locus-tag class description AY555_RS00035 PF00154 recA bacterial DNA recombination protein AY555_RS00040 PF00072 Response regulator receiver domain AY555_RS00040 PF13188 PAS domain AY555_RS00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS00040 PF08448 PAS fold AY555_RS00040 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS00045 PF01312 FlhB HrpN YscU SpaS Family AY555_RS00050 PF01311 Bacterial export proteins, family 1 AY555_RS00055 PF01313 Bacterial export proteins, family 3 AY555_RS00060 PF02049 Flagellar hook-basal body complex protein FliE AY555_RS00065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AY555_RS00065 PF00460 Flagella basal body rod protein AY555_RS00075 PF01312 FlhB HrpN YscU SpaS Family AY555_RS00090 PF00813 FliP family AY555_RS00095 PF01037 Lrp/AsnC ligand binding domain AY555_RS00105 PF13677 Membrane MotB of proton-channel complex MotA/MotB AY555_RS00105 PF00691 OmpA family AY555_RS00120 PF00072 Response regulator receiver domain AY555_RS00135 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AY555_RS00135 PF02154 Flagellar motor switch protein FliM AY555_RS00145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AY555_RS00145 PF00460 Flagella basal body rod protein AY555_RS00150 PF00460 Flagella basal body rod protein AY555_RS00150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AY555_RS00155 PF13144 Chaperone for flagella basal body P-ring formation AY555_RS00160 PF02107 Flagellar L-ring protein AY555_RS00170 PF01258 Prokaryotic dksA/traR C4-type zinc finger AY555_RS00175 PF10768 Class II flagellar assembly regulator AY555_RS00180 PF02119 Flagellar P-ring protein AY555_RS00220 PF07378 Flagellar protein FlbT AY555_RS00225 PF00700 Bacterial flagellin C-terminal helical region AY555_RS00225 PF00669 Bacterial flagellin N-terminal helical region AY555_RS00230 PF18755 Restriction Enzyme Adenine Methylase Associated AY555_RS00230 PF01555 DNA methylase AY555_RS00235 PF01351 Ribonuclease HII AY555_RS00240 PF00999 Sodium/hydrogen exchanger family AY555_RS00245 PF03601 Conserved hypothetical protein 698 AY555_RS00250 PF10145 Phage-related minor tail protein AY555_RS00250 PF01551 Peptidase family M23 AY555_RS00250 PF01464 Transglycosylase SLT domain AY555_RS00255 PF03167 Uracil DNA glycosylase superfamily AY555_RS00270 PF00288 GHMP kinases N terminal domain AY555_RS00270 PF08544 GHMP kinases C terminal AY555_RS00290 PF04023 FeoA domain AY555_RS00295 PF07670 Nucleoside recognition AY555_RS00295 PF02421 Ferrous iron transport protein B AY555_RS00295 PF07664 Ferrous iron transport protein B C terminus AY555_RS00315 PF01053 Cys/Met metabolism PLP-dependent enzyme AY555_RS00320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS00320 PF08269 Cache domain AY555_RS00340 PF00970 Oxidoreductase FAD-binding domain AY555_RS00340 PF00175 Oxidoreductase NAD-binding domain AY555_RS00345 PF03313 Serine dehydratase alpha chain AY555_RS00345 PF03315 Serine dehydratase beta chain AY555_RS00355 PF01523 Putative modulator of DNA gyrase AY555_RS00360 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS00360 PF00989 PAS fold AY555_RS00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS00365 PF02628 Cytochrome oxidase assembly protein AY555_RS00380 PF03788 LrgA family AY555_RS00385 PF04172 LrgB-like family AY555_RS00390 PF08212 Lipocalin-like domain AY555_RS00395 PF01515 Phosphate acetyl/butaryl transferase AY555_RS00395 PF07085 DRTGG domain AY555_RS00400 PF00871 Acetokinase family AY555_RS00405 PF04055 Radical SAM superfamily AY555_RS00410 PF01228 Glycine radical AY555_RS00410 PF02901 Pyruvate formate lyase-like AY555_RS00420 PF00072 Response regulator receiver domain AY555_RS00420 PF04397 LytTr DNA-binding domain AY555_RS00425 PF07694 5TMR of 5TMR-LYT AY555_RS00425 PF06580 Histidine kinase AY555_RS00440 PF01565 FAD binding domain AY555_RS00440 PF02913 FAD linked oxidases, C-terminal domain AY555_RS00450 PF03481 Putative GTP-binding controlling metal-binding AY555_RS00450 PF01300 Telomere recombination AY555_RS00455 PF00459 Inositol monophosphatase family AY555_RS00470 PF00883 Cytosol aminopeptidase family, catalytic domain AY555_RS00470 PF02789 Cytosol aminopeptidase family, N-terminal domain AY555_RS00475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AY555_RS00475 PF02770 Acyl-CoA dehydrogenase, middle domain AY555_RS00475 PF12806 Acetyl-CoA dehydrogenase C-terminal like AY555_RS00475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AY555_RS00490 PF03739 Lipopolysaccharide export system permease LptF/LptG AY555_RS00495 PF04453 LPS transport system D AY555_RS00500 PF09312 SurA N-terminal domain AY555_RS00505 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AY555_RS00510 PF00398 Ribosomal RNA adenine dimethylase AY555_RS00515 PF00625 Guanylate kinase AY555_RS00520 PF08340 Domain of unknown function (DUF1732) AY555_RS00520 PF03755 YicC-like family, N-terminal region AY555_RS00535 PF00563 EAL domain AY555_RS00535 PF03707 Bacterial signalling protein N terminal repeat AY555_RS00535 PF00990 Diguanylate cyclase, GGDEF domain AY555_RS00565 PF01926 50S ribosome-binding GTPase AY555_RS00565 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AY555_RS00575 PF01544 CorA-like Mg2+ transporter protein AY555_RS00580 PF01513 ATP-NAD kinase AY555_RS00590 PF01180 Dihydroorotate dehydrogenase AY555_RS00605 PF00850 Histone deacetylase domain AY555_RS00610 PF00462 Glutaredoxin AY555_RS00615 PF00156 Phosphoribosyl transferase domain AY555_RS00625 PF12697 Alpha/beta hydrolase family AY555_RS00625 PF08241 Methyltransferase domain AY555_RS00630 PF17746 SfsA N-terminal OB domain AY555_RS00630 PF03749 Sugar fermentation stimulation protein RE domain AY555_RS00635 PF00557 Metallopeptidase family M24 AY555_RS00640 PF04002 RadC-like JAB domain AY555_RS00650 PF00004 ATPase family associated with various cellular activities (AAA) AY555_RS00650 PF07724 AAA domain (Cdc48 subfamily) AY555_RS00650 PF10431 C-terminal, D2-small domain, of ClpB protein AY555_RS00650 PF02861 Clp amino terminal domain, pathogenicity island component AY555_RS00650 PF17871 AAA lid domain AY555_RS00655 PF02617 ATP-dependent Clp protease adaptor protein ClpS AY555_RS00675 PF00768 D-alanyl-D-alanine carboxypeptidase AY555_RS00675 PF07943 Penicillin-binding protein 5, C-terminal domain AY555_RS00680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AY555_RS00680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AY555_RS00680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AY555_RS00680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AY555_RS00685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AY555_RS00685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AY555_RS00685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AY555_RS00690 PF00483 Nucleotidyl transferase AY555_RS00735 PF00072 Response regulator receiver domain AY555_RS00750 PF01323 DSBA-like thioredoxin domain AY555_RS00755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AY555_RS00755 PF02770 Acyl-CoA dehydrogenase, middle domain AY555_RS00755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AY555_RS00760 PF00484 Carbonic anhydrase AY555_RS00765 PF02803 Thiolase, C-terminal domain AY555_RS00765 PF00108 Thiolase, N-terminal domain AY555_RS00785 PF03099 Biotin/lipoate A/B protein ligase family AY555_RS00795 PF02774 Semialdehyde dehydrogenase, dimerisation domain AY555_RS00795 PF01118 Semialdehyde dehydrogenase, NAD binding domain AY555_RS00800 PF04279 Intracellular septation protein A AY555_RS00815 PF13419 Haloacid dehalogenase-like hydrolase AY555_RS00820 PF00849 RNA pseudouridylate synthase AY555_RS00820 PF01479 S4 domain AY555_RS00825 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AY555_RS00830 PF12002 MgsA AAA+ ATPase C terminal AY555_RS00830 PF00004 ATPase family associated with various cellular activities (AAA) AY555_RS00830 PF16193 AAA C-terminal domain AY555_RS00835 PF13180 PDZ domain AY555_RS00835 PF17820 PDZ domain AY555_RS00840 PF01196 Ribosomal protein L17 AY555_RS00845 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AY555_RS00845 PF01000 RNA polymerase Rpb3/RpoA insert domain AY555_RS00845 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AY555_RS00850 PF00411 Ribosomal protein S11 AY555_RS00855 PF00416 Ribosomal protein S13/S18 AY555_RS00860 PF05191 Adenylate kinase, active site lid AY555_RS00865 PF00344 SecY translocase AY555_RS00870 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AY555_RS00875 PF00327 Ribosomal protein L30p/L7e AY555_RS00880 PF00333 Ribosomal protein S5, N-terminal domain AY555_RS00880 PF03719 Ribosomal protein S5, C-terminal domain AY555_RS00885 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AY555_RS00890 PF00347 Ribosomal protein L6 AY555_RS00895 PF00410 Ribosomal protein S8 AY555_RS00900 PF00253 Ribosomal protein S14p/S29e AY555_RS00905 PF00281 Ribosomal protein L5 AY555_RS00905 PF00673 ribosomal L5P family C-terminus AY555_RS00910 PF00467 KOW motif AY555_RS00910 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AY555_RS00915 PF00238 Ribosomal protein L14p/L23e AY555_RS00920 PF00366 Ribosomal protein S17 AY555_RS00925 PF00831 Ribosomal L29 protein AY555_RS00930 PF00252 Ribosomal protein L16p/L10e AY555_RS00935 PF00189 Ribosomal protein S3, C-terminal domain AY555_RS00935 PF07650 KH domain AY555_RS00940 PF00237 Ribosomal protein L22p/L17e AY555_RS00945 PF00203 Ribosomal protein S19 AY555_RS00950 PF00181 Ribosomal Proteins L2, RNA binding domain AY555_RS00950 PF03947 Ribosomal Proteins L2, C-terminal domain AY555_RS00955 PF00276 Ribosomal protein L23 AY555_RS00960 PF00573 Ribosomal protein L4/L1 family AY555_RS00965 PF00297 Ribosomal protein L3 AY555_RS00970 PF00338 Ribosomal protein S10p/S20e AY555_RS00975 PF00009 Elongation factor Tu GTP binding domain AY555_RS00975 PF03143 Elongation factor Tu C-terminal domain AY555_RS00975 PF03144 Elongation factor Tu domain 2 AY555_RS00980 PF00009 Elongation factor Tu GTP binding domain AY555_RS00980 PF03144 Elongation factor Tu domain 2 AY555_RS00980 PF03764 Elongation factor G, domain IV AY555_RS00980 PF00679 Elongation factor G C-terminus AY555_RS00980 PF14492 Elongation Factor G, domain II AY555_RS00985 PF00177 Ribosomal protein S7p/S5e AY555_RS00990 PF00164 Ribosomal protein S12/S23 AY555_RS00995 PF04998 RNA polymerase Rpb1, domain 5 AY555_RS00995 PF05000 RNA polymerase Rpb1, domain 4 AY555_RS00995 PF04983 RNA polymerase Rpb1, domain 3 AY555_RS00995 PF04997 RNA polymerase Rpb1, domain 1 AY555_RS00995 PF00623 RNA polymerase Rpb1, domain 2 AY555_RS01000 PF04560 RNA polymerase Rpb2, domain 7 AY555_RS01000 PF00562 RNA polymerase Rpb2, domain 6 AY555_RS01000 PF04565 RNA polymerase Rpb2, domain 3 AY555_RS01000 PF04561 RNA polymerase Rpb2, domain 2 AY555_RS01000 PF04563 RNA polymerase beta subunit AY555_RS01000 PF10385 RNA polymerase beta subunit external 1 domain AY555_RS01005 PF00542 Ribosomal protein L7/L12 C-terminal domain AY555_RS01005 PF16320 Ribosomal protein L7/L12 dimerisation domain AY555_RS01010 PF00466 Ribosomal protein L10 AY555_RS01015 PF00687 Ribosomal protein L1p/L10e family AY555_RS01020 PF00298 Ribosomal protein L11, RNA binding domain AY555_RS01020 PF03946 Ribosomal protein L11, N-terminal domain AY555_RS01025 PF02357 Transcription termination factor nusG AY555_RS01025 PF00467 KOW motif AY555_RS01030 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AY555_RS01040 PF00009 Elongation factor Tu GTP binding domain AY555_RS01040 PF03144 Elongation factor Tu domain 2 AY555_RS01040 PF03143 Elongation factor Tu C-terminal domain AY555_RS01055 PF08032 RNA 2'-O ribose methyltransferase substrate binding AY555_RS01055 PF00588 SpoU rRNA Methylase family AY555_RS01080 PF01040 UbiA prenyltransferase family AY555_RS01095 PF01206 Sulfurtransferase TusA AY555_RS01100 PF00581 Rhodanese-like domain AY555_RS01100 PF11127 Protein of unknown function (DUF2892) AY555_RS01110 PF12802 MarR family AY555_RS01120 PF00317 Ribonucleotide reductase, all-alpha domain AY555_RS01120 PF08343 Ribonucleotide reductase N-terminal AY555_RS01120 PF02867 Ribonucleotide reductase, barrel domain AY555_RS01125 PF00268 Ribonucleotide reductase, small chain AY555_RS01130 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AY555_RS01140 PF00557 Metallopeptidase family M24 AY555_RS01140 PF01321 Creatinase/Prolidase N-terminal domain AY555_RS01160 PF00580 UvrD/REP helicase N-terminal domain AY555_RS01160 PF13361 UvrD-like helicase C-terminal domain AY555_RS01165 PF02965 Vitamin B12 dependent methionine synthase, activation domain AY555_RS01165 PF00809 Pterin binding enzyme AY555_RS01165 PF02574 Homocysteine S-methyltransferase AY555_RS01165 PF02310 B12 binding domain AY555_RS01165 PF02607 B12 binding domain AY555_RS01170 PF02219 Methylenetetrahydrofolate reductase AY555_RS01175 PF01209 ubiE/COQ5 methyltransferase family AY555_RS01230 PF14850 DNA-binding domain of Proline dehydrogenase AY555_RS01230 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AY555_RS01230 PF01619 Proline dehydrogenase AY555_RS01230 PF00171 Aldehyde dehydrogenase family AY555_RS01235 PF01869 BadF/BadG/BcrA/BcrD ATPase family AY555_RS01240 PF12848 ABC transporter AY555_RS01240 PF00005 ABC transporter AY555_RS01250 PF00108 Thiolase, N-terminal domain AY555_RS01250 PF02803 Thiolase, C-terminal domain AY555_RS01260 PF13188 PAS domain AY555_RS01260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS01260 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS01260 PF00989 PAS fold AY555_RS01265 PF04546 Sigma-70, non-essential region AY555_RS01265 PF03979 Sigma-70 factor, region 1.1 AY555_RS01265 PF04542 Sigma-70 region 2 AY555_RS01265 PF04539 Sigma-70 region 3 AY555_RS01265 PF04545 Sigma-70, region 4 AY555_RS01265 PF00140 Sigma-70 factor, region 1.2 AY555_RS01270 PF01807 CHC2 zinc finger AY555_RS01270 PF08275 DNA primase catalytic core, N-terminal domain AY555_RS01270 PF13662 Toprim domain AY555_RS01270 PF10410 DnaB-helicase binding domain of primase AY555_RS01270 PF08278 DNA primase DnaG DnaB-binding AY555_RS01285 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AY555_RS01285 PF00117 Glutamine amidotransferase class-I AY555_RS01290 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AY555_RS01290 PF02142 MGS-like domain AY555_RS01290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AY555_RS01295 PF03449 Transcription elongation factor, N-terminal AY555_RS01295 PF01272 Transcription elongation factor, GreA/GreB, C-term AY555_RS01300 PF02705 K+ potassium transporter AY555_RS01305 PF01037 Lrp/AsnC ligand binding domain AY555_RS01310 PF00578 AhpC/TSA family AY555_RS01310 PF10417 C-terminal domain of 1-Cys peroxiredoxin AY555_RS01315 PF07992 Pyridine nucleotide-disulphide oxidoreductase AY555_RS01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AY555_RS01320 PF03466 LysR substrate binding domain AY555_RS01335 PF02167 Cytochrome C1 family AY555_RS01340 PF00032 Cytochrome b(C-terminal)/b6/petD AY555_RS01340 PF00033 Cytochrome b/b6/petB AY555_RS01345 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AY555_RS01345 PF00355 Rieske [2Fe-2S] domain AY555_RS01350 PF00588 SpoU rRNA Methylase family AY555_RS01365 PF02348 Cytidylyltransferase AY555_RS01370 PF01817 Chorismate mutase type II AY555_RS01370 PF00800 Prephenate dehydratase AY555_RS01375 PF02875 Mur ligase family, glutamate ligase domain AY555_RS01375 PF08245 Mur ligase middle domain AY555_RS01380 PF17848 Acetyl-coA carboxylase zinc finger domain AY555_RS01380 PF01039 Carboxyl transferase domain AY555_RS01385 PF00290 Tryptophan synthase alpha chain AY555_RS01390 PF00291 Pyridoxal-phosphate dependent enzyme AY555_RS01415 PF00183 Hsp90 protein AY555_RS01420 PF13426 PAS domain AY555_RS01420 PF00672 HAMP domain AY555_RS01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS01420 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS01430 PF02445 Quinolinate synthetase A protein AY555_RS01435 PF00890 FAD binding domain AY555_RS01435 PF02910 Fumarate reductase flavoprotein C-term AY555_RS01440 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AY555_RS01440 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AY555_RS01450 PF02566 OsmC-like protein AY555_RS01455 PF00180 Isocitrate/isopropylmalate dehydrogenase AY555_RS01460 PF03641 Possible lysine decarboxylase AY555_RS01465 PF01322 Cytochrome C' AY555_RS01475 PF00011 Hsp20/alpha crystallin family AY555_RS01480 PF00140 Sigma-70 factor, region 1.2 AY555_RS01480 PF04545 Sigma-70, region 4 AY555_RS01480 PF04542 Sigma-70 region 2 AY555_RS01485 PF00672 HAMP domain AY555_RS01485 PF16527 Two-component sensor protein CpxA, periplasmic domain AY555_RS01485 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS01485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS01490 PF00486 Transcriptional regulatory protein, C terminal AY555_RS01490 PF00072 Response regulator receiver domain AY555_RS01495 PF12802 MarR family AY555_RS01500 PF01266 FAD dependent oxidoreductase AY555_RS01510 PF13416 Bacterial extracellular solute-binding protein AY555_RS01515 PF00005 ABC transporter AY555_RS01515 PF08402 TOBE domain AY555_RS01520 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS01525 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS01530 PF01177 Asp/Glu/Hydantoin racemase AY555_RS01540 PF05981 CreA protein AY555_RS01555 PF02152 Dihydroneopterin aldolase AY555_RS01560 PF12826 Helix-hairpin-helix motif AY555_RS01560 PF02151 UvrB/uvrC motif AY555_RS01560 PF08459 UvrC Helix-hairpin-helix N-terminal AY555_RS01560 PF01541 GIY-YIG catalytic domain AY555_RS01565 PF01066 CDP-alcohol phosphatidyltransferase AY555_RS01570 PF00749 tRNA synthetases class I (E and Q), catalytic domain AY555_RS01595 PF02666 Phosphatidylserine decarboxylase AY555_RS01600 PF01066 CDP-alcohol phosphatidyltransferase AY555_RS01605 PF00589 Phage integrase family AY555_RS01605 PF02899 Phage integrase, N-terminal SAM-like domain AY555_RS01620 PF01202 Shikimate kinase AY555_RS01625 PF01761 3-dehydroquinate synthase AY555_RS01630 PF03471 Transporter associated domain AY555_RS01630 PF00571 CBS domain AY555_RS01630 PF01595 Cyclin M transmembrane N-terminal domain AY555_RS01640 PF02881 SRP54-type protein, helical bundle domain AY555_RS01640 PF00448 SRP54-type protein, GTPase domain AY555_RS01640 PF02978 Signal peptide binding domain AY555_RS01645 PF00886 Ribosomal protein S16 AY555_RS01650 PF01782 RimM N-terminal domain AY555_RS01650 PF05239 PRC-barrel domain AY555_RS01655 PF01746 tRNA (Guanine-1)-methyltransferase AY555_RS01660 PF01245 Ribosomal protein L19 AY555_RS01670 PF00571 CBS domain AY555_RS01670 PF01769 Divalent cation transporter AY555_RS01670 PF03448 MgtE intracellular N domain AY555_RS01680 PF01722 BolA-like protein AY555_RS01685 PF00684 DnaJ central domain AY555_RS01685 PF01556 DnaJ C terminal domain AY555_RS01685 PF00226 DnaJ domain AY555_RS01690 PF07728 AAA domain (dynein-related subfamily) AY555_RS01690 PF12556 Cobaltochelatase CobS subunit N terminal AY555_RS01690 PF08406 CbbQ/NirQ/NorQ C-terminal AY555_RS01695 PF06213 Cobalamin biosynthesis protein CobT AY555_RS01695 PF11775 Cobalamin biosynthesis protein CobT VWA domain AY555_RS01705 PF00830 Ribosomal L28 family AY555_RS01730 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AY555_RS01740 PF13180 PDZ domain AY555_RS01740 PF17820 PDZ domain AY555_RS01750 PF12221 Bacterial membrane protein N terminal AY555_RS01750 PF01145 SPFH domain / Band 7 family AY555_RS01755 PF10609 NUBPL iron-transfer P-loop NTPase AY555_RS01760 PF13520 Amino acid permease AY555_RS01765 PF03315 Serine dehydratase beta chain AY555_RS01765 PF03313 Serine dehydratase alpha chain AY555_RS01770 PF00156 Phosphoribosyl transferase domain AY555_RS01785 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AY555_RS01790 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AY555_RS01800 PF00075 RNase H AY555_RS01805 PF01636 Phosphotransferase enzyme family AY555_RS01810 PF02401 LytB protein AY555_RS01815 PF00664 ABC transporter transmembrane region AY555_RS01815 PF00005 ABC transporter AY555_RS01825 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AY555_RS01830 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AY555_RS01840 PF01575 MaoC like domain AY555_RS01850 PF08242 Methyltransferase domain AY555_RS01860 PF14437 MafB19-like deaminase AY555_RS01865 PF07722 Peptidase C26 AY555_RS01870 PF01479 S4 domain AY555_RS01870 PF00849 RNA pseudouridylate synthase AY555_RS01880 PF08331 Domain of unknown function (DUF1730) AY555_RS01885 PF01381 Helix-turn-helix AY555_RS01890 PF07879 PHB/PHA accumulation regulator DNA-binding domain AY555_RS01890 PF05233 PHB accumulation regulatory domain AY555_RS01900 PF00561 alpha/beta hydrolase fold AY555_RS01905 PF02803 Thiolase, C-terminal domain AY555_RS01905 PF00108 Thiolase, N-terminal domain AY555_RS01915 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AY555_RS01920 PF00497 Bacterial extracellular solute-binding proteins, family 3 AY555_RS01925 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS01930 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS01940 PF02774 Semialdehyde dehydrogenase, dimerisation domain AY555_RS01940 PF01118 Semialdehyde dehydrogenase, NAD binding domain AY555_RS01945 PF00696 Amino acid kinase family AY555_RS01950 PF00202 Aminotransferase class-III AY555_RS01955 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AY555_RS01955 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AY555_RS01970 PF00829 Ribosomal prokaryotic L21 protein AY555_RS01975 PF01016 Ribosomal L27 protein AY555_RS01980 PF01926 50S ribosome-binding GTPase AY555_RS01980 PF01018 GTP1/OBG AY555_RS01985 PF01472 PUA domain AY555_RS01985 PF00696 Amino acid kinase family AY555_RS01990 PF00171 Aldehyde dehydrogenase family AY555_RS01995 PF01467 Cytidylyltransferase-like AY555_RS02005 PF02590 Predicted SPOUT methyltransferase AY555_RS02020 PF00486 Transcriptional regulatory protein, C terminal AY555_RS02020 PF00072 Response regulator receiver domain AY555_RS02025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS02040 PF07690 Major Facilitator Superfamily AY555_RS02045 PF01966 HD domain AY555_RS02050 PF00990 Diguanylate cyclase, GGDEF domain AY555_RS02050 PF13188 PAS domain AY555_RS02050 PF03707 Bacterial signalling protein N terminal repeat AY555_RS02050 PF00563 EAL domain AY555_RS02055 PF03976 Polyphosphate kinase 2 (PPK2) AY555_RS02065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AY555_RS02065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AY555_RS02070 PF00162 Phosphoglycerate kinase AY555_RS02080 PF02774 Semialdehyde dehydrogenase, dimerisation domain AY555_RS02080 PF01118 Semialdehyde dehydrogenase, NAD binding domain AY555_RS02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS02090 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS02095 PF00127 Copper binding proteins, plastocyanin/azurin family AY555_RS02100 PF02631 RecX family AY555_RS02105 PF01061 ABC-2 type transporter AY555_RS02110 PF01430 Hsp33 protein AY555_RS02120 PF00149 Calcineurin-like phosphoesterase AY555_RS02130 PF01370 NAD dependent epimerase/dehydratase family AY555_RS02135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AY555_RS02135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AY555_RS02135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AY555_RS02135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AY555_RS02170 PF01227 GTP cyclohydrolase I AY555_RS02180 PF00561 alpha/beta hydrolase fold AY555_RS02185 PF00072 Response regulator receiver domain AY555_RS02185 PF00196 Bacterial regulatory proteins, luxR family AY555_RS02195 PF02355 Protein export membrane protein AY555_RS02195 PF07549 SecD/SecF GG Motif AY555_RS02205 PF06508 Queuosine biosynthesis protein QueC AY555_RS02255 PF12169 DNA polymerase III subunits gamma and tau domain III AY555_RS02255 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AY555_RS02255 PF12170 DNA polymerase III tau subunit V interacting with alpha AY555_RS02260 PF02575 YbaB/EbfC DNA-binding family AY555_RS02265 PF02132 RecR protein AY555_RS02265 PF13662 Toprim domain AY555_RS02270 PF00313 'Cold-shock' DNA-binding domain AY555_RS02280 PF01078 Magnesium chelatase, subunit ChlI AY555_RS02280 PF13335 Magnesium chelatase, subunit ChlI C-terminal AY555_RS02285 PF04055 Radical SAM superfamily AY555_RS02285 PF00919 Uncharacterized protein family UPF0004 AY555_RS02290 PF02028 BCCT, betaine/carnitine/choline family transporter AY555_RS02295 PF00291 Pyridoxal-phosphate dependent enzyme AY555_RS02295 PF14821 Threonine synthase N terminus AY555_RS02300 PF00675 Insulinase (Peptidase family M16) AY555_RS02300 PF05193 Peptidase M16 inactive domain AY555_RS02305 PF00486 Transcriptional regulatory protein, C terminal AY555_RS02305 PF00072 Response regulator receiver domain AY555_RS02310 PF02562 PhoH-like protein AY555_RS02320 PF04055 Radical SAM superfamily AY555_RS02320 PF06968 Biotin and Thiamin Synthesis associated domain AY555_RS02325 PF03600 Citrate transporter AY555_RS02325 PF02080 TrkA-C domain AY555_RS02340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AY555_RS02345 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS02350 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS02350 PF12911 N-terminal TM domain of oligopeptide transport permease C AY555_RS02355 PF00005 ABC transporter AY555_RS02355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AY555_RS02360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AY555_RS02370 PF02789 Cytosol aminopeptidase family, N-terminal domain AY555_RS02370 PF00883 Cytosol aminopeptidase family, catalytic domain AY555_RS02375 PF16868 NMT1-like family AY555_RS02385 PF00453 Ribosomal protein L20 AY555_RS02390 PF01409 tRNA synthetases class II core domain (F) AY555_RS02390 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AY555_RS02395 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AY555_RS02395 PF01588 Putative tRNA binding domain AY555_RS02395 PF03147 Ferredoxin-fold anticodon binding domain AY555_RS02395 PF03484 tRNA synthetase B5 domain AY555_RS02395 PF03483 B3/4 domain AY555_RS02410 PF01966 HD domain AY555_RS02415 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AY555_RS02420 PF00953 Glycosyl transferase family 4 AY555_RS02425 PF02719 Polysaccharide biosynthesis protein AY555_RS02430 PF16124 RecQ zinc-binding AY555_RS02430 PF09382 RQC domain AY555_RS02430 PF00570 HRDC domain AY555_RS02430 PF00271 Helicase conserved C-terminal domain AY555_RS02430 PF00270 DEAD/DEAH box helicase AY555_RS02435 PF00072 Response regulator receiver domain AY555_RS02435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS02435 PF18415 Histidine kinase receptor ArcB trans-membrane domain AY555_RS02435 PF01627 Hpt domain AY555_RS02435 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS02435 PF00989 PAS fold AY555_RS02445 PF14815 NUDIX domain AY555_RS02445 PF00730 HhH-GPD superfamily base excision DNA repair protein AY555_RS02455 PF00005 ABC transporter AY555_RS02475 PF01612 3'-5' exonuclease AY555_RS02475 PF00476 DNA polymerase family A AY555_RS02475 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AY555_RS02475 PF01367 5'-3' exonuclease, C-terminal SAM fold AY555_RS02485 PF00005 ABC transporter AY555_RS02495 PF13426 PAS domain AY555_RS02495 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS02495 PF00989 PAS fold AY555_RS02495 PF13188 PAS domain AY555_RS02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS02500 PF01523 Putative modulator of DNA gyrase AY555_RS02510 PF01571 Aminomethyltransferase folate-binding domain AY555_RS02510 PF08669 Glycine cleavage T-protein C-terminal barrel domain AY555_RS02515 PF01597 Glycine cleavage H-protein AY555_RS02520 PF02347 Glycine cleavage system P-protein AY555_RS02525 PF00266 Aminotransferase class-V AY555_RS02540 PF03900 Porphobilinogen deaminase, C-terminal domain AY555_RS02540 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AY555_RS02545 PF00814 Glycoprotease family AY555_RS02550 PF16363 GDP-mannose 4,6 dehydratase AY555_RS02555 PF02719 Polysaccharide biosynthesis protein AY555_RS02560 PF02357 Transcription termination factor nusG AY555_RS02560 PF00467 KOW motif AY555_RS02565 PF00483 Nucleotidyl transferase AY555_RS02565 PF01050 Mannose-6-phosphate isomerase AY555_RS02570 PF00534 Glycosyl transferases group 1 AY555_RS02570 PF13477 Glycosyl transferase 4-like AY555_RS02575 PF13537 Glutamine amidotransferase domain AY555_RS02575 PF00733 Asparagine synthase AY555_RS02580 PF13537 Glutamine amidotransferase domain AY555_RS02580 PF00733 Asparagine synthase AY555_RS02590 PF13439 Glycosyltransferase Family 4 AY555_RS02590 PF00534 Glycosyl transferases group 1 AY555_RS02595 PF00535 Glycosyl transferase family 2 AY555_RS02600 PF13439 Glycosyltransferase Family 4 AY555_RS02600 PF00534 Glycosyl transferases group 1 AY555_RS02615 PF08241 Methyltransferase domain AY555_RS02620 PF12323 Helix-turn-helix domain AY555_RS02620 PF07282 Putative transposase DNA-binding domain AY555_RS02620 PF01385 Probable transposase AY555_RS02625 PF00239 Resolvase, N terminal domain AY555_RS02630 PF13537 Glutamine amidotransferase domain AY555_RS02630 PF00733 Asparagine synthase AY555_RS02635 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AY555_RS02635 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AY555_RS02635 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AY555_RS02640 PF01370 NAD dependent epimerase/dehydratase family AY555_RS02655 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AY555_RS02660 PF02224 Cytidylate kinase AY555_RS02665 PF00575 S1 RNA binding domain AY555_RS02670 PF00216 Bacterial DNA-binding protein AY555_RS02680 PF02254 TrkA-N domain AY555_RS02680 PF00999 Sodium/hydrogen exchanger family AY555_RS02710 PF07484 Phage Tail Collar Domain AY555_RS02755 PF00565 Staphylococcal nuclease homologue AY555_RS02775 PF17482 Phage tail sheath C-terminal domain AY555_RS02775 PF04984 Phage tail sheath protein subtilisin-like domain AY555_RS02815 PF04860 Phage portal protein AY555_RS02820 PF03354 Phage Terminase AY555_RS02865 PF01807 CHC2 zinc finger AY555_RS02865 PF08275 DNA primase catalytic core, N-terminal domain AY555_RS02865 PF10410 DnaB-helicase binding domain of primase AY555_RS02960 PF02622 Uncharacterized ACR, COG1678 AY555_RS02980 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AY555_RS02980 PF05221 S-adenosyl-L-homocysteine hydrolase AY555_RS02985 PF13193 AMP-binding enzyme C-terminal domain AY555_RS02985 PF00501 AMP-binding enzyme AY555_RS02990 PF00106 short chain dehydrogenase AY555_RS02995 PF00881 Nitroreductase family AY555_RS03005 PF05088 Bacterial NAD-glutamate dehydrogenase AY555_RS03015 PF07475 HPr Serine kinase C-terminal domain AY555_RS03015 PF02603 HPr Serine kinase N terminus AY555_RS03020 PF03668 P-loop ATPase protein family AY555_RS03025 PF03830 PTS system sorbose subfamily IIB component AY555_RS03025 PF03610 PTS system fructose IIA component AY555_RS03030 PF00381 PTS HPr component phosphorylation site AY555_RS03035 PF00391 PEP-utilising enzyme, mobile domain AY555_RS03035 PF05524 PEP-utilising enzyme, N-terminal AY555_RS03035 PF02896 PEP-utilising enzyme, TIM barrel domain AY555_RS03040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AY555_RS03045 PF00309 Sigma-54 factor, Activator interacting domain (AID) AY555_RS03045 PF04963 Sigma-54 factor, core binding domain AY555_RS03045 PF04552 Sigma-54, DNA binding domain AY555_RS03050 PF00005 ABC transporter AY555_RS03065 PF00571 CBS domain AY555_RS03065 PF01380 SIS domain AY555_RS03080 PF13460 NAD(P)H-binding AY555_RS03085 PF05173 Dihydrodipicolinate reductase, C-terminus AY555_RS03085 PF01113 Dihydrodipicolinate reductase, N-terminus AY555_RS03090 PF00633 Helix-hairpin-helix motif AY555_RS03090 PF00730 HhH-GPD superfamily base excision DNA repair protein AY555_RS03090 PF10576 Iron-sulfur binding domain of endonuclease III AY555_RS03100 PF01106 NifU-like domain AY555_RS03115 PF01925 Sulfite exporter TauE/SafE AY555_RS03120 PF00579 tRNA synthetases class I (W and Y) AY555_RS03125 PF03023 Lipid II flippase MurJ AY555_RS03130 PF01027 Inhibitor of apoptosis-promoting Bax1 AY555_RS03140 PF00005 ABC transporter AY555_RS03145 PF13472 GDSL-like Lipase/Acylhydrolase family AY555_RS03160 PF01327 Polypeptide deformylase AY555_RS03165 PF00551 Formyl transferase AY555_RS03165 PF02911 Formyl transferase, C-terminal domain AY555_RS03170 PF01416 tRNA pseudouridine synthase AY555_RS03175 PF01740 STAS domain AY555_RS03175 PF00916 Sulfate permease family AY555_RS03180 PF00043 Glutathione S-transferase, C-terminal domain AY555_RS03180 PF13417 Glutathione S-transferase, N-terminal domain AY555_RS03200 PF13847 Methyltransferase domain AY555_RS03200 PF10119 Predicted methyltransferase regulatory domain AY555_RS03205 PF13193 AMP-binding enzyme C-terminal domain AY555_RS03205 PF00501 AMP-binding enzyme AY555_RS03205 PF16177 Acetyl-coenzyme A synthetase N-terminus AY555_RS03210 PF00924 Mechanosensitive ion channel AY555_RS03210 PF12795 Mechanosensitive ion channel porin domain AY555_RS03210 PF12794 Mechanosensitive ion channel inner membrane domain 1 AY555_RS03225 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AY555_RS03225 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AY555_RS03235 PF00005 ABC transporter AY555_RS03255 PF03918 Cytochrome C biogenesis protein AY555_RS03260 PF08534 Redoxin AY555_RS03265 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AY555_RS03265 PF01578 Cytochrome C assembly protein AY555_RS03270 PF03100 CcmE AY555_RS03280 PF01578 Cytochrome C assembly protein AY555_RS03285 PF01467 Cytidylyltransferase-like AY555_RS03285 PF00294 pfkB family carbohydrate kinase AY555_RS03290 PF08534 Redoxin AY555_RS03295 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AY555_RS03295 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AY555_RS03300 PF03966 Trm112p-like protein AY555_RS03305 PF00085 Thioredoxin AY555_RS03340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AY555_RS03340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AY555_RS03340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AY555_RS03345 PF01370 NAD dependent epimerase/dehydratase family AY555_RS03370 PF03692 Putative zinc- or iron-chelating domain AY555_RS03380 PF02630 SCO1/SenC AY555_RS03415 PF01329 Pterin 4 alpha carbinolamine dehydratase AY555_RS03420 PF13654 AAA domain AY555_RS03420 PF05362 Lon protease (S16) C-terminal proteolytic domain AY555_RS03430 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AY555_RS03430 PF17854 FtsK alpha domain AY555_RS03430 PF09397 Ftsk gamma domain AY555_RS03430 PF01580 FtsK/SpoIIIE family AY555_RS03435 PF01494 FAD binding domain AY555_RS03440 PF01557 Fumarylacetoacetate (FAA) hydrolase family AY555_RS03455 PF00210 Ferritin-like domain AY555_RS03460 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AY555_RS03460 PF01676 Metalloenzyme superfamily AY555_RS03465 PF01551 Peptidase family M23 AY555_RS03470 PF13180 PDZ domain AY555_RS03470 PF03572 Peptidase family S41 AY555_RS03480 PF00293 NUDIX domain AY555_RS03490 PF00072 Response regulator receiver domain AY555_RS03490 PF00486 Transcriptional regulatory protein, C terminal AY555_RS03495 PF00925 GTP cyclohydrolase II AY555_RS03505 PF01230 HIT domain AY555_RS03510 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AY555_RS03515 PF00595 PDZ domain AY555_RS03520 PF01569 PAP2 superfamily AY555_RS03525 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AY555_RS03535 PF01923 Cobalamin adenosyltransferase AY555_RS03540 PF01012 Electron transfer flavoprotein domain AY555_RS03545 PF00766 Electron transfer flavoprotein FAD-binding domain AY555_RS03545 PF01012 Electron transfer flavoprotein domain AY555_RS03550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AY555_RS03550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AY555_RS03555 PF00196 Bacterial regulatory proteins, luxR family AY555_RS03555 PF03472 Autoinducer binding domain AY555_RS03570 PF01381 Helix-turn-helix AY555_RS03580 PF01569 PAP2 superfamily AY555_RS03585 PF00056 lactate/malate dehydrogenase, NAD binding domain AY555_RS03585 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AY555_RS03595 PF01451 Low molecular weight phosphotyrosine protein phosphatase AY555_RS03605 PF00448 SRP54-type protein, GTPase domain AY555_RS03605 PF02881 SRP54-type protein, helical bundle domain AY555_RS03610 PF00919 Uncharacterized protein family UPF0004 AY555_RS03610 PF04055 Radical SAM superfamily AY555_RS03615 PF01678 Diaminopimelate epimerase AY555_RS03630 PF00037 4Fe-4S binding domain AY555_RS03630 PF11953 Domain of unknown function (DUF3470) AY555_RS03645 PF13603 Leucyl-tRNA synthetase, Domain 2 AY555_RS03645 PF08264 Anticodon-binding domain of tRNA AY555_RS03645 PF00133 tRNA synthetases class I (I, L, M and V) AY555_RS03665 PF02581 Thiamine monophosphate synthase AY555_RS03665 PF17792 ThiD2 family AY555_RS03670 PF01168 Alanine racemase, N-terminal domain AY555_RS03675 PF01025 GrpE AY555_RS03680 PF01628 HrcA protein C terminal domain AY555_RS03695 PF06969 HemN C-terminal domain AY555_RS03695 PF04055 Radical SAM superfamily AY555_RS03700 PF01725 Ham1 family AY555_RS03705 PF01138 3' exoribonuclease family, domain 1 AY555_RS03705 PF03725 3' exoribonuclease family, domain 2 AY555_RS03710 PF06725 3D domain AY555_RS03710 PF03562 MltA specific insert domain AY555_RS03720 PF04186 FxsA cytoplasmic membrane protein AY555_RS03725 PF02556 Preprotein translocase subunit SecB AY555_RS03735 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AY555_RS03735 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AY555_RS03750 PF10396 GTP-binding protein TrmE N-terminus AY555_RS03750 PF12631 MnmE helical domain AY555_RS03750 PF01926 50S ribosome-binding GTPase AY555_RS03755 PF13932 GidA associated domain AY555_RS03755 PF01134 Glucose inhibited division protein A AY555_RS03760 PF02527 rRNA small subunit methyltransferase G AY555_RS03765 PF13614 AAA domain AY555_RS03770 PF02195 ParB-like nuclease domain AY555_RS03770 PF17762 HTH domain found in ParB protein AY555_RS03775 PF01435 Peptidase family M48 AY555_RS03785 PF01808 AICARFT/IMPCHase bienzyme AY555_RS03785 PF02142 MGS-like domain AY555_RS03790 PF01381 Helix-turn-helix AY555_RS03800 PF00227 Proteasome subunit AY555_RS03805 PF07724 AAA domain (Cdc48 subfamily) AY555_RS03805 PF10431 C-terminal, D2-small domain, of ClpB protein AY555_RS03805 PF00004 ATPase family associated with various cellular activities (AAA) AY555_RS03810 PF00929 Exonuclease AY555_RS03815 PF01121 Dephospho-CoA kinase AY555_RS03820 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AY555_RS03820 PF01488 Shikimate / quinate 5-dehydrogenase AY555_RS03820 PF08501 Shikimate dehydrogenase substrate binding domain AY555_RS03825 PF02545 Maf-like protein AY555_RS03830 PF03618 Kinase/pyrophosphorylase AY555_RS03835 PF01208 Uroporphyrinogen decarboxylase (URO-D) AY555_RS03840 PF00762 Ferrochelatase AY555_RS03845 PF03653 Uncharacterised protein family (UPF0093) AY555_RS03850 PF07498 Rho termination factor, N-terminal domain AY555_RS03850 PF07497 Rho termination factor, RNA-binding domain AY555_RS03850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AY555_RS03855 PF03960 ArsC family AY555_RS03860 PF01979 Amidohydrolase family AY555_RS03895 PF13195 Protein of unknown function (DUF4011) AY555_RS03895 PF13087 AAA domain AY555_RS03895 PF13195 Protein of unknown function (DUF4011) AY555_RS03895 PF13087 AAA domain AY555_RS03895 PF13086 AAA domain AY555_RS03895 PF13086 AAA domain AY555_RS03900 PF08548 Peptidase M10 serralysin C terminal AY555_RS03900 PF12708 Pectate lyase superfamily protein AY555_RS03900 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AY555_RS03910 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AY555_RS03910 PF07992 Pyridine nucleotide-disulphide oxidoreductase AY555_RS03915 PF01493 GXGXG motif AY555_RS03915 PF01645 Conserved region in glutamate synthase AY555_RS03915 PF04898 Glutamate synthase central domain AY555_RS03915 PF00310 Glutamine amidotransferases class-II AY555_RS03925 PF00085 Thioredoxin AY555_RS03935 PF02464 Competence-damaged protein AY555_RS03935 PF00994 Probable molybdopterin binding domain AY555_RS03935 PF18146 Damage-inducible protein CinA KH domain AY555_RS03965 PF01475 Ferric uptake regulator family AY555_RS03970 PF05443 ROS/MUCR transcriptional regulator protein AY555_RS03985 PF04715 Anthranilate synthase component I, N terminal region AY555_RS03985 PF00425 chorismate binding enzyme AY555_RS03990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AY555_RS03990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AY555_RS04000 PF17384 RimP C-terminal SH3 domain AY555_RS04000 PF02576 RimP N-terminal domain AY555_RS04005 PF08529 NusA N-terminal domain AY555_RS04005 PF13184 NusA-like KH domain AY555_RS04005 PF00575 S1 RNA binding domain AY555_RS04015 PF00009 Elongation factor Tu GTP binding domain AY555_RS04015 PF03144 Elongation factor Tu domain 2 AY555_RS04015 PF11987 Translation-initiation factor 2 AY555_RS04015 PF04760 Translation initiation factor IF-2, N-terminal region AY555_RS04015 PF08364 Bacterial translation initiation factor IF-2 associated region AY555_RS04020 PF02033 Ribosome-binding factor A AY555_RS04025 PF09157 Pseudouridine synthase II TruB, C-terminal AY555_RS04025 PF16198 tRNA pseudouridylate synthase B C-terminal domain AY555_RS04025 PF01509 TruB family pseudouridylate synthase (N terminal domain) AY555_RS04030 PF00312 Ribosomal protein S15 AY555_RS04035 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AY555_RS04035 PF00575 S1 RNA binding domain AY555_RS04035 PF01138 3' exoribonuclease family, domain 1 AY555_RS04035 PF03725 3' exoribonuclease family, domain 2 AY555_RS04035 PF00013 KH domain AY555_RS04040 PF03009 Glycerophosphoryl diester phosphodiesterase family AY555_RS04055 PF01554 MatE AY555_RS04060 PF01964 Radical SAM ThiC family AY555_RS04060 PF13667 ThiC-associated domain AY555_RS04070 PF02441 Flavoprotein AY555_RS04070 PF04127 DNA / pantothenate metabolism flavoprotein AY555_RS04075 PF00692 dUTPase AY555_RS04085 PF00291 Pyridoxal-phosphate dependent enzyme AY555_RS04090 PF00899 ThiF family AY555_RS04100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AY555_RS04105 PF02021 Uncharacterised protein family UPF0102 AY555_RS04110 PF04972 BON domain AY555_RS04115 PF13369 Transglutaminase-like superfamily AY555_RS04120 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AY555_RS04120 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AY555_RS04130 PF06233 Usg-like family AY555_RS04135 PF07992 Pyridine nucleotide-disulphide oxidoreductase AY555_RS04140 PF00580 UvrD/REP helicase N-terminal domain AY555_RS04140 PF13361 UvrD-like helicase C-terminal domain AY555_RS04140 PF12705 PD-(D/E)XK nuclease superfamily AY555_RS04150 PF12804 MobA-like NTP transferase domain AY555_RS04155 PF01636 Phosphotransferase enzyme family AY555_RS04160 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AY555_RS04165 PF02390 Putative methyltransferase AY555_RS04170 PF02773 S-adenosylmethionine synthetase, C-terminal domain AY555_RS04170 PF02772 S-adenosylmethionine synthetase, central domain AY555_RS04170 PF00438 S-adenosylmethionine synthetase, N-terminal domain AY555_RS04175 PF01381 Helix-turn-helix AY555_RS04180 PF00795 Carbon-nitrogen hydrolase AY555_RS04185 PF00571 CBS domain AY555_RS04185 PF03471 Transporter associated domain AY555_RS04190 PF02130 Uncharacterized protein family UPF0054 AY555_RS04195 PF02562 PhoH-like protein AY555_RS04200 PF00919 Uncharacterized protein family UPF0004 AY555_RS04200 PF04055 Radical SAM superfamily AY555_RS04200 PF01938 TRAM domain AY555_RS04205 PF00679 Elongation factor G C-terminus AY555_RS04205 PF06421 GTP-binding protein LepA C-terminus AY555_RS04205 PF00009 Elongation factor Tu GTP binding domain AY555_RS04210 PF01427 D-ala-D-ala dipeptidase AY555_RS04215 PF00814 Glycoprotease family AY555_RS04225 PF05190 MutS family domain IV AY555_RS04225 PF00488 MutS domain V AY555_RS04225 PF05192 MutS domain III AY555_RS04225 PF05188 MutS domain II AY555_RS04225 PF01624 MutS domain I AY555_RS04235 PF03949 Malic enzyme, NAD binding domain AY555_RS04235 PF01515 Phosphate acetyl/butaryl transferase AY555_RS04235 PF00390 Malic enzyme, N-terminal domain AY555_RS04240 PF00989 PAS fold AY555_RS04240 PF16736 Single Cache-like AY555_RS04240 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS04240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS04245 PF01895 PhoU domain AY555_RS04250 PF00719 Inorganic pyrophosphatase AY555_RS04255 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS04260 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS04265 PF00497 Bacterial extracellular solute-binding proteins, family 3 AY555_RS04270 PF00005 ABC transporter AY555_RS04275 PF01212 Beta-eliminating lyase AY555_RS04280 PF02272 DHHA1 domain AY555_RS04280 PF01411 tRNA synthetases class II (A) AY555_RS04280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AY555_RS04295 PF00664 ABC transporter transmembrane region AY555_RS04295 PF03412 Peptidase C39 family AY555_RS04295 PF00005 ABC transporter AY555_RS04300 PF00005 ABC transporter AY555_RS04300 PF00664 ABC transporter transmembrane region AY555_RS04305 PF13533 Biotin-lipoyl like AY555_RS04315 PF00005 ABC transporter AY555_RS04320 PF03379 CcmB protein AY555_RS04325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AY555_RS04325 PF03466 LysR substrate binding domain AY555_RS04340 PF00011 Hsp20/alpha crystallin family AY555_RS04345 PF13649 Methyltransferase domain AY555_RS04350 PF02657 Fe-S metabolism associated domain AY555_RS04355 PF01925 Sulfite exporter TauE/SafE AY555_RS04360 PF00012 Hsp70 protein AY555_RS04365 PF00684 DnaJ central domain AY555_RS04365 PF01556 DnaJ C terminal domain AY555_RS04365 PF00226 DnaJ domain AY555_RS04370 PF00672 HAMP domain AY555_RS04370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS04380 PF00912 Transglycosylase AY555_RS04380 PF00905 Penicillin binding protein transpeptidase domain AY555_RS04390 PF00204 DNA gyrase B AY555_RS04390 PF01751 Toprim domain AY555_RS04390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS04390 PF00986 DNA gyrase B subunit, carboxyl terminus AY555_RS04395 PF02463 RecF/RecN/SMC N terminal domain AY555_RS04400 PF00712 DNA polymerase III beta subunit, N-terminal domain AY555_RS04400 PF02767 DNA polymerase III beta subunit, central domain AY555_RS04400 PF02768 DNA polymerase III beta subunit, C-terminal domain AY555_RS04410 PF03109 ABC1 family AY555_RS04415 PF01209 ubiE/COQ5 methyltransferase family AY555_RS04420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AY555_RS04420 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AY555_RS04430 PF00378 Enoyl-CoA hydratase/isomerase AY555_RS04435 PF01649 Ribosomal protein S20 AY555_RS04445 PF08299 Bacterial dnaA protein helix-turn-helix AY555_RS04445 PF11638 DnaA N-terminal domain AY555_RS04445 PF00308 Bacterial dnaA protein AY555_RS04455 PF05593 RHS Repeat AY555_RS04480 PF00501 AMP-binding enzyme AY555_RS04485 PF00873 AcrB/AcrD/AcrF family AY555_RS04490 PF13533 Biotin-lipoyl like AY555_RS04495 PF18284 DNA methylase N-terminal domain AY555_RS04495 PF00145 C-5 cytosine-specific DNA methylase AY555_RS04500 PF03852 DNA mismatch endonuclease Vsr AY555_RS04520 PF08241 Methyltransferase domain AY555_RS04580 PF01475 Ferric uptake regulator family AY555_RS04585 PF00005 ABC transporter AY555_RS04590 PF00950 ABC 3 transport family AY555_RS04605 PF00694 Aconitase C-terminal domain AY555_RS04605 PF00330 Aconitase family (aconitate hydratase) AY555_RS04610 PF07690 Major Facilitator Superfamily AY555_RS04615 PF00009 Elongation factor Tu GTP binding domain AY555_RS04615 PF00679 Elongation factor G C-terminus AY555_RS04615 PF03144 Elongation factor Tu domain 2 AY555_RS04620 PF00294 pfkB family carbohydrate kinase AY555_RS04635 PF13756 Stimulus-sensing domain AY555_RS04635 PF00672 HAMP domain AY555_RS04635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS04635 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS04635 PF13755 Sensor N-terminal transmembrane domain AY555_RS04640 PF00486 Transcriptional regulatory protein, C terminal AY555_RS04640 PF00072 Response regulator receiver domain AY555_RS04645 PF04314 Copper chaperone PCu(A)C AY555_RS04655 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter AY555_RS04660 PF00119 ATP synthase A chain AY555_RS04665 PF00137 ATP synthase subunit C AY555_RS04670 PF00430 ATP synthase B/B' CF(0) AY555_RS04675 PF00430 ATP synthase B/B' CF(0) AY555_RS04710 PF00005 ABC transporter AY555_RS04715 PF01032 FecCD transport family AY555_RS04720 PF01497 Periplasmic binding protein AY555_RS04725 PF05171 Haemin-degrading HemS.ChuX domain AY555_RS04730 PF07715 TonB-dependent Receptor Plug Domain AY555_RS04730 PF00593 TonB dependent receptor AY555_RS04735 PF07715 TonB-dependent Receptor Plug Domain AY555_RS04735 PF00593 TonB dependent receptor AY555_RS04740 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AY555_RS04740 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AY555_RS04750 PF03969 AFG1-like ATPase AY555_RS04760 PF00056 lactate/malate dehydrogenase, NAD binding domain AY555_RS04760 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AY555_RS04765 PF08442 ATP-grasp domain AY555_RS04765 PF00549 CoA-ligase AY555_RS04770 PF02629 CoA binding domain AY555_RS04770 PF00549 CoA-ligase AY555_RS04775 PF16078 2-oxoglutarate dehydrogenase N-terminus AY555_RS04775 PF16870 2-oxoglutarate dehydrogenase C-terminal AY555_RS04775 PF02779 Transketolase, pyrimidine binding domain AY555_RS04775 PF00676 Dehydrogenase E1 component AY555_RS04780 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AY555_RS04780 PF00364 Biotin-requiring enzyme AY555_RS04780 PF02817 e3 binding domain AY555_RS04785 PF07992 Pyridine nucleotide-disulphide oxidoreductase AY555_RS04785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AY555_RS04790 PF00083 Sugar (and other) transporter AY555_RS04795 PF00210 Ferritin-like domain AY555_RS04800 PF02899 Phage integrase, N-terminal SAM-like domain AY555_RS04800 PF00589 Phage integrase family AY555_RS04810 PF00923 Transaldolase/Fructose-6-phosphate aldolase AY555_RS04815 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AY555_RS04815 PF00270 DEAD/DEAH box helicase AY555_RS04815 PF18074 Primosomal protein N C-terminal domain AY555_RS04815 PF17764 3′ DNA-binding domain (3′BD) AY555_RS04820 PF00213 ATP synthase delta (OSCP) subunit AY555_RS04825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AY555_RS04825 PF00306 ATP synthase alpha/beta chain, C terminal domain AY555_RS04825 PF02874 ATP synthase alpha/beta family, beta-barrel domain AY555_RS04830 PF00231 ATP synthase AY555_RS04835 PF02874 ATP synthase alpha/beta family, beta-barrel domain AY555_RS04835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AY555_RS04840 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AY555_RS04850 PF03807 NADP oxidoreductase coenzyme F420-dependent AY555_RS04850 PF14748 Pyrroline-5-carboxylate reductase dimerisation AY555_RS04865 PF01370 NAD dependent epimerase/dehydratase family AY555_RS04870 PF01790 Prolipoprotein diacylglyceryl transferase AY555_RS04880 PF02578 Multi-copper polyphenol oxidoreductase laccase AY555_RS04890 PF14572 Phosphoribosyl synthetase-associated domain AY555_RS04890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AY555_RS04895 PF00209 Sodium:neurotransmitter symporter family AY555_RS04900 PF01386 Ribosomal L25p family AY555_RS04900 PF14693 Ribosomal protein TL5, C-terminal domain AY555_RS04905 PF01195 Peptidyl-tRNA hydrolase AY555_RS04910 PF01926 50S ribosome-binding GTPase AY555_RS04910 PF06071 Protein of unknown function (DUF933) AY555_RS04920 PF04055 Radical SAM superfamily AY555_RS04930 PF00293 NUDIX domain AY555_RS04940 PF01043 SecA preprotein cross-linking domain AY555_RS04940 PF07517 SecA DEAD-like domain AY555_RS04940 PF07516 SecA Wing and Scaffold domain AY555_RS04940 PF02810 SEC-C motif AY555_RS04970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AY555_RS04970 PF06988 NifT/FixU protein AY555_RS04975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS04975 PF00497 Bacterial extracellular solute-binding proteins, family 3 AY555_RS04975 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS04990 PF02348 Cytidylyltransferase AY555_RS04995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AY555_RS05000 PF02719 Polysaccharide biosynthesis protein AY555_RS05005 PF00669 Bacterial flagellin N-terminal helical region AY555_RS05005 PF00700 Bacterial flagellin C-terminal helical region AY555_RS05010 PF00893 Small Multidrug Resistance protein AY555_RS05020 PF00929 Exonuclease AY555_RS05020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AY555_RS05020 PF07733 Bacterial DNA polymerase III alpha NTPase domain AY555_RS05020 PF11490 DNA polymerase III polC-type N-terminus II AY555_RS05020 PF14579 Helix-hairpin-helix motif AY555_RS05020 PF14480 DNA polymerase III polC-type N-terminus I AY555_RS05020 PF02811 PHP domain AY555_RS05025 PF00571 CBS domain AY555_RS05030 PF00474 Sodium:solute symporter family AY555_RS05035 PF04341 Protein of unknown function, DUF485 AY555_RS05040 PF00892 EamA-like transporter family AY555_RS05045 PF00226 DnaJ domain AY555_RS05045 PF05099 Tellurite resistance protein TerB AY555_RS05055 PF14489 QueF-like protein AY555_RS05060 PF01702 Queuine tRNA-ribosyltransferase AY555_RS05065 PF02547 Queuosine biosynthesis protein AY555_RS05080 PF00551 Formyl transferase AY555_RS05090 PF02600 Disulfide bond formation protein DsbB AY555_RS05095 PF03232 Ubiquinone biosynthesis protein COQ7 AY555_RS05105 PF02844 Phosphoribosylglycinamide synthetase, N domain AY555_RS05105 PF02843 Phosphoribosylglycinamide synthetase, C domain AY555_RS05105 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AY555_RS05110 PF02601 Exonuclease VII, large subunit AY555_RS05110 PF13742 OB-fold nucleic acid binding domain AY555_RS05135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AY555_RS05135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AY555_RS05135 PF02824 TGS domain AY555_RS05135 PF03129 Anticodon binding domain AY555_RS05140 PF00707 Translation initiation factor IF-3, C-terminal domain AY555_RS05140 PF05198 Translation initiation factor IF-3, N-terminal domain AY555_RS05155 PF00413 Matrixin AY555_RS05155 PF08548 Peptidase M10 serralysin C terminal AY555_RS05155 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AY555_RS05185 PF01546 Peptidase family M20/M25/M40 AY555_RS05185 PF07687 Peptidase dimerisation domain AY555_RS05190 PF14602 Hexapeptide repeat of succinyl-transferase AY555_RS05190 PF00132 Bacterial transferase hexapeptide (six repeats) AY555_RS05190 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AY555_RS05195 PF01590 GAF domain AY555_RS05195 PF00990 Diguanylate cyclase, GGDEF domain AY555_RS05195 PF00360 Phytochrome region AY555_RS05195 PF00563 EAL domain AY555_RS05210 PF01926 50S ribosome-binding GTPase AY555_RS05215 PF14849 YidC periplasmic domain AY555_RS05215 PF02096 60Kd inner membrane protein AY555_RS05220 PF00825 Ribonuclease P AY555_RS05225 PF00468 Ribosomal protein L34 AY555_RS05230 PF00115 Cytochrome C and Quinol oxidase polypeptide I AY555_RS05245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AY555_RS05245 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AY555_RS05250 PF12801 4Fe-4S binding domain AY555_RS05250 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AY555_RS05250 PF13746 4Fe-4S dicluster domain AY555_RS05265 PF03597 Cytochrome oxidase maturation protein cbb3-type AY555_RS05270 PF00027 Cyclic nucleotide-binding domain AY555_RS05270 PF13545 Crp-like helix-turn-helix domain AY555_RS05275 PF02548 Ketopantoate hydroxymethyltransferase AY555_RS05280 PF02569 Pantoate-beta-alanine ligase AY555_RS05285 PF08269 Cache domain AY555_RS05285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS05290 PF04107 Glutamate-cysteine ligase family 2(GCS2) AY555_RS05295 PF04452 RNA methyltransferase AY555_RS05300 PF01040 UbiA prenyltransferase family AY555_RS05305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS05305 PF02743 Cache domain AY555_RS05305 PF00672 HAMP domain AY555_RS05310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS05310 PF00672 HAMP domain AY555_RS05310 PF02743 Cache domain AY555_RS05315 PF02153 Prephenate dehydrogenase AY555_RS05330 PF00753 Metallo-beta-lactamase superfamily AY555_RS05330 PF16123 Hydroxyacylglutathione hydrolase C-terminus AY555_RS05335 PF03458 UPF0126 domain AY555_RS05340 PF06574 FAD synthetase AY555_RS05340 PF01687 Riboflavin kinase AY555_RS05345 PF08264 Anticodon-binding domain of tRNA AY555_RS05345 PF00133 tRNA synthetases class I (I, L, M and V) AY555_RS05345 PF06827 Zinc finger found in FPG and IleRS AY555_RS05350 PF01252 Signal peptidase (SPase) II AY555_RS05360 PF05193 Peptidase M16 inactive domain AY555_RS05360 PF00675 Insulinase (Peptidase family M16) AY555_RS05365 PF05193 Peptidase M16 inactive domain AY555_RS05370 PF00342 Phosphoglucose isomerase AY555_RS05375 PF08676 MutL C terminal dimerisation domain AY555_RS05375 PF01119 DNA mismatch repair protein, C-terminal domain AY555_RS05385 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AY555_RS05390 PF12792 CSS motif domain associated with EAL AY555_RS05390 PF00563 EAL domain AY555_RS05410 PF17863 AAA lid domain AY555_RS05410 PF07726 ATPase family associated with various cellular activities (AAA) AY555_RS05420 PF00293 NUDIX domain AY555_RS05430 PF12627 Probable RNA and SrmB- binding site of polymerase A AY555_RS05430 PF01743 Poly A polymerase head domain AY555_RS05430 PF13735 tRNA nucleotidyltransferase domain 2 putative AY555_RS05435 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AY555_RS05435 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AY555_RS05440 PF02594 Uncharacterised ACR, YggU family COG1872 AY555_RS05445 PF02325 YGGT family AY555_RS05495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AY555_RS05495 PF03466 LysR substrate binding domain AY555_RS05500 PF01810 LysE type translocator AY555_RS05510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AY555_RS05515 PF04055 Radical SAM superfamily AY555_RS05515 PF06463 Molybdenum Cofactor Synthesis C AY555_RS05525 PF08889 WbqC-like protein family AY555_RS05535 PF00118 TCP-1/cpn60 chaperonin family AY555_RS05540 PF00166 Chaperonin 10 Kd subunit AY555_RS05550 PF00535 Glycosyl transferase family 2 AY555_RS05555 PF01921 tRNA synthetases class I (K) AY555_RS05560 PF00672 HAMP domain AY555_RS05560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS05560 PF16591 Helical bimodular sensor domain AY555_RS05570 PF01381 Helix-turn-helix AY555_RS05575 PF13307 Helicase C-terminal domain AY555_RS05575 PF04851 Type III restriction enzyme, res subunit AY555_RS05575 PF00929 Exonuclease AY555_RS05580 PF01063 Amino-transferase class IV AY555_RS05620 PF08447 PAS fold AY555_RS05620 PF13426 PAS domain AY555_RS05620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS05680 PF01207 Dihydrouridine synthase (Dus) AY555_RS05685 PF05853 beta-keto acid cleavage enzyme AY555_RS05690 PF00186 Dihydrofolate reductase AY555_RS05695 PF00303 Thymidylate synthase AY555_RS05710 PF05683 Fumarase C-terminus AY555_RS05710 PF05681 Fumarate hydratase (Fumerase) AY555_RS05730 PF00005 ABC transporter AY555_RS05730 PF12848 ABC transporter AY555_RS05735 PF00334 Nucleoside diphosphate kinase AY555_RS05740 PF00155 Aminotransferase class I and II AY555_RS05755 PF02810 SEC-C motif AY555_RS05765 PF03741 Integral membrane protein TerC family AY555_RS05800 PF00497 Bacterial extracellular solute-binding proteins, family 3 AY555_RS05810 PF00106 short chain dehydrogenase AY555_RS05815 PF00156 Phosphoribosyl transferase domain AY555_RS05815 PF13537 Glutamine amidotransferase domain AY555_RS05825 PF06745 KaiC AY555_RS05825 PF18073 Rubredoxin metal binding domain AY555_RS05830 PF00005 ABC transporter AY555_RS05835 PF02405 Permease MlaE AY555_RS05840 PF01168 Alanine racemase, N-terminal domain AY555_RS05840 PF00842 Alanine racemase, C-terminal domain AY555_RS05845 PF00772 DnaB-like helicase N terminal domain AY555_RS05845 PF03796 DnaB-like helicase C terminal domain AY555_RS05850 PF01281 Ribosomal protein L9, N-terminal domain AY555_RS05850 PF03948 Ribosomal protein L9, C-terminal domain AY555_RS05855 PF01084 Ribosomal protein S18 AY555_RS05860 PF01250 Ribosomal protein S6 AY555_RS05865 PF00698 Acyl transferase domain AY555_RS05875 PF00550 Phosphopantetheine attachment site AY555_RS05880 PF00109 Beta-ketoacyl synthase, N-terminal domain AY555_RS05880 PF02801 Beta-ketoacyl synthase, C-terminal domain AY555_RS05885 PF02618 YceG-like family AY555_RS05890 PF01264 Chorismate synthase AY555_RS05900 PF16916 Dimerisation domain of Zinc Transporter AY555_RS05900 PF01545 Cation efflux family AY555_RS05905 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AY555_RS05905 PF01243 Pyridoxamine 5'-phosphate oxidase AY555_RS05910 PF00226 DnaJ domain AY555_RS05910 PF00684 DnaJ central domain AY555_RS05910 PF01556 DnaJ C terminal domain AY555_RS05930 PF01590 GAF domain AY555_RS05930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS05930 PF08446 PAS fold AY555_RS05930 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS05930 PF00360 Phytochrome region AY555_RS05935 PF00158 Sigma-54 interaction domain AY555_RS05935 PF00072 Response regulator receiver domain AY555_RS05935 PF02954 Bacterial regulatory protein, Fis family AY555_RS05965 PF04085 rod shape-determining protein MreC AY555_RS05975 PF00905 Penicillin binding protein transpeptidase domain AY555_RS05975 PF03717 Penicillin-binding Protein dimerisation domain AY555_RS05980 PF01098 Cell cycle protein AY555_RS06035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AY555_RS06065 PF03120 NAD-dependent DNA ligase OB-fold domain AY555_RS06065 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AY555_RS06065 PF12826 Helix-hairpin-helix motif AY555_RS06065 PF00533 BRCA1 C Terminus (BRCT) domain AY555_RS06065 PF01653 NAD-dependent DNA ligase adenylation domain AY555_RS06070 PF02463 RecF/RecN/SMC N terminal domain AY555_RS06075 PF13525 Outer membrane lipoprotein AY555_RS06085 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AY555_RS06090 PF00091 Tubulin/FtsZ family, GTPase domain AY555_RS06090 PF12327 FtsZ family, C-terminal domain AY555_RS06095 PF02491 SHS2 domain inserted in FTSA AY555_RS06100 PF08478 POTRA domain, FtsQ-type AY555_RS06100 PF03799 Cell division protein FtsQ AY555_RS06105 PF01820 D-ala D-ala ligase N-terminus AY555_RS06105 PF07478 D-ala D-ala ligase C-terminus AY555_RS06110 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AY555_RS06110 PF01565 FAD binding domain AY555_RS06115 PF02875 Mur ligase family, glutamate ligase domain AY555_RS06115 PF01225 Mur ligase family, catalytic domain AY555_RS06115 PF08245 Mur ligase middle domain AY555_RS06120 PF04101 Glycosyltransferase family 28 C-terminal domain AY555_RS06120 PF03033 Glycosyltransferase family 28 N-terminal domain AY555_RS06125 PF01098 Cell cycle protein AY555_RS06130 PF08245 Mur ligase middle domain AY555_RS06135 PF00953 Glycosyl transferase family 4 AY555_RS06135 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AY555_RS06140 PF01225 Mur ligase family, catalytic domain AY555_RS06140 PF02875 Mur ligase family, glutamate ligase domain AY555_RS06140 PF08245 Mur ligase middle domain AY555_RS06145 PF02875 Mur ligase family, glutamate ligase domain AY555_RS06145 PF01225 Mur ligase family, catalytic domain AY555_RS06145 PF08245 Mur ligase middle domain AY555_RS06150 PF03717 Penicillin-binding Protein dimerisation domain AY555_RS06150 PF00905 Penicillin binding protein transpeptidase domain AY555_RS06160 PF01795 MraW methylase family AY555_RS06165 PF02381 MraZ protein, putative antitoxin-like AY555_RS06185 PF01435 Peptidase family M48 AY555_RS06195 PF03702 Anhydro-N-acetylmuramic acid kinase AY555_RS06200 PF00579 tRNA synthetases class I (W and Y) AY555_RS06205 PF09383 NIL domain AY555_RS06205 PF00005 ABC transporter AY555_RS06210 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS06215 PF03180 NLPA lipoprotein AY555_RS06225 PF12146 Serine aminopeptidase, S33 AY555_RS06230 PF00472 RF-1 domain AY555_RS06230 PF03462 PCRF domain AY555_RS06235 PF17092 Penicillin-binding protein OB-like domain AY555_RS06235 PF00912 Transglycosylase AY555_RS06235 PF00905 Penicillin binding protein transpeptidase domain AY555_RS06240 PF11741 AMIN domain AY555_RS06240 PF01520 N-acetylmuramoyl-L-alanine amidase AY555_RS06245 PF00575 S1 RNA binding domain AY555_RS06245 PF10150 Ribonuclease E/G family AY555_RS06245 PF12111 Polyribonucleotide phosphorylase C terminal AY555_RS06255 PF00111 2Fe-2S iron-sulfur cluster binding domain AY555_RS06260 PF00266 Aminotransferase class-V AY555_RS06265 PF02082 Transcriptional regulator AY555_RS06270 PF00132 Bacterial transferase hexapeptide (six repeats) AY555_RS06270 PF06426 Serine acetyltransferase, N-terminal AY555_RS06280 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AY555_RS06295 PF01728 FtsJ-like methyltransferase AY555_RS06300 PF00478 IMP dehydrogenase / GMP reductase domain AY555_RS06300 PF00571 CBS domain AY555_RS06305 PF01029 NusB family AY555_RS06305 PF01189 16S rRNA methyltransferase RsmB/F AY555_RS06310 PF00672 HAMP domain AY555_RS06310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS06315 PF02540 NAD synthase AY555_RS06315 PF00958 GMP synthase C terminal domain AY555_RS06315 PF00117 Glutamine amidotransferase class-I AY555_RS06320 PF08666 SAF domain AY555_RS06320 PF03102 NeuB family AY555_RS06325 PF00551 Formyl transferase AY555_RS06325 PF00668 Condensation domain AY555_RS06325 PF13193 AMP-binding enzyme C-terminal domain AY555_RS06325 PF00550 Phosphopantetheine attachment site AY555_RS06325 PF00501 AMP-binding enzyme AY555_RS06360 PF07731 Multicopper oxidase AY555_RS06360 PF00394 Multicopper oxidase AY555_RS06360 PF07732 Multicopper oxidase AY555_RS06375 PF00375 Sodium:dicarboxylate symporter family AY555_RS06385 PF00589 Phage integrase family AY555_RS06385 PF14659 Phage integrase, N-terminal SAM-like domain AY555_RS06500 PF04984 Phage tail sheath protein subtilisin-like domain AY555_RS06500 PF17482 Phage tail sheath C-terminal domain AY555_RS06510 PF07484 Phage Tail Collar Domain AY555_RS06615 PF00692 dUTPase AY555_RS06620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AY555_RS06630 PF06793 Uncharacterised protein family (UPF0262) AY555_RS06635 PF01451 Low molecular weight phosphotyrosine protein phosphatase AY555_RS06640 PF11849 Domain of unknown function (DUF3369) AY555_RS06645 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS06645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS06645 PF00497 Bacterial extracellular solute-binding proteins, family 3 AY555_RS06655 PF01176 Translation initiation factor 1A / IF-1 AY555_RS06660 PF02545 Maf-like protein AY555_RS06665 PF10150 Ribonuclease E/G family AY555_RS06670 PF03884 DNA gyrase inhibitor YacG AY555_RS06680 PF00005 ABC transporter AY555_RS06685 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS06690 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS06695 PF00497 Bacterial extracellular solute-binding proteins, family 3 AY555_RS06700 PF00570 HRDC domain AY555_RS06700 PF01612 3'-5' exonuclease AY555_RS06705 PF02541 Ppx/GppA phosphatase family AY555_RS06710 PF02503 Polyphosphate kinase middle domain AY555_RS06710 PF13089 Polyphosphate kinase N-terminal domain AY555_RS06710 PF17941 Polyphosphate kinase C-terminal domain 1 AY555_RS06710 PF13090 Polyphosphate kinase C-terminal domain 2 AY555_RS06720 PF01594 AI-2E family transporter AY555_RS06730 PF00586 AIR synthase related protein, N-terminal domain AY555_RS06730 PF02769 AIR synthase related protein, C-terminal domain AY555_RS06735 PF00551 Formyl transferase AY555_RS06740 PF04305 Protein of unknown function (DUF455) AY555_RS06745 PF00892 EamA-like transporter family AY555_RS06755 PF03710 Glutamate-ammonia ligase adenylyltransferase AY555_RS06755 PF08335 GlnD PII-uridylyltransferase AY555_RS06760 PF00578 AhpC/TSA family AY555_RS06765 PF00152 tRNA synthetases class II (D, K and N) AY555_RS06765 PF01336 OB-fold nucleic acid binding domain AY555_RS06765 PF02938 GAD domain AY555_RS06775 PF00480 ROK family AY555_RS06780 PF01343 Peptidase family S49 AY555_RS06785 PF01728 FtsJ-like methyltransferase AY555_RS06785 PF01479 S4 domain AY555_RS06790 PF01914 MarC family integral membrane protein AY555_RS06795 PF02780 Transketolase, C-terminal domain AY555_RS06795 PF02779 Transketolase, pyrimidine binding domain AY555_RS06795 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AY555_RS06800 PF00348 Polyprenyl synthetase AY555_RS06805 PF02609 Exonuclease VII small subunit AY555_RS06815 PF02386 Cation transport protein AY555_RS06825 PF13840 ACT domain AY555_RS06825 PF01842 ACT domain AY555_RS06825 PF00696 Amino acid kinase family AY555_RS06830 PF03060 Nitronate monooxygenase AY555_RS06835 PF01590 GAF domain AY555_RS06835 PF05524 PEP-utilising enzyme, N-terminal AY555_RS06835 PF02896 PEP-utilising enzyme, TIM barrel domain AY555_RS06835 PF00391 PEP-utilising enzyme, mobile domain AY555_RS06845 PF04551 GcpE protein AY555_RS06850 PF03129 Anticodon binding domain AY555_RS06850 PF13393 Histidyl-tRNA synthetase AY555_RS06855 PF01488 Shikimate / quinate 5-dehydrogenase AY555_RS06855 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AY555_RS06855 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AY555_RS06860 PF03462 PCRF domain AY555_RS06860 PF00472 RF-1 domain AY555_RS06865 PF13847 Methyltransferase domain AY555_RS06865 PF17827 PrmC N-terminal domain AY555_RS06880 PF01551 Peptidase family M23 AY555_RS06880 PF01476 LysM domain AY555_RS06880 PF08525 Opacity-associated protein A N-terminal motif AY555_RS06935 PF10431 C-terminal, D2-small domain, of ClpB protein AY555_RS06935 PF00004 ATPase family associated with various cellular activities (AAA) AY555_RS06935 PF17871 AAA lid domain AY555_RS06935 PF07724 AAA domain (Cdc48 subfamily) AY555_RS06935 PF02861 Clp amino terminal domain, pathogenicity island component AY555_RS06945 PF03641 Possible lysine decarboxylase AY555_RS06945 PF11892 Domain of unknown function (DUF3412) AY555_RS06945 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AY555_RS06950 PF02646 RmuC family AY555_RS06955 PF00156 Phosphoribosyl transferase domain AY555_RS06960 PF06258 Mitochondrial fission ELM1 AY555_RS06965 PF00106 short chain dehydrogenase AY555_RS06975 PF04055 Radical SAM superfamily AY555_RS06980 PF01261 Xylose isomerase-like TIM barrel AY555_RS06985 PF00986 DNA gyrase B subunit, carboxyl terminus AY555_RS06985 PF01751 Toprim domain AY555_RS06985 PF00204 DNA gyrase B AY555_RS06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS06990 PF03061 Thioesterase superfamily AY555_RS06995 PF00034 Cytochrome c AY555_RS07005 PF12804 MobA-like NTP transferase domain AY555_RS07005 PF14602 Hexapeptide repeat of succinyl-transferase AY555_RS07005 PF00132 Bacterial transferase hexapeptide (six repeats) AY555_RS07010 PF01380 SIS domain AY555_RS07020 PF09940 Domain of unknown function (DUF2172) AY555_RS07020 PF16254 Domain of unknown function (DUF4910) AY555_RS07020 PF16221 winged helix-turn-helix AY555_RS07030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AY555_RS07030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AY555_RS07035 PF01474 Class-II DAHP synthetase family AY555_RS07045 PF00795 Carbon-nitrogen hydrolase AY555_RS07045 PF02540 NAD synthase AY555_RS07050 PF00749 tRNA synthetases class I (E and Q), catalytic domain AY555_RS07055 PF01925 Sulfite exporter TauE/SafE AY555_RS07060 PF00501 AMP-binding enzyme AY555_RS07060 PF13193 AMP-binding enzyme C-terminal domain AY555_RS07065 PF01266 FAD dependent oxidoreductase AY555_RS07070 PF03441 FAD binding domain of DNA photolyase AY555_RS07070 PF00875 DNA photolyase AY555_RS07100 PF01048 Phosphorylase superfamily AY555_RS07105 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AY555_RS07110 PF01676 Metalloenzyme superfamily AY555_RS07115 PF01791 DeoC/LacD family aldolase AY555_RS07120 PF01773 Na+ dependent nucleoside transporter N-terminus AY555_RS07120 PF07662 Na+ dependent nucleoside transporter C-terminus AY555_RS07130 PF00849 RNA pseudouridylate synthase AY555_RS07135 PF12544 Lysine-2,3-aminomutase AY555_RS07135 PF04055 Radical SAM superfamily AY555_RS07150 PF02770 Acyl-CoA dehydrogenase, middle domain AY555_RS07150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AY555_RS07150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AY555_RS07150 PF12806 Acetyl-CoA dehydrogenase C-terminal like AY555_RS07155 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AY555_RS07155 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AY555_RS07155 PF00378 Enoyl-CoA hydratase/isomerase AY555_RS07160 PF02803 Thiolase, C-terminal domain AY555_RS07160 PF00108 Thiolase, N-terminal domain AY555_RS07165 PF00501 AMP-binding enzyme AY555_RS07165 PF13193 AMP-binding enzyme C-terminal domain AY555_RS07170 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AY555_RS07185 PF09397 Ftsk gamma domain AY555_RS07185 PF01580 FtsK/SpoIIIE family AY555_RS07185 PF17854 FtsK alpha domain AY555_RS07185 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AY555_RS07190 PF12697 Alpha/beta hydrolase family AY555_RS07195 PF03883 Peroxide stress protein YaaA AY555_RS07200 PF00871 Acetokinase family AY555_RS07205 PF01515 Phosphate acetyl/butaryl transferase AY555_RS07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS07210 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS07210 PF00072 Response regulator receiver domain AY555_RS07210 PF09308 LuxQ, periplasmic AY555_RS07215 PF05114 Protein of unknown function (DUF692) AY555_RS07225 PF00672 HAMP domain AY555_RS07225 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS07225 PF18698 Histidine kinase sensor domain AY555_RS07225 PF00989 PAS fold AY555_RS07225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS07230 PF00486 Transcriptional regulatory protein, C terminal AY555_RS07230 PF00072 Response regulator receiver domain AY555_RS07235 PF00990 Diguanylate cyclase, GGDEF domain AY555_RS07235 PF00072 Response regulator receiver domain AY555_RS07240 PF00072 Response regulator receiver domain AY555_RS07240 PF01627 Hpt domain AY555_RS07240 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS07245 PF01584 CheW-like domain AY555_RS07265 PF00455 DeoR C terminal sensor domain AY555_RS07265 PF08220 DeoR-like helix-turn-helix domain AY555_RS07270 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AY555_RS07270 PF01266 FAD dependent oxidoreductase AY555_RS07280 PF00120 Glutamine synthetase, catalytic domain AY555_RS07285 PF13380 CoA binding domain AY555_RS07290 PF00999 Sodium/hydrogen exchanger family AY555_RS07290 PF03471 Transporter associated domain AY555_RS07290 PF02080 TrkA-C domain AY555_RS07295 PF00572 Ribosomal protein L13 AY555_RS07300 PF00380 Ribosomal protein S9/S16 AY555_RS07305 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AY555_RS07305 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AY555_RS07310 PF16653 Saccharopine dehydrogenase C-terminal domain AY555_RS07310 PF03435 Saccharopine dehydrogenase NADP binding domain AY555_RS07315 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AY555_RS07315 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AY555_RS07320 PF00115 Cytochrome C and Quinol oxidase polypeptide I AY555_RS07325 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AY555_RS07330 PF00510 Cytochrome c oxidase subunit III AY555_RS07335 PF01266 FAD dependent oxidoreductase AY555_RS07335 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AY555_RS07350 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AY555_RS07355 PF17284 Spermidine synthase tetramerisation domain AY555_RS07360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AY555_RS07360 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AY555_RS07370 PF01642 Methylmalonyl-CoA mutase AY555_RS07370 PF02310 B12 binding domain AY555_RS07375 PF01642 Methylmalonyl-CoA mutase AY555_RS07380 PF02608 ABC transporter substrate-binding protein PnrA-like AY555_RS07385 PF00440 Bacterial regulatory proteins, tetR family AY555_RS07390 PF13649 Methyltransferase domain AY555_RS07400 PF00211 Adenylate and Guanylate cyclase catalytic domain AY555_RS07400 PF00072 Response regulator receiver domain AY555_RS07405 PF01197 Ribosomal protein L31 AY555_RS07425 PF00459 Inositol monophosphatase family AY555_RS07430 PF01132 Elongation factor P (EF-P) OB domain AY555_RS07430 PF08207 Elongation factor P (EF-P) KOW-like domain AY555_RS07430 PF09285 Elongation factor P, C-terminal AY555_RS07435 PF00152 tRNA synthetases class II (D, K and N) AY555_RS07440 PF02581 Thiamine monophosphate synthase AY555_RS07465 PF13277 YmdB-like protein AY555_RS07470 PF01709 Transcriptional regulator AY555_RS07475 PF02075 Crossover junction endodeoxyribonuclease RuvC AY555_RS07480 PF07499 RuvA, C-terminal domain AY555_RS07480 PF01330 RuvA N terminal domain AY555_RS07485 PF17864 RuvB AAA lid domain AY555_RS07485 PF05491 RuvB C-terminal winged helix domain AY555_RS07485 PF05496 Holliday junction DNA helicase RuvB P-loop domain AY555_RS07490 PF03061 Thioesterase superfamily AY555_RS07495 PF01618 MotA/TolQ/ExbB proton channel family AY555_RS07500 PF02472 Biopolymer transport protein ExbD/TolR AY555_RS07510 PF04052 TolB amino-terminal domain AY555_RS07510 PF07676 WD40-like Beta Propeller Repeat AY555_RS07515 PF00691 OmpA family AY555_RS07525 PF01171 PP-loop family AY555_RS07530 PF01434 Peptidase family M41 AY555_RS07530 PF06480 FtsH Extracellular AY555_RS07530 PF17862 AAA+ lid domain AY555_RS07530 PF00004 ATPase family associated with various cellular activities (AAA) AY555_RS07535 PF00809 Pterin binding enzyme AY555_RS07540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AY555_RS07540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AY555_RS07540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AY555_RS07540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AY555_RS07545 PF02581 Thiamine monophosphate synthase AY555_RS07545 PF08543 Phosphomethylpyrimidine kinase AY555_RS07560 PF01842 ACT domain AY555_RS07560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AY555_RS07560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AY555_RS07580 PF02082 Transcriptional regulator AY555_RS07585 PF01458 Uncharacterized protein family (UPF0051) AY555_RS07590 PF00005 ABC transporter AY555_RS07595 PF01458 Uncharacterized protein family (UPF0051) AY555_RS07600 PF00266 Aminotransferase class-V AY555_RS07605 PF01883 Iron-sulfur cluster assembly protein AY555_RS07610 PF01521 Iron-sulphur cluster biosynthesis AY555_RS07615 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AY555_RS07615 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AY555_RS07620 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AY555_RS07625 PF02233 NAD(P) transhydrogenase beta subunit AY555_RS07640 PF02673 Bacitracin resistance protein BacA AY555_RS07645 PF00005 ABC transporter AY555_RS07645 PF16326 ABC transporter C-terminal domain AY555_RS07650 PF08402 TOBE domain AY555_RS07650 PF00005 ABC transporter AY555_RS07655 PF02653 Branched-chain amino acid transport system / permease component AY555_RS07675 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AY555_RS07675 PF02222 ATP-grasp domain AY555_RS07680 PF00731 AIR carboxylase AY555_RS07695 PF00365 Phosphofructokinase AY555_RS07700 PF02441 Flavoprotein AY555_RS07705 PF09312 SurA N-terminal domain AY555_RS07705 PF00639 PPIC-type PPIASE domain AY555_RS07725 PF12832 MFS_1 like family AY555_RS07730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AY555_RS07730 PF03129 Anticodon binding domain AY555_RS07735 PF12704 MacB-like periplasmic core domain AY555_RS07735 PF02687 FtsX-like permease family AY555_RS07740 PF00005 ABC transporter AY555_RS07750 PF03605 Anaerobic c4-dicarboxylate membrane transporter AY555_RS07755 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AY555_RS07755 PF02811 PHP domain AY555_RS07755 PF14579 Helix-hairpin-helix motif AY555_RS07755 PF07733 Bacterial DNA polymerase III alpha NTPase domain AY555_RS07760 PF00318 Ribosomal protein S2 AY555_RS07765 PF00889 Elongation factor TS AY555_RS07770 PF00696 Amino acid kinase family AY555_RS07775 PF01765 Ribosome recycling factor AY555_RS07780 PF01255 Putative undecaprenyl diphosphate synthase AY555_RS07790 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AY555_RS07790 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AY555_RS07790 PF13288 DXP reductoisomerase C-terminal domain AY555_RS07795 PF17820 PDZ domain AY555_RS07795 PF02163 Peptidase family M50 AY555_RS07800 PF07244 Surface antigen variable number repeat AY555_RS07800 PF01103 Surface antigen AY555_RS07810 PF00132 Bacterial transferase hexapeptide (six repeats) AY555_RS07810 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AY555_RS07815 PF07977 FabA-like domain AY555_RS07820 PF00132 Bacterial transferase hexapeptide (six repeats) AY555_RS07820 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AY555_RS07825 PF17930 LpxI N-terminal domain AY555_RS07825 PF06230 LpxI C-terminal domain AY555_RS07830 PF02684 Lipid-A-disaccharide synthetase AY555_RS07835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AY555_RS07840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AY555_RS07845 PF00873 AcrB/AcrD/AcrF family AY555_RS07850 PF00034 Cytochrome c AY555_RS07855 PF01165 Ribosomal protein S21 AY555_RS07860 PF01327 Polypeptide deformylase AY555_RS07875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AY555_RS07875 PF03466 LysR substrate binding domain AY555_RS07880 PF01207 Dihydrouridine synthase (Dus) AY555_RS07930 PF00293 NUDIX domain AY555_RS07935 PF13614 AAA domain AY555_RS07940 PF00849 RNA pseudouridylate synthase AY555_RS07950 PF00271 Helicase conserved C-terminal domain AY555_RS07950 PF00270 DEAD/DEAH box helicase AY555_RS07985 PF00691 OmpA family AY555_RS07990 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AY555_RS07995 PF01648 4'-phosphopantetheinyl transferase superfamily AY555_RS08000 PF10502 Signal peptidase, peptidase S26 AY555_RS08005 PF00035 Double-stranded RNA binding motif AY555_RS08005 PF14622 Ribonuclease-III-like AY555_RS08010 PF07650 KH domain AY555_RS08010 PF01926 50S ribosome-binding GTPase AY555_RS08015 PF11967 Recombination protein O N terminal AY555_RS08015 PF02565 Recombination protein O C terminal AY555_RS08020 PF00521 DNA gyrase/topoisomerase IV, subunit A AY555_RS08020 PF03989 DNA gyrase C-terminal domain, beta-propeller AY555_RS08025 PF04376 Arginine-tRNA-protein transferase, N terminus AY555_RS08025 PF04377 Arginine-tRNA-protein transferase, C terminus AY555_RS08030 PF13677 Membrane MotB of proton-channel complex MotA/MotB AY555_RS08030 PF00691 OmpA family AY555_RS08035 PF01618 MotA/TolQ/ExbB proton channel family AY555_RS08040 PF01613 Flavin reductase like domain AY555_RS08045 PF01266 FAD dependent oxidoreductase AY555_RS08050 PF01256 Carbohydrate kinase AY555_RS08050 PF03853 YjeF-related protein N-terminus AY555_RS08065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AY555_RS08065 PF05697 Bacterial trigger factor protein (TF) AY555_RS08065 PF05698 Bacterial trigger factor protein (TF) C-terminus AY555_RS08070 PF00574 Clp protease AY555_RS08075 PF10431 C-terminal, D2-small domain, of ClpB protein AY555_RS08075 PF06689 ClpX C4-type zinc finger AY555_RS08075 PF07724 AAA domain (Cdc48 subfamily) AY555_RS08080 PF00676 Dehydrogenase E1 component AY555_RS08085 PF00364 Biotin-requiring enzyme AY555_RS08085 PF02779 Transketolase, pyrimidine binding domain AY555_RS08085 PF02780 Transketolase, C-terminal domain AY555_RS08090 PF02817 e3 binding domain AY555_RS08090 PF00364 Biotin-requiring enzyme AY555_RS08090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AY555_RS08095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AY555_RS08095 PF07992 Pyridine nucleotide-disulphide oxidoreductase AY555_RS08100 PF04055 Radical SAM superfamily AY555_RS08100 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AY555_RS08105 PF03364 Polyketide cyclase / dehydrase and lipid transport AY555_RS08110 PF00994 Probable molybdopterin binding domain AY555_RS08110 PF02464 Competence-damaged protein AY555_RS08115 PF04608 Phosphatidylglycerophosphatase A AY555_RS08120 PF01476 LysM domain AY555_RS08120 PF08525 Opacity-associated protein A N-terminal motif AY555_RS08120 PF01551 Peptidase family M23 AY555_RS08130 PF00490 Delta-aminolevulinic acid dehydratase AY555_RS08135 PF00378 Enoyl-CoA hydratase/isomerase AY555_RS08150 PF02502 Ribose/Galactose Isomerase AY555_RS08155 PF00464 Serine hydroxymethyltransferase AY555_RS08160 PF03477 ATP cone domain AY555_RS08165 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AY555_RS08165 PF01872 RibD C-terminal domain AY555_RS08170 PF00677 Lumazine binding domain AY555_RS08175 PF00925 GTP cyclohydrolase II AY555_RS08175 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AY555_RS08180 PF00885 6,7-dimethyl-8-ribityllumazine synthase AY555_RS08185 PF01029 NusB family AY555_RS08190 PF00586 AIR synthase related protein, N-terminal domain AY555_RS08190 PF02769 AIR synthase related protein, C-terminal domain AY555_RS08200 PF03030 Inorganic H+ pyrophosphatase AY555_RS08220 PF02504 Fatty acid synthesis protein AY555_RS08225 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AY555_RS08225 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AY555_RS08230 PF00216 Bacterial DNA-binding protein AY555_RS08235 PF13411 MerR HTH family regulatory protein AY555_RS08245 PF00753 Metallo-beta-lactamase superfamily AY555_RS08245 PF12706 Beta-lactamase superfamily domain AY555_RS08250 PF13677 Membrane MotB of proton-channel complex MotA/MotB AY555_RS08250 PF00691 OmpA family AY555_RS08255 PF01618 MotA/TolQ/ExbB proton channel family AY555_RS08265 PF05175 Methyltransferase small domain AY555_RS08270 PF17149 Periplasmic sensor domain found in signal transduction proteins AY555_RS08270 PF00672 HAMP domain AY555_RS08270 PF00512 His Kinase A (phospho-acceptor) domain AY555_RS08270 PF01627 Hpt domain AY555_RS08270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS08270 PF00072 Response regulator receiver domain AY555_RS08275 PF01578 Cytochrome C assembly protein AY555_RS08280 PF01207 Dihydrouridine synthase (Dus) AY555_RS08285 PF02954 Bacterial regulatory protein, Fis family AY555_RS08285 PF00072 Response regulator receiver domain AY555_RS08285 PF00158 Sigma-54 interaction domain AY555_RS08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS08290 PF00672 HAMP domain AY555_RS08295 PF02954 Bacterial regulatory protein, Fis family AY555_RS08295 PF00158 Sigma-54 interaction domain AY555_RS08295 PF00072 Response regulator receiver domain AY555_RS08300 PF02254 TrkA-N domain AY555_RS08300 PF02080 TrkA-C domain AY555_RS08305 PF13419 Haloacid dehalogenase-like hydrolase AY555_RS08310 PF17209 Hfq protein AY555_RS08315 PF01926 50S ribosome-binding GTPase AY555_RS08315 PF13167 GTP-binding GTPase N-terminal AY555_RS08315 PF16360 GTP-binding GTPase Middle Region AY555_RS08320 PF00459 Inositol monophosphatase family AY555_RS08325 PF01134 Glucose inhibited division protein A AY555_RS08340 PF02699 Preprotein translocase subunit AY555_RS08345 PF04430 Protein of unknown function (DUF498/DUF598) AY555_RS08350 PF02542 YgbB family AY555_RS08350 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AY555_RS08355 PF00583 Acetyltransferase (GNAT) family AY555_RS08355 PF13380 CoA binding domain AY555_RS08355 PF13607 Succinyl-CoA ligase like flavodoxin domain AY555_RS08375 PF02321 Outer membrane efflux protein AY555_RS08385 PF00133 tRNA synthetases class I (I, L, M and V) AY555_RS08385 PF10458 Valyl tRNA synthetase tRNA binding arm AY555_RS08385 PF08264 Anticodon-binding domain of tRNA AY555_RS08410 PF01757 Acyltransferase family AY555_RS08445 PF13406 Transglycosylase SLT domain AY555_RS08450 PF05036 Sporulation related domain AY555_RS08450 PF03330 Lytic transglycolase AY555_RS08455 PF00768 D-alanyl-D-alanine carboxypeptidase AY555_RS08455 PF07943 Penicillin-binding protein 5, C-terminal domain AY555_RS08460 PF02223 Thymidylate kinase AY555_RS08465 PF09115 DNA polymerase III, delta subunit, C terminal AY555_RS08470 PF09334 tRNA synthetases class I (M) AY555_RS08475 PF01026 TatD related DNase AY555_RS08485 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AY555_RS08485 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AY555_RS08490 PF01593 Flavin containing amine oxidoreductase AY555_RS08515 PF01521 Iron-sulphur cluster biosynthesis AY555_RS08520 PF01966 HD domain AY555_RS08520 PF13286 Phosphohydrolase-associated domain AY555_RS08525 PF05746 DALR anticodon binding domain AY555_RS08525 PF03485 Arginyl tRNA synthetase N terminal domain AY555_RS08525 PF00750 tRNA synthetases class I (R) AY555_RS08535 PF00933 Glycosyl hydrolase family 3 N terminal domain AY555_RS08535 PF01915 Glycosyl hydrolase family 3 C-terminal domain AY555_RS08540 PF02163 Peptidase family M50 AY555_RS08555 PF05958 tRNA (Uracil-5-)-methyltransferase AY555_RS08565 PF03819 MazG nucleotide pyrophosphohydrolase domain AY555_RS08580 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AY555_RS08585 PF01467 Cytidylyltransferase-like AY555_RS08590 PF03989 DNA gyrase C-terminal domain, beta-propeller AY555_RS08590 PF00521 DNA gyrase/topoisomerase IV, subunit A AY555_RS08595 PF00436 Single-strand binding protein family AY555_RS08600 PF17755 UvrA DNA-binding domain AY555_RS08600 PF17760 UvrA interaction domain AY555_RS08605 PF01551 Peptidase family M23 AY555_RS08605 PF01476 LysM domain AY555_RS08615 PF01975 Survival protein SurE AY555_RS08620 PF02403 Seryl-tRNA synthetase N-terminal domain AY555_RS08620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AY555_RS08625 PF00902 Sec-independent protein translocase protein (TatC) AY555_RS08630 PF02416 mttA/Hcf106 family AY555_RS08635 PF02416 mttA/Hcf106 family AY555_RS08640 PF08402 TOBE domain AY555_RS08640 PF00005 ABC transporter AY555_RS08655 PF03461 TRCF domain AY555_RS08655 PF02559 CarD-like/TRCF domain AY555_RS08655 PF00270 DEAD/DEAH box helicase AY555_RS08655 PF00271 Helicase conserved C-terminal domain AY555_RS08655 PF17757 UvrB interaction domain AY555_RS08660 PF03937 Flavinator of succinate dehydrogenase AY555_RS08665 PF00271 Helicase conserved C-terminal domain AY555_RS08665 PF00270 DEAD/DEAH box helicase AY555_RS08665 PF17191 RecG wedge domain AY555_RS08685 PF17770 Ribonuclease J C-terminal domain AY555_RS08685 PF12706 Beta-lactamase superfamily domain AY555_RS08685 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AY555_RS08690 PF03309 Type III pantothenate kinase AY555_RS08695 PF02237 Biotin protein ligase C terminal domain AY555_RS08695 PF03099 Biotin/lipoate A/B protein ligase family AY555_RS08700 PF00361 Proton-conducting membrane transporter AY555_RS08705 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AY555_RS08705 PF00361 Proton-conducting membrane transporter AY555_RS08710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AY555_RS08710 PF00361 Proton-conducting membrane transporter AY555_RS08715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AY555_RS08720 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AY555_RS08725 PF12838 4Fe-4S dicluster domain AY555_RS08730 PF00146 NADH dehydrogenase AY555_RS08735 PF00384 Molybdopterin oxidoreductase AY555_RS08735 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AY555_RS08735 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AY555_RS08740 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AY555_RS08740 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AY555_RS08740 PF10531 SLBB domain AY555_RS08750 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AY555_RS08755 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AY555_RS08760 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AY555_RS08765 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AY555_RS08770 PF03364 Polyketide cyclase / dehydrase and lipid transport AY555_RS08790 PF00291 Pyridoxal-phosphate dependent enzyme AY555_RS08790 PF00571 CBS domain AY555_RS08795 PF01053 Cys/Met metabolism PLP-dependent enzyme AY555_RS08800 PF01668 SmpB protein AY555_RS08805 PF00701 Dihydrodipicolinate synthetase family AY555_RS08810 PF14718 Soluble lytic murein transglycosylase L domain AY555_RS08810 PF01464 Transglycosylase SLT domain AY555_RS08825 PF13291 ACT domain AY555_RS08825 PF04607 Region found in RelA / SpoT proteins AY555_RS08825 PF02824 TGS domain AY555_RS08830 PF01192 RNA polymerase Rpb6 AY555_RS08835 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AY555_RS08845 PF03167 Uracil DNA glycosylase superfamily AY555_RS08850 PF00216 Bacterial DNA-binding protein AY555_RS08855 PF02190 ATP-dependent protease La (LON) substrate-binding domain AY555_RS08855 PF00004 ATPase family associated with various cellular activities (AAA) AY555_RS08855 PF05362 Lon protease (S16) C-terminal proteolytic domain AY555_RS08865 PF03952 Enolase, N-terminal domain AY555_RS08865 PF00113 Enolase, C-terminal TIM barrel domain AY555_RS08870 PF00793 DAHP synthetase I family AY555_RS08875 PF06418 CTP synthase N-terminus AY555_RS08875 PF00117 Glutamine amidotransferase class-I AY555_RS08880 PF03840 Preprotein translocase SecG subunit AY555_RS08885 PF00121 Triosephosphate isomerase AY555_RS08895 PF13145 PPIC-type PPIASE domain AY555_RS08900 PF00425 chorismate binding enzyme AY555_RS08900 PF04715 Anthranilate synthase component I, N terminal region AY555_RS08905 PF00403 Heavy-metal-associated domain AY555_RS08910 PF04748 Divergent polysaccharide deacetylase AY555_RS08915 PF00403 Heavy-metal-associated domain AY555_RS08920 PF00117 Glutamine amidotransferase class-I AY555_RS08925 PF00591 Glycosyl transferase family, a/b domain AY555_RS08925 PF02885 Glycosyl transferase family, helical bundle domain AY555_RS08930 PF00218 Indole-3-glycerol phosphate synthase AY555_RS08935 PF01726 LexA DNA binding domain AY555_RS08935 PF00717 Peptidase S24-like AY555_RS08940 PF03772 Competence protein AY555_RS08940 PF00753 Metallo-beta-lactamase superfamily AY555_RS08940 PF13567 Domain of unknown function (DUF4131) AY555_RS08945 PF00749 tRNA synthetases class I (E and Q), catalytic domain AY555_RS08950 PF00285 Citrate synthase, C-terminal domain AY555_RS08960 PF03144 Elongation factor Tu domain 2 AY555_RS08960 PF16658 Class II release factor RF3, C-terminal domain AY555_RS08960 PF00009 Elongation factor Tu GTP binding domain AY555_RS08975 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS08980 PF13416 Bacterial extracellular solute-binding protein AY555_RS08985 PF01406 tRNA synthetases class I (C) catalytic domain AY555_RS08990 PF00563 EAL domain AY555_RS08990 PF00990 Diguanylate cyclase, GGDEF domain AY555_RS08990 PF03707 Bacterial signalling protein N terminal repeat AY555_RS08995 PF03949 Malic enzyme, NAD binding domain AY555_RS08995 PF01515 Phosphate acetyl/butaryl transferase AY555_RS08995 PF00390 Malic enzyme, N-terminal domain AY555_RS09000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AY555_RS09000 PF18140 Propionyl-coenzyme A carboxylase BT domain AY555_RS09000 PF02785 Biotin carboxylase C-terminal domain AY555_RS09000 PF00289 Biotin carboxylase, N-terminal domain AY555_RS09000 PF00364 Biotin-requiring enzyme AY555_RS09005 PF01039 Carboxyl transferase domain AY555_RS09020 PF08240 Alcohol dehydrogenase GroES-like domain AY555_RS09020 PF00107 Zinc-binding dehydrogenase AY555_RS09035 PF00501 AMP-binding enzyme AY555_RS09045 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) AY555_RS09055 PF02887 Pyruvate kinase, alpha/beta domain AY555_RS09055 PF00224 Pyruvate kinase, barrel domain AY555_RS09070 PF00271 Helicase conserved C-terminal domain AY555_RS09070 PF00270 DEAD/DEAH box helicase AY555_RS09075 PF02230 Phospholipase/Carboxylesterase AY555_RS09085 PF01965 DJ-1/PfpI family AY555_RS09090 PF06965 Na+/H+ antiporter 1 AY555_RS09110 PF07690 Major Facilitator Superfamily AY555_RS09115 PF02934 GatB/GatE catalytic domain AY555_RS09115 PF02637 GatB domain AY555_RS09120 PF01425 Amidase AY555_RS09125 PF02686 Glu-tRNAGln amidotransferase C subunit AY555_RS09130 PF03652 Holliday junction resolvase AY555_RS09135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AY555_RS09135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AY555_RS09140 PF01979 Amidohydrolase family AY555_RS09145 PF02660 Glycerol-3-phosphate acyltransferase AY555_RS09150 PF17763 Glutaminase/Asparaginase C-terminal domain AY555_RS09150 PF00710 Asparaginase, N-terminal AY555_RS09155 PF17782 DprA winged helix domain AY555_RS09155 PF02481 DNA recombination-mediator protein A AY555_RS09160 PF13368 Topoisomerase C-terminal repeat AY555_RS09160 PF01751 Toprim domain AY555_RS09160 PF01131 DNA topoisomerase AY555_RS09160 PF01396 Topoisomerase DNA binding C4 zinc finger AY555_RS09165 PF17876 Cold shock domain AY555_RS09165 PF08461 Ribonuclease R winged-helix domain AY555_RS09165 PF08206 Ribonuclease B OB domain AY555_RS09165 PF00773 RNB domain AY555_RS09165 PF00575 S1 RNA binding domain AY555_RS09170 PF13180 PDZ domain AY555_RS09170 PF03572 Peptidase family S41 AY555_RS09175 PF00471 Ribosomal protein L33 AY555_RS09180 PF00072 Response regulator receiver domain AY555_RS09185 PF04241 Protein of unknown function (DUF423) AY555_RS09200 PF00709 Adenylosuccinate synthetase AY555_RS09215 PF07196 Flagellin hook IN motif AY555_RS09215 PF00460 Flagella basal body rod protein AY555_RS09215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AY555_RS09215 PF07559 Flagellar basal body protein FlaE AY555_RS09220 PF05690 Thiazole biosynthesis protein ThiG AY555_RS09220 PF02597 ThiS family AY555_RS09225 PF02597 ThiS family AY555_RS09225 PF05690 Thiazole biosynthesis protein ThiG AY555_RS09230 PF01220 Dehydroquinase class II AY555_RS09235 PF00364 Biotin-requiring enzyme AY555_RS09240 PF00289 Biotin carboxylase, N-terminal domain AY555_RS09240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AY555_RS09240 PF02785 Biotin carboxylase C-terminal domain AY555_RS09245 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AY555_RS09270 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AY555_RS09270 PF02867 Ribonucleotide reductase, barrel domain AY555_RS09275 PF04055 Radical SAM superfamily AY555_RS09275 PF11842 Domain of unknown function (DUF3362) AY555_RS09275 PF08497 Radical SAM N-terminal AY555_RS09285 PF17991 Thioredoxin like C-terminal domain AY555_RS09285 PF00578 AhpC/TSA family AY555_RS09285 PF02683 Cytochrome C biogenesis protein transmembrane region AY555_RS09290 PF00155 Aminotransferase class I and II AY555_RS09295 PF00834 Ribulose-phosphate 3 epimerase family AY555_RS09300 PF01116 Fructose-bisphosphate aldolase class-II AY555_RS09305 PF00456 Transketolase, thiamine diphosphate binding domain AY555_RS09305 PF02780 Transketolase, C-terminal domain AY555_RS09305 PF02779 Transketolase, pyrimidine binding domain AY555_RS09310 PF03707 Bacterial signalling protein N terminal repeat AY555_RS09310 PF00990 Diguanylate cyclase, GGDEF domain AY555_RS09310 PF00563 EAL domain AY555_RS09320 PF00072 Response regulator receiver domain AY555_RS09320 PF00196 Bacterial regulatory proteins, luxR family AY555_RS09325 PF00216 Bacterial DNA-binding protein AY555_RS09335 PF03963 Flagellar hook capping protein - N-terminal region AY555_RS09335 PF13860 FlgD Ig-like domain AY555_RS09335 PF13861 FlgD Tudor-like domain AY555_RS09340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AY555_RS09340 PF00460 Flagella basal body rod protein AY555_RS09340 PF07559 Flagellar basal body protein FlaE AY555_RS09345 PF01514 Secretory protein of YscJ/FliF family AY555_RS09345 PF08345 Flagellar M-ring protein C-terminal AY555_RS09350 PF01706 FliG C-terminal domain AY555_RS09350 PF14841 FliG middle domain AY555_RS09350 PF14842 FliG N-terminal domain AY555_RS09360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AY555_RS09365 PF01618 MotA/TolQ/ExbB proton channel family AY555_RS09370 PF00158 Sigma-54 interaction domain AY555_RS09370 PF02954 Bacterial regulatory protein, Fis family AY555_RS09375 PF00771 FHIPEP family AY555_RS09380 PF00448 SRP54-type protein, GTPase domain AY555_RS09380 PF02881 SRP54-type protein, helical bundle domain AY555_RS09385 PF10609 NUBPL iron-transfer P-loop NTPase AY555_RS09395 PF00226 DnaJ domain AY555_RS09395 PF01556 DnaJ C terminal domain AY555_RS09400 PF01618 MotA/TolQ/ExbB proton channel family AY555_RS09405 PF02472 Biopolymer transport protein ExbD/TolR AY555_RS09425 PF18269 T3SS EscN ATPase C-terminal domain AY555_RS09425 PF02874 ATP synthase alpha/beta family, beta-barrel domain AY555_RS09425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AY555_RS09430 PF00072 Response regulator receiver domain AY555_RS09430 PF00486 Transcriptional regulatory protein, C terminal AY555_RS09435 PF08543 Phosphomethylpyrimidine kinase AY555_RS09440 PF00199 Catalase AY555_RS09440 PF06628 Catalase-related immune-responsive AY555_RS09450 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AY555_RS09460 PF02910 Fumarate reductase flavoprotein C-term AY555_RS09460 PF00890 FAD binding domain AY555_RS09465 PF13085 2Fe-2S iron-sulfur cluster binding domain AY555_RS09470 PF02272 DHHA1 domain AY555_RS09470 PF17768 RecJ OB domain AY555_RS09470 PF01368 DHH family AY555_RS09470 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AY555_RS09475 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AY555_RS09480 PF01842 ACT domain AY555_RS09480 PF00742 Homoserine dehydrogenase AY555_RS09480 PF03447 Homoserine dehydrogenase, NAD binding domain AY555_RS09485 PF00155 Aminotransferase class I and II AY555_RS09495 PF00561 alpha/beta hydrolase fold AY555_RS09495 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AY555_RS09500 PF00132 Bacterial transferase hexapeptide (six repeats) AY555_RS09515 PF00196 Bacterial regulatory proteins, luxR family AY555_RS09515 PF03472 Autoinducer binding domain AY555_RS09520 PF01381 Helix-turn-helix AY555_RS09535 PF00206 Lyase AY555_RS09535 PF10397 Adenylosuccinate lyase C-terminus AY555_RS09545 PF01259 SAICAR synthetase AY555_RS09550 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AY555_RS09560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AY555_RS09560 PF02769 AIR synthase related protein, C-terminal domain AY555_RS09560 PF00586 AIR synthase related protein, N-terminal domain AY555_RS09585 PF00156 Phosphoribosyl transferase domain AY555_RS09590 PF01739 CheR methyltransferase, SAM binding domain AY555_RS09590 PF03705 CheR methyltransferase, all-alpha domain AY555_RS09595 PF01339 CheB methylesterase AY555_RS09595 PF00072 Response regulator receiver domain AY555_RS09600 PF00486 Transcriptional regulatory protein, C terminal AY555_RS09600 PF00072 Response regulator receiver domain AY555_RS09605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AY555_RS09605 PF00072 Response regulator receiver domain AY555_RS09605 PF02895 Signal transducing histidine kinase, homodimeric domain AY555_RS09605 PF01627 Hpt domain AY555_RS09605 PF01584 CheW-like domain AY555_RS09610 PF10090 Histidine phosphotransferase C-terminal domain AY555_RS09615 PF08482 ATP-dependent helicase C-terminal AY555_RS09615 PF00270 DEAD/DEAH box helicase AY555_RS09615 PF04408 Helicase associated domain (HA2) AY555_RS09615 PF00271 Helicase conserved C-terminal domain AY555_RS09620 PF00155 Aminotransferase class I and II AY555_RS09630 PF13649 Methyltransferase domain AY555_RS09635 PF13649 Methyltransferase domain AY555_RS09640 PF00202 Aminotransferase class-III AY555_RS09645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS09645 PF08447 PAS fold AY555_RS09645 PF13426 PAS domain AY555_RS09650 PF17674 HHH domain AY555_RS09650 PF00575 S1 RNA binding domain AY555_RS09650 PF09371 Tex-like protein N-terminal domain AY555_RS09650 PF16921 Tex protein YqgF-like domain AY555_RS09655 PF03449 Transcription elongation factor, N-terminal AY555_RS09655 PF01272 Transcription elongation factor, GreA/GreB, C-term AY555_RS09665 PF00005 ABC transporter AY555_RS09675 PF03070 TENA/THI-4/PQQC family AY555_RS09680 PF01979 Amidohydrolase family AY555_RS09685 PF13537 Glutamine amidotransferase domain AY555_RS09685 PF00733 Asparagine synthase AY555_RS09690 PF13439 Glycosyltransferase Family 4 AY555_RS09690 PF00534 Glycosyl transferases group 1 AY555_RS09695 PF00535 Glycosyl transferase family 2 AY555_RS09715 PF12729 Four helix bundle sensory module for signal transduction AY555_RS09715 PF00672 HAMP domain AY555_RS09715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AY555_RS09720 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AY555_RS09720 PF02896 PEP-utilising enzyme, TIM barrel domain AY555_RS09720 PF00391 PEP-utilising enzyme, mobile domain AY555_RS09725 PF05746 DALR anticodon binding domain AY555_RS09725 PF02092 Glycyl-tRNA synthetase beta subunit AY555_RS09730 PF02091 Glycyl-tRNA synthetase alpha subunit AY555_RS09740 PF00348 Polyprenyl synthetase AY555_RS09760 PF00163 Ribosomal protein S4/S9 N-terminal domain AY555_RS09760 PF01479 S4 domain AY555_RS09765 PF01226 Formate/nitrite transporter AY555_RS09780 PF00588 SpoU rRNA Methylase family AY555_RS09795 PF00206 Lyase AY555_RS09795 PF14698 Argininosuccinate lyase C-terminal AY555_RS09800 PF00764 Arginosuccinate synthase AY555_RS09805 PF00005 ABC transporter AY555_RS09810 PF00528 Binding-protein-dependent transport system inner membrane component AY555_RS09815 PF00497 Bacterial extracellular solute-binding proteins, family 3 AY555_RS09820 PF01316 Arginine repressor, DNA binding domain AY555_RS09820 PF02863 Arginine repressor, C-terminal domain AY555_RS09830 PF00534 Glycosyl transferases group 1 AY555_RS09830 PF13439 Glycosyltransferase Family 4 AY555_RS09840 PF13439 Glycosyltransferase Family 4 AY555_RS09840 PF00534 Glycosyl transferases group 1 AY555_RS09855 PF02706 Chain length determinant protein AY555_RS09855 PF13807 G-rich domain on putative tyrosine kinase AY555_RS09855 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AY555_RS09880 PF00474 Sodium:solute symporter family AY555_RS09885 PF00849 RNA pseudouridylate synthase AY555_RS09890 PF08267 Cobalamin-independent synthase, N-terminal domain AY555_RS09890 PF01717 Cobalamin-independent synthase, Catalytic domain AY555_RS09905 PF00535 Glycosyl transferase family 2 AY555_RS09915 PF04055 Radical SAM superfamily AY555_RS09915 PF18693 TRAM domain AY555_RS09915 PF00919 Uncharacterized protein family UPF0004 AY555_RS09945 PF02685 Glucokinase AY555_RS10720 PF04002 RadC-like JAB domain AY555_RS10795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AY555_RS10795 PF02770 Acyl-CoA dehydrogenase, middle domain AY555_RS10795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AY555_RS10800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AY555_RS10800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AY555_RS10800 PF02770 Acyl-CoA dehydrogenase, middle domain AY555_RS10855 PF16193 AAA C-terminal domain AY555_RS10855 PF12002 MgsA AAA+ ATPase C terminal AY555_RS10855 PF00004 ATPase family associated with various cellular activities (AAA) AY555_RS11000 PF01040 UbiA prenyltransferase family AY555_RS11170 PF00171 Aldehyde dehydrogenase family AY555_RS11170 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AY555_RS11170 PF14850 DNA-binding domain of Proline dehydrogenase AY555_RS11170 PF01619 Proline dehydrogenase AY555_RS11400 PF00890 FAD binding domain AY555_RS11400 PF02910 Fumarate reductase flavoprotein C-term