AY555_RS00035 SM00382 ATPases associated with a variety of cellular activities AY555_RS00040 SM00091 PAS domain AY555_RS00040 SM00387 Histidine kinase-like ATPases AY555_RS00040 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS00040 SM00448 cheY-homologous receiver domain AY555_RS00095 SM00344 helix_turn_helix ASNC type AY555_RS00120 SM00448 cheY-homologous receiver domain AY555_RS00155 SM00858 AY555_RS00155 AY555_RS00255 SM00986 Uracil DNA glycosylase superfamily AY555_RS00255 SM00987 UreE urease accessory protein, C-terminal domain AY555_RS00265 SM00028 Tetratricopeptide repeats AY555_RS00290 SM00899 AY555_RS00290 AY555_RS00305 SM00869 Autotransporter beta-domain AY555_RS00320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS00320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS00360 SM00387 Histidine kinase-like ATPases AY555_RS00360 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS00420 SM00448 cheY-homologous receiver domain AY555_RS00420 SM00850 LytTr DNA-binding domain AY555_RS00510 SM00650 Ribosomal RNA adenine dimethylases AY555_RS00515 SM00072 Guanylate kinase homologues. AY555_RS00535 SM00052 Putative diguanylate phosphodiesterase AY555_RS00535 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AY555_RS00535 SM00091 PAS domain AY555_RS00535 SM00267 diguanylate cyclase AY555_RS00560 SM00564 beta-propeller repeat AY555_RS00600 SM00849 Metallo-beta-lactamase superfamily AY555_RS00650 SM00382 ATPases associated with a variety of cellular activities AY555_RS00650 SM01086 C-terminal, D2-small domain, of ClpB protein AY555_RS00685 SM00984 UDP binding domain AY555_RS00735 SM00448 cheY-homologous receiver domain AY555_RS00745 SM00450 Rhodanese Homology Domain AY555_RS00760 SM00947 Carbonic anhydrase AY555_RS00795 SM00859 Semialdehyde dehydrogenase, NAD binding domain AY555_RS00820 SM00363 S4 RNA-binding domain AY555_RS00830 SM00382 ATPases associated with a variety of cellular activities AY555_RS00835 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AY555_RS00845 SM00662 RNA polymerases D AY555_RS00910 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AY555_RS00915 SM01374 AY555_RS00915 AY555_RS00935 SM00322 K homology RNA-binding domain AY555_RS00950 SM01382 AY555_RS00950 AY555_RS00950 SM01383 AY555_RS00950 AY555_RS00970 SM01403 AY555_RS00970 AY555_RS00980 SM00838 Elongation factor G C-terminus AY555_RS00980 SM00889 Elongation factor G, domain IV AY555_RS00995 SM00663 RNA polymerase I subunit A N-terminus AY555_RS01020 SM00649 Ribosomal protein L11/L12 AY555_RS01025 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AY555_RS01025 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AY555_RS01055 SM00967 RNA 2'-O ribose methyltransferase substrate binding AY555_RS01100 SM00450 Rhodanese Homology Domain AY555_RS01110 SM00347 helix_turn_helix multiple antibiotic resistance protein AY555_RS01155 SM00886 Stress responsive A/B Barrel Domain AY555_RS01165 SM01018 B12 binding domain AY555_RS01175 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AY555_RS01240 SM00382 ATPases associated with a variety of cellular activities AY555_RS01260 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AY555_RS01260 SM00091 PAS domain AY555_RS01260 SM00387 Histidine kinase-like ATPases AY555_RS01260 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS01270 SM00400 zinc finger AY555_RS01270 SM00493 AY555_RS01270 AY555_RS01285 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AY555_RS01290 SM00851 MGS-like domain AY555_RS01290 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AY555_RS01305 SM00344 helix_turn_helix ASNC type AY555_RS01330 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS01355 SM00100 Cyclic nucleotide-monophosphate binding domain AY555_RS01415 SM00387 Histidine kinase-like ATPases AY555_RS01420 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AY555_RS01420 SM00091 PAS domain AY555_RS01420 SM00387 Histidine kinase-like ATPases AY555_RS01455 SM01329 AY555_RS01455 AY555_RS01485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS01485 SM00387 Histidine kinase-like ATPases AY555_RS01485 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS01490 SM00448 cheY-homologous receiver domain AY555_RS01490 SM00862 Transcriptional regulatory protein, C terminal AY555_RS01495 SM00347 helix_turn_helix multiple antibiotic resistance protein AY555_RS01515 SM00382 ATPases associated with a variety of cellular activities AY555_RS01555 SM00905 Dihydroneopterin aldolase AY555_RS01560 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AY555_RS01560 SM00465 GIY-YIG type nucleases (URI domain) AY555_RS01575 SM00507 HNH nucleases AY555_RS01585 SM00257 Lysin motif AY555_RS01630 SM00116 Domain in cystathionine beta-synthase and other proteins. AY555_RS01630 SM01091 Transporter associated domain AY555_RS01640 SM00382 ATPases associated with a variety of cellular activities AY555_RS01640 SM00962 SRP54-type protein, GTPase domain AY555_RS01640 SM00963 SRP54-type protein, helical bundle domain AY555_RS01670 SM00116 Domain in cystathionine beta-synthase and other proteins. AY555_RS01685 SM00271 DnaJ molecular chaperone homology domain AY555_RS01690 SM00382 ATPases associated with a variety of cellular activities AY555_RS01695 SM00327 von Willebrand factor (vWF) type A domain AY555_RS01740 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AY555_RS01745 SM00244 prohibitin homologues AY555_RS01750 SM00244 prohibitin homologues AY555_RS01790 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AY555_RS01815 SM00382 ATPases associated with a variety of cellular activities AY555_RS01870 SM00363 S4 RNA-binding domain AY555_RS01885 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS01910 SM00822 AY555_RS01910 AY555_RS01920 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS01920 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AY555_RS01940 SM00859 Semialdehyde dehydrogenase, NAD binding domain AY555_RS01985 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AY555_RS02020 SM00448 cheY-homologous receiver domain AY555_RS02020 SM00862 Transcriptional regulatory protein, C terminal AY555_RS02025 SM00387 Histidine kinase-like ATPases AY555_RS02050 SM00052 Putative diguanylate phosphodiesterase AY555_RS02050 SM00267 diguanylate cyclase AY555_RS02065 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AY555_RS02080 SM00859 Semialdehyde dehydrogenase, NAD binding domain AY555_RS02090 SM00091 PAS domain AY555_RS02140 SM00421 helix_turn_helix, Lux Regulon AY555_RS02185 SM00421 helix_turn_helix, Lux Regulon AY555_RS02185 SM00448 cheY-homologous receiver domain AY555_RS02240 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS02245 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AY555_RS02245 SM00091 PAS domain AY555_RS02255 SM00382 ATPases associated with a variety of cellular activities AY555_RS02265 SM00493 AY555_RS02265 AY555_RS02270 SM00357 Cold shock protein domain AY555_RS02280 SM00382 ATPases associated with a variety of cellular activities AY555_RS02305 SM00448 cheY-homologous receiver domain AY555_RS02305 SM00862 Transcriptional regulatory protein, C terminal AY555_RS02320 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS02320 SM00876 Biotin and Thiamin Synthesis associated domain AY555_RS02335 SM00382 ATPases associated with a variety of cellular activities AY555_RS02355 SM00382 ATPases associated with a variety of cellular activities AY555_RS02365 SM00347 helix_turn_helix multiple antibiotic resistance protein AY555_RS02395 SM00873 B3/4 domain AY555_RS02395 SM00874 tRNA synthetase B5 domain AY555_RS02395 SM00896 Ferredoxin-fold anticodon binding domain AY555_RS02410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AY555_RS02430 SM00341 Helicase and RNase D C-terminal AY555_RS02430 SM00487 DEAD-like helicases superfamily AY555_RS02430 SM00490 helicase superfamily c-terminal domain AY555_RS02430 SM00956 AY555_RS02430 AY555_RS02435 SM00387 Histidine kinase-like ATPases AY555_RS02435 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS02435 SM00448 cheY-homologous receiver domain AY555_RS02445 SM00478 endonuclease III AY555_RS02455 SM00382 ATPases associated with a variety of cellular activities AY555_RS02470 SM00563 Phosphate acyltransferases AY555_RS02475 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AY555_RS02475 SM00474 3'-5' exonuclease AY555_RS02475 SM00475 5'-3' exonuclease AY555_RS02475 SM00482 DNA polymerase A domain AY555_RS02485 SM00382 ATPases associated with a variety of cellular activities AY555_RS02495 SM00091 PAS domain AY555_RS02560 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AY555_RS02625 SM00422 helix_turn_helix, mercury resistance AY555_RS02625 SM00857 Resolvase, N terminal domain AY555_RS02635 SM00984 UDP binding domain AY555_RS02665 SM00316 Ribosomal protein S1-like RNA-binding domain AY555_RS02670 SM00411 bacterial (prokaryotic) histone like domain AY555_RS02755 SM00318 Staphylococcal nuclease homologues AY555_RS02830 SM01040 BRO family, N-terminal domain AY555_RS02835 SM01040 BRO family, N-terminal domain AY555_RS02860 SM00885 D5 N terminal like AY555_RS02865 SM00400 zinc finger AY555_RS02885 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS02980 SM00996 S-adenosyl-L-homocysteine hydrolase AY555_RS02980 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AY555_RS02990 SM00822 AY555_RS02990 AY555_RS03010 SM00671 Sel1-like repeats. AY555_RS03050 SM00382 ATPases associated with a variety of cellular activities AY555_RS03065 SM00116 Domain in cystathionine beta-synthase and other proteins. AY555_RS03070 SM00474 3'-5' exonuclease AY555_RS03090 SM00478 endonuclease III AY555_RS03090 SM00525 AY555_RS03090 AY555_RS03100 SM00932 Scaffold protein Nfu/NifU N terminal AY555_RS03140 SM00382 ATPases associated with a variety of cellular activities AY555_RS03235 SM00382 ATPases associated with a variety of cellular activities AY555_RS03250 SM00028 Tetratricopeptide repeats AY555_RS03340 SM00984 UDP binding domain AY555_RS03390 SM00248 ankyrin repeats AY555_RS03430 SM00382 ATPases associated with a variety of cellular activities AY555_RS03430 SM00843 AY555_RS03430 AY555_RS03470 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AY555_RS03470 SM00245 tail specific protease AY555_RS03490 SM00448 cheY-homologous receiver domain AY555_RS03490 SM00862 Transcriptional regulatory protein, C terminal AY555_RS03540 SM00893 Electron transfer flavoprotein domain AY555_RS03545 SM00893 Electron transfer flavoprotein domain AY555_RS03570 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS03580 SM00014 Acid phosphatase homologues AY555_RS03595 SM00226 Low molecular weight phosphatase family AY555_RS03605 SM00382 ATPases associated with a variety of cellular activities AY555_RS03605 SM00962 SRP54-type protein, GTPase domain AY555_RS03605 SM00963 SRP54-type protein, helical bundle domain AY555_RS03610 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS03620 SM01058 CarD-like/TRCF domain AY555_RS03690 SM00463 Small MutS-related domain AY555_RS03695 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS03710 SM00925 MltA specific insert domain AY555_RS03715 SM00978 AY555_RS03715 AY555_RS03730 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS03755 SM01228 AY555_RS03755 AY555_RS03770 SM00470 ParB-like nuclease domain AY555_RS03785 SM00798 AICARFT/IMPCHase bienzyme AY555_RS03785 SM00851 MGS-like domain AY555_RS03790 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS03805 SM00382 ATPases associated with a variety of cellular activities AY555_RS03805 SM01086 C-terminal, D2-small domain, of ClpB protein AY555_RS03810 SM00479 AY555_RS03810 AY555_RS03850 SM00357 Cold shock protein domain AY555_RS03850 SM00382 ATPases associated with a variety of cellular activities AY555_RS03850 SM00959 Rho termination factor, N-terminal domain AY555_RS03935 SM00852 Probable molybdopterin binding domain AY555_RS03955 SM00563 Phosphate acyltransferases AY555_RS04005 SM00316 Ribosomal protein S1-like RNA-binding domain AY555_RS04005 SM00322 K homology RNA-binding domain AY555_RS04030 SM01387 AY555_RS04030 AY555_RS04035 SM00316 Ribosomal protein S1-like RNA-binding domain AY555_RS04035 SM00322 K homology RNA-binding domain AY555_RS04175 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS04185 SM00116 Domain in cystathionine beta-synthase and other proteins. AY555_RS04185 SM01091 Transporter associated domain AY555_RS04200 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS04225 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AY555_RS04225 SM00534 ATPase domain of DNA mismatch repair MUTS family AY555_RS04235 SM00919 Malic enzyme, NAD binding domain AY555_RS04235 SM01274 AY555_RS04235 AY555_RS04240 SM00387 Histidine kinase-like ATPases AY555_RS04240 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS04265 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS04270 SM00382 ATPases associated with a variety of cellular activities AY555_RS04280 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AY555_RS04295 SM00382 ATPases associated with a variety of cellular activities AY555_RS04300 SM00382 ATPases associated with a variety of cellular activities AY555_RS04315 SM00382 ATPases associated with a variety of cellular activities AY555_RS04365 SM00271 DnaJ molecular chaperone homology domain AY555_RS04370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS04370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS04390 SM00387 Histidine kinase-like ATPases AY555_RS04390 SM00433 TopoisomeraseII AY555_RS04395 SM00382 ATPases associated with a variety of cellular activities AY555_RS04400 SM00480 DNA polymerase III beta subunit AY555_RS04420 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AY555_RS04420 SM01232 AY555_RS04420 AY555_RS04445 SM00382 ATPases associated with a variety of cellular activities AY555_RS04445 SM00760 Bacterial dnaA protein helix-turn-helix domain AY555_RS04515 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS04585 SM00382 ATPases associated with a variety of cellular activities AY555_RS04635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS04635 SM00387 Histidine kinase-like ATPases AY555_RS04635 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS04640 SM00448 cheY-homologous receiver domain AY555_RS04640 SM00862 Transcriptional regulatory protein, C terminal AY555_RS04710 SM00382 ATPases associated with a variety of cellular activities AY555_RS04740 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AY555_RS04770 SM00881 CoA binding domain AY555_RS04775 SM00861 Transketolase, pyrimidine binding domain AY555_RS04815 SM00487 DEAD-like helicases superfamily AY555_RS04815 SM00490 helicase superfamily c-terminal domain AY555_RS04835 SM00382 ATPases associated with a variety of cellular activities AY555_RS04890 SM01400 AY555_RS04890 AY555_RS04940 SM00957 SecA DEAD-like domain AY555_RS04940 SM00958 SecA preprotein cross-linking domain AY555_RS04960 SM00822 AY555_RS04960 AY555_RS04975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AY555_RS04975 SM00220 Serine/Threonine protein kinases, catalytic domain AY555_RS04975 SM00387 Histidine kinase-like ATPases AY555_RS04975 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS05020 SM00479 AY555_RS05020 AY555_RS05025 SM00116 Domain in cystathionine beta-synthase and other proteins. AY555_RS05045 SM00271 DnaJ molecular chaperone homology domain AY555_RS05105 SM01209 AY555_RS05105 AY555_RS05105 SM01210 AY555_RS05105 AY555_RS05135 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AY555_RS05150 SM00028 Tetratricopeptide repeats AY555_RS05155 SM00235 Zinc-dependent metalloprotease AY555_RS05195 SM00267 diguanylate cyclase AY555_RS05270 SM00100 Cyclic nucleotide-monophosphate binding domain AY555_RS05270 SM00419 helix_turn_helix, cAMP Regulatory protein AY555_RS05285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS05285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS05285 SM01358 AY555_RS05285 AY555_RS05305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS05305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS05310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS05310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS05320 SM00830 Chorismate mutase type II AY555_RS05330 SM00849 Metallo-beta-lactamase superfamily AY555_RS05340 SM00904 Riboflavin kinase AY555_RS05375 SM00853 MutL C terminal dimerisation domain AY555_RS05375 SM01340 AY555_RS05375 AY555_RS05390 SM00052 Putative diguanylate phosphodiesterase AY555_RS05390 SM00267 diguanylate cyclase AY555_RS05440 SM01152 AY555_RS05440 AY555_RS05515 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS05540 SM00883 Chaperonin 10 Kd subunit AY555_RS05560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS05560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS05570 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS05575 SM00491 AY555_RS05575 AY555_RS05730 SM00382 ATPases associated with a variety of cellular activities AY555_RS05735 SM00562 AY555_RS05735 AY555_RS05770 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS05780 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS05790 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS05795 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS05800 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS05825 SM00382 ATPases associated with a variety of cellular activities AY555_RS05830 SM00382 ATPases associated with a variety of cellular activities AY555_RS05840 SM01005 Alanine racemase, C-terminal domain AY555_RS05845 SM00382 ATPases associated with a variety of cellular activities AY555_RS05865 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AY555_RS05870 SM00822 AY555_RS05870 AY555_RS05880 SM00825 Beta-ketoacyl synthase AY555_RS05910 SM00271 DnaJ molecular chaperone homology domain AY555_RS05930 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS05935 SM00382 ATPases associated with a variety of cellular activities AY555_RS05935 SM00448 cheY-homologous receiver domain AY555_RS06065 SM00292 breast cancer carboxy-terminal domain AY555_RS06065 SM00532 Ligase N family AY555_RS06080 SM00245 tail specific protease AY555_RS06090 SM00864 Tubulin/FtsZ family, GTPase domain AY555_RS06090 SM00865 Tubulin/FtsZ family, C-terminal domain AY555_RS06095 SM00842 Cell division protein FtsA AY555_RS06175 SM00992 Hemimethylated DNA-binding protein YccV like AY555_RS06205 SM00382 ATPases associated with a variety of cellular activities AY555_RS06230 SM00937 AY555_RS06230 AY555_RS06240 SM00646 AY555_RS06240 AY555_RS06245 SM00316 Ribosomal protein S1-like RNA-binding domain AY555_RS06300 SM00116 Domain in cystathionine beta-synthase and other proteins. AY555_RS06300 SM01240 AY555_RS06300 AY555_RS06310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS06310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS06310 SM01358 AY555_RS06310 AY555_RS06320 SM00858 AY555_RS06320 AY555_RS06390 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS06410 SM00487 DEAD-like helicases superfamily AY555_RS06445 SM00482 DNA polymerase A domain AY555_RS06635 SM00226 Low molecular weight phosphatase family AY555_RS06640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AY555_RS06645 SM00387 Histidine kinase-like ATPases AY555_RS06645 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS06655 SM00316 Ribosomal protein S1-like RNA-binding domain AY555_RS06680 SM00382 ATPases associated with a variety of cellular activities AY555_RS06695 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS06700 SM00341 Helicase and RNase D C-terminal AY555_RS06700 SM00474 3'-5' exonuclease AY555_RS06785 SM00363 S4 RNA-binding domain AY555_RS06795 SM00861 Transketolase, pyrimidine binding domain AY555_RS06835 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AY555_RS06860 SM00937 AY555_RS06860 AY555_RS06925 SM00849 Metallo-beta-lactamase superfamily AY555_RS06935 SM00382 ATPases associated with a variety of cellular activities AY555_RS06935 SM01086 C-terminal, D2-small domain, of ClpB protein AY555_RS06975 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS06985 SM00387 Histidine kinase-like ATPases AY555_RS06985 SM00433 TopoisomeraseII AY555_RS07115 SM01133 AY555_RS07115 AY555_RS07185 SM00843 AY555_RS07185 AY555_RS07210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AY555_RS07210 SM00091 PAS domain AY555_RS07210 SM00387 Histidine kinase-like ATPases AY555_RS07210 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS07225 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AY555_RS07225 SM00091 PAS domain AY555_RS07225 SM00387 Histidine kinase-like ATPases AY555_RS07225 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS07230 SM00448 cheY-homologous receiver domain AY555_RS07235 SM00267 diguanylate cyclase AY555_RS07235 SM00448 cheY-homologous receiver domain AY555_RS07240 SM00091 PAS domain AY555_RS07240 SM00387 Histidine kinase-like ATPases AY555_RS07240 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS07240 SM00448 cheY-homologous receiver domain AY555_RS07245 SM00260 Two component signalling adaptor domain AY555_RS07255 SM00344 helix_turn_helix ASNC type AY555_RS07265 SM00420 helix_turn_helix, Deoxyribose operon repressor AY555_RS07265 SM01134 AY555_RS07265 AY555_RS07280 SM01230 AY555_RS07280 AY555_RS07285 SM00881 CoA binding domain AY555_RS07290 SM01091 Transporter associated domain AY555_RS07400 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AY555_RS07430 SM00841 Elongation factor P, C-terminal AY555_RS07430 SM01185 AY555_RS07430 AY555_RS07480 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AY555_RS07485 SM00382 ATPases associated with a variety of cellular activities AY555_RS07530 SM00382 ATPases associated with a variety of cellular activities AY555_RS07590 SM00382 ATPases associated with a variety of cellular activities AY555_RS07615 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AY555_RS07615 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AY555_RS07645 SM00382 ATPases associated with a variety of cellular activities AY555_RS07650 SM00382 ATPases associated with a variety of cellular activities AY555_RS07680 SM01001 AIR carboxylase AY555_RS07740 SM00382 ATPases associated with a variety of cellular activities AY555_RS07755 SM00481 DNA polymerase alpha chain like domain AY555_RS07795 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AY555_RS07805 SM00935 Outer membrane protein (OmpH-like) AY555_RS07940 SM00363 S4 RNA-binding domain AY555_RS07950 SM00487 DEAD-like helicases superfamily AY555_RS07950 SM00490 helicase superfamily c-terminal domain AY555_RS08005 SM00358 Double-stranded RNA binding motif AY555_RS08005 SM00535 Ribonuclease III family AY555_RS08020 SM00434 DNA Topoisomerase IV AY555_RS08040 SM00903 Flavin reductase like domain AY555_RS08075 SM00382 ATPases associated with a variety of cellular activities AY555_RS08075 SM00994 ClpX C4-type zinc finger AY555_RS08075 SM01086 C-terminal, D2-small domain, of ClpB protein AY555_RS08085 SM00861 Transketolase, pyrimidine binding domain AY555_RS08100 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS08130 SM01004 Delta-aminolevulinic acid dehydratase AY555_RS08230 SM00411 bacterial (prokaryotic) histone like domain AY555_RS08235 SM00422 helix_turn_helix, mercury resistance AY555_RS08245 SM00849 Metallo-beta-lactamase superfamily AY555_RS08270 SM00091 PAS domain AY555_RS08270 SM00448 cheY-homologous receiver domain AY555_RS08290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AY555_RS08290 SM00387 Histidine kinase-like ATPases AY555_RS08290 SM00388 His Kinase A (phosphoacceptor) domain AY555_RS08295 SM00382 ATPases associated with a variety of cellular activities AY555_RS08295 SM00448 cheY-homologous receiver domain AY555_RS08340 SM01323 AY555_RS08340 AY555_RS08355 SM00881 CoA binding domain AY555_RS08455 SM00936 Penicillin-binding protein 5, C-terminal domain AY555_RS08480 SM00849 Metallo-beta-lactamase superfamily AY555_RS08520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AY555_RS08525 SM00836 DALR anticodon binding domain AY555_RS08525 SM01016 Arginyl tRNA synthetase N terminal dom AY555_RS08550 SM00267 diguanylate cyclase AY555_RS08590 SM00434 DNA Topoisomerase IV AY555_RS08605 SM00257 Lysin motif AY555_RS08640 SM00382 ATPases associated with a variety of cellular activities AY555_RS08655 SM00487 DEAD-like helicases superfamily AY555_RS08655 SM00490 helicase superfamily c-terminal domain AY555_RS08655 SM00982 AY555_RS08655 AY555_RS08655 SM01058 CarD-like/TRCF domain AY555_RS08665 SM00487 DEAD-like helicases superfamily AY555_RS08665 SM00490 helicase superfamily c-terminal domain AY555_RS08685 SM00849 Metallo-beta-lactamase superfamily AY555_RS08735 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AY555_RS08740 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AY555_RS08790 SM00116 Domain in cystathionine beta-synthase and other proteins. AY555_RS08805 SM01130 AY555_RS08805 AY555_RS08825 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AY555_RS08825 SM00954 Region found in RelA / SpoT proteins AY555_RS08830 SM01409 AY555_RS08830 AY555_RS08845 SM00986 Uracil DNA glycosylase superfamily AY555_RS08845 SM00987 UreE urease accessory protein, C-terminal domain AY555_RS08850 SM00411 bacterial (prokaryotic) histone like domain AY555_RS08855 SM00382 ATPases associated with a variety of cellular activities AY555_RS08855 SM00464 Found in ATP-dependent protease La (LON) AY555_RS08865 SM01192 AY555_RS08865 AY555_RS08865 SM01193 AY555_RS08865 AY555_RS08990 SM00052 Putative diguanylate phosphodiesterase AY555_RS08990 SM00267 diguanylate cyclase AY555_RS08990 SM00448 cheY-homologous receiver domain AY555_RS08995 SM00919 Malic enzyme, NAD binding domain AY555_RS08995 SM01274 AY555_RS08995 AY555_RS09000 SM00878 Biotin carboxylase C-terminal domain AY555_RS09020 SM00829 Enoylreductase AY555_RS09070 SM00487 DEAD-like helicases superfamily AY555_RS09070 SM00490 helicase superfamily c-terminal domain AY555_RS09115 SM00845 GatB domain AY555_RS09130 SM00732 Likely ribonuclease with RNase H fold. AY555_RS09145 SM01207 AY555_RS09145 AY555_RS09150 SM00870 AY555_RS09150 AY555_RS09160 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AY555_RS09160 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AY555_RS09160 SM00493 AY555_RS09160 AY555_RS09165 SM00316 Ribosomal protein S1-like RNA-binding domain AY555_RS09165 SM00955 AY555_RS09165 AY555_RS09170 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AY555_RS09170 SM00245 tail specific protease AY555_RS09180 SM00448 cheY-homologous receiver domain AY555_RS09200 SM00788 Adenylosuccinate synthetase AY555_RS09240 SM00878 Biotin carboxylase C-terminal domain AY555_RS09275 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS09305 SM00861 Transketolase, pyrimidine binding domain AY555_RS09310 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AY555_RS09310 SM00091 PAS domain AY555_RS09310 SM00267 diguanylate cyclase AY555_RS09320 SM00421 helix_turn_helix, Lux Regulon AY555_RS09320 SM00448 cheY-homologous receiver domain AY555_RS09325 SM00411 bacterial (prokaryotic) histone like domain AY555_RS09370 SM00382 ATPases associated with a variety of cellular activities AY555_RS09370 SM00448 cheY-homologous receiver domain AY555_RS09380 SM00382 ATPases associated with a variety of cellular activities AY555_RS09380 SM00962 SRP54-type protein, GTPase domain AY555_RS09395 SM00271 DnaJ molecular chaperone homology domain AY555_RS09395 SM00287 Bacterial SH3 domain homologues AY555_RS09425 SM00382 ATPases associated with a variety of cellular activities AY555_RS09430 SM00448 cheY-homologous receiver domain AY555_RS09430 SM00862 Transcriptional regulatory protein, C terminal AY555_RS09440 SM01060 AY555_RS09440 AY555_RS09515 SM00421 helix_turn_helix, Lux Regulon AY555_RS09520 SM00530 Helix-turn-helix XRE-family like proteins AY555_RS09535 SM00998 Adenylosuccinate lyase C-terminus AY555_RS09555 SM01211 AY555_RS09555 AY555_RS09575 SM00869 Autotransporter beta-domain AY555_RS09590 SM00138 Methyltransferase, chemotaxis proteins AY555_RS09595 SM00448 cheY-homologous receiver domain AY555_RS09600 SM00448 cheY-homologous receiver domain AY555_RS09605 SM00073 Histidine Phosphotransfer domain AY555_RS09605 SM00260 Two component signalling adaptor domain AY555_RS09605 SM00387 Histidine kinase-like ATPases AY555_RS09605 SM00448 cheY-homologous receiver domain AY555_RS09605 SM01231 AY555_RS09605 AY555_RS09615 SM00487 DEAD-like helicases superfamily AY555_RS09615 SM00490 helicase superfamily c-terminal domain AY555_RS09615 SM00847 Helicase associated domain (HA2) Add an annotation AY555_RS09645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS09650 SM00316 Ribosomal protein S1-like RNA-binding domain AY555_RS09650 SM00732 Likely ribonuclease with RNase H fold. AY555_RS09665 SM00382 ATPases associated with a variety of cellular activities AY555_RS09715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AY555_RS09760 SM00363 S4 RNA-binding domain AY555_RS09760 SM01390 AY555_RS09760 AY555_RS09805 SM00382 ATPases associated with a variety of cellular activities AY555_RS09815 SM00062 Bacterial periplasmic substrate-binding proteins AY555_RS09815 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AY555_RS09915 SM00729 Elongator protein 3, MiaB family, Radical SAM AY555_RS09935 SM00062 Bacterial periplasmic substrate-binding proteins