HD_RS00005 SM01228 HD_RS00005 HD_RS00050 SM00382 ATPases associated with a variety of cellular activities HD_RS00185 SM00729 Elongator protein 3, MiaB family, Radical SAM HD_RS00220 SM00563 Phosphate acyltransferases HD_RS00285 SM00852 Probable molybdopterin binding domain HD_RS00290 SM00938 Nitrogen regulatory protein P-II HD_RS00335 SM00926 Molybdopterin oxidoreductase Fe4S4 domain HD_RS00380 SM00530 Helix-turn-helix XRE-family like proteins HD_RS00470 SM00644 HD_RS00470 HD_RS00735 SM00271 DnaJ molecular chaperone homology domain HD_RS00835 SM00487 DEAD-like helicases superfamily HD_RS00835 SM00490 helicase superfamily c-terminal domain HD_RS00860 SM00382 ATPases associated with a variety of cellular activities HD_RS00860 SM00994 ClpX C4-type zinc finger HD_RS00860 SM01086 C-terminal, D2-small domain, of ClpB protein HD_RS00880 SM00479 HD_RS00880 HD_RS00885 SM00382 ATPases associated with a variety of cellular activities HD_RS00890 SM00729 Elongator protein 3, MiaB family, Radical SAM HD_RS00915 SM00382 ATPases associated with a variety of cellular activities HD_RS00925 SM00851 MGS-like domain HD_RS00925 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HD_RS00930 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain HD_RS01030 SM00382 ATPases associated with a variety of cellular activities HD_RS01035 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HD_RS01065 SM00836 DALR anticodon binding domain HD_RS01065 SM01016 Arginyl tRNA synthetase N terminal dom HD_RS01075 SM00967 RNA 2'-O ribose methyltransferase substrate binding HD_RS01080 SM00155 Phospholipase D. Active site motifs. HD_RS01090 SM00904 Riboflavin kinase HD_RS01105 SM00448 cheY-homologous receiver domain HD_RS01105 SM00862 Transcriptional regulatory protein, C terminal HD_RS01160 SM01126 HD_RS01160 HD_RS01170 SM00530 Helix-turn-helix XRE-family like proteins HD_RS01230 SM00421 helix_turn_helix, Lux Regulon HD_RS01230 SM00448 cheY-homologous receiver domain HD_RS01235 SM00981 HD_RS01235 HD_RS01285 SM00382 ATPases associated with a variety of cellular activities HD_RS01290 SM00382 ATPases associated with a variety of cellular activities HD_RS01295 SM00316 Ribosomal protein S1-like RNA-binding domain HD_RS01295 SM00732 Likely ribonuclease with RNase H fold. HD_RS01300 SM00028 Tetratricopeptide repeats HD_RS01350 SM00493 HD_RS01350 HD_RS01375 SM00450 Rhodanese Homology Domain HD_RS01480 SM00316 Ribosomal protein S1-like RNA-binding domain HD_RS01530 SM00870 HD_RS01530 HD_RS01575 SM00900 HD_RS01575 HD_RS01655 SM00900 HD_RS01655 HD_RS01695 SM00382 ATPases associated with a variety of cellular activities HD_RS01705 SM01022 HD_RS01705 HD_RS01820 SM00967 RNA 2'-O ribose methyltransferase substrate binding HD_RS01830 SM00861 Transketolase, pyrimidine binding domain HD_RS01855 SM00855 Phosphoglycerate mutase family HD_RS01870 SM00257 Lysin motif HD_RS01870 SM00646 HD_RS01870 HD_RS01880 SM00479 HD_RS01880 HD_RS01935 SM00363 S4 RNA-binding domain HD_RS01960 SM00341 Helicase and RNase D C-terminal HD_RS01960 SM00487 DEAD-like helicases superfamily HD_RS01960 SM00490 helicase superfamily c-terminal domain HD_RS01960 SM00956 HD_RS01960 HD_RS01965 SM01192 HD_RS01965 HD_RS01965 SM01193 HD_RS01965 HD_RS01975 SM00530 Helix-turn-helix XRE-family like proteins HD_RS02070 SM00644 HD_RS02070 HD_RS02070 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. HD_RS02220 SM00927 DNA mismatch repair enzyme MutH HD_RS02230 SM00563 Phosphate acyltransferases HD_RS02240 SM00481 DNA polymerase alpha chain like domain HD_RS02290 SM00382 ATPases associated with a variety of cellular activities HD_RS02290 SM01086 C-terminal, D2-small domain, of ClpB protein HD_RS02320 SM00382 ATPases associated with a variety of cellular activities HD_RS02335 SM00937 HD_RS02335 HD_RS02375 SM00382 ATPases associated with a variety of cellular activities HD_RS02475 SM00479 HD_RS02475 HD_RS02480 SM00825 Beta-ketoacyl synthase HD_RS02510 SM00028 Tetratricopeptide repeats HD_RS02525 SM00487 DEAD-like helicases superfamily HD_RS02525 SM00490 helicase superfamily c-terminal domain HD_RS02530 SM01005 Alanine racemase, C-terminal domain HD_RS02535 SM00382 ATPases associated with a variety of cellular activities HD_RS02585 SM00878 Biotin carboxylase C-terminal domain HD_RS02635 SM00363 S4 RNA-binding domain HD_RS02690 SM00838 Elongation factor G C-terminus HD_RS02690 SM00889 Elongation factor G, domain IV HD_RS02700 SM00971 Serine acetyltransferase, N-terminal HD_RS02715 SM00450 Rhodanese Homology Domain HD_RS02725 SM00257 Lysin motif HD_RS02815 SM00400 zinc finger HD_RS02815 SM00493 HD_RS02815 HD_RS02815 SM00766 DNA primase DnaG DnaB-binding HD_RS02825 SM00363 S4 RNA-binding domain HD_RS02830 SM00316 Ribosomal protein S1-like RNA-binding domain HD_RS02830 SM00357 Cold shock protein domain HD_RS02830 SM00955 HD_RS02830 HD_RS02875 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. HD_RS02890 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain HD_RS02890 SM01232 HD_RS02890 HD_RS02995 SM00100 Cyclic nucleotide-monophosphate binding domain HD_RS02995 SM00419 helix_turn_helix, cAMP Regulatory protein HD_RS03015 SM00853 MutL C terminal dimerisation domain HD_RS03015 SM01340 HD_RS03015 HD_RS03050 SM01230 HD_RS03050 HD_RS03055 SM01234 HD_RS03055 HD_RS03070 SM00257 Lysin motif HD_RS03075 SM00257 Lysin motif HD_RS03125 SM01091 Transporter associated domain HD_RS03165 SM01152 HD_RS03165 HD_RS03280 SM00062 Bacterial periplasmic substrate-binding proteins HD_RS03285 SM00749 bacterial OsmY and nodulation domain HD_RS03330 SM00382 ATPases associated with a variety of cellular activities HD_RS03335 SM00062 Bacterial periplasmic substrate-binding proteins HD_RS03360 SM00864 Tubulin/FtsZ family, GTPase domain HD_RS03360 SM00865 Tubulin/FtsZ family, C-terminal domain HD_RS03365 SM00842 Cell division protein FtsA HD_RS03405 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HD_RS03405 SM00292 breast cancer carboxy-terminal domain HD_RS03405 SM00532 Ligase N family HD_RS03410 SM00771 ZipA, C-terminal domain (FtsZ-binding) HD_RS03420 SM01350 HD_RS03420 HD_RS03450 SM00363 S4 RNA-binding domain HD_RS03470 SM00859 Semialdehyde dehydrogenase, NAD binding domain HD_RS03485 SM00480 DNA polymerase III beta subunit HD_RS03490 SM00382 ATPases associated with a variety of cellular activities HD_RS03490 SM00760 Bacterial dnaA protein helix-turn-helix domain HD_RS03500 SM00937 HD_RS03500 HD_RS03525 SM00382 ATPases associated with a variety of cellular activities HD_RS03535 SM00382 ATPases associated with a variety of cellular activities HD_RS03560 SM00387 Histidine kinase-like ATPases HD_RS03560 SM00433 TopoisomeraseII HD_RS03565 SM00830 Chorismate mutase type II HD_RS03575 SM00731 SprT homologues. HD_RS03635 SM01133 HD_RS03635 HD_RS03645 SM00859 Semialdehyde dehydrogenase, NAD binding domain HD_RS03660 SM00357 Cold shock protein domain HD_RS03660 SM00382 ATPases associated with a variety of cellular activities HD_RS03660 SM00959 Rho termination factor, N-terminal domain HD_RS03725 SM00857 Resolvase, N terminal domain HD_RS03790 SM00047 Lysozyme subfamily 2 HD_RS03905 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain HD_RS03905 SM00437 Bacterial DNA topoisomerase I DNA-binding domain HD_RS03905 SM00493 HD_RS03905 HD_RS04010 SM00487 DEAD-like helicases superfamily HD_RS04010 SM00490 helicase superfamily c-terminal domain HD_RS04010 SM00982 HD_RS04010 HD_RS04010 SM01058 CarD-like/TRCF domain HD_RS04020 SM01207 HD_RS04020 HD_RS04025 SM00905 Dihydroneopterin aldolase HD_RS04040 SM00382 ATPases associated with a variety of cellular activities HD_RS04045 SM00382 ATPases associated with a variety of cellular activities HD_RS04045 SM00962 SRP54-type protein, GTPase domain HD_RS04045 SM00963 SRP54-type protein, helical bundle domain HD_RS04060 SM00903 Flavin reductase like domain HD_RS04135 SM00411 bacterial (prokaryotic) histone like domain HD_RS04150 SM00729 Elongator protein 3, MiaB family, Radical SAM HD_RS04150 SM00876 Biotin and Thiamin Synthesis associated domain HD_RS04155 SM00357 Cold shock protein domain HD_RS04160 SM00945 ProQ/FINO family HD_RS04165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HD_RS04165 SM00245 tail specific protease HD_RS04200 SM00382 ATPases associated with a variety of cellular activities HD_RS04205 SM00849 Metallo-beta-lactamase superfamily HD_RS04280 SM00530 Helix-turn-helix XRE-family like proteins HD_RS04345 SM00363 S4 RNA-binding domain HD_RS04350 SM00562 HD_RS04350 HD_RS04360 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain HD_RS04365 SM00363 S4 RNA-binding domain HD_RS04380 SM00518 AP endonuclease family 2 HD_RS04395 SM00986 Uracil DNA glycosylase superfamily HD_RS04395 SM00987 UreE urease accessory protein, C-terminal domain HD_RS04460 SM00271 DnaJ molecular chaperone homology domain HD_RS04500 SM00840 HD_RS04500 HD_RS04515 SM00530 Helix-turn-helix XRE-family like proteins HD_RS04520 SM00382 ATPases associated with a variety of cellular activities HD_RS04520 SM00930 HD_RS04520 HD_RS04560 SM01130 HD_RS04560 HD_RS04600 SM00478 endonuclease III HD_RS04600 SM00525 HD_RS04600 HD_RS04620 SM00382 ATPases associated with a variety of cellular activities HD_RS04715 SM00116 Domain in cystathionine beta-synthase and other proteins. HD_RS04715 SM01091 Transporter associated domain HD_RS04730 SM00382 ATPases associated with a variety of cellular activities HD_RS04730 SM00464 Found in ATP-dependent protease La (LON) HD_RS04750 SM00912 haemagglutination activity domain HD_RS04795 SM00116 Domain in cystathionine beta-synthase and other proteins. HD_RS04840 SM00650 Ribosomal RNA adenine dimethylases HD_RS04865 SM00954 Region found in RelA / SpoT proteins HD_RS04890 SM00935 Outer membrane protein (OmpH-like) HD_RS04900 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HD_RS04915 SM00849 Metallo-beta-lactamase superfamily HD_RS04920 SM00014 Acid phosphatase homologues HD_RS04925 SM01103 HD_RS04925 HD_RS05035 SM00382 ATPases associated with a variety of cellular activities HD_RS05055 SM00382 ATPases associated with a variety of cellular activities HD_RS05060 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs HD_RS05060 SM00474 3'-5' exonuclease HD_RS05060 SM00475 5'-3' exonuclease HD_RS05060 SM00482 DNA polymerase A domain HD_RS05080 SM00764 Citrate lyase ligase C-terminal domain HD_RS05110 SM00919 Malic enzyme, NAD binding domain HD_RS05110 SM01274 HD_RS05110 HD_RS05135 SM00849 Metallo-beta-lactamase superfamily HD_RS05165 SM00357 Cold shock protein domain HD_RS05165 SM00955 HD_RS05165 HD_RS05210 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain HD_RS05210 SM00437 Bacterial DNA topoisomerase I DNA-binding domain HD_RS05210 SM00493 HD_RS05210 HD_RS05225 SM00869 Autotransporter beta-domain HD_RS05250 SM00487 DEAD-like helicases superfamily HD_RS05250 SM00491 HD_RS05250 HD_RS05270 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HD_RS05290 SM00382 ATPases associated with a variety of cellular activities HD_RS05420 SM00912 haemagglutination activity domain HD_RS05460 SM00861 Transketolase, pyrimidine binding domain HD_RS05465 SM00382 ATPases associated with a variety of cellular activities HD_RS05505 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HD_RS05515 SM00316 Ribosomal protein S1-like RNA-binding domain HD_RS05520 SM00411 bacterial (prokaryotic) histone like domain HD_RS05530 SM00028 Tetratricopeptide repeats HD_RS05535 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family HD_RS05570 SM00947 Carbonic anhydrase HD_RS05575 SM00357 Cold shock protein domain HD_RS05590 SM00287 Bacterial SH3 domain homologues HD_RS05660 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain HD_RS05660 SM00437 Bacterial DNA topoisomerase I DNA-binding domain HD_RS05660 SM00493 HD_RS05660 HD_RS05690 SM00729 Elongator protein 3, MiaB family, Radical SAM HD_RS05735 SM00841 Elongation factor P, C-terminal HD_RS05735 SM01185 HD_RS05735 HD_RS05765 SM00481 DNA polymerase alpha chain like domain HD_RS05770 SM00487 DEAD-like helicases superfamily HD_RS05770 SM00490 helicase superfamily c-terminal domain HD_RS05780 SM01011 Aminopeptidase P, N-terminal domain HD_RS05795 SM01001 AIR carboxylase HD_RS05810 SM00100 Cyclic nucleotide-monophosphate binding domain HD_RS05810 SM00419 helix_turn_helix, cAMP Regulatory protein HD_RS05820 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain HD_RS05975 SM00316 Ribosomal protein S1-like RNA-binding domain HD_RS06005 SM00448 cheY-homologous receiver domain HD_RS06005 SM00862 Transcriptional regulatory protein, C terminal HD_RS06010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HD_RS06010 SM00387 Histidine kinase-like ATPases HD_RS06010 SM00388 His Kinase A (phosphoacceptor) domain HD_RS06040 SM00843 HD_RS06040 HD_RS06045 SM00344 helix_turn_helix ASNC type HD_RS06050 SM00341 Helicase and RNase D C-terminal HD_RS06050 SM00474 3'-5' exonuclease HD_RS06070 SM00411 bacterial (prokaryotic) histone like domain HD_RS06075 SM00873 B3/4 domain HD_RS06075 SM00874 tRNA synthetase B5 domain HD_RS06075 SM00896 Ferredoxin-fold anticodon binding domain HD_RS06135 SM00382 ATPases associated with a variety of cellular activities HD_RS06145 SM00116 Domain in cystathionine beta-synthase and other proteins. HD_RS06145 SM01240 HD_RS06145 HD_RS06155 SM00912 haemagglutination activity domain HD_RS06230 SM00382 ATPases associated with a variety of cellular activities HD_RS06450 SM00434 DNA Topoisomerase IV HD_RS06455 SM00316 Ribosomal protein S1-like RNA-binding domain HD_RS06455 SM00322 K homology RNA-binding domain HD_RS06460 SM00028 Tetratricopeptide repeats HD_RS06465 SM00487 DEAD-like helicases superfamily HD_RS06465 SM00490 helicase superfamily c-terminal domain HD_RS06515 SM00382 ATPases associated with a variety of cellular activities HD_RS06535 SM00358 Double-stranded RNA binding motif HD_RS06535 SM00535 Ribonuclease III family HD_RS06560 SM01126 HD_RS06560 HD_RS06565 SM00530 Helix-turn-helix XRE-family like proteins HD_RS06580 SM01126 HD_RS06580 HD_RS06640 SM01400 HD_RS06640 HD_RS06655 SM00382 ATPases associated with a variety of cellular activities HD_RS06660 SM00316 Ribosomal protein S1-like RNA-binding domain HD_RS06675 SM00925 MltA specific insert domain HD_RS06705 SM00354 helix_turn _helix lactose operon repressor HD_RS06715 SM00387 Histidine kinase-like ATPases HD_RS06715 SM00433 TopoisomeraseII HD_RS06730 SM00420 helix_turn_helix, Deoxyribose operon repressor HD_RS06730 SM01134 HD_RS06730 HD_RS06745 SM00382 ATPases associated with a variety of cellular activities HD_RS06750 SM00382 ATPases associated with a variety of cellular activities HD_RS06775 SM00855 Phosphoglycerate mutase family HD_RS06795 SM01002 Alanine dehydrogenase/PNT, C-terminal domain HD_RS06795 SM01003 Alanine dehydrogenase/PNT, N-terminal domain HD_RS06820 SM00729 Elongator protein 3, MiaB family, Radical SAM HD_RS06835 SM00382 ATPases associated with a variety of cellular activities HD_RS06840 SM00382 ATPases associated with a variety of cellular activities HD_RS06855 SM00463 Small MutS-related domain HD_RS06895 SM01126 HD_RS06895 HD_RS06900 SM00487 DEAD-like helicases superfamily HD_RS06915 SM00530 Helix-turn-helix XRE-family like proteins HD_RS07035 SM00861 Transketolase, pyrimidine binding domain HD_RS07045 SM00345 helix_turn_helix gluconate operon transcriptional repressor HD_RS07090 SM01387 HD_RS07090 HD_RS07115 SM00382 ATPases associated with a variety of cellular activities HD_RS07120 SM00434 DNA Topoisomerase IV HD_RS07135 SM01323 HD_RS07135 HD_RS07165 SM00382 ATPases associated with a variety of cellular activities HD_RS07170 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HD_RS07185 SM00644 HD_RS07185 HD_RS07195 SM00487 DEAD-like helicases superfamily HD_RS07195 SM00490 helicase superfamily c-terminal domain HD_RS07210 SM00852 Probable molybdopterin binding domain HD_RS07215 SM00382 ATPases associated with a variety of cellular activities HD_RS07230 SM00271 DnaJ molecular chaperone homology domain HD_RS07290 SM00883 Chaperonin 10 Kd subunit HD_RS07300 SM00957 SecA DEAD-like domain HD_RS07300 SM00958 SecA preprotein cross-linking domain HD_RS07340 SM00732 Likely ribonuclease with RNase H fold. HD_RS07345 SM01091 Transporter associated domain HD_RS07370 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain HD_RS07385 SM00981 HD_RS07385 HD_RS07390 SM00788 Adenylosuccinate synthetase HD_RS07395 SM00244 prohibitin homologues HD_RS07400 SM00244 prohibitin homologues HD_RS07415 SM00465 GIY-YIG type nucleases (URI domain) HD_RS07440 SM00382 ATPases associated with a variety of cellular activities HD_RS07450 SM00382 ATPases associated with a variety of cellular activities HD_RS07455 SM00382 ATPases associated with a variety of cellular activities HD_RS07475 SM00382 ATPases associated with a variety of cellular activities HD_RS07495 SM00072 Guanylate kinase homologues. HD_RS07575 SM00984 UDP binding domain HD_RS07625 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family HD_RS07645 SM00420 helix_turn_helix, Deoxyribose operon repressor HD_RS07645 SM01134 HD_RS07645 HD_RS07655 SM01007 Class II Aldolase and Adducin N-terminal domain HD_RS07680 SM00663 RNA polymerase I subunit A N-terminus HD_RS07705 SM00649 Ribosomal protein L11/L12 HD_RS07710 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. HD_RS07710 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. HD_RS07765 SM00729 Elongator protein 3, MiaB family, Radical SAM HD_RS07835 SM00344 helix_turn_helix ASNC type HD_RS07875 SM00487 DEAD-like helicases superfamily HD_RS07875 SM00490 helicase superfamily c-terminal domain HD_RS07880 SM01409 HD_RS07880 HD_RS07885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HD_RS07885 SM00954 Region found in RelA / SpoT proteins HD_RS07910 SM00823 Phosphopantetheine attachment site HD_RS07965 SM00836 DALR anticodon binding domain HD_RS07975 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. HD_RS08005 SM00662 RNA polymerases D HD_RS08010 SM00363 S4 RNA-binding domain HD_RS08010 SM01390 HD_RS08010 HD_RS08075 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. HD_RS08080 SM01374 HD_RS08080 HD_RS08105 SM00322 K homology RNA-binding domain HD_RS08120 SM01382 HD_RS08120 HD_RS08120 SM01383 HD_RS08120 HD_RS08140 SM01403 HD_RS08140 HD_RS08195 SM00382 ATPases associated with a variety of cellular activities HD_RS08195 SM00962 SRP54-type protein, GTPase domain HD_RS08195 SM00963 SRP54-type protein, helical bundle domain HD_RS08225 SM00478 endonuclease III HD_RS08235 SM00382 ATPases associated with a variety of cellular activities HD_RS08235 SM01086 C-terminal, D2-small domain, of ClpB protein HD_RS08250 SM00729 Elongator protein 3, MiaB family, Radical SAM HD_RS08265 SM00936 Penicillin-binding protein 5, C-terminal domain HD_RS08295 SM00533 DNA-binding domain of DNA mismatch repair MUTS family HD_RS08295 SM00534 ATPase domain of DNA mismatch repair MUTS family HD_RS08325 SM00382 ATPases associated with a variety of cellular activities HD_RS08335 SM00062 Bacterial periplasmic substrate-binding proteins