HI0001 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HI0014 SM00358 Double-stranded RNA binding motif HI0014 SM00535 Ribonuclease III family HI0018 SM00986 Uracil DNA glycosylase superfamily HI0018 SM00987 UreE urease accessory protein, C-terminal domain HI0019 SM00729 Elongator protein 3, MiaB family, Radical SAM HI0025 SM00764 Citrate lyase ligase C-terminal domain HI0026 SM00729 Elongator protein 3, MiaB family, Radical SAM HI0029 SM00936 Penicillin-binding protein 5, C-terminal domain HI0036 SM00382 ATPases associated with a variety of cellular activities HI0054 SM00345 helix_turn_helix gluconate operon transcriptional repressor HI0054 SM00895 HI0054 HI0057 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HI0057 SM00465 GIY-YIG type nucleases (URI domain) HI0060 SM00382 ATPases associated with a variety of cellular activities HI0061 SM00849 Metallo-beta-lactamase superfamily HI0066 SM00257 Lysin motif HI0066 SM00646 HI0066 HI0067 SM00853 MutL C terminal dimerisation domain HI0067 SM01340 HI0067 HI0078 SM00840 HI0078 HI0099 SM00382 ATPases associated with a variety of cellular activities HI0104 SM00387 Histidine kinase-like ATPases HI0106 SM00382 ATPases associated with a variety of cellular activities HI0106 SM00962 SRP54-type protein, GTPase domain HI0106 SM00963 SRP54-type protein, helical bundle domain HI0107 SM01091 Transporter associated domain HI0117 SM00925 MltA specific insert domain HI0126 SM00382 ATPases associated with a variety of cellular activities HI0136 SM00382 ATPases associated with a variety of cellular activities HI0137 SM00479 HI0137 HI0142 SM01130 HI0142 HI0150 SM00244 prohibitin homologues HI0151 SM00244 prohibitin homologues HI0155 SM00822 HI0155 HI0156 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. HI0167 SM00900 HI0167 HI0176 SM00363 S4 RNA-binding domain HI0185 SM00829 Enoylreductase HI0186 SM00422 helix_turn_helix, mercury resistance HI0189 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HI0211 SM00014 Acid phosphatase homologues HI0217 SM01321 HI0217 HI0219a SM00073 Histidine Phosphotransfer domain HI0219a SM00448 cheY-homologous receiver domain HI0220.2 SM00986 Uracil DNA glycosylase superfamily HI0220.2 SM00987 UreE urease accessory protein, C-terminal domain HI0221 SM00116 Domain in cystathionine beta-synthase and other proteins. HI0221 SM01240 HI0221 HI0221.1 SM01240 HI0221.1 HI0224 SM00344 helix_turn_helix ASNC type HI0229 SM00316 Ribosomal protein S1-like RNA-binding domain HI0229 SM00322 K homology RNA-binding domain HI0230 SM00028 Tetratricopeptide repeats HI0231 SM00487 DEAD-like helicases superfamily HI0231 SM00490 helicase superfamily c-terminal domain HI0232 SM00062 Bacterial periplasmic substrate-binding proteins HI0241 SM01323 HI0241 HI0255 SM01130 HI0255 HI0264 SM00912 haemagglutination activity domain HI0265 SM00905 Dihydroneopterin aldolase HI0266 SM01207 HI0266 HI0267 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HI0267 SM00387 Histidine kinase-like ATPases HI0271 SM00271 DnaJ molecular chaperone homology domain HI0293 SM00422 helix_turn_helix, mercury resistance HI0295 SM00357 Cold shock protein domain HI0295 SM00382 ATPases associated with a variety of cellular activities HI0295 SM00959 Rho termination factor, N-terminal domain HI0298 SM00382 ATPases associated with a variety of cellular activities HI0300 SM00644 HI0300 HI0301 SM00116 Domain in cystathionine beta-synthase and other proteins. HI0301 SM01091 Transporter associated domain HI0305 SM00732 Likely ribonuclease with RNase H fold. HI0312 SM00382 ATPases associated with a variety of cellular activities HI0313 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HI0321 SM00966 SpoVT / AbrB like domain HI0324 SM00479 HI0324 HI0328 SM00841 Elongation factor P, C-terminal HI0328 SM01185 HI0328 HI0334 SM00954 Region found in RelA / SpoT proteins HI0336 SM00852 Probable molybdopterin binding domain HI0337 SM00938 Nitrogen regulatory protein P-II HI0339 SM00487 DEAD-like helicases superfamily HI0339 SM00490 helicase superfamily c-terminal domain HI0354 SM00382 ATPases associated with a variety of cellular activities HI0361 SM00382 ATPases associated with a variety of cellular activities HI0366 SM00028 Tetratricopeptide repeats HI0375 SM00271 DnaJ molecular chaperone homology domain HI0387 SM00487 DEAD-like helicases superfamily HI0387 SM00491 HI0387 HI0390 SM00341 Helicase and RNase D C-terminal HI0390 SM00474 3'-5' exonuclease HI0396 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. HI0403 SM00927 DNA mismatch repair enzyme MutH HI0404 SM00977 TilS substrate C-terminal domain HI0408 SM00382 ATPases associated with a variety of cellular activities HI0410 SM00382 ATPases associated with a variety of cellular activities HI0412 SM00363 S4 RNA-binding domain HI0413 SM00316 Ribosomal protein S1-like RNA-binding domain HI0422 SM00487 DEAD-like helicases superfamily HI0422 SM00490 helicase superfamily c-terminal domain HI0424 SM00967 RNA 2'-O ribose methyltransferase substrate binding HI0425 SM00155 Phospholipase D. Active site motifs. HI0426 SM00345 helix_turn_helix gluconate operon transcriptional repressor HI0430 SM00411 bacterial (prokaryotic) histone like domain HI0443 SM00493 HI0443 HI0444 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain HI0444 SM00437 Bacterial DNA topoisomerase I DNA-binding domain HI0444 SM00493 HI0444 HI0452 SM01091 Transporter associated domain HI0462 SM00382 ATPases associated with a variety of cellular activities HI0462 SM00464 Found in ATP-dependent protease La (LON) HI0463 SM00729 Elongator protein 3, MiaB family, Radical SAM HI0479 SM00382 ATPases associated with a variety of cellular activities HI0497 SM00382 ATPases associated with a variety of cellular activities HI0497 SM01086 C-terminal, D2-small domain, of ClpB protein HI0502 SM00382 ATPases associated with a variety of cellular activities HI0506 SM00354 helix_turn _helix lactose operon repressor HI0514 SM00663 RNA polymerase I subunit A N-terminus HI0517 SM00649 Ribosomal protein L11/L12 HI0532 SM00400 zinc finger HI0532 SM00493 HI0532 HI0532 SM00766 DNA primase DnaG DnaB-binding HI0538 SM00988 UreE urease accessory protein, N-terminal domain HI0542 SM00883 Chaperonin 10 Kd subunit HI0548 SM00316 Ribosomal protein S1-like RNA-binding domain HI0549 SM00650 Ribosomal RNA adenine dimethylases HI0553 SM01350 HI0553 HI0554 SM01321 HI0554 HI0562 SM00363 S4 RNA-binding domain HI0563 SM00344 helix_turn_helix ASNC type HI0567 SM00387 Histidine kinase-like ATPases HI0567 SM00433 TopoisomeraseII HI0568 SM00316 Ribosomal protein S1-like RNA-binding domain HI0568 SM00732 Likely ribonuclease with RNase H fold. HI0579 SM00838 Elongation factor G C-terminus HI0579 SM00889 Elongation factor G, domain IV HI0582 SM01228 HI0582 HI0600 SM00382 ATPases associated with a variety of cellular activities HI0606 SM00971 Serine acetyltransferase, N-terminal HI0611 SM01007 Class II Aldolase and Adducin N-terminal domain HI0615 SM00420 helix_turn_helix, Deoxyribose operon repressor HI0615 SM01134 HI0615 HI0616 SM00487 DEAD-like helicases superfamily HI0616 SM00490 helicase superfamily c-terminal domain HI0619 SM00420 helix_turn_helix, Deoxyribose operon repressor HI0619 SM01134 HI0619 HI0621 SM00382 ATPases associated with a variety of cellular activities HI0621 SM00930 HI0621 HI0646 SM00859 Semialdehyde dehydrogenase, NAD binding domain HI0658 SM00382 ATPases associated with a variety of cellular activities HI0659 SM00530 Helix-turn-helix XRE-family like proteins HI0663m SM00382 ATPases associated with a variety of cellular activities HI0664 SM00382 ATPases associated with a variety of cellular activities HI0666.1 SM00530 Helix-turn-helix XRE-family like proteins HI0679 SM00450 Rhodanese Homology Domain HI0706 SM00257 Lysin motif HI0707 SM00533 DNA-binding domain of DNA mismatch repair MUTS family HI0707 SM00534 ATPase domain of DNA mismatch repair MUTS family HI0715 SM00382 ATPases associated with a variety of cellular activities HI0715 SM00994 ClpX C4-type zinc finger HI0715 SM01086 C-terminal, D2-small domain, of ClpB protein HI0717 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. HI0717 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. HI0726 SM00421 helix_turn_helix, Lux Regulon HI0726 SM00448 cheY-homologous receiver domain HI0727.1 SM01219 HI0727.1 HI0728 SM00341 Helicase and RNase D C-terminal HI0728 SM00487 DEAD-like helicases superfamily HI0728 SM00490 helicase superfamily c-terminal domain HI0728 SM00956 HI0728 HI0734 SM00563 Phosphate acyltransferases HI0739 SM00481 DNA polymerase alpha chain like domain HI0744 SM00450 Rhodanese Homology Domain HI0745 SM00870 HI0745 HI0748 SM00563 Phosphate acyltransferases HI0752 SM01211 HI0752 HI0757 SM00855 Phosphoglycerate mutase family HI0759 SM00478 endonuclease III HI0759 SM00525 HI0759 HI0768 SM00382 ATPases associated with a variety of cellular activities HI0768 SM00962 SRP54-type protein, GTPase domain HI0768 SM00963 SRP54-type protein, helical bundle domain HI0769 SM00382 ATPases associated with a variety of cellular activities HI0773 SM00882 Coenzyme A transferase HI0774 SM00882 Coenzyme A transferase HI0776 SM01403 HI0776 HI0780 SM01382 HI0780 HI0780 SM01383 HI0780 HI0783 SM00322 K homology RNA-binding domain HI0788 SM01374 HI0788 HI0789 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. HI0801 SM00363 S4 RNA-binding domain HI0801 SM01390 HI0801 HI0802 SM00662 RNA polymerases D HI0814 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain HI0816 SM01011 Aminopeptidase P, N-terminal domain HI0821 SM00354 helix_turn _helix lactose operon repressor HI0823 SM00382 ATPases associated with a variety of cellular activities HI0837 SM00448 cheY-homologous receiver domain HI0837 SM00862 Transcriptional regulatory protein, C terminal HI0856 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs HI0856 SM00474 3'-5' exonuclease HI0856 SM00475 5'-3' exonuclease HI0856 SM00482 DNA polymerase A domain HI0859 SM00382 ATPases associated with a variety of cellular activities HI0859 SM01086 C-terminal, D2-small domain, of ClpB protein HI0860 SM00967 RNA 2'-O ribose methyltransferase substrate binding HI0861 SM00316 Ribosomal protein S1-like RNA-binding domain HI0861 SM00357 Cold shock protein domain HI0861 SM00955 HI0861 HI0865 SM01230 HI0865 HI0876 SM00562 HI0876 HI0884 SM00448 cheY-homologous receiver domain HI0884 SM00862 Transcriptional regulatory protein, C terminal HI0887 SM00798 AICARFT/IMPCHase bienzyme HI0887 SM00851 MGS-like domain HI0888 SM01209 HI0888 HI0888 SM01210 HI0888 HI0892 SM00487 DEAD-like helicases superfamily HI0892 SM00490 helicase superfamily c-terminal domain HI0900 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase HI0909 SM00957 SecA DEAD-like domain HI0909 SM00958 SecA preprotein cross-linking domain HI0916 SM00935 Outer membrane protein (OmpH-like) HI0918 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HI0924 SM00836 DALR anticodon binding domain HI0928 SM01060 HI0928 HI0932 SM01192 HI0932 HI0932 SM01193 HI0932 HI0934 SM00028 Tetratricopeptide repeats HI0945 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HI0946 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain HI0946 SM01232 HI0946 HI0947 SM00670 Large family of predicted nucleotide-binding domains HI0957 SM00100 Cyclic nucleotide-monophosphate binding domain HI0957 SM00419 helix_turn_helix, cAMP Regulatory protein HI0963 SM00904 Riboflavin kinase HI0969 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain HI0972 SM00878 Biotin carboxylase C-terminal domain HI0986 SM00917 LeuA allosteric (dimerisation) domain HI0987 SM01329 HI0987 HI0990 SM00869 Autotransporter beta-domain HI0992 SM00480 DNA polymerase III beta subunit HI0993 SM00382 ATPases associated with a variety of cellular activities HI0993 SM00760 Bacterial dnaA protein helix-turn-helix domain HI1000 SM01234 HI1000 HI1009 SM00420 helix_turn_helix, Deoxyribose operon repressor HI1009 SM01134 HI1009 HI1012 SM01007 Class II Aldolase and Adducin N-terminal domain HI1021 SM00382 ATPases associated with a variety of cellular activities HI1022 SM00729 Elongator protein 3, MiaB family, Radical SAM HI1022 SM00876 Biotin and Thiamin Synthesis associated domain HI1023 SM00861 Transketolase, pyrimidine binding domain HI1024 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family HI1025 SM01007 Class II Aldolase and Adducin N-terminal domain HI1032 SM00346 helix_turn_helix isocitrate lyase regulation HI1047 SM00926 Molybdopterin oxidoreductase Fe4S4 domain HI1048 SM00460 Transglutaminase/protease-like homologues HI1051 SM00382 ATPases associated with a variety of cellular activities HI1052 SM00342 helix_turn_helix, arabinose operon control protein HI1070 SM00382 ATPases associated with a variety of cellular activities HI1070 SM00487 DEAD-like helicases superfamily HI1070 SM00490 helicase superfamily c-terminal domain HI1070 SM00847 Helicase associated domain (HA2) Add an annotation HI1078 SM00382 ATPases associated with a variety of cellular activities HI1080 SM00062 Bacterial periplasmic substrate-binding proteins HI1087 SM00382 ATPases associated with a variety of cellular activities HI1089 SM00382 ATPases associated with a variety of cellular activities HI1100 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HI1100 SM00292 breast cancer carboxy-terminal domain HI1100 SM00532 Ligase N family HI1101 SM00771 ZipA, C-terminal domain (FtsZ-binding) HI1106 SM00342 helix_turn_helix, arabinose operon control protein HI1110 SM00382 ATPases associated with a variety of cellular activities HI1116 SM01133 HI1116 HI1117 SM00382 ATPases associated with a variety of cellular activities HI1120 SM00382 ATPases associated with a variety of cellular activities HI1121 SM00382 ATPases associated with a variety of cellular activities HI1142 SM00842 Cell division protein FtsA HI1143 SM00864 Tubulin/FtsZ family, GTPase domain HI1143 SM00865 Tubulin/FtsZ family, C-terminal domain HI1145 SM00830 Chorismate mutase type II HI1148 SM00382 ATPases associated with a variety of cellular activities HI1156 SM00382 ATPases associated with a variety of cellular activities HI1157 SM00382 ATPases associated with a variety of cellular activities HI1173 SM00731 SprT homologues. HI1179 SM00062 Bacterial periplasmic substrate-binding proteins HI1180 SM00382 ATPases associated with a variety of cellular activities HI1184 SM00382 ATPases associated with a variety of cellular activities HI1185 SM00382 ATPases associated with a variety of cellular activities HI1197 SM00881 CoA binding domain HI1199 SM00363 S4 RNA-binding domain HI1202 SM00463 Small MutS-related domain HI1212 SM00937 HI1212 HI1220 SM00316 Ribosomal protein S1-like RNA-binding domain HI1221 SM00411 bacterial (prokaryotic) histone like domain HI1223 SM00028 Tetratricopeptide repeats HI1224 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family HI1229 SM00382 ATPases associated with a variety of cellular activities HI1234 SM00851 MGS-like domain HI1238 SM00271 DnaJ molecular chaperone homology domain HI1243 SM00363 S4 RNA-binding domain HI1245 SM00919 Malic enzyme, NAD binding domain HI1245 SM01274 HI1245 HI1247 SM00487 DEAD-like helicases superfamily HI1247 SM00490 helicase superfamily c-terminal domain HI1251 SM00530 Helix-turn-helix XRE-family like proteins HI1252 SM00382 ATPases associated with a variety of cellular activities HI1258 SM00487 DEAD-like helicases superfamily HI1258 SM00490 helicase superfamily c-terminal domain HI1258 SM00982 HI1258 HI1258 SM01058 CarD-like/TRCF domain HI1259 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HI1264 SM00434 DNA Topoisomerase IV HI1272 SM00382 ATPases associated with a variety of cellular activities HI1274 SM00849 Metallo-beta-lactamase superfamily HI1283 SM00316 Ribosomal protein S1-like RNA-binding domain HI1283 SM00322 K homology RNA-binding domain HI1285 SM00487 DEAD-like helicases superfamily HI1290 SM00830 Chorismate mutase type II HI1296 SM00318 Staphylococcal nuclease homologues HI1300 SM00382 ATPases associated with a variety of cellular activities HI1301 SM00947 Carbonic anhydrase HI1312 SM00873 B3/4 domain HI1312 SM00874 tRNA synthetase B5 domain HI1312 SM00896 Ferredoxin-fold anticodon binding domain HI1313 SM00411 bacterial (prokaryotic) histone like domain HI1328 SM01387 HI1328 HI1333 SM01103 HI1333 HI1335 SM00382 ATPases associated with a variety of cellular activities HI1342 SM00382 ATPases associated with a variety of cellular activities HI1347 SM00382 ATPases associated with a variety of cellular activities HI1353 SM00316 Ribosomal protein S1-like RNA-binding domain HI1357 SM00642 Alpha-amylase domain HI1358 SM00642 Alpha-amylase domain HI1362 SM01002 Alanine dehydrogenase/PNT, C-terminal domain HI1362 SM01003 Alanine dehydrogenase/PNT, N-terminal domain HI1365 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain HI1365 SM00437 Bacterial DNA topoisomerase I DNA-binding domain HI1365 SM00493 HI1365 HI1367 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain HI1378 SM00091 PAS domain HI1378 SM00387 Histidine kinase-like ATPases HI1378 SM00388 His Kinase A (phosphoacceptor) domain HI1379 SM00448 cheY-homologous receiver domain HI1379 SM00862 Transcriptional regulatory protein, C terminal HI1394 SM01022 HI1394 HI1400 SM00481 DNA polymerase alpha chain like domain HI1418 SM01040 BRO family, N-terminal domain HI1425 SM00100 Cyclic nucleotide-monophosphate binding domain HI1425 SM00419 helix_turn_helix, cAMP Regulatory protein HI1434.1 SM00357 Cold shock protein domain HI1439 SM00861 Transketolase, pyrimidine binding domain HI1448 SM00852 Probable molybdopterin binding domain HI1467 SM00382 ATPases associated with a variety of cellular activities HI1468 SM01387 HI1468 HI1470 SM00382 ATPases associated with a variety of cellular activities HI1474 SM00382 ATPases associated with a variety of cellular activities HI1476 SM00530 Helix-turn-helix XRE-family like proteins HI1481 SM00530 Helix-turn-helix XRE-family like proteins HI1528 SM00387 Histidine kinase-like ATPases HI1528 SM00433 TopoisomeraseII HI1529 SM00434 DNA Topoisomerase IV HI1533 SM00825 Beta-ketoacyl synthase HI1549 SM00382 ATPases associated with a variety of cellular activities HI1561 SM00937 HI1561 HI1574 SM00382 ATPases associated with a variety of cellular activities HI1575 SM01005 Alanine racemase, C-terminal domain HI1583 SM00836 DALR anticodon binding domain HI1583 SM01016 Arginyl tRNA synthetase N terminal dom HI1587 SM00528 Domain in histone-like proteins of HNS family HI1590 SM00382 ATPases associated with a variety of cellular activities HI1596 SM00344 helix_turn_helix ASNC type HI1597 SM00382 ATPases associated with a variety of cellular activities HI1598 SM01118 HI1598 HI1605 SM00287 Bacterial SH3 domain homologues HI1609 SM01400 HI1609 HI1610 SM00363 S4 RNA-binding domain HI1615 SM01001 AIR carboxylase HI1618 SM00382 ATPases associated with a variety of cellular activities HI1623 SM00422 helix_turn_helix, mercury resistance HI1625 SM00671 Sel1-like repeats. HI1633 SM00788 Adenylosuccinate synthetase HI1635 SM00354 helix_turn _helix lactose operon repressor HI1641 SM00382 ATPases associated with a variety of cellular activities HI1642 SM00382 ATPases associated with a variety of cellular activities HI1658 SM00749 bacterial OsmY and nodulation domain HI1662 SM00861 Transketolase, pyrimidine binding domain HI1663 SM00849 Metallo-beta-lactamase superfamily HI1668 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HI1668 SM00245 tail specific protease HI1670 SM00945 ProQ/FINO family HI1676 SM00729 Elongator protein 3, MiaB family, Radical SAM HI1678 SM00116 Domain in cystathionine beta-synthase and other proteins. HI1687 SM00900 HI1687 HI1689 SM00478 endonuclease III HI1689 SM00525 HI1689 HI1691 SM00382 ATPases associated with a variety of cellular activities HI1707 SM00387 Histidine kinase-like ATPases HI1707 SM00388 His Kinase A (phosphoacceptor) domain HI1708 SM00448 cheY-homologous receiver domain HI1708 SM00862 Transcriptional regulatory protein, C terminal HI1715 SM00479 HI1715 HI1719 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HI1730 SM00797 Allophanate hydrolase subunit 2 HI1731 SM00796 Allophanate hydrolase subunit 1 HI1733 SM00316 Ribosomal protein S1-like RNA-binding domain HI1733 SM00357 Cold shock protein domain HI1733 SM00955 HI1733 HI1740 SM00487 DEAD-like helicases superfamily HI1740 SM00490 helicase superfamily c-terminal domain HI1741 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HI1741 SM00954 Region found in RelA / SpoT proteins HI1742 SM01409 HI1742 HI1743 SM00072 Guanylate kinase homologues.