02625 XdhC and CoxI family 273 333 1.5E-20 T 11-11-2016 IPR003777 XdhC- CoxI Gferi_RS19225 3b4b48419c951913217d3f8ae14c6c62 363 Pfam PF13478 XdhC Rossmann domain 94 236 1.4E-42 T 11-11-2016 IPR027051 XdhC Rossmann domain Gferi_RS12965 edda67a2876ea2f791a2b6e4c2a38cb0 177 Pfam PF02829 3H domain 73 169 1.1E-30 T 11-11-2016 IPR004173 3H domain GO:0036094 Gferi_RS12965 edda67a2876ea2f791a2b6e4c2a38cb0 177 PIRSF PIRSF037847 1 173 4.7E-61 T 11-11-2016 IPR026043 Transcription repressor NadR Gferi_RS12965 edda67a2876ea2f791a2b6e4c2a38cb0 177 Gene3D G3DSA:3.30.1340.20 69 171 8.6E-34 T 11-11-2016 IPR004173 3H domain GO:0036094 Gferi_RS12965 edda67a2876ea2f791a2b6e4c2a38cb0 177 ProDom PD469575 TRANSCRIPTION DNA-BINDING REGULATION TRANSCRIPTIONAL REGULATOR REPRESSOR FAMILY BIOTIN REGULATOR 3H 79 171 7.0E-20 T 11-11-2016 IPR004173 3H domain GO:0036094 Gferi_RS12965 edda67a2876ea2f791a2b6e4c2a38cb0 177 SUPERFAMILY SSF75500 68 172 1.31E-27 T 11-11-2016 IPR004173 3H domain GO:0036094 Gferi_RS12965 edda67a2876ea2f791a2b6e4c2a38cb0 177 Gene3D G3DSA:1.10.10.10 1 61 8.9E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12965 edda67a2876ea2f791a2b6e4c2a38cb0 177 SUPERFAMILY SSF46785 1 61 1.08E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12965 edda67a2876ea2f791a2b6e4c2a38cb0 177 Pfam PF08279 HTH domain 6 58 1.6E-15 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 Gferi_RS02670 1408517935b7d1a43faa352a35680464 383 Gene3D G3DSA:3.40.50.2000 186 342 1.1E-26 T 11-11-2016 Gferi_RS02670 1408517935b7d1a43faa352a35680464 383 Pfam PF00534 Glycosyl transferases group 1 190 348 5.7E-32 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS02670 1408517935b7d1a43faa352a35680464 383 Pfam PF13439 Glycosyltransferase Family 4 14 177 3.9E-26 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Gferi_RS02670 1408517935b7d1a43faa352a35680464 383 SUPERFAMILY SSF53756 2 371 7.63E-79 T 11-11-2016 Gferi_RS12445 d5c9b86dd453035243b5a0829af6d81f 398 Pfam PF07833 Copper amine oxidase N-terminal domain 166 266 2.0E-24 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12445 d5c9b86dd453035243b5a0829af6d81f 398 Gene3D G3DSA:3.30.457.10 170 250 5.5E-22 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12445 d5c9b86dd453035243b5a0829af6d81f 398 Gene3D G3DSA:3.30.457.10 251 271 7.2E-4 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12445 d5c9b86dd453035243b5a0829af6d81f 398 SUPERFAMILY SSF55383 169 261 2.48E-19 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS12090 4c94e258d4f635d1bc011f0e0d0b1dfc 338 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 69 81 3.9E-7 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS12090 4c94e258d4f635d1bc011f0e0d0b1dfc 338 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 88 102 3.9E-7 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS12090 4c94e258d4f635d1bc011f0e0d0b1dfc 338 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 183 191 3.9E-7 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS12090 4c94e258d4f635d1bc011f0e0d0b1dfc 338 SMART SM00631 44 322 7.1E-19 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS12090 4c94e258d4f635d1bc011f0e0d0b1dfc 338 Pfam PF00246 Zinc carboxypeptidase 49 322 8.0E-38 T 11-11-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 Gferi_RS12090 4c94e258d4f635d1bc011f0e0d0b1dfc 338 Gene3D G3DSA:3.40.630.10 44 336 7.8E-57 T 11-11-2016 Gferi_RS12090 4c94e258d4f635d1bc011f0e0d0b1dfc 338 SUPERFAMILY SSF53187 44 334 5.29E-54 T 11-11-2016 Gferi_RS11915 c18e60f3b5303a5a4b913a84bf2ffbf7 256 Gene3D G3DSA:1.20.1080.10 22 255 4.4E-71 T 11-11-2016 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Gferi_RS11915 c18e60f3b5303a5a4b913a84bf2ffbf7 256 Pfam PF01226 Formate/nitrite transporter 5 252 4.0E-69 T 11-11-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 Gferi_RS26030 4799b642327443f205fd922a1c429878 216 Gene3D G3DSA:3.40.50.10150 38 213 3.0E-86 T 11-11-2016 IPR010254 B12-dependent dehydratases, beta subunit Gferi_RS26030 4799b642327443f205fd922a1c429878 216 Pfam PF02288 Dehydratase medium subunit 60 173 8.7E-39 T 11-11-2016 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor Gferi_RS26030 4799b642327443f205fd922a1c429878 216 SUPERFAMILY SSF52968 38 214 5.97E-74 T 11-11-2016 IPR010254 B12-dependent dehydratases, beta subunit Gferi_RS26030 4799b642327443f205fd922a1c429878 216 PIRSF PIRSF018506 1 215 1.3E-103 T 11-11-2016 IPR025541 Propanediol/glycerol dehydratase, medium subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 Gferi_RS08505 05747f41dfa8eff05c5f51e95d4019f1 227 Pfam PF00027 Cyclic nucleotide-binding domain 29 114 1.4E-6 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain Gferi_RS08505 05747f41dfa8eff05c5f51e95d4019f1 227 Gene3D G3DSA:1.10.10.10 143 221 2.0E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08505 05747f41dfa8eff05c5f51e95d4019f1 227 SMART SM00419 165 212 1.4E-4 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS08505 05747f41dfa8eff05c5f51e95d4019f1 227 SUPERFAMILY SSF46785 143 221 6.92E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS08505 05747f41dfa8eff05c5f51e95d4019f1 227 Pfam PF13545 Crp-like helix-turn-helix domain 147 218 5.6E-13 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 Gferi_RS08505 05747f41dfa8eff05c5f51e95d4019f1 227 Gene3D G3DSA:2.60.120.10 14 139 6.9E-18 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS08505 05747f41dfa8eff05c5f51e95d4019f1 227 SUPERFAMILY SSF51206 19 139 6.81E-19 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like Gferi_RS11495 bd583785776b3e76d5fe4b28bdb4af0c 804 Gene3D G3DSA:3.30.457.10 29 74 1.5E-4 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11495 bd583785776b3e76d5fe4b28bdb4af0c 804 SUPERFAMILY SSF55383 30 82 6.67E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS11495 bd583785776b3e76d5fe4b28bdb4af0c 804 Pfam PF07833 Copper amine oxidase N-terminal domain 30 84 1.5E-5 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS01470 d8b03a15a58dff7ce8f4d855b75471f8 119 Gene3D G3DSA:3.40.1350.10 11 118 1.4E-32 T 11-11-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 Gferi_RS01470 d8b03a15a58dff7ce8f4d855b75471f8 119 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 4 113 3.0E-24 T 11-11-2016 IPR003509 Uncharacterised protein family UPF0102 Gferi_RS01470 d8b03a15a58dff7ce8f4d855b75471f8 119 Pfam PF02021 Uncharacterised protein family UPF0102 12 102 1.8E-27 T 11-11-2016 IPR003509 Uncharacterised protein family UPF0102 Gferi_RS01470 d8b03a15a58dff7ce8f4d855b75471f8 119 Hamap MF_00048 UPF0102 protein YraN [yraN]. 5 115 21.311 T 11-11-2016 IPR003509 Uncharacterised protein family UPF0102 Gferi_RS01470 d8b03a15a58dff7ce8f4d855b75471f8 119 SUPERFAMILY SSF52980 11 107 4.83E-23 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Gferi_RS06010 8aa2870349692bca71929e156662e1e9 88 Pfam PF12773 Double zinc ribbon 16 59 1.9E-7 T 11-11-2016 IPR025874 Double zinc ribbon Gferi_RS12455 42350a3e920f11d23b6ca2a75b3b0801 393 SUPERFAMILY SSF53383 1 388 1.65E-97 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS12455 42350a3e920f11d23b6ca2a75b3b0801 393 Pfam PF00155 Aminotransferase class I and II 51 381 6.3E-34 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS12455 42350a3e920f11d23b6ca2a75b3b0801 393 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 387 1.8E-149 T 11-11-2016 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 Gferi_RS12455 42350a3e920f11d23b6ca2a75b3b0801 393 Gene3D G3DSA:3.40.640.10 45 255 3.2E-51 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS12455 42350a3e920f11d23b6ca2a75b3b0801 393 Gene3D G3DSA:3.90.1150.10 256 388 1.4E-42 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS06045 84b14ad6a804d40c7c88c53fdf0b6d49 277 Pfam PF12773 Double zinc ribbon 197 240 2.9E-7 T 11-11-2016 IPR025874 Double zinc ribbon Gferi_RS05410 f7d74f6ac5fdf904159ad740500d19db 147 Gene3D G3DSA:3.40.50.720 9 145 6.9E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05410 f7d74f6ac5fdf904159ad740500d19db 147 Pfam PF02254 TrkA-N domain 11 123 2.2E-27 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Gferi_RS05410 f7d74f6ac5fdf904159ad740500d19db 147 SUPERFAMILY SSF51735 9 142 1.69E-31 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05410 f7d74f6ac5fdf904159ad740500d19db 147 PRINTS PR00335 TrkA potassium uptake protein signature 27 41 2.1E-9 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS05410 f7d74f6ac5fdf904159ad740500d19db 147 PRINTS PR00335 TrkA potassium uptake protein signature 68 78 2.1E-9 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS05410 f7d74f6ac5fdf904159ad740500d19db 147 PRINTS PR00335 TrkA potassium uptake protein signature 10 24 2.1E-9 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS05410 f7d74f6ac5fdf904159ad740500d19db 147 PRINTS PR00335 TrkA potassium uptake protein signature 81 95 2.1E-9 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Gferi_RS06435 df7158ce1db621f70dba8f245607d0a9 389 Pfam PF03773 Predicted permease 34 386 1.4E-81 T 11-11-2016 IPR005524 Predicted permease DUF318 Gferi_RS07570 fc96f569c29e126809abdeebc5d34175 295 SUPERFAMILY SSF161098 87 266 1.7E-24 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07570 fc96f569c29e126809abdeebc5d34175 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 285 3.8E-30 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07570 fc96f569c29e126809abdeebc5d34175 295 Gene3D G3DSA:1.10.3720.10 76 282 4.9E-23 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS21290 fdd6aa8a491e244e4d6ea73524888c25 290 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 286 8.2E-68 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS21290 fdd6aa8a491e244e4d6ea73524888c25 290 Gene3D G3DSA:3.10.310.10 126 278 7.6E-44 T 11-11-2016 Gferi_RS21290 fdd6aa8a491e244e4d6ea73524888c25 290 Pfam PF02567 Phenazine biosynthesis-like protein 9 281 5.5E-62 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS21290 fdd6aa8a491e244e4d6ea73524888c25 290 SUPERFAMILY SSF54506 1 281 1.33E-66 T 11-11-2016 Gferi_RS21290 fdd6aa8a491e244e4d6ea73524888c25 290 Gene3D G3DSA:3.10.310.10 1 125 3.9E-37 T 11-11-2016 Gferi_RS21290 fdd6aa8a491e244e4d6ea73524888c25 290 PIRSF PIRSF016184 1 289 2.2E-78 T 11-11-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 439 456 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 136 155 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 384 402 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 118 136 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 269 288 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 415 430 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 240 256 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 49 74 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 360 378 2.1E-42 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 Pfam PF01019 Gamma-glutamyltranspeptidase 42 535 9.1E-155 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 Gferi_RS13640 bf41a560b948029ad8d20fc97afe826b 540 SUPERFAMILY SSF56235 9 540 2.7E-175 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal Gferi_RS26815 0aa80c1b8d2df23591ed8a1f4a7a0598 325 Gene3D G3DSA:3.90.25.10 186 322 5.0E-36 T 11-11-2016 Gferi_RS26815 0aa80c1b8d2df23591ed8a1f4a7a0598 325 Pfam PF16363 GDP-mannose 4,6 dehydratase 13 315 1.9E-55 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS26815 0aa80c1b8d2df23591ed8a1f4a7a0598 325 SUPERFAMILY SSF51735 9 322 1.03E-82 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS26815 0aa80c1b8d2df23591ed8a1f4a7a0598 325 Gene3D G3DSA:3.40.50.720 6 185 8.4E-53 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05200 a2a08de0cfbe6ab753fb40ca0da3a4a6 233 SUPERFAMILY SSF161098 16 222 5.36E-32 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05200 a2a08de0cfbe6ab753fb40ca0da3a4a6 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 224 8.0E-8 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05200 a2a08de0cfbe6ab753fb40ca0da3a4a6 233 Gene3D G3DSA:1.10.3720.10 17 228 2.0E-27 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 416 438 2.4E-7 T 11-11-2016 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 42 61 2.4E-7 T 11-11-2016 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 Gene3D G3DSA:3.90.700.10 290 403 1.3E-23 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 SUPERFAMILY SSF56425 290 412 3.14E-26 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 Pfam PF00890 FAD binding domain 41 451 3.3E-74 T 11-11-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 Gene3D G3DSA:3.50.50.60 25 267 7.0E-89 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 Gene3D G3DSA:3.50.50.60 408 467 7.0E-89 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 TIGRFAM TIGR01813 flavo_cyto_c: flavocytochrome c 41 464 4.8E-101 T 11-11-2016 IPR010960 Flavocytochrome c GO:0000104|GO:0055114 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 SUPERFAMILY SSF51905 24 293 5.83E-58 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS05280 84f09df12e215af2bc2c418f951d790f 469 SUPERFAMILY SSF51905 411 468 5.83E-58 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS06075 14d693e588ad2d5fdd72ea5eeb73e0fd 331 Pfam PF13353 4Fe-4S single cluster domain 8 93 3.2E-10 T 11-11-2016 Gferi_RS06075 14d693e588ad2d5fdd72ea5eeb73e0fd 331 Gene3D G3DSA:3.20.20.70 3 315 1.3E-76 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS06075 14d693e588ad2d5fdd72ea5eeb73e0fd 331 PIRSF PIRSF037420 1 330 1.9E-96 T 11-11-2016 IPR017200 Coenzyme PQQ synthesis protein E Gferi_RS06075 14d693e588ad2d5fdd72ea5eeb73e0fd 331 Pfam PF13186 Iron-sulfur cluster-binding domain 238 297 2.0E-6 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS06075 14d693e588ad2d5fdd72ea5eeb73e0fd 331 SMART SM00729 1 204 0.0083 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS06075 14d693e588ad2d5fdd72ea5eeb73e0fd 331 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 238 320 1.1E-10 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain Gferi_RS06075 14d693e588ad2d5fdd72ea5eeb73e0fd 331 SUPERFAMILY SSF102114 3 305 5.76E-74 T 11-11-2016 Gferi_RS06075 14d693e588ad2d5fdd72ea5eeb73e0fd 331 Pfam PF04055 Radical SAM superfamily 6 161 2.5E-19 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS04775 eca33b8f46f258e11441fc4be1f3abf8 97 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 3 93 3.6E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS04775 eca33b8f46f258e11441fc4be1f3abf8 97 SUPERFAMILY SSF161098 3 81 2.75E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS04775 eca33b8f46f258e11441fc4be1f3abf8 97 Gene3D G3DSA:1.10.3720.10 4 95 8.9E-9 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS09250 322c2e4e6c4d21dc5cfe23891ffa46b6 170 Gene3D G3DSA:3.30.70.1290 18 159 1.7E-11 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS09250 322c2e4e6c4d21dc5cfe23891ffa46b6 170 SUPERFAMILY SSF143422 17 164 1.44E-19 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS09250 322c2e4e6c4d21dc5cfe23891ffa46b6 170 Pfam PF01797 Transposase IS200 like 67 156 7.8E-5 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS09250 322c2e4e6c4d21dc5cfe23891ffa46b6 170 SMART SM01321 19 158 8.5E-13 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS00135 6cc0d36c63fdc7cb5d51fb5ea7830186 220 Pfam PF11167 Protein of unknown function (DUF2953) 132 181 1.8E-15 T 11-11-2016 IPR021338 Protein of unknown function DUF2953 Gferi_RS24580 aa19799cffaab5916e9d1a672b5b5803 470 Pfam PF02687 FtsX-like permease family 310 462 9.2E-25 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS15580 b95dda4518d2affe1b64accb4bbd558a 175 Pfam PF00583 Acetyltransferase (GNAT) family 64 138 4.0E-12 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS15580 b95dda4518d2affe1b64accb4bbd558a 175 Gene3D G3DSA:3.40.630.30 2 169 1.7E-25 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS15580 b95dda4518d2affe1b64accb4bbd558a 175 SUPERFAMILY SSF55729 2 163 5.68E-28 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS14395 1192b0fd0a60509c064e7d94506b3bfd 231 SUPERFAMILY SSF89562 32 194 9.16E-47 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS14395 1192b0fd0a60509c064e7d94506b3bfd 231 Pfam PF03737 Demethylmenaquinone methyltransferase 35 183 1.6E-46 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS14395 1192b0fd0a60509c064e7d94506b3bfd 231 Gene3D G3DSA:3.50.30.40 32 192 3.9E-52 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS06765 3678464fc3bef10c7f0504c8e3a2e264 257 Gene3D G3DSA:1.10.10.10 192 254 1.6E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06765 3678464fc3bef10c7f0504c8e3a2e264 257 Pfam PF00196 Bacterial regulatory proteins, luxR family 192 246 1.2E-13 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06765 3678464fc3bef10c7f0504c8e3a2e264 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 207 1.1E-8 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06765 3678464fc3bef10c7f0504c8e3a2e264 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 223 1.1E-8 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06765 3678464fc3bef10c7f0504c8e3a2e264 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 223 235 1.1E-8 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS06765 3678464fc3bef10c7f0504c8e3a2e264 257 SUPERFAMILY SSF46894 188 254 3.27E-16 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS06765 3678464fc3bef10c7f0504c8e3a2e264 257 SMART SM00421 190 247 4.8E-13 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Gferi_RS14460 2e61244a53de1bc5338b9f48018efcfa 226 SUPERFAMILY SSF46894 127 224 3.12E-27 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS14460 2e61244a53de1bc5338b9f48018efcfa 226 SMART SM00862 149 222 6.2E-22 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14460 2e61244a53de1bc5338b9f48018efcfa 226 SMART SM00448 3 113 1.0E-40 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14460 2e61244a53de1bc5338b9f48018efcfa 226 Gene3D G3DSA:3.40.50.2300 4 121 6.7E-39 T 11-11-2016 Gferi_RS14460 2e61244a53de1bc5338b9f48018efcfa 226 Pfam PF00072 Response regulator receiver domain 6 112 2.5E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14460 2e61244a53de1bc5338b9f48018efcfa 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 222 2.6E-24 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS14460 2e61244a53de1bc5338b9f48018efcfa 226 SUPERFAMILY SSF52172 4 121 3.13E-37 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS14460 2e61244a53de1bc5338b9f48018efcfa 226 Gene3D G3DSA:1.10.10.10 130 225 1.7E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15485 7f753d47b97712fbe4f49a99ffbf3e67 426 Pfam PF09861 Domain of unknown function (DUF2088) 9 209 4.7E-68 T 11-11-2016 IPR018657 Domain of unknown function DUF2088 Gferi_RS13605 d76ee6d4c2f7c86fe66d01f6cec428d5 64 Pfam PF06107 Bacterial protein of unknown function (DUF951) 6 59 2.8E-27 T 11-11-2016 IPR009296 Protein of unknown function DUF951 Gferi_RS13605 d76ee6d4c2f7c86fe66d01f6cec428d5 64 PIRSF PIRSF037263 1 64 1.3E-25 T 11-11-2016 IPR009296 Protein of unknown function DUF951 Gferi_RS24135 ca9c652abefc4567c1aacdf08e6f5a84 517 SMART SM00857 6 159 2.6E-34 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS24135 ca9c652abefc4567c1aacdf08e6f5a84 517 Gene3D G3DSA:3.40.50.1390 8 127 5.6E-20 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS24135 ca9c652abefc4567c1aacdf08e6f5a84 517 SUPERFAMILY SSF53041 6 159 2.88E-26 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS24135 ca9c652abefc4567c1aacdf08e6f5a84 517 Pfam PF07508 Recombinase 189 302 1.8E-21 T 11-11-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 Gferi_RS24135 ca9c652abefc4567c1aacdf08e6f5a84 517 Pfam PF00239 Resolvase, N terminal domain 8 158 6.2E-22 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 Gferi_RS24135 ca9c652abefc4567c1aacdf08e6f5a84 517 Pfam PF13408 Recombinase zinc beta ribbon domain 315 368 6.2E-11 T 11-11-2016 IPR025827 Recombinase zinc beta ribbon domain Gferi_RS02920 79b4f16a1cfa6cce2f55ff02c9668908 171 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 151 2.4E-30 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS21535 8e4a07633bbef9576b2b1b2680ed427a 129 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 3 60 1.1E-13 T 11-11-2016 IPR022687 DTXR-type HTH domain GO:0003677 Gferi_RS21535 8e4a07633bbef9576b2b1b2680ed427a 129 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 65 121 4.0E-14 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS21535 8e4a07633bbef9576b2b1b2680ed427a 129 SMART SM00529 26 126 2.5E-20 T 11-11-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 Gferi_RS21535 8e4a07633bbef9576b2b1b2680ed427a 129 Gene3D G3DSA:1.10.10.10 2 72 4.3E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21535 8e4a07633bbef9576b2b1b2680ed427a 129 SUPERFAMILY SSF46785 4 64 6.59E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS21535 8e4a07633bbef9576b2b1b2680ed427a 129 SUPERFAMILY SSF47979 65 121 3.53E-14 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS21535 8e4a07633bbef9576b2b1b2680ed427a 129 Gene3D G3DSA:1.10.60.10 77 121 2.2E-13 T 11-11-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Gferi_RS06170 d8b43666186ba49a6ba2479d534f26fb 114 Gene3D G3DSA:2.20.28.10 82 105 6.5E-5 T 11-11-2016 IPR004039 Rubredoxin-type fold Gferi_RS06170 d8b43666186ba49a6ba2479d534f26fb 114 SUPERFAMILY SSF57802 80 105 6.83E-5 T 11-11-2016 Gferi_RS16750 09dce1a91331b165530aa9c5d50f78e7 330 SUPERFAMILY SSF109998 52 235 1.08E-25 T 11-11-2016 IPR027304 Trigger factor/SurA domain Gferi_RS16750 09dce1a91331b165530aa9c5d50f78e7 330 Pfam PF13624 SurA N-terminal domain 19 138 1.3E-14 T 11-11-2016 Gferi_RS16750 09dce1a91331b165530aa9c5d50f78e7 330 Pfam PF13616 PPIC-type PPIASE domain 198 296 4.1E-30 T 11-11-2016 Gferi_RS16750 09dce1a91331b165530aa9c5d50f78e7 330 SUPERFAMILY SSF54534 195 295 4.64E-34 T 11-11-2016 Gferi_RS16750 09dce1a91331b165530aa9c5d50f78e7 330 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 234 255 - T 11-11-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-936440 Gferi_RS16750 09dce1a91331b165530aa9c5d50f78e7 330 Gene3D G3DSA:3.10.50.40 205 305 6.0E-40 T 11-11-2016 Gferi_RS20305 cf84b6065d696e84e11580d8592ce9b4 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 284 1.1E-16 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20305 cf84b6065d696e84e11580d8592ce9b4 295 SUPERFAMILY SSF161098 13 289 2.24E-55 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20305 cf84b6065d696e84e11580d8592ce9b4 295 Gene3D G3DSA:1.10.3720.10 12 277 1.9E-54 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS00640 fb04b1711d0444520d4101a747a10695 178 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 175 5.3E-53 T 11-11-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 Gferi_RS00640 fb04b1711d0444520d4101a747a10695 178 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 47 69 - T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Gferi_RS00640 fb04b1711d0444520d4101a747a10695 178 PIRSF PIRSF000847 1 178 3.6E-52 T 11-11-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 Gferi_RS00640 fb04b1711d0444520d4101a747a10695 178 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 69 1.1E-18 T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Gferi_RS04635 02132ffaf655e720cd9457686dcff6c9 278 SUPERFAMILY SSF56563 116 277 2.09E-5 T 11-11-2016 Gferi_RS04635 02132ffaf655e720cd9457686dcff6c9 278 PIRSF PIRSF019254 1 278 5.2E-71 T 11-11-2016 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 Gferi_RS04635 02132ffaf655e720cd9457686dcff6c9 278 Pfam PF04454 Encapsulating protein for peroxidase 1 264 1.4E-78 T 11-11-2016 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 Gferi_RS14535 065228917f1cc9ecc8dc192e4a299dfb 147 Gene3D G3DSA:3.30.1380.10 16 142 5.2E-24 T 11-11-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 Gferi_RS14535 065228917f1cc9ecc8dc192e4a299dfb 147 SUPERFAMILY SSF55166 16 137 1.06E-21 T 11-11-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 Gferi_RS14535 065228917f1cc9ecc8dc192e4a299dfb 147 Pfam PF08291 Peptidase M15 15 93 4.9E-19 T 11-11-2016 IPR013230 Peptidase M15A, C-terminal MetaCyc: PWY-6470 Gferi_RS04225 05addee777066545024c3775ce42b202 255 SUPERFAMILY SSF46785 5 72 1.43E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04225 05addee777066545024c3775ce42b202 255 SUPERFAMILY SSF100950 76 233 5.34E-24 T 11-11-2016 Gferi_RS04225 05addee777066545024c3775ce42b202 255 Pfam PF00455 DeoR C terminal sensor domain 76 231 1.5E-40 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain Gferi_RS04225 05addee777066545024c3775ce42b202 255 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 1.5E-18 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04225 05addee777066545024c3775ce42b202 255 SMART SM00420 6 58 9.6E-20 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04225 05addee777066545024c3775ce42b202 255 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-11-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 Gferi_RS04225 05addee777066545024c3775ce42b202 255 SMART SM01134 73 233 1.5E-49 T 11-11-2016 Gferi_RS04225 05addee777066545024c3775ce42b202 255 Gene3D G3DSA:3.40.50.1360 77 215 2.3E-10 T 11-11-2016 Gferi_RS04225 05addee777066545024c3775ce42b202 255 Gene3D G3DSA:1.10.10.10 3 55 9.7E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS04225 05addee777066545024c3775ce42b202 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-10 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS04225 05addee777066545024c3775ce42b202 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-10 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 Gferi_RS07610 d892e1548a00ec282cf449c705e4c2e3 72 Gene3D G3DSA:3.30.70.100 1 66 2.3E-13 T 11-11-2016 Gferi_RS07610 d892e1548a00ec282cf449c705e4c2e3 72 SUPERFAMILY SSF55008 1 64 4.58E-14 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS07610 d892e1548a00ec282cf449c705e4c2e3 72 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 11-11-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Gferi_RS07610 d892e1548a00ec282cf449c705e4c2e3 72 Pfam PF00403 Heavy-metal-associated domain 4 65 1.7E-10 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Gferi_RS11180 291f62df41228c473c9ca00e5d66d215 322 Gene3D G3DSA:3.30.540.10 1 173 1.8E-63 T 11-11-2016 Gferi_RS11180 291f62df41228c473c9ca00e5d66d215 322 Gene3D G3DSA:3.30.540.10 174 319 2.5E-45 T 11-11-2016 Gferi_RS11180 291f62df41228c473c9ca00e5d66d215 322 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 312 6.7E-143 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Gferi_RS11180 291f62df41228c473c9ca00e5d66d215 322 PIRSF PIRSF004532 1 322 6.6E-144 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Gferi_RS11180 291f62df41228c473c9ca00e5d66d215 322 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 319 2.6E-131 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Gferi_RS11180 291f62df41228c473c9ca00e5d66d215 322 SUPERFAMILY SSF56655 1 315 4.95E-112 T 11-11-2016 Gferi_RS05790 bab93874405e9c7f495f7d1c91119396 304 Pfam PF00924 Mechanosensitive ion channel 63 271 9.4E-32 T 11-11-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Gferi_RS05790 bab93874405e9c7f495f7d1c91119396 304 SUPERFAMILY SSF82689 173 278 7.45E-8 T 11-11-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Gferi_RS05790 bab93874405e9c7f495f7d1c91119396 304 Gene3D G3DSA:2.30.30.60 121 169 1.5E-13 T 11-11-2016 Gferi_RS05790 bab93874405e9c7f495f7d1c91119396 304 SUPERFAMILY SSF82861 20 104 3.27E-8 T 11-11-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Gferi_RS05790 bab93874405e9c7f495f7d1c91119396 304 SUPERFAMILY SSF50182 105 168 1.47E-13 T 11-11-2016 IPR010920 LSM domain Gferi_RS26910 3ac0567b277bcd8a9548892bf0079549 113 SUPERFAMILY SSF158622 1 107 1.7E-30 T 11-11-2016 IPR023378 YheA/YmcA-like domain Gferi_RS26910 3ac0567b277bcd8a9548892bf0079549 113 Gene3D G3DSA:1.20.1500.10 1 107 4.2E-31 T 11-11-2016 IPR023378 YheA/YmcA-like domain Gferi_RS26910 3ac0567b277bcd8a9548892bf0079549 113 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 3 106 1.8E-27 T 11-11-2016 IPR010368 Control of competence regulator ComK, YlbF/YmcA Gferi_RS13130 8ba3dddeebb5e24a4be386607912d50d 201 Pfam PF12822 Protein of unknown function (DUF3816) 11 175 1.3E-8 T 11-11-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 Gferi_RS15870 ae70e8ed22764f5407c850795ac24849 294 PIRSF PIRSF018982 44 294 1.3E-104 T 11-11-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Gferi_RS15870 ae70e8ed22764f5407c850795ac24849 294 Hamap MF_00601 Ethanolamine ammonia-lyase light chain [eutC]. 57 293 41.217 T 11-11-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Gferi_RS15870 ae70e8ed22764f5407c850795ac24849 294 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 68 293 1.7E-82 T 11-11-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Gferi_RS00515 c7452e624af909d4af2ce1deb4dda151 321 SUPERFAMILY SSF51658 81 273 1.12E-11 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS00515 c7452e624af909d4af2ce1deb4dda151 321 Pfam PF03851 UV-endonuclease UvdE 5 276 7.2E-87 T 11-11-2016 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 Gferi_RS00515 c7452e624af909d4af2ce1deb4dda151 321 TIGRFAM TIGR00629 uvde: UV damage endonuclease UvdE 1 305 3.1E-81 T 11-11-2016 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 Gferi_RS00515 c7452e624af909d4af2ce1deb4dda151 321 Gene3D G3DSA:3.20.20.150 86 231 7.3E-4 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS14055 e7d6d4bb589093fafb4333de67cc0136 188 SUPERFAMILY SSF46689 5 62 2.05E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14055 e7d6d4bb589093fafb4333de67cc0136 188 Gene3D G3DSA:1.10.357.10 21 179 3.5E-16 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS14055 e7d6d4bb589093fafb4333de67cc0136 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 54 2.8E-6 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS04055 ddbddea180b81e2962c1dd95bc874132 190 SUPERFAMILY SSF102829 7 89 1.44E-16 T 11-11-2016 IPR007838 Cell division protein ZapA-like Gferi_RS04055 ddbddea180b81e2962c1dd95bc874132 190 Pfam PF05164 Cell division protein ZapA 7 85 4.6E-19 T 11-11-2016 IPR007838 Cell division protein ZapA-like Gferi_RS05050 56e818f8ebdccf472056f102cfc594a1 455 Pfam PF01098 Cell cycle protein 84 421 1.7E-15 T 11-11-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 Gferi_RS14010 9600f3fa13b1c363099b37143a9b936a 91 SUPERFAMILY SSF46689 53 88 3.85E-5 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14010 9600f3fa13b1c363099b37143a9b936a 91 Gene3D G3DSA:1.10.10.60 53 86 2.1E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS14010 9600f3fa13b1c363099b37143a9b936a 91 Pfam PF12833 Helix-turn-helix domain 44 88 8.5E-8 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS25300 10e4ba862550bb5d2d462b8bda355baf 417 Pfam PF09861 Domain of unknown function (DUF2088) 7 203 1.9E-72 T 11-11-2016 IPR018657 Domain of unknown function DUF2088 Gferi_RS04115 067f277dad37ca6ebd93310507a23c1b 386 Pfam PF12683 Protein of unknown function (DUF3798) 41 312 2.8E-123 T 11-11-2016 IPR024258 Protein of unknown function DUF3798 Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 SUPERFAMILY SSF103190 91 206 4.32E-7 T 11-11-2016 IPR029151 Periplasmic sensor domain-like Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 307 533 7.8E-45 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 SMART SM00283 260 535 4.4E-71 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 387 416 2.4E-20 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 358 385 2.4E-20 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 281 310 2.4E-20 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 Gene3D G3DSA:3.30.450.20 112 204 5.1E-18 T 11-11-2016 Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 Gene3D G3DSA:1.10.287.950 275 491 3.7E-53 T 11-11-2016 Gferi_RS08715 dbfe8adc1089896a9fb0e3c9e70f7ff0 536 SUPERFAMILY SSF58104 266 535 1.4E-61 T 11-11-2016 Gferi_RS09320 b37858942421afd627ef05dacb45c31b 119 Gene3D G3DSA:3.40.50.2300 1 118 4.4E-39 T 11-11-2016 Gferi_RS09320 b37858942421afd627ef05dacb45c31b 119 SMART SM00448 1 113 2.3E-35 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS09320 b37858942421afd627ef05dacb45c31b 119 SUPERFAMILY SSF52172 1 118 1.42E-37 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS09320 b37858942421afd627ef05dacb45c31b 119 Pfam PF00072 Response regulator receiver domain 3 113 9.9E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS01425 c197b1597e971875b852c7564628a1b8 235 Pfam PF10979 Protein of unknown function (DUF2786) 4 41 5.9E-10 T 11-11-2016 IPR024498 Domain of unknown function DUF2786 Gferi_RS00370 17ee2b45ccf6c03591ec531401ab1487 144 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 4.1E-6 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00370 17ee2b45ccf6c03591ec531401ab1487 144 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00370 17ee2b45ccf6c03591ec531401ab1487 144 SUPERFAMILY SSF54523 9 85 7.85E-6 T 11-11-2016 Gferi_RS08720 977a41714bef1f0872a046848d40ace8 116 Gene3D G3DSA:3.40.1440.10 18 110 1.3E-18 T 11-11-2016 IPR027299 GIY-YIG domain Gferi_RS12645 512b432666381c3dbc962da7e092b92e 247 PIRSF PIRSF029033 2 247 5.1E-36 T 11-11-2016 IPR016907 Uncharacterised conserved protein UCP029033, periplasmic protein Gferi_RS12645 512b432666381c3dbc962da7e092b92e 247 Pfam PF04402 Protein of unknown function (DUF541) 43 244 2.3E-27 T 11-11-2016 IPR007497 Protein of unknown function DUF541 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 Pfam PF00209 Sodium:neurotransmitter symporter family 155 450 4.5E-41 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 Pfam PF00209 Sodium:neurotransmitter symporter family 10 126 3.3E-31 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 91 117 1.1E-18 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 388 408 1.1E-18 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 47 66 1.1E-18 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 430 450 1.1E-18 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 18 39 1.1E-18 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 SUPERFAMILY SSF161070 10 449 3.66E-149 T 11-11-2016 Gferi_RS18085 2b7efa966cfddfa052ac042c27cfb228 450 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 34 48 - T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Gferi_RS06805 4ce0ec5fc86938113661241deb125114 237 Pfam PF12833 Helix-turn-helix domain 155 233 6.9E-14 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS06805 4ce0ec5fc86938113661241deb125114 237 SUPERFAMILY SSF46689 135 183 5.47E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06805 4ce0ec5fc86938113661241deb125114 237 SMART SM00342 149 232 5.1E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 Gferi_RS06805 4ce0ec5fc86938113661241deb125114 237 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 186 228 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 Gferi_RS06805 4ce0ec5fc86938113661241deb125114 237 Gene3D G3DSA:1.10.10.60 186 234 1.1E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06805 4ce0ec5fc86938113661241deb125114 237 SUPERFAMILY SSF46689 186 234 4.44E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS06805 4ce0ec5fc86938113661241deb125114 237 Gene3D G3DSA:1.10.10.60 134 183 2.5E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS12480 06f063983496e64dfb730970cb9e69d7 447 Pfam PF01554 MatE 23 184 4.6E-32 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS12480 06f063983496e64dfb730970cb9e69d7 447 Pfam PF01554 MatE 245 405 7.0E-27 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS12480 06f063983496e64dfb730970cb9e69d7 447 PIRSF PIRSF006603 1 445 7.1E-93 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS12480 06f063983496e64dfb730970cb9e69d7 447 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 410 8.9E-67 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS13960 bedd56c7733ceb63ad5b1b4b1d1b019a 269 Pfam PF13276 HTH-like domain 31 85 8.7E-14 T 11-11-2016 IPR025948 HTH-like domain Gferi_RS13960 bedd56c7733ceb63ad5b1b4b1d1b019a 269 Pfam PF00665 Integrase core domain 109 218 1.9E-22 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 Gferi_RS13960 bedd56c7733ceb63ad5b1b4b1d1b019a 269 SUPERFAMILY SSF53098 109 266 1.34E-36 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS13960 bedd56c7733ceb63ad5b1b4b1d1b019a 269 Gene3D G3DSA:3.30.420.10 103 258 2.2E-35 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 Gene3D G3DSA:3.40.1690.10 226 360 3.6E-59 T 11-11-2016 IPR029025 Type III secretion system substrate exporter, C-terminal Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 14 360 1.0E-125 T 11-11-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 216 234 1.3E-38 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 16 38 1.3E-38 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 310 331 1.3E-38 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 280 295 1.3E-38 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 236 253 1.3E-38 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 SUPERFAMILY SSF160544 252 359 1.57E-40 T 11-11-2016 IPR029025 Type III secretion system substrate exporter, C-terminal Gferi_RS00880 0a8de9512aa1b369a47bcc518a43f723 362 Pfam PF01312 FlhB HrpN YscU SpaS Family 13 355 2.2E-129 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 Gferi_RS00065 045db27e6418614267f28f1c457c0511 273 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 52 198 7.8E-39 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Gferi_RS00065 045db27e6418614267f28f1c457c0511 273 SUPERFAMILY SSF52518 15 256 6.3E-80 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS00065 045db27e6418614267f28f1c457c0511 273 Gene3D G3DSA:3.40.50.970 16 229 3.7E-82 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS10780 bbab18225381dd585d4bd18ea9ed59eb 536 SUPERFAMILY SSF64518 147 529 3.92E-25 T 11-11-2016 Gferi_RS10780 bbab18225381dd585d4bd18ea9ed59eb 536 Pfam PF00460 Flagella basal body rod protein 7 37 5.0E-7 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 Gferi_RS10780 bbab18225381dd585d4bd18ea9ed59eb 536 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 6 529 1.9E-114 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Gferi_RS10780 bbab18225381dd585d4bd18ea9ed59eb 536 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 472 529 1.3E-15 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Gferi_RS10780 bbab18225381dd585d4bd18ea9ed59eb 536 PRINTS PR01005 Flagellar hook-associated protein signature 13 36 5.4E-16 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Gferi_RS10780 bbab18225381dd585d4bd18ea9ed59eb 536 PRINTS PR01005 Flagellar hook-associated protein signature 161 185 5.4E-16 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Gferi_RS10780 bbab18225381dd585d4bd18ea9ed59eb 536 PRINTS PR01005 Flagellar hook-associated protein signature 497 521 5.4E-16 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 Gferi_RS12670 7687c258199475921ee69145636710fa 246 Gene3D G3DSA:3.40.33.10 122 235 1.9E-12 T 11-11-2016 IPR014044 CAP domain Gferi_RS12670 7687c258199475921ee69145636710fa 246 Pfam PF00188 Cysteine-rich secretory protein family 125 242 2.1E-17 T 11-11-2016 IPR014044 CAP domain Gferi_RS12670 7687c258199475921ee69145636710fa 246 SUPERFAMILY SSF55797 120 242 3.92E-23 T 11-11-2016 IPR014044 CAP domain Gferi_RS11535 a69b8048ae2d2fd529dfa1be3803461a 345 SUPERFAMILY SSF51735 181 310 2.06E-17 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11535 a69b8048ae2d2fd529dfa1be3803461a 345 Gene3D G3DSA:3.40.50.720 182 296 5.7E-15 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS11535 a69b8048ae2d2fd529dfa1be3803461a 345 SUPERFAMILY SSF50129 87 194 6.36E-5 T 11-11-2016 IPR011032 GroES-like Gferi_RS06295 f877ffb6d45e3590323c9de0b21b319a 391 SMART SM00331 4 219 5.9E-4 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS06295 f877ffb6d45e3590323c9de0b21b319a 391 SUPERFAMILY SSF81606 11 220 1.7E-9 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS06295 f877ffb6d45e3590323c9de0b21b319a 391 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 30 219 8.7E-19 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS13505 85944ccc3b6a8c6dbd943ebd79d1e1aa 495 Pfam PF00474 Sodium:solute symporter family 35 440 5.3E-48 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS15700 b30b54853d92e2fb7961df306f1537e5 403 PIRSF PIRSF033271 1 403 6.6E-168 T 11-11-2016 IPR008322 Uncharacterised protein family UPF0261 Gferi_RS15700 b30b54853d92e2fb7961df306f1537e5 403 Pfam PF06792 Uncharacterised protein family (UPF0261) 2 401 6.3E-171 T 11-11-2016 IPR008322 Uncharacterised protein family UPF0261 Gferi_RS15700 b30b54853d92e2fb7961df306f1537e5 403 Hamap MF_00677 UPF0261 protein . 1 403 47.674 T 11-11-2016 IPR008322 Uncharacterised protein family UPF0261 Gferi_RS02635 6fd966d75656b0c4bc8c35280330dce0 319 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 12 309 1.6E-71 T 11-11-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 Gferi_RS02635 6fd966d75656b0c4bc8c35280330dce0 319 Pfam PF03116 NQR2, RnfD, RnfE family 12 307 1.3E-88 T 11-11-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 Gferi_RS12655 7ccd35b69c7f05d327419b44fa7718a3 361 Pfam PF04143 Sulphur transport 206 319 7.6E-12 T 11-11-2016 IPR007272 Sulphur transport domain Gferi_RS12655 7ccd35b69c7f05d327419b44fa7718a3 361 TIGRFAM TIGR04112 seleno_YedE: putative selenium metabolism protein, YedE family 7 343 2.5E-155 T 11-11-2016 IPR026366 Putative selenium metabolism protein, YedE family Gferi_RS25560 35b9ea1b0390b35acc0a3be1c233a296 310 Gene3D G3DSA:3.40.50.720 1 187 7.9E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25560 35b9ea1b0390b35acc0a3be1c233a296 310 Gene3D G3DSA:1.10.1040.10 188 305 5.1E-40 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Gferi_RS25560 35b9ea1b0390b35acc0a3be1c233a296 310 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 151 5.1E-38 T 11-11-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Gferi_RS25560 35b9ea1b0390b35acc0a3be1c233a296 310 SUPERFAMILY SSF51735 1 157 5.89E-22 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS25560 35b9ea1b0390b35acc0a3be1c233a296 310 SUPERFAMILY SSF48179 179 302 7.48E-33 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 Gferi_RS25560 35b9ea1b0390b35acc0a3be1c233a296 310 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 303 3.8E-84 T 11-11-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Gferi_RS25560 35b9ea1b0390b35acc0a3be1c233a296 310 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 180 301 1.1E-36 T 11-11-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Gferi_RS19505 479568f50aa9fa1bc71b92fde91f1746 885 Pfam PF02687 FtsX-like permease family 283 403 3.8E-13 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS19505 479568f50aa9fa1bc71b92fde91f1746 885 Pfam PF02687 FtsX-like permease family 759 866 1.2E-12 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS12945 f178e2c986601376c4ef586a3625c351 209 Pfam PF02163 Peptidase family M50 126 161 1.7E-8 T 11-11-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 Gferi_RS07675 6bddc4f27a3e6cf0e412ff6d6649e29e 300 SUPERFAMILY SSF55383 40 88 5.89E-5 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS07675 6bddc4f27a3e6cf0e412ff6d6649e29e 300 Pfam PF07833 Copper amine oxidase N-terminal domain 65 150 1.3E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS07675 6bddc4f27a3e6cf0e412ff6d6649e29e 300 Pfam PF07833 Copper amine oxidase N-terminal domain 41 94 1.6E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS05700 e9776d058435e09752c2dd5ddc09e883 468 SUPERFAMILY SSF56519 46 139 3.69E-12 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Gferi_RS05700 e9776d058435e09752c2dd5ddc09e883 468 Gene3D G3DSA:3.90.1310.10 72 147 3.0E-12 T 11-11-2016 Gferi_RS05700 e9776d058435e09752c2dd5ddc09e883 468 Pfam PF00905 Penicillin binding protein transpeptidase domain 157 460 1.6E-70 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Gferi_RS05700 e9776d058435e09752c2dd5ddc09e883 468 Gene3D G3DSA:3.40.710.10 148 466 3.3E-102 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS05700 e9776d058435e09752c2dd5ddc09e883 468 SUPERFAMILY SSF56601 143 466 2.73E-91 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS09610 12d7bb575ccd1898395a5e26ea1cd56c 405 SUPERFAMILY SSF89796 5 405 2.62E-113 T 11-11-2016 IPR023606 CoA-transferase family III domain Gferi_RS09610 12d7bb575ccd1898395a5e26ea1cd56c 405 Gene3D G3DSA:3.30.1540.10 225 313 3.7E-18 T 11-11-2016 Gferi_RS09610 12d7bb575ccd1898395a5e26ea1cd56c 405 Gene3D G3DSA:3.40.50.10540 4 217 3.6E-100 T 11-11-2016 IPR023606 CoA-transferase family III domain Gferi_RS09610 12d7bb575ccd1898395a5e26ea1cd56c 405 Gene3D G3DSA:3.40.50.10540 314 405 3.6E-100 T 11-11-2016 IPR023606 CoA-transferase family III domain Gferi_RS09610 12d7bb575ccd1898395a5e26ea1cd56c 405 Pfam PF02515 CoA-transferase family III 7 381 1.0E-103 T 11-11-2016 IPR003673 CoA-transferase family III GO:0003824 Gferi_RS08400 62acfa2944ecddb157eb28e51d09b72d 347 Pfam PF05145 Putative ammonia monooxygenase 28 341 5.7E-51 T 11-11-2016 IPR007820 AbrB family GO:0010468|GO:0016021 Gferi_RS08400 62acfa2944ecddb157eb28e51d09b72d 347 PIRSF PIRSF038991 1 347 1.2E-76 T 11-11-2016 IPR007820 AbrB family GO:0010468|GO:0016021 Gferi_RS08400 62acfa2944ecddb157eb28e51d09b72d 347 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 4 156 3.9E-31 T 11-11-2016 IPR017516 AbrB duplication Gferi_RS08060 8e7bf65d5c27e1373f956b56b816972a 87 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 5 51 2.1E-7 T 11-11-2016 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0071436 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS16900 8e7bf65d5c27e1373f956b56b816972a 87 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 5 51 2.1E-7 T 11-11-2016 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0071436 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 Gferi_RS22770 96ea24d1a5150b58dfd9478cedcbdaac 203 Pfam PF08241 Methyltransferase domain 27 125 1.2E-14 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Gferi_RS22770 96ea24d1a5150b58dfd9478cedcbdaac 203 SUPERFAMILY SSF53335 24 154 1.41E-21 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS22770 96ea24d1a5150b58dfd9478cedcbdaac 203 Gene3D G3DSA:3.40.50.150 14 171 1.3E-25 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS10650 2c10893fd3c67f22c41117d44daadc82 215 Gene3D G3DSA:3.40.50.1000 63 213 1.2E-40 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS10650 2c10893fd3c67f22c41117d44daadc82 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 181 3.6E-46 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS10650 2c10893fd3c67f22c41117d44daadc82 215 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 6 175 1.8E-11 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS10650 2c10893fd3c67f22c41117d44daadc82 215 SUPERFAMILY SSF56784 3 213 1.23E-57 T 11-11-2016 IPR023214 HAD-like domain Gferi_RS10650 2c10893fd3c67f22c41117d44daadc82 215 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 6 181 2.0E-10 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 Gferi_RS16660 02e19a238f23fac5f8928c4822b5bb4b 470 Pfam PF03553 Na+/H+ antiporter family 161 454 1.9E-61 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS16660 02e19a238f23fac5f8928c4822b5bb4b 470 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 8 458 9.5E-153 T 11-11-2016 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 Gferi_RS22615 0351fbf5119d119128ffa7ee01e86d08 478 SUPERFAMILY SSF142764 38 476 1.96E-64 T 11-11-2016 Gferi_RS22615 0351fbf5119d119128ffa7ee01e86d08 478 Pfam PF07005 Putative sugar-binding N-terminal domain 38 280 2.2E-50 T 11-11-2016 IPR010737 Putative sugar-binding, N-terminal domain Gferi_RS22615 0351fbf5119d119128ffa7ee01e86d08 478 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 304 469 1.2E-34 T 11-11-2016 IPR031475 Putative nucleotide-binding C-terminal domain Gferi_RS15860 b0ace05816de68599bde09330fbea24f 454 Gene3D G3DSA:3.20.20.70 143 453 1.5E-161 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS15860 b0ace05816de68599bde09330fbea24f 454 PIRSF PIRSF018788 1 454 1.6E-241 T 11-11-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Gferi_RS15860 b0ace05816de68599bde09330fbea24f 454 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 443 6.6E-217 T 11-11-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 Gferi_RS15860 b0ace05816de68599bde09330fbea24f 454 Gene3D G3DSA:1.10.220.70 55 141 1.7E-36 T 11-11-2016 Gferi_RS15860 b0ace05816de68599bde09330fbea24f 454 Gene3D G3DSA:2.30.170.30 1 54 1.3E-23 T 11-11-2016 Gferi_RS06065 0e902248f5257e498848dc0306553c96 161 SMART SM00344 2 118 0.0067 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 Gferi_RS06065 0e902248f5257e498848dc0306553c96 161 SUPERFAMILY SSF46785 1 65 7.16E-8 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06065 0e902248f5257e498848dc0306553c96 161 Gene3D G3DSA:1.10.10.10 1 53 2.0E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS06065 0e902248f5257e498848dc0306553c96 161 Pfam PF13404 AsnC-type helix-turn-helix domain 2 46 6.2E-8 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 Gferi_RS02915 6e239e6a2d1f5cae39a76e8eac46b555 429 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 421 2.0E-124 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS02915 6e239e6a2d1f5cae39a76e8eac46b555 429 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 418 5.1E-112 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS02915 6e239e6a2d1f5cae39a76e8eac46b555 429 PIRSF PIRSF006066 5 429 8.3E-130 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS06185 277ef983e61517b9b404d36fa2d32fd4 280 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 235 5.9E-42 T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Gferi_RS06185 277ef983e61517b9b404d36fa2d32fd4 280 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 4 230 6.3E-58 T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 Gferi_RS16155 55328c697d040419d96bc07f0abae966 304 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 92 303 8.7E-66 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS16155 55328c697d040419d96bc07f0abae966 304 Gene3D G3DSA:3.90.850.10 85 304 4.6E-82 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS16155 55328c697d040419d96bc07f0abae966 304 SUPERFAMILY SSF56529 86 303 1.31E-72 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS08370 f5caffe47f35536ff4d858636cd4805a 342 Gene3D G3DSA:3.40.50.2300 41 160 2.9E-33 T 11-11-2016 Gferi_RS08370 f5caffe47f35536ff4d858636cd4805a 342 Gene3D G3DSA:3.40.50.2300 161 321 5.5E-42 T 11-11-2016 Gferi_RS08370 f5caffe47f35536ff4d858636cd4805a 342 SUPERFAMILY SSF53822 43 337 4.36E-66 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS08370 f5caffe47f35536ff4d858636cd4805a 342 Pfam PF13407 Periplasmic binding protein domain 47 311 9.3E-56 T 11-11-2016 IPR025997 Periplasmic binding protein Gferi_RS20300 ea9727924a53a7d744f2b2b621a43782 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 278 2.8E-14 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20300 ea9727924a53a7d744f2b2b621a43782 287 SUPERFAMILY SSF161098 50 271 2.22E-50 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20300 ea9727924a53a7d744f2b2b621a43782 287 Gene3D G3DSA:1.10.3720.10 56 278 4.9E-53 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 17 4.1E-19 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 411 440 4.1E-19 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 382 409 4.1E-19 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 Gene3D G3DSA:1.10.287.950 303 516 7.7E-43 T 11-11-2016 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 344 540 6.1E-37 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 Pfam PF00672 HAMP domain 185 251 5.0E-18 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 SMART SM00283 277 559 2.6E-43 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 SMART SM00304 203 255 4.5E-15 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 SUPERFAMILY SSF58104 290 559 3.01E-56 T 11-11-2016 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 SUPERFAMILY SSF58104 223 257 3.01E-56 T 11-11-2016 Gferi_RS13490 3c567e485fb1ffe4b3f10fdd52a7666a 560 Pfam PF12729 Four helix bundle sensory module for signal transduction 2 166 5.6E-14 T 11-11-2016 IPR024478 4HB MCP domain Gferi_RS25235 cd9d1b8d0c38b036a77b902a71a748cf 227 Pfam PF04402 Protein of unknown function (DUF541) 22 218 1.2E-37 T 11-11-2016 IPR007497 Protein of unknown function DUF541 Gferi_RS04315 c18cea7d7f99d66c86b90442b49d2e87 67 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 43 57 - T 11-11-2016 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 Gferi_RS04315 c18cea7d7f99d66c86b90442b49d2e87 67 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 20 29 - T 11-11-2016 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 Gferi_RS04315 c18cea7d7f99d66c86b90442b49d2e87 67 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 5 64 2.7E-25 T 11-11-2016 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 Gferi_RS25370 5c19abb6114af9d05db6afe6689a5de8 290 SUPERFAMILY SSF52402 33 232 6.4E-45 T 11-11-2016 Gferi_RS25370 5c19abb6114af9d05db6afe6689a5de8 290 Pfam PF01171 PP-loop family 57 220 6.4E-16 T 11-11-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Gferi_RS25370 5c19abb6114af9d05db6afe6689a5de8 290 PIRSF PIRSF004976 10 289 2.2E-66 T 11-11-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 Reactome: R-HSA-6782315 Gferi_RS25370 5c19abb6114af9d05db6afe6689a5de8 290 Gene3D G3DSA:3.40.50.620 40 219 7.9E-19 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 22.335 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 59 9.2E-24 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 8.3E-16 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 8.3E-16 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 8.3E-16 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 8.3E-16 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 11-11-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 43 2.0E-8 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS02315 29eb8d0202f24ebd8472057bcef82730 60 Pfam PF01165 Ribosomal protein S21 3 56 5.8E-24 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Gferi_RS26225 2fe9730c87261b0e2e4d656685376719 313 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 5 312 25.337 T 11-11-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 Gferi_RS26225 2fe9730c87261b0e2e4d656685376719 313 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 10 311 2.7E-101 T 11-11-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 Gferi_RS26225 2fe9730c87261b0e2e4d656685376719 313 Pfam PF03116 NQR2, RnfD, RnfE family 7 310 1.3E-116 T 11-11-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 Gferi_RS26170 999ce3e7d650a8e08cb897310f6179c8 190 Pfam PF01965 DJ-1/PfpI family 4 167 5.7E-28 T 11-11-2016 IPR002818 DJ-1/PfpI Gferi_RS26170 999ce3e7d650a8e08cb897310f6179c8 190 SUPERFAMILY SSF52317 3 188 8.79E-44 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS26170 999ce3e7d650a8e08cb897310f6179c8 190 Gene3D G3DSA:3.40.50.880 3 189 6.7E-58 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS11890 d4b04982db8d178193f7b22682e76f28 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 224 9.6E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS11890 d4b04982db8d178193f7b22682e76f28 230 SMART SM00862 149 224 4.0E-26 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS11890 d4b04982db8d178193f7b22682e76f28 230 Pfam PF00072 Response regulator receiver domain 6 114 2.8E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS11890 d4b04982db8d178193f7b22682e76f28 230 SUPERFAMILY SSF52172 2 130 4.13E-45 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS11890 d4b04982db8d178193f7b22682e76f28 230 Gene3D G3DSA:3.40.50.2300 3 126 1.2E-42 T 11-11-2016 Gferi_RS11890 d4b04982db8d178193f7b22682e76f28 230 SUPERFAMILY SSF46894 126 225 6.8E-31 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS11890 d4b04982db8d178193f7b22682e76f28 230 SMART SM00448 4 114 2.2E-44 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS11890 d4b04982db8d178193f7b22682e76f28 230 Gene3D G3DSA:1.10.10.10 128 226 7.6E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11690 6df3f031665897eeb2193577bf75c3bb 237 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS11690 6df3f031665897eeb2193577bf75c3bb 237 SUPERFAMILY SSF52540 5 232 8.12E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11690 6df3f031665897eeb2193577bf75c3bb 237 Pfam PF00005 ABC transporter 24 172 2.4E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS11690 6df3f031665897eeb2193577bf75c3bb 237 SMART SM00382 33 221 3.8E-16 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11690 6df3f031665897eeb2193577bf75c3bb 237 Gene3D G3DSA:3.40.50.300 4 225 1.2E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09880 aab233068b35a701d6f4e827e3f31a32 425 PIRSF PIRSF006066 1 425 5.4E-144 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS09880 aab233068b35a701d6f4e827e3f31a32 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 414 4.9E-116 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS09880 aab233068b35a701d6f4e827e3f31a32 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 420 8.9E-134 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS12060 17cf828f25eed99ec56cfb1716fb892d 303 SUPERFAMILY SSF53448 5 243 1.27E-21 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS12060 17cf828f25eed99ec56cfb1716fb892d 303 Pfam PF03407 Nucleotide-diphospho-sugar transferase 33 173 3.8E-9 T 11-11-2016 IPR005069 Nucleotide-diphospho-sugar transferase Gferi_RS12060 17cf828f25eed99ec56cfb1716fb892d 303 Gene3D G3DSA:3.90.550.10 2 196 4.1E-7 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS15405 e9b22d415905c7603035ce7c65460a91 208 Pfam PF01966 HD domain 29 149 8.1E-21 T 11-11-2016 IPR006674 HD domain Gferi_RS15405 e9b22d415905c7603035ce7c65460a91 208 TIGRFAM TIGR00277 HDIG: HDIG domain 29 117 4.1E-7 T 11-11-2016 IPR006675 HDIG domain Gferi_RS15405 e9b22d415905c7603035ce7c65460a91 208 SUPERFAMILY SSF109604 16 183 2.51E-39 T 11-11-2016 Gferi_RS15405 e9b22d415905c7603035ce7c65460a91 208 SMART SM00471 23 158 5.1E-9 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS15405 e9b22d415905c7603035ce7c65460a91 208 Gene3D G3DSA:1.10.3210.10 23 198 7.8E-27 T 11-11-2016 IPR006674 HD domain Gferi_RS05240 25d2f8e13509f8451ee406ffc520d7b1 113 SMART SM01078 2 96 1.2E-36 T 11-11-2016 IPR014925 Uncharacterised domain CGGC-dom Gferi_RS05240 25d2f8e13509f8451ee406ffc520d7b1 113 Pfam PF08821 CGGC domain 2 96 9.8E-18 T 11-11-2016 IPR014925 Uncharacterised domain CGGC-dom Gferi_RS21855 48b219eb468f55405bf4b238a61e2ee8 318 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 231 295 2.5E-17 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS21855 48b219eb468f55405bf4b238a61e2ee8 318 SUPERFAMILY SSF52540 1 251 8.8E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21855 48b219eb468f55405bf4b238a61e2ee8 318 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS21855 48b219eb468f55405bf4b238a61e2ee8 318 Gene3D G3DSA:3.40.50.300 2 253 6.2E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21855 48b219eb468f55405bf4b238a61e2ee8 318 SMART SM00382 30 229 9.1E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS21855 48b219eb468f55405bf4b238a61e2ee8 318 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 230 314 6.0E-29 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Gferi_RS21855 48b219eb468f55405bf4b238a61e2ee8 318 Pfam PF00005 ABC transporter 21 179 1.9E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14750 2408f3a40f6dd934770b15e780043370 127 Gene3D G3DSA:1.10.10.10 1 76 9.0E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14750 2408f3a40f6dd934770b15e780043370 127 SUPERFAMILY SSF46785 5 104 6.3E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14750 2408f3a40f6dd934770b15e780043370 127 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 9.2E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS14750 2408f3a40f6dd934770b15e780043370 127 SMART SM00345 16 75 7.1E-14 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 SUPERFAMILY SSF54373 255 316 2.09E-10 T 11-11-2016 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 SUPERFAMILY SSF54373 205 220 2.09E-10 T 11-11-2016 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 Gene3D G3DSA:3.50.50.60 316 373 1.1E-51 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 Gene3D G3DSA:3.50.50.60 1 68 1.1E-51 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 Gene3D G3DSA:3.50.50.60 126 204 1.1E-51 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 Gene3D G3DSA:3.30.9.10 74 125 1.4E-16 T 11-11-2016 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 Gene3D G3DSA:3.30.9.10 205 315 1.4E-16 T 11-11-2016 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 Pfam PF01266 FAD dependent oxidoreductase 1 355 2.8E-57 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 SUPERFAMILY SSF51905 1 205 5.5E-45 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS20280 e6ce352f6d7f4f69b4da2dc2c49771e0 374 SUPERFAMILY SSF51905 316 373 5.5E-45 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS20425 6ba450dad95fe7de31e9038c4dc0f044 115 Pfam PF10925 Protein of unknown function (DUF2680) 34 78 9.5E-8 T 11-11-2016 IPR024485 Protein of unknown function DUF2680 Gferi_RS20425 6ba450dad95fe7de31e9038c4dc0f044 115 ProDom PD673109 PRECURSOR SIGNAL YCKD ORF4 DOMAIN 3 76 3.0E-4 T 11-11-2016 IPR024485 Protein of unknown function DUF2680 Gferi_RS03680 43413b5fefb4f736b4223909b323ac8a 101 Pfam PF12960 Protein of unknown function (DUF3849) 1 54 5.3E-15 T 11-11-2016 IPR024383 Domain of unknown function DUF3849 Gferi_RS01655 ca14c7644942ab50ca5fb7afaa693e7c 118 Pfam PF03780 Asp23 family, cell envelope-related function 9 115 2.2E-35 T 11-11-2016 IPR005531 Alkaline shock protein Asp23 Gferi_RS24960 1268a76e4ffdd592b157aa2b5ee40f04 296 Gene3D G3DSA:3.60.21.30 3 218 2.4E-18 T 11-11-2016 Gferi_RS24960 1268a76e4ffdd592b157aa2b5ee40f04 296 SMART SM00854 1 223 3.1E-80 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS24960 1268a76e4ffdd592b157aa2b5ee40f04 296 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 4 222 4.7E-71 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS24960 1268a76e4ffdd592b157aa2b5ee40f04 296 SUPERFAMILY SSF56300 3 242 3.88E-42 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS19870 e673a9eb4cc1f71969337970eb1926e4 371 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 203 368 1.6E-27 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS19870 e673a9eb4cc1f71969337970eb1926e4 371 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 3 370 1.7E-78 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS23430 97ad16bea622dc7069c7daea39ef8523 172 SMART SM00283 5 172 0.0061 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS23430 97ad16bea622dc7069c7daea39ef8523 172 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 55 143 2.4E-24 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 Gferi_RS23430 97ad16bea622dc7069c7daea39ef8523 172 SUPERFAMILY SSF58104 2 142 8.37E-30 T 11-11-2016 Gferi_RS23430 97ad16bea622dc7069c7daea39ef8523 172 Gene3D G3DSA:1.10.287.950 56 142 1.8E-22 T 11-11-2016 Gferi_RS19760 2515f81f9a5225d589121c86dcb0ee92 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 322 3.3E-45 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS11100 23dd121ae0c8b75b86c565e905a143de 149 PIRSF PIRSF005384 1 147 2.4E-60 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS11100 23dd121ae0c8b75b86c565e905a143de 149 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 146 6.2E-59 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS11100 23dd121ae0c8b75b86c565e905a143de 149 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 144 5.5E-57 T 11-11-2016 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 Gferi_RS11100 23dd121ae0c8b75b86c565e905a143de 149 Gene3D G3DSA:3.40.1400.10 1 147 1.6E-66 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS11100 23dd121ae0c8b75b86c565e905a143de 149 SUPERFAMILY SSF89623 1 144 2.35E-60 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS11100 23dd121ae0c8b75b86c565e905a143de 149 Pfam PF02502 Ribose/Galactose Isomerase 3 140 3.2E-59 T 11-11-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Gferi_RS24965 5cdac1e035baa1aaaf45269ff5e02cc4 218 SUPERFAMILY SSF53335 21 147 9.97E-32 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS24965 5cdac1e035baa1aaaf45269ff5e02cc4 218 Pfam PF13649 Methyltransferase domain 40 128 1.9E-19 T 11-11-2016 Gferi_RS24965 5cdac1e035baa1aaaf45269ff5e02cc4 218 Gene3D G3DSA:3.40.50.150 38 193 2.9E-30 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 Pfam PF00905 Penicillin binding protein transpeptidase domain 856 898 3.4E-6 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 Pfam PF00905 Penicillin binding protein transpeptidase domain 412 789 2.7E-49 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 Pfam PF03717 Penicillin-binding Protein dimerisation domain 52 353 1.7E-52 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 Gene3D G3DSA:3.40.710.10 675 787 1.3E-103 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 Gene3D G3DSA:3.40.710.10 367 590 1.3E-103 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 Gene3D G3DSA:3.40.710.10 850 905 1.3E-103 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 Gene3D G3DSA:3.90.1310.10 246 366 7.5E-37 T 11-11-2016 Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 SUPERFAMILY SSF56601 368 382 2.59E-72 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 SUPERFAMILY SSF56601 676 792 2.59E-72 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 SUPERFAMILY SSF56601 410 593 2.59E-72 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 SUPERFAMILY SSF56601 859 905 2.59E-72 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 SUPERFAMILY SSF56519 46 109 2.22E-44 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Gferi_RS26290 8efafd3312f70a5b691f8810ffbff4cd 919 SUPERFAMILY SSF56519 238 367 2.22E-44 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Gferi_RS18490 00a00a79cf37cb80e61a4fe168b280f5 225 Gene3D G3DSA:3.30.240.20 165 224 8.9E-20 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS18490 00a00a79cf37cb80e61a4fe168b280f5 225 Pfam PF04239 Protein of unknown function (DUF421) 86 201 6.1E-34 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS18490 00a00a79cf37cb80e61a4fe168b280f5 225 Pfam PF04239 Protein of unknown function (DUF421) 164 217 4.0E-7 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS18490 00a00a79cf37cb80e61a4fe168b280f5 225 Gene3D G3DSA:3.30.240.20 77 150 1.5E-26 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS05510 2045c0f9d182c6f87bf94dcb2031121f 517 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 36 498 5.8E-177 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS05510 2045c0f9d182c6f87bf94dcb2031121f 517 PIRSF PIRSF005690 21 513 4.1E-175 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS10795 c9cc8215f62d3556234f5344a216c70c 136 TIGRFAM TIGR03826 YvyF: flagellar operon protein TIGR03826 3 134 7.6E-39 T 11-11-2016 IPR022258 Flagellar operon protein YvyF Gferi_RS24815 6830187678b294579a9a800d3e0a7058 322 SUPERFAMILY SSF161098 96 307 9.37E-17 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24815 6830187678b294579a9a800d3e0a7058 322 Gene3D G3DSA:1.10.3720.10 97 316 7.0E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24815 6830187678b294579a9a800d3e0a7058 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 319 9.9E-43 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05545 f5fd971f10a695ad5264f73ed3d972cd 274 Pfam PF01618 MotA/TolQ/ExbB proton channel family 110 223 7.5E-21 T 11-11-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 Pfam PF00696 Amino acid kinase family 5 294 5.8E-27 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 SUPERFAMILY SSF53633 5 312 2.36E-79 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 Gene3D G3DSA:3.40.1160.10 3 313 1.7E-103 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 PIRSF PIRSF000723 2 314 4.6E-125 T 11-11-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 TIGRFAM TIGR00746 arcC: carbamate kinase 5 313 1.2E-118 T 11-11-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 PRINTS PR01469 Bacterial carbamate kinase signature 213 228 7.6E-64 T 11-11-2016 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 PRINTS PR01469 Bacterial carbamate kinase signature 159 178 7.6E-64 T 11-11-2016 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 PRINTS PR01469 Bacterial carbamate kinase signature 268 283 7.6E-64 T 11-11-2016 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 PRINTS PR01469 Bacterial carbamate kinase signature 182 200 7.6E-64 T 11-11-2016 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 PRINTS PR01469 Bacterial carbamate kinase signature 45 64 7.6E-64 T 11-11-2016 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 PRINTS PR01469 Bacterial carbamate kinase signature 75 93 7.6E-64 T 11-11-2016 Gferi_RS11655 df337b0bb6f4abcbc6768db48b5249a0 314 PRINTS PR01469 Bacterial carbamate kinase signature 110 129 7.6E-64 T 11-11-2016 Gferi_RS12950 69fab32edbb40ba33943287cb3554423 915 Pfam PF03699 Uncharacterised protein family (UPF0182) 11 781 1.8E-273 T 11-11-2016 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 Gferi_RS12950 69fab32edbb40ba33943287cb3554423 915 Hamap MF_01600 UPF0182 protein . 2 857 18.329 T 11-11-2016 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 Gferi_RS11565 719fcd9bb03885ac1ac819598b17aff2 234 Pfam PF07486 Cell Wall Hydrolase 135 232 1.5E-28 T 11-11-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 Gferi_RS11565 719fcd9bb03885ac1ac819598b17aff2 234 SUPERFAMILY SSF47090 33 100 5.23E-22 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS11565 719fcd9bb03885ac1ac819598b17aff2 234 Gene3D G3DSA:1.10.101.10 32 97 6.0E-24 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS11565 719fcd9bb03885ac1ac819598b17aff2 234 Pfam PF01471 Putative peptidoglycan binding domain 41 96 8.7E-20 T 11-11-2016 IPR002477 Peptidoglycan binding-like Gferi_RS11565 719fcd9bb03885ac1ac819598b17aff2 234 TIGRFAM TIGR02869 spore_SleB: spore cortex-lytic enzyme 31 233 4.6E-88 T 11-11-2016 IPR014224 Spore cortex-lytic enzyme SleB GO:0003824|GO:0009847 Gferi_RS24225 09b0fede148de4de1101b1f0377ba553 361 Gene3D G3DSA:3.90.1150.10 258 359 6.7E-31 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS24225 09b0fede148de4de1101b1f0377ba553 361 SUPERFAMILY SSF53383 5 357 1.36E-79 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS24225 09b0fede148de4de1101b1f0377ba553 361 Gene3D G3DSA:3.40.640.10 38 257 5.1E-72 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS24225 09b0fede148de4de1101b1f0377ba553 361 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 7 355 8.5E-101 T 11-11-2016 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 Gferi_RS24225 09b0fede148de4de1101b1f0377ba553 361 Pfam PF00155 Aminotransferase class I and II 24 354 1.4E-46 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Gferi_RS13365 b4037542b0d1870ff78e6893873f8201 292 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 3 290 3.0E-60 T 11-11-2016 IPR005218 Diacylglycerol/lipid kinase Gferi_RS13365 b4037542b0d1870ff78e6893873f8201 292 Pfam PF00781 Diacylglycerol kinase catalytic domain 3 124 1.1E-32 T 11-11-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Gferi_RS13365 b4037542b0d1870ff78e6893873f8201 292 SUPERFAMILY SSF111331 1 291 6.54E-87 T 11-11-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain Gferi_RS13365 b4037542b0d1870ff78e6893873f8201 292 SMART SM00046 2 128 2.6E-12 T 11-11-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 Gferi_RS01580 38d3ea910054f18c2806dbc6fff2ae8e 332 Gene3D G3DSA:3.40.47.10 5 165 3.4E-67 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS01580 38d3ea910054f18c2806dbc6fff2ae8e 332 Gene3D G3DSA:3.40.47.10 166 330 2.1E-56 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS01580 38d3ea910054f18c2806dbc6fff2ae8e 332 SUPERFAMILY SSF53901 6 330 1.54E-72 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS01580 38d3ea910054f18c2806dbc6fff2ae8e 332 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 243 330 2.0E-37 T 11-11-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS01580 38d3ea910054f18c2806dbc6fff2ae8e 332 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 111 189 3.0E-32 T 11-11-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS01580 38d3ea910054f18c2806dbc6fff2ae8e 332 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 8 330 3.8E-130 T 11-11-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS01580 38d3ea910054f18c2806dbc6fff2ae8e 332 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 6 330 71.588 T 11-11-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS11695 a367c48acb204484ee91c7d517718940 88 PIRSF PIRSF037257 1 87 3.7E-32 T 11-11-2016 IPR009366 Protein Veg GO:0042710 Gferi_RS11695 a367c48acb204484ee91c7d517718940 88 Gene3D G3DSA:2.30.30.100 2 79 5.4E-31 T 11-11-2016 Gferi_RS11695 a367c48acb204484ee91c7d517718940 88 Pfam PF06257 Biofilm formation stimulator VEG 5 76 1.3E-30 T 11-11-2016 IPR009366 Protein Veg GO:0042710 Gferi_RS00210 8bf2de9d362f40beea711453f155e49e 295 Pfam PF11382 Copper transport outer membrane protein, MctB 3 288 3.9E-38 T 11-11-2016 IPR021522 Copper transporter MctB GO:0006810 Gferi_RS17890 c1219d5745b1b6b20d7317ac266fa39d 107 Gene3D G3DSA:2.60.120.10 2 105 2.7E-29 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS17890 c1219d5745b1b6b20d7317ac266fa39d 107 PIRSF PIRSF029883 1 107 3.8E-34 T 11-11-2016 IPR025499 Pectin degradation protein KdgF Gferi_RS17890 c1219d5745b1b6b20d7317ac266fa39d 107 Pfam PF07883 Cupin domain 33 92 5.5E-14 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS17890 c1219d5745b1b6b20d7317ac266fa39d 107 SUPERFAMILY SSF51182 5 103 2.16E-24 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS07750 1ada1af5746f6e68750c6773bd3252f9 371 Gene3D G3DSA:2.120.10.30 224 356 1.7E-19 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS07750 1ada1af5746f6e68750c6773bd3252f9 371 Gene3D G3DSA:2.120.10.30 100 183 1.7E-19 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS07750 1ada1af5746f6e68750c6773bd3252f9 371 SUPERFAMILY SSF69304 100 343 6.28E-19 T 11-11-2016 Gferi_RS08245 1becc7fde9bf088c79415d430354e8da 132 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 13 44 3.9E-8 T 11-11-2016 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal Gferi_RS08245 1becc7fde9bf088c79415d430354e8da 132 SUPERFAMILY SSF50249 3 100 2.06E-18 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS20485 868b52d74ac19d4fe2e936b52ad1cd27 91 Gene3D G3DSA:1.10.1220.10 5 45 4.6E-8 T 11-11-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Gferi_RS20485 868b52d74ac19d4fe2e936b52ad1cd27 91 Pfam PF01402 Ribbon-helix-helix protein, copG family 6 43 2.4E-6 T 11-11-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Gferi_RS20485 868b52d74ac19d4fe2e936b52ad1cd27 91 SUPERFAMILY SSF47598 4 47 3.51E-9 T 11-11-2016 IPR010985 Ribbon-helix-helix GO:0006355 Gferi_RS26115 cea107870e872a8ed6cc1c2eea6241e3 469 Pfam PF03734 L,D-transpeptidase catalytic domain 33 152 1.7E-22 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS26115 cea107870e872a8ed6cc1c2eea6241e3 469 Gene3D G3DSA:2.40.440.10 29 153 2.4E-34 T 11-11-2016 Gferi_RS26115 cea107870e872a8ed6cc1c2eea6241e3 469 SUPERFAMILY SSF141523 32 152 7.19E-31 T 11-11-2016 Gferi_RS20040 0560064894dcf384ec1601ba714a7eb1 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 307 7.5E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20040 0560064894dcf384ec1601ba714a7eb1 309 SUPERFAMILY SSF161098 93 307 2.4E-14 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20040 0560064894dcf384ec1601ba714a7eb1 309 Gene3D G3DSA:1.10.3720.10 92 303 5.3E-16 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS12665 57a4155a8b5bb3137741ddefc27f43dd 80 Pfam PF11823 Protein of unknown function (DUF3343) 2 54 5.7E-13 T 11-11-2016 IPR021778 Protein of unknown function DUF3343 Gferi_RS15260 3cfd255a9cd35f805972d33d9bfdf0cf 349 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 13 348 33.43 T 11-11-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS15260 3cfd255a9cd35f805972d33d9bfdf0cf 349 Gene3D G3DSA:3.40.50.10210 73 329 6.4E-103 T 11-11-2016 Gferi_RS15260 3cfd255a9cd35f805972d33d9bfdf0cf 349 SUPERFAMILY SSF52733 5 346 3.66E-110 T 11-11-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS15260 3cfd255a9cd35f805972d33d9bfdf0cf 349 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15 346 1.3E-126 T 11-11-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS15260 3cfd255a9cd35f805972d33d9bfdf0cf 349 Gene3D G3DSA:1.10.1610.10 1 72 3.7E-32 T 11-11-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS15260 3cfd255a9cd35f805972d33d9bfdf0cf 349 Pfam PF02277 Phosphoribosyltransferase 11 346 4.3E-127 T 11-11-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 SUPERFAMILY SSF53613 1 294 4.68E-68 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 Hamap MF_01987 Ribokinase [rbsK]. 1 293 20.252 T 11-11-2016 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15 Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 PRINTS PR00990 Ribokinase signature 209 220 4.8E-22 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 PRINTS PR00990 Ribokinase signature 5 26 4.8E-22 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 PRINTS PR00990 Ribokinase signature 102 115 4.8E-22 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 PRINTS PR00990 Ribokinase signature 169 184 4.8E-22 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 PRINTS PR00990 Ribokinase signature 32 51 4.8E-22 T 11-11-2016 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 Gene3D G3DSA:3.40.1190.20 1 294 5.3E-72 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS08775 4780e4ae6760e444f3d8d25fdbfa8931 294 Pfam PF00294 pfkB family carbohydrate kinase 2 285 1.9E-48 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS21595 2af7f2cb57260dc8cb0835cfb6d133e9 342 Pfam PF06889 Protein of unknown function (DUF1266) 76 239 1.1E-19 T 11-11-2016 IPR009677 Protein of unknown function DUF1266 Gferi_RS21595 2af7f2cb57260dc8cb0835cfb6d133e9 342 Pfam PF09951 Protein of unknown function (DUF2185) 257 337 6.2E-22 T 11-11-2016 IPR018689 Domain of unknown function DUF2185 Gferi_RS23485 650d1865408c456f4bc608a5faeb1335 71 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 7 67 6.6E-17 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS23485 650d1865408c456f4bc608a5faeb1335 71 SUPERFAMILY SSF47413 6 68 1.19E-7 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS23485 650d1865408c456f4bc608a5faeb1335 71 Gene3D G3DSA:1.10.260.40 6 68 3.1E-9 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS06975 68549844d79d488d0a4eca136420fc61 190 Gene3D G3DSA:2.130.10.10 1 43 1.4E-8 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Gferi_RS06975 68549844d79d488d0a4eca136420fc61 190 Gene3D G3DSA:2.130.10.10 64 190 1.2E-23 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Gferi_RS06975 68549844d79d488d0a4eca136420fc61 190 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 64 105 1.2E-8 T 11-11-2016 IPR011964 YVTN beta-propeller repeat Gferi_RS06975 68549844d79d488d0a4eca136420fc61 190 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 108 147 9.9E-10 T 11-11-2016 IPR011964 YVTN beta-propeller repeat Gferi_RS06975 68549844d79d488d0a4eca136420fc61 190 SUPERFAMILY SSF50974 2 187 5.23E-31 T 11-11-2016 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 Gferi_RS05490 a62d5e7902c03d161605cfcc75d0d2ad 260 Pfam PF04748 Divergent polysaccharide deacetylase 35 252 1.5E-75 T 11-11-2016 IPR006837 Divergent polysaccharide deacetylase Gferi_RS05490 a62d5e7902c03d161605cfcc75d0d2ad 260 Gene3D G3DSA:3.20.20.370 23 254 8.3E-82 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS05490 a62d5e7902c03d161605cfcc75d0d2ad 260 SUPERFAMILY SSF88713 31 252 1.33E-66 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS09605 a48fd81c3094a9066d346263f10c358a 378 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 6 261 7.9E-54 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS09605 a48fd81c3094a9066d346263f10c358a 378 Gene3D G3DSA:3.60.21.30 6 135 1.4E-14 T 11-11-2016 Gferi_RS09605 a48fd81c3094a9066d346263f10c358a 378 Gene3D G3DSA:3.60.21.30 173 250 1.4E-14 T 11-11-2016 Gferi_RS09605 a48fd81c3094a9066d346263f10c358a 378 SUPERFAMILY SSF56300 6 135 1.1E-34 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS09605 a48fd81c3094a9066d346263f10c358a 378 SUPERFAMILY SSF56300 173 263 1.1E-34 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS09605 a48fd81c3094a9066d346263f10c358a 378 SMART SM00854 5 263 2.8E-55 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS27070 248ea270c1616c4d09efa94a84722df8 343 Pfam PF01966 HD domain 127 249 3.8E-14 T 11-11-2016 IPR006674 HD domain Gferi_RS27070 248ea270c1616c4d09efa94a84722df8 343 Gene3D G3DSA:1.10.3210.10 114 278 8.4E-25 T 11-11-2016 IPR006674 HD domain Gferi_RS27070 248ea270c1616c4d09efa94a84722df8 343 SUPERFAMILY SSF109604 112 287 9.22E-33 T 11-11-2016 Gferi_RS27070 248ea270c1616c4d09efa94a84722df8 343 SMART SM00471 123 259 3.7E-8 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS21455 ce260e12dd0c484982a000fa3d4995df 459 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 211 218 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 Gferi_RS21455 ce260e12dd0c484982a000fa3d4995df 459 Gene3D G3DSA:3.40.605.10 7 226 4.7E-56 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS21455 ce260e12dd0c484982a000fa3d4995df 459 SUPERFAMILY SSF53720 10 447 2.49E-117 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS21455 ce260e12dd0c484982a000fa3d4995df 459 Gene3D G3DSA:3.40.309.10 227 410 3.2E-59 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS21455 ce260e12dd0c484982a000fa3d4995df 459 PIRSF PIRSF036492 1 459 2.1E-180 T 11-11-2016 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 Gferi_RS21455 ce260e12dd0c484982a000fa3d4995df 459 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 239 250 - T 11-11-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 Gferi_RS21455 ce260e12dd0c484982a000fa3d4995df 459 Pfam PF00171 Aldehyde dehydrogenase family 21 430 3.3E-85 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS05900 705d8e9b785c2bc7fb9c8390de62842e 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS05900 705d8e9b785c2bc7fb9c8390de62842e 234 Gene3D G3DSA:3.40.50.300 1 230 7.5E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05900 705d8e9b785c2bc7fb9c8390de62842e 234 SUPERFAMILY SSF52540 3 232 1.33E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05900 705d8e9b785c2bc7fb9c8390de62842e 234 Pfam PF00005 ABC transporter 17 162 3.6E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS05900 705d8e9b785c2bc7fb9c8390de62842e 234 SMART SM00382 26 213 8.2E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS05900 705d8e9b785c2bc7fb9c8390de62842e 234 PIRSF PIRSF039137 1 234 1.7E-111 T 11-11-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Gferi_RS10435 890d0fc3ad9e9b58116f8715af46caf1 205 SUPERFAMILY SSF101262 1 203 2.22E-63 T 11-11-2016 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Gferi_RS10435 890d0fc3ad9e9b58116f8715af46caf1 205 Pfam PF04961 Formiminotransferase-cyclodeaminase 7 186 7.1E-67 T 11-11-2016 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Gferi_RS03055 2d03d3b1110cdb2c68bc6c285a8a3060 137 Pfam PF13782 Stage V sporulation protein AB 25 133 8.8E-31 T 11-11-2016 IPR020144 Stage V sporulation protein AB Gferi_RS03055 2d03d3b1110cdb2c68bc6c285a8a3060 137 ProDom PD086170 SPORULATION AB V STAGE MEMBRANE SPOVAB TRANSMEMBRANE 9 133 4.0E-25 T 11-11-2016 IPR020144 Stage V sporulation protein AB Gferi_RS03720 5391391bec1cb6150cc2142f7d91d7c1 160 Pfam PF14208 Domain of unknown function (DUF4320) 38 157 1.1E-34 T 11-11-2016 IPR025469 Protein of unknown function DUF4320 Gferi_RS00955 c6c1dd52ba921d0f4455b07f0b19740a 467 Pfam PF02120 Flagellar hook-length control protein FliK 345 417 9.2E-19 T 11-11-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal Gferi_RS25470 66c5755d721cc3d424bd9ad5a944d8aa 235 Pfam PF12730 ABC-2 family transporter protein 6 177 9.7E-14 T 11-11-2016 IPR032688 ABC-2 family transporter protein GO:0006810 Gferi_RS08800 7725b3164ea544ef74277b215f7db6f5 295 SUPERFAMILY SSF161098 51 279 5.36E-42 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08800 7725b3164ea544ef74277b215f7db6f5 295 Gene3D G3DSA:1.10.3720.10 57 287 9.6E-38 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08360 50c33612069890206120312a305f000f 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 315 1.2E-45 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS03430 8fe8e38d5b66af4506f463406c251081 268 Gene3D G3DSA:3.30.450.40 88 264 5.3E-51 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS03430 8fe8e38d5b66af4506f463406c251081 268 SMART SM00346 14 105 3.9E-12 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS03430 8fe8e38d5b66af4506f463406c251081 268 Pfam PF09339 IclR helix-turn-helix domain 16 66 1.0E-7 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS03430 8fe8e38d5b66af4506f463406c251081 268 SUPERFAMILY SSF55781 80 261 1.44E-45 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS03430 8fe8e38d5b66af4506f463406c251081 268 Pfam PF01614 Bacterial transcriptional regulator 134 257 2.3E-34 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS03430 8fe8e38d5b66af4506f463406c251081 268 Gene3D G3DSA:1.10.10.10 12 87 3.2E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03430 8fe8e38d5b66af4506f463406c251081 268 SUPERFAMILY SSF46785 14 87 6.07E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS15900 4c82650f6ea7b6782c40e388b85e69fa 210 PIRSF PIRSF010130 1 210 2.9E-75 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS15900 4c82650f6ea7b6782c40e388b85e69fa 210 Pfam PF06130 Phosphate propanoyltransferase 134 197 4.8E-17 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS15900 4c82650f6ea7b6782c40e388b85e69fa 210 Pfam PF06130 Phosphate propanoyltransferase 24 103 2.4E-23 T 11-11-2016 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00561+2.3.1.22|KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013|MetaCyc: PWY-7420 Gferi_RS24020 b10473dc866b77ce9b0b5ee32e0a97dc 309 Gene3D G3DSA:3.20.20.70 1 308 4.8E-117 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS24020 b10473dc866b77ce9b0b5ee32e0a97dc 309 PIRSF PIRSF001359 1 309 3.4E-108 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS24020 b10473dc866b77ce9b0b5ee32e0a97dc 309 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 2 307 8.2E-97 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS24020 b10473dc866b77ce9b0b5ee32e0a97dc 309 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 3 308 1.3E-115 T 11-11-2016 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 Gferi_RS24020 b10473dc866b77ce9b0b5ee32e0a97dc 309 SUPERFAMILY SSF51569 3 308 3.81E-109 T 11-11-2016 Gferi_RS24020 b10473dc866b77ce9b0b5ee32e0a97dc 309 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 308 1.2E-105 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Gferi_RS14985 59118fdf1e278333ad7891d325e2d9f6 210 Pfam PF13847 Methyltransferase domain 42 147 1.2E-17 T 11-11-2016 IPR025714 Methyltransferase domain Gferi_RS14985 59118fdf1e278333ad7891d325e2d9f6 210 Gene3D G3DSA:3.40.50.150 2 193 3.1E-28 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS14985 59118fdf1e278333ad7891d325e2d9f6 210 SUPERFAMILY SSF53335 5 183 1.81E-31 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS12560 814dbb0dd87419a3ba2362ea96f61ca0 409 Gene3D G3DSA:1.20.1250.20 6 197 7.4E-19 T 11-11-2016 Gferi_RS12560 814dbb0dd87419a3ba2362ea96f61ca0 409 Gene3D G3DSA:1.20.1250.20 219 391 4.4E-11 T 11-11-2016 Gferi_RS12560 814dbb0dd87419a3ba2362ea96f61ca0 409 Pfam PF07690 Major Facilitator Superfamily 13 359 5.0E-29 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS12560 814dbb0dd87419a3ba2362ea96f61ca0 409 SUPERFAMILY SSF103473 1 391 1.03E-45 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS25930 f27636805913d4c48c60f1a5ddd9f797 154 Pfam PF01047 MarR family 37 95 1.3E-11 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS25930 f27636805913d4c48c60f1a5ddd9f797 154 SMART SM00347 30 130 6.0E-19 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS25930 f27636805913d4c48c60f1a5ddd9f797 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 1.5E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS25930 f27636805913d4c48c60f1a5ddd9f797 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 54 70 1.5E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS25930 f27636805913d4c48c60f1a5ddd9f797 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 120 140 1.5E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS25930 f27636805913d4c48c60f1a5ddd9f797 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 1.5E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS25930 f27636805913d4c48c60f1a5ddd9f797 154 Gene3D G3DSA:1.10.10.10 12 142 1.7E-36 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25930 f27636805913d4c48c60f1a5ddd9f797 154 SUPERFAMILY SSF46785 10 144 1.96E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19930 4dd3352481576cdb953d400e01081bff 220 Pfam PF02310 B12 binding domain 91 193 5.4E-24 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19930 4dd3352481576cdb953d400e01081bff 220 SUPERFAMILY SSF52242 81 210 1.7E-40 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19930 4dd3352481576cdb953d400e01081bff 220 Pfam PF02607 B12 binding domain 6 77 2.7E-15 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19930 4dd3352481576cdb953d400e01081bff 220 Gene3D G3DSA:1.10.1240.10 4 76 6.4E-18 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19930 4dd3352481576cdb953d400e01081bff 220 Gene3D G3DSA:3.40.50.280 77 211 6.3E-46 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Gferi_RS19930 4dd3352481576cdb953d400e01081bff 220 SMART SM01018 2 85 3.0E-17 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS19930 4dd3352481576cdb953d400e01081bff 220 SUPERFAMILY SSF47644 4 81 1.96E-17 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS13220 d6120ecb9c5de12ad5cf270389b175a2 105 Gene3D G3DSA:3.30.750.24 8 104 1.5E-27 T 11-11-2016 IPR002645 STAS domain Gferi_RS13220 d6120ecb9c5de12ad5cf270389b175a2 105 Pfam PF01740 STAS domain 13 101 6.7E-15 T 11-11-2016 IPR002645 STAS domain Gferi_RS13220 d6120ecb9c5de12ad5cf270389b175a2 105 SUPERFAMILY SSF52091 7 103 7.65E-23 T 11-11-2016 IPR002645 STAS domain Gferi_RS13220 d6120ecb9c5de12ad5cf270389b175a2 105 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 6 103 8.8E-25 T 11-11-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 Gferi_RS26345 3645119baed2ede6f3e35b543af9e358 235 TIGRFAM TIGR03936 sam_1_link_chp: radical SAM-linked protein 3 223 6.3E-68 T 11-11-2016 IPR018768 Domain of unknown function DUF2344 Gferi_RS26345 3645119baed2ede6f3e35b543af9e358 235 Pfam PF10105 Uncharacterized protein conserved in bacteria (DUF2344) 3 195 4.2E-61 T 11-11-2016 IPR018768 Domain of unknown function DUF2344 Gferi_RS19690 be81b7aa70f51fdbde0e65af9de200ae 64 SUPERFAMILY SSF89360 3 49 1.96E-5 T 11-11-2016 IPR000361 FeS cluster biogenesis Gferi_RS19690 be81b7aa70f51fdbde0e65af9de200ae 64 Gene3D G3DSA:2.60.300.12 4 49 1.5E-4 T 11-11-2016 IPR000361 FeS cluster biogenesis Gferi_RS27005 0c116e7f2ec341bed1769d07927962e9 340 Gene3D G3DSA:3.90.550.10 3 206 1.0E-38 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS27005 0c116e7f2ec341bed1769d07927962e9 340 SUPERFAMILY SSF53448 5 231 2.97E-34 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS27005 0c116e7f2ec341bed1769d07927962e9 340 Pfam PF00535 Glycosyl transferase family 2 6 167 5.4E-26 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Gferi_RS08140 546cc68932c0ac9a3e35955e0127b217 91 Pfam PF02583 Metal-sensitive transcriptional repressor 9 85 1.3E-25 T 11-11-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Gferi_RS08680 65003eede3f6c90c1ebd2ce83f221a26 323 Gene3D G3DSA:3.20.20.70 2 205 5.0E-62 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS08680 65003eede3f6c90c1ebd2ce83f221a26 323 SUPERFAMILY SSF54593 212 319 2.08E-5 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS08680 65003eede3f6c90c1ebd2ce83f221a26 323 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 6 205 4.0E-61 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Gferi_RS08680 65003eede3f6c90c1ebd2ce83f221a26 323 Gene3D G3DSA:3.10.180.10 265 317 2.2E-5 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS08680 65003eede3f6c90c1ebd2ce83f221a26 323 Pfam PF01081 KDPG and KHG aldolase 7 197 1.2E-53 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Gferi_RS08680 65003eede3f6c90c1ebd2ce83f221a26 323 SUPERFAMILY SSF51569 3 204 1.7E-55 T 11-11-2016 Gferi_RS12540 f253c801b69c24d54cbb90b534199f29 413 Gene3D G3DSA:2.40.50.100 58 88 2.1E-9 T 11-11-2016 Gferi_RS12540 f253c801b69c24d54cbb90b534199f29 413 Gene3D G3DSA:2.40.50.100 215 236 2.1E-9 T 11-11-2016 Gferi_RS12540 f253c801b69c24d54cbb90b534199f29 413 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 300 1.5E-9 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS01600 a0e291e9f73eee2fff711b42ef24742e 168 Pfam PF02620 Uncharacterized ACR, COG1399 55 164 1.5E-28 T 11-11-2016 IPR003772 Protein of unknown function DUF177 Gferi_RS14965 49063ecbb1565e2ea436d784f9969a7a 259 Gene3D G3DSA:3.40.50.1820 22 259 8.2E-32 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14965 49063ecbb1565e2ea436d784f9969a7a 259 SUPERFAMILY SSF53474 20 259 2.4E-30 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold Gferi_RS14965 49063ecbb1565e2ea436d784f9969a7a 259 Pfam PF00326 Prolyl oligopeptidase family 111 241 2.0E-11 T 11-11-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 Gferi_RS08340 21b299450951d6f7350124c6478930c3 417 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 240 406 1.1E-26 T 11-11-2016 IPR031475 Putative nucleotide-binding C-terminal domain Gferi_RS08340 21b299450951d6f7350124c6478930c3 417 SUPERFAMILY SSF142764 2 413 5.75E-77 T 11-11-2016 Gferi_RS08340 21b299450951d6f7350124c6478930c3 417 Pfam PF07005 Putative sugar-binding N-terminal domain 2 218 5.3E-38 T 11-11-2016 IPR010737 Putative sugar-binding, N-terminal domain Gferi_RS09690 a5d24ce49093686b7b2cbf02a27ffe42 499 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 16 436 5.4E-136 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane Gferi_RS24790 51e4e3fa1b8cef9ae1aa4d5ee4b32636 275 Gene3D G3DSA:1.10.3720.10 66 270 1.4E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24790 51e4e3fa1b8cef9ae1aa4d5ee4b32636 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 273 5.8E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS24790 51e4e3fa1b8cef9ae1aa4d5ee4b32636 275 SUPERFAMILY SSF161098 67 254 2.62E-23 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS11545 5545718c99705bb690633426637e2746 252 Pfam PF05746 DALR anticodon binding domain 133 252 4.4E-12 T 11-11-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Gferi_RS11545 5545718c99705bb690633426637e2746 252 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 5 83 4.5E-20 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS11545 5545718c99705bb690633426637e2746 252 SMART SM00836 133 252 3.1E-11 T 11-11-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Gferi_RS11545 5545718c99705bb690633426637e2746 252 Gene3D G3DSA:1.10.730.10 133 252 2.0E-15 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS11545 5545718c99705bb690633426637e2746 252 SMART SM01016 3 83 1.8E-19 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS11545 5545718c99705bb690633426637e2746 252 SUPERFAMILY SSF47323 132 252 1.18E-14 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Gferi_RS11545 5545718c99705bb690633426637e2746 252 Gene3D G3DSA:3.30.1360.70 3 97 2.5E-23 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS11545 5545718c99705bb690633426637e2746 252 SUPERFAMILY SSF55190 5 95 4.45E-19 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Gferi_RS21615 6e701937324d4cd4f8370aeced1f151e 895 Gene3D G3DSA:3.30.565.10 3 165 2.2E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21615 6e701937324d4cd4f8370aeced1f151e 895 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 759 869 6.1E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21615 6e701937324d4cd4f8370aeced1f151e 895 SMART SM00387 755 877 2.1E-7 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21615 6e701937324d4cd4f8370aeced1f151e 895 SUPERFAMILY SSF55874 720 862 1.57E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21615 6e701937324d4cd4f8370aeced1f151e 895 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 20 178 5.5E-18 T 11-11-2016 Gferi_RS21615 6e701937324d4cd4f8370aeced1f151e 895 SUPERFAMILY SSF55874 7 163 1.44E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21615 6e701937324d4cd4f8370aeced1f151e 895 Gene3D G3DSA:3.30.565.10 721 874 1.0E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS04585 fea38b9e414c09a1f68d05d44fa19cbc 262 Pfam PF01012 Electron transfer flavoprotein domain 23 208 6.5E-41 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS04585 fea38b9e414c09a1f68d05d44fa19cbc 262 Gene3D G3DSA:3.40.50.620 1 258 1.3E-69 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS04585 fea38b9e414c09a1f68d05d44fa19cbc 262 SUPERFAMILY SSF52402 1 255 1.88E-61 T 11-11-2016 Gferi_RS04585 fea38b9e414c09a1f68d05d44fa19cbc 262 SMART SM00893 22 213 7.0E-51 T 11-11-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 Gferi_RS04585 fea38b9e414c09a1f68d05d44fa19cbc 262 PIRSF PIRSF000090 1 262 2.5E-69 T 11-11-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105 Gferi_RS21915 f23ba004f312f167614e785f5a65c7fc 181 Gene3D G3DSA:3.40.50.1240 15 138 1.4E-10 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS21915 f23ba004f312f167614e785f5a65c7fc 181 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 16 99 3.2E-7 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 Gferi_RS21915 f23ba004f312f167614e785f5a65c7fc 181 SUPERFAMILY SSF53254 15 169 1.11E-17 T 11-11-2016 IPR029033 Histidine phosphatase superfamily Gferi_RS05810 f2d44c9debe1fecb66fde20caec074c0 249 Hamap MF_01462 Cobalt transport protein CbiM [cbiM]. 28 242 28.175 T 11-11-2016 IPR018024 Cobalamin (vitamin B12) biosynthesis protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 Gferi_RS05810 f2d44c9debe1fecb66fde20caec074c0 249 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 29 233 1.9E-50 T 11-11-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 Gferi_RS05810 f2d44c9debe1fecb66fde20caec074c0 249 TIGRFAM TIGR00123 cbiM: cobalamin biosynthesis protein CbiM 28 234 9.4E-92 T 11-11-2016 IPR018024 Cobalamin (vitamin B12) biosynthesis protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 Gferi_RS20635 f955458b144fb0eaa5f1113f9007e12d 655 SUPERFAMILY SSF81296 4 114 2.03E-12 T 11-11-2016 IPR014756 Immunoglobulin E-set Gferi_RS20635 f955458b144fb0eaa5f1113f9007e12d 655 SUPERFAMILY SSF51445 133 563 6.63E-93 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily Gferi_RS20635 f955458b144fb0eaa5f1113f9007e12d 655 SMART SM00642 145 554 7.0E-75 T 11-11-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Gferi_RS20635 f955458b144fb0eaa5f1113f9007e12d 655 Pfam PF00128 Alpha amylase, catalytic domain 196 528 2.3E-62 T 11-11-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Gferi_RS20635 f955458b144fb0eaa5f1113f9007e12d 655 Gene3D G3DSA:3.20.20.80 136 555 1.1E-102 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 Gferi_RS20635 f955458b144fb0eaa5f1113f9007e12d 655 Gene3D G3DSA:2.60.40.10 7 135 1.1E-15 T 11-11-2016 IPR013783 Immunoglobulin-like fold Gferi_RS20635 f955458b144fb0eaa5f1113f9007e12d 655 Gene3D G3DSA:2.60.40.1180 557 652 8.8E-5 T 11-11-2016 IPR013780 Glycosyl hydrolase, all-beta Gferi_RS21985 72b75e7e8f838f5bb8fa7296060b6969 185 PRINTS PR00702 Acriflavin resistance protein family signature 59 83 4.2E-12 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21985 72b75e7e8f838f5bb8fa7296060b6969 185 PRINTS PR00702 Acriflavin resistance protein family signature 137 160 4.2E-12 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21985 72b75e7e8f838f5bb8fa7296060b6969 185 PRINTS PR00702 Acriflavin resistance protein family signature 31 52 4.2E-12 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21985 72b75e7e8f838f5bb8fa7296060b6969 185 PRINTS PR00702 Acriflavin resistance protein family signature 4 27 4.2E-12 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS21985 72b75e7e8f838f5bb8fa7296060b6969 185 Gene3D G3DSA:1.10.3850.10 2 164 4.2E-50 T 11-11-2016 Gferi_RS21985 72b75e7e8f838f5bb8fa7296060b6969 185 SUPERFAMILY SSF82866 11 165 1.02E-41 T 11-11-2016 Gferi_RS21985 72b75e7e8f838f5bb8fa7296060b6969 185 Pfam PF00873 AcrB/AcrD/AcrF family 6 163 8.8E-56 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 Gferi_RS26560 a922ede4e88079ce296d8bda25f1d234 565 Pfam PF06048 Domain of unknown function (DUF927) 16 293 7.2E-38 T 11-11-2016 IPR009270 Domain of unknown function DUF927 Gferi_RS07035 52b124b4cd4f9a9e9c6e547f01eaed7c 384 SUPERFAMILY SSF53822 34 379 1.07E-95 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS07035 52b124b4cd4f9a9e9c6e547f01eaed7c 384 Pfam PF13458 Periplasmic binding protein 34 366 5.5E-69 T 11-11-2016 IPR028081 Leucine-binding protein domain Gferi_RS07035 52b124b4cd4f9a9e9c6e547f01eaed7c 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 97 107 6.1E-7 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS07035 52b124b4cd4f9a9e9c6e547f01eaed7c 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 6.1E-7 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS07035 52b124b4cd4f9a9e9c6e547f01eaed7c 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 34 50 6.1E-7 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS07035 52b124b4cd4f9a9e9c6e547f01eaed7c 384 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 56 72 6.1E-7 T 11-11-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Gferi_RS07035 52b124b4cd4f9a9e9c6e547f01eaed7c 384 Gene3D G3DSA:3.40.50.2300 33 231 1.5E-60 T 11-11-2016 Gferi_RS21185 6119775d42c7a9d01cb11a1c2c29144a 444 Gene3D G3DSA:1.10.287.130 228 286 5.8E-4 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Gferi_RS21185 6119775d42c7a9d01cb11a1c2c29144a 444 SUPERFAMILY SSF55874 295 432 3.67E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21185 6119775d42c7a9d01cb11a1c2c29144a 444 Gene3D G3DSA:3.30.565.10 297 440 1.1E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS21185 6119775d42c7a9d01cb11a1c2c29144a 444 Pfam PF14501 GHKL domain 332 435 8.5E-22 T 11-11-2016 IPR032834 Sensor histidine kinase NatK, C-terminal domain Gferi_RS02040 15833df541dadf24817d28682fc51b4f 457 SMART SM00854 34 276 1.2E-83 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS02040 15833df541dadf24817d28682fc51b4f 457 SUPERFAMILY SSF56300 34 276 5.22E-39 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS02040 15833df541dadf24817d28682fc51b4f 457 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 34 275 2.1E-74 T 11-11-2016 IPR019079 Capsule synthesis protein, CapA Gferi_RS02040 15833df541dadf24817d28682fc51b4f 457 Gene3D G3DSA:3.60.21.30 34 271 5.0E-18 T 11-11-2016 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 PRINTS PR00691 Adhesin B signature 83 102 7.0E-5 T 11-11-2016 IPR006129 Adhesin B GO:0007155 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 PRINTS PR00691 Adhesin B signature 39 60 7.0E-5 T 11-11-2016 IPR006129 Adhesin B GO:0007155 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 PRINTS PR00691 Adhesin B signature 64 82 7.0E-5 T 11-11-2016 IPR006129 Adhesin B GO:0007155 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 Gene3D G3DSA:3.40.50.1980 264 324 1.0E-60 T 11-11-2016 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 Gene3D G3DSA:3.40.50.1980 34 138 1.0E-60 T 11-11-2016 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 Pfam PF01297 Zinc-uptake complex component A periplasmic 42 441 2.4E-84 T 11-11-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 Gene3D G3DSA:3.40.50.1980 325 443 2.3E-38 T 11-11-2016 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 PRINTS PR00690 Adhesin family signature 39 57 2.6E-5 T 11-11-2016 IPR006128 Adhesion lipoprotein GO:0007155 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 PRINTS PR00690 Adhesin family signature 70 83 2.6E-5 T 11-11-2016 IPR006128 Adhesion lipoprotein GO:0007155 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 PRINTS PR00690 Adhesin family signature 188 209 2.6E-5 T 11-11-2016 IPR006128 Adhesion lipoprotein GO:0007155 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 PRINTS PR00690 Adhesin family signature 83 100 2.6E-5 T 11-11-2016 IPR006128 Adhesion lipoprotein GO:0007155 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 SUPERFAMILY SSF53807 38 136 7.46E-88 T 11-11-2016 Gferi_RS11790 d7cdb2bd2814f774a27a95599c6ef0bb 444 SUPERFAMILY SSF53807 265 443 7.46E-88 T 11-11-2016 Gferi_RS16455 cf303e2bdfba436303e2ca549ecb0363 174 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 5 173 1.6E-63 T 11-11-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Gferi_RS16455 cf303e2bdfba436303e2ca549ecb0363 174 Gene3D G3DSA:3.40.50.300 3 173 2.7E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS16455 cf303e2bdfba436303e2ca549ecb0363 174 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 4 173 3.3E-56 T 11-11-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Gferi_RS16455 cf303e2bdfba436303e2ca549ecb0363 174 PIRSF PIRSF015617 1 174 3.8E-62 T 11-11-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 Gferi_RS16455 cf303e2bdfba436303e2ca549ecb0363 174 SUPERFAMILY SSF52540 4 173 4.05E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21935 ac257b7e7b221b0498f83f8c79a5064b 549 Pfam PF13556 PucR C-terminal helix-turn-helix domain 484 542 1.0E-19 T 11-11-2016 IPR025736 PucR C-terminal helix-turn-helix domain Gferi_RS21935 ac257b7e7b221b0498f83f8c79a5064b 549 Pfam PF07905 Purine catabolism regulatory protein-like family 29 145 4.7E-24 T 11-11-2016 IPR012914 Purine catabolism PurC-like domain Gferi_RS14150 e121500784ef02955b062b9062e7935a 263 SUPERFAMILY SSF160104 9 261 5.36E-42 T 11-11-2016 Gferi_RS14150 e121500784ef02955b062b9062e7935a 263 Pfam PF06314 Acetoacetate decarboxylase (ADC) 7 259 2.0E-50 T 11-11-2016 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 Gferi_RS14150 e121500784ef02955b062b9062e7935a 263 Gene3D G3DSA:2.40.400.10 15 255 4.1E-39 T 11-11-2016 IPR023375 Acetoacetate decarboxylase beta barrel domain KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 Gferi_RS19125 2b5af19047efa8d8f9c65962a355780d 179 Pfam PF06560 Glucose-6-phosphate isomerase (GPI) 46 163 3.7E-16 T 11-11-2016 IPR010551 Glucose-6-phosphate isomerase, prokaryote GO:0004347|GO:0005737|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385 Gferi_RS19125 2b5af19047efa8d8f9c65962a355780d 179 SUPERFAMILY SSF51182 42 174 2.17E-19 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS19125 2b5af19047efa8d8f9c65962a355780d 179 Gene3D G3DSA:2.60.120.10 19 178 2.3E-30 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS16345 e51d93612fddbef3e62825e503415ea1 375 SUPERFAMILY SSF51726 178 374 2.09E-26 T 11-11-2016 Gferi_RS16345 e51d93612fddbef3e62825e503415ea1 375 Gene3D G3DSA:3.20.20.210 41 374 7.1E-32 T 11-11-2016 Gferi_RS16345 e51d93612fddbef3e62825e503415ea1 375 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 187 373 2.1E-20 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 Gferi_RS26720 dd0fc7c211c96cea767ef33614d41dda 142 Pfam PF12821 Threonine/Serine exporter, ThrE 5 132 2.1E-35 T 11-11-2016 IPR024528 Threonine/Serine exporter, ThrE Gferi_RS17825 833172e30fa51dbdfe0bb464b8e4ecad 152 SUPERFAMILY SSF55729 17 145 6.29E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS17825 833172e30fa51dbdfe0bb464b8e4ecad 152 Pfam PF00583 Acetyltransferase (GNAT) family 58 141 1.7E-14 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS17825 833172e30fa51dbdfe0bb464b8e4ecad 152 Gene3D G3DSA:3.40.630.30 4 147 7.9E-22 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS23535 be5fc15ab1a8ca4e6567f7efa27bfdb5 141 Gene3D G3DSA:1.10.10.10 77 131 4.9E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23535 be5fc15ab1a8ca4e6567f7efa27bfdb5 141 Pfam PF07374 Protein of unknown function (DUF1492) 34 130 3.4E-11 T 11-11-2016 IPR010861 Protein of unknown function DUF1492 Gferi_RS23535 be5fc15ab1a8ca4e6567f7efa27bfdb5 141 SUPERFAMILY SSF88659 75 132 2.62E-8 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS11480 2868998154dd79018da719bca4ea02c7 493 Pfam PF00395 S-layer homology domain 425 467 9.3E-10 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11480 2868998154dd79018da719bca4ea02c7 493 Pfam PF00395 S-layer homology domain 292 331 2.2E-4 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11480 2868998154dd79018da719bca4ea02c7 493 Pfam PF00395 S-layer homology domain 361 402 6.4E-12 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS09325 10904dc1cb6616c956a5740c0b61b172 438 SUPERFAMILY SSF55781 25 174 7.85E-9 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS09325 10904dc1cb6616c956a5740c0b61b172 438 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 232 437 8.0E-26 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS09325 10904dc1cb6616c956a5740c0b61b172 438 SMART SM00331 203 436 3.9E-15 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS09325 10904dc1cb6616c956a5740c0b61b172 438 Gene3D G3DSA:3.30.450.40 115 168 4.6E-6 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS13465 23723c0a11e1a1a18d8a0239706467a9 156 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 16 156 1.9E-13 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 Gferi_RS07760 bfc5a8430d8da2d21f7b6e73fb1e4509 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 223 8.2E-25 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07760 bfc5a8430d8da2d21f7b6e73fb1e4509 233 SUPERFAMILY SSF46894 126 223 1.19E-28 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS07760 bfc5a8430d8da2d21f7b6e73fb1e4509 233 Gene3D G3DSA:3.40.50.2300 2 126 8.5E-39 T 11-11-2016 Gferi_RS07760 bfc5a8430d8da2d21f7b6e73fb1e4509 233 SUPERFAMILY SSF52172 2 124 1.85E-39 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS07760 bfc5a8430d8da2d21f7b6e73fb1e4509 233 Gene3D G3DSA:1.10.10.10 127 223 7.7E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS07760 bfc5a8430d8da2d21f7b6e73fb1e4509 233 SMART SM00862 150 224 4.3E-24 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS07760 bfc5a8430d8da2d21f7b6e73fb1e4509 233 Pfam PF00072 Response regulator receiver domain 5 113 1.2E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS07760 bfc5a8430d8da2d21f7b6e73fb1e4509 233 SMART SM00448 3 113 2.2E-40 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS13500 c17d7a510e1ba49ed59c2e2e81287d2d 470 Gene3D G3DSA:3.40.309.10 228 276 1.1E-15 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS13500 c17d7a510e1ba49ed59c2e2e81287d2d 470 Gene3D G3DSA:3.40.309.10 313 401 1.1E-15 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 Gferi_RS13500 c17d7a510e1ba49ed59c2e2e81287d2d 470 Pfam PF00171 Aldehyde dehydrogenase family 9 270 5.6E-17 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS13500 c17d7a510e1ba49ed59c2e2e81287d2d 470 Gene3D G3DSA:3.40.605.10 12 227 3.9E-15 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 Gferi_RS13500 c17d7a510e1ba49ed59c2e2e81287d2d 470 SUPERFAMILY SSF53720 10 449 1.44E-55 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 Gferi_RS07710 2986dd7be1342da250ee7a8986c62c2b 570 Gene3D G3DSA:3.30.2010.10 145 228 3.9E-4 T 11-11-2016 Gferi_RS07710 2986dd7be1342da250ee7a8986c62c2b 570 SUPERFAMILY SSF53187 376 562 2.79E-41 T 11-11-2016 Gferi_RS07710 2986dd7be1342da250ee7a8986c62c2b 570 SMART SM00646 441 558 4.6E-23 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS07710 2986dd7be1342da250ee7a8986c62c2b 570 Pfam PF05569 BlaR1 peptidase M56 1 311 1.0E-61 T 11-11-2016 IPR008756 Peptidase M56 Gferi_RS07710 2986dd7be1342da250ee7a8986c62c2b 570 Gene3D G3DSA:3.40.630.40 376 562 8.9E-47 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS07710 2986dd7be1342da250ee7a8986c62c2b 570 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 378 558 3.1E-44 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS12000 85eefaaa864da7fb7abf28978da21071 273 Pfam PF00149 Calcineurin-like phosphoesterase 45 206 1.1E-13 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS12000 85eefaaa864da7fb7abf28978da21071 273 Gene3D G3DSA:3.60.21.10 45 222 6.9E-29 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS12000 85eefaaa864da7fb7abf28978da21071 273 SUPERFAMILY SSF56300 45 270 3.8E-35 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS25500 09a797931933ce30774f655241fbc634 397 Gene3D G3DSA:3.30.420.40 225 367 2.0E-21 T 11-11-2016 Gferi_RS25500 09a797931933ce30774f655241fbc634 397 Gene3D G3DSA:1.10.10.10 11 78 1.2E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25500 09a797931933ce30774f655241fbc634 397 SUPERFAMILY SSF46785 10 74 6.57E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS25500 09a797931933ce30774f655241fbc634 397 Pfam PF00480 ROK family 85 386 4.3E-22 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS25500 09a797931933ce30774f655241fbc634 397 Gene3D G3DSA:3.30.420.40 82 224 1.2E-30 T 11-11-2016 Gferi_RS25500 09a797931933ce30774f655241fbc634 397 SUPERFAMILY SSF53067 82 392 6.74E-34 T 11-11-2016 Gferi_RS17070 7534347124af59c5c5816c4a1ae07d8d 273 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 21 261 1.5E-5 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Gferi_RS17070 7534347124af59c5c5816c4a1ae07d8d 273 Gene3D G3DSA:3.40.1390.30 6 87 2.8E-4 T 11-11-2016 Gferi_RS17070 7534347124af59c5c5816c4a1ae07d8d 273 SUPERFAMILY SSF102705 22 99 8.24E-10 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Gferi_RS17070 7534347124af59c5c5816c4a1ae07d8d 273 SUPERFAMILY SSF102705 140 267 8.24E-10 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Gferi_RS25735 0c999eb2771b200d83036b4208a2b366 386 Gene3D G3DSA:3.40.50.1970 2 187 2.9E-57 T 11-11-2016 Gferi_RS25735 0c999eb2771b200d83036b4208a2b366 386 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 378 1.6E-121 T 11-11-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Gferi_RS25735 0c999eb2771b200d83036b4208a2b366 386 Gene3D G3DSA:1.20.1090.10 188 386 3.2E-63 T 11-11-2016 Gferi_RS25735 0c999eb2771b200d83036b4208a2b366 386 SUPERFAMILY SSF56796 3 386 1.96E-119 T 11-11-2016 Gferi_RS24470 2fcb0fd900264c58ac1ef921ba6351ca 248 Gene3D G3DSA:3.20.20.70 1 247 2.2E-107 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS24470 2fcb0fd900264c58ac1ef921ba6351ca 248 Pfam PF00121 Triosephosphate isomerase 5 246 5.5E-99 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24470 2fcb0fd900264c58ac1ef921ba6351ca 248 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 1.3E-59 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24470 2fcb0fd900264c58ac1ef921ba6351ca 248 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 39.419 T 11-11-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24470 2fcb0fd900264c58ac1ef921ba6351ca 248 SUPERFAMILY SSF51351 1 247 4.06E-97 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS24470 2fcb0fd900264c58ac1ef921ba6351ca 248 ProSitePatterns PS00171 Triosephosphate isomerase active site. 164 174 - T 11-11-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Gferi_RS21060 f75ee4f5cc12913272b5c468bd2f4303 310 Pfam PF01609 Transposase DDE domain 121 278 4.1E-8 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS17200 3fcf0884316981f9bc624d68040f30c5 117 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 2 112 6.0E-39 T 11-11-2016 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 Gferi_RS17200 3fcf0884316981f9bc624d68040f30c5 117 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 7 112 6.0E-21 T 11-11-2016 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 Gferi_RS17200 3fcf0884316981f9bc624d68040f30c5 117 Gene3D G3DSA:2.40.33.40 1 116 3.0E-41 T 11-11-2016 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 Gferi_RS17200 3fcf0884316981f9bc624d68040f30c5 117 SUPERFAMILY SSF141530 1 116 1.06E-35 T 11-11-2016 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 Gferi_RS16260 b1f91dc4d43d3cfef865c2c5face5524 403 Pfam PF07613 Protein of unknown function (DUF1576) 20 195 5.5E-60 T 11-11-2016 IPR011470 Protein of unknown function DUF1576 Gferi_RS16260 b1f91dc4d43d3cfef865c2c5face5524 403 Pfam PF07613 Protein of unknown function (DUF1576) 234 397 2.5E-54 T 11-11-2016 IPR011470 Protein of unknown function DUF1576 Gferi_RS00990 895ccb11a217d7e474138b4161cf36d0 94 Pfam PF02049 Flagellar hook-basal body complex protein FliE 13 93 1.5E-26 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Gferi_RS00990 895ccb11a217d7e474138b4161cf36d0 94 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 17 93 2.5E-20 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Gferi_RS00990 895ccb11a217d7e474138b4161cf36d0 94 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 79 92 1.3E-11 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Gferi_RS00990 895ccb11a217d7e474138b4161cf36d0 94 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 24 40 1.3E-11 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Gferi_RS00990 895ccb11a217d7e474138b4161cf36d0 94 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 58 74 1.3E-11 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Gferi_RS00990 895ccb11a217d7e474138b4161cf36d0 94 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 1 94 16.403 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 Gferi_RS18010 9a0c39ecaf69b4bba624b3bffa8178d7 267 Pfam PF01969 Protein of unknown function DUF111 6 258 1.1E-88 T 11-11-2016 IPR002822 Uncharacterised protein family UPF0272 Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 SUPERFAMILY SSF52540 398 426 9.32E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 SUPERFAMILY SSF52540 196 310 9.32E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 SUPERFAMILY SSF52540 481 755 9.32E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 Gene3D G3DSA:3.40.50.300 196 304 9.3E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 Gene3D G3DSA:3.40.50.300 507 600 9.3E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 Pfam PF13245 Part of AAA domain 217 276 3.3E-9 T 11-11-2016 Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 Gene3D G3DSA:3.40.50.300 601 764 3.2E-33 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 Pfam PF13538 UvrD-like helicase C-terminal domain 704 750 9.0E-8 T 11-11-2016 IPR027785 UvrD-like helicase C-terminal domain Gferi_RS08900 207bef76d2500648dac8a746f86f5d19 769 Pfam PF00580 UvrD/REP helicase N-terminal domain 398 572 3.0E-8 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 Gferi_RS14475 6bb2282d157b3465b8de5d630e453a0f 559 Pfam PF03888 MucB/RseB N-terminal domain 148 255 4.5E-6 T 11-11-2016 IPR033434 MucB/RseB, N-terminal Gferi_RS14475 6bb2282d157b3465b8de5d630e453a0f 559 SUPERFAMILY SSF89392 109 291 3.18E-8 T 11-11-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX Gferi_RS14475 6bb2282d157b3465b8de5d630e453a0f 559 Gene3D G3DSA:2.50.20.10 109 290 4.9E-8 T 11-11-2016 Gferi_RS06570 e6c3487e9d0b1621ea2fa23a8ccc3558 260 Pfam PF00218 Indole-3-glycerol phosphate synthase 3 255 1.4E-87 T 11-11-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Gferi_RS06570 e6c3487e9d0b1621ea2fa23a8ccc3558 260 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 51 69 - T 11-11-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 Gferi_RS06570 e6c3487e9d0b1621ea2fa23a8ccc3558 260 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 1 257 34.275 T 11-11-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 Gferi_RS06570 e6c3487e9d0b1621ea2fa23a8ccc3558 260 SUPERFAMILY SSF51366 10 256 3.41E-83 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Gferi_RS06570 e6c3487e9d0b1621ea2fa23a8ccc3558 260 Gene3D G3DSA:3.20.20.70 1 257 9.6E-98 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS11585 647098e507803227d2f6a1c3ad211df3 524 PIRSF PIRSF005690 18 516 3.6E-184 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS11585 647098e507803227d2f6a1c3ad211df3 524 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 31 502 7.8E-189 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS08820 c64765eb90df3b02685295b767ac8dbb 333 Pfam PF01618 MotA/TolQ/ExbB proton channel family 58 185 4.2E-6 T 11-11-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 Gferi_RS08820 c64765eb90df3b02685295b767ac8dbb 333 Gene3D G3DSA:1.10.287.950 248 324 1.4E-4 T 11-11-2016 Gferi_RS07550 4a327abe1df4f552a5b2d73cca8052a9 71 Pfam PF03734 L,D-transpeptidase catalytic domain 7 44 8.5E-6 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Gferi_RS07550 4a327abe1df4f552a5b2d73cca8052a9 71 Gene3D G3DSA:2.40.440.10 7 45 1.2E-12 T 11-11-2016 Gferi_RS07550 4a327abe1df4f552a5b2d73cca8052a9 71 SUPERFAMILY SSF141523 7 45 4.32E-12 T 11-11-2016 Gferi_RS03015 a4438ff9f94778eec91f89a24d2a9008 104 Pfam PF13190 PDGLE domain 13 89 2.4E-15 T 11-11-2016 IPR025937 PDGLE domain Gferi_RS03015 a4438ff9f94778eec91f89a24d2a9008 104 ProDom PD486863 PRECURSOR CBIM SIGNAL COBALT MEMBRANE VITAMIN B12 BIOSYNTHESIS COBALAMIN ABC-TYPE 10 49 3.0E-6 T 11-11-2016 Gferi_RS15655 c6bbb5f98f99239e741cdbec882a3993 352 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 70 84 - T 11-11-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Gferi_RS15655 c6bbb5f98f99239e741cdbec882a3993 352 Gene3D G3DSA:3.40.50.720 176 295 1.4E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS15655 c6bbb5f98f99239e741cdbec882a3993 352 Pfam PF00107 Zinc-binding dehydrogenase 184 309 1.1E-29 T 11-11-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Gferi_RS15655 c6bbb5f98f99239e741cdbec882a3993 352 SUPERFAMILY SSF50129 1 182 3.35E-56 T 11-11-2016 IPR011032 GroES-like Gferi_RS15655 c6bbb5f98f99239e741cdbec882a3993 352 Gene3D G3DSA:3.90.180.10 1 175 6.7E-61 T 11-11-2016 IPR011032 GroES-like Gferi_RS15655 c6bbb5f98f99239e741cdbec882a3993 352 SMART SM00829 8 349 2.8E-6 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Gferi_RS15655 c6bbb5f98f99239e741cdbec882a3993 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 143 2.2E-34 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Gferi_RS15655 c6bbb5f98f99239e741cdbec882a3993 352 SUPERFAMILY SSF51735 146 315 1.36E-42 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS05285 49b97abcfbc1966f1a2d7598d9f10ed1 116 Pfam PF04205 FMN-binding domain 40 112 4.2E-16 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS05285 49b97abcfbc1966f1a2d7598d9f10ed1 116 SMART SM00900 40 114 3.0E-17 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS00775 f1c08e9f3e53dce20296a43cd1f2e21c 255 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 198 215 - T 11-11-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 Gferi_RS00775 f1c08e9f3e53dce20296a43cd1f2e21c 255 Pfam PF01255 Putative undecaprenyl diphosphate synthase 32 252 2.0E-83 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Gferi_RS00775 f1c08e9f3e53dce20296a43cd1f2e21c 255 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 25 253 40.822 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Gferi_RS00775 f1c08e9f3e53dce20296a43cd1f2e21c 255 Gene3D G3DSA:3.40.1180.10 18 253 5.6E-100 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Gferi_RS00775 f1c08e9f3e53dce20296a43cd1f2e21c 255 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 25 252 2.2E-88 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Gferi_RS00775 f1c08e9f3e53dce20296a43cd1f2e21c 255 SUPERFAMILY SSF64005 20 247 5.49E-92 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Gferi_RS07355 58ee01982b73d24eb3bdd4fc6108fb86 177 Pfam PF04143 Sulphur transport 5 167 2.4E-37 T 11-11-2016 IPR007272 Sulphur transport domain Gferi_RS13135 f0bde39f6945b8891a4da47ac6f35bf2 55 Pfam PF12655 Domain of unknown function (DUF3787) 4 55 7.9E-25 T 11-11-2016 IPR024209 Protein of unknown function DUF3787 Gferi_RS03420 16edd3281f05fe1672af8efc97d166b7 337 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 30 318 2.0E-72 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS03420 16edd3281f05fe1672af8efc97d166b7 337 SUPERFAMILY SSF53686 16 324 1.7E-87 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS03420 16edd3281f05fe1672af8efc97d166b7 337 Gene3D G3DSA:3.40.50.1100 82 335 5.1E-70 T 11-11-2016 Gferi_RS24570 f10306db86e0cc9c7307b995cd08259e 364 ProSitePatterns PS00194 Thioredoxin family active site. 239 257 - T 11-11-2016 IPR017937 Thioredoxin, conserved site GO:0045454 Gferi_RS24570 f10306db86e0cc9c7307b995cd08259e 364 SUPERFAMILY SSF52833 215 352 1.07E-23 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS24570 f10306db86e0cc9c7307b995cd08259e 364 Pfam PF00578 AhpC/TSA family 215 327 2.6E-10 T 11-11-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Gferi_RS24570 f10306db86e0cc9c7307b995cd08259e 364 Gene3D G3DSA:3.40.30.10 207 351 1.2E-28 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS25700 ab14a9bb71c1e5e46db23729a76c0d2b 91 Pfam PF04324 BFD-like [2Fe-2S] binding domain 5 57 2.1E-16 T 11-11-2016 IPR007419 BFD-like [2Fe-2S]-binding domain Gferi_RS05225 802646224924f85ad12a4d266e6f8f0f 1349 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 320 571 4.1E-42 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Gferi_RS05225 802646224924f85ad12a4d266e6f8f0f 1349 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 4 257 1.4E-28 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Gferi_RS05225 802646224924f85ad12a4d266e6f8f0f 1349 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 632 847 1.2E-55 T 11-11-2016 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Gferi_RS05225 802646224924f85ad12a4d266e6f8f0f 1349 SUPERFAMILY SSF53067 2 256 1.1E-31 T 11-11-2016 Gferi_RS05225 802646224924f85ad12a4d266e6f8f0f 1349 Gene3D G3DSA:3.30.420.40 414 552 5.0E-50 T 11-11-2016 Gferi_RS05225 802646224924f85ad12a4d266e6f8f0f 1349 Gene3D G3DSA:3.30.420.40 96 235 2.8E-39 T 11-11-2016 Gferi_RS05225 802646224924f85ad12a4d266e6f8f0f 1349 SUPERFAMILY SSF53067 319 571 5.81E-41 T 11-11-2016 Gferi_RS05225 802646224924f85ad12a4d266e6f8f0f 1349 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 320 570 1.5E-51 T 11-11-2016 IPR008275 CoA enzyme activase Gferi_RS11310 da0085fc32e646537422e21a50f6c1b2 482 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 333 455 2.1E-9 T 11-11-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Gferi_RS11310 da0085fc32e646537422e21a50f6c1b2 482 Pfam PF13440 Polysaccharide biosynthesis protein 31 328 2.6E-18 T 11-11-2016 Gferi_RS19650 2572af118b55e9f76d55d19ef12384cb 210 PIRSF PIRSF031644 2 209 8.5E-76 T 11-11-2016 IPR008319 Uncharacterised conserved protein UCP031644 Gferi_RS19650 2572af118b55e9f76d55d19ef12384cb 210 SUPERFAMILY SSF55136 24 199 1.23E-9 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS19650 2572af118b55e9f76d55d19ef12384cb 210 Pfam PF06445 GyrI-like small molecule binding domain 20 203 6.5E-26 T 11-11-2016 IPR029442 GyrI-like small molecule binding domain Gferi_RS19650 2572af118b55e9f76d55d19ef12384cb 210 Gene3D G3DSA:3.20.80.10 2 207 1.9E-78 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS01895 94db6b565ae9fb6c1f82a5d1d755699a 151 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 151 86.441 T 11-11-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Gferi_RS01895 94db6b565ae9fb6c1f82a5d1d755699a 151 Pfam PF03477 ATP cone domain 50 136 3.1E-16 T 11-11-2016 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Gferi_RS01895 94db6b565ae9fb6c1f82a5d1d755699a 151 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 3.3E-67 T 11-11-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Gferi_RS23465 f2d1fb2aba10f20d4591e274fb4da7aa 817 Gene3D G3DSA:3.40.50.150 348 349 6.6E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23465 f2d1fb2aba10f20d4591e274fb4da7aa 817 Gene3D G3DSA:3.40.50.150 300 301 6.6E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23465 f2d1fb2aba10f20d4591e274fb4da7aa 817 Gene3D G3DSA:3.40.50.150 127 260 6.6E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23465 f2d1fb2aba10f20d4591e274fb4da7aa 817 Gene3D G3DSA:3.40.50.150 403 517 6.6E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23465 f2d1fb2aba10f20d4591e274fb4da7aa 817 Pfam PF01555 DNA methylase 149 496 3.4E-19 T 11-11-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 Gferi_RS23465 f2d1fb2aba10f20d4591e274fb4da7aa 817 SUPERFAMILY SSF53335 422 520 2.33E-41 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23465 f2d1fb2aba10f20d4591e274fb4da7aa 817 SUPERFAMILY SSF53335 124 308 2.33E-41 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS23465 f2d1fb2aba10f20d4591e274fb4da7aa 817 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 152 158 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Gferi_RS13780 e030fe4310f934479a9be54f473a658c 480 Pfam PF07435 YycH protein 4 425 7.0E-16 T 11-11-2016 IPR009996 Regulatory protein YycH Gferi_RS25160 c61b26338c272bb6a4692747b31d023c 429 SUPERFAMILY SSF117892 195 333 4.05E-12 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS25160 c61b26338c272bb6a4692747b31d023c 429 Pfam PF01145 SPFH domain / Band 7 family 177 343 8.2E-17 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS25160 c61b26338c272bb6a4692747b31d023c 429 SMART SM00244 139 327 0.0016 T 11-11-2016 IPR001107 Band 7 domain Gferi_RS04840 81942df8542904927920f952d473b730 109 Gene3D G3DSA:2.30.320.10 14 67 4.2E-7 T 11-11-2016 IPR015315 Protein of unknown function DUF1963 Gferi_RS20505 8c1187cdde8b16b1a0ffee178bf44a68 162 Pfam PF14221 Domain of unknown function (DUF4330) 1 159 3.8E-31 T 11-11-2016 IPR025480 Protein of unknown function DUF4330 Gferi_RS00835 5986008aa6b93c7062ec0576f70fdcbd 161 Pfam PF03975 CheD chemotactic sensory transduction 48 153 1.3E-35 T 11-11-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Gferi_RS00835 5986008aa6b93c7062ec0576f70fdcbd 161 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 1 157 28.38 T 11-11-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 Gferi_RS00835 5986008aa6b93c7062ec0576f70fdcbd 161 SUPERFAMILY SSF64438 5 159 4.76E-49 T 11-11-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic Gferi_RS20565 edb8c50051baa203cf80e4b029de865b 349 Pfam PF06089 L-asparaginase II 6 327 2.8E-111 T 11-11-2016 IPR010349 L-asparaginase II Gferi_RS14240 189e514bce571e36da36e25e9ec5da14 108 SUPERFAMILY SSF46785 6 99 2.02E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS14240 189e514bce571e36da36e25e9ec5da14 108 Pfam PF03551 Transcriptional regulator PadR-like family 18 85 7.1E-14 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS14240 189e514bce571e36da36e25e9ec5da14 108 Gene3D G3DSA:1.10.10.10 11 99 6.8E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS26485 e6d1adcdb916109d867c2380a3992609 360 Pfam PF14130 Domain of unknown function (DUF4297) 13 222 9.5E-45 T 11-11-2016 IPR025382 Domain of unknown function DUF4297 Gferi_RS18910 37dd3ed587e36e4161203c6d41de91e0 372 SUPERFAMILY SSF52540 5 73 1.47E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18910 37dd3ed587e36e4161203c6d41de91e0 372 SUPERFAMILY SSF52540 113 360 1.47E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18910 37dd3ed587e36e4161203c6d41de91e0 372 Gene3D G3DSA:3.40.50.300 4 84 2.4E-22 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18910 37dd3ed587e36e4161203c6d41de91e0 372 Gene3D G3DSA:3.40.50.300 126 240 2.4E-22 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18910 37dd3ed587e36e4161203c6d41de91e0 372 Gene3D G3DSA:3.40.50.300 304 360 2.0E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS18910 37dd3ed587e36e4161203c6d41de91e0 372 Pfam PF00580 UvrD/REP helicase N-terminal domain 2 50 1.3E-4 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 Gferi_RS18910 37dd3ed587e36e4161203c6d41de91e0 372 Pfam PF01443 Viral (Superfamily 1) RNA helicase 136 354 2.7E-8 T 11-11-2016 IPR027351 (+) RNA virus helicase core domain GO:0005524 Gferi_RS06530 de77a04ce24df3b9b7d67168a004a13f 353 SUPERFAMILY SSF52218 160 324 2.21E-18 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS06530 de77a04ce24df3b9b7d67168a004a13f 353 Pfam PF03358 NADPH-dependent FMN reductase 162 314 2.2E-16 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS06530 de77a04ce24df3b9b7d67168a004a13f 353 Gene3D G3DSA:3.40.50.360 163 318 2.3E-15 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS24620 6c197aa41f8479b2d4360eab3617616c 349 Gene3D G3DSA:3.40.710.10 7 335 1.1E-70 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS24620 6c197aa41f8479b2d4360eab3617616c 349 SUPERFAMILY SSF56601 3 339 8.02E-69 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like Gferi_RS24620 6c197aa41f8479b2d4360eab3617616c 349 Pfam PF00144 Beta-lactamase 12 339 6.3E-54 T 11-11-2016 IPR001466 Beta-lactamase-related Gferi_RS26975 dbeea5e8b80521a9950c5994eed2b00e 368 Gene3D G3DSA:3.60.21.10 144 313 1.3E-26 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS26975 dbeea5e8b80521a9950c5994eed2b00e 368 Pfam PF00149 Calcineurin-like phosphoesterase 144 307 7.2E-15 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS26975 dbeea5e8b80521a9950c5994eed2b00e 368 SUPERFAMILY SSF56300 140 363 8.52E-38 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS10920 e9b34a51b6300aab13e6feb021707f43 117 Gene3D G3DSA:1.10.287.950 17 98 9.4E-5 T 11-11-2016 Gferi_RS10920 e9b34a51b6300aab13e6feb021707f43 117 Pfam PF04728 Lipoprotein leucine-zipper 54 101 1.1E-7 T 11-11-2016 IPR006817 Lipoprotein leucine-zipper GO:0019867 Gferi_RS10920 e9b34a51b6300aab13e6feb021707f43 117 SUPERFAMILY SSF58100 8 101 2.07E-7 T 11-11-2016 Gferi_RS19430 6ea26edfa411bca181f77dcb8c116b5e 438 Pfam PF12831 FAD dependent oxidoreductase 27 430 1.9E-62 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19430 6ea26edfa411bca181f77dcb8c116b5e 438 Gene3D G3DSA:3.50.50.60 352 411 4.4E-23 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19430 6ea26edfa411bca181f77dcb8c116b5e 438 Gene3D G3DSA:3.50.50.60 25 201 4.4E-23 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19430 6ea26edfa411bca181f77dcb8c116b5e 438 SUPERFAMILY SSF51905 26 187 2.09E-22 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS19430 6ea26edfa411bca181f77dcb8c116b5e 438 SUPERFAMILY SSF51905 356 410 2.09E-22 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS25805 321f675ddde3af1e96856639e6bba415 515 PIRSF PIRSF038958 1 515 5.3E-116 T 11-11-2016 IPR024923 Peptidoglycan biosynthesis protein, SpoVB type Gferi_RS25805 321f675ddde3af1e96856639e6bba415 515 Pfam PF01943 Polysaccharide biosynthesis protein 7 304 5.2E-19 T 11-11-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Gferi_RS25805 321f675ddde3af1e96856639e6bba415 515 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 358 501 1.6E-23 T 11-11-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Gferi_RS04540 b7cd19337611da793102f3a1b63f49f2 533 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 27 516 2.4E-122 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 SMART SM00345 24 83 1.4E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 2.2E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 2.2E-7 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 Gene3D G3DSA:1.10.10.10 13 80 8.7E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 Pfam PF07702 UTRA domain 105 244 7.1E-26 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 83 3.0E-16 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 SUPERFAMILY SSF46785 16 95 1.67E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 SUPERFAMILY SSF64288 71 247 7.54E-36 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 Gene3D G3DSA:3.40.1410.10 81 246 2.8E-38 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain Gferi_RS19790 a1ccf5c428cf53eb628755533af2c01f 255 SMART SM00866 104 244 7.1E-25 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 Gferi_RS21825 e06ed610fb90639b6dc9e54dded50146 385 Pfam PF01966 HD domain 182 294 8.1E-15 T 11-11-2016 IPR006674 HD domain Gferi_RS21825 e06ed610fb90639b6dc9e54dded50146 385 TIGRFAM TIGR00277 HDIG: HDIG domain 179 264 4.1E-7 T 11-11-2016 IPR006675 HDIG domain Gferi_RS21825 e06ed610fb90639b6dc9e54dded50146 385 SUPERFAMILY SSF109604 177 334 1.23E-25 T 11-11-2016 Gferi_RS21825 e06ed610fb90639b6dc9e54dded50146 385 SMART SM00471 177 305 4.2E-9 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS21825 e06ed610fb90639b6dc9e54dded50146 385 Gene3D G3DSA:1.10.3210.10 166 303 4.2E-19 T 11-11-2016 IPR006674 HD domain Gferi_RS13560 0d56a4d56e5da9f70865b6c94f4a972e 211 Pfam PF07853 Protein of unknown function (DUF1648) 9 51 6.3E-14 T 11-11-2016 IPR012867 Domain of unknown function DUF1648 Gferi_RS13560 0d56a4d56e5da9f70865b6c94f4a972e 211 Pfam PF13630 SdpI/YhfL protein family 133 201 1.9E-19 T 11-11-2016 IPR025962 SdpI/YhfL protein family Gferi_RS13560 0d56a4d56e5da9f70865b6c94f4a972e 211 PIRSF PIRSF038959 1 211 5.0E-53 T 11-11-2016 IPR026272 Immunity protein SdpI Gferi_RS07525 8546e08c93a6cbce73b9c847d7587073 283 SUPERFAMILY SSF161098 6 275 4.19E-41 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07525 8546e08c93a6cbce73b9c847d7587073 283 Gene3D G3DSA:1.10.3720.10 15 276 6.1E-38 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS13705 a14cd4b1878746574388b26007cb0ef5 200 SUPERFAMILY SSF55729 1 136 3.42E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS13705 a14cd4b1878746574388b26007cb0ef5 200 Pfam PF13302 Acetyltransferase (GNAT) domain 1 134 9.1E-20 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS13705 a14cd4b1878746574388b26007cb0ef5 200 Gene3D G3DSA:3.40.630.30 1 147 1.0E-27 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS22495 8c176fa18e425bbd1f79e0c97e71257d 545 PIRSF PIRSF002741 1 545 2.1E-101 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS22495 8c176fa18e425bbd1f79e0c97e71257d 545 Gene3D G3DSA:3.10.105.10 295 511 2.2E-44 T 11-11-2016 Gferi_RS22495 8c176fa18e425bbd1f79e0c97e71257d 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 465 1.7E-80 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS22495 8c176fa18e425bbd1f79e0c97e71257d 545 SUPERFAMILY SSF53850 40 533 4.12E-115 T 11-11-2016 Gferi_RS22495 8c176fa18e425bbd1f79e0c97e71257d 545 Gene3D G3DSA:3.90.76.10 52 224 1.7E-45 T 11-11-2016 Gferi_RS01940 ea5b7ed47def35dbe2030514bc01e21b 249 Pfam PF08478 POTRA domain, FtsQ-type 41 109 6.4E-16 T 11-11-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type Gferi_RS10630 1d6479f369da1e76aee20af78ca4099a 207 PIRSF PIRSF037778 18 207 6.6E-50 T 11-11-2016 IPR025720 ECF transporter, Riboflavin transporter RibU GO:0005886|GO:0032217|GO:0032218 Gferi_RS10630 1d6479f369da1e76aee20af78ca4099a 207 Pfam PF12822 Protein of unknown function (DUF3816) 22 199 2.5E-25 T 11-11-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 Gferi_RS21845 e0483084e30444d1b98d694b1d63b76e 334 Gene3D G3DSA:1.10.3720.10 200 330 1.2E-14 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS21845 e0483084e30444d1b98d694b1d63b76e 334 Gene3D G3DSA:1.10.3720.10 90 162 1.2E-14 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS21845 e0483084e30444d1b98d694b1d63b76e 334 SUPERFAMILY SSF161098 91 159 2.18E-15 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS21845 e0483084e30444d1b98d694b1d63b76e 334 SUPERFAMILY SSF161098 197 318 2.18E-15 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS21845 e0483084e30444d1b98d694b1d63b76e 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 333 1.7E-37 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS04900 3ff21bc0ccb8d8f85dbb4c47b669ec8d 278 Gene3D G3DSA:2.40.50.100 67 143 6.6E-8 T 11-11-2016 Gferi_RS04900 3ff21bc0ccb8d8f85dbb4c47b669ec8d 278 SUPERFAMILY SSF51230 66 142 2.49E-7 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS15835 460f7c137311da2806febf658f423be6 115 PIRSF PIRSF012296 1 115 2.2E-55 T 11-11-2016 IPR009307 Ethanolamine utilisation EutS GO:0006580 Gferi_RS15835 460f7c137311da2806febf658f423be6 115 SMART SM00877 43 115 2.8E-15 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15835 460f7c137311da2806febf658f423be6 115 Pfam PF00936 BMC domain 44 104 5.5E-14 T 11-11-2016 IPR000249 Microcompartment protein, bacteria Gferi_RS15835 460f7c137311da2806febf658f423be6 115 SUPERFAMILY SSF143414 43 105 4.19E-15 T 11-11-2016 Gferi_RS07415 0dbf2385f6ecb80ff14d265564de203a 327 Pfam PF13280 WYL domain 149 319 6.5E-12 T 11-11-2016 IPR026881 WYL domain Gferi_RS22840 565a12c14acac4973b364da98d9cda0a 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 52 320 5.1E-65 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS22840 565a12c14acac4973b364da98d9cda0a 321 PIRSF PIRSF017082 1 321 5.8E-107 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS22840 565a12c14acac4973b364da98d9cda0a 321 SUPERFAMILY SSF53850 118 288 7.25E-13 T 11-11-2016 Gferi_RS13920 33fef2da897845385d36dbe5e3731c9b 278 PRINTS PR00164 ABC-2 type transport system membrane protein signature 153 177 4.2E-12 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS13920 33fef2da897845385d36dbe5e3731c9b 278 PRINTS PR00164 ABC-2 type transport system membrane protein signature 210 229 4.2E-12 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS13920 33fef2da897845385d36dbe5e3731c9b 278 PRINTS PR00164 ABC-2 type transport system membrane protein signature 190 209 4.2E-12 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS13920 33fef2da897845385d36dbe5e3731c9b 278 Pfam PF01061 ABC-2 type transporter 36 232 1.2E-21 T 11-11-2016 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Gferi_RS13920 33fef2da897845385d36dbe5e3731c9b 278 PIRSF PIRSF006648 7 266 9.5E-23 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS00460 68959627a5444ab79c120a26578d6e27 465 Pfam PF12704 MacB-like periplasmic core domain 14 223 3.5E-12 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS16585 c42291e21320fd05ff93edeeaf1ca2e4 470 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 166 401 1.3E-58 T 11-11-2016 IPR004108 Iron hydrogenase, large subunit, C-terminal Gferi_RS16585 c42291e21320fd05ff93edeeaf1ca2e4 470 SUPERFAMILY SSF53920 131 435 2.49E-70 T 11-11-2016 IPR009016 Iron hydrogenase Gferi_RS16585 c42291e21320fd05ff93edeeaf1ca2e4 470 Gene3D G3DSA:3.40.50.1780 129 190 1.4E-39 T 11-11-2016 Gferi_RS16585 c42291e21320fd05ff93edeeaf1ca2e4 470 Gene3D G3DSA:3.40.50.1780 235 348 1.4E-39 T 11-11-2016 Gferi_RS16585 c42291e21320fd05ff93edeeaf1ca2e4 470 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 132 143 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS05140 e9357335d0be6f2ed342631a5b9da863 585 Gene3D G3DSA:3.40.50.300 112 147 2.6E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05140 e9357335d0be6f2ed342631a5b9da863 585 Gene3D G3DSA:3.40.50.300 26 58 2.6E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05140 e9357335d0be6f2ed342631a5b9da863 585 Gene3D G3DSA:3.40.50.300 148 246 7.6E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05140 e9357335d0be6f2ed342631a5b9da863 585 Gene3D G3DSA:3.40.50.300 59 94 7.6E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05140 e9357335d0be6f2ed342631a5b9da863 585 SUPERFAMILY SSF52540 31 245 2.42E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS05140 e9357335d0be6f2ed342631a5b9da863 585 Pfam PF00350 Dynamin family 49 195 4.6E-31 T 11-11-2016 IPR022812 Dynamin superfamily Gferi_RS17720 066c39e1b623ff91066843b8bf044b93 185 SUPERFAMILY SSF55729 4 174 1.44E-43 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS17720 066c39e1b623ff91066843b8bf044b93 185 Gene3D G3DSA:3.40.630.30 4 175 1.9E-47 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS17720 066c39e1b623ff91066843b8bf044b93 185 Pfam PF13302 Acetyltransferase (GNAT) domain 10 150 1.1E-23 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS23170 eb162a0396087ad9d8609cbb5c01d4bc 70 SUPERFAMILY SSF55469 10 64 1.13E-7 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS23170 eb162a0396087ad9d8609cbb5c01d4bc 70 Gene3D G3DSA:3.40.109.10 9 62 4.5E-8 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS22370 a7f241e8f5dd6c579052d1423211a379 457 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 18 430 6.9E-95 T 11-11-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Gferi_RS22370 a7f241e8f5dd6c579052d1423211a379 457 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 19 402 1.9E-106 T 11-11-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 Gferi_RS22370 a7f241e8f5dd6c579052d1423211a379 457 SUPERFAMILY SSF50475 3 296 2.51E-76 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS22370 a7f241e8f5dd6c579052d1423211a379 457 SUPERFAMILY SSF143968 300 454 4.32E-36 T 11-11-2016 Gferi_RS22370 a7f241e8f5dd6c579052d1423211a379 457 Gene3D G3DSA:3.40.1670.10 314 429 5.3E-32 T 11-11-2016 Gferi_RS17915 dad8a63e2c1ba5e4e4218be64441ff4c 431 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 12 420 9.4E-114 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS17915 dad8a63e2c1ba5e4e4218be64441ff4c 431 PIRSF PIRSF006066 6 431 9.4E-155 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS17915 dad8a63e2c1ba5e4e4218be64441ff4c 431 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 22 426 7.3E-127 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 Gferi_RS22165 c9a0356b3762e5b40efa5596679f52e7 233 Gene3D G3DSA:3.30.457.10 123 150 9.4E-10 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22165 c9a0356b3762e5b40efa5596679f52e7 233 Gene3D G3DSA:3.30.457.10 53 122 1.7E-32 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22165 c9a0356b3762e5b40efa5596679f52e7 233 Pfam PF07833 Copper amine oxidase N-terminal domain 50 141 7.9E-34 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS22165 c9a0356b3762e5b40efa5596679f52e7 233 SUPERFAMILY SSF55383 52 136 5.36E-30 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS00320 5a93f74b8706ecb05e5de80a1459d913 379 TIGRFAM TIGR02829 spore_III_AE: stage III sporulation protein AE 24 372 2.0E-115 T 11-11-2016 IPR014194 Sporulation stage III, protein AE Gferi_RS00320 5a93f74b8706ecb05e5de80a1459d913 379 Pfam PF09546 Stage III sporulation protein AE (spore_III_AE) 51 372 1.2E-108 T 11-11-2016 IPR014194 Sporulation stage III, protein AE Gferi_RS06595 2b189837a681fabc11f797c2b019c754 332 Pfam PF13556 PucR C-terminal helix-turn-helix domain 269 323 3.9E-18 T 11-11-2016 IPR025736 PucR C-terminal helix-turn-helix domain Gferi_RS06595 2b189837a681fabc11f797c2b019c754 332 Gene3D G3DSA:1.10.10.60 275 303 1.8E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS26495 17a4c4a383da1a236bd956c45ae9c4fb 200 SUPERFAMILY SSF52980 1 199 6.97E-50 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Gferi_RS26495 17a4c4a383da1a236bd956c45ae9c4fb 200 PIRSF PIRSF009309 2 200 3.9E-65 T 11-11-2016 IPR004194 Restriction endonuclease, type II, BamHI Gferi_RS26495 17a4c4a383da1a236bd956c45ae9c4fb 200 Gene3D G3DSA:3.40.91.20 1 200 2.2E-75 T 11-11-2016 IPR011338 Restriction endonuclease, type II, BamHI/BglIII/BstY GO:0000287|GO:0003677|GO:0009036|GO:0009307 Gferi_RS26495 17a4c4a383da1a236bd956c45ae9c4fb 200 Pfam PF02923 Restriction endonuclease BamHI 8 159 2.2E-57 T 11-11-2016 IPR004194 Restriction endonuclease, type II, BamHI Gferi_RS21360 55e8fc1a2570f88e690ff30a4f206ad3 246 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 20 165 4.0E-34 T 11-11-2016 IPR004474 Cell envelope-related transcriptional attenuator domain Gferi_RS21360 55e8fc1a2570f88e690ff30a4f206ad3 246 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 20 165 1.4E-35 T 11-11-2016 IPR004474 Cell envelope-related transcriptional attenuator domain Gferi_RS09705 612493dcb659faed907629638826ac2a 233 SUPERFAMILY SSF89562 24 189 6.15E-44 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS09705 612493dcb659faed907629638826ac2a 233 Gene3D G3DSA:3.50.30.40 25 185 8.9E-50 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS09705 612493dcb659faed907629638826ac2a 233 Pfam PF03737 Demethylmenaquinone methyltransferase 28 178 2.1E-42 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS13990 600dfa21350bfd2d481231bc0817d067 552 PIRSF PIRSF002741 2 549 5.9E-124 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Gferi_RS13990 600dfa21350bfd2d481231bc0817d067 552 SUPERFAMILY SSF53850 43 544 7.24E-135 T 11-11-2016 Gferi_RS13990 600dfa21350bfd2d481231bc0817d067 552 Gene3D G3DSA:3.90.76.10 54 227 2.1E-54 T 11-11-2016 Gferi_RS13990 600dfa21350bfd2d481231bc0817d067 552 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 86 472 1.7E-94 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain Gferi_RS13990 600dfa21350bfd2d481231bc0817d067 552 Gene3D G3DSA:3.10.105.10 300 520 3.0E-59 T 11-11-2016 Gferi_RS09040 4c30cbfcfb88e3c389feb39e90f8b6d3 541 Pfam PF01546 Peptidase family M20/M25/M40 122 291 3.9E-11 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS09040 4c30cbfcfb88e3c389feb39e90f8b6d3 541 Gene3D G3DSA:3.40.630.10 2 315 6.1E-36 T 11-11-2016 Gferi_RS09040 4c30cbfcfb88e3c389feb39e90f8b6d3 541 SUPERFAMILY SSF53187 3 226 2.63E-26 T 11-11-2016 Gferi_RS09040 4c30cbfcfb88e3c389feb39e90f8b6d3 541 SUPERFAMILY SSF53187 435 467 2.63E-26 T 11-11-2016 Gferi_RS09040 4c30cbfcfb88e3c389feb39e90f8b6d3 541 SUPERFAMILY SSF53187 498 540 2.63E-26 T 11-11-2016 Gferi_RS09040 4c30cbfcfb88e3c389feb39e90f8b6d3 541 PIRSF PIRSF010386 1 541 4.9E-180 T 11-11-2016 IPR012166 Uncharacterised protein family RocB Gferi_RS13830 3d6749dd0c1ef0fd2604b500bbd27b47 65 Pfam PF08357 SEFIR domain 7 45 9.7E-6 T 11-11-2016 IPR013568 SEFIR domain Gferi_RS08205 1ecad26246eebe4218a3348efd56781c 532 Pfam PF00174 Oxidoreductase molybdopterin binding domain 244 335 1.5E-10 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08205 1ecad26246eebe4218a3348efd56781c 532 SUPERFAMILY SSF56524 216 337 5.36E-16 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08205 1ecad26246eebe4218a3348efd56781c 532 Gene3D G3DSA:3.90.420.10 247 337 8.3E-12 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 Gferi_RS08205 1ecad26246eebe4218a3348efd56781c 532 SMART SM00900 90 181 1.5E-11 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS08205 1ecad26246eebe4218a3348efd56781c 532 Pfam PF04205 FMN-binding domain 90 178 2.7E-14 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS24750 b9f11162cac298e51dbbe2b3d0a0476d 431 Gene3D G3DSA:3.30.420.10 249 400 8.7E-8 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS24750 b9f11162cac298e51dbbe2b3d0a0476d 431 Pfam PF13936 Helix-turn-helix domain 3 43 1.8E-13 T 11-11-2016 IPR025246 Transposase IS30-like HTH domain Gferi_RS24750 b9f11162cac298e51dbbe2b3d0a0476d 431 SUPERFAMILY SSF53098 249 400 9.61E-14 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS24750 b9f11162cac298e51dbbe2b3d0a0476d 431 Gene3D G3DSA:1.10.1750.10 20 50 0.001 T 11-11-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Gferi_RS01700 d2952728d24ab49dd7f7de22bd598782 252 Pfam PF01976 Protein of unknown function DUF116 91 243 5.6E-53 T 11-11-2016 IPR002829 Protein of unknown function DUF116 Gferi_RS01700 d2952728d24ab49dd7f7de22bd598782 252 PIRSF PIRSF006594 6 249 8.5E-51 T 11-11-2016 IPR002829 Protein of unknown function DUF116 Gferi_RS08970 5c78c6ef79ee06f9af021f6756346ecb 87 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 32 80 7.7E-10 T 11-11-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Gferi_RS21385 6ff98c173979bcbbb6e727d210064026 293 SUPERFAMILY SSF52096 18 265 1.27E-38 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS21385 6ff98c173979bcbbb6e727d210064026 293 Pfam PF00378 Enoyl-CoA hydratase/isomerase 114 276 3.7E-25 T 11-11-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 Gferi_RS21385 6ff98c173979bcbbb6e727d210064026 293 Gene3D G3DSA:3.90.226.10 13 265 1.2E-40 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS09200 922c6d743a6df655e2e685556ef45864 377 Pfam PF12698 ABC-2 family transporter protein 26 369 3.0E-43 T 11-11-2016 Gferi_RS07055 83206d0a016bc230a6e910515f6b2c7f 271 Pfam PF02535 ZIP Zinc transporter 121 266 1.5E-23 T 11-11-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Gferi_RS26280 4e5945a6ff680a638cb66b0a670f9956 276 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 10 272 5.7E-37 T 11-11-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 Gferi_RS26280 4e5945a6ff680a638cb66b0a670f9956 276 PIRSF PIRSF038471 1 276 2.4E-65 T 11-11-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 Gferi_RS26280 4e5945a6ff680a638cb66b0a670f9956 276 Pfam PF04085 rod shape-determining protein MreC 126 271 1.8E-41 T 11-11-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 Gferi_RS22830 a194262b28cd04e33c1161d5b480ebe1 259 SUPERFAMILY SSF55781 81 257 1.83E-50 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS22830 a194262b28cd04e33c1161d5b480ebe1 259 Gene3D G3DSA:1.10.10.10 2 77 1.3E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22830 a194262b28cd04e33c1161d5b480ebe1 259 SUPERFAMILY SSF46785 9 81 3.45E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS22830 a194262b28cd04e33c1161d5b480ebe1 259 Pfam PF09339 IclR helix-turn-helix domain 11 61 2.7E-13 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS22830 a194262b28cd04e33c1161d5b480ebe1 259 SMART SM00346 9 99 6.4E-25 T 11-11-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Gferi_RS22830 a194262b28cd04e33c1161d5b480ebe1 259 Gene3D G3DSA:3.30.450.40 83 257 7.1E-61 T 11-11-2016 IPR029016 GAF domain-like Gferi_RS22830 a194262b28cd04e33c1161d5b480ebe1 259 Pfam PF01614 Bacterial transcriptional regulator 128 253 2.0E-39 T 11-11-2016 IPR014757 Transcription regulator IclR, C-terminal Gferi_RS12485 2b829a0d9c0ec116d0435228ad268589 143 SUPERFAMILY SSF46785 4 141 9.97E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12485 2b829a0d9c0ec116d0435228ad268589 143 SMART SM00347 24 126 1.4E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS12485 2b829a0d9c0ec116d0435228ad268589 143 Pfam PF12802 MarR family 30 89 9.0E-13 T 11-11-2016 Gferi_RS12485 2b829a0d9c0ec116d0435228ad268589 143 Gene3D G3DSA:1.10.10.10 2 140 2.8E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12485 2b829a0d9c0ec116d0435228ad268589 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 3.9E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS12485 2b829a0d9c0ec116d0435228ad268589 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 3.9E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS12485 2b829a0d9c0ec116d0435228ad268589 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 3.9E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS12485 2b829a0d9c0ec116d0435228ad268589 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 3.9E-8 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS04205 2c3469ff27b80f54f2255e01623df0b1 70 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 9 57 4.7E-8 T 11-11-2016 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 Gferi_RS12310 68d8b405858c3f6bdaeb56009368bdf9 473 SMART SM00481 157 219 6.3E-12 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 Gferi_RS12310 68d8b405858c3f6bdaeb56009368bdf9 473 SUPERFAMILY SSF89550 153 367 4.97E-41 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Gferi_RS12310 68d8b405858c3f6bdaeb56009368bdf9 473 Gene3D G3DSA:3.20.20.140 154 332 2.2E-23 T 11-11-2016 Gferi_RS12310 68d8b405858c3f6bdaeb56009368bdf9 473 Pfam PF02811 PHP domain 158 321 5.8E-7 T 11-11-2016 IPR004013 PHP domain GO:0003824 Gferi_RS13900 6b537472c94bf8a6ad4e7c4fb0dfc9f1 200 Gene3D G3DSA:3.40.50.10490 13 183 3.3E-38 T 11-11-2016 Gferi_RS13900 6b537472c94bf8a6ad4e7c4fb0dfc9f1 200 SUPERFAMILY SSF53697 4 183 4.67E-37 T 11-11-2016 Gferi_RS13900 6b537472c94bf8a6ad4e7c4fb0dfc9f1 200 Pfam PF13580 SIS domain 8 144 8.8E-21 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Gferi_RS26955 0e3fa4a3c7953029fcbf67519b901350 132 Pfam PF10694 Protein of unknown function (DUF2500) 20 124 6.7E-38 T 11-11-2016 IPR019635 Protein of unknown function DUF2500 Gferi_RS06175 603069d16f6f397c94dc4fae117fa4d4 232 Pfam PF04298 Putative neutral zinc metallopeptidase 10 224 3.3E-86 T 11-11-2016 IPR007395 Putative neutral zinc metallopeptidase Gferi_RS20475 58fd15d0e6f3738894eef3b4622ddd08 213 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 52 208 1.9E-6 T 11-11-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like Gferi_RS20475 58fd15d0e6f3738894eef3b4622ddd08 213 Gene3D G3DSA:2.50.20.10 34 208 1.1E-16 T 11-11-2016 Gferi_RS20475 58fd15d0e6f3738894eef3b4622ddd08 213 SUPERFAMILY SSF89392 34 208 2.49E-16 T 11-11-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX Gferi_RS22925 dede261440013d422b4db389a3e78581 136 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 16 129 9.9E-24 T 11-11-2016 IPR010181 CGCAxxGCC motif Gferi_RS22925 dede261440013d422b4db389a3e78581 136 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 17 128 1.7E-23 T 11-11-2016 IPR010181 CGCAxxGCC motif Gferi_RS24745 999218744d41703f6fcf797d05fd7a2a 150 Gene3D G3DSA:3.40.630.30 4 143 5.7E-30 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS24745 999218744d41703f6fcf797d05fd7a2a 150 Pfam PF00583 Acetyltransferase (GNAT) family 58 139 1.7E-15 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS24745 999218744d41703f6fcf797d05fd7a2a 150 SUPERFAMILY SSF55729 6 142 7.67E-27 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS14370 02701b3fdbd5e5674f4afbe36836d0a6 352 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 194 346 3.6E-29 T 11-11-2016 IPR017516 AbrB duplication Gferi_RS14370 02701b3fdbd5e5674f4afbe36836d0a6 352 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 4 157 3.0E-35 T 11-11-2016 IPR017516 AbrB duplication Gferi_RS14370 02701b3fdbd5e5674f4afbe36836d0a6 352 PIRSF PIRSF038991 1 351 3.0E-68 T 11-11-2016 IPR007820 AbrB family GO:0010468|GO:0016021 Gferi_RS14370 02701b3fdbd5e5674f4afbe36836d0a6 352 Pfam PF05145 Putative ammonia monooxygenase 3 158 6.1E-31 T 11-11-2016 IPR007820 AbrB family GO:0010468|GO:0016021 Gferi_RS14370 02701b3fdbd5e5674f4afbe36836d0a6 352 Pfam PF05145 Putative ammonia monooxygenase 182 346 6.3E-26 T 11-11-2016 IPR007820 AbrB family GO:0010468|GO:0016021 Gferi_RS22605 7abbcd397e1f2575c74032c59ceb7e7e 498 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 16 438 2.1E-138 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane Gferi_RS11270 8d454ac9e5da44789e7ff573f9ef74bd 523 SUPERFAMILY SSF48208 320 471 3.23E-8 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 Gferi_RS03755 4823e3e8cad68a86038af9286d402dbb 462 Gene3D G3DSA:3.40.50.300 200 423 2.2E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03755 4823e3e8cad68a86038af9286d402dbb 462 SUPERFAMILY SSF52540 81 351 1.88E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03755 4823e3e8cad68a86038af9286d402dbb 462 Gene3D G3DSA:3.30.450.90 95 194 5.0E-13 T 11-11-2016 Gferi_RS03755 4823e3e8cad68a86038af9286d402dbb 462 Pfam PF00437 Type II/IV secretion system protein 99 372 2.1E-39 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 Gferi_RS14590 6daa089790e431b443290aea9d57f440 357 Pfam PF04865 Baseplate J-like protein 59 303 5.4E-66 T 11-11-2016 IPR006949 Baseplate protein J-like Gferi_RS25330 24177bad531f8b7157fdb2e448cc74fb 519 SUPERFAMILY SSF48557 17 511 2.43E-152 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 Gferi_RS25330 24177bad531f8b7157fdb2e448cc74fb 519 Pfam PF00221 Aromatic amino acid lyase 22 478 7.8E-155 T 11-11-2016 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Gferi_RS25330 24177bad531f8b7157fdb2e448cc74fb 519 Gene3D G3DSA:1.10.275.10 16 205 1.2E-57 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal Gferi_RS25330 24177bad531f8b7157fdb2e448cc74fb 519 Gene3D G3DSA:1.20.200.10 207 516 4.2E-98 T 11-11-2016 Gferi_RS04750 b9c70d659f87c5d923f1c6cf6ece616f 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 265 4.9E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS04750 b9c70d659f87c5d923f1c6cf6ece616f 269 SUPERFAMILY SSF161098 72 253 3.92E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS04750 b9c70d659f87c5d923f1c6cf6ece616f 269 Gene3D G3DSA:1.10.3720.10 71 267 3.7E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20430 a4df325d6f17d0c7f7ca99bdaeafc0cc 233 Pfam PF00072 Response regulator receiver domain 7 115 2.1E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS20430 a4df325d6f17d0c7f7ca99bdaeafc0cc 233 SMART SM00448 5 115 2.4E-45 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS20430 a4df325d6f17d0c7f7ca99bdaeafc0cc 233 SMART SM00862 153 229 5.2E-29 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS20430 a4df325d6f17d0c7f7ca99bdaeafc0cc 233 Gene3D G3DSA:1.10.10.10 153 229 9.8E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20430 a4df325d6f17d0c7f7ca99bdaeafc0cc 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 9.3E-27 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Gferi_RS20430 a4df325d6f17d0c7f7ca99bdaeafc0cc 233 SUPERFAMILY SSF52172 3 130 5.83E-42 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS20430 a4df325d6f17d0c7f7ca99bdaeafc0cc 233 SUPERFAMILY SSF46894 137 229 9.35E-30 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Gferi_RS20430 a4df325d6f17d0c7f7ca99bdaeafc0cc 233 Gene3D G3DSA:3.40.50.2300 2 152 7.6E-43 T 11-11-2016 Gferi_RS15035 d7cec5427832d384048fdcdef00ae74d 439 SUPERFAMILY SSF51905 296 343 4.18E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS15035 d7cec5427832d384048fdcdef00ae74d 439 SUPERFAMILY SSF51905 2 155 4.18E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS15035 d7cec5427832d384048fdcdef00ae74d 439 Gene3D G3DSA:3.50.50.60 2 193 2.7E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS15035 d7cec5427832d384048fdcdef00ae74d 439 Gene3D G3DSA:3.50.50.60 302 378 2.7E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS15035 d7cec5427832d384048fdcdef00ae74d 439 Pfam PF01134 Glucose inhibited division protein A 3 223 2.2E-23 T 11-11-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Gferi_RS15035 d7cec5427832d384048fdcdef00ae74d 439 Pfam PF01134 Glucose inhibited division protein A 272 351 1.6E-11 T 11-11-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Gferi_RS14995 67e33e9c65929f2530e15d66ba39e3ee 438 Pfam PF04055 Radical SAM superfamily 165 325 7.2E-13 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS14995 67e33e9c65929f2530e15d66ba39e3ee 438 SUPERFAMILY SSF102114 140 349 7.46E-37 T 11-11-2016 Gferi_RS14995 67e33e9c65929f2530e15d66ba39e3ee 438 SMART SM00729 159 363 1.7E-21 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 Gferi_RS14995 67e33e9c65929f2530e15d66ba39e3ee 438 Gene3D G3DSA:3.80.30.20 160 355 2.5E-42 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe Gferi_RS23055 584934bf704b56c4af4c904ad10633b6 272 Gene3D G3DSA:3.40.50.10780 1 208 1.9E-75 T 11-11-2016 IPR027476 D-aminopeptidase, N-terminal Gferi_RS23055 584934bf704b56c4af4c904ad10633b6 272 Gene3D G3DSA:3.30.1360.130 209 269 1.1E-19 T 11-11-2016 Gferi_RS23055 584934bf704b56c4af4c904ad10633b6 272 Pfam PF04951 D-aminopeptidase 1 259 2.3E-96 T 11-11-2016 IPR007035 Peptidase M55, D-aminopeptidase Gferi_RS23055 584934bf704b56c4af4c904ad10633b6 272 SUPERFAMILY SSF63992 1 268 1.44E-89 T 11-11-2016 IPR007035 Peptidase M55, D-aminopeptidase Gferi_RS23055 584934bf704b56c4af4c904ad10633b6 272 PIRSF PIRSF015853 1 272 1.9E-90 T 11-11-2016 IPR007035 Peptidase M55, D-aminopeptidase Gferi_RS07745 2d982f7f1838c73a866e7bc8549c793a 497 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 10 428 1.1E-133 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane Gferi_RS14085 498a069e4585346794d984a1e97955c0 116 PIRSF PIRSF033199 1 116 6.0E-59 T 11-11-2016 IPR014580 Uncharacterised conserved protein UCP033199 Gferi_RS14085 498a069e4585346794d984a1e97955c0 116 Pfam PF09966 Uncharacterized protein conserved in bacteria (DUF2200) 6 115 8.3E-55 T 11-11-2016 IPR014580 Uncharacterised conserved protein UCP033199 Gferi_RS14085 498a069e4585346794d984a1e97955c0 116 Gene3D G3DSA:1.10.8.290 2 116 2.4E-60 T 11-11-2016 IPR023204 SP1917 domain Gferi_RS09840 fdc5c4d55f3a050c163032e04008a9be 118 PIRSF PIRSF016789 1 118 2.1E-33 T 11-11-2016 IPR007401 Protein of unknown function DUF454 Gferi_RS09840 fdc5c4d55f3a050c163032e04008a9be 118 Pfam PF04304 Protein of unknown function (DUF454) 2 117 9.9E-38 T 11-11-2016 IPR007401 Protein of unknown function DUF454 Gferi_RS21990 fbc9c91bd6db00e0fe8046ea3bc03448 110 SUPERFAMILY SSF103481 6 106 8.76E-22 T 11-11-2016 Gferi_RS21990 fbc9c91bd6db00e0fe8046ea3bc03448 110 Pfam PF00893 Small Multidrug Resistance protein 4 95 3.1E-28 T 11-11-2016 IPR000390 Small multidrug resistance protein family GO:0016021 Gferi_RS04860 b98e36950105932c37205ac2993704ec 278 Gene3D G3DSA:1.50.10.20 13 182 2.6E-15 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS04860 b98e36950105932c37205ac2993704ec 278 SUPERFAMILY SSF48239 14 217 1.68E-22 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Gferi_RS02110 7ed2cce57ec5f6bcc8e85bdfe9a8c47e 298 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 258 3.1E-40 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS12610 5ce2dde2e6c286f945168dc11be15d7e 368 SUPERFAMILY SSF53383 33 362 6.35E-29 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS12610 5ce2dde2e6c286f945168dc11be15d7e 368 Pfam PF00266 Aminotransferase class-V 53 226 1.9E-10 T 11-11-2016 IPR000192 Aminotransferase class V domain Gferi_RS12610 5ce2dde2e6c286f945168dc11be15d7e 368 Gene3D G3DSA:3.40.640.10 33 240 2.8E-22 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS25825 fdc586583fd4a6e51030f9112aed644a 208 SUPERFAMILY SSF53850 3 204 7.06E-64 T 11-11-2016 Gferi_RS25825 fdc586583fd4a6e51030f9112aed644a 208 Gene3D G3DSA:3.40.190.10 4 142 2.7E-41 T 11-11-2016 Gferi_RS25825 fdc586583fd4a6e51030f9112aed644a 208 Pfam PF01634 ATP phosphoribosyltransferase 53 203 5.6E-51 T 11-11-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Gferi_RS25825 fdc586583fd4a6e51030f9112aed644a 208 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 3 208 50.845 T 11-11-2016 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 Gferi_RS25825 fdc586583fd4a6e51030f9112aed644a 208 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 4 184 1.6E-62 T 11-11-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Gferi_RS25825 fdc586583fd4a6e51030f9112aed644a 208 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 143 164 - T 11-11-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 Gferi_RS17670 e25d388b0d917b956d2a41c8dd6546e4 440 Pfam PF07670 Nucleoside recognition 130 229 1.5E-9 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS04195 66f3d61557fccc3eae1d2f87d1051171 246 SUPERFAMILY SSF52467 2 243 3.07E-78 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS04195 66f3d61557fccc3eae1d2f87d1051171 246 Gene3D G3DSA:3.30.1600.10 34 73 4.2E-24 T 11-11-2016 IPR026591 Sirtuin family, catalytic core small domain Gferi_RS04195 66f3d61557fccc3eae1d2f87d1051171 246 Gene3D G3DSA:3.30.1600.10 122 170 4.2E-24 T 11-11-2016 IPR026591 Sirtuin family, catalytic core small domain Gferi_RS04195 66f3d61557fccc3eae1d2f87d1051171 246 Gene3D G3DSA:3.40.50.1220 3 33 1.4E-44 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS04195 66f3d61557fccc3eae1d2f87d1051171 246 Gene3D G3DSA:3.40.50.1220 175 245 1.4E-44 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS04195 66f3d61557fccc3eae1d2f87d1051171 246 Gene3D G3DSA:3.40.50.1220 84 121 1.4E-44 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain Gferi_RS04195 66f3d61557fccc3eae1d2f87d1051171 246 Pfam PF02146 Sir2 family 23 199 2.3E-51 T 11-11-2016 IPR003000 Sirtuin family GO:0070403 Gferi_RS10985 dcd69bdf9a62b2de6d6aa9e6f043f9eb 187 Pfam PF07997 Protein of unknown function (DUF1694) 8 121 7.2E-30 T 11-11-2016 IPR012543 Protein of unknown function DUF1694 Gferi_RS10985 dcd69bdf9a62b2de6d6aa9e6f043f9eb 187 Gene3D G3DSA:3.30.1330.30 8 125 8.4E-28 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS10985 dcd69bdf9a62b2de6d6aa9e6f043f9eb 187 SUPERFAMILY SSF160515 7 125 9.55E-28 T 11-11-2016 Gferi_RS13280 7a55a6e6c349dc22bba550d91fcb52c1 210 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 12 199 2.1E-65 T 11-11-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Gferi_RS13280 7a55a6e6c349dc22bba550d91fcb52c1 210 Pfam PF02096 60Kd inner membrane protein 13 199 1.4E-63 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 Gferi_RS16990 f2b34895854963a820e5e94f7cb5633b 258 SMART SM00646 122 236 9.2E-22 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS16990 f2b34895854963a820e5e94f7cb5633b 258 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 51 236 1.3E-40 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS16990 f2b34895854963a820e5e94f7cb5633b 258 Gene3D G3DSA:3.40.630.40 50 238 8.5E-46 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Gferi_RS16990 f2b34895854963a820e5e94f7cb5633b 258 SUPERFAMILY SSF53187 50 238 4.08E-40 T 11-11-2016 Gferi_RS06980 93955ffc3b054e898ccd85f924c19543 270 Gene3D G3DSA:2.130.10.10 198 269 1.3E-14 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 Gferi_RS06980 93955ffc3b054e898ccd85f924c19543 270 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 240 270 2.7E-7 T 11-11-2016 IPR011964 YVTN beta-propeller repeat Gferi_RS06980 93955ffc3b054e898ccd85f924c19543 270 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 197 232 4.4E-13 T 11-11-2016 IPR011964 YVTN beta-propeller repeat Gferi_RS06980 93955ffc3b054e898ccd85f924c19543 270 SUPERFAMILY SSF51004 198 268 3.14E-12 T 11-11-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain Gferi_RS12270 3d2fd22e61e560fb8300ac1a85fc8d8d 377 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 2 367 1.4E-75 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS12270 3d2fd22e61e560fb8300ac1a85fc8d8d 377 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 202 366 9.6E-26 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS08560 056cc65c8cda812d32f57cbcc2ffc62f 289 TIGRFAM TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase 9 288 5.2E-90 T 11-11-2016 IPR006371 4-hydroxybenzoate polyprenyltransferase-related Gferi_RS08560 056cc65c8cda812d32f57cbcc2ffc62f 289 Pfam PF01040 UbiA prenyltransferase family 26 260 1.1E-53 T 11-11-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 Gferi_RS00100 13b575204d4e477f7d772586f66ab3e9 154 SUPERFAMILY SSF55729 3 116 3.92E-10 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS00100 13b575204d4e477f7d772586f66ab3e9 154 Gene3D G3DSA:3.40.630.30 4 114 6.6E-10 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS00660 839fe6a34fb3d54a6265cc7b309ae7b2 244 Pfam PF00574 Clp protease 44 212 3.5E-26 T 11-11-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Gferi_RS00660 839fe6a34fb3d54a6265cc7b309ae7b2 244 SUPERFAMILY SSF52096 25 219 2.65E-37 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS00660 839fe6a34fb3d54a6265cc7b309ae7b2 244 Gene3D G3DSA:3.90.226.10 26 212 1.1E-21 T 11-11-2016 IPR029045 ClpP/crotonase-like domain Gferi_RS14560 0458f287af74d6d1452165ea900e226c 131 Pfam PF08890 Phage XkdN-like tail assembly chaperone protein, TAC 7 130 5.3E-28 T 11-11-2016 IPR014986 Clostridium phage phiCD119, XkdN Gferi_RS04765 6de4976fdd8c4096cddda4958598cdf8 153 Pfam PF12724 Flavodoxin domain 11 100 8.0E-11 T 11-11-2016 IPR026816 Flavodoxin domain Gferi_RS04765 6de4976fdd8c4096cddda4958598cdf8 153 SUPERFAMILY SSF52218 3 150 3.28E-22 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS04765 6de4976fdd8c4096cddda4958598cdf8 153 Gene3D G3DSA:3.40.50.360 3 149 6.6E-19 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS03650 6d24ee1cd7c6ce086392415087dc1ce8 108 SUPERFAMILY SSF47413 4 68 1.94E-12 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS03650 6d24ee1cd7c6ce086392415087dc1ce8 108 SMART SM00530 9 64 1.8E-5 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS03650 6d24ee1cd7c6ce086392415087dc1ce8 108 Pfam PF12844 Helix-turn-helix domain 8 66 1.3E-7 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Gferi_RS03650 6d24ee1cd7c6ce086392415087dc1ce8 108 Gene3D G3DSA:1.10.260.40 3 69 3.4E-15 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 Gferi_RS02980 2c68829def23aa52091cc889031fa4f0 536 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 13 509 4.6E-126 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS24405 69091608e1975c0e3af7b5083878e8b3 107 PIRSF PIRSF000181 1 107 8.6E-60 T 11-11-2016 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 Gferi_RS24405 69091608e1975c0e3af7b5083878e8b3 107 Pfam PF04723 Glycine reductase complex selenoprotein A 1 101 1.3E-51 T 11-11-2016 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 Gferi_RS14225 73309326c51572e2c625b54596772753 285 SUPERFAMILY SSF53067 2 283 2.01E-47 T 11-11-2016 Gferi_RS14225 73309326c51572e2c625b54596772753 285 Gene3D G3DSA:3.30.420.40 104 283 2.4E-68 T 11-11-2016 Gferi_RS14225 73309326c51572e2c625b54596772753 285 Gene3D G3DSA:3.30.420.40 2 103 7.1E-37 T 11-11-2016 Gferi_RS14225 73309326c51572e2c625b54596772753 285 Pfam PF00480 ROK family 3 283 6.4E-74 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS14225 73309326c51572e2c625b54596772753 285 ProSitePatterns PS01125 ROK family signature. 129 154 - T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS06390 664dad7bee88c175783d7174dc17d695 304 Pfam PF01979 Amidohydrolase family 2 292 1.8E-17 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 Gferi_RS06390 664dad7bee88c175783d7174dc17d695 304 Gene3D G3DSA:3.20.20.140 2 289 4.1E-45 T 11-11-2016 Gferi_RS06390 664dad7bee88c175783d7174dc17d695 304 SUPERFAMILY SSF51556 2 288 3.03E-40 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS09210 b21de42161f2ab8f4b7864bdbab487d0 342 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 34 301 4.7E-18 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Gferi_RS09210 b21de42161f2ab8f4b7864bdbab487d0 342 SUPERFAMILY SSF111369 38 123 1.57E-7 T 11-11-2016 Gferi_RS09210 b21de42161f2ab8f4b7864bdbab487d0 342 Gene3D G3DSA:2.40.50.100 47 80 2.0E-13 T 11-11-2016 Gferi_RS09210 b21de42161f2ab8f4b7864bdbab487d0 342 Gene3D G3DSA:2.40.50.100 221 253 2.0E-13 T 11-11-2016 Gferi_RS09210 b21de42161f2ab8f4b7864bdbab487d0 342 SUPERFAMILY SSF111369 157 316 1.12E-6 T 11-11-2016 Gferi_RS12530 575f97e7ba27bde15c0623b742a14c41 404 SUPERFAMILY SSF109604 191 351 1.57E-9 T 11-11-2016 Gferi_RS12530 575f97e7ba27bde15c0623b742a14c41 404 Pfam PF13487 HD domain 245 305 5.3E-10 T 11-11-2016 Gferi_RS23985 409bc5368dba26251a46764197f5be76 233 TIGRFAM TIGR01906 integ_TIGR01906: integral membrane protein TIGR01906 11 224 3.0E-32 T 11-11-2016 IPR010178 Integral membrane protein 1906 Gferi_RS23985 409bc5368dba26251a46764197f5be76 233 Pfam PF07314 Protein of unknown function (DUF1461) 15 199 1.1E-47 T 11-11-2016 IPR010178 Integral membrane protein 1906 Gferi_RS02530 f8b3495d68d6f56a22aa8bc16785aad8 158 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 22 146 1.3E-30 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 Gene3D G3DSA:3.40.630.10 13 211 5.1E-68 T 11-11-2016 Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 Gene3D G3DSA:3.40.630.10 357 419 5.1E-68 T 11-11-2016 Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 Pfam PF01546 Peptidase family M20/M25/M40 97 414 1.9E-38 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 96 105 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 SUPERFAMILY SSF53187 333 418 6.56E-65 T 11-11-2016 Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 SUPERFAMILY SSF53187 5 205 6.56E-65 T 11-11-2016 Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 Pfam PF07687 Peptidase dimerisation domain 203 313 6.3E-16 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 23 408 1.3E-103 T 11-11-2016 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 Gene3D G3DSA:3.30.70.360 212 312 3.9E-22 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS03375 9e5fec38169db12e60293a3582403ea1 421 SUPERFAMILY SSF55031 203 310 1.57E-15 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain Gferi_RS17710 0dcf452411ccfaa72c56aae984ba49ae 251 Pfam PF14512 Putative TM nitroreductase 6 219 2.4E-49 T 11-11-2016 IPR029478 Putative nitroreductase TM1586 Gferi_RS17710 0dcf452411ccfaa72c56aae984ba49ae 251 Gene3D G3DSA:3.40.109.30 136 233 1.2E-16 T 11-11-2016 Gferi_RS17710 0dcf452411ccfaa72c56aae984ba49ae 251 SUPERFAMILY SSF55469 7 214 4.85E-22 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS17710 0dcf452411ccfaa72c56aae984ba49ae 251 Gene3D G3DSA:3.40.109.10 6 132 4.5E-27 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Gferi_RS23295 481d7ff58fc7c8b9fa2edb3f2e0d7166 68 Pfam PF11007 Spore coat associated protein JA (CotJA) 24 57 2.7E-13 T 11-11-2016 IPR020256 Spore coat protein CotJA Gferi_RS19675 17beb3d477a254706dc1ec80f9ab8b6f 176 Pfam PF03773 Predicted permease 31 172 5.2E-15 T 11-11-2016 IPR005524 Predicted permease DUF318 Gferi_RS24855 9461c7fa25193a7a5411c3a110fe51c7 427 Gene3D G3DSA:3.20.20.140 63 363 1.2E-122 T 11-11-2016 Gferi_RS24855 9461c7fa25193a7a5411c3a110fe51c7 427 Pfam PF07969 Amidohydrolase family 43 403 2.4E-54 T 11-11-2016 IPR013108 Amidohydrolase 3 Gferi_RS24855 9461c7fa25193a7a5411c3a110fe51c7 427 SUPERFAMILY SSF51338 6 77 1.39E-15 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS24855 9461c7fa25193a7a5411c3a110fe51c7 427 SUPERFAMILY SSF51556 55 375 2.72E-106 T 11-11-2016 IPR032466 Metal-dependent hydrolase Gferi_RS24855 9461c7fa25193a7a5411c3a110fe51c7 427 Gene3D G3DSA:2.30.40.10 7 62 5.7E-14 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 Gferi_RS01345 8ed4e49d3d0af9ae0da4b184367f81c4 246 SMART SM00858 44 106 0.0083 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS01345 8ed4e49d3d0af9ae0da4b184367f81c4 246 Pfam PF08666 SAF domain 45 102 6.2E-6 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS19945 e1556e4e013f1bd2e9c3ca9e896cc603 475 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 2 472 7.7E-167 T 11-11-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 Gferi_RS19945 e1556e4e013f1bd2e9c3ca9e896cc603 475 PIRSF PIRSF037567 1 475 3.9E-155 T 11-11-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 Gferi_RS02405 f19fb01303f5437ad349a65f7aa15d0a 370 Pfam PF07907 YibE/F-like protein 116 356 2.5E-86 T 11-11-2016 IPR012507 YibE/F-like Gferi_RS23400 4e59b21906f91139993d6fdebad5d4f5 141 Pfam PF12675 Protein of unknown function (DUF3795) 6 86 1.1E-13 T 11-11-2016 IPR024227 Protein of unknown function DUF3795 Gferi_RS11450 f877923f6975fbdfec1e2b36d0e98263 404 SUPERFAMILY SSF56112 96 125 2.79E-19 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS11450 f877923f6975fbdfec1e2b36d0e98263 404 SUPERFAMILY SSF56112 162 337 2.79E-19 T 11-11-2016 IPR011009 Protein kinase-like domain Gferi_RS11450 f877923f6975fbdfec1e2b36d0e98263 404 Pfam PF03109 ABC1 family 94 200 5.4E-19 T 11-11-2016 IPR004147 UbiB domain Gferi_RS11450 f877923f6975fbdfec1e2b36d0e98263 404 Gene3D G3DSA:3.90.1200.10 227 300 1.1E-5 T 11-11-2016 Gferi_RS10685 049acb3fb58ceeb5e79d030d3c9ec899 423 TIGRFAM TIGR00277 HDIG: HDIG domain 249 340 8.7E-12 T 11-11-2016 IPR006675 HDIG domain Gferi_RS10685 049acb3fb58ceeb5e79d030d3c9ec899 423 SUPERFAMILY SSF109604 232 410 1.26E-42 T 11-11-2016 Gferi_RS10685 049acb3fb58ceeb5e79d030d3c9ec899 423 Pfam PF01966 HD domain 252 372 1.3E-26 T 11-11-2016 IPR006674 HD domain Gferi_RS10685 049acb3fb58ceeb5e79d030d3c9ec899 423 Gene3D G3DSA:1.10.3210.10 234 409 2.8E-30 T 11-11-2016 IPR006674 HD domain Gferi_RS10685 049acb3fb58ceeb5e79d030d3c9ec899 423 SMART SM00471 246 381 2.9E-16 T 11-11-2016 IPR003607 HD/PDEase domain Gferi_RS09105 1191697b922472eaaf077b7fdf42d7fe 75 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 7 48 4.2E-5 T 11-11-2016 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 Gferi_RS24240 7aa9baefa9cf79dacb6400458757f395 205 Pfam PF02570 Precorrin-8X methylmutase 10 204 9.8E-82 T 11-11-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 Gferi_RS24240 7aa9baefa9cf79dacb6400458757f395 205 Gene3D G3DSA:3.40.50.10230 1 204 6.4E-86 T 11-11-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 Gferi_RS24240 7aa9baefa9cf79dacb6400458757f395 205 SUPERFAMILY SSF63965 1 204 4.45E-73 T 11-11-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 Gferi_RS08465 1e563eb06f5fff412d7b5c07b9b8a5b2 164 SUPERFAMILY SSF52016 2 159 7.06E-46 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS08465 1e563eb06f5fff412d7b5c07b9b8a5b2 164 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 4 156 9.9E-51 T 11-11-2016 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33 Gferi_RS08465 1e563eb06f5fff412d7b5c07b9b8a5b2 164 Gene3D G3DSA:3.20.19.10 2 159 1.5E-31 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Gferi_RS08465 1e563eb06f5fff412d7b5c07b9b8a5b2 164 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 2 160 31.569 T 11-11-2016 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0008152|GO:0016836 KEGG: 00290+4.2.1.33 Gferi_RS08465 1e563eb06f5fff412d7b5c07b9b8a5b2 164 Pfam PF00694 Aconitase C-terminal domain 12 105 1.1E-21 T 11-11-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 Gferi_RS15505 80453a8edd5358b7e5b2f6ce072d31c5 462 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 419 2.3E-62 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS15505 80453a8edd5358b7e5b2f6ce072d31c5 462 Pfam PF01554 MatE 23 184 9.8E-30 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS15505 80453a8edd5358b7e5b2f6ce072d31c5 462 Pfam PF01554 MatE 250 404 7.1E-23 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS15505 80453a8edd5358b7e5b2f6ce072d31c5 462 PIRSF PIRSF006603 1 450 5.7E-100 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS13145 2e035d60150e7e80ec9816b8af35f84c 213 Pfam PF04199 Putative cyclase 4 153 3.2E-32 T 11-11-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734 Gferi_RS13145 2e035d60150e7e80ec9816b8af35f84c 213 Gene3D G3DSA:3.50.30.50 1 210 1.1E-70 T 11-11-2016 Gferi_RS13145 2e035d60150e7e80ec9816b8af35f84c 213 SUPERFAMILY SSF102198 1 210 4.19E-65 T 11-11-2016 Gferi_RS13850 606c027b18c8d11957a6527f281d6896 184 SUPERFAMILY SSF160379 1 177 4.58E-44 T 11-11-2016 Gferi_RS13850 606c027b18c8d11957a6527f281d6896 184 PIRSF PIRSF008502 1 179 5.1E-43 T 11-11-2016 IPR012545 Protein of unknown function DUF1697 Gferi_RS13850 606c027b18c8d11957a6527f281d6896 184 Gene3D G3DSA:3.30.70.1280 1 85 1.2E-25 T 11-11-2016 Gferi_RS13850 606c027b18c8d11957a6527f281d6896 184 Gene3D G3DSA:3.30.70.1260 89 177 1.1E-19 T 11-11-2016 Gferi_RS13850 606c027b18c8d11957a6527f281d6896 184 Pfam PF08002 Protein of unknown function (DUF1697) 2 135 1.1E-32 T 11-11-2016 IPR012545 Protein of unknown function DUF1697 Gferi_RS23290 6fd3ed5a435e9765c90474850fa67d96 240 PIRSF PIRSF016933 1 229 8.8E-74 T 11-11-2016 IPR023596 Peptidase PrsW, archaeal/bacterial GO:0008233 Gferi_RS23290 6fd3ed5a435e9765c90474850fa67d96 240 Pfam PF13367 Protease prsW family 28 206 1.2E-39 T 11-11-2016 IPR026898 Protease PrsW GO:0008233 Gferi_RS22045 d7709da360c43be5a1e1d5aa6c3c21b4 305 Pfam PF14045 YIEGIA protein 16 297 3.6E-101 T 11-11-2016 IPR025918 YIEGIA protein Gferi_RS22045 d7709da360c43be5a1e1d5aa6c3c21b4 305 ProDom PD128584 YPHB BH1976 TRANSMEMBRANE MEMBRANE SEAA 16 293 6.0E-123 T 11-11-2016 Gferi_RS19785 28bb10b2b24dd556cf4f3e99b7527f09 73 PIRSF PIRSF037246 1 73 1.8E-35 T 11-11-2016 IPR017154 Uncharacterised conserved protein UCP037246 Gferi_RS19785 28bb10b2b24dd556cf4f3e99b7527f09 73 Pfam PF02229 Transcriptional Coactivator p15 (PC4) 19 67 5.0E-11 T 11-11-2016 IPR003173 Transcriptional coactivator p15 (PC4) GO:0003677|GO:0003713|GO:0006355 Gferi_RS14700 7e8aa96f49ad63d2e8b369262cff6362 161 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 22 152 3.9E-29 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS08905 d78f19693650536ca784b936054a4b13 80 SUPERFAMILY SSF55021 2 78 4.43E-17 T 11-11-2016 Gferi_RS08905 d78f19693650536ca784b936054a4b13 80 Pfam PF08753 NikR C terminal nickel binding domain 7 74 2.5E-4 T 11-11-2016 IPR014864 Transcription factor, NikR, nickel binding C-terminal Gferi_RS08905 d78f19693650536ca784b936054a4b13 80 Gene3D G3DSA:3.30.70.1150 2 79 6.0E-16 T 11-11-2016 Gferi_RS23900 7068563e33063e4a402eefb77146d528 338 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 168 277 3.2E-9 T 11-11-2016 IPR024534 Domain of unknown function DUF2220 Gferi_RS24765 ba1e0aad0f17aba7497b4e26ca650514 142 SUPERFAMILY SSF50475 11 131 2.81E-26 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS24765 ba1e0aad0f17aba7497b4e26ca650514 142 Gene3D G3DSA:2.30.110.10 12 139 4.5E-38 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS24765 ba1e0aad0f17aba7497b4e26ca650514 142 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 12 129 2.4E-18 T 11-11-2016 Gferi_RS12600 bf08e7d37191765e2df6834f63fc39c9 406 SUPERFAMILY SSF53649 1 100 1.01E-53 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS12600 bf08e7d37191765e2df6834f63fc39c9 406 SUPERFAMILY SSF53649 230 400 1.01E-53 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS12600 bf08e7d37191765e2df6834f63fc39c9 406 Pfam PF01676 Metalloenzyme superfamily 3 387 1.9E-30 T 11-11-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Gferi_RS12600 bf08e7d37191765e2df6834f63fc39c9 406 Gene3D G3DSA:3.40.720.10 1 100 2.7E-56 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS12600 bf08e7d37191765e2df6834f63fc39c9 406 Gene3D G3DSA:3.40.720.10 233 401 2.7E-56 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS12600 bf08e7d37191765e2df6834f63fc39c9 406 PIRSF PIRSF001491 1 401 1.9E-111 T 11-11-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 Gferi_RS07450 b625deca8151ae1dda295be7dce67ed5 356 Pfam PF01924 Hydrogenase formation hypA family 7 353 1.7E-135 T 11-11-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 Gferi_RS07450 b625deca8151ae1dda295be7dce67ed5 356 PIRSF PIRSF005622 1 356 2.7E-132 T 11-11-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 Gferi_RS07450 b625deca8151ae1dda295be7dce67ed5 356 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 6 354 1.9E-123 T 11-11-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 Gferi_RS05525 702e7155080671bc6f7499d949ad603f 181 SUPERFAMILY SSF51161 7 147 1.8E-43 T 11-11-2016 IPR011004 Trimeric LpxA-like Gferi_RS05525 702e7155080671bc6f7499d949ad603f 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 121 1.0E-9 T 11-11-2016 IPR001451 Hexapeptide repeat Gferi_RS05525 702e7155080671bc6f7499d949ad603f 181 Gene3D G3DSA:2.160.10.10 9 147 3.2E-40 T 11-11-2016 Gferi_RS09360 287c9df0ce62967f41effe6235994587 120 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 14 111 4.7E-18 T 11-11-2016 IPR018745 Domain of unknown function DUF2294 Gferi_RS04420 c157fca1a8aa7cb8d5e32425b272db56 428 Gene3D G3DSA:2.60.40.1630 89 185 6.8E-7 T 11-11-2016 Gferi_RS04420 c157fca1a8aa7cb8d5e32425b272db56 428 Pfam PF13786 Domain of unknown function (DUF4179) 35 122 1.8E-9 T 11-11-2016 IPR025436 Domain of unknown function DUF4179 Gferi_RS03290 fb7186550ab2cfa6e3cdf77b54a2500f 455 Gene3D G3DSA:3.20.20.210 3 384 8.6E-15 T 11-11-2016 Gferi_RS03290 fb7186550ab2cfa6e3cdf77b54a2500f 455 SUPERFAMILY SSF51726 142 385 1.12E-29 T 11-11-2016 Gferi_RS03290 fb7186550ab2cfa6e3cdf77b54a2500f 455 SUPERFAMILY SSF51726 8 93 1.12E-29 T 11-11-2016 Gferi_RS13520 56a01522d224945c03339d6d79b7b3cd 256 SUPERFAMILY SSF88713 3 253 2.08E-101 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS13520 56a01522d224945c03339d6d79b7b3cd 256 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 47.625 T 11-11-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF Gferi_RS13520 56a01522d224945c03339d6d79b7b3cd 256 Pfam PF03746 LamB/YcsF family 4 242 5.1E-103 T 11-11-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF Gferi_RS03675 6ed2d438b441f35ae25359b5eeacd869 67 Pfam PF14203 Putative tranposon-transfer assisting protein 3 63 3.5E-20 T 11-11-2016 IPR025468 Putative tranposon-transfer assisting protein Gferi_RS04255 888e1b04762635c3f545bc11187b6c31 428 Pfam PF03313 Serine dehydratase alpha chain 171 421 1.9E-48 T 11-11-2016 IPR005130 Serine dehydratase-like, alpha subunit Gferi_RS04255 888e1b04762635c3f545bc11187b6c31 428 PIRSF PIRSF006054 1 428 7.9E-146 T 11-11-2016 IPR021144 Uncharacterised protein family UPF0597 Gferi_RS04255 888e1b04762635c3f545bc11187b6c31 428 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 3 426 35.471 T 11-11-2016 IPR021144 Uncharacterised protein family UPF0597 Gferi_RS21465 c016991b6e29440e1561bea092bd2369 127 SUPERFAMILY SSF53597 2 126 2.5E-8 T 11-11-2016 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Gferi_RS21465 c016991b6e29440e1561bea092bd2369 127 Gene3D G3DSA:3.40.430.10 2 126 9.8E-5 T 11-11-2016 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 Gferi_RS12020 52acce8550c4cc3be8a1f466206058a8 520 Pfam PF03806 AbgT putative transporter family 18 517 4.1E-203 T 11-11-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 Gferi_RS11075 d11afb3b5186e9ac041930b4c9108aae 116 Pfam PF12986 Domain of unknown function (DUF3870) 14 106 2.1E-23 T 11-11-2016 IPR024617 Domain of unknown function DUF3870 Gferi_RS10855 30fe16676c566a24ff906293f85091a3 155 Pfam PF06695 Putative small multi-drug export protein 24 144 2.0E-41 T 11-11-2016 IPR009577 Putative small multi-drug export Gferi_RS06255 3c412fa0502680569e6339d9d315dff9 426 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 2 423 7.1E-176 T 11-11-2016 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 Gferi_RS25675 383ce2448d4e149a85357a096ff91aed 393 Gene3D G3DSA:3.40.1160.10 2 249 7.3E-59 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS25675 383ce2448d4e149a85357a096ff91aed 393 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 69 272 5.8E-67 T 11-11-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS25675 383ce2448d4e149a85357a096ff91aed 393 Pfam PF00696 Amino acid kinase family 3 235 1.3E-50 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS25675 383ce2448d4e149a85357a096ff91aed 393 SUPERFAMILY SSF53633 4 247 2.09E-65 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase Gferi_RS25675 383ce2448d4e149a85357a096ff91aed 393 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 11-11-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 Gferi_RS23185 3881027425c9d28725bbb8dcd701d96f 135 Gene3D G3DSA:3.40.50.620 5 102 8.1E-10 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS23185 3881027425c9d28725bbb8dcd701d96f 135 Pfam PF00582 Universal stress protein family 5 102 8.6E-9 T 11-11-2016 IPR006016 UspA GO:0006950 Gferi_RS23185 3881027425c9d28725bbb8dcd701d96f 135 SUPERFAMILY SSF52402 5 101 1.44E-10 T 11-11-2016 Gferi_RS08025 0c45fef2509281c3e621bcee3aa7bf7b 876 Gene3D G3DSA:3.50.30.10 767 870 6.3E-26 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS08025 0c45fef2509281c3e621bcee3aa7bf7b 876 Gene3D G3DSA:3.30.1490.20 1 185 5.1E-62 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 Gferi_RS08025 0c45fef2509281c3e621bcee3aa7bf7b 876 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 18 315 4.5E-91 T 11-11-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Gferi_RS08025 0c45fef2509281c3e621bcee3aa7bf7b 876 SUPERFAMILY SSF56059 1 319 1.18E-93 T 11-11-2016 Gferi_RS08025 0c45fef2509281c3e621bcee3aa7bf7b 876 Gene3D G3DSA:3.30.470.20 187 326 3.0E-41 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 Gferi_RS08025 0c45fef2509281c3e621bcee3aa7bf7b 876 SUPERFAMILY SSF52009 766 871 3.14E-27 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS08025 0c45fef2509281c3e621bcee3aa7bf7b 876 Pfam PF00391 PEP-utilising enzyme, mobile domain 796 868 1.4E-20 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Gferi_RS05495 9062d3c4e31238363428b46d3e3233dd 368 Pfam PF03845 Spore germination protein 6 314 4.4E-46 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS05495 9062d3c4e31238363428b46d3e3233dd 368 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 5 356 9.1E-75 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS16920 38e4e96699c0e6f8e82215f5261127bc 174 Pfam PF12822 Protein of unknown function (DUF3816) 14 165 1.7E-20 T 11-11-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 Gferi_RS00725 37bc34ec8a1d10e3c83d514fc59c826d 111 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 6 93 4.9E-13 T 11-11-2016 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 Gferi_RS00725 37bc34ec8a1d10e3c83d514fc59c826d 111 SUPERFAMILY SSF55315 3 98 1.38E-23 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS00725 37bc34ec8a1d10e3c83d514fc59c826d 111 Gene3D G3DSA:3.30.1330.30 2 96 6.2E-20 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like Gferi_RS20030 10bfe72b1ffbb7e0c901c2d24151a829 279 Gene3D G3DSA:3.40.50.300 2 252 2.7E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS20030 10bfe72b1ffbb7e0c901c2d24151a829 279 Pfam PF00005 ABC transporter 21 178 6.8E-26 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS20030 10bfe72b1ffbb7e0c901c2d24151a829 279 SMART SM00382 30 228 3.1E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS20030 10bfe72b1ffbb7e0c901c2d24151a829 279 SUPERFAMILY SSF52540 3 250 4.13E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08030 eee6fcbe82cb4b21bcc916020812664c 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.1E-13 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08030 eee6fcbe82cb4b21bcc916020812664c 193 Gene3D G3DSA:1.10.357.10 5 190 9.0E-26 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS08030 eee6fcbe82cb4b21bcc916020812664c 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.7E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08030 eee6fcbe82cb4b21bcc916020812664c 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.7E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS08030 eee6fcbe82cb4b21bcc916020812664c 193 SUPERFAMILY SSF46689 5 86 3.39E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS07835 71b107f3c5154eaee28b0c9a7bc72fbb 157 Pfam PF13751 Transposase DDE domain 18 126 1.1E-21 T 11-11-2016 IPR025668 Transposase DDE domain Gferi_RS03690 6fc487b29ba7e2858d648da21467c6ca 838 Pfam PF14191 YodL-like 575 674 1.7E-31 T 11-11-2016 IPR025923 YodL-like Gferi_RS08975 155826fbe2e8db3daf428afa3219fb57 96 Pfam PF03334 Na+/H+ antiporter subunit 6 85 2.6E-17 T 11-11-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 Gferi_RS18435 76457c4b5fd4a048421376b9e75c5ed1 364 SUPERFAMILY SSF51735 137 263 2.7E-14 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18435 76457c4b5fd4a048421376b9e75c5ed1 364 Gene3D G3DSA:3.40.50.720 130 261 1.2E-14 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS18435 76457c4b5fd4a048421376b9e75c5ed1 364 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 143 257 1.3E-9 T 11-11-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 PRINTS PR00173 Glutamate-aspartate symporter signature 285 311 1.1E-12 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 PRINTS PR00173 Glutamate-aspartate symporter signature 218 237 1.1E-12 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 1.1E-12 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 PRINTS PR00173 Glutamate-aspartate symporter signature 320 339 1.1E-12 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 PRINTS PR00173 Glutamate-aspartate symporter signature 183 202 1.1E-12 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 Pfam PF00375 Sodium:dicarboxylate symporter family 13 394 1.1E-65 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 SUPERFAMILY SSF118215 13 394 8.37E-96 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 Gene3D G3DSA:1.10.3860.10 4 395 2.9E-86 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Gferi_RS05185 bdf88c9ccaabdcf4e139df08d9e31d88 410 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 402 36.377 T 11-11-2016 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 Gferi_RS16545 e1f7cc0e452830667526670f775d7119 63 Pfam PF13451 Probable zinc-ribbon domain 3 48 2.3E-23 T 11-11-2016 IPR025306 Probable zinc-binding domain Gferi_RS21155 68d3973763bdc7c4fcdd1397ce4021e4 451 Gene3D G3DSA:3.90.550.10 102 333 1.8E-34 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS21155 68d3973763bdc7c4fcdd1397ce4021e4 451 SUPERFAMILY SSF53448 89 377 8.19E-51 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS21155 68d3973763bdc7c4fcdd1397ce4021e4 451 Pfam PF13641 Glycosyltransferase like family 2 102 326 1.2E-29 T 11-11-2016 Gferi_RS06810 e35ce89c4f13592580138fab6fc756ae 548 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 75 523 1.7E-137 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS06810 e35ce89c4f13592580138fab6fc756ae 548 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 36 522 1.0E-170 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS08965 ef28183b4b1270afdd0d24bee74c8257 164 PIRSF PIRSF019239 1 164 7.5E-29 T 11-11-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Gferi_RS08965 ef28183b4b1270afdd0d24bee74c8257 164 Pfam PF01899 Na+/H+ ion antiporter subunit 12 160 8.8E-29 T 11-11-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Gferi_RS08450 fbf718fad42cdf9a2686435bcaa528cd 575 SUPERFAMILY SSF53187 14 59 6.01E-39 T 11-11-2016 Gferi_RS08450 fbf718fad42cdf9a2686435bcaa528cd 575 SUPERFAMILY SSF53187 209 432 6.01E-39 T 11-11-2016 Gferi_RS08450 fbf718fad42cdf9a2686435bcaa528cd 575 Pfam PF04389 Peptidase family M28 227 417 5.9E-18 T 11-11-2016 IPR007484 Peptidase M28 Gferi_RS08450 fbf718fad42cdf9a2686435bcaa528cd 575 Gene3D G3DSA:3.40.630.10 14 70 7.9E-42 T 11-11-2016 Gferi_RS08450 fbf718fad42cdf9a2686435bcaa528cd 575 Gene3D G3DSA:3.40.630.10 224 435 7.9E-42 T 11-11-2016 Gferi_RS18955 edf0970118fcfa665e48d9d54693fdff 458 Pfam PF00474 Sodium:solute symporter family 30 414 1.7E-19 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS12810 50333638a6161ea3222bc8b45ae3847a 160 SUPERFAMILY SSF52317 27 126 3.14E-7 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS12810 50333638a6161ea3222bc8b45ae3847a 160 Gene3D G3DSA:3.40.50.880 34 120 2.4E-9 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS10745 cffd0dd934be1bb52154321dac5925f4 292 Pfam PF00551 Formyl transferase 84 140 4.0E-13 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS10745 cffd0dd934be1bb52154321dac5925f4 292 Gene3D G3DSA:3.40.50.170 87 196 5.0E-19 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS10745 cffd0dd934be1bb52154321dac5925f4 292 Gene3D G3DSA:3.10.25.10 197 273 8.0E-9 T 11-11-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS10745 cffd0dd934be1bb52154321dac5925f4 292 SUPERFAMILY SSF53328 12 191 3.92E-25 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS10745 cffd0dd934be1bb52154321dac5925f4 292 SUPERFAMILY SSF50486 193 276 1.14E-11 T 11-11-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 Gferi_RS10745 cffd0dd934be1bb52154321dac5925f4 292 Pfam PF02911 Formyl transferase, C-terminal domain 193 275 2.9E-9 T 11-11-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Gferi_RS16275 613c8c22c04c70a42a992256cceba968 254 SUPERFAMILY SSF52172 7 125 9.39E-33 T 11-11-2016 IPR011006 CheY-like superfamily Gferi_RS16275 613c8c22c04c70a42a992256cceba968 254 Pfam PF00072 Response regulator receiver domain 11 119 3.2E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS16275 613c8c22c04c70a42a992256cceba968 254 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 146 234 9.9E-14 T 11-11-2016 IPR018745 Domain of unknown function DUF2294 Gferi_RS16275 613c8c22c04c70a42a992256cceba968 254 Gene3D G3DSA:3.40.50.2300 7 124 9.0E-33 T 11-11-2016 Gferi_RS16275 613c8c22c04c70a42a992256cceba968 254 SMART SM00448 9 119 6.4E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Gferi_RS14785 e39896954f41e91e7bfe982564757ef3 160 Pfam PF12724 Flavodoxin domain 4 140 2.3E-29 T 11-11-2016 IPR026816 Flavodoxin domain Gferi_RS14785 e39896954f41e91e7bfe982564757ef3 160 SUPERFAMILY SSF52218 1 154 3.42E-20 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS14785 e39896954f41e91e7bfe982564757ef3 160 Gene3D G3DSA:3.40.50.360 3 156 1.9E-16 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS05865 d21e558350eb85d44dc4c492e77ccb8d 123 Pfam PF09579 Sporulation protein YtfJ (Spore_YtfJ) 32 108 1.2E-20 T 11-11-2016 IPR014229 Sporulation protein YtfJ Gferi_RS05865 d21e558350eb85d44dc4c492e77ccb8d 123 PIRSF PIRSF021377 2 122 2.2E-17 T 11-11-2016 IPR014229 Sporulation protein YtfJ Gferi_RS06640 c82576220585c45b2e13396bcf698bfe 435 SUPERFAMILY SSF103473 12 416 1.18E-43 T 11-11-2016 IPR020846 Major facilitator superfamily domain Gferi_RS06640 c82576220585c45b2e13396bcf698bfe 435 Gene3D G3DSA:1.20.1250.20 10 198 4.8E-20 T 11-11-2016 Gferi_RS06640 c82576220585c45b2e13396bcf698bfe 435 Gene3D G3DSA:1.20.1250.20 224 415 9.5E-11 T 11-11-2016 Gferi_RS06640 c82576220585c45b2e13396bcf698bfe 435 Pfam PF07690 Major Facilitator Superfamily 15 359 7.3E-30 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Gferi_RS01865 9e0fabe9eccda7ab9dee3edc80d4f29f 67 ProDom PD128584 YPHB BH1976 TRANSMEMBRANE MEMBRANE SEAA 1 61 2.0E-15 T 11-11-2016 Gferi_RS01865 9e0fabe9eccda7ab9dee3edc80d4f29f 67 Pfam PF14045 YIEGIA protein 8 59 4.0E-21 T 11-11-2016 IPR025918 YIEGIA protein Gferi_RS10055 4011cb22d4e25c98ec30cd91e9b0d55c 167 TIGRFAM TIGR02359 thiW: energy coupling factor transporter S component ThiW 3 158 4.1E-51 T 11-11-2016 IPR012652 Energy coupling factor transporter S component ThiW Gferi_RS10055 4011cb22d4e25c98ec30cd91e9b0d55c 167 Pfam PF09512 Thiamine-precursor transporter protein (ThiW) 6 154 5.7E-54 T 11-11-2016 IPR012652 Energy coupling factor transporter S component ThiW Gferi_RS10055 4011cb22d4e25c98ec30cd91e9b0d55c 167 PIRSF PIRSF024534 1 163 6.8E-55 T 11-11-2016 IPR012652 Energy coupling factor transporter S component ThiW Gferi_RS19110 816235bb83d8d78ed67f12342697a6b6 277 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 11 277 2.9E-84 T 11-11-2016 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 Gferi_RS25105 ac62830d05bc957c6ba82832abc27edb 202 Gene3D G3DSA:3.40.50.360 2 201 8.9E-63 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS25105 ac62830d05bc957c6ba82832abc27edb 202 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 4 178 3.4E-43 T 11-11-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 Gferi_RS25105 ac62830d05bc957c6ba82832abc27edb 202 SUPERFAMILY SSF52218 5 195 4.06E-45 T 11-11-2016 IPR029039 Flavoprotein-like domain Gferi_RS25105 ac62830d05bc957c6ba82832abc27edb 202 Pfam PF03358 NADPH-dependent FMN reductase 5 149 5.4E-19 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 Gferi_RS24635 b8818cbb1ec93b5fc5104ee53404e2dc 390 Pfam PF01976 Protein of unknown function DUF116 222 378 1.6E-26 T 11-11-2016 IPR002829 Protein of unknown function DUF116 Gferi_RS11895 01b9b9287bdf9f8768247fcc07a0edf5 285 Gene3D G3DSA:1.10.530.10 150 279 2.9E-23 T 11-11-2016 Gferi_RS11895 01b9b9287bdf9f8768247fcc07a0edf5 285 SUPERFAMILY SSF53955 150 265 2.1E-24 T 11-11-2016 IPR023346 Lysozyme-like domain Gferi_RS11895 01b9b9287bdf9f8768247fcc07a0edf5 285 Pfam PF01464 Transglycosylase SLT domain 151 267 3.8E-19 T 11-11-2016 IPR008258 Transglycosylase SLT domain 1 Gferi_RS16630 ad0c68ce9271541b0df3db1d389d42ef 176 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 3 163 5.0E-42 T 11-11-2016 Gferi_RS16630 ad0c68ce9271541b0df3db1d389d42ef 176 Pfam PF17099 Tryptophan transporter TrpP 4 163 3.9E-45 T 11-11-2016 IPR031360 Tryptophan transporter TrpP Gferi_RS06090 81594191a2ca384848a0f2b47d468dec 293 Gene3D G3DSA:3.40.50.620 3 240 3.1E-52 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS06090 81594191a2ca384848a0f2b47d468dec 293 SUPERFAMILY SSF52402 2 226 6.02E-54 T 11-11-2016 Gferi_RS06090 81594191a2ca384848a0f2b47d468dec 293 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 27 245 5.9E-41 T 11-11-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 Gferi_RS24425 d013aa3a0e87b8d8e656e53ec4482d6d 396 Gene3D G3DSA:3.40.718.10 30 297 4.0E-34 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Gferi_RS24425 d013aa3a0e87b8d8e656e53ec4482d6d 396 SUPERFAMILY SSF53659 31 296 1.49E-26 T 11-11-2016 Gferi_RS24425 d013aa3a0e87b8d8e656e53ec4482d6d 396 Pfam PF02504 Fatty acid synthesis protein 31 370 1.1E-79 T 11-11-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 Gferi_RS24425 d013aa3a0e87b8d8e656e53ec4482d6d 396 PIRSF PIRSF036593 5 390 5.4E-201 T 11-11-2016 IPR012116 Glycine/sarcosine/betaine reductase complex, protein C, alpha subunit Gferi_RS06610 d784d9c2ed2e5306bfc52882199e611b 121 Pfam PF13788 Domain of unknown function (DUF4180) 9 117 4.6E-44 T 11-11-2016 IPR025438 Domain of unknown function DUF4180 Gferi_RS14195 8f671257c515e330f772889593a7ce36 478 SUPERFAMILY SSF52540 5 228 5.01E-30 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14195 8f671257c515e330f772889593a7ce36 478 Gene3D G3DSA:3.40.50.300 3 237 1.0E-33 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14195 8f671257c515e330f772889593a7ce36 478 Gene3D G3DSA:3.40.50.300 263 476 3.7E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14195 8f671257c515e330f772889593a7ce36 478 Pfam PF00005 ABC transporter 21 167 2.2E-11 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS14195 8f671257c515e330f772889593a7ce36 478 SUPERFAMILY SSF52540 264 475 8.91E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21335 1a000046dc091055ca155b85f9c13be7 253 SMART SM00382 30 219 1.1E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS21335 1a000046dc091055ca155b85f9c13be7 253 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS21335 1a000046dc091055ca155b85f9c13be7 253 Pfam PF00005 ABC transporter 21 162 1.4E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS21335 1a000046dc091055ca155b85f9c13be7 253 Gene3D G3DSA:3.40.50.300 2 223 5.1E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS21335 1a000046dc091055ca155b85f9c13be7 253 SUPERFAMILY SSF52540 3 226 1.17E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS08700 0e96eca36c7b00cf860c367d1434263f 372 Pfam PF04443 Acyl-protein synthetase, LuxE 20 367 5.5E-43 T 11-11-2016 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723 Gferi_RS24420 9ad8d3d0b55061563ef024ac2737cfb5 513 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 255 333 1.3E-8 T 11-11-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Gferi_RS24420 9ad8d3d0b55061563ef024ac2737cfb5 513 Gene3D G3DSA:3.40.47.10 185 293 1.3E-22 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS24420 9ad8d3d0b55061563ef024ac2737cfb5 513 SUPERFAMILY SSF53901 184 291 7.02E-14 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 Gferi_RS24420 9ad8d3d0b55061563ef024ac2737cfb5 513 PIRSF PIRSF037559 1 513 3.7E-281 T 11-11-2016 IPR017236 Glycine/sarcosine/betaine reductase, component C, beta Gferi_RS08240 ff1c4a674607deaf61630fd609ec46ad 78 Pfam PF00550 Phosphopantetheine attachment site 8 56 7.3E-5 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS08240 ff1c4a674607deaf61630fd609ec46ad 78 Gene3D G3DSA:1.10.1200.10 3 76 1.0E-11 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS08240 ff1c4a674607deaf61630fd609ec46ad 78 SUPERFAMILY SSF47336 3 76 4.06E-10 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain Gferi_RS23595 bc897e821cf4f0df70e98cbfcb9907ab 399 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 7 396 7.6E-117 T 11-11-2016 IPR006444 Phage major capsid protein, HK97 Gferi_RS23595 bc897e821cf4f0df70e98cbfcb9907ab 399 SUPERFAMILY SSF56563 116 399 1.57E-87 T 11-11-2016 Gferi_RS23595 bc897e821cf4f0df70e98cbfcb9907ab 399 Pfam PF05065 Phage capsid family 124 396 3.6E-86 T 11-11-2016 IPR024455 Phage capsid Gferi_RS21390 9dbc4911313badd34e0eb362d48c3e14 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 1.6E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21390 9dbc4911313badd34e0eb362d48c3e14 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 1.6E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21390 9dbc4911313badd34e0eb362d48c3e14 210 SUPERFAMILY SSF46689 19 90 1.6E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21390 9dbc4911313badd34e0eb362d48c3e14 210 Gene3D G3DSA:1.10.10.60 19 69 7.7E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS21390 9dbc4911313badd34e0eb362d48c3e14 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 71 1.7E-12 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS21390 9dbc4911313badd34e0eb362d48c3e14 210 Gene3D G3DSA:1.10.357.10 70 209 8.8E-15 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS09760 af0e18bef5e16615b03bd4be74643a0a 297 Gene3D G3DSA:3.40.1190.20 3 285 1.4E-57 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS09760 af0e18bef5e16615b03bd4be74643a0a 297 SUPERFAMILY SSF53613 3 281 6.39E-46 T 11-11-2016 IPR029056 Ribokinase-like Gferi_RS09760 af0e18bef5e16615b03bd4be74643a0a 297 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 223 236 - T 11-11-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Gferi_RS09760 af0e18bef5e16615b03bd4be74643a0a 297 Pfam PF00294 pfkB family carbohydrate kinase 15 281 1.6E-30 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB Gferi_RS07210 b763ddfc35fd13dd36d6b8e88dee5d98 281 Pfam PF02645 Uncharacterised protein, DegV family COG1307 4 280 1.4E-78 T 11-11-2016 IPR003797 DegV Gferi_RS07210 b763ddfc35fd13dd36d6b8e88dee5d98 281 SUPERFAMILY SSF82549 3 281 1.73E-75 T 11-11-2016 Gferi_RS07210 b763ddfc35fd13dd36d6b8e88dee5d98 281 Gene3D G3DSA:3.30.1180.10 154 281 3.5E-36 T 11-11-2016 Gferi_RS07210 b763ddfc35fd13dd36d6b8e88dee5d98 281 Gene3D G3DSA:3.40.50.10170 3 151 5.8E-45 T 11-11-2016 Gferi_RS07210 b763ddfc35fd13dd36d6b8e88dee5d98 281 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 4 279 1.8E-85 T 11-11-2016 IPR003797 DegV Gferi_RS11785 7b63680d508d9cbefe2fee21d404b2c1 251 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS11785 7b63680d508d9cbefe2fee21d404b2c1 251 Pfam PF00005 ABC transporter 20 168 2.6E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS11785 7b63680d508d9cbefe2fee21d404b2c1 251 SMART SM00382 29 234 1.6E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS11785 7b63680d508d9cbefe2fee21d404b2c1 251 Gene3D G3DSA:3.40.50.300 2 224 9.8E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11785 7b63680d508d9cbefe2fee21d404b2c1 251 SUPERFAMILY SSF52540 3 225 1.28E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS12410 5fd5a6dc8f65585ca77646e0ce5a63e3 270 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 5 270 3.8E-91 T 11-11-2016 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 Gferi_RS11315 2835235e0f923c1b27deb9f93621673b 472 Pfam PF14296 O-antigen polysaccharide polymerase Wzy 15 461 1.8E-34 T 11-11-2016 IPR029468 O-antigen polysaccharide polymerase Wzy Gferi_RS11315 2835235e0f923c1b27deb9f93621673b 472 TIGRFAM TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase 53 460 3.6E-17 T 11-11-2016 Gferi_RS25780 b6202001ce16eae877d1018da3bdbd8c 346 Pfam PF04245 37-kD nucleoid-associated bacterial protein 13 341 1.5E-58 T 11-11-2016 IPR007358 Nucleoid-associated protein NdpA GO:0009295 Gferi_RS17970 ca45264b15fe8530ac8a7077edb68200 257 Gene3D G3DSA:3.90.850.10 3 256 3.4E-86 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS17970 ca45264b15fe8530ac8a7077edb68200 257 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 98 254 1.0E-12 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS17970 ca45264b15fe8530ac8a7077edb68200 257 SUPERFAMILY SSF56529 4 256 1.83E-76 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 Gferi_RS11750 dce5fb0a278ea7adf831231ec70b1703 147 Gene3D G3DSA:1.10.10.10 11 90 8.7E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS11750 dce5fb0a278ea7adf831231ec70b1703 147 Pfam PF01475 Ferric uptake regulator family 19 137 2.2E-30 T 11-11-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Gferi_RS11750 dce5fb0a278ea7adf831231ec70b1703 147 SUPERFAMILY SSF46785 11 141 2.04E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23945 38c82484170e9f8c85bb9c1321d1ce88 110 Gene3D G3DSA:2.60.120.10 20 88 2.4E-14 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS23945 38c82484170e9f8c85bb9c1321d1ce88 110 SUPERFAMILY SSF51182 25 89 4.07E-13 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS23945 38c82484170e9f8c85bb9c1321d1ce88 110 Pfam PF07883 Cupin domain 40 87 3.1E-10 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS24395 6cd1789619cdc17fbd250decde9d363f 428 PIRSF PIRSF011588 1 428 5.1E-222 T 11-11-2016 IPR016585 Glycine/sarcosine/betaine reductase, component B, fused alpha/beta GO:0050485|GO:0055114 Gferi_RS24395 6cd1789619cdc17fbd250decde9d363f 428 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 2 425 7.2E-216 T 11-11-2016 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 Gferi_RS24105 a868e2b1fb0a790ae49d3c7eb74469c6 246 Pfam PF02535 ZIP Zinc transporter 102 240 3.1E-23 T 11-11-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Gferi_RS13795 6a30c4d4f4e7998a60863b712c51b8ef 268 Gene3D G3DSA:3.60.15.10 4 236 2.5E-34 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS13795 6a30c4d4f4e7998a60863b712c51b8ef 268 SMART SM00849 13 191 1.1E-7 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS13795 6a30c4d4f4e7998a60863b712c51b8ef 268 SUPERFAMILY SSF56281 1 227 6.09E-42 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS13795 6a30c4d4f4e7998a60863b712c51b8ef 268 Pfam PF12706 Beta-lactamase superfamily domain 42 206 1.8E-19 T 11-11-2016 IPR001279 Metallo-beta-lactamase Gferi_RS04490 7ebe7ce28ddd7b9cefb7816fa124298b 355 Pfam PF02378 Phosphotransferase system, EIIC 17 266 1.5E-12 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Gferi_RS04490 7ebe7ce28ddd7b9cefb7816fa124298b 355 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 4 332 1.1E-85 T 11-11-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 Gene3D G3DSA:1.10.3210.10 174 284 9.9E-7 T 11-11-2016 IPR006674 HD domain Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 Gene3D G3DSA:3.40.50.620 921 1050 1.3E-28 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 Gene3D G3DSA:3.40.50.620 1082 1121 1.3E-28 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 SUPERFAMILY SSF52374 921 1120 1.32E-23 T 11-11-2016 Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 SUPERFAMILY SSF109604 161 283 8.79E-12 T 11-11-2016 Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 Gene3D G3DSA:1.25.10.10 394 472 8.7E-8 T 11-11-2016 IPR011989 Armadillo-like helical Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 Gene3D G3DSA:1.25.10.10 527 608 8.7E-8 T 11-11-2016 IPR011989 Armadillo-like helical Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 Gene3D G3DSA:1.25.10.10 677 853 8.7E-8 T 11-11-2016 IPR011989 Armadillo-like helical Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 SUPERFAMILY SSF48371 715 852 5.04E-13 T 11-11-2016 IPR016024 Armadillo-type fold GO:0005488 Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 SUPERFAMILY SSF48371 399 618 5.04E-13 T 11-11-2016 IPR016024 Armadillo-type fold GO:0005488 Gferi_RS06520 81b90810132bb4b386ceb20999cfeef6 1635 Pfam PF01467 Cytidylyltransferase-like 925 1089 3.6E-8 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Gferi_RS10575 270d01dd34aa8d658475a262a2c7c219 382 Pfam PF04519 Polymer-forming cytoskeletal 28 94 1.6E-6 T 11-11-2016 IPR007607 Protein of unknown function DUF583 Gferi_RS06280 1f575062c4ba94ef5cb17ecac85e8a7a 138 Pfam PF12953 Domain of unknown function (DUF3842) 3 129 5.7E-49 T 11-11-2016 IPR024208 Protein of unknown function DUF3842 Gferi_RS20420 b904cffb8da0d497ff5ae47729bfa617 285 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 271 5.2E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20420 b904cffb8da0d497ff5ae47729bfa617 285 Gene3D G3DSA:1.10.3720.10 15 281 2.8E-43 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20420 b904cffb8da0d497ff5ae47729bfa617 285 SUPERFAMILY SSF161098 14 271 1.03E-39 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20420 b904cffb8da0d497ff5ae47729bfa617 285 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 15 277 1.4E-89 T 11-11-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Gferi_RS01085 6112e9a93506c96aff20a5f651047fd2 222 Gene3D G3DSA:3.90.350.10 43 129 3.1E-5 T 11-11-2016 IPR014736 Transposase, Tn5-like, core Gferi_RS01085 6112e9a93506c96aff20a5f651047fd2 222 Pfam PF13701 Transposase DDE domain group 1 3 207 3.9E-17 T 11-11-2016 IPR025668 Transposase DDE domain Gferi_RS01085 6112e9a93506c96aff20a5f651047fd2 222 SUPERFAMILY SSF53098 8 153 3.34E-14 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS09385 a31b20de874f688c99c27d24a6623518 246 Pfam PF12705 PD-(D/E)XK nuclease superfamily 84 243 6.6E-20 T 11-11-2016 Gferi_RS21315 22aa3e51f1f1771a07265cf9f3955b48 135 PIRSF PIRSF021328 1 135 2.5E-48 T 11-11-2016 IPR016787 Uncharacterised conserved protein UCP021328 Gferi_RS21315 22aa3e51f1f1771a07265cf9f3955b48 135 Pfam PF11208 Protein of unknown function (DUF2992) 4 135 1.1E-52 T 11-11-2016 IPR016787 Uncharacterised conserved protein UCP021328 Gferi_RS06140 4b2e067b43f35181b2f48b4b9125c5ba 71 Gene3D G3DSA:3.10.20.30 1 67 1.0E-21 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS06140 4b2e067b43f35181b2f48b4b9125c5ba 71 Pfam PF02597 ThiS family 5 67 9.8E-10 T 11-11-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 Gferi_RS06140 4b2e067b43f35181b2f48b4b9125c5ba 71 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 67 7.0E-19 T 11-11-2016 IPR010035 ThiS, thiamine-biosynthesis Gferi_RS06140 4b2e067b43f35181b2f48b4b9125c5ba 71 SUPERFAMILY SSF54285 1 67 4.3E-15 T 11-11-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Gferi_RS04050 b029854cc71f1d7d1374921a9d2e5605 824 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Gferi_RS04050 b029854cc71f1d7d1374921a9d2e5605 824 Pfam PF12392 Collagenase 393 510 1.3E-18 T 11-11-2016 IPR020988 Peptidase U32, collagenase Gferi_RS04050 b029854cc71f1d7d1374921a9d2e5605 824 Pfam PF01136 Peptidase family U32 76 302 2.8E-88 T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Gferi_RS04050 b029854cc71f1d7d1374921a9d2e5605 824 Pfam PF01136 Peptidase family U32 615 821 3.6E-31 T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Gferi_RS23330 80c2b3e93c78810382de83aff409e19f 136 Gene3D G3DSA:3.10.180.10 3 126 2.9E-31 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS23330 80c2b3e93c78810382de83aff409e19f 136 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 118 4.6E-10 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Gferi_RS23330 80c2b3e93c78810382de83aff409e19f 136 SUPERFAMILY SSF54593 2 122 8.19E-23 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS15680 b700cd4e0cb1f27cabfeb8afebd1548e 354 SUPERFAMILY SSF56266 5 344 1.41E-108 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS15680 b700cd4e0cb1f27cabfeb8afebd1548e 354 Pfam PF03576 Peptidase family S58 23 338 5.3E-117 T 11-11-2016 IPR005321 Peptidase S58, DmpA Gferi_RS15680 b700cd4e0cb1f27cabfeb8afebd1548e 354 Gene3D G3DSA:3.60.70.12 5 345 1.1E-131 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS24325 3093bf7f855a41b016e13ef098000e2a 401 Pfam PF01882 Protein of unknown function DUF58 192 269 1.0E-17 T 11-11-2016 IPR002881 Domain of unknown function DUF58 Gferi_RS21135 6b2675d13df234173993f522cdeec9ac 348 Pfam PF13310 Virulence protein RhuM family 77 330 1.1E-115 T 11-11-2016 IPR011204 Virulence protein RhuM-like Gferi_RS21135 6b2675d13df234173993f522cdeec9ac 348 PIRSF PIRSF015268 11 348 1.3E-144 T 11-11-2016 IPR011204 Virulence protein RhuM-like Gferi_RS16095 7c05de4f7c28764813f1f6aee5869bb3 169 Pfam PF12822 Protein of unknown function (DUF3816) 7 151 2.6E-12 T 11-11-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 Gferi_RS13585 fb3d90838fc4345bcac462cb397bdf9f 231 Pfam PF02674 Colicin V production protein 4 217 5.6E-24 T 11-11-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 Gferi_RS10320 1501af6b28eda19b99d04ab4c8b5b428 434 SUPERFAMILY SSF55383 55 138 1.83E-20 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10320 1501af6b28eda19b99d04ab4c8b5b428 434 Pfam PF07833 Copper amine oxidase N-terminal domain 52 144 1.0E-24 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10320 1501af6b28eda19b99d04ab4c8b5b428 434 Gene3D G3DSA:2.60.40.1560 244 317 2.7E-6 T 11-11-2016 Gferi_RS10320 1501af6b28eda19b99d04ab4c8b5b428 434 Gene3D G3DSA:3.30.457.10 58 126 8.5E-23 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS10320 1501af6b28eda19b99d04ab4c8b5b428 434 Gene3D G3DSA:3.30.457.10 127 156 1.0E-4 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS03080 34510205e59212067d618036e9c8c1d4 116 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 3 106 1.2E-29 T 11-11-2016 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV Gferi_RS20365 8ac0b6a5921ef01859b33d128b36b99c 395 Pfam PF00999 Sodium/hydrogen exchanger family 6 384 9.2E-43 T 11-11-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Gferi_RS23565 6a7ace6fad1fdbd8385175be1a70bf54 76 Pfam PF14192 Domain of unknown function (DUF4314) 6 72 4.8E-29 T 11-11-2016 IPR025463 Domain of unknown function DUF4314 Gferi_RS00435 26a08cea9761c092c101cf88fa555d55 161 SUPERFAMILY SSF54523 15 128 1.8E-14 T 11-11-2016 Gferi_RS00435 26a08cea9761c092c101cf88fa555d55 161 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 12 35 2.1E-9 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00435 26a08cea9761c092c101cf88fa555d55 161 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 13 33 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS00435 26a08cea9761c092c101cf88fa555d55 161 Gene3D G3DSA:3.30.700.10 15 115 7.0E-9 T 11-11-2016 Gferi_RS00435 26a08cea9761c092c101cf88fa555d55 161 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 9 34 1.4E-9 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site Gferi_RS12685 6597704b65a3731bdc7e0798090aaefe 255 Gene3D G3DSA:3.40.630.30 27 142 1.9E-6 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS12685 6597704b65a3731bdc7e0798090aaefe 255 Pfam PF14268 YoaP-like 205 249 1.2E-18 T 11-11-2016 IPR025685 YoaP-like domain Gferi_RS12685 6597704b65a3731bdc7e0798090aaefe 255 SUPERFAMILY SSF55729 48 140 1.22E-6 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS11860 95d79d2858f8802a5e91ab14854630af 117 SUPERFAMILY SSF51182 5 103 1.18E-16 T 11-11-2016 IPR011051 RmlC-like cupin domain Gferi_RS11860 95d79d2858f8802a5e91ab14854630af 117 Gene3D G3DSA:2.60.120.10 1 100 1.1E-15 T 11-11-2016 IPR014710 RmlC-like jelly roll fold Gferi_RS11860 95d79d2858f8802a5e91ab14854630af 117 Pfam PF07883 Cupin domain 33 100 6.5E-11 T 11-11-2016 IPR013096 Cupin 2, conserved barrel Gferi_RS03125 c27bd31f2323e415d5b13e042b2b0b8a 335 Gene3D G3DSA:3.30.420.10 23 198 9.5E-22 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS03125 c27bd31f2323e415d5b13e042b2b0b8a 335 Pfam PF13482 RNase_H superfamily 28 191 6.5E-35 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS03125 c27bd31f2323e415d5b13e042b2b0b8a 335 SUPERFAMILY SSF53098 16 189 5.87E-30 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS07090 fe6d31cfedfebb3f1ae23a1a363c2169 785 Pfam PF02687 FtsX-like permease family 271 388 1.7E-12 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS07090 fe6d31cfedfebb3f1ae23a1a363c2169 785 Pfam PF02687 FtsX-like permease family 658 775 1.8E-17 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS06960 4d7bbfe63c6bc79b2dcb7daec0fc7ab0 401 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 27 391 9.9E-126 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Gferi_RS06960 4d7bbfe63c6bc79b2dcb7daec0fc7ab0 401 Gene3D G3DSA:3.40.640.10 20 267 6.2E-92 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS06960 4d7bbfe63c6bc79b2dcb7daec0fc7ab0 401 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 20 395 5.3E-155 T 11-11-2016 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase Gferi_RS06960 4d7bbfe63c6bc79b2dcb7daec0fc7ab0 401 PIRSF PIRSF000390 17 398 2.4E-120 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Gferi_RS06960 4d7bbfe63c6bc79b2dcb7daec0fc7ab0 401 SUPERFAMILY SSF53383 20 396 2.18E-125 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS06960 4d7bbfe63c6bc79b2dcb7daec0fc7ab0 401 Gene3D G3DSA:3.90.1150.10 270 397 5.7E-39 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 Gferi_RS15715 79d1d1c9579ef3b58349ac502d6128fc 65 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 46 2.1E-17 T 11-11-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Gferi_RS15715 79d1d1c9579ef3b58349ac502d6128fc 65 Pfam PF09723 Zinc ribbon domain 1 42 2.3E-14 T 11-11-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Gferi_RS15715 79d1d1c9579ef3b58349ac502d6128fc 65 SMART SM00834 1 43 3.9E-15 T 11-11-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain Gferi_RS24340 b14f4ea83c5d950407af31b39a8419b5 382 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 353 364 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS24340 b14f4ea83c5d950407af31b39a8419b5 382 Pfam PF04015 Domain of unknown function (DUF362) 41 242 1.3E-43 T 11-11-2016 IPR007160 Domain of unknown function DUF362 Gferi_RS24340 b14f4ea83c5d950407af31b39a8419b5 382 Gene3D G3DSA:3.30.70.20 309 372 3.9E-14 T 11-11-2016 Gferi_RS24340 b14f4ea83c5d950407af31b39a8419b5 382 SUPERFAMILY SSF54862 303 373 1.41E-14 T 11-11-2016 Gferi_RS24340 b14f4ea83c5d950407af31b39a8419b5 382 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 324 335 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS09215 cf71daaed7d93b0a3adc521d1a884b5b 203 Gene3D G3DSA:1.10.357.10 7 202 4.3E-37 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS09215 cf71daaed7d93b0a3adc521d1a884b5b 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.1E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS09215 cf71daaed7d93b0a3adc521d1a884b5b 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.1E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS09215 cf71daaed7d93b0a3adc521d1a884b5b 203 SUPERFAMILY SSF46689 3 68 2.44E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS09215 cf71daaed7d93b0a3adc521d1a884b5b 203 SUPERFAMILY SSF48498 88 202 4.0E-10 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS09215 cf71daaed7d93b0a3adc521d1a884b5b 203 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Gferi_RS09215 cf71daaed7d93b0a3adc521d1a884b5b 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 56 8.3E-18 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Gferi_RS18190 f59aae3dfea588f903710bbde7d54902 235 SUPERFAMILY SSF89562 14 188 3.53E-24 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS18190 f59aae3dfea588f903710bbde7d54902 235 Gene3D G3DSA:3.50.30.40 14 188 1.2E-29 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS18190 f59aae3dfea588f903710bbde7d54902 235 Pfam PF03737 Demethylmenaquinone methyltransferase 17 181 1.9E-22 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Gferi_RS00345 4e8a01a64a6f4aec5d573bafb6b98125 147 Gene3D G3DSA:2.20.25.10 93 122 7.0E-4 T 11-11-2016 Gferi_RS18090 1a82e8b7f6aac606674e5b6323bec9f6 529 SUPERFAMILY SSF51905 464 525 6.18E-35 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18090 1a82e8b7f6aac606674e5b6323bec9f6 529 SUPERFAMILY SSF51905 95 290 6.18E-35 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18090 1a82e8b7f6aac606674e5b6323bec9f6 529 Gene3D G3DSA:3.50.50.60 473 525 1.2E-32 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18090 1a82e8b7f6aac606674e5b6323bec9f6 529 Gene3D G3DSA:3.50.50.60 97 289 1.2E-32 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS18090 1a82e8b7f6aac606674e5b6323bec9f6 529 PIRSF PIRSF038984 1 529 2.7E-240 T 11-11-2016 IPR028348 FAD dependent protein Gferi_RS26920 cfd9aeff4350a54bd0760f2f1f12766e 216 Gene3D G3DSA:3.40.50.150 4 212 2.9E-63 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS26920 cfd9aeff4350a54bd0760f2f1f12766e 216 SUPERFAMILY SSF53335 28 212 6.19E-42 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS26920 cfd9aeff4350a54bd0760f2f1f12766e 216 Pfam PF01596 O-methyltransferase 22 211 5.7E-32 T 11-11-2016 IPR002935 O-methyltransferase, family 3 GO:0008171 Gferi_RS26960 68c1b3aa3cb573e68740bd0fc11202b1 224 Gene3D G3DSA:3.20.20.70 95 206 3.2E-10 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS26960 68c1b3aa3cb573e68740bd0fc11202b1 224 SUPERFAMILY SSF51412 59 199 1.46E-11 T 11-11-2016 Gferi_RS19555 6363cc7f6f6989ba37c665878898438b 291 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 263 2.0E-119 T 11-11-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 Gferi_RS19555 6363cc7f6f6989ba37c665878898438b 291 SUPERFAMILY SSF53448 1 267 8.34E-65 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS19555 6363cc7f6f6989ba37c665878898438b 291 Gene3D G3DSA:3.90.550.10 4 271 9.5E-72 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases Gferi_RS19555 6363cc7f6f6989ba37c665878898438b 291 Pfam PF00483 Nucleotidyl transferase 5 264 9.4E-31 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Gferi_RS16625 fbe2151f0b2edf8021a02065a86424f9 95 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 80 6.0E-12 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS16625 fbe2151f0b2edf8021a02065a86424f9 95 Gene3D G3DSA:3.10.20.30 11 92 6.5E-19 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS16625 fbe2151f0b2edf8021a02065a86424f9 95 SUPERFAMILY SSF54292 11 90 1.91E-17 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 Gferi_RS14410 935c20bb87c8dffa89c812981d871f01 319 Pfam PF01758 Sodium Bile acid symporter family 45 214 3.9E-38 T 11-11-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 Gferi_RS23855 92ab310c8588703886941e442c097b1c 490 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 19 483 1.4E-178 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS23855 92ab310c8588703886941e442c097b1c 490 PIRSF PIRSF005690 3 489 1.1E-172 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS24060 0ee94550ab2205cd199384259b7eb0ee 322 SUPERFAMILY SSF55174 12 61 1.04E-6 T 11-11-2016 Gferi_RS24060 0ee94550ab2205cd199384259b7eb0ee 322 Gene3D G3DSA:3.10.290.10 11 71 2.8E-4 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS24060 0ee94550ab2205cd199384259b7eb0ee 322 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 9 317 2.6E-65 T 11-11-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS24060 0ee94550ab2205cd199384259b7eb0ee 322 SUPERFAMILY SSF55120 79 316 1.09E-50 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS24060 0ee94550ab2205cd199384259b7eb0ee 322 Pfam PF01479 S4 domain 13 59 1.3E-5 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS24060 0ee94550ab2205cd199384259b7eb0ee 322 SMART SM00363 13 73 5.6E-7 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 Gferi_RS24060 0ee94550ab2205cd199384259b7eb0ee 322 Pfam PF00849 RNA pseudouridylate synthase 92 252 4.7E-32 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS24060 0ee94550ab2205cd199384259b7eb0ee 322 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 142 156 - T 11-11-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Gferi_RS16160 bfa65136b976b3da66316ac8ff48adeb 79 SUPERFAMILY SSF89957 2 77 5.23E-14 T 11-11-2016 IPR029756 MTH1187/YkoF-like Gferi_RS16160 bfa65136b976b3da66316ac8ff48adeb 79 Pfam PF01910 Thiamine-binding protein 4 75 4.8E-8 T 11-11-2016 IPR002767 Thiamine-binding protein Gferi_RS16160 bfa65136b976b3da66316ac8ff48adeb 79 Gene3D G3DSA:3.30.70.930 2 75 2.4E-13 T 11-11-2016 IPR029756 MTH1187/YkoF-like Gferi_RS02500 cbc99cc7562c522e33f361653f174024 399 SUPERFAMILY SSF55186 88 229 2.22E-33 T 11-11-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 Gferi_RS02500 cbc99cc7562c522e33f361653f174024 399 SUPERFAMILY SSF50447 2 74 3.35E-14 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain Gferi_RS02500 cbc99cc7562c522e33f361653f174024 399 Pfam PF01411 tRNA synthetases class II (A) 12 87 8.6E-9 T 11-11-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Gferi_RS02500 cbc99cc7562c522e33f361653f174024 399 Pfam PF02272 DHHA1 domain 325 392 8.9E-9 T 11-11-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Gferi_RS02500 cbc99cc7562c522e33f361653f174024 399 SMART SM00863 180 222 3.1E-11 T 11-11-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Gferi_RS02500 cbc99cc7562c522e33f361653f174024 399 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 180 220 1.4E-7 T 11-11-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 Pfam PF06723 MreB/Mbl protein 8 334 6.9E-156 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 Gene3D G3DSA:3.30.420.40 158 184 1.2E-35 T 11-11-2016 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 Gene3D G3DSA:3.30.420.40 261 315 1.2E-35 T 11-11-2016 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 Gene3D G3DSA:3.30.420.40 8 157 2.7E-49 T 11-11-2016 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 130 149 4.8E-65 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 46 64 4.8E-65 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 66 89 4.8E-65 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 185 205 4.8E-65 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 298 324 4.8E-65 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 SUPERFAMILY SSF53067 147 326 2.16E-49 T 11-11-2016 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 SUPERFAMILY SSF53067 7 146 1.3E-42 T 11-11-2016 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 Gene3D G3DSA:3.90.640.10 185 257 3.5E-34 T 11-11-2016 Gferi_RS26275 89fb2f1b00e34aea1dc43acee4dc278e 344 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 7 334 3.8E-159 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 Gferi_RS15365 1a947181cb15379bb8f2f9e14187e2e5 267 SUPERFAMILY SSF55729 46 185 1.71E-9 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS15365 1a947181cb15379bb8f2f9e14187e2e5 267 Gene3D G3DSA:3.40.630.30 47 196 3.8E-6 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS01755 6e7731fb0b2687237d55a7ef03b7ab42 404 Pfam PF00860 Permease family 11 370 3.1E-87 T 11-11-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS01755 6e7731fb0b2687237d55a7ef03b7ab42 404 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 398 1.2E-99 T 11-11-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Gferi_RS01755 6e7731fb0b2687237d55a7ef03b7ab42 404 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 315 335 - T 11-11-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Gferi_RS22730 fd09f7f9a5f29a8461d1579ae821f7e1 241 SUPERFAMILY SSF55021 143 231 2.06E-5 T 11-11-2016 Gferi_RS22730 fd09f7f9a5f29a8461d1579ae821f7e1 241 Pfam PF02308 MgtC family 11 135 7.6E-37 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS22730 fd09f7f9a5f29a8461d1579ae821f7e1 241 PRINTS PR01837 MgtC/SapB protein signature 63 85 4.8E-45 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS22730 fd09f7f9a5f29a8461d1579ae821f7e1 241 PRINTS PR01837 MgtC/SapB protein signature 33 51 4.8E-45 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS22730 fd09f7f9a5f29a8461d1579ae821f7e1 241 PRINTS PR01837 MgtC/SapB protein signature 14 33 4.8E-45 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS22730 fd09f7f9a5f29a8461d1579ae821f7e1 241 PRINTS PR01837 MgtC/SapB protein signature 90 114 4.8E-45 T 11-11-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 Gferi_RS03620 f7312e812b46d7449e8cb233cce03aa9 195 Pfam PF01810 LysE type translocator 16 188 2.2E-9 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 Gferi_RS11440 8eee95331f95d62b3db77078351a2d62 317 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 15 299 7.7E-38 T 11-11-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Gferi_RS11440 8eee95331f95d62b3db77078351a2d62 317 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 14 302 8.3E-24 T 11-11-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Gferi_RS27195 886015395ba08a098e630d97df55e2f0 430 Gene3D G3DSA:3.40.640.10 63 275 2.4E-35 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 Gferi_RS27195 886015395ba08a098e630d97df55e2f0 430 Pfam PF06838 Methionine gamma-lyase 21 422 4.9E-188 T 11-11-2016 IPR009651 Putative methionine gamma-lyase Gferi_RS27195 886015395ba08a098e630d97df55e2f0 430 SUPERFAMILY SSF53383 27 374 3.06E-41 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase Gferi_RS01180 1b63d97f3833de1de14427c8c070226b 1666 Pfam PF05593 RHS Repeat 954 987 6.3E-6 T 11-11-2016 IPR031325 RHS repeat Gferi_RS01180 1b63d97f3833de1de14427c8c070226b 1666 Pfam PF05593 RHS Repeat 1364 1394 3.3E-5 T 11-11-2016 IPR031325 RHS repeat Gferi_RS01180 1b63d97f3833de1de14427c8c070226b 1666 Pfam PF05593 RHS Repeat 1100 1136 3.4E-7 T 11-11-2016 IPR031325 RHS repeat Gferi_RS01180 1b63d97f3833de1de14427c8c070226b 1666 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1121 1147 9.3E-4 T 11-11-2016 IPR006530 YD repeat Gferi_RS01180 1b63d97f3833de1de14427c8c070226b 1666 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1100 1140 4.8E-7 T 11-11-2016 IPR006530 YD repeat Gferi_RS01180 1b63d97f3833de1de14427c8c070226b 1666 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 949 973 0.0026 T 11-11-2016 IPR006530 YD repeat Gferi_RS01180 1b63d97f3833de1de14427c8c070226b 1666 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1386 1465 1.6E-25 T 11-11-2016 IPR022385 Rhs repeat-associated core GO:0097264 Gferi_RS11125 2cfa681aafd45e62093dd7ef3c624e94 410 Pfam PF00999 Sodium/hydrogen exchanger family 15 399 1.4E-47 T 11-11-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Gferi_RS26430 171621e13f32617ffe48030109a4d1a9 295 SUPERFAMILY SSF103378 116 250 1.31E-5 T 11-11-2016 IPR005656 MmgE/PrpD GO:0016829 Gferi_RS26430 171621e13f32617ffe48030109a4d1a9 295 Pfam PF03313 Serine dehydratase alpha chain 18 278 8.0E-81 T 11-11-2016 IPR005130 Serine dehydratase-like, alpha subunit Gferi_RS26430 171621e13f32617ffe48030109a4d1a9 295 TIGRFAM TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit 5 292 3.5E-114 T 11-11-2016 IPR004642 Serine dehydratase, alpha subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Gferi_RS02830 8850487da687cbaa2270aabb66df99f0 109 Gene3D G3DSA:1.20.58.80 1 95 1.1E-36 T 11-11-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 Gferi_RS02830 8850487da687cbaa2270aabb66df99f0 109 PIRSF PIRSF000699 1 103 5.6E-37 T 11-11-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 Gferi_RS02830 8850487da687cbaa2270aabb66df99f0 109 SUPERFAMILY SSF46973 1 95 1.83E-34 T 11-11-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 Gferi_RS02830 8850487da687cbaa2270aabb66df99f0 109 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 4 95 1.5E-35 T 11-11-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 Gferi_RS22255 9331d74cb606b34667e723c07064e758 449 PIRSF PIRSF006603 1 445 4.0E-62 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS22255 9331d74cb606b34667e723c07064e758 449 Pfam PF01554 MatE 17 178 3.7E-24 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS22255 9331d74cb606b34667e723c07064e758 449 Pfam PF01554 MatE 241 398 2.0E-10 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS23580 0c43b58ec93d5d73c113dd965114d93e 533 Pfam PF03354 Phage Terminase 50 513 9.9E-77 T 11-11-2016 IPR005021 Phage terminase Gferi_RS17510 0f3d3bfccbdbf112f6a810e11e6c6471 92 Gene3D G3DSA:2.30.30.30 7 87 1.2E-11 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 Gferi_RS17510 0f3d3bfccbdbf112f6a810e11e6c6471 92 SUPERFAMILY SSF50104 7 88 3.01E-12 T 11-11-2016 IPR008991 Translation protein SH3-like domain Gferi_RS14440 41a22f095d2c00986fdef191b5dfd2e3 100 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 97 2.3E-16 T 11-11-2016 IPR008407 Branched-chain amino acid transport, AzlD Gferi_RS01805 8a83afbb94a3793cff895acacd3c010c 87 Pfam PF02325 YGGT family 10 83 4.5E-21 T 11-11-2016 IPR003425 CCB3/YggT GO:0016020 Gferi_RS02690 b5539fc878e7c4bee3ef6f0b86ed496c 143 Pfam PF04657 Putative inner membrane exporter, YdcZ 6 139 1.6E-27 T 11-11-2016 IPR006750 Putative inner membrane exporter, YdcZ Gferi_RS02690 b5539fc878e7c4bee3ef6f0b86ed496c 143 SUPERFAMILY SSF103481 43 141 6.54E-5 T 11-11-2016 Gferi_RS04660 a5c295352c4364b30431c40fc1dee874 448 TIGRFAM TIGR02889 spore_YpeB: germination protein YpeB 4 438 2.1E-131 T 11-11-2016 IPR014239 Spore germination YpeB GO:0009847 Gferi_RS04660 a5c295352c4364b30431c40fc1dee874 448 Pfam PF14620 YpeB sporulation 12 371 1.7E-122 T 11-11-2016 IPR014239 Spore germination YpeB GO:0009847 Gferi_RS22270 0f4b9073b6ffb4fc22cd2f55ae605f76 240 Pfam PF02361 Cobalt transport protein 14 204 1.6E-18 T 11-11-2016 IPR003339 ABC/ECF transporter, transmembrane component Gferi_RS19990 464445f41529bebe3491b0f43d88dffb 123 Gene3D G3DSA:3.40.50.1400 1 122 5.2E-33 T 11-11-2016 Gferi_RS19990 464445f41529bebe3491b0f43d88dffb 123 Pfam PF01903 CbiX 10 115 8.9E-27 T 11-11-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 Gferi_RS19990 464445f41529bebe3491b0f43d88dffb 123 SUPERFAMILY SSF53800 1 121 5.76E-30 T 11-11-2016 Gferi_RS27020 81e2a504265869565401cecb4526bd69 182 Gene3D G3DSA:1.10.3210.10 12 144 2.5E-13 T 11-11-2016 IPR006674 HD domain Gferi_RS27020 81e2a504265869565401cecb4526bd69 182 SUPERFAMILY SSF109604 25 136 9.68E-12 T 11-11-2016 Gferi_RS15825 6f9b467c45c6a5d37e4799f64c9023da 183 Pfam PF14345 GDYXXLXY protein 16 178 8.3E-32 T 11-11-2016 IPR025833 GDYXXLXY protein Gferi_RS06700 0bcc7f2698eaa09657afbafbd5e40d97 307 Gene3D G3DSA:3.30.420.40 3 139 2.6E-44 T 11-11-2016 Gferi_RS06700 0bcc7f2698eaa09657afbafbd5e40d97 307 Pfam PF00480 ROK family 7 298 1.2E-56 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Gferi_RS06700 0bcc7f2698eaa09657afbafbd5e40d97 307 Gene3D G3DSA:3.30.420.40 140 284 9.4E-39 T 11-11-2016 Gferi_RS06700 0bcc7f2698eaa09657afbafbd5e40d97 307 SUPERFAMILY SSF53067 5 298 1.45E-60 T 11-11-2016 Gferi_RS21770 953764cf103eb1f3877696d45dbc7b0d 247 PIRSF PIRSF006648 3 247 1.5E-19 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS21770 953764cf103eb1f3877696d45dbc7b0d 247 PRINTS PR00164 ABC-2 type transport system membrane protein signature 192 211 1.1E-9 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS21770 953764cf103eb1f3877696d45dbc7b0d 247 PRINTS PR00164 ABC-2 type transport system membrane protein signature 135 159 1.1E-9 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS21770 953764cf103eb1f3877696d45dbc7b0d 247 PRINTS PR00164 ABC-2 type transport system membrane protein signature 22 43 1.1E-9 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS21770 953764cf103eb1f3877696d45dbc7b0d 247 PRINTS PR00164 ABC-2 type transport system membrane protein signature 172 191 1.1E-9 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS21770 953764cf103eb1f3877696d45dbc7b0d 247 Pfam PF01061 ABC-2 type transporter 4 211 2.0E-27 T 11-11-2016 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Gferi_RS23860 9fbb50e63a1a2958fc70b3a2f8480608 398 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 11 389 3.0E-94 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS23860 9fbb50e63a1a2958fc70b3a2f8480608 398 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 220 386 3.8E-35 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS07575 32fbeff577b595b89a607e510fa7aaf5 313 Gene3D G3DSA:1.10.3720.10 91 305 3.3E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07575 32fbeff577b595b89a607e510fa7aaf5 313 SUPERFAMILY SSF161098 94 296 3.01E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS07575 32fbeff577b595b89a607e510fa7aaf5 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 308 2.4E-42 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05175 fa6691c12908059dfd90d76aafe15c3c 305 Gene3D G3DSA:3.90.79.10 20 153 1.0E-39 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05175 fa6691c12908059dfd90d76aafe15c3c 305 Gene3D G3DSA:3.90.79.10 208 225 1.0E-39 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05175 fa6691c12908059dfd90d76aafe15c3c 305 Pfam PF00293 NUDIX domain 56 154 2.3E-10 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 Gferi_RS05175 fa6691c12908059dfd90d76aafe15c3c 305 SUPERFAMILY SSF46785 236 299 4.08E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS05175 fa6691c12908059dfd90d76aafe15c3c 305 SUPERFAMILY SSF55811 53 155 1.49E-25 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS05175 fa6691c12908059dfd90d76aafe15c3c 305 Gene3D G3DSA:1.10.10.10 228 299 2.6E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS12460 d385db39fb2b7259f78b00eb20fe37bc 194 Pfam PF10050 Predicted metal-binding protein (DUF2284) 23 182 9.8E-46 T 11-11-2016 IPR019271 Protein of unknown function DUF2284, metal-binding Gferi_RS08485 f03fa44b3afbd6a5d84a2c00774d5e30 490 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 16 460 1.6E-120 T 11-11-2016 IPR003846 Uncharacterised protein family UPF0061 Gferi_RS08485 f03fa44b3afbd6a5d84a2c00774d5e30 490 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 9 476 45.866 T 11-11-2016 IPR003846 Uncharacterised protein family UPF0061 Gferi_RS10355 84d59ffacb61d08a01e18af9807074c4 325 Pfam PF05593 RHS Repeat 84 118 5.9E-6 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10355 84d59ffacb61d08a01e18af9807074c4 325 Pfam PF05593 RHS Repeat 104 133 1.4E-5 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10355 84d59ffacb61d08a01e18af9807074c4 325 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 104 134 1.5E-4 T 11-11-2016 IPR006530 YD repeat Gferi_RS00295 e37e143af8fae968f96b6aedcece0f83 178 Pfam PF03780 Asp23 family, cell envelope-related function 112 169 7.7E-7 T 11-11-2016 IPR005531 Alkaline shock protein Asp23 Gferi_RS26850 cf3afd87ccaccdc5fcf240d89496a7ae 351 Pfam PF01594 Domain of unknown function DUF20 15 344 1.1E-65 T 11-11-2016 IPR002549 Transmembrane protein TqsA-like Gferi_RS18495 eda64549825734c4fa0d11c0cc517dca 147 SMART SM00347 20 120 5.3E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS18495 eda64549825734c4fa0d11c0cc517dca 147 Gene3D G3DSA:1.10.10.10 7 134 5.8E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18495 eda64549825734c4fa0d11c0cc517dca 147 SUPERFAMILY SSF46785 6 134 1.84E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS18495 eda64549825734c4fa0d11c0cc517dca 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 44 60 4.9E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS18495 eda64549825734c4fa0d11c0cc517dca 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 76 4.9E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS18495 eda64549825734c4fa0d11c0cc517dca 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 96 4.9E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS18495 eda64549825734c4fa0d11c0cc517dca 147 Pfam PF01047 MarR family 33 85 1.1E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Gferi_RS24430 669d5b681ee1d5b4fcf1a49bb8216631 344 Pfam PF02608 Basic membrane protein 44 337 1.2E-85 T 11-11-2016 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Gferi_RS24430 669d5b681ee1d5b4fcf1a49bb8216631 344 Gene3D G3DSA:3.40.50.2300 147 306 3.7E-63 T 11-11-2016 Gferi_RS24430 669d5b681ee1d5b4fcf1a49bb8216631 344 SUPERFAMILY SSF53822 54 259 1.08E-11 T 11-11-2016 IPR028082 Periplasmic binding protein-like I Gferi_RS16825 7c4f0d6d5e74102d30643b0b3d3b4c73 802 SUPERFAMILY SSF81606 588 795 5.49E-17 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS16825 7c4f0d6d5e74102d30643b0b3d3b4c73 802 TIGRFAM TIGR02865 spore_II_E: stage II sporulation protein E 39 799 6.2E-221 T 11-11-2016 IPR014221 Sporulation stage II, protein E KEGG: 04660+3.1.3.16 Gferi_RS16825 7c4f0d6d5e74102d30643b0b3d3b4c73 802 Gene3D G3DSA:3.60.40.10 721 796 7.0E-6 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS16825 7c4f0d6d5e74102d30643b0b3d3b4c73 802 SMART SM00331 585 798 7.3E-32 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS16825 7c4f0d6d5e74102d30643b0b3d3b4c73 802 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 612 797 6.2E-31 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 Gferi_RS10700 922d0dee46775b3a3afbdce3bace50d5 152 Pfam PF07238 PilZ domain 9 110 9.1E-6 T 11-11-2016 IPR009875 PilZ domain GO:0035438 Gferi_RS10700 922d0dee46775b3a3afbdce3bace50d5 152 Gene3D G3DSA:2.40.10.220 9 103 2.2E-4 T 11-11-2016 Gferi_RS22430 3d0d7fd88bb5551144ef4cb9f00bfc25 241 Pfam PF13649 Methyltransferase domain 37 133 1.4E-16 T 11-11-2016 Gferi_RS22430 3d0d7fd88bb5551144ef4cb9f00bfc25 241 Gene3D G3DSA:3.40.50.150 187 230 9.8E-32 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS22430 3d0d7fd88bb5551144ef4cb9f00bfc25 241 Gene3D G3DSA:3.40.50.150 9 142 9.8E-32 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS22430 3d0d7fd88bb5551144ef4cb9f00bfc25 241 SUPERFAMILY SSF53335 3 237 8.0E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS24550 0fbd14c51e856a0835aa1be79cd28fb8 376 SUPERFAMILY SSF52833 230 353 7.74E-21 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS24550 0fbd14c51e856a0835aa1be79cd28fb8 376 Gene3D G3DSA:3.40.30.10 227 353 1.4E-24 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS24550 0fbd14c51e856a0835aa1be79cd28fb8 376 Pfam PF00578 AhpC/TSA family 229 343 1.5E-12 T 11-11-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Gferi_RS16030 d425cee0d1228ccac80c8b682af26fa7 505 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 4 499 1.3E-135 T 11-11-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Gferi_RS16030 d425cee0d1228ccac80c8b682af26fa7 505 Pfam PF02652 L-lactate permease 7 499 3.9E-142 T 11-11-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Gferi_RS23795 9e4601e9d1f4700fd4c2a5fb904324f1 107 Gene3D G3DSA:1.10.10.10 4 105 4.2E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23795 9e4601e9d1f4700fd4c2a5fb904324f1 107 SUPERFAMILY SSF46785 6 103 8.49E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23795 9e4601e9d1f4700fd4c2a5fb904324f1 107 Pfam PF03551 Transcriptional regulator PadR-like family 16 88 7.5E-21 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal Gferi_RS16190 33ff025fafebb8a2cb883792d10c5ea7 370 Gene3D G3DSA:3.40.50.2300 146 302 1.7E-49 T 11-11-2016 Gferi_RS16190 33ff025fafebb8a2cb883792d10c5ea7 370 Pfam PF02608 Basic membrane protein 41 324 3.1E-67 T 11-11-2016 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Gferi_RS16080 198b2e55aeeab4ec51b040291816bfa9 522 Pfam PF03806 AbgT putative transporter family 19 519 1.9E-186 T 11-11-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 Gferi_RS11435 bca24ba1068d2837982fe7b865dcc91e 300 Pfam PF01040 UbiA prenyltransferase family 39 270 1.8E-31 T 11-11-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 Gferi_RS21340 5446057fcea365772820308468736b27 254 PIRSF PIRSF006648 1 254 3.1E-65 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 Gferi_RS21340 5446057fcea365772820308468736b27 254 Pfam PF01061 ABC-2 type transporter 14 219 5.9E-23 T 11-11-2016 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 Gferi_RS07025 515aa3fdeda35e094b477f9ffc229bad 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 289 1.5E-39 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS17190 8b01066c1bc17978ed7b442c3e7d1fce 176 PIRSF PIRSF038321 2 176 1.2E-79 T 11-11-2016 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 Gferi_RS17190 8b01066c1bc17978ed7b442c3e7d1fce 176 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 5 171 4.3E-80 T 11-11-2016 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 Gferi_RS17190 8b01066c1bc17978ed7b442c3e7d1fce 176 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 171 2.7E-61 T 11-11-2016 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 Gferi_RS15975 b407132b199ec1614e3d96773ea7a619 117 Gene3D G3DSA:3.30.70.1290 11 67 5.9E-4 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS15975 b407132b199ec1614e3d96773ea7a619 117 SUPERFAMILY SSF143422 9 70 2.75E-11 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS10505 43ddf1f3660c6aabce48698314d262ff 270 SUPERFAMILY SSF52540 1 122 7.03E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10505 43ddf1f3660c6aabce48698314d262ff 270 Gene3D G3DSA:3.40.50.300 1 128 1.4E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS10505 43ddf1f3660c6aabce48698314d262ff 270 Pfam PF03780 Asp23 family, cell envelope-related function 211 266 7.8E-9 T 11-11-2016 IPR005531 Alkaline shock protein Asp23 Gferi_RS12785 e78a3909b8cd8e5951da664e0f0dbbed 269 Gene3D G3DSA:3.20.20.150 6 264 5.5E-22 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS12785 e78a3909b8cd8e5951da664e0f0dbbed 269 Pfam PF01261 Xylose isomerase-like TIM barrel 21 226 4.4E-12 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS12785 e78a3909b8cd8e5951da664e0f0dbbed 269 SUPERFAMILY SSF51658 14 252 1.7E-30 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain Gferi_RS20695 f6b9d961098bf955b28ce167e2820dfe 184 Gene3D G3DSA:3.30.457.10 60 87 5.6E-6 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS20695 f6b9d961098bf955b28ce167e2820dfe 184 SUPERFAMILY SSF55383 44 80 5.23E-7 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS20695 f6b9d961098bf955b28ce167e2820dfe 184 Pfam PF07833 Copper amine oxidase N-terminal domain 34 84 1.6E-8 T 11-11-2016 IPR012854 Copper amine oxidase-like, N-terminal Gferi_RS05040 32408e8d441d8f3787b99fcb68b3b368 164 SUPERFAMILY SSF55729 1 161 4.32E-29 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS05040 32408e8d441d8f3787b99fcb68b3b368 164 Gene3D G3DSA:3.40.630.30 1 163 2.1E-33 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS05040 32408e8d441d8f3787b99fcb68b3b368 164 Pfam PF13302 Acetyltransferase (GNAT) domain 44 137 3.2E-12 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS02075 6da1af88195f3904ddf9af5e74b4100c 113 Gene3D G3DSA:2.20.28.10 1 38 1.7E-17 T 11-11-2016 IPR004039 Rubredoxin-type fold Gferi_RS02075 6da1af88195f3904ddf9af5e74b4100c 113 SUPERFAMILY SSF57802 1 36 5.39E-11 T 11-11-2016 Gferi_RS23250 08b7b72ae1ca931f93f2c84b3e621091 230 PIRSF PIRSF033094 1 230 6.9E-100 T 11-11-2016 IPR014578 Predicted phosphoesterase, CT488 type Gferi_RS23250 08b7b72ae1ca931f93f2c84b3e621091 230 SUPERFAMILY SSF56300 1 200 2.31E-28 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS23250 08b7b72ae1ca931f93f2c84b3e621091 230 Pfam PF00149 Calcineurin-like phosphoesterase 2 195 1.3E-16 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 Gferi_RS23250 08b7b72ae1ca931f93f2c84b3e621091 230 Gene3D G3DSA:3.60.21.10 159 228 3.1E-48 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS23250 08b7b72ae1ca931f93f2c84b3e621091 230 Gene3D G3DSA:3.60.21.10 1 121 3.1E-48 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like Gferi_RS14390 d6d6ea057dd7b27a0a0223d8f658c47e 624 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 19 617 3.1E-186 T 11-11-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein Gferi_RS14390 d6d6ea057dd7b27a0a0223d8f658c47e 624 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 109 544 3.4E-88 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS08385 ebc2c21b404082b1d6f096381f16a943 171 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 9 167 2.5E-49 T 11-11-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 Gferi_RS08385 ebc2c21b404082b1d6f096381f16a943 171 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 8 168 7.2E-48 T 11-11-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 Gferi_RS13650 000c030857b6f7b8cb8670d9b55aaadf 133 PIRSF PIRSF002070 1 129 8.0E-38 T 11-11-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Gferi_RS13650 000c030857b6f7b8cb8670d9b55aaadf 133 SUPERFAMILY SSF50249 1 133 3.77E-45 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS13650 000c030857b6f7b8cb8670d9b55aaadf 133 Gene3D G3DSA:2.40.50.140 1 133 9.1E-41 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold Gferi_RS13650 000c030857b6f7b8cb8670d9b55aaadf 133 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 111 7.8E-33 T 11-11-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Gferi_RS13650 000c030857b6f7b8cb8670d9b55aaadf 133 Hamap MF_00984 Single-stranded DNA-binding protein. 1 104 31.951 T 11-11-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Gferi_RS13650 000c030857b6f7b8cb8670d9b55aaadf 133 Pfam PF00436 Single-strand binding protein family 1 100 4.2E-33 T 11-11-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Gferi_RS11485 dafb4cd237431dab4d3528cb76938f31 932 Pfam PF00395 S-layer homology domain 50 91 2.6E-9 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11485 dafb4cd237431dab4d3528cb76938f31 932 Pfam PF00395 S-layer homology domain 232 276 9.7E-6 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS18790 300e7c9059ec4d071ff3650cd830290c 232 Pfam PF04972 BON domain 18 84 2.1E-9 T 11-11-2016 IPR007055 BON domain Gferi_RS18790 300e7c9059ec4d071ff3650cd830290c 232 Pfam PF04972 BON domain 96 157 4.3E-7 T 11-11-2016 IPR007055 BON domain Gferi_RS18790 300e7c9059ec4d071ff3650cd830290c 232 Pfam PF04972 BON domain 164 230 1.3E-17 T 11-11-2016 IPR007055 BON domain Gferi_RS24665 26c4c01bf87d140c9b3c5e99fff97b03 202 SUPERFAMILY SSF48371 24 184 1.03E-6 T 11-11-2016 IPR016024 Armadillo-type fold GO:0005488 Gferi_RS15410 821946716d473c93f50f8eb7b5d098a4 218 Pfam PF07796 Protein of unknown function (DUF1638) 31 192 4.8E-34 T 11-11-2016 IPR012437 Domain of unknown function DUF1638 Gferi_RS21015 ca03df31c384f1f5fec7a570ebc144af 253 Pfam PF01797 Transposase IS200 like 13 121 1.5E-14 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21015 ca03df31c384f1f5fec7a570ebc144af 253 SMART SM01321 9 123 3.1E-36 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21015 ca03df31c384f1f5fec7a570ebc144af 253 SUPERFAMILY SSF143422 3 128 4.58E-25 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS21015 ca03df31c384f1f5fec7a570ebc144af 253 Gene3D G3DSA:3.30.70.1290 12 126 8.8E-14 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS22450 9e3e1e259331f11d4075672cbce9e42d 64 Pfam PF13451 Probable zinc-ribbon domain 3 48 1.4E-22 T 11-11-2016 IPR025306 Probable zinc-binding domain Gferi_RS13470 da6f487b65f16e82d5feef7d6c19d795 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 13 431 5.5E-138 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane Gferi_RS26240 1f71a67b84c3fcd8ba3717adc6effdd3 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 7 192 1.9E-61 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Gferi_RS26240 1f71a67b84c3fcd8ba3717adc6effdd3 193 PIRSF PIRSF006102 3 193 2.7E-57 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 Gferi_RS26240 1f71a67b84c3fcd8ba3717adc6effdd3 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 6 193 1.3E-85 T 11-11-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 Gferi_RS26240 1f71a67b84c3fcd8ba3717adc6effdd3 193 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 4 193 26.385 T 11-11-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 Gferi_RS12145 c80d87c594df8edbe9c2c8ba6c38b014 119 Pfam PF12732 YtxH-like protein 25 93 5.8E-17 T 11-11-2016 IPR024623 Uncharacterised protein family YtxH Gferi_RS26045 052789e4b9490846d0711f9d2616ef61 154 Pfam PF02288 Dehydratase medium subunit 9 117 1.9E-29 T 11-11-2016 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor Gferi_RS26045 052789e4b9490846d0711f9d2616ef61 154 SUPERFAMILY SSF52968 8 123 4.32E-31 T 11-11-2016 IPR010254 B12-dependent dehydratases, beta subunit Gferi_RS26045 052789e4b9490846d0711f9d2616ef61 154 Gene3D G3DSA:3.40.50.10150 8 119 4.3E-33 T 11-11-2016 IPR010254 B12-dependent dehydratases, beta subunit Gferi_RS00315 9db7e3c8044792ee3a25da2ac1a3da0e 209 TIGRFAM TIGR02896 spore_III_AF: stage III sporulation protein AF 3 106 7.0E-26 T 11-11-2016 IPR014245 Sporulation stage III, protein AF Gferi_RS00315 9db7e3c8044792ee3a25da2ac1a3da0e 209 Pfam PF09581 Stage III sporulation protein AF (Spore_III_AF) 12 202 1.1E-37 T 11-11-2016 IPR014245 Sporulation stage III, protein AF Gferi_RS03845 595db0e660de7470079cf3b13f4aeef7 327 Pfam PF13155 Toprim-like 204 304 4.4E-18 T 11-11-2016 Gferi_RS03845 595db0e660de7470079cf3b13f4aeef7 327 Pfam PF13154 Protein of unknown function (DUF3991) 124 188 9.0E-11 T 11-11-2016 IPR025054 Domain of unknown function DUF3991 Gferi_RS03845 595db0e660de7470079cf3b13f4aeef7 327 SUPERFAMILY SSF57783 1 87 2.21E-11 T 11-11-2016 Gferi_RS03845 595db0e660de7470079cf3b13f4aeef7 327 Gene3D G3DSA:3.90.580.10 4 87 2.6E-6 T 11-11-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Gferi_RS03845 595db0e660de7470079cf3b13f4aeef7 327 Gene3D G3DSA:3.40.1360.10 199 311 2.3E-9 T 11-11-2016 Gferi_RS08780 0df8a4334a3b2ca767833229386976a0 327 SUPERFAMILY SSF101478 15 325 4.45E-47 T 11-11-2016 IPR005502 ADP-ribosylation/Crystallin J1 Gferi_RS08780 0df8a4334a3b2ca767833229386976a0 327 Pfam PF03747 ADP-ribosylglycohydrolase 20 295 5.4E-48 T 11-11-2016 IPR005502 ADP-ribosylation/Crystallin J1 Gferi_RS23740 fff1f5bf6ed0d32aea6e3b70b457d525 159 Pfam PF04324 BFD-like [2Fe-2S] binding domain 97 149 4.9E-6 T 11-11-2016 IPR007419 BFD-like [2Fe-2S]-binding domain Gferi_RS21325 6e8bbb5ad2d28d0ace7b36b8b697e311 115 Pfam PF06304 Protein of unknown function (DUF1048) 8 109 1.7E-38 T 11-11-2016 IPR008316 Uncharacterised conserved protein UCP029876 Gferi_RS21325 6e8bbb5ad2d28d0ace7b36b8b697e311 115 Gene3D G3DSA:1.10.1900.10 17 115 2.9E-36 T 11-11-2016 IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein GO:0003723 Gferi_RS21325 6e8bbb5ad2d28d0ace7b36b8b697e311 115 SUPERFAMILY SSF158560 1 110 1.03E-32 T 11-11-2016 Gferi_RS17855 36d93db18f08deedf517cfe516e63798 74 Pfam PF07293 Protein of unknown function (DUF1450) 5 70 7.1E-15 T 11-11-2016 IPR009910 Protein of unknown function DUF1450 Gferi_RS17855 36d93db18f08deedf517cfe516e63798 74 ProDom PD058324 UPF0349 LMO2392 BLI03401/BL03152 SA0800 SAR0901 LIN2491 SERP0525 GK2958 BT9727_4649 BC4937 5 74 1.0E-5 T 11-11-2016 Gferi_RS26330 810d106f034e8e5cb46b9ccb5edaab14 249 Gene3D G3DSA:2.70.70.10 107 243 1.1E-31 T 11-11-2016 Gferi_RS26330 810d106f034e8e5cb46b9ccb5edaab14 249 Pfam PF01551 Peptidase family M23 144 238 2.1E-21 T 11-11-2016 IPR016047 Peptidase M23 Gferi_RS26330 810d106f034e8e5cb46b9ccb5edaab14 249 SUPERFAMILY SSF51261 69 242 1.83E-32 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS17950 c14a7b03ada4c21b9d4757a4d69d97a4 270 TIGRFAM TIGR03309 matur_yqeB: selenium-dependent molybdenum hydroxylase system protein, YqeB family 7 260 1.3E-109 T 11-11-2016 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family Gferi_RS19585 9a152e615f93b69f2ad021922d989d81 467 SUPERFAMILY SSF53686 47 366 8.38E-55 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS19585 9a152e615f93b69f2ad021922d989d81 467 Gene3D G3DSA:3.40.50.1100 199 365 2.3E-23 T 11-11-2016 Gferi_RS19585 9a152e615f93b69f2ad021922d989d81 467 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 59 365 5.8E-48 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme Gferi_RS19585 9a152e615f93b69f2ad021922d989d81 467 Gene3D G3DSA:3.40.50.1100 95 181 9.5E-16 T 11-11-2016 Gferi_RS14380 497e4d0229327d25f2a2da15e28f254b 235 Gene3D G3DSA:3.40.50.10320 2 231 1.5E-45 T 11-11-2016 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 Gferi_RS14380 497e4d0229327d25f2a2da15e28f254b 235 Pfam PF02585 GlcNAc-PI de-N-acetylase 2 128 1.7E-24 T 11-11-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 Gferi_RS14380 497e4d0229327d25f2a2da15e28f254b 235 SUPERFAMILY SSF102588 2 232 2.75E-44 T 11-11-2016 IPR024078 Putative deacetylase LmbE-like domain Reactome: R-HSA-162710 Gferi_RS20225 fcdfe99af3738e65e15fc4737d62bbc1 179 Pfam PF07155 ECF-type riboflavin transporter, S component 14 175 1.5E-47 T 11-11-2016 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 Gferi_RS22440 622e545c20487749e851eaac50153f7f 217 Pfam PF01863 Protein of unknown function DUF45 21 209 3.2E-54 T 11-11-2016 IPR002725 Protein of unknown function DUF45 Gferi_RS19320 1c5d9834c6fc9f5741753c99b16f58a3 514 Pfam PF03806 AbgT putative transporter family 16 512 5.2E-195 T 11-11-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 Gferi_RS18110 9b22094b916ed044eb601a805fe35f44 395 Pfam PF14319 Transposase zinc-binding domain 6 112 9.5E-40 T 11-11-2016 IPR026889 Transposase zinc-binding domain Gferi_RS18110 9b22094b916ed044eb601a805fe35f44 395 Pfam PF04986 Putative transposase 138 323 9.2E-66 T 11-11-2016 IPR007069 Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 Gferi_RS19500 0a5e8539f66cfe2f5695c1d2a0ebf09b 193 Pfam PF10628 Outer spore coat protein E (CotE) 9 165 4.1E-18 T 11-11-2016 IPR018901 Spore coat protein CotE Gferi_RS25020 c0533d21c7494da12c70c60db631e582 88 SUPERFAMILY SSF55594 4 88 3.66E-27 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25020 c0533d21c7494da12c70c60db631e582 88 Pfam PF00381 PTS HPr component phosphorylation site 4 83 1.8E-28 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25020 c0533d21c7494da12c70c60db631e582 88 PRINTS PR00107 Phosphocarrier protein signature 54 71 5.1E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25020 c0533d21c7494da12c70c60db631e582 88 PRINTS PR00107 Phosphocarrier protein signature 14 30 5.1E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25020 c0533d21c7494da12c70c60db631e582 88 PRINTS PR00107 Phosphocarrier protein signature 39 54 5.1E-15 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25020 c0533d21c7494da12c70c60db631e582 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Gferi_RS25020 c0533d21c7494da12c70c60db631e582 88 Gene3D G3DSA:3.30.1340.10 3 88 2.7E-31 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS25020 c0533d21c7494da12c70c60db631e582 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 82 6.9E-28 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like Gferi_RS04830 e41d5adb7ff0baadd321adc49e74993b 218 SUPERFAMILY SSF55729 5 145 4.6E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS04830 e41d5adb7ff0baadd321adc49e74993b 218 Gene3D G3DSA:3.40.630.30 8 144 1.3E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS04830 e41d5adb7ff0baadd321adc49e74993b 218 Pfam PF13508 Acetyltransferase (GNAT) domain 57 137 1.6E-10 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS21735 05fe74b4202be96b2fec2c3a3e09bb11 276 Pfam PF05908 Poly-gamma-glutamate hydrolase 30 211 4.6E-47 T 11-11-2016 IPR008585 Poly-gamma-glutamate hydrolase Gferi_RS07200 7a231c2bb112b13775a46615a4220e69 431 Pfam PF03600 Citrate transporter 14 362 4.2E-48 T 11-11-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Gferi_RS07200 7a231c2bb112b13775a46615a4220e69 431 TIGRFAM TIGR00784 citMHS: citrate transporter 1 430 1.6E-135 T 11-11-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 Gferi_RS14660 8eb140b35a1d858e1b4d087213b92854 522 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 21 515 8.1E-117 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS08185 7940584e959979d68f6264b81ab3ce74 349 Gene3D G3DSA:3.40.720.10 137 328 9.6E-18 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS08185 7940584e959979d68f6264b81ab3ce74 349 SUPERFAMILY SSF53649 137 326 1.85E-21 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS08185 7940584e959979d68f6264b81ab3ce74 349 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 248 330 2.1E-8 T 11-11-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 Gferi_RS23890 febae26af4b663b4e40a1a714e087257 330 Pfam PF03601 Conserved hypothetical protein 698 9 309 3.5E-90 T 11-11-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 Gferi_RS14265 7348ef0e5c739c95175d7467cb9029a0 341 Gene3D G3DSA:2.20.25.10 4 29 1.1E-5 T 11-11-2016 Gferi_RS19780 8930661550fb7129b94cba05718cda5c 192 SUPERFAMILY SSF109604 5 160 4.19E-12 T 11-11-2016 Gferi_RS19780 8930661550fb7129b94cba05718cda5c 192 Gene3D G3DSA:1.10.3210.10 4 162 1.2E-30 T 11-11-2016 IPR006674 HD domain Gferi_RS07740 e23a3c585554342a455d57334be61266 172 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 14 172 3.7E-10 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 Gferi_RS10125 a53f900c473ccf36b40780806ee05db5 151 Pfam PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) 24 150 1.4E-16 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS17850 8e00d1c3057c5f2706771b170b81886c 117 Pfam PF09413 Putative prokaryotic signal transducing protein 46 108 4.4E-10 T 11-11-2016 IPR018551 Domain of unknown function DUF2007 Gferi_RS00685 fa5f6ed9c5a93012c97043128140eb2d 237 Gene3D G3DSA:3.20.20.370 18 237 1.2E-61 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS00685 fa5f6ed9c5a93012c97043128140eb2d 237 Pfam PF01522 Polysaccharide deacetylase 61 170 5.3E-31 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 Gferi_RS00685 fa5f6ed9c5a93012c97043128140eb2d 237 SUPERFAMILY SSF88713 24 236 1.71E-59 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Gferi_RS22140 39bb442e7fa2e1d2b5d90734a09bc60d 467 Pfam PF12704 MacB-like periplasmic core domain 14 209 1.3E-14 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS17910 471f338245d00a02d04478007c36f8b1 152 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 25 149 7.3E-21 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS15060 8a4d0f47813fc1474ce89744ea3a20e9 89 SUPERFAMILY SSF55021 1 83 3.23E-20 T 11-11-2016 Gferi_RS15060 8a4d0f47813fc1474ce89744ea3a20e9 89 Gene3D G3DSA:3.30.70.260 1 88 6.6E-30 T 11-11-2016 Gferi_RS15060 8a4d0f47813fc1474ce89744ea3a20e9 89 Pfam PF13740 ACT domain 5 77 3.5E-15 T 11-11-2016 Gferi_RS15060 8a4d0f47813fc1474ce89744ea3a20e9 89 Hamap MF_01054 UPF0237 protein . 1 89 26.023 T 11-11-2016 IPR022986 Uncharacterised protein family UPF0237, ACT-type Gferi_RS15610 cba8c79149a50c88c9bb649313635baf 242 Pfam PF01881 CRISPR associated protein Cas6 93 241 3.6E-28 T 11-11-2016 IPR010156 CRISPR-associated protein, Cas6 GO:0016788 Gferi_RS15610 cba8c79149a50c88c9bb649313635baf 242 TIGRFAM TIGR01877 cas_cas6: CRISPR-associated endoribonuclease Cas6 47 240 1.3E-29 T 11-11-2016 IPR010156 CRISPR-associated protein, Cas6 GO:0016788 Gferi_RS11375 84c180d51cf00d86216dda0738f38dc7 198 Pfam PF02397 Bacterial sugar transferase 9 185 1.5E-59 T 11-11-2016 IPR003362 Bacterial sugar transferase Gferi_RS01225 5253bb1f25e273f7f87ffcc59bd80c23 339 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 307 3.5E-18 T 11-11-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase Gferi_RS19005 ecd0eda4e2d591559ad3b00c87081651 238 Pfam PF12730 ABC-2 family transporter protein 6 182 1.9E-27 T 11-11-2016 IPR032688 ABC-2 family transporter protein GO:0006810 Gferi_RS11640 08379f4b4473b92433d6d527f26f981b 524 SMART SM00257 473 517 2.1E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS11640 08379f4b4473b92433d6d527f26f981b 524 Gene3D G3DSA:3.10.350.10 472 516 1.5E-15 T 11-11-2016 IPR018392 LysM domain Gferi_RS11640 08379f4b4473b92433d6d527f26f981b 524 SUPERFAMILY SSF54106 472 516 1.96E-11 T 11-11-2016 IPR018392 LysM domain Gferi_RS11640 08379f4b4473b92433d6d527f26f981b 524 Pfam PF01476 LysM domain 474 516 3.2E-12 T 11-11-2016 IPR018392 LysM domain Gferi_RS11640 08379f4b4473b92433d6d527f26f981b 524 Pfam PF12673 Domain of unknown function (DUF3794) 37 118 2.5E-18 T 11-11-2016 IPR024300 Domain of unknown function DUF3794 Gferi_RS11640 08379f4b4473b92433d6d527f26f981b 524 Pfam PF12673 Domain of unknown function (DUF3794) 189 268 6.2E-17 T 11-11-2016 IPR024300 Domain of unknown function DUF3794 Gferi_RS11640 08379f4b4473b92433d6d527f26f981b 524 Pfam PF12673 Domain of unknown function (DUF3794) 346 427 9.1E-20 T 11-11-2016 IPR024300 Domain of unknown function DUF3794 Gferi_RS23510 ead3df7c4b024acec198d8d2031f7113 782 Pfam PF05272 Virulence-associated protein E 451 650 2.5E-61 T 11-11-2016 IPR007936 Virulence-associated E Gferi_RS23610 d228d1912c40672695593b0568eb7a0f 111 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 6 105 8.7E-6 T 11-11-2016 IPR008767 Bacteriophage SPP1, head-tail adaptor Gferi_RS23610 d228d1912c40672695593b0568eb7a0f 111 Pfam PF05521 Phage head-tail joining protein 10 101 1.0E-12 T 11-11-2016 IPR008767 Bacteriophage SPP1, head-tail adaptor Gferi_RS16050 5fe75cd77af5d93e32483f572d039d22 425 Pfam PF12671 Putative amidase domain 236 412 4.7E-20 T 11-11-2016 IPR024301 Putative amidase domain Gferi_RS22740 7ac233dcd3a0c33d82ae976fe461daf4 115 Gene3D G3DSA:3.30.240.20 1 35 1.3E-7 T 11-11-2016 IPR023090 Uncharacterised domain UPF0702, alpha/beta domain Gferi_RS22740 7ac233dcd3a0c33d82ae976fe461daf4 115 Pfam PF04239 Protein of unknown function (DUF421) 1 84 5.4E-12 T 11-11-2016 IPR007353 Protein of unknown function DUF421 Gferi_RS26250 804beb57e99046533377a1e196150290 125 Pfam PF07009 NusG domain II 8 115 5.7E-31 T 11-11-2016 IPR024045 NusG, domain 2 Gferi_RS26250 804beb57e99046533377a1e196150290 125 Gene3D G3DSA:2.60.320.10 34 113 1.2E-24 T 11-11-2016 IPR024045 NusG, domain 2 Gferi_RS19665 7b57f7880d8fa71b6bddc0f4ae99be28 122 SUPERFAMILY SSF53146 1 122 2.22E-33 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Gferi_RS19665 7b57f7880d8fa71b6bddc0f4ae99be28 122 Gene3D G3DSA:3.30.420.130 1 115 7.3E-29 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Gferi_RS19665 7b57f7880d8fa71b6bddc0f4ae99be28 122 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 15 102 1.8E-20 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Gferi_RS21285 c87dee331229b5da0203c53831a2830d 209 Pfam PF12654 Domain of unknown function (DUF3786) 20 194 8.8E-41 T 11-11-2016 IPR024264 Domain of unknown function DUF3786 Gferi_RS20570 bec5ca34f531ffa49666a2b0dc95d49e 355 Pfam PF06089 L-asparaginase II 5 323 3.9E-103 T 11-11-2016 IPR010349 L-asparaginase II Gferi_RS09570 cf613b3c542e96f38a1d79d88b8b753d 426 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 1 148 5.6E-29 T 11-11-2016 IPR009827 Dicarboxylate carrier MatC N-terminal Gferi_RS09570 cf613b3c542e96f38a1d79d88b8b753d 426 PRINTS PR00758 Arsenical pump membrane protein signature 332 354 1.5E-5 T 11-11-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Gferi_RS09570 cf613b3c542e96f38a1d79d88b8b753d 426 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 1.5E-5 T 11-11-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Gferi_RS09570 cf613b3c542e96f38a1d79d88b8b753d 426 PRINTS PR00758 Arsenical pump membrane protein signature 285 309 1.5E-5 T 11-11-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Gferi_RS13160 b1a5976c183c8ecdc2539e89b28c337b 348 Pfam PF10776 Protein of unknown function (DUF2600) 16 343 1.2E-126 T 11-11-2016 IPR019712 Protein of unknown function DUF2600 KEGG: 00909+4.2.3.13|MetaCyc: PWY-5773|MetaCyc: PWY-5828 Gferi_RS18485 7978a1a80fd7c6a080c8c99c34908664 126 Pfam PF14276 Domain of unknown function (DUF4363) 9 125 8.0E-30 T 11-11-2016 IPR025373 Protein of unknown function DUF4363 Gferi_RS10250 ef5450fa3f11ba25683e461870e7f21f 207 Pfam PF07155 ECF-type riboflavin transporter, S component 32 180 1.9E-11 T 11-11-2016 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 Gferi_RS22485 4d889c4d593536182a466a2140cd6717 105 Pfam PF02627 Carboxymuconolactone decarboxylase family 18 98 7.3E-14 T 11-11-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 Gferi_RS22485 4d889c4d593536182a466a2140cd6717 105 SUPERFAMILY SSF69118 5 105 5.5E-21 T 11-11-2016 IPR029032 AhpD-like Reactome: R-HSA-5628897 Gferi_RS22485 4d889c4d593536182a466a2140cd6717 105 Gene3D G3DSA:1.20.1290.10 4 104 6.9E-25 T 11-11-2016 IPR029032 AhpD-like Reactome: R-HSA-5628897 Gferi_RS17860 58c1187e67cbc0713165a888b7bda4e4 107 Pfam PF01169 Uncharacterized protein family UPF0016 8 82 3.9E-22 T 11-11-2016 IPR001727 Gdt1 family GO:0032472 Gferi_RS06545 fe677a68c594ccb85d7376b877287aff 469 Pfam PF03553 Na+/H+ antiporter family 182 466 9.6E-54 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS05765 31b999fd19278c516a0d0680da259eec 355 Pfam PF01594 Domain of unknown function DUF20 16 344 1.8E-47 T 11-11-2016 IPR002549 Transmembrane protein TqsA-like Gferi_RS05765 31b999fd19278c516a0d0680da259eec 355 TIGRFAM TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI 19 350 2.3E-87 T 11-11-2016 IPR014227 Sporulation integral membrane protein YtvI Gferi_RS00110 5879dfe4a8ea4d12e4896a5e3b54fc98 426 Pfam PF01134 Glucose inhibited division protein A 3 225 2.5E-23 T 11-11-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Gferi_RS00110 5879dfe4a8ea4d12e4896a5e3b54fc98 426 Pfam PF01134 Glucose inhibited division protein A 274 352 3.9E-13 T 11-11-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Gferi_RS00110 5879dfe4a8ea4d12e4896a5e3b54fc98 426 Gene3D G3DSA:3.50.50.60 303 354 1.0E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00110 5879dfe4a8ea4d12e4896a5e3b54fc98 426 Gene3D G3DSA:3.50.50.60 2 193 1.0E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00110 5879dfe4a8ea4d12e4896a5e3b54fc98 426 SUPERFAMILY SSF51905 2 155 2.55E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS00110 5879dfe4a8ea4d12e4896a5e3b54fc98 426 SUPERFAMILY SSF51905 297 348 2.55E-28 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS07375 453f5807f405d2b8828e5ef0d0239194 72 SUPERFAMILY SSF64307 1 71 1.19E-16 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS07375 453f5807f405d2b8828e5ef0d0239194 72 Gene3D G3DSA:3.30.110.40 2 71 2.9E-15 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS07375 453f5807f405d2b8828e5ef0d0239194 72 Pfam PF01206 Sulfurtransferase TusA 3 71 6.1E-17 T 11-11-2016 IPR001455 TusA-like domain Gferi_RS07375 453f5807f405d2b8828e5ef0d0239194 72 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 4 28 - T 11-11-2016 IPR001455 TusA-like domain Gferi_RS06360 7fcd174aacc9ed7c54a58833eaf12151 210 SUPERFAMILY SSF101262 3 208 3.92E-59 T 11-11-2016 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Gferi_RS06360 7fcd174aacc9ed7c54a58833eaf12151 210 Pfam PF04961 Formiminotransferase-cyclodeaminase 7 187 1.7E-66 T 11-11-2016 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Gferi_RS14205 f4604e546216c4c15c955ab5b5d11149 337 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 316 9.5E-46 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS19365 9ad5109e04e25b1acd217e654ce5f4ce 288 Gene3D G3DSA:3.40.50.150 58 284 1.9E-34 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS19365 9ad5109e04e25b1acd217e654ce5f4ce 288 SUPERFAMILY SSF53335 58 284 2.48E-38 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS19365 9ad5109e04e25b1acd217e654ce5f4ce 288 Pfam PF13649 Methyltransferase domain 77 171 1.8E-19 T 11-11-2016 Gferi_RS11415 6fd42e23513be282bf3e6f4867d30283 626 Pfam PF00395 S-layer homology domain 180 212 1.8E-9 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11415 6fd42e23513be282bf3e6f4867d30283 626 Pfam PF00395 S-layer homology domain 29 75 7.3E-9 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS05015 f89335d07a3ae002b856d9524f6a871a 512 Pfam PF03806 AbgT putative transporter family 17 511 8.8E-178 T 11-11-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 Gferi_RS26615 2fc027d8d65e4c5670417f1b17b2dfd7 553 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 245 552 7.7E-76 T 11-11-2016 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 Gferi_RS26615 2fc027d8d65e4c5670417f1b17b2dfd7 553 Pfam PF08486 Stage II sporulation protein 242 330 3.9E-25 T 11-11-2016 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal Gferi_RS03035 bea39218c069f37e8bbb7e134e54b9f8 194 Pfam PF14097 Stage V sporulation protein AE1 6 184 1.7E-75 T 11-11-2016 IPR025914 Stage V sporulation protein AE Gferi_RS13860 3b48aed9e5aef53307e1056b50fcda14 288 PIRSF PIRSF006593 1 288 9.1E-83 T 11-11-2016 IPR014444 Uncharacterised conserved protein UCP006593 Gferi_RS13860 3b48aed9e5aef53307e1056b50fcda14 288 SUPERFAMILY SSF111321 1 283 4.45E-76 T 11-11-2016 IPR002791 Domain of unknown function DUF89 Gferi_RS13860 3b48aed9e5aef53307e1056b50fcda14 288 Pfam PF01937 Protein of unknown function DUF89 4 276 2.3E-52 T 11-11-2016 IPR002791 Domain of unknown function DUF89 Gferi_RS05450 3a91a32aa6498be1c9989f544f31e73e 587 Pfam PF08439 Oligopeptidase F 112 171 1.4E-9 T 11-11-2016 IPR013647 Oligopeptidase F, N-terminal domain Gferi_RS05450 3a91a32aa6498be1c9989f544f31e73e 587 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 2 585 1.2E-190 T 11-11-2016 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 Gferi_RS05450 3a91a32aa6498be1c9989f544f31e73e 587 Pfam PF01432 Peptidase family M3 193 574 1.9E-27 T 11-11-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 Gferi_RS05450 3a91a32aa6498be1c9989f544f31e73e 587 SUPERFAMILY SSF55486 46 586 3.21E-83 T 11-11-2016 Gferi_RS05450 3a91a32aa6498be1c9989f544f31e73e 587 Gene3D G3DSA:3.40.390.10 337 414 1.2E-7 T 11-11-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 Gferi_RS22200 186ca5b28417eeb58f4ed2b8b83348a6 102 Pfam PF14451 Mut7-C ubiquitin 25 73 5.2E-6 T 11-11-2016 IPR027798 Ubiquitin Mut7-C domain Gferi_RS22200 186ca5b28417eeb58f4ed2b8b83348a6 102 SUPERFAMILY SSF54285 9 78 1.09E-8 T 11-11-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Gferi_RS22200 186ca5b28417eeb58f4ed2b8b83348a6 102 Gene3D G3DSA:3.10.20.30 10 74 1.7E-9 T 11-11-2016 IPR012675 Beta-grasp domain Gferi_RS00405 d018ff931e7a37318a7d4aa623980b10 260 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 14 97 2.9E-30 T 11-11-2016 IPR010627 Peptidase A24A, N-terminal Gferi_RS00405 d018ff931e7a37318a7d4aa623980b10 260 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 173 183 3.7E-8 T 11-11-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial Gferi_RS00405 d018ff931e7a37318a7d4aa623980b10 260 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 116 133 3.7E-8 T 11-11-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial Gferi_RS00405 d018ff931e7a37318a7d4aa623980b10 260 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 184 195 3.7E-8 T 11-11-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial Gferi_RS00405 d018ff931e7a37318a7d4aa623980b10 260 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 196 211 3.7E-8 T 11-11-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial Gferi_RS00405 d018ff931e7a37318a7d4aa623980b10 260 Pfam PF01478 Type IV leader peptidase family 109 215 7.1E-17 T 11-11-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Gferi_RS06755 a8c092ca994747c0a579e21bed90e7a9 813 Pfam PF05569 BlaR1 peptidase M56 7 291 1.7E-52 T 11-11-2016 IPR008756 Peptidase M56 Gferi_RS14800 394394447e3b050e8399975aa6b2327b 153 Gene3D G3DSA:3.40.30.10 3 152 8.1E-40 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS14800 394394447e3b050e8399975aa6b2327b 153 PIRSF PIRSF000239 1 153 3.2E-23 T 11-11-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Gferi_RS14800 394394447e3b050e8399975aa6b2327b 153 Pfam PF00578 AhpC/TSA family 6 131 2.7E-31 T 11-11-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Gferi_RS14800 394394447e3b050e8399975aa6b2327b 153 SUPERFAMILY SSF52833 1 151 3.97E-39 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS23005 a23f55713e79c34b67d4e78127e9948a 255 Pfam PF11155 Domain of unknown function (DUF2935) 6 116 1.8E-22 T 11-11-2016 IPR021328 Protein of unknown function DUF2935 Gferi_RS23005 a23f55713e79c34b67d4e78127e9948a 255 Pfam PF11155 Domain of unknown function (DUF2935) 132 250 1.2E-23 T 11-11-2016 IPR021328 Protein of unknown function DUF2935 Gferi_RS23005 a23f55713e79c34b67d4e78127e9948a 255 SUPERFAMILY SSF158430 131 253 1.27E-26 T 11-11-2016 Gferi_RS23005 a23f55713e79c34b67d4e78127e9948a 255 SUPERFAMILY SSF158430 5 126 1.83E-26 T 11-11-2016 Gferi_RS05730 9a973928883364cac8076857b72658fb 419 Gene3D G3DSA:3.40.950.10 257 295 2.9E-14 T 11-11-2016 Gferi_RS05730 9a973928883364cac8076857b72658fb 419 Gene3D G3DSA:3.40.950.10 127 205 2.9E-14 T 11-11-2016 Gferi_RS05730 9a973928883364cac8076857b72658fb 419 SUPERFAMILY SSF53920 43 317 5.49E-44 T 11-11-2016 IPR009016 Iron hydrogenase Gferi_RS05730 9a973928883364cac8076857b72658fb 419 Gene3D G3DSA:3.30.70.20 10 68 4.1E-16 T 11-11-2016 Gferi_RS05730 9a973928883364cac8076857b72658fb 419 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 88 301 1.5E-25 T 11-11-2016 IPR004108 Iron hydrogenase, large subunit, C-terminal Gferi_RS05730 9a973928883364cac8076857b72658fb 419 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 15 26 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS05730 9a973928883364cac8076857b72658fb 419 Pfam PF04060 Putative Fe-S cluster 372 404 2.1E-11 T 11-11-2016 IPR007202 4Fe-4S domain GO:0051536 Gferi_RS05730 9a973928883364cac8076857b72658fb 419 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 44 55 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Gferi_RS05730 9a973928883364cac8076857b72658fb 419 SUPERFAMILY SSF54862 9 84 4.66E-19 T 11-11-2016 Gferi_RS05730 9a973928883364cac8076857b72658fb 419 Pfam PF13187 4Fe-4S dicluster domain 15 58 2.6E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Gferi_RS02215 c5f68081728cf618c13cb5fde837824a 272 Pfam PF03618 Kinase/pyrophosphorylase 7 262 9.3E-101 T 11-11-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 Gferi_RS02215 c5f68081728cf618c13cb5fde837824a 272 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 5 268 61.963 T 11-11-2016 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein Gferi_RS07030 e5b5f37cc4550138fa73fce7ed4695c0 291 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 275 1.0E-49 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS14820 5493cb64c078ffd6a709785fe37aa085 377 Pfam PF03845 Spore germination protein 12 325 5.6E-48 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS14820 5493cb64c078ffd6a709785fe37aa085 377 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 12 368 1.0E-52 T 11-11-2016 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 Gferi_RS03825 85ed42a6add18151559496c65c9751dc 71 Pfam PF12750 Maff2 family 1 70 1.3E-40 T 11-11-2016 IPR024272 MAFF2-related Gferi_RS00965 e65d47cd958c3eef8733510d39db0739 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 140 5.2E-23 T 11-11-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Gferi_RS00965 e65d47cd958c3eef8733510d39db0739 147 Pfam PF02050 Flagellar FliJ protein 22 140 4.6E-20 T 11-11-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 Gferi_RS20175 942ba35fe85346d6ad6f659ddf17178d 150 Pfam PF02001 Protein of unknown function DUF134 3 95 4.1E-23 T 11-11-2016 IPR002852 Uncharacterised protein family UPF0251 Gferi_RS20175 942ba35fe85346d6ad6f659ddf17178d 150 SUPERFAMILY SSF88659 37 81 1.46E-5 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS20175 942ba35fe85346d6ad6f659ddf17178d 150 Gene3D G3DSA:1.10.10.10 34 81 4.8E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS20175 942ba35fe85346d6ad6f659ddf17178d 150 Hamap MF_00674 UPF0251 protein . 2 98 23.733 T 11-11-2016 IPR002852 Uncharacterised protein family UPF0251 Gferi_RS03070 b0bcda032eb837560ba2287d2a57a503 136 SUPERFAMILY SSF55874 22 129 1.01E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03070 b0bcda032eb837560ba2287d2a57a503 136 Pfam PF13581 Histidine kinase-like ATPase domain 13 131 2.9E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03070 b0bcda032eb837560ba2287d2a57a503 136 SMART SM00387 31 135 5.2E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS03070 b0bcda032eb837560ba2287d2a57a503 136 TIGRFAM TIGR01925 spIIAB: anti-sigma F factor 1 132 1.3E-63 T 11-11-2016 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0030435|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 Gferi_RS03070 b0bcda032eb837560ba2287d2a57a503 136 Gene3D G3DSA:3.30.565.10 30 131 2.0E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain Gferi_RS13835 1385db117e572674f96103b86cdd6dfa 167 SUPERFAMILY SSF143422 2 35 6.28E-5 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Gferi_RS17790 93cb0fdecaf2c6511344d335ceec34d3 133 Pfam PF04205 FMN-binding domain 62 128 2.7E-9 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS17790 93cb0fdecaf2c6511344d335ceec34d3 133 SMART SM00900 57 130 6.3E-8 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS11745 114931332b6d6fcb93a22acc18dd68c9 201 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 91 195 4.3E-20 T 11-11-2016 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like Gferi_RS03010 96c3c690a512ec63255d13b7108cbb02 214 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 203 4.8E-66 T 11-11-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 Gferi_RS11870 6f02043b139cede5e2b56439a5781429 415 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 245 412 1.3E-32 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS11870 6f02043b139cede5e2b56439a5781429 415 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 16 414 2.9E-89 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS17560 6d05619efbac81a11372d5f85510fbf2 266 Pfam PF02361 Cobalt transport protein 14 235 1.7E-57 T 11-11-2016 IPR003339 ABC/ECF transporter, transmembrane component Gferi_RS17560 6d05619efbac81a11372d5f85510fbf2 266 Hamap MF_01461 Energy-coupling factor transporter transmembrane protein EcfT [ecfT]. 2 264 35.49 T 11-11-2016 IPR024919 ECF transporter transmembrane protein EcfT GO:0005215|GO:0006810|GO:0016021 Gferi_RS01985 4b7c59b8e1908ef47c2fdc9649f2706b 162 Pfam PF04977 Septum formation initiator 48 113 1.2E-6 T 11-11-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 Gferi_RS14145 02d3e73801b441d3d81c2f9875b9bd51 313 Pfam PF03595 Voltage-dependent anion channel 9 294 1.0E-24 T 11-11-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 Gferi_RS05485 a085d2024f27db827f1d4aa3f37d34ed 217 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 7 213 2.7E-63 T 11-11-2016 IPR005744 Hly-III GO:0016021|GO:0019835 Gferi_RS05485 a085d2024f27db827f1d4aa3f37d34ed 217 Pfam PF03006 Haemolysin-III related 6 206 5.8E-49 T 11-11-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 Gferi_RS02775 599bbe49373e56af9e0361a2cc017211 161 Gene3D G3DSA:3.40.630.30 2 156 3.2E-21 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02775 599bbe49373e56af9e0361a2cc017211 161 SUPERFAMILY SSF55729 4 140 3.24E-18 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase Gferi_RS02775 599bbe49373e56af9e0361a2cc017211 161 Pfam PF00583 Acetyltransferase (GNAT) family 59 133 1.8E-8 T 11-11-2016 IPR000182 GNAT domain GO:0008080 Gferi_RS06685 c1a2c54b3ab438758802cf6393051009 93 Pfam PF08666 SAF domain 11 86 4.1E-13 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS06685 c1a2c54b3ab438758802cf6393051009 93 SMART SM00858 11 87 6.5E-10 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 Gferi_RS24700 94788c9e192d7f5d4a64664d0f872493 249 Pfam PF03883 Protein of unknown function (DUF328) 1 234 3.8E-74 T 11-11-2016 IPR005583 Peroxide stress protein YaaA Gferi_RS24700 94788c9e192d7f5d4a64664d0f872493 249 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 247 27.032 T 11-11-2016 IPR005583 Peroxide stress protein YaaA Gferi_RS24830 61f1c6a2903ea430ac97abfd483e7eca 200 Pfam PF00005 ABC transporter 20 151 1.0E-22 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS24830 61f1c6a2903ea430ac97abfd483e7eca 200 SUPERFAMILY SSF52540 4 197 1.91E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24830 61f1c6a2903ea430ac97abfd483e7eca 200 ProSitePatterns PS00211 ABC transporters family signature. 124 138 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS24830 61f1c6a2903ea430ac97abfd483e7eca 200 SMART SM00382 28 199 2.7E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS24830 61f1c6a2903ea430ac97abfd483e7eca 200 Gene3D G3DSA:3.40.50.300 3 195 8.7E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS14430 b775757c201ace76c5b54ca1b50bfc4c 179 PIRSF PIRSF018748 1 179 3.5E-44 T 11-11-2016 IPR019271 Protein of unknown function DUF2284, metal-binding Gferi_RS14430 b775757c201ace76c5b54ca1b50bfc4c 179 Pfam PF10050 Predicted metal-binding protein (DUF2284) 20 178 4.6E-45 T 11-11-2016 IPR019271 Protein of unknown function DUF2284, metal-binding Gferi_RS13185 69febc1ca5e90cb45f186dd41a621681 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 281 3.1E-44 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS14180 c86277e7300d1b60b1311a1b24548584 104 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 6 101 4.8E-23 T 11-11-2016 IPR008407 Branched-chain amino acid transport, AzlD Gferi_RS10395 db8f8d3fd40d1903d1c21f1566f8ae39 131 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 8 39 4.7E-5 T 11-11-2016 IPR006530 YD repeat Gferi_RS10395 db8f8d3fd40d1903d1c21f1566f8ae39 131 Pfam PF05593 RHS Repeat 8 37 1.7E-5 T 11-11-2016 IPR031325 RHS repeat Gferi_RS06475 9b65b27120e97e1886a1fa830d36203b 176 Pfam PF04060 Putative Fe-S cluster 121 153 3.6E-11 T 11-11-2016 IPR007202 4Fe-4S domain GO:0051536 Gferi_RS25055 859f40af784e30e08ae5c4c28e5e4126 456 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 350 370 - T 11-11-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Gferi_RS25055 859f40af784e30e08ae5c4c28e5e4126 456 TIGRFAM TIGR03173 pbuX: xanthine permease 29 435 2.2E-141 T 11-11-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 Gferi_RS25055 859f40af784e30e08ae5c4c28e5e4126 456 Pfam PF00860 Permease family 25 401 1.3E-92 T 11-11-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS25055 859f40af784e30e08ae5c4c28e5e4126 456 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 21 433 6.9E-116 T 11-11-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Gferi_RS26140 fe67f0c33e479db78390e00b7b5f4a9d 170 Gene3D G3DSA:1.10.530.10 18 169 6.2E-45 T 11-11-2016 Gferi_RS26140 fe67f0c33e479db78390e00b7b5f4a9d 170 SUPERFAMILY SSF53955 15 165 1.07E-39 T 11-11-2016 IPR023346 Lysozyme-like domain Gferi_RS26140 fe67f0c33e479db78390e00b7b5f4a9d 170 Pfam PF01464 Transglycosylase SLT domain 25 134 6.6E-28 T 11-11-2016 IPR008258 Transglycosylase SLT domain 1 Gferi_RS07040 4da73edb8741286c14647b47aca87802 142 Pfam PF04657 Putative inner membrane exporter, YdcZ 4 138 8.1E-26 T 11-11-2016 IPR006750 Putative inner membrane exporter, YdcZ Gferi_RS25345 8c622ecbe46ea6b4e31d360193ec1035 651 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 136 571 4.8E-93 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Gferi_RS25345 8c622ecbe46ea6b4e31d360193ec1035 651 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 41 645 2.0E-226 T 11-11-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein Gferi_RS15355 fed3807653b37f678dfe34cc700136b4 232 Pfam PF09335 SNARE associated Golgi protein 72 189 6.9E-29 T 11-11-2016 IPR032816 SNARE associated Golgi protein Gferi_RS07805 7fb76315f6d3c82c91d00528796cea60 518 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 15 501 7.6E-187 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS07805 7fb76315f6d3c82c91d00528796cea60 518 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 50 501 3.5E-157 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS17185 6aa6bef499f71ce1602224d11351d18a 127 Pfam PF06923 Glucitol operon activator protein (GutM) 4 108 6.0E-30 T 11-11-2016 IPR009693 Glucitol operon activator Gferi_RS26110 9ffc83f3569cdb96b1a5ef30bf8f7dcf 317 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 169 1.2E-26 T 11-11-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase Gferi_RS24025 21fa0477a1ede08917f5e01ecac4c41a 213 Pfam PF02666 Phosphatidylserine decarboxylase 44 204 1.3E-14 T 11-11-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Gferi_RS00330 e581d7d56b06bc82489835edd9bf2cec 67 TIGRFAM TIGR02848 spore_III_AC: stage III sporulation protein AC 3 66 5.4E-30 T 11-11-2016 IPR009570 Stage III sporulation protein AC Gferi_RS00330 e581d7d56b06bc82489835edd9bf2cec 67 Pfam PF06686 Stage III sporulation protein AC/AD protein family 8 63 4.6E-19 T 11-11-2016 IPR025664 Stage III sporulation protein AC/AD family Gferi_RS19540 c6d0f5b7e55d6d17386ed52ac880f43c 383 SUPERFAMILY SSF53756 13 378 1.92E-70 T 11-11-2016 Gferi_RS19540 c6d0f5b7e55d6d17386ed52ac880f43c 383 Pfam PF13439 Glycosyltransferase Family 4 22 167 1.2E-8 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Gferi_RS19540 c6d0f5b7e55d6d17386ed52ac880f43c 383 Gene3D G3DSA:3.40.50.2000 153 351 2.2E-31 T 11-11-2016 Gferi_RS19540 c6d0f5b7e55d6d17386ed52ac880f43c 383 Pfam PF00534 Glycosyl transferases group 1 184 352 1.1E-37 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 Gferi_RS09675 837a286063d28397ee3b5171c1cd8a4d 87 Gene3D G3DSA:3.40.50.300 5 44 2.8E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09675 837a286063d28397ee3b5171c1cd8a4d 87 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 55 9.9E-5 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 Gferi_RS07410 2288a9c3698014ac05cbf5f3a193a099 413 Pfam PF13280 WYL domain 223 390 4.2E-12 T 11-11-2016 IPR026881 WYL domain Gferi_RS06165 b8118d141a6df7b5a094261a158afa68 87 Pfam PF12773 Double zinc ribbon 35 78 9.2E-10 T 11-11-2016 IPR025874 Double zinc ribbon Gferi_RS12905 0a18f8ade00e9ec855ef3e761952080d 498 SUPERFAMILY SSF48208 300 448 9.18E-7 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 Gferi_RS04630 f728d76ebdff0325768923a1ad2a3203 65 Pfam PF04070 Domain of unknown function (DUF378) 1 58 7.6E-28 T 11-11-2016 IPR007211 Protein of unknown function DUF378 Gferi_RS08535 103542c8f0b638561170bdeba7f5e3a9 300 Pfam PF14285 Domain of unknown function (DUF4367) 194 299 4.6E-11 T 11-11-2016 IPR025377 Domain of unknown function DUF4367 Gferi_RS23745 f5c25c3619faab256ff1a0939d8fccdd 200 Pfam PF03596 Cadmium resistance transporter 11 198 1.2E-61 T 11-11-2016 IPR004676 Cadmium resistance transporter Gferi_RS23745 f5c25c3619faab256ff1a0939d8fccdd 200 TIGRFAM TIGR00779 cad: cadmium resistance transporter family protein 12 199 5.7E-58 T 11-11-2016 IPR004676 Cadmium resistance transporter Gferi_RS04105 0d1f1f9f0138d072f43bd0fc884a52ea 347 Pfam PF02653 Branched-chain amino acid transport system / permease component 80 314 1.7E-19 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS26580 438a05ef44e3eb9569fdcdd1e14f2b40 306 SUPERFAMILY SSF158430 182 305 6.02E-40 T 11-11-2016 Gferi_RS26580 438a05ef44e3eb9569fdcdd1e14f2b40 306 Pfam PF11155 Domain of unknown function (DUF2935) 190 302 1.0E-35 T 11-11-2016 IPR021328 Protein of unknown function DUF2935 Gferi_RS26580 438a05ef44e3eb9569fdcdd1e14f2b40 306 Pfam PF11155 Domain of unknown function (DUF2935) 9 176 4.1E-43 T 11-11-2016 IPR021328 Protein of unknown function DUF2935 Gferi_RS26580 438a05ef44e3eb9569fdcdd1e14f2b40 306 SUPERFAMILY SSF158430 116 188 1.96E-39 T 11-11-2016 Gferi_RS26580 438a05ef44e3eb9569fdcdd1e14f2b40 306 SUPERFAMILY SSF158430 8 67 1.96E-39 T 11-11-2016 Gferi_RS08490 0693f1fd4f2121c3b0b3dd75aa78d319 233 Pfam PF06149 Protein of unknown function (DUF969) 1 215 8.8E-89 T 11-11-2016 IPR010374 Protein of unknown function DUF969 Gferi_RS22695 421807cc37c848964ffefaf1c42bfd45 160 PIRSF PIRSF005859 1 160 2.2E-46 T 11-11-2016 IPR004307 TspO/MBR-related protein GO:0016021 Gferi_RS22695 421807cc37c848964ffefaf1c42bfd45 160 Pfam PF03073 TspO/MBR family 14 156 1.3E-41 T 11-11-2016 IPR004307 TspO/MBR-related protein GO:0016021 Gferi_RS07065 aa36d0fad55dc62d9cd8840e50a83ca7 123 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 118 3.8E-9 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Gferi_RS07065 aa36d0fad55dc62d9cd8840e50a83ca7 123 SUPERFAMILY SSF54593 4 119 1.48E-24 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS07065 aa36d0fad55dc62d9cd8840e50a83ca7 123 Gene3D G3DSA:3.10.180.10 2 121 7.6E-28 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Gferi_RS12415 9fd425a26df6bc8cba9d36cff3c61012 253 Pfam PF03609 PTS system sorbose-specific iic component 5 241 7.4E-69 T 11-11-2016 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 Gferi_RS08725 46a64b631e6bf6fa893379f247254cf7 107 Pfam PF09860 Uncharacterized protein conserved in bacteria (DUF2087) 20 89 6.8E-23 T 11-11-2016 IPR018656 Domain of unknown function DUF2087 Gferi_RS08315 2b27e228ce50cc2647ddbb72ea1a9f8b 162 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 13 155 1.1E-16 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 Gferi_RS27090 9b3513d578c7efaf76fa907be3828ed5 158 Pfam PF01980 Uncharacterised protein family UPF0066 13 126 3.5E-26 T 11-11-2016 IPR023370 TsaA-like domain Gferi_RS27090 9b3513d578c7efaf76fa907be3828ed5 158 Gene3D G3DSA:2.40.30.70 17 142 1.1E-32 T 11-11-2016 IPR023370 TsaA-like domain Gferi_RS27090 9b3513d578c7efaf76fa907be3828ed5 158 SUPERFAMILY SSF118196 1 153 1.96E-42 T 11-11-2016 IPR023370 TsaA-like domain Gferi_RS12085 14dd386c2d4ec1df0de651e496b5d88a 69 Pfam PF07870 Protein of unknown function (DUF1657) 7 55 8.0E-17 T 11-11-2016 IPR012452 Protein of unknown function DUF1657 Gferi_RS22330 ab651175726eff799c50ae64aa2b7ca3 159 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 20 149 1.0E-33 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS22310 aed981ef8d4791df6c0b7348564d3044 166 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 71 121 3.0E-5 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS11685 97b54629fc24182eb37a125d640470c4 674 Pfam PF07705 CARDB 273 366 6.3E-6 T 11-11-2016 IPR011635 CARDB domain Gferi_RS24590 7071f794c655d7c5bb5a58394a58e6e0 307 Pfam PF07728 AAA domain (dynein-related subfamily) 62 194 2.9E-18 T 11-11-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 Gferi_RS24590 7071f794c655d7c5bb5a58394a58e6e0 307 Gene3D G3DSA:3.40.50.300 48 211 6.9E-28 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS24590 7071f794c655d7c5bb5a58394a58e6e0 307 SUPERFAMILY SSF52540 54 260 1.04E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22800 330a5b34a350eca2d1bcee7176b57502 299 Pfam PF03690 Uncharacterised protein family (UPF0160) 10 294 5.3E-71 T 11-11-2016 IPR003226 Metal-dependent protein hydrolase Gferi_RS18975 0436c3139d8333612b8b0e8f08c97702 115 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 6 105 2.0E-17 T 11-11-2016 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV Gferi_RS20975 4e5b3ae0982197b31bf12c3bc1d6f08b 132 Pfam PF04186 FxsA cytoplasmic membrane protein 7 114 1.4E-32 T 11-11-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 Gferi_RS14815 f4f998013cf0b41c762529c33fa63155 502 PIRSF PIRSF005690 1 490 2.3E-165 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS14815 f4f998013cf0b41c762529c33fa63155 502 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 8 474 1.0E-167 T 11-11-2016 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 Gferi_RS03060 5ff2ab628e5c32088239c2d8e3a783ae 225 Pfam PF12164 Stage V sporulation protein AA 19 105 1.3E-14 T 11-11-2016 IPR021997 Stage V sporulation protein AA Gferi_RS03060 5ff2ab628e5c32088239c2d8e3a783ae 225 Gene3D G3DSA:2.60.480.10 18 110 7.8E-17 T 11-11-2016 Gferi_RS18440 f3ba2040e3d68f387d15eb8b745bd2f5 330 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 4 220 5.1E-63 T 11-11-2016 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Gferi_RS13910 7f7046f45aaaccabdad1ea8c274afe6a 322 Pfam PF00005 ABC transporter 28 172 2.0E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS13910 7f7046f45aaaccabdad1ea8c274afe6a 322 SMART SM00382 37 229 1.1E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS13910 7f7046f45aaaccabdad1ea8c274afe6a 322 SUPERFAMILY SSF52540 14 232 2.92E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS13910 7f7046f45aaaccabdad1ea8c274afe6a 322 Gene3D G3DSA:3.40.50.300 4 233 5.0E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS26590 88add41b553d380471533026120c10a7 223 Pfam PF08955 BofC C-terminal domain 159 222 9.5E-7 T 11-11-2016 IPR015050 Bypass of forespore C, C-terminal Gferi_RS06525 d866efa4f3d1259c9f0c00440fd23b19 413 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 114 256 1.9E-6 T 11-11-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 Gferi_RS06525 d866efa4f3d1259c9f0c00440fd23b19 413 Gene3D G3DSA:3.40.50.720 110 253 4.4E-15 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS06525 d866efa4f3d1259c9f0c00440fd23b19 413 SUPERFAMILY SSF51735 109 255 1.14E-14 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS04800 439c70ef1dc88fb4c6d02636f8d87390 172 Pfam PF04191 Phospholipid methyltransferase 92 161 1.8E-11 T 11-11-2016 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 Gferi_RS01070 dd92225d0a4821d626027a3fd552d30b 2121 SUPERFAMILY SSF52540 297 508 3.87E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS01265 e9ae3450fdf9b1e5401a9079c8f4766d 82 TIGRFAM TIGR04540 CLB_0814_fam: conserved hypothetical protein 11 75 1.5E-20 T 11-11-2016 IPR030902 Conserved hypothetical protein Gferi_RS16280 8a3f99fe525abbd7978f9974c8d175d6 445 Pfam PF03390 2-hydroxycarboxylate transporter family 23 439 8.9E-148 T 11-11-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 Gferi_RS16280 8a3f99fe525abbd7978f9974c8d175d6 445 PIRSF PIRSF005348 4 445 9.5E-156 T 11-11-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 Gferi_RS26635 6768ba5779485ebe65bce6d8dcce9ca0 131 Pfam PF12670 Protein of unknown function (DUF3792) 16 127 1.4E-26 T 11-11-2016 IPR023804 Protein of unknown function DUF3792, transmembrane Gferi_RS26635 6768ba5779485ebe65bce6d8dcce9ca0 131 TIGRFAM TIGR04086 TIGR04086_membr: putative membrane protein, TIGR04086 family 17 130 1.6E-29 T 11-11-2016 IPR023804 Protein of unknown function DUF3792, transmembrane Gferi_RS18245 af14c340e95046fb08631f0a92a54d72 457 Pfam PF03390 2-hydroxycarboxylate transporter family 28 444 9.4E-91 T 11-11-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 Gferi_RS02285 b28b456d874cd1f0cecd146a341b5c40 92 Pfam PF07873 YabP family 27 90 2.2E-20 T 11-11-2016 IPR022476 Sporulation protein YabP/YqfC Gferi_RS02285 b28b456d874cd1f0cecd146a341b5c40 92 TIGRFAM TIGR02856 spore_yqfC: sporulation protein YqfC 9 91 4.2E-31 T 11-11-2016 IPR022477 Sporulation protein YqfC Gferi_RS20075 9cbc97c5eb1176643bf1008e64bf75a1 250 Pfam PF08241 Methyltransferase domain 51 146 9.7E-23 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 Gferi_RS20075 9cbc97c5eb1176643bf1008e64bf75a1 250 SUPERFAMILY SSF53335 7 249 1.4E-38 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS20075 9cbc97c5eb1176643bf1008e64bf75a1 250 Gene3D G3DSA:3.40.50.150 7 221 1.3E-35 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Gferi_RS01485 528ffdea636b5e0fbfd88b900d82d7df 256 Pfam PF01351 Ribonuclease HII 78 253 1.8E-36 T 11-11-2016 IPR024567 Ribonuclease HII/HIII domain Gferi_RS01485 528ffdea636b5e0fbfd88b900d82d7df 256 SUPERFAMILY SSF53098 65 252 5.77E-67 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS01485 528ffdea636b5e0fbfd88b900d82d7df 256 Hamap MF_00052_B Ribonuclease HII [rnhB]. 76 255 36.012 T 11-11-2016 IPR022898 Ribonuclease HII GO:0004523 Gferi_RS01485 528ffdea636b5e0fbfd88b900d82d7df 256 Gene3D G3DSA:3.30.420.10 76 216 6.7E-48 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS22545 d10ecde9c68addbf7dc7097a50a13664 462 Pfam PF03606 C4-dicarboxylate anaerobic carrier 13 458 1.8E-90 T 11-11-2016 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 Gferi_RS15230 b47f16f393490d0b66323ec0c098f414 449 Pfam PF03553 Na+/H+ antiporter family 149 431 1.1E-31 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS23425 b4cbf9f7822632f440d468a31363a6bf 65 Pfam PF14070 Putative motility protein 12 63 2.2E-9 T 11-11-2016 IPR025906 Putative motility protein Gferi_RS20860 2193470446aa95515c01453ce5aef14e 288 SUPERFAMILY SSF161098 50 275 2.49E-52 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20860 2193470446aa95515c01453ce5aef14e 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 274 2.4E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS20860 2193470446aa95515c01453ce5aef14e 288 Gene3D G3DSA:1.10.3720.10 3 276 1.1E-54 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06225 709d48f0aca4610e0be68468d324218e 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 114 2.1E-25 T 11-11-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 Gferi_RS06225 709d48f0aca4610e0be68468d324218e 223 Gene3D G3DSA:1.10.3720.10 14 221 1.8E-45 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06225 709d48f0aca4610e0be68468d324218e 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 219 4.5E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS06225 709d48f0aca4610e0be68468d324218e 223 SUPERFAMILY SSF161098 14 205 1.57E-45 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS21460 f34a67cb7cb3d0a4ef4f95f3f011307d 119 Pfam PF13280 WYL domain 1 111 4.4E-7 T 11-11-2016 IPR026881 WYL domain Gferi_RS25450 bb23e96cb2684c652c3a429340adc8f6 313 Gene3D G3DSA:3.60.70.12 6 309 2.9E-63 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS25450 bb23e96cb2684c652c3a429340adc8f6 313 Pfam PF03576 Peptidase family S58 9 309 5.5E-52 T 11-11-2016 IPR005321 Peptidase S58, DmpA Gferi_RS25450 bb23e96cb2684c652c3a429340adc8f6 313 SUPERFAMILY SSF56266 6 310 3.4E-55 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS09620 a29dae518fd2d426b63417d88ebf373e 385 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 45 384 2.0E-37 T 11-11-2016 IPR010327 FldB/FldC dehydratase alpha/beta subunit Gferi_RS24740 8dd17b1f2fce252256c33cd902ac04da 265 SUPERFAMILY SSF55811 87 231 4.64E-8 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS24740 8dd17b1f2fce252256c33cd902ac04da 265 Gene3D G3DSA:3.90.79.10 103 225 1.3E-4 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 Gferi_RS14635 4b1da9d73de52f92a9936d6b1f6c0e91 456 Pfam PF01554 MatE 21 182 1.6E-30 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS14635 4b1da9d73de52f92a9936d6b1f6c0e91 456 Pfam PF01554 MatE 247 405 6.0E-24 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS14635 4b1da9d73de52f92a9936d6b1f6c0e91 456 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 313 7.9E-60 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS14635 4b1da9d73de52f92a9936d6b1f6c0e91 456 PIRSF PIRSF006603 1 455 1.0E-120 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS25760 673f669cf6ff3f4413190951ab02f841 117 Pfam PF03862 SpoVA protein 4 112 5.6E-38 T 11-11-2016 IPR005562 SpoVA Gferi_RS25760 673f669cf6ff3f4413190951ab02f841 117 TIGRFAM TIGR02839 spore_V_AE: stage V sporulation protein AE 4 117 2.7E-49 T 11-11-2016 IPR014204 Sporulation stage V, protein AE Gferi_RS25445 fd08ecbb8f78cd8a70ace9adb640bf0c 339 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 307 3.4E-18 T 11-11-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase Gferi_RS09300 93554194cde29cf0d180dca0e0d20a6f 364 Pfam PF02653 Branched-chain amino acid transport system / permease component 53 329 3.6E-38 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS00485 d9a81688e9987287117addff32d6f344 282 SUPERFAMILY SSF69318 45 166 1.57E-6 T 11-11-2016 Gferi_RS00485 d9a81688e9987287117addff32d6f344 282 SUPERFAMILY SSF69318 223 240 1.57E-6 T 11-11-2016 Gferi_RS19100 c0fa451cb8b8def7b805e392bd0a419e 163 Pfam PF03830 PTS system sorbose subfamily IIB component 3 150 1.4E-38 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 Gferi_RS19100 c0fa451cb8b8def7b805e392bd0a419e 163 Gene3D G3DSA:3.40.35.10 2 162 1.3E-42 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 Gferi_RS19100 c0fa451cb8b8def7b805e392bd0a419e 163 SUPERFAMILY SSF52728 2 162 2.35E-39 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 Gferi_RS11205 df4bd3dfb3e93235a42bc7a729a790d5 109 SUPERFAMILY SSF57997 22 107 5.56E-5 T 11-11-2016 Gferi_RS06345 31fb031ecc30d8d3fa55118465146320 291 Gene3D G3DSA:3.20.20.220 4 291 1.7E-55 T 11-11-2016 IPR029041 FAD-linked oxidoreductase-like Gferi_RS06345 31fb031ecc30d8d3fa55118465146320 291 Pfam PF02219 Methylenetetrahydrofolate reductase 5 290 4.3E-38 T 11-11-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Gferi_RS06345 31fb031ecc30d8d3fa55118465146320 291 SUPERFAMILY SSF51730 1 290 4.9E-68 T 11-11-2016 IPR029041 FAD-linked oxidoreductase-like Gferi_RS05555 996f1a26b4d588ad366731e209f83089 249 Pfam PF01925 Sulfite exporter TauE/SafE 9 244 2.3E-42 T 11-11-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 Gferi_RS11055 26c0d39c3283a0140e5298f306bd7ecc 135 Pfam PF03899 ATP synthase I chain 11 107 7.0E-11 T 11-11-2016 IPR005598 ATP synthase protein I Gferi_RS16175 eebe189f94bdf47b42e0dc649d137b95 257 Pfam PF13566 Domain of unknown function (DUF4130 94 243 1.4E-22 T 11-11-2016 IPR025404 Domain of unknown function DUF4130 Gferi_RS08130 3ad021a48f864f0b1da613369660bb82 311 TIGRFAM TIGR02789 nickel_nikB: nickel ABC transporter, permease subunit NikB 1 309 6.3E-141 T 11-11-2016 IPR014156 Nickel ABC transporter, permease subunit NikB GO:0015099|GO:0035444 Gferi_RS08130 3ad021a48f864f0b1da613369660bb82 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 308 2.1E-43 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08130 3ad021a48f864f0b1da613369660bb82 311 SUPERFAMILY SSF161098 95 291 5.76E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS08130 3ad021a48f864f0b1da613369660bb82 311 Gene3D G3DSA:1.10.3720.10 94 305 7.9E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS13240 cbacb0bd2de6474b14b4bb3372138ae5 98 Pfam PF04025 Domain of unknown function (DUF370) 2 89 9.5E-9 T 11-11-2016 IPR007169 Uncharacterised protein family UPF0296 Gferi_RS22710 cfc9ee32822d63f80ed9478dc619140d 428 Pfam PF03611 PTS system sugar-specific permease component 11 410 3.1E-103 T 11-11-2016 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 Gferi_RS14625 e39e7014d25de9ba7119002dbd02ca43 371 Pfam PF01169 Uncharacterized protein family UPF0016 6 79 5.5E-22 T 11-11-2016 IPR001727 Gdt1 family GO:0032472 Gferi_RS14625 e39e7014d25de9ba7119002dbd02ca43 371 Pfam PF01169 Uncharacterized protein family UPF0016 104 178 1.4E-16 T 11-11-2016 IPR001727 Gdt1 family GO:0032472 Gferi_RS18075 534a9ee66417070d5e660c42c3fad61b 187 SUPERFAMILY SSF140478 29 176 1.2E-49 T 11-11-2016 IPR023353 LemA-like domain Gferi_RS18075 534a9ee66417070d5e660c42c3fad61b 187 Gene3D G3DSA:1.20.1440.20 18 187 3.2E-60 T 11-11-2016 IPR023353 LemA-like domain Gferi_RS18075 534a9ee66417070d5e660c42c3fad61b 187 Pfam PF04011 LemA family 9 187 7.4E-66 T 11-11-2016 IPR007156 LemA Gferi_RS10830 a2938699979c0ddd6cadb34134147f70 74 Pfam PF07872 Protein of unknown function (DUF1659) 7 50 1.2E-13 T 11-11-2016 IPR012454 Protein of unknown function DUF1659 Gferi_RS10970 e4c26c722f68609ee278ea950799fec0 328 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 54 324 1.7E-81 T 11-11-2016 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 Gferi_RS10970 e4c26c722f68609ee278ea950799fec0 328 Pfam PF08486 Stage II sporulation protein 51 157 1.1E-28 T 11-11-2016 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal Gferi_RS10970 e4c26c722f68609ee278ea950799fec0 328 TIGRFAM TIGR02870 spore_II_D: stage II sporulation protein D 31 324 1.2E-113 T 11-11-2016 IPR014225 Sporulation stage II, protein D firmicutes Gferi_RS12215 ba5f55259018c1b4a2282db3e3926f95 77 Pfam PF10764 Inhibitor of sigma-G Gin 14 58 6.4E-12 T 11-11-2016 IPR019700 Anti-sigma-G factor Gin Gferi_RS03770 905ae3fc1f9f074ea9726d684d2aef65 98 Pfam PF14195 Domain of unknown function (DUF4316) 16 76 7.3E-18 T 11-11-2016 IPR025465 Domain of unknown function DUF4316 Gferi_RS23625 90b5474239be98dd8503e49d36f3fa40 200 TIGRFAM TIGR01603 maj_tail_phi13: phage major tail protein, phi13 family 1 191 4.4E-30 T 11-11-2016 IPR006490 Phage major tail protein, phi13 family Gferi_RS02020 a977e40610a003adf59729104623c752 169 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 63 165 1.9E-15 T 11-11-2016 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like Gferi_RS06680 080cd360655777cedcaecef70b2d5ae5 386 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 2 381 1.5E-151 T 11-11-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 Gferi_RS05910 34c566f98d4d49789dc0c4358c7caa72 341 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 299 1.6E-49 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS07800 fa48d09da6c7c7bd100e5b9c74851320 264 Gene3D G3DSA:3.30.70.20 194 250 4.4E-4 T 11-11-2016 Gferi_RS11570 a5a8fd161c8ba714dc51e2cf156b1169 226 TIGRFAM TIGR02837 spore_II_R: stage II sporulation protein R 13 171 4.5E-61 T 11-11-2016 IPR014202 Sporulation stage II, protein R Gferi_RS11570 a5a8fd161c8ba714dc51e2cf156b1169 226 Pfam PF09551 Stage II sporulation protein R (spore_II_R) 41 166 9.3E-52 T 11-11-2016 IPR014202 Sporulation stage II, protein R Gferi_RS10100 1a0cc14effd58c3cdcffbaceb52c6fba 292 Pfam PF01925 Sulfite exporter TauE/SafE 169 283 2.8E-7 T 11-11-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 Gferi_RS10100 1a0cc14effd58c3cdcffbaceb52c6fba 292 Pfam PF01925 Sulfite exporter TauE/SafE 3 146 1.5E-8 T 11-11-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 Gferi_RS24415 ccf646556073ad993c7defec6af989ae 77 TIGRFAM TIGR01918 various_sel_PB: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family 1 76 3.5E-41 T 11-11-2016 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Gferi_RS21005 dc27bdda443cd1befd26697d9c245d2b 308 Gene3D G3DSA:3.30.930.10 222 305 1.0E-7 T 11-11-2016 Gferi_RS21005 dc27bdda443cd1befd26697d9c245d2b 308 Gene3D G3DSA:3.30.930.10 6 52 1.0E-7 T 11-11-2016 Gferi_RS17010 0a5d84dbb10e5c890e63d0ce6bc3c681 36 Pfam PF16935 Putative Holin-like Toxin (Hol-Tox) 2 33 5.5E-9 T 11-11-2016 IPR031616 Putative Holin-like Toxin (Hol-Tox) Gferi_RS14780 270659bb9b9455f9fcb64eb0f34f2e08 135 Pfam PF04205 FMN-binding domain 69 132 1.0E-9 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS14780 270659bb9b9455f9fcb64eb0f34f2e08 135 SMART SM00900 64 134 3.6E-8 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS04820 a0ede9fbbf9ee8e108d49cff48978bdc 120 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 3 116 6.6E-14 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS04820 a0ede9fbbf9ee8e108d49cff48978bdc 120 Gene3D G3DSA:1.10.3720.10 7 118 1.6E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS04820 a0ede9fbbf9ee8e108d49cff48978bdc 120 SUPERFAMILY SSF161098 5 104 1.57E-15 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 Gferi_RS05345 45e4a6ccfc7de36bb1c5d7bcd0ea5787 120 Pfam PF07875 Coat F domain 36 94 3.4E-10 T 11-11-2016 IPR012851 Spore coat protein CotF-like Gferi_RS16205 2fe695d9bd4610f979c4cab944c48485 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 13 282 3.6E-38 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS09090 9c838eeeb5c0170d55a8aa7085763c6f 121 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 16 114 7.7E-12 T 11-11-2016 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV Gferi_RS17615 07a7a3f3eaa238a666856316b03d6f81 113 Gene3D G3DSA:1.10.287.1080 19 77 1.6E-4 T 11-11-2016 Gferi_RS17615 07a7a3f3eaa238a666856316b03d6f81 113 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 22 101 8.0E-9 T 11-11-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Gferi_RS17615 07a7a3f3eaa238a666856316b03d6f81 113 SUPERFAMILY SSF101386 21 102 1.74E-7 T 11-11-2016 Gferi_RS07825 27e1588e19d7ee52703a2dd858452b7f 476 Pfam PF06253 Trimethylamine methyltransferase (MTTB) 10 463 7.4E-100 T 11-11-2016 IPR010426 Trimethylamine methyltransferase GO:0008168|GO:0015948 KEGG: 00680+2.1.1.250|MetaCyc: PWY-5250 Gferi_RS18920 9aea98f56d9452cff5bb03fcba23f868 292 SUPERFAMILY SSF52200 152 270 5.49E-9 T 11-11-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Gferi_RS18920 9aea98f56d9452cff5bb03fcba23f868 292 Gene3D G3DSA:3.40.50.10140 154 262 8.2E-5 T 11-11-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 Gferi_RS07995 d4fe2b425411d5ee9d4dbc477541c592 84 SUPERFAMILY SSF63829 11 76 2.16E-10 T 11-11-2016 Gferi_RS07995 d4fe2b425411d5ee9d4dbc477541c592 84 Gene3D G3DSA:2.120.10.30 14 75 1.1E-10 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like Gferi_RS19030 58fc45ececb1aa4e461681f28657c3a2 301 SUPERFAMILY SSF103481 188 290 2.55E-13 T 11-11-2016 Gferi_RS19030 58fc45ececb1aa4e461681f28657c3a2 301 SUPERFAMILY SSF103481 37 138 5.23E-17 T 11-11-2016 Gferi_RS19030 58fc45ececb1aa4e461681f28657c3a2 301 Pfam PF00892 EamA-like transporter family 151 285 6.3E-20 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS19030 58fc45ececb1aa4e461681f28657c3a2 301 Pfam PF00892 EamA-like transporter family 5 137 8.0E-25 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 Gferi_RS16425 777ed9c9255bcff99d5b1e4d64350c2c 329 Gene3D G3DSA:3.40.50.720 3 236 1.4E-63 T 11-11-2016 IPR016040 NAD(P)-binding domain Gferi_RS16425 777ed9c9255bcff99d5b1e4d64350c2c 329 Pfam PF00899 ThiF family 6 225 2.1E-60 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Gferi_RS16425 777ed9c9255bcff99d5b1e4d64350c2c 329 SUPERFAMILY SSF69572 6 317 1.96E-80 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Gferi_RS00780 6a77f66016d98de6ce1cd2a13c6119bc 62 Pfam PF03793 PASTA domain 3 49 7.3E-7 T 11-11-2016 IPR005543 PASTA domain Gferi_RS00305 527307697e2f8e239f5de3624b4a1dc4 234 Pfam PF12685 SpoIIIAH-like protein 6 230 1.6E-41 T 11-11-2016 IPR024232 Stage III sporulation protein AH-like Gferi_RS05965 195ec348d5ee10721887356d6246382b 151 Pfam PF10080 Predicted membrane protein (DUF2318) 43 146 8.1E-28 T 11-11-2016 IPR018758 Domain of unknown function DUF2318, membrane Gferi_RS07125 b977bb40528d7983f255f781484f9f01 424 Pfam PF02687 FtsX-like permease family 304 417 1.5E-19 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS07125 b977bb40528d7983f255f781484f9f01 424 Pfam PF12704 MacB-like periplasmic core domain 22 265 1.6E-31 T 11-11-2016 IPR025857 MacB-like periplasmic core domain Gferi_RS18025 1fe772bba80e9d66ed637f6fc133942f 59 Pfam PF08141 Small acid-soluble spore protein H family 1 55 7.3E-17 T 11-11-2016 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 Gferi_RS10230 48583f66c323e5c092725ce3314053c7 92 Pfam PF07875 Coat F domain 8 69 1.7E-20 T 11-11-2016 IPR012851 Spore coat protein CotF-like Gferi_RS20980 1eab95e46d66ec089cc808c70ab0125d 439 Pfam PF10646 Sporulation and spore germination 177 281 9.2E-9 T 11-11-2016 IPR019606 GerMN domain Gferi_RS20980 1eab95e46d66ec089cc808c70ab0125d 439 Pfam PF10646 Sporulation and spore germination 302 417 1.7E-12 T 11-11-2016 IPR019606 GerMN domain Gferi_RS20980 1eab95e46d66ec089cc808c70ab0125d 439 SMART SM00909 199 285 1.5E-9 T 11-11-2016 IPR019606 GerMN domain Gferi_RS20980 1eab95e46d66ec089cc808c70ab0125d 439 SMART SM00909 329 421 4.9E-13 T 11-11-2016 IPR019606 GerMN domain Gferi_RS14950 93861e216ef4597c1d9ae02bb1f08f87 516 Pfam PF03553 Na+/H+ antiporter family 157 476 3.1E-54 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS05530 6a7a70fdb0ee9bc4e287d1cc8116c6cb 316 Pfam PF00953 Glycosyl transferase family 4 72 232 1.9E-38 T 11-11-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Gferi_RS12545 0edbc8d231ec90c16c4c1c3c8b301b7a 792 Pfam PF02687 FtsX-like permease family 268 376 3.5E-12 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS12545 0edbc8d231ec90c16c4c1c3c8b301b7a 792 Pfam PF02687 FtsX-like permease family 666 783 5.8E-16 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS21960 971eb9ba3dbaff22118c642fb61f3892 316 Pfam PF02073 Thermophilic metalloprotease (M29) 173 283 1.4E-5 T 11-11-2016 IPR000787 Peptidase M29, aminopeptidase II GO:0004177|GO:0006508 Gferi_RS21960 971eb9ba3dbaff22118c642fb61f3892 316 SUPERFAMILY SSF144052 11 314 1.96E-55 T 11-11-2016 Gferi_RS07735 57477f25136fc22eb07587d1a7b3a61a 332 SUPERFAMILY SSF53850 22 272 7.24E-5 T 11-11-2016 Gferi_RS07735 57477f25136fc22eb07587d1a7b3a61a 332 PIRSF PIRSF017082 2 321 1.8E-66 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS07735 57477f25136fc22eb07587d1a7b3a61a 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 42 296 2.5E-37 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 Gferi_RS00430 9012fcfd8763b121299a438c7efaffd2 386 Pfam PF14341 PilX N-terminal 9 54 3.2E-6 T 11-11-2016 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain Gferi_RS21680 7d55cfb5c037f744753a1d7a646c3355 183 Pfam PF13787 Protein of unknown function with HXXEE motif 9 128 6.1E-20 T 11-11-2016 IPR025671 Protein of unknown function with HXXEE motif Gferi_RS05245 46457fee7d8b0212615454616429d681 70 Pfam PF07293 Protein of unknown function (DUF1450) 4 70 4.9E-19 T 11-11-2016 IPR009910 Protein of unknown function DUF1450 Gferi_RS05245 46457fee7d8b0212615454616429d681 70 ProDom PD058324 UPF0349 LMO2392 BLI03401/BL03152 SA0800 SAR0901 LIN2491 SERP0525 GK2958 BT9727_4649 BC4937 4 70 9.0E-8 T 11-11-2016 Gferi_RS23820 385649e743ece6fa009e32a247d1e9e3 442 PIRSF PIRSF006603 9 441 9.1E-54 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS23820 385649e743ece6fa009e32a247d1e9e3 442 Pfam PF01554 MatE 16 174 4.6E-14 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS23820 385649e743ece6fa009e32a247d1e9e3 442 Pfam PF01554 MatE 233 395 3.2E-18 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS11230 756f07b9bfce5429058134dcbe0b0237 102 Gene3D G3DSA:3.40.50.10580 6 102 5.4E-21 T 11-11-2016 IPR008218 ATPase, V1 complex, subunit F GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11230 756f07b9bfce5429058134dcbe0b0237 102 SUPERFAMILY SSF159468 4 102 2.88E-21 T 11-11-2016 IPR008218 ATPase, V1 complex, subunit F GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS11230 756f07b9bfce5429058134dcbe0b0237 102 Pfam PF01990 ATP synthase (F/14-kDa) subunit 4 94 4.7E-19 T 11-11-2016 IPR008218 ATPase, V1 complex, subunit F GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Gferi_RS04030 61369a43375c80a31399b06c3abcc4d9 193 Pfam PF10646 Sporulation and spore germination 57 171 7.0E-16 T 11-11-2016 IPR019606 GerMN domain Gferi_RS04030 61369a43375c80a31399b06c3abcc4d9 193 SMART SM00909 87 175 1.8E-11 T 11-11-2016 IPR019606 GerMN domain Gferi_RS26125 bfbbce8659a85eb3a9a12fa07bc4b690 436 Pfam PF14257 Domain of unknown function (DUF4349) 152 422 1.6E-57 T 11-11-2016 IPR025645 Domain of unknown function DUF4349 Gferi_RS26125 bfbbce8659a85eb3a9a12fa07bc4b690 436 Pfam PF13490 Putative zinc-finger 3 36 1.1E-5 T 11-11-2016 IPR027383 Putative zinc-finger Gferi_RS06270 116868573d76c02d0f13c18b74d2d410 201 Gene3D G3DSA:1.25.10.10 67 163 8.7E-5 T 11-11-2016 IPR011989 Armadillo-like helical Gferi_RS06270 116868573d76c02d0f13c18b74d2d410 201 SUPERFAMILY SSF48371 2 171 1.28E-6 T 11-11-2016 IPR016024 Armadillo-type fold GO:0005488 Gferi_RS02705 2ef5023e4896d96a10a1d5ce39677633 120 Pfam PF01925 Sulfite exporter TauE/SafE 7 118 3.8E-26 T 11-11-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 Gferi_RS09000 4622fb4a56634f0fc1e8462d23b69f55 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 366 392 5.4E-10 T 11-11-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS09000 4622fb4a56634f0fc1e8462d23b69f55 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 314 333 5.4E-10 T 11-11-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS09000 4622fb4a56634f0fc1e8462d23b69f55 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 157 181 5.4E-10 T 11-11-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS09000 4622fb4a56634f0fc1e8462d23b69f55 531 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 229 253 5.4E-10 T 11-11-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS09000 4622fb4a56634f0fc1e8462d23b69f55 531 Pfam PF00361 Proton-conducting membrane transporter 121 402 1.7E-61 T 11-11-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Gferi_RS01810 d254744813bfe09d6dddc0cbc4dbef74 146 Hamap MF_01197 Cell division protein SepF [sepF]. 3 136 19.844 T 11-11-2016 IPR023052 Cell division protein SepF GO:0090529 Gferi_RS01810 d254744813bfe09d6dddc0cbc4dbef74 146 Pfam PF04472 Protein of unknown function (DUF552) 57 128 2.5E-29 T 11-11-2016 IPR007561 Cell division protein SepF/SepF-related GO:0090529 Gferi_RS11705 8c03225e9ffa2631107fe86efd0afa8b 246 Pfam PF03692 Putative zinc- or iron-chelating domain 36 121 3.7E-10 T 11-11-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein Gferi_RS02640 e4028b380ef974b44b50ba3d3cf60b75 200 Pfam PF04205 FMN-binding domain 101 187 5.2E-14 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS02640 e4028b380ef974b44b50ba3d3cf60b75 200 SMART SM00900 101 192 1.5E-17 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 Gferi_RS18240 587aa1a1bbee59eabdf6a8af8c455652 429 Pfam PF03600 Citrate transporter 20 378 2.3E-31 T 11-11-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Gferi_RS26865 6d89e05d232ccb61241e747247a8bc23 702 Gene3D G3DSA:3.40.720.10 28 80 5.2E-9 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS26865 6d89e05d232ccb61241e747247a8bc23 702 Gene3D G3DSA:3.40.720.10 122 323 5.2E-9 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 Gferi_RS26865 6d89e05d232ccb61241e747247a8bc23 702 SUPERFAMILY SSF53649 226 328 1.55E-6 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 Gferi_RS05895 ef370d312b66394223bdcfa39caa06ec 160 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 23 154 1.8E-14 T 11-11-2016 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase Gferi_RS03785 cd642914c0ae651a9111a45fbca4090d 299 Pfam PF14283 Domain of unknown function (DUF4366) 115 283 2.3E-42 T 11-11-2016 IPR025376 Domain of unknown function DUF4366 Gferi_RS21230 175c59501d50830831fcec9c6249774d 164 Pfam PF01613 Flavin reductase like domain 49 163 6.1E-9 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 Gferi_RS21230 175c59501d50830831fcec9c6249774d 164 Gene3D G3DSA:2.30.110.10 12 162 1.3E-27 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS21230 175c59501d50830831fcec9c6249774d 164 SUPERFAMILY SSF50475 19 161 3.43E-15 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 Gferi_RS19590 793759bad4c3f9568ea13d41a0f132ac 480 Pfam PF03553 Na+/H+ antiporter family 19 219 8.8E-15 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS23230 7393f1c0503d7d175a8afd06ecb71d8b 425 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 2 163 1.2E-28 T 11-11-2016 IPR009827 Dicarboxylate carrier MatC N-terminal Gferi_RS07650 89dea1f184d6812c7d95acf707b86b4a 191 PIRSF PIRSF001296 2 191 7.1E-69 T 11-11-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Gferi_RS07650 89dea1f184d6812c7d95acf707b86b4a 191 Pfam PF02669 K+-transporting ATPase, c chain 8 188 1.9E-69 T 11-11-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Gferi_RS07650 89dea1f184d6812c7d95acf707b86b4a 191 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 3 190 31.195 T 11-11-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Gferi_RS07650 89dea1f184d6812c7d95acf707b86b4a 191 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 8 190 9.6E-62 T 11-11-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 Gferi_RS08190 6676c0ae418a88a689ad27df881d08bb 184 Pfam PF09819 ABC-type cobalt transport system, permease component 15 134 8.2E-11 T 11-11-2016 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted Gferi_RS09745 38e633a5a3304a62a8d5b8e6897ba71b 571 Pfam PF02538 Hydantoinase B/oxoprolinase 6 529 1.8E-178 T 11-11-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Gferi_RS11730 ac9e34c43cfd682d2ec4025ea5db7407 466 Pfam PF02447 GntP family permease 5 336 1.0E-7 T 11-11-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 Gferi_RS26690 5cdf3298f7b0618bfc624979500337ff 60 Gene3D G3DSA:1.10.10.60 20 55 7.9E-4 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS17215 77b9346f6328afbd778edffeee59b1b9 318 Pfam PF00676 Dehydrogenase E1 component 14 309 2.8E-87 T 11-11-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 Gferi_RS17215 77b9346f6328afbd778edffeee59b1b9 318 SUPERFAMILY SSF52518 4 318 2.07E-100 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS17215 77b9346f6328afbd778edffeee59b1b9 318 Gene3D G3DSA:3.40.50.970 2 318 3.5E-131 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold Gferi_RS07975 59b483345687a5a979afdf8b8f539bf9 309 Pfam PF05569 BlaR1 peptidase M56 7 281 5.0E-60 T 11-11-2016 IPR008756 Peptidase M56 Gferi_RS04005 76c42c4a8c3983b8f5f9a7f8daed6ff9 199 Pfam PF00882 Zinc dependent phospholipase C 6 154 4.2E-21 T 11-11-2016 IPR029002 Phospholipase C/D Gferi_RS19060 8970499202edb33c47b99552ffcf687a 149 Pfam PF14526 Integron-associated effector binding protein 4 148 8.7E-33 T 11-11-2016 IPR029441 Integron-associated effector binding protein Gferi_RS19060 8970499202edb33c47b99552ffcf687a 149 Gene3D G3DSA:3.20.80.10 2 149 1.1E-34 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS19060 8970499202edb33c47b99552ffcf687a 149 SUPERFAMILY SSF55136 1 149 1.92E-26 T 11-11-2016 IPR011256 Regulatory factor, effector binding domain Gferi_RS19060 8970499202edb33c47b99552ffcf687a 149 SMART SM00871 1 149 1.1E-26 T 11-11-2016 IPR010499 Bacterial transcription activator, effector binding Gferi_RS12680 95b84353d45e6ecb7b091eaa852cfb11 349 Pfam PF03576 Peptidase family S58 22 335 2.2E-98 T 11-11-2016 IPR005321 Peptidase S58, DmpA Gferi_RS12680 95b84353d45e6ecb7b091eaa852cfb11 349 SUPERFAMILY SSF56266 3 348 1.12E-87 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS12680 95b84353d45e6ecb7b091eaa852cfb11 349 Gene3D G3DSA:3.60.70.12 4 349 1.1E-108 T 11-11-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Gferi_RS20615 cd17921402d2421fcac234655e1aad1e 452 PIRSF PIRSF006603 1 449 3.6E-103 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS20615 cd17921402d2421fcac234655e1aad1e 452 Pfam PF01554 MatE 243 404 8.1E-29 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS20615 cd17921402d2421fcac234655e1aad1e 452 Pfam PF01554 MatE 16 176 5.0E-34 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS20615 cd17921402d2421fcac234655e1aad1e 452 TIGRFAM TIGR00797 matE: MATE efflux family protein 16 417 1.9E-98 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Gferi_RS08600 8b40cdb1c4c69f1730d330ed18bafd67 395 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 217 385 4.3E-44 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS08600 8b40cdb1c4c69f1730d330ed18bafd67 395 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 3 387 1.4E-103 T 11-11-2016 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 Gferi_RS14930 eb446a82caef7ffdc9a33aab04d9a90e 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 314 8.5E-47 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS19825 eb446a82caef7ffdc9a33aab04d9a90e 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 314 8.5E-47 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS07670 073803b668d2137a98f2f5523bda431e 276 Pfam PF02517 CAAX protease self-immunity 126 227 9.3E-6 T 11-11-2016 IPR003675 CAAX amino terminal protease GO:0016020 Gferi_RS20530 52eed3502ab4d17457444f24e8f9917b 181 Pfam PF14221 Domain of unknown function (DUF4330) 19 179 4.6E-26 T 11-11-2016 IPR025480 Protein of unknown function DUF4330 Gferi_RS23490 f44e4e66a552c8e983e21b5fe3545e09 182 Gene3D G3DSA:1.10.10.10 134 178 9.7E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS23490 f44e4e66a552c8e983e21b5fe3545e09 182 SUPERFAMILY SSF88659 134 177 4.45E-5 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Gferi_RS20575 d37999a4f25c89bdae6f7cbee6cfec08 157 Pfam PF14343 PrcB C-terminal 80 141 2.0E-17 T 11-11-2016 IPR025748 PrcB C-terminal domain Gferi_RS01050 2ec77e5612d024943591b47c7b92b11c 93 Gene3D G3DSA:3.30.420.10 3 82 3.8E-5 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 Pfam PF01494 FAD binding domain 8 295 1.9E-15 T 11-11-2016 IPR002938 FAD-binding domain GO:0071949 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 8 301 3.8E-65 T 11-11-2016 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 Gene3D G3DSA:3.50.50.60 4 158 1.1E-18 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 SUPERFAMILY SSF51905 8 164 2.63E-41 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 SUPERFAMILY SSF51905 253 324 2.63E-41 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 143 158 9.1E-16 T 11-11-2016 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 266 281 9.1E-16 T 11-11-2016 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 9.1E-16 T 11-11-2016 Gferi_RS13390 6019dcf3cafd79b602b1b899308d71d6 357 Gene3D G3DSA:3.30.9.10 159 303 5.7E-25 T 11-11-2016 Gferi_RS15075 b61f45ce1f6b8f959bebcc1ea3b5b137 320 Pfam PF01040 UbiA prenyltransferase family 20 287 4.0E-23 T 11-11-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 Gferi_RS13985 e80757cf5df6a02b116d46242d2d4f8c 256 Gene3D G3DSA:3.40.50.880 4 250 1.4E-57 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS13985 e80757cf5df6a02b116d46242d2d4f8c 256 Pfam PF07722 Peptidase C26 5 229 1.9E-63 T 11-11-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 Gferi_RS13985 e80757cf5df6a02b116d46242d2d4f8c 256 SUPERFAMILY SSF52317 35 248 4.41E-42 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like Gferi_RS09765 22b203a112f07e59304bcdbb51f71338 346 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 60 325 3.6E-60 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 Gferi_RS25740 99e50ec1b86d52c295054e5a54666fc5 68 Pfam PF07870 Protein of unknown function (DUF1657) 7 55 5.8E-17 T 11-11-2016 IPR012452 Protein of unknown function DUF1657 Gferi_RS24735 cd95df33765da5994d23e78914e2b2ef 199 Pfam PF03167 Uracil DNA glycosylase superfamily 24 166 1.4E-6 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS24735 cd95df33765da5994d23e78914e2b2ef 199 SUPERFAMILY SSF52141 28 194 6.54E-7 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS09395 e9460fb278fc9bb56e42cd7fb57e4ec4 687 Gene3D G3DSA:3.40.50.300 184 249 2.3E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09395 e9460fb278fc9bb56e42cd7fb57e4ec4 687 Gene3D G3DSA:3.40.50.300 11 139 2.3E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09395 e9460fb278fc9bb56e42cd7fb57e4ec4 687 SUPERFAMILY SSF52540 19 136 1.33E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09395 e9460fb278fc9bb56e42cd7fb57e4ec4 687 SUPERFAMILY SSF52540 335 422 1.33E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS09395 e9460fb278fc9bb56e42cd7fb57e4ec4 687 SUPERFAMILY SSF52540 174 296 1.33E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS23665 4567306f5d73ba0ab67545afcbc022c1 135 Pfam PF05105 Bacteriophage holin family 18 130 9.4E-41 T 11-11-2016 IPR006480 Bacteriophage holin family Gferi_RS23665 4567306f5d73ba0ab67545afcbc022c1 135 TIGRFAM TIGR01593 holin_tox_secr: toxin secretion/phage lysis holin 14 133 1.5E-29 T 11-11-2016 IPR006480 Bacteriophage holin family Gferi_RS09550 7b7424ea43da7a557e918e49d8780bbd 473 Pfam PF00939 Sodium:sulfate symporter transmembrane region 31 473 8.7E-24 T 11-11-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 Gferi_RS14245 0182c6f4568d5b3e02c92eddbab51114 205 Pfam PF11193 Protein of unknown function (DUF2812) 10 118 8.4E-32 T 11-11-2016 IPR021359 Protein of unknown function DUF2812 Gferi_RS23095 f93acfa48827c1fa6a9b32e04867ae43 75 Gene3D G3DSA:1.20.1290.10 8 73 7.4E-24 T 11-11-2016 IPR029032 AhpD-like Reactome: R-HSA-5628897 Gferi_RS23095 f93acfa48827c1fa6a9b32e04867ae43 75 SUPERFAMILY SSF69118 9 73 7.67E-21 T 11-11-2016 IPR029032 AhpD-like Reactome: R-HSA-5628897 Gferi_RS01390 1c27388a34d031724ea9793179cd909b 531 SUPERFAMILY SSF51261 320 529 2.77E-56 T 11-11-2016 IPR011055 Duplicated hybrid motif Gferi_RS01390 1c27388a34d031724ea9793179cd909b 531 Gene3D G3DSA:2.70.70.10 398 531 5.0E-48 T 11-11-2016 Gferi_RS01390 1c27388a34d031724ea9793179cd909b 531 Pfam PF01551 Peptidase family M23 427 526 5.8E-33 T 11-11-2016 IPR016047 Peptidase M23 Gferi_RS22600 747c72a654f0f3927d3111ac574f1e23 158 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 9 153 1.5E-17 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 Gferi_RS06385 68b9d7de4c3bb9165542e518c41339c8 275 Pfam PF02593 Domain of unknown function 6 263 1.1E-47 T 11-11-2016 IPR003745 Protein of unknown function DUF166 Gferi_RS22755 021f33a9c1a86ca7c1e7719d73be83af 105 Pfam PF12986 Domain of unknown function (DUF3870) 8 100 3.5E-30 T 11-11-2016 IPR024617 Domain of unknown function DUF3870 Gferi_RS21365 0f75c2ae05c0ac96c1d8320f5fae8669 307 Pfam PF05569 BlaR1 peptidase M56 13 299 1.9E-50 T 11-11-2016 IPR008756 Peptidase M56 Gferi_RS17725 7c5157e36a61b83d115ea284787e5466 195 SUPERFAMILY SSF82171 166 172 7.45E-5 T 11-11-2016 Gferi_RS17725 7c5157e36a61b83d115ea284787e5466 195 SUPERFAMILY SSF82171 28 135 7.45E-5 T 11-11-2016 Gferi_RS12295 b82eed28a2153332f4aeb2efad86f315 90 Pfam PF07441 SigmaK-factor processing regulatory protein BofA 15 88 3.0E-21 T 11-11-2016 IPR010001 SigmaK-factor processing regulatory BofA Gferi_RS12295 b82eed28a2153332f4aeb2efad86f315 90 TIGRFAM TIGR02862 spore_BofA: pro-sigmaK processing inhibitor BofA 10 89 3.0E-15 T 11-11-2016 IPR010001 SigmaK-factor processing regulatory BofA Gferi_RS23830 49774654dfd8c6f4fad60a2b6fb2c6b1 230 SUPERFAMILY SSF102114 20 203 6.8E-20 T 11-11-2016 Gferi_RS23830 49774654dfd8c6f4fad60a2b6fb2c6b1 230 Gene3D G3DSA:3.20.20.70 15 227 1.5E-21 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 Gferi_RS23830 49774654dfd8c6f4fad60a2b6fb2c6b1 230 Pfam PF04055 Radical SAM superfamily 27 181 8.5E-13 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 Gferi_RS15535 7d79d0c20c71a12ef900a7aabf879848 303 SUPERFAMILY SSF51366 47 223 1.58E-5 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 Gferi_RS02575 394496cbc5706c2a22283d10c39a961b 190 Pfam PF01810 LysE type translocator 5 188 2.0E-33 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 Gferi_RS12150 ba10e0f11cd4cedb797ab07946b1e60c 131 Gene3D G3DSA:1.10.275.10 30 92 2.9E-4 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal Gferi_RS12150 ba10e0f11cd4cedb797ab07946b1e60c 131 Pfam PF06103 Bacterial protein of unknown function (DUF948) 10 90 1.3E-9 T 11-11-2016 IPR009293 Uncharacterised protein family UPF0478 Gferi_RS24650 a1c060202e0f6e641aa3325dc465959d 321 Pfam PF14285 Domain of unknown function (DUF4367) 211 320 2.2E-12 T 11-11-2016 IPR025377 Domain of unknown function DUF4367 Gferi_RS14755 b3452993968350dc06a8b27d51c1bc9c 139 Pfam PF12653 Protein of unknown function (DUF3785) 4 139 1.3E-48 T 11-11-2016 IPR024210 Protein of unknown function DUF3785 Gferi_RS10370 bf929db96dd2d593af80c5b81f65fab3 279 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 58 88 1.2E-4 T 11-11-2016 IPR006530 YD repeat Gferi_RS10370 bf929db96dd2d593af80c5b81f65fab3 279 Pfam PF05593 RHS Repeat 58 87 1.2E-5 T 11-11-2016 IPR031325 RHS repeat Gferi_RS10370 bf929db96dd2d593af80c5b81f65fab3 279 Pfam PF05593 RHS Repeat 38 72 4.2E-6 T 11-11-2016 IPR031325 RHS repeat Gferi_RS07870 2892aeae46127ca422e62484cf149f96 156 Pfam PF14317 YcxB-like protein 91 150 2.4E-8 T 11-11-2016 IPR025588 YcxB-like protein Gferi_RS16365 402e41097b21332c9e127a26d20998b8 500 Pfam PF00474 Sodium:solute symporter family 38 432 2.8E-39 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS13370 cc2f7ecfe3d3c03e46854c94e4b7c9ef 88 Pfam PF03698 Uncharacterised protein family (UPF0180) 4 82 3.4E-15 T 11-11-2016 IPR005370 Uncharacterised protein family UPF0180 Gferi_RS22155 d879801dc366a80cf3df19a53ca45bfa 273 Pfam PF04854 Protein of unknown function, DUF624 41 130 5.9E-7 T 11-11-2016 IPR006938 Protein of unknown function DUF624 Gferi_RS25340 ab7b3089ac2ab05e9c7dc44d3530fbd1 172 Pfam PF08905 Domain of unknown function (DUF1850) 46 136 3.8E-16 T 11-11-2016 IPR015001 Protein of unknown function DUF1850 Gferi_RS08895 b922ea2d493f60b8ee49f60c87eea4a8 86 Pfam PF03698 Uncharacterised protein family (UPF0180) 4 80 6.1E-15 T 11-11-2016 IPR005370 Uncharacterised protein family UPF0180 Gferi_RS03685 74c87af14348e412a03d38312d2b0518 70 Pfam PF12960 Protein of unknown function (DUF3849) 6 69 1.7E-14 T 11-11-2016 IPR024383 Domain of unknown function DUF3849 Gferi_RS14175 129ac332a74301aa8a955e2b792d565b 227 Pfam PF03591 AzlC protein 12 150 4.1E-38 T 11-11-2016 IPR011606 Branched-chain amino acid transport, permease Gferi_RS16865 9ab8e065ebd69aa52f288b756c81f9b6 111 Pfam PF12986 Domain of unknown function (DUF3870) 7 99 2.4E-28 T 11-11-2016 IPR024617 Domain of unknown function DUF3870 Gferi_RS14580 6908ac1e3aaf6cadeb03c20775e80ae8 144 Pfam PF10844 Protein of unknown function (DUF2577) 9 140 8.2E-21 T 11-11-2016 IPR022555 Protein of unknown function, DUF2577 Gferi_RS14550 cd8684ab0491ce8d2dc50e5e15019b9f 352 ProDom PD032508 PHAGE-LIKE PBSX XKDK ELEMENT PHAGE LIN1278 SHEATH YQBL RELATED TAIL 219 288 1.0E-8 T 11-11-2016 IPR020287 Tail sheath protein, C-terminal domain Gferi_RS14550 cd8684ab0491ce8d2dc50e5e15019b9f 352 Pfam PF04984 Phage tail sheath protein 80 351 1.9E-33 T 11-11-2016 IPR007067 Tail sheath protein Gferi_RS19010 be9d9eedfade9a374e4da28af7b12573 382 Pfam PF13791 Sigma factor regulator C-terminal 211 377 1.6E-7 T 11-11-2016 IPR025672 Sigma factor regulator C-terminal domain Gferi_RS01820 91a6a094b53b496238df5c2ab7b55e03 421 Pfam PF12700 HlyD family secretion protein 263 414 6.5E-10 T 11-11-2016 IPR032681 HlyD family secretion protein Gferi_RS08630 5e85ade6ec6ef55ec172be96b13ec4cc 331 Pfam PF12698 ABC-2 family transporter protein 21 321 4.5E-19 T 11-11-2016 Gferi_RS10790 d1736d183279a40f1bcb45ffb155461c 91 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 88 1.0E-15 T 11-11-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 Gferi_RS10790 d1736d183279a40f1bcb45ffb155461c 91 Pfam PF04316 Anti-sigma-28 factor, FlgM 34 88 2.6E-18 T 11-11-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal Gferi_RS10790 d1736d183279a40f1bcb45ffb155461c 91 SUPERFAMILY SSF101498 2 88 2.48E-16 T 11-11-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 Gferi_RS21940 bf1216a15855162380b8d641d45e2154 525 Pfam PF03169 OPT oligopeptide transporter protein 23 233 1.5E-11 T 11-11-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 Gferi_RS21940 bf1216a15855162380b8d641d45e2154 525 Pfam PF03169 OPT oligopeptide transporter protein 218 521 3.2E-8 T 11-11-2016 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 Gferi_RS01030 291f259d7e0fc65a633e95eab2df234d 124 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 20 115 2.8E-32 T 11-11-2016 IPR025158 Mg chelatase-related protein, C-terminal domain Gferi_RS19040 8685bf4ff9f10f84cebce4d9d8f5cf26 485 Pfam PF00474 Sodium:solute symporter family 34 426 7.5E-56 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 Gferi_RS25915 0994b4887fba41a6d96b217a09ef91b3 134 Pfam PF04519 Polymer-forming cytoskeletal 15 111 2.1E-26 T 11-11-2016 IPR007607 Protein of unknown function DUF583 Gferi_RS11140 1326bf120f48b3219c99c30dec3d7a99 449 TIGRFAM TIGR00366 TIGR00366: TIGR00366 family protein 6 437 1.3E-175 T 11-11-2016 IPR006161 Conserved hypothetical protein CHP00336 Gferi_RS11140 1326bf120f48b3219c99c30dec3d7a99 449 Pfam PF02667 Short chain fatty acid transporter 3 449 9.4E-179 T 11-11-2016 IPR006160 Short chain fatty acid transporter AtoE Gferi_RS27150 025cf26d3d60a0e3c76d6dfb22a4477d 86 SUPERFAMILY SSF51230 3 84 3.4E-20 T 11-11-2016 IPR011053 Single hybrid motif Gferi_RS27150 025cf26d3d60a0e3c76d6dfb22a4477d 86 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-11-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Gferi_RS27150 025cf26d3d60a0e3c76d6dfb22a4477d 86 Pfam PF00364 Biotin-requiring enzyme 6 76 1.1E-15 T 11-11-2016 IPR000089 Biotin/lipoyl attachment Gferi_RS27150 025cf26d3d60a0e3c76d6dfb22a4477d 86 Gene3D G3DSA:2.40.50.100 5 84 1.6E-22 T 11-11-2016 Gferi_RS16110 1dbf4ddaaa0d6c0a8f8e833f898ceb30 189 PIRSF PIRSF016661 1 184 8.0E-43 T 11-11-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 Gferi_RS16110 1dbf4ddaaa0d6c0a8f8e833f898ceb30 189 Pfam PF02632 BioY family 30 174 8.1E-35 T 11-11-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 Gferi_RS11985 eb5214964c912346062368aea65b94ec 345 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 2 225 1.8E-56 T 11-11-2016 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Gferi_RS20245 307642a525b34a1d59597706c826e79a 342 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 4 223 9.0E-57 T 11-11-2016 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Gferi_RS06990 a28331efaabf52c4c498100ea60544c6 720 Pfam PF01391 Collagen triple helix repeat (20 copies) 528 586 8.1E-8 T 11-11-2016 IPR008160 Collagen triple helix repeat Gferi_RS06990 a28331efaabf52c4c498100ea60544c6 720 Pfam PF01391 Collagen triple helix repeat (20 copies) 177 235 4.3E-9 T 11-11-2016 IPR008160 Collagen triple helix repeat Gferi_RS06990 a28331efaabf52c4c498100ea60544c6 720 Pfam PF01391 Collagen triple helix repeat (20 copies) 488 532 2.2E-6 T 11-11-2016 IPR008160 Collagen triple helix repeat Gferi_RS12350 1ddbb92a2569a7ca939acb8a890986fb 248 Pfam PF14285 Domain of unknown function (DUF4367) 138 247 3.0E-12 T 11-11-2016 IPR025377 Domain of unknown function DUF4367 Gferi_RS16355 2c73dd3dc26c55c8f6a30eb982d8d204 239 Pfam PF07796 Protein of unknown function (DUF1638) 30 194 1.6E-43 T 11-11-2016 IPR012437 Domain of unknown function DUF1638 Gferi_RS11525 9c0cab10969a978c31bf3352163e61f5 345 Gene3D G3DSA:3.40.50.300 98 163 3.1E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS11525 9c0cab10969a978c31bf3352163e61f5 345 Gene3D G3DSA:3.40.50.300 9 63 3.1E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS03575 bf2d3e5a0b6f8482e5b50c107cf16ba6 221 Pfam PF06541 Putative ABC-transporter type IV 1 149 7.7E-40 T 11-11-2016 IPR010540 Putative ABC-transporter type IV CmpB/TMEM229 Gferi_RS20310 d877906ea534d9fc5c7aaad63deb450e 425 Gene3D G3DSA:2.40.50.100 233 265 8.0E-8 T 11-11-2016 Gferi_RS20310 d877906ea534d9fc5c7aaad63deb450e 425 Gene3D G3DSA:2.40.50.100 69 103 8.0E-8 T 11-11-2016 Gferi_RS05915 e8488617efae24fe893b212717430862 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 276 2.8E-48 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS07880 d6ca4d7e609a80b96009ede06c5886c3 174 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 34 165 4.3E-27 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS07130 12e22a51dc1dee07931ef72c284af875 243 SMART SM00382 35 230 9.5E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain Gferi_RS07130 12e22a51dc1dee07931ef72c284af875 243 Gene3D G3DSA:3.40.50.300 4 226 3.1E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07130 12e22a51dc1dee07931ef72c284af875 243 SUPERFAMILY SSF52540 5 228 6.41E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS07130 12e22a51dc1dee07931ef72c284af875 243 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Gferi_RS07130 12e22a51dc1dee07931ef72c284af875 243 Pfam PF00005 ABC transporter 26 174 1.7E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Gferi_RS22360 59835643c2729d2b3d4446855421f0b5 582 Pfam PF02538 Hydantoinase B/oxoprolinase 7 528 8.3E-150 T 11-11-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 Reactome: R-HSA-174403|Reactome: R-HSA-5578998 Gferi_RS21585 6c5d7f1c42635ed5da0c3bca070db161 575 Pfam PF05569 BlaR1 peptidase M56 3 288 1.5E-50 T 11-11-2016 IPR008756 Peptidase M56 Gferi_RS04320 7ee8c3375e9395fae09dc1f363c92415 175 Pfam PF14277 Domain of unknown function (DUF4364) 13 173 2.3E-48 T 11-11-2016 IPR025374 Protein of unknown function DUF4364 Gferi_RS04320 7ee8c3375e9395fae09dc1f363c92415 175 Gene3D G3DSA:1.10.10.10 33 94 7.5E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain Gferi_RS03635 ab3b5d99fae11df3e98d504ea0da074a 467 Pfam PF03432 Relaxase/Mobilisation nuclease domain 35 258 2.3E-32 T 11-11-2016 IPR005094 Endonuclease relaxase, MobA/VirD2 Gferi_RS25750 eb5578056d974e3b8589a1de58850f02 159 TIGRFAM TIGR02838 spore_V_AC: stage V sporulation protein AC 14 153 6.2E-59 T 11-11-2016 IPR014203 Sporulation stage V, protein AC Gferi_RS25750 eb5578056d974e3b8589a1de58850f02 159 Pfam PF03862 SpoVA protein 32 149 9.0E-38 T 11-11-2016 IPR005562 SpoVA Gferi_RS08585 966df58919a01920ff59d51787fd82d9 645 Pfam PF01136 Peptidase family U32 85 305 1.3E-62 T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Gferi_RS08585 966df58919a01920ff59d51787fd82d9 645 Pfam PF01136 Peptidase family U32 439 615 4.3E-14 T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 Gferi_RS22690 7454a74334047d4a1a9abff9d90d1954 295 PIRSF PIRSF003097 2 293 7.7E-70 T 11-11-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 Gferi_RS13785 28691e097b7d2b39c5c4509cafba7be4 278 Pfam PF09648 YycH protein 39 275 7.5E-25 T 11-11-2016 IPR018604 Regulatory protein YycH-like GO:0016021 Gferi_RS11610 a280083fc483169e4a5bc3e202120858 401 Pfam PF00395 S-layer homology domain 286 321 1.0E-9 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11610 a280083fc483169e4a5bc3e202120858 401 Pfam PF00395 S-layer homology domain 222 260 4.7E-12 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11610 a280083fc483169e4a5bc3e202120858 401 Pfam PF00395 S-layer homology domain 339 382 1.4E-11 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS04210 a3b30db39600ca701bc125d0fd887112 177 Pfam PF03167 Uracil DNA glycosylase superfamily 15 161 4.1E-21 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS04210 a3b30db39600ca701bc125d0fd887112 177 SUPERFAMILY SSF52141 11 173 2.22E-34 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS04210 a3b30db39600ca701bc125d0fd887112 177 Gene3D G3DSA:3.40.470.10 11 176 3.9E-51 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Gferi_RS22880 272bc24c0ff850201617f5c94e9bc593 132 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 35 112 1.0E-5 T 11-11-2016 Gferi_RS22880 272bc24c0ff850201617f5c94e9bc593 132 Gene3D G3DSA:3.40.30.10 34 126 2.0E-22 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS22880 272bc24c0ff850201617f5c94e9bc593 132 SUPERFAMILY SSF52833 34 125 9.06E-19 T 11-11-2016 IPR012336 Thioredoxin-like fold Gferi_RS12490 1f23617edf0ba52206b53232e3f3e7df 523 Pfam PF08757 CotH protein 94 408 1.4E-68 T 11-11-2016 IPR014867 Spore coat protein CotH Gferi_RS10820 7b1482871c30772328fe6561ba3e6212 47 Pfam PF12841 YvrJ protein family 8 41 9.9E-20 T 11-11-2016 IPR024419 Protein of unknown function YvrJ Gferi_RS25810 caa831111036100ab53aba1f227e0392 198 Pfam PF03698 Uncharacterised protein family (UPF0180) 116 193 2.8E-9 T 11-11-2016 IPR005370 Uncharacterised protein family UPF0180 Gferi_RS25810 caa831111036100ab53aba1f227e0392 198 Pfam PF03698 Uncharacterised protein family (UPF0180) 6 84 1.4E-6 T 11-11-2016 IPR005370 Uncharacterised protein family UPF0180 Gferi_RS06240 8938e5633658b7bf2c3b14892b145010 469 Pfam PF03553 Na+/H+ antiporter family 154 467 3.1E-57 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS21895 69f53bebcf1f9481da601b8949955db2 747 Pfam PF02687 FtsX-like permease family 254 371 2.3E-12 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS21895 69f53bebcf1f9481da601b8949955db2 747 Pfam PF02687 FtsX-like permease family 618 727 4.3E-14 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 Gferi_RS10135 19b5e891273b2e6a5f511c6c4cd7effa 623 TIGRFAM TIGR04480 D_pro_red_PrdA: D-proline reductase (dithiol), PrdA proprotein 4 593 2.2E-301 T 11-11-2016 IPR031002 D-proline reductase, PrdA proprotein GO:0050002|GO:0055114 KEGG: 00330+1.21.4.1 Gferi_RS10135 19b5e891273b2e6a5f511c6c4cd7effa 623 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 174 515 1.0E-26 T 11-11-2016 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 Gferi_RS26260 a1591b78e8a28bc9576f6b4432b6e938 82 Pfam PF14209 Domain of unknown function (DUF4321) 34 79 3.3E-19 T 11-11-2016 IPR025470 Protein of unknown function DUF4321 Gferi_RS13670 b497fd5d9d5000b54fc06e22469f20cc 316 Pfam PF09991 Predicted membrane protein (DUF2232) 18 306 2.9E-66 T 11-11-2016 IPR018710 Protein of unknown function DUF2232 Gferi_RS00950 530e1aff59a2629222951e4830556ebc 87 Pfam PF03963 Flagellar hook capping protein - N-terminal region 15 75 1.8E-24 T 11-11-2016 IPR005648 Flagellar hook capping protein Gferi_RS06455 b44d19466bfadc49e0f8c426f6a9154a 107 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 7 101 2.5E-25 T 11-11-2016 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 Gferi_RS06455 b44d19466bfadc49e0f8c426f6a9154a 107 Gene3D G3DSA:3.40.30.30 1 91 1.0E-5 T 11-11-2016 IPR009190 Protein of unknown function DUF1462 Gferi_RS02420 d707cbf15d065a015522c0bb82d33dfa 179 Pfam PF07155 ECF-type riboflavin transporter, S component 3 164 2.5E-36 T 11-11-2016 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 Gferi_RS21740 28a5987a572c08eea0e2b78bc7e88a71 232 Pfam PF05908 Poly-gamma-glutamate hydrolase 38 207 3.5E-60 T 11-11-2016 IPR008585 Poly-gamma-glutamate hydrolase Gferi_RS23255 362fae519bd6717c060941aa22b5ec9e 142 Pfam PF12773 Double zinc ribbon 16 111 1.4E-6 T 11-11-2016 IPR025874 Double zinc ribbon Gferi_RS05705 61d84f0afe4a9910b7f383ebe96ba82a 415 Pfam PF01098 Cell cycle protein 68 397 1.9E-77 T 11-11-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 Gferi_RS06330 7e2ed17eee840f812984ecb5900043ef 310 Pfam PF03599 CO dehydrogenase/acetyl-CoA synthase delta subunit 12 254 6.5E-41 T 11-11-2016 IPR016041 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel Gferi_RS06330 7e2ed17eee840f812984ecb5900043ef 310 SUPERFAMILY SSF51717 65 228 4.87E-5 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Gferi_RS09480 227ece8f57b2075fa6faee3fc756ec68 174 Hamap MF_01515 UPF0316 protein . 5 173 26.855 T 11-11-2016 IPR022930 Protein of unknown function UPF0316 Gferi_RS09480 227ece8f57b2075fa6faee3fc756ec68 174 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 113 165 1.6E-10 T 11-11-2016 IPR019264 Domain of unknown function DUF2179 Gferi_RS08805 38f9616fe8990b729993e03304cefb23 103 Pfam PF14330 Domain of unknown function (DUF4387) 4 100 1.3E-37 T 11-11-2016 IPR025496 Protein of unknown function DUF4387 Gferi_RS06275 3a45bd706d92e9337f10ae794abdaa35 63 Pfam PF10133 Predicted RNA-binding protein 1 60 1.1E-22 T 11-11-2016 IPR019300 RNA-binding protein, predicted Gferi_RS18375 4a8fbe46c9f3a53886bfa40198678f16 120 Pfam PF02595 Glycerate kinase family 1 113 9.7E-35 T 11-11-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Gferi_RS18375 4a8fbe46c9f3a53886bfa40198678f16 120 SUPERFAMILY SSF110738 2 113 1.07E-29 T 11-11-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 Gferi_RS18375 4a8fbe46c9f3a53886bfa40198678f16 120 Gene3D G3DSA:3.40.50.10350 2 116 1.7E-30 T 11-11-2016 IPR018197 Glycerate kinase, restriction-enzyme-like fold Gferi_RS12010 7d09b999b02773edc7253921a21c5193 73 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 4 69 1.8E-16 T 11-11-2016 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 Gferi_RS18860 84c7d3be8046bb332799970f8fc54341 300 Pfam PF13349 Putative adhesin 56 299 1.4E-33 T 11-11-2016 IPR025164 Putative adhesin Gferi_RS13820 1c36dec3f32275b346be8274e0a22fa8 94 Gene3D G3DSA:1.10.357.10 3 94 6.9E-14 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 Gferi_RS13820 1c36dec3f32275b346be8274e0a22fa8 94 SUPERFAMILY SSF48498 3 94 1.69E-15 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal Gferi_RS17045 5d083c8c0418fda82b72c72f89ab7dc6 130 Pfam PF04324 BFD-like [2Fe-2S] binding domain 41 94 1.1E-16 T 11-11-2016 IPR007419 BFD-like [2Fe-2S]-binding domain Gferi_RS16200 e9245682a776f4b0f4711739451144af 369 Pfam PF02653 Branched-chain amino acid transport system / permease component 62 338 1.4E-47 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS09940 52cf9dd16b906bb0c1dc86ce11f53351 115 Pfam PF12986 Domain of unknown function (DUF3870) 10 103 5.5E-31 T 11-11-2016 IPR024617 Domain of unknown function DUF3870 Gferi_RS09695 6e4bfb8a07d690d2a8d456b1135acb00 155 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 10 150 9.2E-22 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 Gferi_RS00190 2e7b742b039b92bdad2394731a10966e 360 Pfam PF12982 Protein of unknown function (DUF3866) 32 349 1.1E-134 T 11-11-2016 IPR024479 Protein of unknown function DUF3866 Gferi_RS22965 5a5df896cba1e1894661f1b75dd5fed6 66 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 9 62 2.1E-9 T 11-11-2016 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 Gferi_RS00480 2bba55306c0fc4568532d45b6488d9ee 258 Pfam PF02596 Uncharacterised ArCR, COG2043 10 216 7.5E-49 T 11-11-2016 IPR003748 Protein of unknown function DUF169 Gferi_RS25350 a9cc420ef8f718777b39a8f674fb107f 481 Pfam PF03553 Na+/H+ antiporter family 163 455 4.6E-52 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS25350 a9cc420ef8f718777b39a8f674fb107f 481 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 16 461 1.4E-139 T 11-11-2016 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 Gferi_RS25885 37da1f8082cf31365e2a856854e6d5db 428 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 1 41 2.6E-4 T 11-11-2016 IPR009827 Dicarboxylate carrier MatC N-terminal Gferi_RS25885 37da1f8082cf31365e2a856854e6d5db 428 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 50 167 1.3E-25 T 11-11-2016 IPR009827 Dicarboxylate carrier MatC N-terminal Gferi_RS25765 7994c8a2b0feef98d8631bff056d1eac 67 Pfam PF07870 Protein of unknown function (DUF1657) 8 53 7.9E-11 T 11-11-2016 IPR012452 Protein of unknown function DUF1657 Gferi_RS12365 15f2f691231c076cd50bda4a9d042330 723 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 3 225 2.5E-46 T 11-11-2016 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Gferi_RS11935 828e7c2ca0a1104aa28e28803bae0740 366 Pfam PF12725 Protein of unknown function (DUF3810) 37 358 5.5E-100 T 11-11-2016 IPR024294 Protein of unknown function DUF3810 Gferi_RS10890 37da9977ea0efe16311c739503d27b8e 312 Pfam PF03547 Membrane transport protein 5 152 3.9E-19 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Gferi_RS10890 37da9977ea0efe16311c739503d27b8e 312 Pfam PF03547 Membrane transport protein 166 306 2.9E-14 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Gferi_RS11675 30ce3956bffef72106b00cf4e5a76c5e 467 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 7 457 7.0E-154 T 11-11-2016 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 Gferi_RS11675 30ce3956bffef72106b00cf4e5a76c5e 467 Pfam PF03553 Na+/H+ antiporter family 161 454 1.1E-61 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Gferi_RS18225 d5a98efcb7d8d88ac0b1c2bd906c02ec 452 Pfam PF07287 Protein of unknown function (DUF1446) 92 315 4.9E-26 T 11-11-2016 IPR010839 Protein of unknown function DUF1446 Gferi_RS26505 35dd98e402181994d41753d1ce6bf7fa 184 Pfam PF07799 Protein of unknown function (DUF1643) 22 158 2.0E-33 T 11-11-2016 IPR012441 Protein of unknown function DUF1643 Gferi_RS17345 b9c5a38fa9863e949546c0678f85c6fe 400 Pfam PF07907 YibE/F-like protein 128 366 5.7E-77 T 11-11-2016 IPR012507 YibE/F-like Gferi_RS05880 f6c5abb596f109037aa68f398ec4fb54 142 Pfam PF07670 Nucleoside recognition 19 104 6.2E-9 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS24005 272ee36571d25f102f0dee299ba8fa1c 147 Pfam PF06803 Protein of unknown function (DUF1232) 37 71 1.1E-11 T 11-11-2016 IPR010652 Protein of unknown function DUF1232 Gferi_RS25110 099d0d01e902375a73eb4309344760c9 245 Pfam PF03692 Putative zinc- or iron-chelating domain 35 117 4.7E-7 T 11-11-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein Gferi_RS21265 6880222741aae0245f0dfe3221434ef2 149 Pfam PF13701 Transposase DDE domain group 1 48 146 8.7E-11 T 11-11-2016 IPR025668 Transposase DDE domain Gferi_RS17760 23f28bed9754ffaa177b6bd64fb61bf4 451 Pfam PF08378 Nuclease-related domain 52 151 6.1E-15 T 11-11-2016 IPR011528 Nuclease-related domain, NERD Gferi_RS10475 5640e345da22681c019453c573af85fa 245 Pfam PF04474 Protein of unknown function (DUF554) 16 233 7.1E-83 T 11-11-2016 IPR007563 Protein of unknown function DUF554 Gferi_RS15905 b3f3f7c0cfa9ed069d98124a1cfaf129 232 PIRSF PIRSF034981 1 222 4.1E-8 T 11-11-2016 IPR013372 Ethanolamine utilization, putative Gferi_RS16060 d2a6164d35e1b983b6e1478c53873b5b 69 Pfam PF12645 Helix-turn-helix domain 4 57 5.5E-13 T 11-11-2016 IPR024760 Helix-turn-helix, conjugative transposon-like Gferi_RS21570 c13de3e8cfbaf736ca93684c666f2afc 166 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 25 152 2.7E-32 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component Gferi_RS04745 b16a150c1f1f4ae04715fa986623a468 114 Gene3D G3DSA:3.40.50.300 30 69 5.0E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS04745 b16a150c1f1f4ae04715fa986623a468 114 SUPERFAMILY SSF52540 24 81 2.26E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase Gferi_RS22420 2b0bf5a306314bb39cb78d7f40d30ab6 471 Pfam PF03606 C4-dicarboxylate anaerobic carrier 17 464 9.9E-86 T 11-11-2016 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 Gferi_RS27065 ae72224b61d5071aeaec9961e4c722c7 228 Pfam PF06271 RDD family 18 147 1.3E-21 T 11-11-2016 IPR010432 RDD Gferi_RS08165 00fc7eda1cc453d953f9863ef16fbb16 242 Pfam PF02361 Cobalt transport protein 5 215 1.2E-28 T 11-11-2016 IPR003339 ABC/ECF transporter, transmembrane component Gferi_RS25395 e4fd1de302573309cd5157341a2f40ad 76 Pfam PF13031 Protein of unknown function (DUF3892) 6 74 4.6E-21 T 11-11-2016 IPR024997 Protein of unknown function DUF3892 Gferi_RS09615 213c7726890722ce26932c107086d518 430 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 47 422 3.5E-43 T 11-11-2016 IPR010327 FldB/FldC dehydratase alpha/beta subunit Gferi_RS09115 9a2ed02cb49d6fb884a31a85ad244680 168 Gene3D G3DSA:3.10.450.50 49 159 1.5E-4 T 11-11-2016 IPR032710 NTF2-like domain Gferi_RS07540 65410d4926131560bdf6473ef7666c4e 162 Pfam PF04308 Ribonuclease H-like 13 154 2.7E-45 T 11-11-2016 IPR007405 Bacteriophage KVP40, Orf299 Gferi_RS20515 4257d1a92f1a618bc934d66c742f63f8 450 Pfam PF04932 O-Antigen ligase 243 373 2.0E-16 T 11-11-2016 IPR007016 O-antigen ligase-related Gferi_RS04575 1a1d81cbe68b2af88d3498a06a5e8c91 521 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 14 497 6.6E-121 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 Gferi_RS11500 8a5fc45ee3584440b194eb15001741a7 202 Pfam PF00395 S-layer homology domain 155 190 0.0029 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11500 8a5fc45ee3584440b194eb15001741a7 202 Pfam PF00395 S-layer homology domain 98 140 8.8E-12 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS11500 8a5fc45ee3584440b194eb15001741a7 202 Pfam PF00395 S-layer homology domain 50 76 8.0E-4 T 11-11-2016 IPR001119 S-layer homology domain Gferi_RS13310 98fe7689344049e874c692cd119db981 89 Pfam PF01169 Uncharacterized protein family UPF0016 7 81 9.3E-22 T 11-11-2016 IPR001727 Gdt1 family GO:0032472 Gferi_RS07110 6ff4585bca065dda4e38d33851335aa5 359 Gene3D G3DSA:1.10.10.60 198 220 8.9E-4 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 Gferi_RS04215 f777310df87a5e801a50be54bc78f717 328 Pfam PF02517 CAAX protease self-immunity 133 218 2.1E-16 T 11-11-2016 IPR003675 CAAX amino terminal protease GO:0016020 Gferi_RS00395 6cfa1762ad4c42dff38bf15c86dae46b 182 Pfam PF05137 Fimbrial assembly protein (PilN) 107 176 6.8E-9 T 11-11-2016 IPR007813 Fimbrial assembly PilN Gferi_RS10845 598585c4c90be0e90d14a6ebdd604d88 65 Pfam PF11213 Protein of unknown function (DUF3006) 3 64 1.7E-19 T 11-11-2016 IPR021377 Protein of unknown function DUF3006 Gferi_RS18230 8411342f86b53d8f2e74cc4d09bfe739 100 Pfam PF14330 Domain of unknown function (DUF4387) 5 97 4.4E-29 T 11-11-2016 IPR025496 Protein of unknown function DUF4387 Gferi_RS05460 0dfbbec9c8948c030a4793cc5fc7b799 179 Pfam PF07670 Nucleoside recognition 48 147 6.6E-7 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Gferi_RS22235 e20f2fb280d831d9600f7344e9effd7c 255 ProDom PD313455 YFJL PSPB19' PRECURSOR TRANSPORTER SIGNAL 10 187 2.0E-22 T 11-11-2016 IPR020523 Uncharacterised protein family, YfjL Gferi_RS10460 3353efe54dcbaed372fbba821bf42f88 408 Pfam PF12791 Anti-sigma factor N-terminus 8 62 1.1E-9 T 11-11-2016 IPR024449 Anti-sigma factor RsgI, N-terminal Gferi_RS13180 f84c765ca240f6814e94ae5a7607ae12 351 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 316 1.5E-42 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 Gferi_RS16995 a15c915158f5bc0125eb7ac9217c0fa0 204 Pfam PF06042 Nucleotidyltransferase 36 199 1.7E-51 T 11-11-2016 IPR009267 Putative nucleotidyltransferase Gferi_RS26900 c7e5f9d3e2d9db10700318fb68d7fff4 100 Pfam PF03956 Membrane protein of unknown function (DUF340) 8 88 7.6E-7 T 11-11-2016 IPR005642 Lysine exporter LysO Gferi_RS17940 5e33e514d69e635086cd2aa6660e70d3 249 TIGRFAM TIGR03172 TIGR03172: putative selenium-dependent hydroxylase accessory protein YqeC 17 237 2.2E-28 T 11-11-2016 IPR017587 Putative selenium-dependent hydroxylase accessory protein YqeC Gferi_RS22380 a75fee1ba280c3d5ec375186b6771779 253 Pfam PF02361 Cobalt transport protein 11 217 8.3E-29 T 11-11-2016 IPR003339 ABC/ECF transporter, transmembrane component Gferi_RS24915 ecdd4ad37e517bb4ef2d48f1c288a97e 213 Pfam PF10114 Sensory domain found in PocR 7 167 8.9E-46 T 11-11-2016 IPR018771 PocR domain Gferi_RS14270 de2cdc99a78ff1f6e3c762f79e2ff121 277 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 44 167 1.5E-28 T 11-11-2016 IPR007621 TPM domain Gferi_RS22850 d4540932f2fee0b7c6fbd881be50c834 502 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 436 1.1E-154 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane Gferi_RS09955 00e8193d1e21ee02f02f632f65577656 279 Pfam PF11299 Protein of unknown function (DUF3100) 22 253 7.2E-97 T 11-11-2016 IPR021450 Protein of unknown function DUF3100 Gferi_RS06290 53b7777a13de95bcebd4c9fd913c0baa 227 Pfam PF12654 Domain of unknown function (DUF3786) 30 201 1.1E-52 T 11-11-2016 IPR024264 Domain of unknown function DUF3786 Gferi_RS00770 2bec3641f6e464e38bc2f38b670ac02e 264 Pfam PF01148 Cytidylyltransferase family 3 259 1.7E-56 T 11-11-2016 Gferi_RS19420 03fb548dd09fd8d1269656b0b4db70b9 164 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 157 1.9E-18 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component