locus-tag	class	description
AT03_RS00015	COG0590	tRNA wobble adenosine to inosine editing
AT03_RS00030	COG0626	cystathionine gamma-synthase activity
AT03_RS00035	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
AT03_RS00050	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AT03_RS00055	COG1191	sigma factor activity
AT03_RS00080	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AT03_RS00085	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AT03_RS00090	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AT03_RS00135	COG4786	Flagellar basal body rod
AT03_RS00140	COG4786	Flagellar basal body rod
AT03_RS00150	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AT03_RS00155	COG1558	bacterial-type flagellum-dependent cell motility
AT03_RS00160	COG1815	bacterial-type flagellum-dependent cell motility
AT03_RS00180	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AT03_RS00195	COG1216	Glycosyl transferase, family 2
AT03_RS00195	COG0463	Glycosyl transferase, family 2
AT03_RS00210	COG0463	Glycosyl transferase, family 2
AT03_RS00240	COG1677	Flagellar hook-basal body complex protein FliE
AT03_RS00265	COG1987	bacterial-type flagellum assembly
AT03_RS00270	COG1684	flagellar biosynthetic protein fliR
AT03_RS00275	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AT03_RS00285	COG1070	Carbohydrate kinase
AT03_RS00295	COG0477	Major facilitator Superfamily
AT03_RS00295	COG2814	Major facilitator Superfamily
AT03_RS00300	COG1609	Transcriptional regulator
AT03_RS00300	COG2207	Transcriptional regulator
AT03_RS00310	COG3274	enterobacterial common antigen metabolic process
AT03_RS00315	COG2814	Major facilitator Superfamily
AT03_RS00320	COG0456	acetyltransferase
AT03_RS00325	COG1490	D-aminoacyl-tRNA deacylase activity
AT03_RS00330	COG1295	ribonuclease BN
AT03_RS00335	COG1011	Hydrolase
AT03_RS00340	COG0840	transmembrane signaling receptor activity
AT03_RS00360	COG2204	response regulator
AT03_RS00365	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AT03_RS00370	COG3642	lipopolysaccharide core region biosynthetic process
AT03_RS00385	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AT03_RS00390	COG2814	Major facilitator Superfamily
AT03_RS00395	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AT03_RS00400	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AT03_RS00410	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AT03_RS00415	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AT03_RS00415	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AT03_RS00420	COG0204	Acyl-transferase
AT03_RS00430	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AT03_RS00435	COG3084	Protein conserved in bacteria
AT03_RS00445	COG1763	Mo-molybdopterin cofactor biosynthetic process
AT03_RS00495	COG2186	Transcriptional regulator
AT03_RS00500	COG0477	Major facilitator Superfamily
AT03_RS00505	COG1609	Transcriptional regulator
AT03_RS00510	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AT03_RS00520	COG1172	Belongs to the binding-protein-dependent transport system permease family
AT03_RS00535	COG3158	transport of potassium into the cell
AT03_RS00555	COG1522	sequence-specific DNA binding
AT03_RS00560	COG0716	FMN binding
AT03_RS00565	COG0445	tRNA wobble uridine modification
AT03_RS00570	COG0357	Ribosomal RNA small subunit methyltransferase G
AT03_RS00575	COG3312	ion transport
AT03_RS00610	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AT03_RS00615	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AT03_RS00620	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AT03_RS00630	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AT03_RS00635	COG0573	inorganic phosphate transmembrane transporter activity
AT03_RS00640	COG0581	inorganic phosphate transmembrane transporter activity
AT03_RS00650	COG0704	Plays a role in the regulation of phosphate uptake
AT03_RS00655	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT03_RS00660	COG0765	amino acid transport
AT03_RS00665	COG0765	amino acid transport
AT03_RS00670	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AT03_RS00680	COG2252	PERMEase
AT03_RS00685	COG0431	NADPH-dependent FMN reductase
AT03_RS00695	COG0398	Pfam SNARE associated Golgi protein
AT03_RS00715	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AT03_RS00725	COG0592	DNA-directed DNA polymerase activity
AT03_RS00730	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AT03_RS00740	COG0561	phosphatase activity
AT03_RS00750	COG2186	Transcriptional regulator
AT03_RS00755	COG3734	2-keto-3-deoxy-galactonokinase
AT03_RS00760	COG0800	Aldolase
AT03_RS00765	COG4948	Mandelate Racemase Muconate Lactonizing
AT03_RS00770	COG2271	Major facilitator Superfamily
AT03_RS00775	COG2200	EAL domain
AT03_RS00775	COG2199	diguanylate cyclase activity
AT03_RS00780	COG0823	Involved in the tonB-independent uptake of proteins
AT03_RS00785	COG5645	(Lipo)protein
AT03_RS00790	COG0071	Belongs to the small heat shock protein (HSP20) family
AT03_RS00800	COG3977	Valine--pyruvate aminotransferase
AT03_RS00810	COG3722	fumarate hydratase activity
AT03_RS00815	COG0246	Mannitol dehydrogenase
AT03_RS00820	COG2213	PTS system mannitol-specific
AT03_RS00820	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS00825	COG3645	SOS response
AT03_RS00835	COG0751	glycine-tRNA ligase activity
AT03_RS00850	COG2818	Glycosylase
AT03_RS00855	COG0456	acetyltransferase
AT03_RS00860	COG2885	chlorophyll binding
AT03_RS00865	COG1609	Transcriptional regulator
AT03_RS00875	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AT03_RS00890	COG2982	Protein involved in outer membrane biogenesis
AT03_RS00895	COG2233	PERMEase
AT03_RS00900	COG0786	glutamate:sodium symporter activity
AT03_RS00905	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AT03_RS00910	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AT03_RS00915	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AT03_RS00930	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AT03_RS00935	COG2860	membrane
AT03_RS00940	COG0583	DNA-binding transcription factor activity
AT03_RS00945	COG2084	Dehydrogenase
AT03_RS00960	COG1561	YicC-like family, N-terminal region
AT03_RS00965	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AT03_RS01005	COG5301	cellulose 1,4-beta-cellobiosidase activity
AT03_RS01090	COG4695	Portal protein
AT03_RS01165	COG4974	Belongs to the 'phage' integrase family
AT03_RS01170	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AT03_RS01175	COG1309	transcriptional regulator
AT03_RS01180	COG0756	dUTP diphosphatase activity
AT03_RS01185	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AT03_RS01190	COG2003	Belongs to the UPF0758 family
AT03_RS01195	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AT03_RS01205	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AT03_RS01215	COG1519	Transferase
AT03_RS01220	COG0859	PFAM glycosyl transferase family 9
AT03_RS01225	COG0438	transferase activity, transferring glycosyl groups
AT03_RS01230	COG0515	serine threonine protein kinase
AT03_RS01235	COG1442	glycosyl transferase family 8
AT03_RS01240	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AT03_RS01250	COG0859	PFAM glycosyl transferase family 9
AT03_RS01260	COG0859	PFAM glycosyl transferase family 9
AT03_RS01265	COG0859	PFAM glycosyl transferase family 9
AT03_RS01285	COG2194	sulfuric ester hydrolase activity
AT03_RS01290	COG2861	carbohydrate metabolic process
AT03_RS01295	COG4942	peptidase
AT03_RS01300	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AT03_RS01305	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AT03_RS01310	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AT03_RS01320	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AT03_RS01325	COG1045	serine acetyltransferase
AT03_RS01330	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AT03_RS01335	COG2205	protein histidine kinase activity
AT03_RS01340	COG0745	RESPONSE REGULATOR receiver
AT03_RS01345	COG3678	ATP-independent chaperone mediated protein folding
AT03_RS01350	COG1368	sulfuric ester hydrolase activity
AT03_RS01355	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AT03_RS01365	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AT03_RS01370	COG0149	triose-phosphate isomerase activity
AT03_RS01380	COG3152	Membrane
AT03_RS01395	COG2814	Major facilitator Superfamily
AT03_RS01400	COG1494	fructose-1,6-bisphosphatase
AT03_RS01420	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AT03_RS01425	COG3074	FtsZ-dependent cytokinesis
AT03_RS01430	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AT03_RS01435	COG1575	Belongs to the MenA family. Type 1 subfamily
AT03_RS01440	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AT03_RS01445	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AT03_RS01450	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AT03_RS01455	COG1609	Transcriptional regulator
AT03_RS01460	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AT03_RS01465	COG0254	rRNA binding
AT03_RS01470	COG2194	sulfuric ester hydrolase activity
AT03_RS01475	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AT03_RS01485	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AT03_RS01500	COG0165	Argininosuccinate lyase
AT03_RS01505	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AT03_RS01510	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AT03_RS01510	COG0678	peroxiredoxin activity
AT03_RS01520	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AT03_RS01535	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AT03_RS01545	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AT03_RS01585	COG0583	DNA-binding transcription factor activity
AT03_RS01590	COG3085	chromosome segregation
AT03_RS01600	COG2814	Major facilitator Superfamily
AT03_RS01610	COG3978	acetolactate synthase activity
AT03_RS01620	COG0129	dihydroxy-acid dehydratase activity
AT03_RS01660	COG0210	DNA helicase
AT03_RS01670	COG2095	MarC family integral membrane protein
AT03_RS01680	COG0248	Ppx GppA phosphatase
AT03_RS01690	COG3118	belongs to the thioredoxin family
AT03_RS01695	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AT03_RS01700	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AT03_RS01705	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
AT03_RS01710	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
AT03_RS01715	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AT03_RS01720	COG1088	dTDP-glucose 4,6-dehydratase activity
AT03_RS01725	COG0456	acetyltransferase
AT03_RS01730	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AT03_RS01735	COG2244	polysaccharide biosynthetic process
AT03_RS01740	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AT03_RS01780	COG3071	HemY protein
AT03_RS01785	COG2959	enzyme of heme biosynthesis
AT03_RS01790	COG1587	Uroporphyrinogen-III synthase
AT03_RS01800	COG3072	Adenylate cyclase
AT03_RS01805	COG1965	Belongs to the frataxin family
AT03_RS01830	COG1011	Hydrolase
AT03_RS01835	COG0210	DNA helicase
AT03_RS01850	COG2962	Rard protein
AT03_RS01855	COG2050	protein possibly involved in aromatic compounds catabolism
AT03_RS01860	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
AT03_RS01870	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AT03_RS01875	COG0339	signal peptide processing
AT03_RS01890	COG0745	RESPONSE REGULATOR receiver
AT03_RS01895	COG5002	protein histidine kinase activity
AT03_RS01900	COG1280	lysine exporter protein (LysE YggA)
AT03_RS01905	COG2610	gluconate transmembrane transporter activity
AT03_RS01910	COG3265	gluconokinase activity
AT03_RS01915	COG1609	Transcriptional regulator
AT03_RS01920	COG2723	6-phospho-beta-galactosidase activity
AT03_RS01925	COG1741	Belongs to the pirin family
AT03_RS01950	COG2249	NAD(P)H dehydrogenase (quinone) activity
AT03_RS01955	COG0583	DNA-binding transcription factor activity
AT03_RS01960	COG0697	spore germination
AT03_RS01965	COG0583	DNA-binding transcription factor activity
AT03_RS01980	COG2207	Transcriptional regulator
AT03_RS01985	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AT03_RS01990	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AT03_RS01995	COG1882	Formate acetyltransferase
AT03_RS02000	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AT03_RS02005	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AT03_RS02010	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS02010	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AT03_RS02010	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS02030	COG2365	Tyrosine phosphatase family
AT03_RS02035	COG1966	Carbon starvation protein
AT03_RS02040	COG0586	Pfam SNARE associated Golgi protein
AT03_RS02045	COG1322	Protein conserved in bacteria
AT03_RS02055	COG3165	ubiquinone biosynthetic process from chorismate
AT03_RS02060	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AT03_RS02065	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AT03_RS02070	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AT03_RS02075	COG0805	protein transport
AT03_RS02110	COG0183	Belongs to the thiolase family
AT03_RS02115	COG1250	3-hydroxyacyl-CoA dehydrogenase
AT03_RS02115	COG1024	Enoyl-CoA hydratase
AT03_RS02125	COG1739	Uncharacterized protein family UPF0029
AT03_RS02130	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AT03_RS02160	COG4607	ABC-type enterochelin transport system periplasmic component
AT03_RS02165	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AT03_RS02175	COG1072	(Pantothenic acid kinase))
AT03_RS02210	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AT03_RS02220	COG0250	Participates in transcription elongation, termination and antitermination
AT03_RS02225	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AT03_RS02235	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AT03_RS02240	COG0222	ribosome binding
AT03_RS02250	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AT03_RS02260	COG2022	thiamine diphosphate biosynthetic process
AT03_RS02265	COG2104	thiamine diphosphate biosynthetic process
AT03_RS02270	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AT03_RS02275	COG0352	thiamine-phosphate diphosphorylase activity
AT03_RS02280	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AT03_RS02285	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
AT03_RS02295	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AT03_RS02300	COG1515	deoxyribonuclease V activity
AT03_RS02305	COG3068	Protein conserved in bacteria
AT03_RS02320	COG0151	Belongs to the GarS family
AT03_RS02360	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AT03_RS02365	COG3162	membrane
AT03_RS02370	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AT03_RS02375	COG1301	dicarboxylic acid transport
AT03_RS02385	COG1538	Outer membrane efflux protein
AT03_RS02390	COG0494	nUDIX hydrolase
AT03_RS02395	COG3151	Protein conserved in bacteria
AT03_RS02400	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AT03_RS02405	COG3150	esterase
AT03_RS02435	COG3716	PTS system mannose fructose sorbose family IID component
AT03_RS02440	COG3715	PTS system
AT03_RS02445	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS02450	COG2188	Transcriptional regulator
AT03_RS02455	COG2222	sugar isomerase
AT03_RS02475	COG0243	molybdopterin cofactor binding
AT03_RS02495	COG0527	aspartate kinase activity
AT03_RS02505	COG0166	Belongs to the GPI family
AT03_RS02510	COG3645	SOS response
AT03_RS02515	COG1301	dicarboxylic acid transport
AT03_RS02525	COG3833	ABC-type maltose transport systems, permease component
AT03_RS02530	COG1175	transmembrane transport
AT03_RS02535	COG2182	Extracellular solute-binding protein
AT03_RS02545	COG4580	involved in the transport of maltose and maltodextrins
AT03_RS02555	COG3161	chorismate lyase activity
AT03_RS02570	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AT03_RS02575	COG0471	metal ion transport
AT03_RS02590	COG3051	citrate lyase alpha subunit
AT03_RS02595	COG2301	Belongs to the HpcH HpaI aldolase family
AT03_RS02605	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
AT03_RS02610	COG3290	protein histidine kinase activity
AT03_RS02615	COG4565	transcriptional regulatory protein
AT03_RS02625	COG0534	Mate efflux family protein
AT03_RS02630	COG3237	CsbD-like
AT03_RS02635	COG0735	belongs to the Fur family
AT03_RS02645	COG1309	transcriptional regulator
AT03_RS02650	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AT03_RS02675	COG1979	alcohol dehydrogenase
AT03_RS02680	COG2207	Transcriptional regulator
AT03_RS02700	COG0840	transmembrane signaling receptor activity
AT03_RS02730	COG1982	Orn Lys Arg decarboxylase major
AT03_RS02735	COG0531	amino acid
AT03_RS02750	COG0741	lytic transglycosylase activity
AT03_RS02755	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
AT03_RS02760	COG1194	a g-specific adenine glycosylase
AT03_RS02770	COG3171	Protein conserved in bacteria
AT03_RS02790	COG1349	DNA-binding transcription factor activity
AT03_RS02800	COG1070	Carbohydrate kinase
AT03_RS02810	COG0738	Major facilitator superfamily
AT03_RS02815	COG0235	Class ii aldolase
AT03_RS02820	COG1454	alcohol dehydrogenase
AT03_RS02825	COG3247	response to pH
AT03_RS02830	COG2223	nitrite transmembrane transporter activity
AT03_RS02840	COG3781	membrane
AT03_RS02850	COG1294	oxidase, subunit
AT03_RS02855	COG1271	oxidase subunit
AT03_RS02860	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AT03_RS02865	COG0583	DNA-binding transcription factor activity
AT03_RS02875	COG3479	Phenolic acid decarboxylase
AT03_RS02895	COG3423	Transcriptional regulator
AT03_RS02915	COG1309	transcriptional regulator
AT03_RS02920	COG4232	protein-disulfide reductase activity
AT03_RS02930	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
AT03_RS02935	COG1027	Aspartate ammonia-lyase
AT03_RS02945	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AT03_RS02965	COG1461	Dihydroxyacetone kinase
AT03_RS02970	COG2376	Dihydroxyacetone kinase
AT03_RS02980	COG5463	Belongs to the UPF0441 family
AT03_RS02985	COG0754	glutathionylspermidine amidase activity
AT03_RS02995	COG0531	amino acid
AT03_RS03000	COG3091	SprT-like family
AT03_RS03005	COG2356	endonuclease I
AT03_RS03010	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AT03_RS03015	COG0189	ligase activity
AT03_RS03020	COG1678	Uncharacterized ACR, COG1678
AT03_RS03025	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AT03_RS03030	COG4115	mRNA cleavage
AT03_RS03035	COG2161	toxin-antitoxin pair type II binding
AT03_RS03040	COG2805	Type II/IV secretion system protein
AT03_RS03045	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AT03_RS03050	COG0762	integral membrane protein
AT03_RS03060	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AT03_RS03065	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AT03_RS03080	COG5510	response to toxic substance
AT03_RS03085	COG5510	response to toxic substance
AT03_RS03105	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
AT03_RS03110	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AT03_RS03115	COG1053	succinate dehydrogenase
AT03_RS03125	COG3264	Mechanosensitive ion channel
AT03_RS03125	COG1511	domain protein
AT03_RS03140	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AT03_RS03160	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AT03_RS03165	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AT03_RS03165	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AT03_RS03170	COG0802	atpase or kinase
AT03_RS03175	COG0860	N-Acetylmuramoyl-L-alanine amidase
AT03_RS03180	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AT03_RS03185	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AT03_RS03190	COG1923	regulation of RNA biosynthetic process
AT03_RS03195	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AT03_RS03200	COG0330	HflC and HflK could
AT03_RS03205	COG0330	HflC and HflK could
AT03_RS03210	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
AT03_RS03220	COG1959	2 iron, 2 sulfur cluster binding
AT03_RS03225	COG0557	exoribonuclease II activity
AT03_RS03230	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AT03_RS03235	COG1960	acyl-CoA dehydrogenase activity
AT03_RS03245	COG3650	response to hydrogen peroxide
AT03_RS03250	COG1073	alpha beta
AT03_RS03260	COG0360	Binds together with S18 to 16S ribosomal RNA
AT03_RS03265	COG2965	DNA replication, synthesis of RNA primer
AT03_RS03270	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AT03_RS03275	COG0359	binds to the 23S rRNA
AT03_RS03285	COG3061	Opacity-associated protein A
AT03_RS03290	COG0545	Peptidyl-prolyl cis-trans isomerase
AT03_RS03295	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
AT03_RS03305	COG0737	Belongs to the 5'-nucleotidase family
AT03_RS03310	COG1218	3'(2'),5'-bisphosphate nucleotidase
AT03_RS03315	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
AT03_RS03325	COG1253	flavin adenine dinucleotide binding
AT03_RS03335	COG0729	surface antigen
AT03_RS03345	COG2105	PFAM AIG2 family protein
AT03_RS03350	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AT03_RS03355	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AT03_RS03360	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AT03_RS03375	COG1438	arginine binding
AT03_RS03385	COG3423	Transcriptional regulator
AT03_RS03395	COG0142	geranyltranstransferase activity
AT03_RS03400	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AT03_RS03415	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AT03_RS03420	COG0642	Histidine kinase
AT03_RS03425	COG0745	RESPONSE REGULATOR receiver
AT03_RS03430	COG2027	D-alanyl-D-alanine carboxypeptidase
AT03_RS03440	COG1534	Rna-binding protein
AT03_RS03455	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AT03_RS03460	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AT03_RS03465	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AT03_RS03485	COG0195	Participates in both transcription termination and antitermination
AT03_RS03495	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AT03_RS03500	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AT03_RS03510	COG1185	polyribonucleotide nucleotidyltransferase activity
AT03_RS03520	COG0513	Belongs to the DEAD box helicase family
AT03_RS03525	COG2391	methyltransferase activity
AT03_RS03530	COG0425	Belongs to the sulfur carrier protein TusA family
AT03_RS03535	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AT03_RS03540	COG0814	amino acid
AT03_RS03550	COG0826	peptidase U32
AT03_RS03555	COG0826	peptidase U32
AT03_RS03560	COG3154	lipid carrier protein
AT03_RS03565	COG3153	acetyltransferase
AT03_RS03585	COG2827	Endonuclease containing a URI domain
AT03_RS03590	COG3787	Belongs to the UPF0306 family
AT03_RS03595	COG0702	epimerase
AT03_RS03600	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AT03_RS03605	COG0456	acetyltransferase
AT03_RS03615	COG3454	Phosphonate metabolism
AT03_RS03620	COG4778	phosphonate C-P lyase system protein PhnL
AT03_RS03625	COG4107	phosphonate C-P lyase system protein PhnK
AT03_RS03630	COG3627	carbon phosphorus lyase activity
AT03_RS03635	COG3626	phosphonate metabolism
AT03_RS03640	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
AT03_RS03645	COG3624	Phosphonate C-P lyase system protein PhnG
AT03_RS03650	COG2188	Transcriptional regulator
AT03_RS03655	COG3639	organic phosphonate transmembrane transporter activity
AT03_RS03660	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
AT03_RS03670	COG0602	queuosine metabolic process
AT03_RS03690	COG1741	Belongs to the pirin family
AT03_RS03695	COG0583	DNA-binding transcription factor activity
AT03_RS03705	COG0861	Integral membrane protein TerC family
AT03_RS03710	COG0519	Catalyzes the synthesis of GMP from XMP
AT03_RS03710	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AT03_RS03715	COG0697	spore germination
AT03_RS03720	COG0673	inositol 2-dehydrogenase activity
AT03_RS03725	COG1451	nucleotide metabolic process
AT03_RS03730	COG2813	Specifically methylates the guanine in position
AT03_RS03735	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AT03_RS03745	COG0642	Histidine kinase
AT03_RS03755	COG3111	PFAM Bacterial OB fold (BOF) protein
AT03_RS03760	COG0446	pyridine nucleotide-disulphide oxidoreductase
AT03_RS03760	COG1902	pentaerythritol trinitrate reductase activity
AT03_RS03795	COG4983	Phage plasmid primase, P4 family domain protein
AT03_RS03825	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AT03_RS03835	COG0732	type I restriction modification DNA specificity domain
AT03_RS03840	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AT03_RS03845	COG3596	GTP binding
AT03_RS03855	COG2378	regulation of single-species biofilm formation
AT03_RS03860	COG3468	outer membrane autotransporter barrel domain protein
AT03_RS03870	COG2003	Belongs to the UPF0758 family
AT03_RS03905	COG3663	DNA glycosylase
AT03_RS03910	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AT03_RS03915	COG0358	DNA primase activity
AT03_RS03920	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AT03_RS03930	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AT03_RS03935	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AT03_RS03940	COG1968	undecaprenyl-diphosphatase activity
AT03_RS03950	COG4991	sh3 domain protein
AT03_RS03955	COG0306	phosphate transporter
AT03_RS03960	COG1392	Phosphate transport regulator
AT03_RS03965	COG3025	triphosphatase activity
AT03_RS03970	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AT03_RS03985	COG1560	Kdo2-lipid A biosynthetic process
AT03_RS03990	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AT03_RS03990	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
AT03_RS03995	COG0531	amino acid
AT03_RS04000	COG2960	long-chain fatty acid transporting porin activity
AT03_RS04015	COG3384	dioxygenase
AT03_RS04035	COG3486	L-lysine 6-monooxygenase (NADPH) activity
AT03_RS04040	COG4774	siderophore transport
AT03_RS04045	COG3152	Membrane
AT03_RS04050	COG4114	ferric iron reductase
AT03_RS04055	COG3706	GGDEF domain
AT03_RS04080	COG2813	Specifically methylates the guanine in position
AT03_RS04085	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
AT03_RS04090	COG0456	acetyltransferase
AT03_RS04100	COG2823	Periplasmic or secreted lipoprotein
AT03_RS04110	COG4667	esterase of the alpha-beta hydrolase superfamily
AT03_RS04115	COG0084	hydrolase, TatD family'
AT03_RS04120	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AT03_RS04130	COG2721	sulfolactate sulfo-lyase activity
AT03_RS04145	COG2271	Major facilitator Superfamily
AT03_RS04155	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AT03_RS04165	COG0586	Pfam SNARE associated Golgi protein
AT03_RS04175	COG1422	Protein of unknown function (DUF1090)
AT03_RS04180	COG4575	ribosome binding
AT03_RS04185	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
AT03_RS04195	COG2259	Doxx family
AT03_RS04200	COG0435	Glutathione S-transferase
AT03_RS04205	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AT03_RS04210	COG1328	CTP reductase activity
AT03_RS04220	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
AT03_RS04225	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
AT03_RS04235	COG2814	Major facilitator Superfamily
AT03_RS04245	COG1166	arginine decarboxylase activity
AT03_RS04260	COG0010	Belongs to the arginase family
AT03_RS04270	COG0243	molybdopterin cofactor binding
AT03_RS04270	COG3383	formate dehydrogenase (NAD+) activity
AT03_RS04275	COG0243	molybdopterin cofactor binding
AT03_RS04275	COG3383	formate dehydrogenase (NAD+) activity
AT03_RS04280	COG0437	4 iron, 4 sulfur cluster binding
AT03_RS04285	COG2864	formate dehydrogenase
AT03_RS04290	COG0501	Belongs to the peptidase M48B family
AT03_RS04295	COG0501	Belongs to the peptidase M48B family
AT03_RS04300	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AT03_RS04305	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AT03_RS04315	COG0191	fructose-bisphosphate aldolase activity
AT03_RS04325	COG1279	arginine transmembrane transporter activity
AT03_RS04340	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AT03_RS04345	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AT03_RS04350	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AT03_RS04355	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
AT03_RS04360	COG3079	Belongs to the UPF0149 family
AT03_RS04365	COG0006	proline dipeptidase activity
AT03_RS04370	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AT03_RS04375	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AT03_RS04380	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AT03_RS04385	COG0509	glycine decarboxylation via glycine cleavage system
AT03_RS04390	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AT03_RS04390	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AT03_RS04410	COG1115	amino acid carrier protein
AT03_RS04415	COG1272	protein, Hemolysin III
AT03_RS04420	COG3248	Nucleoside-binding outer membrane protein
AT03_RS04425	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AT03_RS04430	COG0354	folic acid binding
AT03_RS04435	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AT03_RS04445	COG0716	FMN binding
AT03_RS04450	COG4974	Belongs to the 'phage' integrase family
AT03_RS04455	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AT03_RS04460	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AT03_RS04480	COG4974	Belongs to the 'phage' integrase family
AT03_RS04520	COG4589	Belongs to the CDS family
AT03_RS04525	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AT03_RS04535	COG3706	GGDEF domain
AT03_RS04545	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AT03_RS04570	COG0457	Tetratricopeptide repeat
AT03_RS04580	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AT03_RS04595	COG0583	DNA-binding transcription factor activity
AT03_RS04615	COG0309	Hydrogenase expression formation protein (HypE)
AT03_RS04620	COG0409	Hydrogenase expression formation protein
AT03_RS04625	COG0298	carbon dioxide binding
AT03_RS04630	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
AT03_RS04640	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
AT03_RS04645	COG3383	formate dehydrogenase (NAD+) activity
AT03_RS04650	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS04655	COG3383	formate dehydrogenase (NAD+) activity
AT03_RS04660	COG3383	formate dehydrogenase (NAD+) activity
AT03_RS04665	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
AT03_RS04675	COG3260	NADH ubiquinone oxidoreductase 20
AT03_RS04680	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT03_RS04685	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
AT03_RS04685	COG3261	NADH dehydrogenase
AT03_RS04690	COG0650	Formate hydrogenlyase subunit 4
AT03_RS04695	COG0651	ATP synthesis coupled electron transport
AT03_RS04700	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS04705	COG1609	Transcriptional regulator
AT03_RS04710	COG1609	Transcriptional regulator
AT03_RS04725	COG0667	Aldo Keto reductase
AT03_RS04730	COG1785	Belongs to the alkaline phosphatase family
AT03_RS04740	COG0861	Integral membrane protein TerC family
AT03_RS04745	COG3066	DNA modification
AT03_RS04750	COG1051	belongs to the nudix hydrolase family
AT03_RS04770	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AT03_RS04785	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AT03_RS04795	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AT03_RS04800	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AT03_RS04815	COG2951	lytic endotransglycosylase activity
AT03_RS04830	COG2137	regulation of response to DNA damage stimulus
AT03_RS04840	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
AT03_RS04870	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AT03_RS04875	COG1238	metal cluster binding
AT03_RS04890	COG4536	flavin adenine dinucleotide binding
AT03_RS04895	COG4137	Cytochrome C assembly protein
AT03_RS04900	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AT03_RS04905	COG0228	four-way junction DNA binding
AT03_RS04915	COG0336	Belongs to the RNA methyltransferase TrmD family
AT03_RS04925	COG3137	Salt-induced outer membrane protein
AT03_RS04930	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
AT03_RS04940	COG3279	Response regulator of the LytR AlgR family
AT03_RS04945	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AT03_RS04950	COG1605	Chorismate mutase
AT03_RS04950	COG0287	Prephenate dehydrogenase
AT03_RS04955	COG0077	Prephenate dehydratase
AT03_RS04955	COG1605	Chorismate mutase
AT03_RS04960	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AT03_RS04965	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AT03_RS04970	COG0564	pseudouridine synthase activity
AT03_RS04975	COG1496	oxidoreductase activity
AT03_RS04980	COG0542	response to heat
AT03_RS05020	COG3157	Type VI secretion system effector, Hcp
AT03_RS05120	COG3501	Rhs element vgr protein
AT03_RS05130	COG3209	COG3209 Rhs family protein
AT03_RS05145	COG3209	COG3209 Rhs family protein
AT03_RS05145	COG4104	PAAR repeat-containing protein
AT03_RS05170	COG3209	COG3209 Rhs family protein
AT03_RS05170	COG4104	PAAR repeat-containing protein
AT03_RS05185	COG3021	interspecies interaction between organisms
AT03_RS05190	COG1388	LysM domain
AT03_RS05190	COG0741	lytic transglycosylase activity
AT03_RS05200	COG2226	methyltransferase
AT03_RS05220	COG0583	DNA-binding transcription factor activity
AT03_RS05230	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AT03_RS05235	COG3842	ATPase activity
AT03_RS05240	COG1176	ABC-type spermidine putrescine transport system, permease component I
AT03_RS05245	COG1177	transmembrane transport
AT03_RS05250	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS05255	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
AT03_RS05265	COG1940	carbohydrate kinase activity
AT03_RS05270	COG0457	Tetratricopeptide repeat
AT03_RS05275	COG0477	Major facilitator Superfamily
AT03_RS05275	COG2814	Major facilitator Superfamily
AT03_RS05285	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AT03_RS05285	COG1017	nitric oxide dioxygenase activity
AT03_RS05295	COG3711	transcriptional antiterminator
AT03_RS05300	COG3683	transport system, periplasmic component
AT03_RS05305	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
AT03_RS05310	COG0483	inositol monophosphate 1-phosphatase activity
AT03_RS05315	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
AT03_RS05320	COG1959	2 iron, 2 sulfur cluster binding
AT03_RS05330	COG0822	iron-sulfur transferase activity
AT03_RS05340	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AT03_RS05345	COG0443	Heat shock 70 kDa protein
AT03_RS05350	COG0633	Ferredoxin
AT03_RS05355	COG2975	iron-sulfur cluster assembly
AT03_RS05370	COG2373	Large extracellular alpha-helical protein
AT03_RS05375	COG4953	penicillin-binding protein 1C
AT03_RS05400	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AT03_RS05410	COG2976	Protein conserved in bacteria
AT03_RS05415	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AT03_RS05420	COG1160	GTP binding
AT03_RS05430	COG1645	bacterial-type flagellum-dependent swarming motility
AT03_RS05440	COG1263	PTS System
AT03_RS05440	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS05445	COG1570	exodeoxyribonuclease VII activity
AT03_RS05450	COG0516	GMP reductase activity
AT03_RS05450	COG0517	IMP dehydrogenase activity
AT03_RS05455	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AT03_RS05455	COG0519	Catalyzes the synthesis of GMP from XMP
AT03_RS05480	COG0316	Belongs to the HesB IscA family
AT03_RS05485	COG2764	glyoxalase bleomycin resistance protein dioxygenase
AT03_RS05500	COG2860	membrane
AT03_RS05510	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AT03_RS05515	COG0232	Belongs to the dGTPase family. Type 2 subfamily
AT03_RS05520	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AT03_RS05525	COG2814	Major facilitator Superfamily
AT03_RS05530	COG1566	PFAM secretion protein HlyD family protein
AT03_RS05540	COG1846	Transcriptional regulator
AT03_RS05550	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AT03_RS05560	COG2376	Dihydroxyacetone kinase
AT03_RS05565	COG1461	Dihydroxyacetone kinase
AT03_RS05570	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS05580	COG2376	Dihydroxyacetone kinase
AT03_RS05595	COG3775	system Galactitol-specific IIC component
AT03_RS05600	COG3414	Phosphotransferase system galactitol-specific IIB component
AT03_RS05610	COG0697	spore germination
AT03_RS05620	COG0783	Belongs to the Dps family
AT03_RS05630	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AT03_RS05640	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
AT03_RS05650	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
AT03_RS05715	COG1492	cobalamin metabolic process
AT03_RS05720	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
AT03_RS05725	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AT03_RS05785	COG0583	DNA-binding transcription factor activity
AT03_RS05800	COG0738	Major facilitator superfamily
AT03_RS05805	COG2199	diguanylate cyclase activity
AT03_RS05835	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AT03_RS05840	COG2867	negative regulation of translational initiation
AT03_RS05845	COG2914	Belongs to the UPF0125 (RnfH) family
AT03_RS05850	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AT03_RS05855	COG0497	DNA recombination
AT03_RS05865	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AT03_RS05870	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AT03_RS05880	COG0513	Belongs to the DEAD box helicase family
AT03_RS05890	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AT03_RS05900	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
AT03_RS05905	COG3026	antisigma factor binding
AT03_RS05910	COG3086	response to oxidative stress
AT03_RS05915	COG0481	GTPase activity
AT03_RS05920	COG0681	Belongs to the peptidase S26 family
AT03_RS05930	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AT03_RS05935	COG1381	Involved in DNA repair and RecF pathway recombination
AT03_RS05940	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AT03_RS05945	COG0736	holo-[acyl-carrier-protein] synthase activity
AT03_RS05950	COG2205	protein histidine kinase activity
AT03_RS05950	COG3437	response regulator, receiver
AT03_RS05950	COG4999	Histidine kinase
AT03_RS05950	COG3850	Histidine kinase
AT03_RS05955	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AT03_RS05960	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AT03_RS05965	COG3706	GGDEF domain
AT03_RS05970	COG2200	EAL domain
AT03_RS05975	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AT03_RS05980	COG3327	negative regulation of DNA-templated transcription, initiation
AT03_RS05985	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
AT03_RS05990	COG0183	Belongs to the thiolase family
AT03_RS05995	COG2050	protein possibly involved in aromatic compounds catabolism
AT03_RS06000	COG1250	3-hydroxyacyl-CoA dehydrogenase
AT03_RS06005	COG1024	Enoyl-CoA hydratase
AT03_RS06010	COG1024	Enoyl-CoA hydratase
AT03_RS06015	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AT03_RS06020	COG2151	metal-sulfur cluster biosynthetic enzyme
AT03_RS06025	COG3396	Phenylacetate-CoA oxygenase
AT03_RS06030	COG3460	Phenylacetate-CoA oxygenase
AT03_RS06035	COG3396	Phenylacetate-CoA oxygenase
AT03_RS06040	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS06040	COG2030	dehydratase
AT03_RS06045	COG3956	TIGRFAM MazG family protein
AT03_RS06050	COG0504	CTP synthase activity
AT03_RS06055	COG0148	phosphopyruvate hydratase activity
AT03_RS06060	COG2841	Protein conserved in bacteria
AT03_RS06070	COG0765	amino acid transport
AT03_RS06075	COG1126	abc transporter atp-binding protein
AT03_RS06085	COG2986	histidine ammonia-lyase
AT03_RS06090	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AT03_RS06095	COG3118	belongs to the thioredoxin family
AT03_RS06100	COG0300	oxidoreductase activity
AT03_RS06105	COG2755	lipolytic protein G-D-S-L family
AT03_RS06110	COG4181	ATPase activity
AT03_RS06115	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AT03_RS06120	COG3706	GGDEF domain
AT03_RS06125	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AT03_RS06130	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AT03_RS06135	COG3706	GGDEF domain
AT03_RS06145	COG1484	DNA-dependent DNA replication
AT03_RS06150	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AT03_RS06155	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AT03_RS06165	COG2501	S4 domain
AT03_RS06170	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS06175	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AT03_RS06190	COG0814	amino acid
AT03_RS06200	COG0456	acetyltransferase
AT03_RS06225	COG1252	NADH dehydrogenase
AT03_RS06230	COG0534	Mate efflux family protein
AT03_RS06240	COG2186	Transcriptional regulator
AT03_RS06260	COG2351	hydroxyisourate hydrolase activity
AT03_RS06265	COG1309	transcriptional regulator
AT03_RS06270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT03_RS06275	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT03_RS06280	COG1879	ABC-type sugar transport system periplasmic component
AT03_RS06285	COG1129	ABC transporter
AT03_RS06290	COG1172	Belongs to the binding-protein-dependent transport system permease family
AT03_RS06295	COG1172	Belongs to the binding-protein-dependent transport system permease family
AT03_RS06310	COG1454	alcohol dehydrogenase
AT03_RS06340	COG4989	oxidoreductase activity
AT03_RS06345	COG3539	Fimbrial protein
AT03_RS06355	COG3188	usher protein
AT03_RS06360	COG3121	Chaperone
AT03_RS06370	COG3539	Fimbrial protein
AT03_RS06400	COG1132	(ABC) transporter
AT03_RS06405	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT03_RS06415	COG1538	Outer membrane efflux protein
AT03_RS06420	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AT03_RS06435	COG1028	Short-chain dehydrogenase reductase Sdr
AT03_RS06475	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AT03_RS06495	COG0321	lipoyl(octanoyl) transferase activity
AT03_RS06505	COG1686	Belongs to the peptidase S11 family
AT03_RS06510	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AT03_RS06515	COG0772	Belongs to the SEDS family
AT03_RS06520	COG0768	penicillin binding
AT03_RS06525	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AT03_RS06530	COG0799	negative regulation of ribosome biogenesis
AT03_RS06535	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AT03_RS06540	COG1466	dna polymerase III delta subunit
AT03_RS06545	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
AT03_RS06550	COG0495	leucyl-tRNA aminoacylation
AT03_RS06555	COG2888	peptidyl-tyrosine sulfation
AT03_RS06560	COG1957	nucleoside hydrolase
AT03_RS06570	COG1126	abc transporter atp-binding protein
AT03_RS06575	COG0765	amino acid transport
AT03_RS06580	COG0765	amino acid transport
AT03_RS06595	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AT03_RS06600	COG4535	Mg2 and Co2 transporter CorC
AT03_RS06610	COG1702	phosphate starvation-inducible protein PhoH
AT03_RS06615	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AT03_RS06620	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AT03_RS06660	COG0367	asparagine synthase
AT03_RS06665	COG0647	UMP catabolic process
AT03_RS06670	COG1940	carbohydrate kinase activity
AT03_RS06670	COG1846	Transcriptional regulator
AT03_RS06675	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AT03_RS06685	COG2190	(PTS) system
AT03_RS06685	COG1263	PTS System
AT03_RS06685	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS06710	COG0735	belongs to the Fur family
AT03_RS06715	COG0716	FMN binding
AT03_RS06725	COG0596	Alpha beta hydrolase
AT03_RS06735	COG0033	Phosphoglucomutase
AT03_RS06745	COG0745	RESPONSE REGULATOR receiver
AT03_RS06750	COG2205	protein histidine kinase activity
AT03_RS06755	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AT03_RS06760	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AT03_RS06785	COG3272	Protein of unknown function (DUF1722)
AT03_RS06795	COG5212	phosphodiesterase
AT03_RS06800	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AT03_RS06805	COG2824	Alkylphosphonate utilization operon protein PhnA
AT03_RS06810	COG0583	DNA-binding transcription factor activity
AT03_RS06820	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AT03_RS06825	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AT03_RS06830	COG1984	allophanate hydrolase subunit 2
AT03_RS06835	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
AT03_RS06840	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AT03_RS06855	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AT03_RS06860	COG1053	succinate dehydrogenase
AT03_RS06870	COG0567	Dehydrogenase, E1 component
AT03_RS06875	COG0508	dehydrogenase complex catalyzes the overall conversion of
AT03_RS06885	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AT03_RS06890	COG1271	oxidase subunit
AT03_RS06895	COG1294	oxidase, subunit
AT03_RS06900	COG3790	cyd operon protein YbgE
AT03_RS06905	COG0824	Thioesterase
AT03_RS06910	COG0811	peptide transport
AT03_RS06915	COG0848	biopolymer transport protein
AT03_RS06920	COG3064	Membrane
AT03_RS06930	COG2885	chlorophyll binding
AT03_RS06935	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
AT03_RS06970	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AT03_RS06975	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AT03_RS06980	COG1230	cation diffusion facilitator family transporter
AT03_RS06990	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AT03_RS07010	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT03_RS07050	COG1464	Belongs to the NlpA lipoprotein family
AT03_RS07080	COG0679	Auxin Efflux Carrier
AT03_RS07090	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AT03_RS07115	COG1732	Glycine betaine
AT03_RS07120	COG1174	glycine betaine transport
AT03_RS07125	COG1125	glycine betaine transport
AT03_RS07130	COG1174	glycine betaine transport
AT03_RS07140	COG1671	Belongs to the UPF0178 family
AT03_RS07155	COG3250	beta-galactosidase activity
AT03_RS07160	COG0456	acetyltransferase
AT03_RS07175	COG2837	iron assimilation
AT03_RS07180	COG4150	thiosulfate binding
AT03_RS07185	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AT03_RS07190	COG4208	sulfate ABC transporter
AT03_RS07200	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AT03_RS07205	COG2190	(PTS) system
AT03_RS07215	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS07230	COG3115	cell septum assembly
AT03_RS07235	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AT03_RS07240	COG3530	Putative quorum-sensing-regulated virulence factor
AT03_RS07250	COG1215	transferase activity, transferring glycosyl groups
AT03_RS07255	COG1649	PFAM Uncharacterised BCR, COG1649
AT03_RS07255	COG0726	polysaccharide deacetylase
AT03_RS07305	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AT03_RS07335	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AT03_RS07340	COG1914	H( )-stimulated, divalent metal cation uptake system
AT03_RS07350	COG0110	maltose O-acetyltransferase activity
AT03_RS07355	COG0667	Aldo Keto reductase
AT03_RS07360	COG3961	Belongs to the TPP enzyme family
AT03_RS07375	COG1794	racemase activity, acting on amino acids and derivatives
AT03_RS07390	COG3279	Response regulator of the LytR AlgR family
AT03_RS07395	COG3275	phosphorelay sensor kinase activity
AT03_RS07410	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
AT03_RS07415	COG2943	transferase activity, transferring hexosyl groups
AT03_RS07430	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AT03_RS07435	COG0303	'Molybdopterin
AT03_RS07450	COG0583	DNA-binding transcription factor activity
AT03_RS07455	COG0477	Major facilitator Superfamily
AT03_RS07460	COG0302	gtp cyclohydrolase
AT03_RS07465	COG2311	Membrane
AT03_RS07490	COG2200	EAL domain
AT03_RS07490	COG2199	diguanylate cyclase activity
AT03_RS07495	COG2949	membrane
AT03_RS07500	COG0281	malic enzyme
AT03_RS07505	COG0295	cytidine deaminase activity
AT03_RS07510	COG1346	cytolysis
AT03_RS07515	COG1380	Effector of murein hydrolase LrgA
AT03_RS07520	COG2814	Major facilitator Superfamily
AT03_RS07530	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT03_RS07535	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS07540	COG1917	Cupin 2, conserved barrel domain protein
AT03_RS07540	COG1396	sequence-specific DNA binding
AT03_RS07545	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AT03_RS07550	COG0174	glutamine synthetase
AT03_RS07555	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AT03_RS07565	COG0531	amino acid
AT03_RS07580	COG2962	Rard protein
AT03_RS07585	COG2925	Exonuclease
AT03_RS07590	COG1289	transmembrane transporter activity
AT03_RS07595	COG2113	Glycine betaine
AT03_RS07600	COG4176	ABC-type proline glycine betaine transport system permease component
AT03_RS07605	COG4175	Glycine betaine
AT03_RS07615	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AT03_RS07620	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
AT03_RS07625	COG1113	amino acid transport
AT03_RS07630	COG0791	NLP P60 protein
AT03_RS07635	COG0671	phosphoesterase, PA-phosphatase related
AT03_RS07640	COG0523	cobalamin synthesis protein
AT03_RS07650	COG2186	Transcriptional regulator
AT03_RS07655	COG2200	EAL domain
AT03_RS07660	COG0246	Mannitol dehydrogenase
AT03_RS07690	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS07690	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS07695	COG3715	PTS system
AT03_RS07700	COG3716	PTS system mannose fructose sorbose family IID component
AT03_RS07725	COG0243	molybdopterin cofactor binding
AT03_RS07730	COG3005	denitrification pathway
AT03_RS07735	COG1473	amidohydrolase
AT03_RS07740	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AT03_RS07760	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AT03_RS07765	COG0131	Imidazoleglycerol-phosphate dehydratase
AT03_RS07765	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AT03_RS07770	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AT03_RS07780	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AT03_RS07785	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AT03_RS07790	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AT03_RS07805	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
AT03_RS07815	COG1280	lysine exporter protein (LysE YggA)
AT03_RS07845	COG1070	Carbohydrate kinase
AT03_RS07850	COG2223	nitrite transmembrane transporter activity
AT03_RS07855	COG1028	Short-chain dehydrogenase reductase Sdr
AT03_RS07860	COG0277	FAD linked oxidase domain protein
AT03_RS07865	COG0477	Major facilitator Superfamily
AT03_RS07875	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
AT03_RS07880	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
AT03_RS07885	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
AT03_RS07890	COG0644	oxidoreductase
AT03_RS07895	COG1686	Belongs to the peptidase S11 family
AT03_RS07905	COG1760	l-serine dehydratase
AT03_RS07910	COG0814	amino acid
AT03_RS07915	COG1349	DNA-binding transcription factor activity
AT03_RS07920	COG0671	phosphoesterase, PA-phosphatase related
AT03_RS08000	COG0189	ligase activity
AT03_RS08015	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AT03_RS08020	COG3842	ATPase activity
AT03_RS08025	COG1176	ABC-type spermidine putrescine transport system, permease component I
AT03_RS08030	COG1177	transmembrane transport
AT03_RS08040	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AT03_RS08045	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AT03_RS08050	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT03_RS08055	COG4160	amino acid transport
AT03_RS08060	COG4215	(ABC) transporter
AT03_RS08065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT03_RS08070	COG1126	abc transporter atp-binding protein
AT03_RS08080	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AT03_RS08085	COG2207	Transcriptional regulator
AT03_RS08085	COG3708	Transcriptional regulator
AT03_RS08100	COG3023	N-Acetylmuramoyl-L-alanine amidase
AT03_RS08105	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AT03_RS08110	COG0702	epimerase
AT03_RS08115	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
AT03_RS08120	COG0028	Belongs to the TPP enzyme family
AT03_RS08125	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AT03_RS08130	COG1151	hydroxylamine reductase activity
AT03_RS08135	COG2431	L-lysine efflux transmembrane transporter activity
AT03_RS08140	COG3593	DNA synthesis involved in DNA repair
AT03_RS08145	COG2990	Protein conserved in bacteria
AT03_RS08150	COG1278	Cold shock
AT03_RS08155	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AT03_RS08160	COG0542	response to heat
AT03_RS08165	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AT03_RS08175	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AT03_RS08180	COG4988	ABC transporter
AT03_RS08185	COG0492	ferredoxin-NADP+ reductase activity
AT03_RS08190	COG1522	sequence-specific DNA binding
AT03_RS08195	COG1674	ftsk spoiiie
AT03_RS08195	COG3107	peptidoglycan biosynthetic process
AT03_RS08205	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AT03_RS08210	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AT03_RS08215	COG0243	molybdopterin cofactor binding
AT03_RS08220	COG0437	4 iron, 4 sulfur cluster binding
AT03_RS08225	COG3302	dmso reductase anchor subunit
AT03_RS08235	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS08250	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AT03_RS08255	COG1882	Formate acetyltransferase
AT03_RS08260	COG2116	formate transmembrane transporter activity
AT03_RS08265	COG1944	ATP diphosphatase activity
AT03_RS08270	COG0252	asparaginase activity
AT03_RS08275	COG2323	membrane
AT03_RS08280	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AT03_RS08285	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AT03_RS08290	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AT03_RS08295	COG0539	negative regulation of cytoplasmic translation
AT03_RS08305	COG2333	competence protein COMEC
AT03_RS08305	COG0658	competence protein
AT03_RS08315	COG1663	tetraacyldisaccharide 4'-kinase activity
AT03_RS08330	COG3214	Protein conserved in bacteria
AT03_RS08340	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AT03_RS08345	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AT03_RS08350	COG3173	Aminoglycoside phosphotransferase
AT03_RS08355	COG2233	PERMEase
AT03_RS08360	COG2233	PERMEase
AT03_RS08375	COG1434	Gram-negative-bacterium-type cell wall biogenesis
AT03_RS08380	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AT03_RS08385	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
AT03_RS08400	COG2989	Protein conserved in bacteria
AT03_RS08405	COG3108	Peptidase M15
AT03_RS08410	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AT03_RS08415	COG1448	Aminotransferase
AT03_RS08425	COG0017	Asparaginyl-tRNA synthetase
AT03_RS08430	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AT03_RS08435	COG3706	GGDEF domain
AT03_RS08440	COG0308	aminopeptidase N
AT03_RS08445	COG0431	NADPH-dependent FMN reductase
AT03_RS08450	COG0167	dihydroorotate dehydrogenase activity
AT03_RS08460	COG0633	Ferredoxin
AT03_RS08460	COG3217	Mosc domain protein beta barrel domain protein
AT03_RS08470	COG0116	Belongs to the methyltransferase superfamily
AT03_RS08470	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AT03_RS08475	COG0488	(ABC) transporter
AT03_RS08480	COG2995	paraquat-inducible protein a
AT03_RS08485	COG3008	intermembrane lipid transfer
AT03_RS08485	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AT03_RS08490	COG3009	Protein conserved in bacteria
AT03_RS08500	COG0583	DNA-binding transcription factor activity
AT03_RS08510	COG1067	ATP-dependent peptidase activity
AT03_RS08525	COG5404	Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1 1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division
AT03_RS08530	COG3070	regulator of competence-specific genes
AT03_RS08535	COG1289	transmembrane transporter activity
AT03_RS08540	COG3304	Inner membrane component domain
AT03_RS08545	COG0210	DNA helicase
AT03_RS08550	COG1803	Methylglyoxal synthase
AT03_RS08555	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
AT03_RS08560	COG1832	CoA-binding protein
AT03_RS08565	COG3785	DNA binding
AT03_RS08570	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AT03_RS08575	COG1254	Belongs to the acylphosphatase family
AT03_RS08580	COG2920	part of a sulfur-relay system
AT03_RS08585	COG0670	Belongs to the BI1 family
AT03_RS08600	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
AT03_RS08605	COG2223	nitrite transmembrane transporter activity
AT03_RS08615	COG4977	sequence-specific DNA binding
AT03_RS08615	COG1917	Cupin 2, conserved barrel domain protein
AT03_RS08630	COG2066	Belongs to the glutaminase family
AT03_RS08635	COG1301	dicarboxylic acid transport
AT03_RS08650	COG3799	methylaspartate ammonia-lyase activity
AT03_RS08655	COG4865	methylaspartate mutase activity
AT03_RS08665	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
AT03_RS08675	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AT03_RS08675	COG1648	precorrin-2 dehydrogenase activity
AT03_RS08680	COG1492	cobalamin metabolic process
AT03_RS08690	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AT03_RS08695	COG0583	DNA-binding transcription factor activity
AT03_RS08700	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AT03_RS08700	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AT03_RS08820	COG1196	nuclear chromosome segregation
AT03_RS08820	COG3264	Mechanosensitive ion channel
AT03_RS08825	COG1538	Outer membrane efflux protein
AT03_RS08830	COG0366	Alpha amylase catalytic
AT03_RS08860	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
AT03_RS08885	COG3136	membrane protein required for alginate biosynthesis
AT03_RS08895	COG2197	response regulator
AT03_RS08900	COG0322	excinuclease ABC activity
AT03_RS08905	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AT03_RS08935	COG3477	response to acidic pH
AT03_RS08950	COG3038	cytochrome b561
AT03_RS08970	COG1215	transferase activity, transferring glycosyl groups
AT03_RS08975	COG4783	chaperone-mediated protein folding
AT03_RS08990	COG2814	Major facilitator Superfamily
AT03_RS08995	COG1335	isochorismatase
AT03_RS09010	COG2194	sulfuric ester hydrolase activity
AT03_RS09015	COG0768	penicillin binding
AT03_RS09030	COG2388	GCN5-related N-acetyl-transferase
AT03_RS09035	COG3592	Divergent 4Fe-4S mono-cluster
AT03_RS09065	COG1360	Flagellar Motor Protein
AT03_RS09070	COG2198	Histidine kinase
AT03_RS09070	COG0643	Histidine kinase
AT03_RS09075	COG0835	chemotaxis
AT03_RS09080	COG0840	transmembrane signaling receptor activity
AT03_RS09085	COG0840	transmembrane signaling receptor activity
AT03_RS09090	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AT03_RS09100	COG0745	RESPONSE REGULATOR receiver
AT03_RS09105	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AT03_RS09115	COG1702	phosphate starvation-inducible protein PhoH
AT03_RS09125	COG0387	Pfam Sodium calcium exchanger
AT03_RS09130	COG0586	Pfam SNARE associated Golgi protein
AT03_RS09135	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AT03_RS09150	COG4771	TonB-dependent receptor
AT03_RS09175	COG2239	Acts as a magnesium transporter
AT03_RS09185	COG0667	Aldo Keto reductase
AT03_RS09190	COG0656	L-ascorbic acid biosynthetic process
AT03_RS09200	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AT03_RS09225	COG4964	Belongs to the GSP D family
AT03_RS09330	COG4810	utilization protein
AT03_RS09340	COG4766	ethanolamine catabolic process
AT03_RS09355	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
AT03_RS09360	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
AT03_RS09370	COG4820	ethanolamine utilization protein (EutJ)
AT03_RS09375	COG1454	alcohol dehydrogenase
AT03_RS09385	COG4819	ethanolamine utilization protein
AT03_RS09400	COG4816	utilization protein
AT03_RS09410	COG4656	Part of a membrane complex involved in electron transport
AT03_RS09420	COG2207	Transcriptional regulator
AT03_RS09435	COG2076	Multidrug Resistance protein
AT03_RS09440	COG0243	molybdopterin cofactor binding
AT03_RS09450	COG1566	PFAM secretion protein HlyD family protein
AT03_RS09455	COG0477	Major facilitator Superfamily
AT03_RS09465	COG0679	Auxin Efflux Carrier
AT03_RS09470	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AT03_RS09475	COG0028	Belongs to the TPP enzyme family
AT03_RS09485	COG3443	Belongs to the bacterial solute-binding protein 9 family
AT03_RS09490	COG0531	amino acid
AT03_RS09495	COG1982	Orn Lys Arg decarboxylase major
AT03_RS09500	COG0531	amino acid
AT03_RS09510	COG2223	nitrite transmembrane transporter activity
AT03_RS09530	COG0012	GTP binding
AT03_RS09545	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AT03_RS09560	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AT03_RS09565	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AT03_RS09570	COG2890	protein-(glutamine-N5) methyltransferase activity
AT03_RS09590	COG0659	secondary active sulfate transmembrane transporter activity
AT03_RS09595	COG4702	Belongs to the UPF0303 family
AT03_RS09635	COG1764	response to oxidative stress
AT03_RS09645	COG4134	Bacterial extracellular solute-binding protein
AT03_RS09650	COG3104	oligopeptide transport
AT03_RS09655	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AT03_RS09660	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
AT03_RS09665	COG3381	protein complex oligomerization
AT03_RS09675	COG0477	Major facilitator Superfamily
AT03_RS09680	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AT03_RS09685	COG3132	Protein of unknown function, DUF480
AT03_RS09690	COG0673	inositol 2-dehydrogenase activity
AT03_RS09695	COG0728	peptidoglycan biosynthetic process
AT03_RS09705	COG3102	Protein conserved in bacteria
AT03_RS09710	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
AT03_RS09715	COG3142	Participates in the control of copper homeostasis
AT03_RS09720	COG0500	methyltransferase
AT03_RS09730	COG1113	amino acid transport
AT03_RS09735	COG3788	relative of glutathione S-transferase, MAPEG superfamily
AT03_RS09740	COG1801	Protein of unknown function DUF72
AT03_RS09760	COG0494	nUDIX hydrolase
AT03_RS09765	COG0217	transcriptional regulatory protein
AT03_RS09775	COG0632	four-way junction helicase activity
AT03_RS09785	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AT03_RS09790	COG1121	(ABC) transporter
AT03_RS09795	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
AT03_RS09800	COG0739	heme binding
AT03_RS09805	COG1560	Kdo2-lipid A biosynthetic process
AT03_RS09810	COG0469	pyruvate kinase activity
AT03_RS09815	COG1737	Transcriptional regulator
AT03_RS09820	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AT03_RS09825	COG0363	glucosamine-6-phosphate deaminase activity
AT03_RS09830	COG0129	dihydroxy-acid dehydratase activity
AT03_RS09835	COG0800	Aldolase
AT03_RS09840	COG2076	Multidrug Resistance protein
AT03_RS09845	COG2076	Multidrug Resistance protein
AT03_RS09850	COG0251	oxidation-reduction process
AT03_RS09860	COG1199	ATP-dependent helicase activity
AT03_RS09870	COG3065	identical protein binding
AT03_RS09875	COG1187	pseudouridine synthase activity
AT03_RS09880	COG0318	PFAM AMP-dependent synthetase and ligase
AT03_RS09885	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
AT03_RS09890	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AT03_RS09895	COG2894	cell division
AT03_RS09900	COG0850	regulation of cytokinetic process
AT03_RS09910	COG0179	Fumarylacetoacetate (FAA) hydrolase
AT03_RS09925	COG3133	Outer membrane lipoprotein
AT03_RS09940	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AT03_RS09960	COG2719	SpoVR family
AT03_RS09965	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT03_RS09970	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AT03_RS09975	COG2814	Major facilitator Superfamily
AT03_RS09990	COG5645	(Lipo)protein
AT03_RS10000	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AT03_RS10005	COG4178	(ABC) transporter
AT03_RS10010	COG2718	Belongs to the UPF0229 family
AT03_RS10015	COG2766	serine protein kinase
AT03_RS10020	COG3713	MltA-interacting MipA family protein
AT03_RS10025	COG0676	glucose-6-phosphate 1-epimerase activity
AT03_RS10035	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AT03_RS10040	COG3139	Protein of unknown function (DUF1315)
AT03_RS10045	COG1335	isochorismatase
AT03_RS10050	COG0252	asparaginase activity
AT03_RS10055	COG0616	signal peptide processing
AT03_RS10060	COG0778	Nitroreductase
AT03_RS10070	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
AT03_RS10075	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AT03_RS10085	COG0494	nUDIX hydrolase
AT03_RS10090	COG0708	Exodeoxyribonuclease III
AT03_RS10110	COG0788	formyltetrahydrofolate deformylase activity
AT03_RS10115	COG3012	SEC-C Motif Domain Protein
AT03_RS10120	COG0745	RESPONSE REGULATOR receiver
AT03_RS10125	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AT03_RS10140	COG1454	alcohol dehydrogenase
AT03_RS10140	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS10145	COG2095	MarC family integral membrane protein
AT03_RS10160	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AT03_RS10165	COG0444	Belongs to the ABC transporter superfamily
AT03_RS10175	COG0537	adenosine 5'-monophosphoramidase activity
AT03_RS10180	COG5633	Lipoprotein
AT03_RS10185	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
AT03_RS10200	COG3150	esterase
AT03_RS10215	COG0531	amino acid
AT03_RS10220	COG1595	DNA-templated transcription, initiation
AT03_RS10225	COG3712	iron ion homeostasis
AT03_RS10230	COG4772	TonB-dependent receptor
AT03_RS10235	COG1177	transmembrane transport
AT03_RS10255	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AT03_RS10260	COG2249	NAD(P)H dehydrogenase (quinone) activity
AT03_RS10265	COG0656	L-ascorbic acid biosynthetic process
AT03_RS10290	COG4172	Belongs to the ABC transporter superfamily
AT03_RS10295	COG4172	Belongs to the ABC transporter superfamily
AT03_RS10300	COG4171	peptide transport system, permease
AT03_RS10310	COG4166	transmembrane transport
AT03_RS10315	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
AT03_RS10320	COG1842	Phage shock protein A
AT03_RS10330	COG1983	PspC domain protein
AT03_RS10340	COG3106	COG3106 Predicted ATPase
AT03_RS10345	COG3768	UPF0283 membrane protein
AT03_RS10350	COG2897	thiosulfate sulfurtransferase activity
AT03_RS10365	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
AT03_RS10370	COG4948	Mandelate Racemase Muconate Lactonizing
AT03_RS10375	COG2866	Carboxypeptidase
AT03_RS10380	COG4166	transmembrane transport
AT03_RS10385	COG0741	lytic transglycosylase activity
AT03_RS10390	COG1376	ErfK ybiS ycfS ynhG family protein
AT03_RS10390	COG1388	LysM domain
AT03_RS10420	COG0534	Mate efflux family protein
AT03_RS10425	COG0307	riboflavin synthase, alpha
AT03_RS10445	COG2814	Major facilitator Superfamily
AT03_RS10455	COG1823	symporter activity
AT03_RS10460	COG1988	membrane-bound metal-dependent
AT03_RS10465	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AT03_RS10480	COG3001	Fructosamine kinase
AT03_RS10495	COG0814	amino acid
AT03_RS10500	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AT03_RS10505	COG1124	(ABC) transporter
AT03_RS10515	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AT03_RS10520	COG0601	transmembrane transport
AT03_RS10530	COG3152	Membrane
AT03_RS10545	COG3290	protein histidine kinase activity
AT03_RS10545	COG0840	transmembrane signaling receptor activity
AT03_RS10570	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AT03_RS10575	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AT03_RS10590	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AT03_RS10590	COG0072	phenylalanine-tRNA ligase activity
AT03_RS10595	COG0776	regulation of translation
AT03_RS10605	COG4139	cobalamin transport
AT03_RS10610	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
AT03_RS10615	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AT03_RS10620	COG0463	Glycosyl transferase, family 2
AT03_RS10625	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AT03_RS10625	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AT03_RS10630	COG0726	polysaccharide deacetylase
AT03_RS10635	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AT03_RS10645	COG2076	Multidrug Resistance protein
AT03_RS10655	COG0791	NLP P60 protein
AT03_RS10670	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AT03_RS10675	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AT03_RS10680	COG4558	Periplasmic binding protein
AT03_RS10685	COG3720	iron ion transport
AT03_RS10695	COG4256	Hemin uptake protein
AT03_RS10715	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AT03_RS10735	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AT03_RS10745	COG0574	Belongs to the PEP-utilizing enzyme family
AT03_RS10745	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AT03_RS10750	COG0628	permease
AT03_RS10755	COG0247	lactate metabolic process
AT03_RS10755	COG0277	FAD linked oxidase domain protein
AT03_RS10760	COG2050	protein possibly involved in aromatic compounds catabolism
AT03_RS10765	COG0598	Magnesium transport protein CorA
AT03_RS10785	COG0037	tRNA processing
AT03_RS10805	COG3153	acetyltransferase
AT03_RS10820	COG0251	oxidation-reduction process
AT03_RS10835	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AT03_RS10840	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS10840	COG0493	'glutamate synthase
AT03_RS10845	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
AT03_RS10845	COG0674	pyruvate-flavodoxin oxidoreductase activity
AT03_RS10845	COG1013	pyruvate-flavodoxin oxidoreductase activity
AT03_RS10845	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT03_RS10850	COG1285	pathogenesis
AT03_RS10855	COG3042	response to heat
AT03_RS10860	COG3187	Heat shock protein
AT03_RS10875	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AT03_RS10880	COG2911	Protein conserved in bacteria
AT03_RS10890	COG3784	Protein of unknown function (DUF1318)
AT03_RS10900	COG1643	Atp-dependent helicase
AT03_RS10905	COG3591	Belongs to the peptidase S1B family
AT03_RS10910	COG2226	methyltransferase
AT03_RS10915	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
AT03_RS10920	COG2205	protein histidine kinase activity
AT03_RS10925	COG0745	RESPONSE REGULATOR receiver
AT03_RS10930	COG1028	Short-chain dehydrogenase reductase Sdr
AT03_RS10940	COG0531	amino acid
AT03_RS10950	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AT03_RS10955	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AT03_RS10960	COG0589	response to stress
AT03_RS10975	COG2011	ABC-type metal ion transport system permease component
AT03_RS10980	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AT03_RS10985	COG1464	Belongs to the NlpA lipoprotein family
AT03_RS11015	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AT03_RS11025	COG0589	response to stress
AT03_RS11030	COG0659	secondary active sulfate transmembrane transporter activity
AT03_RS11040	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AT03_RS11045	COG1393	Belongs to the ArsC family
AT03_RS11050	COG0431	NADPH-dependent FMN reductase
AT03_RS11080	COG0826	peptidase U32
AT03_RS11090	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AT03_RS11105	COG2814	Major facilitator Superfamily
AT03_RS11115	COG3829	transcription factor binding
AT03_RS11125	COG0500	methyltransferase
AT03_RS11135	COG0697	spore germination
AT03_RS11140	COG1846	Transcriptional regulator
AT03_RS11145	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AT03_RS11170	COG4221	oxidoreductase activity
AT03_RS11185	COG2814	Major facilitator Superfamily
AT03_RS11190	COG1858	cytochrome C peroxidase
AT03_RS11200	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AT03_RS11205	COG1940	carbohydrate kinase activity
AT03_RS11210	COG0583	DNA-binding transcription factor activity
AT03_RS11215	COG2814	Major facilitator Superfamily
AT03_RS11225	COG0114	fumarate hydratase activity
AT03_RS11230	COG1482	cell wall glycoprotein biosynthetic process
AT03_RS11235	COG5339	Protein conserved in bacteria
AT03_RS11240	COG1609	Transcriptional regulator
AT03_RS11245	COG1263	PTS System
AT03_RS11245	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS11250	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
AT03_RS11270	COG0385	Bile acid
AT03_RS11275	COG0673	inositol 2-dehydrogenase activity
AT03_RS11290	COG1129	ABC transporter
AT03_RS11295	COG1879	ABC-type sugar transport system periplasmic component
AT03_RS11300	COG1069	ribulokinase activity
AT03_RS11315	COG0697	spore germination
AT03_RS11320	COG2759	Belongs to the formate--tetrahydrofolate ligase family
AT03_RS11330	COG4657	Part of a membrane complex involved in electron transport
AT03_RS11345	COG4658	electron transport chain
AT03_RS11350	COG4659	FMN binding
AT03_RS11360	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AT03_RS11365	COG3104	oligopeptide transport
AT03_RS11370	COG0625	glutathione transferase activity
AT03_RS11375	COG0583	DNA-binding transcription factor activity
AT03_RS11405	COG3895	Periplasmic Protein
AT03_RS11410	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AT03_RS11415	COG3133	Outer membrane lipoprotein
AT03_RS11430	COG1566	PFAM secretion protein HlyD family protein
AT03_RS11440	COG3313	Fe-S protein
AT03_RS11445	COG0583	DNA-binding transcription factor activity
AT03_RS11455	COG1902	pentaerythritol trinitrate reductase activity
AT03_RS11470	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AT03_RS11475	COG0791	NLP P60 protein
AT03_RS11490	COG4135	transport system, permease component
AT03_RS11495	COG4136	ATPase activity
AT03_RS11500	COG0583	DNA-binding transcription factor activity
AT03_RS11505	COG2814	Major facilitator Superfamily
AT03_RS11510	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AT03_RS11515	COG0501	Belongs to the peptidase M48B family
AT03_RS11520	COG0793	Belongs to the peptidase S41A family
AT03_RS11530	COG1956	GAF domain-containing protein
AT03_RS11535	COG2995	paraquat-inducible protein a
AT03_RS11540	COG3008	intermembrane lipid transfer
AT03_RS11560	COG1652	LysM domain
AT03_RS11595	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AT03_RS11690	COG4695	Portal protein
AT03_RS11755	COG4974	Belongs to the 'phage' integrase family
AT03_RS11765	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AT03_RS11770	COG3753	Protein conserved in bacteria
AT03_RS11790	COG1105	Belongs to the carbohydrate kinase PfkB family
AT03_RS11810	COG2372	response to copper ion
AT03_RS11820	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AT03_RS11830	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AT03_RS11835	COG2267	carboxylic ester hydrolase activity
AT03_RS11840	COG1770	oligopeptidase
AT03_RS11845	COG5001	Diguanylate cyclase
AT03_RS11845	COG2203	Gaf domain
AT03_RS11845	COG3706	GGDEF domain
AT03_RS11845	COG4251	negative regulation of phosphorylation
AT03_RS11855	COG3097	Belongs to the UPF0267 family
AT03_RS11860	COG3141	response to X-ray
AT03_RS11875	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AT03_RS11885	COG3140	Belongs to the UPF0181 family
AT03_RS11900	COG1760	l-serine dehydratase
AT03_RS11915	COG1446	asparaginase
AT03_RS11920	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
AT03_RS11930	COG1447	Phosphotransferase system cellobiose-specific component IIA
AT03_RS11935	COG2200	EAL domain
AT03_RS11940	COG1253	flavin adenine dinucleotide binding
AT03_RS11945	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS11945	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS11950	COG3715	PTS system
AT03_RS11955	COG3716	PTS system mannose fructose sorbose family IID component
AT03_RS11965	COG1971	Probably functions as a manganese efflux pump
AT03_RS11970	COG2226	methyltransferase
AT03_RS11975	COG1496	oxidoreductase activity
AT03_RS11990	COG0583	DNA-binding transcription factor activity
AT03_RS11995	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AT03_RS12005	COG0616	signal peptide processing
AT03_RS12010	COG1028	Short-chain dehydrogenase reductase Sdr
AT03_RS12020	COG0406	alpha-ribazole phosphatase activity
AT03_RS12030	COG1187	pseudouridine synthase activity
AT03_RS12050	COG1028	Short-chain dehydrogenase reductase Sdr
AT03_RS12055	COG2207	Transcriptional regulator
AT03_RS12060	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AT03_RS12065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT03_RS12070	COG0765	amino acid transport
AT03_RS12080	COG2211	Major facilitator Superfamily
AT03_RS12095	COG0009	L-threonylcarbamoyladenylate synthase
AT03_RS12110	COG0512	Glutamine amidotransferase of anthranilate synthase
AT03_RS12110	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AT03_RS12120	COG0134	indole-3-glycerol-phosphate synthase activity
AT03_RS12120	COG0135	phosphoribosylanthranilate isomerase activity
AT03_RS12125	COG0133	tryptophan synthase activity
AT03_RS12130	COG0159	tryptophan synthase activity
AT03_RS12140	COG3047	cAMP biosynthetic process
AT03_RS12145	COG0727	PFAM Uncharacterised protein family (UPF0153)
AT03_RS12165	COG1607	acyl-coa hydrolase
AT03_RS12175	COG2350	Protein conserved in bacteria
AT03_RS12180	COG0783	Belongs to the Dps family
AT03_RS12190	COG3099	Belongs to the UPF0263 family
AT03_RS12195	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AT03_RS12200	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AT03_RS12205	COG3678	ATP-independent chaperone mediated protein folding
AT03_RS12215	COG1028	Short-chain dehydrogenase reductase Sdr
AT03_RS12225	COG1120	ATPase activity
AT03_RS12230	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AT03_RS12235	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AT03_RS12255	COG1683	Conserved Protein
AT03_RS12260	COG2259	Doxx family
AT03_RS12270	COG2116	formate transmembrane transporter activity
AT03_RS12280	COG0477	Major facilitator Superfamily
AT03_RS12285	COG2885	chlorophyll binding
AT03_RS12300	COG2207	Transcriptional regulator
AT03_RS12320	COG0583	DNA-binding transcription factor activity
AT03_RS12325	COG0840	transmembrane signaling receptor activity
AT03_RS12330	COG0456	acetyltransferase
AT03_RS12340	COG0583	DNA-binding transcription factor activity
AT03_RS12360	COG3916	Acyl-homoserine-lactone synthase
AT03_RS12370	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AT03_RS12390	COG0519	Catalyzes the synthesis of GMP from XMP
AT03_RS12400	COG3122	Protein conserved in bacteria
AT03_RS12405	COG1278	Cold shock
AT03_RS12415	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AT03_RS12425	COG2207	Transcriptional regulator
AT03_RS12445	COG2153	protein acetylation
AT03_RS12455	COG0322	excinuclease ABC activity
AT03_RS12460	COG0538	isocitrate dehydrogenase activity
AT03_RS12465	COG1187	pseudouridine synthase activity
AT03_RS12475	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS12480	COG0651	ATP synthesis coupled electron transport
AT03_RS12485	COG0650	Formate hydrogenlyase subunit 4
AT03_RS12490	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AT03_RS12495	COG4237	Hydrogenase 4 membrane
AT03_RS12500	COG0651	ATP synthesis coupled electron transport
AT03_RS12505	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
AT03_RS12505	COG3261	NADH dehydrogenase
AT03_RS12510	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT03_RS12515	COG3260	NADH ubiquinone oxidoreductase 20
AT03_RS12525	COG3604	Transcriptional regulator
AT03_RS12530	COG2116	formate transmembrane transporter activity
AT03_RS12540	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AT03_RS12545	COG1595	DNA-templated transcription, initiation
AT03_RS12570	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AT03_RS12575	COG2188	Transcriptional regulator
AT03_RS12590	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AT03_RS12595	COG1397	ADP-ribosylglycohydrolase
AT03_RS12600	COG2211	Major facilitator Superfamily
AT03_RS12650	COG0745	RESPONSE REGULATOR receiver
AT03_RS12660	COG2850	peptidyl-arginine hydroxylation
AT03_RS12665	COG3969	phosphoadenosine phosphosulfate
AT03_RS12670	COG1475	DNA binding
AT03_RS12680	COG1940	carbohydrate kinase activity
AT03_RS12685	COG4591	ABC-type transport system involved in lipoprotein release permease component
AT03_RS12695	COG4591	ABC-type transport system involved in lipoprotein release permease component
AT03_RS12700	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AT03_RS12710	COG3134	Outer membrane lipoprotein
AT03_RS12715	COG1252	NADH dehydrogenase
AT03_RS12720	COG1966	Carbon starvation protein
AT03_RS12725	COG2879	small protein
AT03_RS12740	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AT03_RS12745	COG1882	Formate acetyltransferase
AT03_RS12750	COG1349	DNA-binding transcription factor activity
AT03_RS12760	COG3700	Belongs to the class B bacterial acid phosphatase family
AT03_RS12770	COG1275	C4-dicarboxylate transporter malic acid transport protein
AT03_RS12795	COG0477	Major facilitator Superfamily
AT03_RS12800	COG0628	permease
AT03_RS12810	COG1054	Belongs to the UPF0176 family
AT03_RS12815	COG1396	sequence-specific DNA binding
AT03_RS12820	COG0697	spore germination
AT03_RS12825	COG0583	DNA-binding transcription factor activity
AT03_RS12835	COG2259	Doxx family
AT03_RS12845	COG0586	Pfam SNARE associated Golgi protein
AT03_RS12855	COG2814	Major facilitator Superfamily
AT03_RS12860	COG3739	integral membrane protein
AT03_RS12865	COG2610	gluconate transmembrane transporter activity
AT03_RS12870	COG3265	gluconokinase activity
AT03_RS12875	COG0235	Class ii aldolase
AT03_RS12885	COG0023	Translation Initiation Factor
AT03_RS12895	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AT03_RS12900	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
AT03_RS12905	COG0671	phosphoesterase, PA-phosphatase related
AT03_RS12915	COG1263	PTS System
AT03_RS12915	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS12920	COG0084	hydrolase, TatD family'
AT03_RS12925	COG0470	DNA polymerase III
AT03_RS12935	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AT03_RS12940	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AT03_RS12945	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AT03_RS12960	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AT03_RS12970	COG0416	fatty acid biosynthetic process
AT03_RS12980	COG1399	metal-binding, possibly nucleic acid-binding protein
AT03_RS12985	COG0424	maF-like protein
AT03_RS12990	COG0564	pseudouridine synthase activity
AT03_RS12995	COG1530	ribonuclease E activity
AT03_RS12995	COG1530	ribonuclease E activity
AT03_RS13000	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AT03_RS13010	COG4619	ABC transporter
AT03_RS13015	COG0390	transport system, permease component
AT03_RS13020	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AT03_RS13020	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AT03_RS13025	COG0371	Dehydrogenase
AT03_RS13080	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AT03_RS13080	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AT03_RS13080	COG0506	proline dehydrogenase activity
AT03_RS13085	COG1126	abc transporter atp-binding protein
AT03_RS13105	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AT03_RS13145	COG3615	Tellurite resistance protein tehB
AT03_RS13155	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AT03_RS13160	COG2246	polysaccharide biosynthetic process
AT03_RS13300	COG1783	phage Terminase large subunit
AT03_RS13325	COG3772	lysozyme
AT03_RS13345	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
AT03_RS13385	COG0305	Participates in initiation and elongation during chromosome replication
AT03_RS13500	COG0582	viral genome integration into host DNA
AT03_RS13515	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AT03_RS13530	COG2882	bacterial-type flagellum organization
AT03_RS13560	COG1338	Plays a role in the flagellum-specific transport system
AT03_RS13575	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AT03_RS13580	COG1256	bacterial-type flagellum assembly
AT03_RS13620	COG1558	bacterial-type flagellum-dependent cell motility
AT03_RS13625	COG1815	bacterial-type flagellum-dependent cell motility
AT03_RS13635	COG2747	anti-sigma28 factor FlgM
AT03_RS13640	COG3418	PFAM FlgN family protein
AT03_RS13645	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
AT03_RS13645	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
AT03_RS13655	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AT03_RS13660	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AT03_RS13665	COG3615	Tellurite resistance protein tehB
AT03_RS13690	COG0672	)-iron permease
AT03_RS13700	COG2194	sulfuric ester hydrolase activity
AT03_RS13705	COG2200	EAL domain
AT03_RS13705	COG2199	diguanylate cyclase activity
AT03_RS13715	COG1122	ATPase activity
AT03_RS13725	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AT03_RS13760	COG0456	acetyltransferase
AT03_RS13775	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AT03_RS13780	COG0156	8-amino-7-oxononanoate synthase activity
AT03_RS13790	COG0795	lipopolysaccharide-transporting ATPase activity
AT03_RS13795	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
AT03_RS13805	COG2244	polysaccharide biosynthetic process
AT03_RS13810	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AT03_RS13815	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AT03_RS13820	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AT03_RS13825	COG0306	phosphate transporter
AT03_RS13830	COG1609	Transcriptional regulator
AT03_RS13835	COG1397	ADP-ribosylglycohydrolase
AT03_RS13840	COG3069	C4-dicarboxylate transmembrane transporter activity
AT03_RS13855	COG3209	COG3209 Rhs family protein
AT03_RS13865	COG3209	COG3209 Rhs family protein
AT03_RS13890	COG2207	Transcriptional regulator
AT03_RS13945	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AT03_RS13965	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AT03_RS13970	COG1253	flavin adenine dinucleotide binding
AT03_RS13975	COG3069	C4-dicarboxylate transmembrane transporter activity
AT03_RS13980	COG2982	Protein involved in outer membrane biogenesis
AT03_RS13995	COG0489	protein tyrosine kinase activity
AT03_RS14000	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AT03_RS14000	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AT03_RS14005	COG4771	TonB-dependent receptor
AT03_RS14015	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AT03_RS14025	COG0833	amino acid
AT03_RS14030	COG0583	DNA-binding transcription factor activity
AT03_RS14040	COG2855	membrane
AT03_RS14045	COG2855	membrane
AT03_RS14050	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
AT03_RS14055	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AT03_RS14055	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
AT03_RS14055	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AT03_RS14060	COG1105	Belongs to the carbohydrate kinase PfkB family
AT03_RS14065	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS14065	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS14075	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT03_RS14080	COG0765	amino acid transport
AT03_RS14085	COG1126	abc transporter atp-binding protein
AT03_RS14095	COG1473	amidohydrolase
AT03_RS14100	COG2207	Transcriptional regulator
AT03_RS14105	COG0668	transmembrane transport
AT03_RS14115	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AT03_RS14120	COG2200	EAL domain
AT03_RS14125	COG4166	transmembrane transport
AT03_RS14130	COG4174	ABC transporter (Permease)
AT03_RS14135	COG4239	(ABC) transporter, permease
AT03_RS14140	COG4172	Belongs to the ABC transporter superfamily
AT03_RS14150	COG2814	Major facilitator Superfamily
AT03_RS14155	COG1187	pseudouridine synthase activity
AT03_RS14165	COG1061	Type III restriction enzyme res subunit
AT03_RS14170	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AT03_RS14180	COG3082	Protein of unknown function (DUF1414)
AT03_RS14205	COG3188	usher protein
AT03_RS14220	COG3121	Chaperone
AT03_RS14225	COG3539	Fimbrial protein
AT03_RS14235	COG3188	usher protein
AT03_RS14255	COG3121	Chaperone
AT03_RS14265	COG5001	Diguanylate cyclase
AT03_RS14265	COG2203	Gaf domain
AT03_RS14265	COG3706	GGDEF domain
AT03_RS14265	COG4251	negative regulation of phosphorylation
AT03_RS14270	COG0513	Belongs to the DEAD box helicase family
AT03_RS14280	COG2274	protein secretion by the type I secretion system
AT03_RS14295	COG1309	transcriptional regulator
AT03_RS14300	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT03_RS14305	COG1131	(ABC) transporter
AT03_RS14310	COG0842	Transport permease protein
AT03_RS14315	COG0842	Transport permease protein
AT03_RS14320	COG2198	Histidine kinase
AT03_RS14320	COG0642	Histidine kinase
AT03_RS14325	COG2197	response regulator
AT03_RS14330	COG2205	protein histidine kinase activity
AT03_RS14330	COG0784	Response regulator, receiver
AT03_RS14340	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AT03_RS14345	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AT03_RS14355	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AT03_RS14365	COG0601	transmembrane transport
AT03_RS14370	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AT03_RS14375	COG0444	Belongs to the ABC transporter superfamily
AT03_RS14380	COG4608	Belongs to the ABC transporter superfamily
AT03_RS14385	COG0670	Belongs to the BI1 family
AT03_RS14415	COG1203	CRISPR-associated helicase, Cas3
AT03_RS14420	COG1518	maintenance of DNA repeat elements
AT03_RS14425	COG0314	molybdopterin synthase activity
AT03_RS14430	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AT03_RS14440	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AT03_RS14445	COG0391	Required for morphogenesis under gluconeogenic growth conditions
AT03_RS14455	COG0814	amino acid
AT03_RS14490	COG3539	Fimbrial protein
AT03_RS14495	COG3539	Fimbrial protein
AT03_RS14500	COG0318	PFAM AMP-dependent synthetase and ligase
AT03_RS14505	COG1441	menaquinone biosynthetic process
AT03_RS14510	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
AT03_RS14520	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
AT03_RS14525	COG1169	isochorismate synthase
AT03_RS14540	COG0583	DNA-binding transcription factor activity
AT03_RS14545	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AT03_RS14550	COG1335	isochorismatase
AT03_RS14560	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AT03_RS14565	COG1304	FMN binding
AT03_RS14570	COG0549	Belongs to the carbamate kinase family
AT03_RS14580	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AT03_RS14585	COG0583	DNA-binding transcription factor activity
AT03_RS14590	COG1773	rubredoxin
AT03_RS14595	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
AT03_RS14600	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
AT03_RS14605	COG5557	Pfam Polysulphide reductase, NrfD
AT03_RS14610	COG0437	4 iron, 4 sulfur cluster binding
AT03_RS14615	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
AT03_RS14625	COG2271	Major facilitator Superfamily
AT03_RS14630	COG1609	Transcriptional regulator
AT03_RS14635	COG1472	Belongs to the glycosyl hydrolase 3 family
AT03_RS14640	COG4166	transmembrane transport
AT03_RS14670	COG1007	ATP synthesis coupled electron transport
AT03_RS14675	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT03_RS14680	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AT03_RS14690	COG0839	Belongs to the complex I subunit 6 family
AT03_RS14700	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
AT03_RS14710	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AT03_RS14715	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
AT03_RS14720	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AT03_RS14720	COG0649	NAD binding
AT03_RS14735	COG0583	DNA-binding transcription factor activity
AT03_RS14740	COG0398	Pfam SNARE associated Golgi protein
AT03_RS14745	COG2897	thiosulfate sulfurtransferase activity
AT03_RS14750	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AT03_RS14755	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AT03_RS14760	COG0436	Aminotransferase
AT03_RS14765	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
AT03_RS14770	COG0490	domain, Protein
AT03_RS14770	COG0471	metal ion transport
AT03_RS14775	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AT03_RS14785	COG3092	negative regulation of chromosome organization
AT03_RS14790	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AT03_RS14795	COG0857	belongs to the CobB CobQ family
AT03_RS14795	COG0280	phosphate acetyltransferase
AT03_RS14805	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AT03_RS14810	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AT03_RS14815	COG3037	sugar-specific permease SgaT UlaA
AT03_RS14825	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS14830	COG1609	Transcriptional regulator
AT03_RS14835	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
AT03_RS14840	COG0622	Phosphoesterase
AT03_RS14845	COG0625	glutathione transferase activity
AT03_RS14850	COG0625	glutathione transferase activity
AT03_RS14855	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AT03_RS14860	COG1090	epimerase
AT03_RS14865	COG4598	ABC transporter
AT03_RS14870	COG4160	amino acid transport
AT03_RS14880	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT03_RS14885	COG0163	prenyltransferase activity
AT03_RS14895	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AT03_RS14900	COG1286	toxin biosynthetic process
AT03_RS14905	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
AT03_RS14910	COG0285	dihydrofolate synthase activity
AT03_RS14915	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AT03_RS14920	COG0586	Pfam SNARE associated Golgi protein
AT03_RS14925	COG0101	tRNA pseudouridine synthase activity
AT03_RS14930	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AT03_RS14935	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AT03_RS14945	COG0697	spore germination
AT03_RS14950	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AT03_RS14960	COG4232	protein-disulfide reductase activity
AT03_RS14990	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AT03_RS14995	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AT03_RS14995	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AT03_RS15005	COG3101	peptidyl-lysine hydroxylation
AT03_RS15010	COG0730	response to heat
AT03_RS15020	COG0583	DNA-binding transcription factor activity
AT03_RS15025	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AT03_RS15030	COG0700	Nucleoside recognition
AT03_RS15035	COG3366	ferrous iron transmembrane transporter activity
AT03_RS15045	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AT03_RS15050	COG2890	protein-(glutamine-N5) methyltransferase activity
AT03_RS15055	COG2840	Smr protein MutS2
AT03_RS15060	COG2062	phosphohistidine phosphatase, SixA
AT03_RS15065	COG1024	Enoyl-CoA hydratase
AT03_RS15065	COG1250	3-hydroxyacyl-CoA dehydrogenase
AT03_RS15070	COG0183	Belongs to the thiolase family
AT03_RS15075	COG3691	Protein conserved in bacteria
AT03_RS15090	COG4235	cytochrome complex assembly
AT03_RS15090	COG3088	subunit of a heme lyase
AT03_RS15095	COG3088	subunit of a heme lyase
AT03_RS15095	COG4235	cytochrome complex assembly
AT03_RS15100	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AT03_RS15105	COG1138	Cytochrome C-type biogenesis protein
AT03_RS15110	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AT03_RS15115	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AT03_RS15120	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AT03_RS15125	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AT03_RS15140	COG0582	viral genome integration into host DNA
AT03_RS15255	COG4695	Portal protein
AT03_RS15265	COG1802	Transcriptional regulator
AT03_RS15265	COG4626	Terminase
AT03_RS15300	COG3179	chitinase
AT03_RS15440	COG3188	usher protein
AT03_RS15445	COG3121	Chaperone
AT03_RS15470	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AT03_RS15475	COG0640	Transcriptional regulator
AT03_RS15490	COG4932	domain protein
AT03_RS15490	COG2373	Large extracellular alpha-helical protein
AT03_RS15490	COG1388	LysM domain
AT03_RS15525	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS15525	COG1263	PTS System
AT03_RS15530	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AT03_RS15535	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AT03_RS15540	COG0698	ribose 5-phosphate isomerase
AT03_RS15545	COG1263	PTS System
AT03_RS15545	COG2190	(PTS) system
AT03_RS15545	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS15550	COG1737	Transcriptional regulator
AT03_RS15565	COG4574	serine-type endopeptidase inhibitor activity
AT03_RS15570	COG0488	(ABC) transporter
AT03_RS15575	COG1574	metal-dependent hydrolase with the TIM-barrel fold
AT03_RS15585	COG1335	isochorismatase
AT03_RS15590	COG0583	DNA-binding transcription factor activity
AT03_RS15595	COG0583	DNA-binding transcription factor activity
AT03_RS15600	COG1028	Short-chain dehydrogenase reductase Sdr
AT03_RS15605	COG0840	transmembrane signaling receptor activity
AT03_RS15610	COG2354	Protein conserved in bacteria
AT03_RS15615	COG1686	Belongs to the peptidase S11 family
AT03_RS15620	COG4106	trans-aconitate 2-methyltransferase activity
AT03_RS15630	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AT03_RS15635	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AT03_RS15640	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AT03_RS15650	COG2249	NAD(P)H dehydrogenase (quinone) activity
AT03_RS15655	COG4628	conserved protein (DUF2132)
AT03_RS15660	COG0556	nucleotide-excision repair
AT03_RS15680	COG2226	methyltransferase
AT03_RS15705	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AT03_RS15710	COG0561	phosphatase activity
AT03_RS15720	COG4149	molybdate abc transporter
AT03_RS15725	COG0725	ABC transporter, periplasmic molybdate-binding protein
AT03_RS15735	COG3585	molybdate ion transport
AT03_RS15735	COG2005	Transcriptional regulator
AT03_RS15740	COG1119	ATPase activity
AT03_RS15750	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AT03_RS15760	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AT03_RS15765	COG2017	converts alpha-aldose to the beta-anomer
AT03_RS15770	COG3005	denitrification pathway
AT03_RS15775	COG3043	anaerobic respiration
AT03_RS15780	COG0348	domain, Protein
AT03_RS15785	COG0437	4 iron, 4 sulfur cluster binding
AT03_RS15795	COG3062	negative regulation of establishment of protein localization
AT03_RS15800	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS15800	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS15805	COG3850	Histidine kinase
AT03_RS15810	COG2197	response regulator
AT03_RS15825	COG3121	Chaperone
AT03_RS15830	COG3188	usher protein
AT03_RS15835	COG3539	Fimbrial protein
AT03_RS15840	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT03_RS15845	COG1393	Belongs to the ArsC family
AT03_RS15850	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AT03_RS15855	COG1876	peptidase activity
AT03_RS15865	COG0400	carboxylic ester hydrolase activity
AT03_RS15870	COG3468	outer membrane autotransporter barrel domain protein
AT03_RS15880	COG2321	neutral zinc metallopeptidase
AT03_RS15885	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AT03_RS15890	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
AT03_RS15895	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AT03_RS15900	COG2716	regulation of RNA biosynthetic process
AT03_RS15905	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AT03_RS15910	COG0628	permease
AT03_RS15915	COG4783	chaperone-mediated protein folding
AT03_RS15920	COG1393	Belongs to the ArsC family
AT03_RS15940	COG0280	phosphate acetyltransferase
AT03_RS15940	COG0281	malic enzyme
AT03_RS15945	COG0494	nUDIX hydrolase
AT03_RS15950	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AT03_RS15955	COG2233	PERMEase
AT03_RS15960	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AT03_RS15965	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AT03_RS15970	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AT03_RS15975	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AT03_RS15985	COG0573	inorganic phosphate transmembrane transporter activity
AT03_RS15990	COG0573	inorganic phosphate transmembrane transporter activity
AT03_RS15995	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AT03_RS16010	COG5002	protein histidine kinase activity
AT03_RS16015	COG0745	RESPONSE REGULATOR receiver
AT03_RS16020	COG0420	3'-5' exonuclease activity
AT03_RS16025	COG0419	ATPase involved in DNA repair
AT03_RS16030	COG2207	Transcriptional regulator
AT03_RS16040	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AT03_RS16045	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AT03_RS16050	COG0006	proline dipeptidase activity
AT03_RS16055	COG1363	Peptidase, m42
AT03_RS16060	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AT03_RS16060	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS16060	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS16065	COG2207	Transcriptional regulator
AT03_RS16070	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
AT03_RS16080	COG1940	carbohydrate kinase activity
AT03_RS16085	COG2974	May be involved in recombination
AT03_RS16105	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT03_RS16110	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT03_RS16115	COG2814	Major facilitator Superfamily
AT03_RS16120	COG2205	protein histidine kinase activity
AT03_RS16125	COG0745	RESPONSE REGULATOR receiver
AT03_RS16130	COG3422	double-strand break repair
AT03_RS16135	COG0826	peptidase U32
AT03_RS16140	COG1597	lipid kinase activity
AT03_RS16145	COG4948	Mandelate Racemase Muconate Lactonizing
AT03_RS16150	COG1063	alcohol dehydrogenase
AT03_RS16155	COG2271	Major facilitator Superfamily
AT03_RS16160	COG0246	Mannitol dehydrogenase
AT03_RS16165	COG1802	Transcriptional regulator
AT03_RS16170	COG1830	Aldolase
AT03_RS16175	COG0583	DNA-binding transcription factor activity
AT03_RS16180	COG2181	nitrate reductase activity
AT03_RS16185	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
AT03_RS16190	COG1140	nitrate reductase beta subunit
AT03_RS16195	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
AT03_RS16205	COG2223	nitrite transmembrane transporter activity
AT03_RS16210	COG3850	Histidine kinase
AT03_RS16215	COG2197	response regulator
AT03_RS16220	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AT03_RS16255	COG0351	phosphomethylpyrimidine kinase
AT03_RS16260	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
AT03_RS16265	COG0277	FAD linked oxidase domain protein
AT03_RS16275	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AT03_RS16280	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AT03_RS16285	COG0720	synthase
AT03_RS16295	COG0436	Aminotransferase
AT03_RS16300	COG2814	Major facilitator Superfamily
AT03_RS16305	COG2134	cdp-diacylglycerol pyrophosphatase
AT03_RS16310	COG0602	queuosine metabolic process
AT03_RS16315	COG1228	amidohydrolase
AT03_RS16320	COG0010	Belongs to the arginase family
AT03_RS16335	COG0330	HflC and HflK could
AT03_RS16340	COG1585	Membrane protein implicated in regulation of membrane protease activity
AT03_RS16345	COG0789	Transcriptional regulator
AT03_RS16350	COG2217	Heavy metal translocating P-type atpase
AT03_RS16355	COG3735	TraB family
AT03_RS16370	COG1278	Cold shock
AT03_RS16375	COG0737	Belongs to the 5'-nucleotidase family
AT03_RS16380	COG2223	nitrite transmembrane transporter activity
AT03_RS16385	COG4651	solute:proton antiporter activity
AT03_RS16385	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AT03_RS16390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AT03_RS16395	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AT03_RS16400	COG0563	adenylate kinase activity
AT03_RS16405	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
AT03_RS16425	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AT03_RS16435	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AT03_RS16440	COG2832	Protein of unknown function (DUF454)
AT03_RS16450	COG2261	transglycosylase associated protein
AT03_RS16460	COG3706	GGDEF domain
AT03_RS16465	COG3264	Mechanosensitive ion channel
AT03_RS16465	COG1196	nuclear chromosome segregation
AT03_RS16470	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AT03_RS16475	COG1309	transcriptional regulator
AT03_RS16480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT03_RS16485	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AT03_RS16490	COG0254	rRNA binding
AT03_RS16510	COG3695	enzyme binding
AT03_RS16515	COG3126	Type III secretion system lipoprotein chaperone (YscW)
AT03_RS16520	COG1946	Acyl-CoA thioesterase
AT03_RS16525	COG0004	ammonium transporteR
AT03_RS16530	COG0347	Belongs to the P(II) protein family
AT03_RS16535	COG1132	(ABC) transporter
AT03_RS16540	COG1132	(ABC) transporter
AT03_RS16545	COG1522	sequence-specific DNA binding
AT03_RS16555	COG0561	phosphatase activity
AT03_RS16560	COG4533	DNA binding
AT03_RS16570	COG0824	Thioesterase
AT03_RS16575	COG1555	photosystem II stabilization
AT03_RS16580	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AT03_RS16585	COG0776	regulation of translation
AT03_RS16590	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AT03_RS16595	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AT03_RS16600	COG0740	serine-type endopeptidase activity
AT03_RS16605	COG0544	peptidyl-prolyl cis-trans isomerase activity
AT03_RS16610	COG0271	Belongs to the BolA IbaG family
AT03_RS16615	COG3056	Lipoprotein
AT03_RS16620	COG2223	nitrite transmembrane transporter activity
AT03_RS16625	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AT03_RS16630	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AT03_RS16635	COG1845	cytochrome c oxidase, subunit III
AT03_RS16640	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AT03_RS16645	COG0109	protoheme IX farnesyltransferase activity
AT03_RS16650	COG2814	Major facilitator Superfamily
AT03_RS16660	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AT03_RS16665	COG0693	protein deglycase activity
AT03_RS16680	COG0142	geranyltranstransferase activity
AT03_RS16685	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AT03_RS16695	COG0251	oxidation-reduction process
AT03_RS16700	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AT03_RS16705	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AT03_RS16720	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AT03_RS16720	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AT03_RS16735	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AT03_RS16745	COG1862	Preprotein translocase
AT03_RS16750	COG0343	queuine tRNA-ribosyltransferase activity
AT03_RS16760	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
AT03_RS16765	COG0450	alkyl hydroperoxide reductase
AT03_RS16780	COG2204	response regulator
AT03_RS16785	COG0366	Alpha amylase catalytic
AT03_RS16790	COG0668	transmembrane transport
AT03_RS16800	COG1113	amino acid transport
AT03_RS16810	COG2200	EAL domain
AT03_RS16820	COG2239	Acts as a magnesium transporter
AT03_RS16825	COG3447	MASE1 domain protein
AT03_RS16825	COG5001	Diguanylate cyclase
AT03_RS16825	COG5002	protein histidine kinase activity
AT03_RS16830	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AT03_RS16835	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AT03_RS16840	COG0443	Heat shock 70 kDa protein
AT03_RS16850	COG0531	amino acid
AT03_RS16855	COG0454	-acetyltransferase
AT03_RS16880	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AT03_RS16885	COG1011	Hydrolase
AT03_RS16890	COG1560	Kdo2-lipid A biosynthetic process
AT03_RS16895	COG1278	Cold shock
AT03_RS16905	COG1846	Transcriptional regulator
AT03_RS16910	COG0179	Fumarylacetoacetate (FAA) hydrolase
AT03_RS16920	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS16925	COG3384	dioxygenase
AT03_RS16940	COG3971	2-oxopent-4-enoate hydratase activity
AT03_RS16960	COG2368	4-hydroxyphenylacetate
AT03_RS16965	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AT03_RS16975	COG0811	peptide transport
AT03_RS16980	COG0848	biopolymer transport protein
AT03_RS16995	COG1770	oligopeptidase
AT03_RS17005	COG1742	UPF0060 membrane protein
AT03_RS17010	COG1263	PTS System
AT03_RS17010	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS17015	COG1486	melibiose metabolic process
AT03_RS17035	COG1064	alcohol dehydrogenase
AT03_RS17040	COG1393	Belongs to the ArsC family
AT03_RS17045	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AT03_RS17105	COG3596	GTP binding
AT03_RS17145	COG0582	viral genome integration into host DNA
AT03_RS17155	COG2130	NADP-dependent
AT03_RS17160	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AT03_RS17165	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AT03_RS17175	COG1073	alpha beta
AT03_RS17185	COG2195	Cleaves the N-terminal amino acid of tripeptides
AT03_RS17190	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AT03_RS17195	COG2991	Protein conserved in bacteria
AT03_RS17200	COG1477	protein flavinylation
AT03_RS17205	COG2871	sodium ion transport
AT03_RS17210	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AT03_RS17215	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AT03_RS17220	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AT03_RS17225	COG1805	sodium ion transport
AT03_RS17235	COG3034	peptidoglycan biosynthetic process
AT03_RS17240	COG0121	glutamine amidotransferase
AT03_RS17245	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AT03_RS17260	COG0347	Belongs to the P(II) protein family
AT03_RS17265	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AT03_RS17265	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AT03_RS17270	COG2204	response regulator
AT03_RS17275	COG3170	Tfp pilus assembly protein FimV
AT03_RS17280	COG2205	protein histidine kinase activity
AT03_RS17300	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AT03_RS17310	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AT03_RS17315	COG1454	alcohol dehydrogenase
AT03_RS17320	COG0560	Phosphoserine phosphatase
AT03_RS17325	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS17330	COG3015	lipoprotein NlpE involved in copper resistance
AT03_RS17340	COG4681	YaeQ
AT03_RS17350	COG4568	rho-dependent transcription termination
AT03_RS17370	COG1982	Orn Lys Arg decarboxylase major
AT03_RS17375	COG0531	amino acid
AT03_RS17380	COG3710	Transcriptional regulator
AT03_RS17385	COG0346	lactoylglutathione lyase activity
AT03_RS17405	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AT03_RS17415	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AT03_RS17420	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AT03_RS17425	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
AT03_RS17435	COG0750	zinc metalloprotease
AT03_RS17440	COG0575	Belongs to the CDS family
AT03_RS17445	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AT03_RS17460	COG0528	UMP kinase activity
AT03_RS17480	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
AT03_RS17500	COG0564	pseudouridine synthase activity
AT03_RS17505	COG3098	single-species biofilm formation
AT03_RS17520	COG1611	Belongs to the LOG family
AT03_RS17525	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AT03_RS17535	COG2363	Small membrane protein
AT03_RS17540	COG0583	DNA-binding transcription factor activity
AT03_RS17550	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AT03_RS17555	COG2166	iron-sulfur cluster assembly
AT03_RS17560	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AT03_RS17565	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
AT03_RS17585	COG0860	N-Acetylmuramoyl-L-alanine amidase
AT03_RS17590	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AT03_RS17590	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AT03_RS17595	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AT03_RS17600	COG1074	ATP-dependent DNA helicase activity
AT03_RS17610	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AT03_RS17640	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AT03_RS17660	COG2895	sulfate adenylyltransferase (ATP) activity
AT03_RS17670	COG2234	aminopeptidase activity
AT03_RS17680	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AT03_RS17685	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AT03_RS17690	COG1120	ATPase activity
AT03_RS17695	COG4774	siderophore transport
AT03_RS17700	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AT03_RS17705	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AT03_RS17710	COG1643	Atp-dependent helicase
AT03_RS17715	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
AT03_RS17735	COG0617	tRNA 3'-terminal CCA addition
AT03_RS17740	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AT03_RS17755	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AT03_RS17760	COG0726	polysaccharide deacetylase
AT03_RS17775	COG3716	PTS system mannose fructose sorbose family IID component
AT03_RS17780	COG3715	PTS system
AT03_RS17785	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS17790	COG2222	sugar isomerase
AT03_RS17800	COG1349	DNA-binding transcription factor activity
AT03_RS17805	COG4807	Protein conserved in bacteria
AT03_RS17810	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS17815	COG0842	Transport permease protein
AT03_RS17820	COG1131	(ABC) transporter
AT03_RS17825	COG0288	reversible hydration of carbon dioxide
AT03_RS17845	COG0778	Nitroreductase
AT03_RS17850	COG2132	Multicopper oxidase
AT03_RS17890	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AT03_RS17980	COG4695	Portal protein
AT03_RS18005	COG0338	D12 class N6 adenine-specific DNA methyltransferase
AT03_RS18025	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AT03_RS18035	COG3112	Uncharacterised protein family (UPF0231)
AT03_RS18055	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AT03_RS18060	COG0508	dehydrogenase complex catalyzes the overall conversion of
AT03_RS18065	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
AT03_RS18070	COG2186	Transcriptional regulator
AT03_RS18080	COG1113	amino acid transport
AT03_RS18085	COG2211	Major facilitator Superfamily
AT03_RS18090	COG3940	Belongs to the glycosyl hydrolase 43 family
AT03_RS18095	COG3725	Membrane protein required for beta-lactamase induction
AT03_RS18100	COG3023	N-Acetylmuramoyl-L-alanine amidase
AT03_RS18110	COG4969	Belongs to the N-Me-Phe pilin family
AT03_RS18115	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AT03_RS18120	COG1459	type II secretion system
AT03_RS18125	COG0516	GMP reductase activity
AT03_RS18135	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
AT03_RS18140	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AT03_RS18145	COG0494	nUDIX hydrolase
AT03_RS18160	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AT03_RS18165	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AT03_RS18170	COG0849	cell division
AT03_RS18175	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AT03_RS18185	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AT03_RS18190	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AT03_RS18195	COG0772	Belongs to the SEDS family
AT03_RS18200	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AT03_RS18210	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AT03_RS18215	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AT03_RS18220	COG0768	penicillin binding
AT03_RS18225	COG3116	cell division
AT03_RS18230	COG0275	rRNA processing
AT03_RS18235	COG2001	Belongs to the MraZ family
AT03_RS18245	COG1609	Transcriptional regulator
AT03_RS18255	COG0028	Belongs to the TPP enzyme family
AT03_RS18260	COG1022	Amp-dependent synthetase and ligase
AT03_RS18265	COG0583	DNA-binding transcription factor activity
AT03_RS18275	COG0473	3-isopropylmalate dehydrogenase activity
AT03_RS18280	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AT03_RS18290	COG0471	metal ion transport
AT03_RS18295	COG2814	Major facilitator Superfamily
AT03_RS18305	COG4143	(ABC) transporter
AT03_RS18310	COG1178	ABC-type Fe3 transport system permease component
AT03_RS18315	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
AT03_RS18320	COG0586	Pfam SNARE associated Golgi protein
AT03_RS18325	COG0417	DNA replication proofreading
AT03_RS18335	COG0564	pseudouridine synthase activity
AT03_RS18340	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
AT03_RS18345	COG1924	4 iron, 4 sulfur cluster binding
AT03_RS18355	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AT03_RS18360	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AT03_RS18370	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AT03_RS18375	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AT03_RS18390	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AT03_RS18400	COG2966	Psort location CytoplasmicMembrane, score
AT03_RS18410	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AT03_RS18410	COG0475	glutathione-regulated potassium exporter activity
AT03_RS18420	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AT03_RS18425	COG0505	Belongs to the CarA family
AT03_RS18430	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AT03_RS18435	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AT03_RS18440	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AT03_RS18445	COG2080	2 iron, 2 sulfur cluster binding
AT03_RS18450	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AT03_RS18455	COG1047	Peptidyl-prolyl cis-trans
AT03_RS18470	COG0196	riboflavin kinase activity
AT03_RS18480	COG0583	DNA-binding transcription factor activity
AT03_RS18485	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AT03_RS18495	COG0443	Heat shock 70 kDa protein
AT03_RS18500	COG1584	GPR1 FUN34 yaaH family protein
AT03_RS18525	COG0521	Mo-molybdopterin cofactor biosynthetic process
AT03_RS18535	COG1802	Transcriptional regulator
AT03_RS18540	COG1113	amino acid transport
AT03_RS18545	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AT03_RS18550	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS18555	COG0579	oxidoreductase
AT03_RS18575	COG1115	amino acid carrier protein
AT03_RS18580	COG3022	response to hydroperoxide
AT03_RS18600	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
AT03_RS18605	COG0745	RESPONSE REGULATOR receiver
AT03_RS18610	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AT03_RS18615	COG3118	belongs to the thioredoxin family
AT03_RS18620	COG3148	PFAM DTW domain containing protein
AT03_RS18625	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AT03_RS18625	COG1042	CoA-binding domain protein
AT03_RS18625	COG0045	succinate-CoA ligase (ADP-forming) activity
AT03_RS18630	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AT03_RS18660	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AT03_RS18670	COG2011	ABC-type metal ion transport system permease component
AT03_RS18675	COG1464	Belongs to the NlpA lipoprotein family
AT03_RS18685	COG1720	tRNA m6t6A37 methyltransferase activity
AT03_RS18690	COG0442	prolyl-tRNA aminoacylation
AT03_RS18695	COG3045	CreA protein
AT03_RS18700	COG2207	Transcriptional regulator
AT03_RS18700	COG3708	Transcriptional regulator
AT03_RS18705	COG0406	alpha-ribazole phosphatase activity
AT03_RS18710	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
AT03_RS18715	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
AT03_RS18725	COG1278	Cold shock
AT03_RS18730	COG0488	(ABC) transporter
AT03_RS18740	COG0604	alcohol dehydrogenase
AT03_RS18745	COG3064	Membrane
AT03_RS18755	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
AT03_RS18760	COG0560	Phosphoserine phosphatase
AT03_RS18765	COG3726	membrane protein affecting hemolysin expression
AT03_RS18770	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AT03_RS18780	COG0792	nuclease activity
AT03_RS18785	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AT03_RS18790	COG2823	Periplasmic or secreted lipoprotein
AT03_RS18795	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AT03_RS18800	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
AT03_RS18805	COG5002	protein histidine kinase activity
AT03_RS18805	COG0784	Response regulator, receiver
AT03_RS18805	COG2198	Histidine kinase
AT03_RS18810	COG1242	4 iron, 4 sulfur cluster binding
AT03_RS18815	COG0067	glutamate synthase
AT03_RS18815	COG0070	glutamate synthase
AT03_RS18815	COG0069	glutamate synthase activity
AT03_RS18820	COG0493	'glutamate synthase
AT03_RS18835	COG2731	YhcH YjgK YiaL family protein
AT03_RS18840	COG1737	Transcriptional regulator
AT03_RS18845	COG2969	positive regulation of protein catabolic process
AT03_RS18850	COG0625	glutathione transferase activity
AT03_RS18860	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AT03_RS18865	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AT03_RS18870	COG3105	Protein conserved in bacteria
AT03_RS18875	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AT03_RS18880	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AT03_RS18885	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AT03_RS18890	COG5007	Belongs to the BolA IbaG family
AT03_RS18895	COG3113	response to antibiotic
AT03_RS18900	COG2854	intermembrane phospholipid transfer
AT03_RS18905	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AT03_RS18910	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AT03_RS18915	COG1127	ABC transporter
AT03_RS18920	COG0530	calcium, potassium:sodium antiporter activity
AT03_RS18925	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AT03_RS18925	COG0517	IMP dehydrogenase activity
AT03_RS18930	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AT03_RS18935	COG3117	lipopolysaccharide transmembrane transporter activity
AT03_RS18940	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AT03_RS18945	COG1137	ATPase activity
AT03_RS18950	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AT03_RS18965	COG1660	Displays ATPase and GTPase activities
AT03_RS18970	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS18975	COG3711	transcriptional antiterminator
AT03_RS18975	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AT03_RS18990	COG3964	amidohydrolase
AT03_RS19020	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AT03_RS19025	COG1305	Transglutaminase-like
AT03_RS19035	COG3783	Cytochrome b(562)
AT03_RS19040	COG0312	modulator of DNA gyrase
AT03_RS19045	COG3028	Belongs to the UPF0307 family
AT03_RS19050	COG2732	(Barnase) inhibitor
AT03_RS19060	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS19075	COG0076	glutamate decarboxylase activity
AT03_RS19080	COG0531	amino acid
AT03_RS19090	COG2198	Histidine kinase
AT03_RS19090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AT03_RS19090	COG2205	protein histidine kinase activity
AT03_RS19090	COG0784	Response regulator, receiver
AT03_RS19095	COG2197	response regulator
AT03_RS19100	COG0531	amino acid
AT03_RS19105	COG1982	Orn Lys Arg decarboxylase major
AT03_RS19115	COG1566	PFAM secretion protein HlyD family protein
AT03_RS19120	COG1289	transmembrane transporter activity
AT03_RS19125	COG1388	LysM domain
AT03_RS19125	COG4932	domain protein
AT03_RS19125	COG2373	Large extracellular alpha-helical protein
AT03_RS19130	COG0513	Belongs to the DEAD box helicase family
AT03_RS19140	COG2723	6-phospho-beta-galactosidase activity
AT03_RS19145	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AT03_RS19150	COG0791	NLP P60 protein
AT03_RS19155	COG0235	Class ii aldolase
AT03_RS19160	COG3623	hexulose-6-phosphate isomerase
AT03_RS19165	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
AT03_RS19170	COG1070	Carbohydrate kinase
AT03_RS19185	COG2731	YhcH YjgK YiaL family protein
AT03_RS19195	COG1414	Transcriptional regulator
AT03_RS19220	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AT03_RS19225	COG3069	C4-dicarboxylate transmembrane transporter activity
AT03_RS19240	COG0842	Transport permease protein
AT03_RS19245	COG0842	Transport permease protein
AT03_RS19245	COG1129	ABC transporter
AT03_RS19250	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AT03_RS19255	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS19265	COG2207	Transcriptional regulator
AT03_RS19320	COG0644	oxidoreductase
AT03_RS19325	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
AT03_RS19330	COG2271	Major facilitator Superfamily
AT03_RS19340	COG3039	Transposase
AT03_RS19350	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AT03_RS19355	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AT03_RS19360	COG1120	ATPase activity
AT03_RS19365	COG0500	methyltransferase
AT03_RS19370	COG0157	Belongs to the NadC ModD family
AT03_RS19390	COG0583	DNA-binding transcription factor activity
AT03_RS19395	COG2249	NAD(P)H dehydrogenase (quinone) activity
AT03_RS19410	COG2850	peptidyl-arginine hydroxylation
AT03_RS19415	COG0754	glutathionylspermidine amidase activity
AT03_RS19420	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AT03_RS19425	COG3005	denitrification pathway
AT03_RS19435	COG3381	protein complex oligomerization
AT03_RS19440	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AT03_RS19445	COG0732	type I restriction modification DNA specificity domain
AT03_RS19450	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AT03_RS19465	COG1376	ErfK ybiS ycfS ynhG family protein
AT03_RS19470	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AT03_RS19475	COG0840	transmembrane signaling receptor activity
AT03_RS19480	COG0795	lipopolysaccharide-transporting ATPase activity
AT03_RS19485	COG0795	lipopolysaccharide-transporting ATPase activity
AT03_RS19495	COG2927	DNA polymerase III (CHI subunit)
AT03_RS19510	COG0833	amino acid
AT03_RS19520	COG0531	amino acid
AT03_RS19530	COG3829	transcription factor binding
AT03_RS19545	COG0549	Belongs to the carbamate kinase family
AT03_RS19550	COG2271	Major facilitator Superfamily
AT03_RS19555	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AT03_RS19560	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AT03_RS19570	COG0583	DNA-binding transcription factor activity
AT03_RS19575	COG2731	YhcH YjgK YiaL family protein
AT03_RS19580	COG0366	Alpha amylase catalytic
AT03_RS19585	COG1263	PTS System
AT03_RS19585	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS19590	COG0247	lactate metabolic process
AT03_RS19600	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
AT03_RS19605	COG2271	Major facilitator Superfamily
AT03_RS19610	COG0584	glycerophosphoryl diester phosphodiesterase
AT03_RS19620	COG0625	glutathione transferase activity
AT03_RS19630	COG3276	selenocysteine insertion sequence binding
AT03_RS19640	COG1012	belongs to the aldehyde dehydrogenase family
AT03_RS19645	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AT03_RS19660	COG0540	Belongs to the ATCase OTCase family
AT03_RS19665	COG1289	transmembrane transporter activity
AT03_RS19670	COG1566	PFAM secretion protein HlyD family protein
AT03_RS19680	COG0583	DNA-binding transcription factor activity
AT03_RS19685	COG0312	modulator of DNA gyrase
AT03_RS19690	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AT03_RS19695	COG3164	Protein of unknown function
AT03_RS19705	COG0424	maF-like protein
AT03_RS19710	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
AT03_RS19715	COG1792	Involved in formation and maintenance of cell shape
AT03_RS19720	COG1077	Cell shape determining protein MreB Mrl
AT03_RS19725	COG2200	EAL domain
AT03_RS19725	COG2199	diguanylate cyclase activity
AT03_RS19730	COG0604	alcohol dehydrogenase
AT03_RS19735	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AT03_RS19740	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AT03_RS19745	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AT03_RS19750	COG0511	ligase activity, forming carbon-carbon bonds
AT03_RS19755	COG0439	Biotin carboxylase
AT03_RS19760	COG3924	membrane
AT03_RS19765	COG4145	pantothenate transmembrane transporter activity
AT03_RS19770	COG2264	protein methyltransferase activity
AT03_RS19805	COG2186	Transcriptional regulator
AT03_RS19810	COG3734	2-keto-3-deoxy-galactonokinase
AT03_RS19815	COG0800	Aldolase
AT03_RS19825	COG2814	Major facilitator Superfamily
AT03_RS19830	COG2271	Major facilitator Superfamily
AT03_RS19835	COG0129	dihydroxy-acid dehydratase activity
AT03_RS19840	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AT03_RS19855	COG2723	6-phospho-beta-galactosidase activity
AT03_RS19860	COG2190	(PTS) system
AT03_RS19860	COG1263	PTS System
AT03_RS19860	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AT03_RS19865	COG1737	Transcriptional regulator
AT03_RS19890	COG0583	DNA-binding transcription factor activity
AT03_RS19895	COG0025	NhaP-type Na H and K H
AT03_RS19900	COG2252	PERMEase
AT03_RS19905	COG0402	S-adenosylhomocysteine deaminase activity
AT03_RS19910	COG2233	PERMEase
AT03_RS19915	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AT03_RS19915	COG2080	2 iron, 2 sulfur cluster binding
AT03_RS19920	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
AT03_RS19925	COG0402	S-adenosylhomocysteine deaminase activity
AT03_RS19930	COG0493	'glutamate synthase
AT03_RS19930	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AT03_RS19935	COG2068	MobA-Related Protein
AT03_RS19940	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AT03_RS19945	COG3608	succinylglutamate desuccinylase aspartoacylase
AT03_RS19945	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
AT03_RS19950	COG0549	Belongs to the carbamate kinase family
AT03_RS19960	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AT03_RS19965	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AT03_RS19970	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AT03_RS19975	COG3829	transcription factor binding
AT03_RS19985	COG0629	single-stranded DNA binding
AT03_RS19990	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AT03_RS19995	COG2315	Protein conserved in bacteria
AT03_RS20010	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AT03_RS20015	COG2313	pseudouridylate synthase activity
AT03_RS20020	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AT03_RS20025	COG1448	Aminotransferase
AT03_RS20030	COG0656	L-ascorbic acid biosynthetic process
AT03_RS20045	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
AT03_RS20055	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AT03_RS20060	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
AT03_RS20065	COG0477	Major facilitator Superfamily
AT03_RS20090	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AT03_RS20105	COG0009	L-threonylcarbamoyladenylate synthase
AT03_RS20110	COG0551	DNA topoisomerase type I activity
AT03_RS20115	COG2922	Belongs to the Smg family
AT03_RS20120	COG0758	DNA mediated transformation
AT03_RS20130	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AT03_RS20140	COG0569	domain protein
AT03_RS20145	COG1970	mechanosensitive ion channel activity
AT03_RS20150	COG3036	rescue of stalled ribosome
AT03_RS20155	COG0789	Transcriptional regulator
AT03_RS20165	COG0203	ribosomal protein L17
AT03_RS20185	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AT03_RS20190	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AT03_RS20195	COG0201	protein transport
AT03_RS20205	COG1841	ribosomal large subunit assembly
AT03_RS20210	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AT03_RS20220	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AT03_RS20230	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AT03_RS20260	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AT03_RS20270	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AT03_RS20275	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AT03_RS20290	COG0088	Forms part of the polypeptide exit tunnel
AT03_RS20295	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AT03_RS20300	COG0051	transcription antitermination factor activity, RNA binding
AT03_RS20305	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AT03_RS20310	COG2193	ferroxidase activity
AT03_RS20315	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AT03_RS20320	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AT03_RS20325	COG0049	tRNA binding
AT03_RS20330	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AT03_RS20335	COG2168	tRNA wobble position uridine thiolation
AT03_RS20345	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AT03_RS20350	COG2964	Protein conserved in bacteria
AT03_RS20355	COG0545	Peptidyl-prolyl cis-trans isomerase
AT03_RS20360	COG2900	Belongs to the SlyX family
AT03_RS20365	COG1047	Peptidyl-prolyl cis-trans
AT03_RS20370	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
AT03_RS20380	COG2249	NAD(P)H dehydrogenase (quinone) activity
AT03_RS20385	COG0488	(ABC) transporter
AT03_RS20395	COG2175	clavaminate synthase activity
AT03_RS20400	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AT03_RS20410	COG4521	taurine ABC transporter
AT03_RS20420	COG0429	hydrolase of the alpha beta-hydrolase fold
AT03_RS20425	COG3089	Belongs to the UPF0270 family
AT03_RS20430	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
AT03_RS20435	COG3954	Phosphoribulokinase
AT03_RS20450	COG0583	DNA-binding transcription factor activity
AT03_RS20455	COG1765	OsmC-like protein
AT03_RS20460	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AT03_RS20465	COG1289	transmembrane transporter activity
AT03_RS20475	COG0433	COG0433 Predicted ATPase
AT03_RS20485	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AT03_RS20490	COG1486	melibiose metabolic process
AT03_RS20495	COG1609	Transcriptional regulator
AT03_RS20505	COG0402	S-adenosylhomocysteine deaminase activity
AT03_RS20510	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AT03_RS20515	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AT03_RS20525	COG2116	formate transmembrane transporter activity
AT03_RS20530	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AT03_RS20530	COG1648	precorrin-2 dehydrogenase activity
AT03_RS20540	COG0180	Tryptophanyl-tRNA synthetase
AT03_RS20545	COG0546	phosphoglycolate phosphatase activity
AT03_RS20550	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AT03_RS20565	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AT03_RS20570	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AT03_RS20575	COG4796	Type ii and iii secretion system protein
AT03_RS20600	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AT03_RS20605	COG0494	nUDIX hydrolase
AT03_RS20615	COG1011	Hydrolase
AT03_RS20620	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AT03_RS20625	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AT03_RS20645	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AT03_RS20650	COG2183	response to ionizing radiation
AT03_RS20655	COG1918	ferrous iron import across plasma membrane
AT03_RS20670	COG2267	carboxylic ester hydrolase activity
AT03_RS20675	COG1040	competence protein
AT03_RS20725	COG3477	response to acidic pH
AT03_RS20730	COG2909	trisaccharide binding
AT03_RS20735	COG0058	SHG alpha-glucan phosphorylase activity
AT03_RS20740	COG1640	4-alpha-glucanotransferase
AT03_RS20745	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AT03_RS20750	COG1523	belongs to the glycosyl hydrolase 13 family
AT03_RS20755	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
AT03_RS20765	COG0058	SHG alpha-glucan phosphorylase activity
AT03_RS20770	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
AT03_RS20775	COG2944	sequence-specific DNA binding
AT03_RS20785	COG1349	DNA-binding transcription factor activity
AT03_RS20790	COG0705	Rhomboid family
AT03_RS20795	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AT03_RS20805	COG0584	glycerophosphoryl diester phosphodiesterase
AT03_RS20815	COG0395	ABC-type sugar transport system, permease component
AT03_RS20820	COG1175	transmembrane transport
AT03_RS20825	COG1653	transport
AT03_RS20840	COG4177	L-phenylalanine transmembrane transporter activity
AT03_RS20855	COG0456	acetyltransferase
AT03_RS20865	COG2177	Part of the ABC transporter FtsEX involved in
AT03_RS20870	COG2884	Cell division ATP-binding protein ftsE
AT03_RS20875	COG0552	protein localization to endoplasmic reticulum
AT03_RS20875	COG0552	protein localization to endoplasmic reticulum
AT03_RS20880	COG0742	ribosomal rna small subunit methyltransferase
AT03_RS20885	COG3776	membrane
AT03_RS20900	COG3714	YhhN family
AT03_RS20905	COG3048	D-serine ammonia-lyase activity
AT03_RS20910	COG2610	gluconate transmembrane transporter activity
AT03_RS20915	COG0583	DNA-binding transcription factor activity
AT03_RS20920	COG2258	MOSC domain
AT03_RS20925	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AT03_RS20930	COG3835	regulator
AT03_RS20935	COG1929	Belongs to the glycerate kinase type-1 family
AT03_RS20940	COG2610	gluconate transmembrane transporter activity
AT03_RS20950	COG3383	formate dehydrogenase (NAD+) activity
AT03_RS20950	COG0243	molybdopterin cofactor binding
AT03_RS20955	COG3383	formate dehydrogenase (NAD+) activity
AT03_RS20955	COG0243	molybdopterin cofactor binding
AT03_RS20960	COG0437	4 iron, 4 sulfur cluster binding
AT03_RS20965	COG2864	formate dehydrogenase
AT03_RS20970	COG3058	Necessary for formate dehydrogenase activity
AT03_RS20975	COG0561	phosphatase activity
AT03_RS20980	COG2267	carboxylic ester hydrolase activity
AT03_RS20985	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AT03_RS20990	COG3275	phosphorelay sensor kinase activity
AT03_RS20995	COG1247	-acetyltransferase
AT03_RS21055	COG2081	HI0933 family
AT03_RS21060	COG0306	phosphate transporter
AT03_RS21065	COG0733	neurotransmitter:sodium symporter activity
AT03_RS21075	COG0589	response to stress
AT03_RS21100	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AT03_RS21110	COG0583	DNA-binding transcription factor activity
AT03_RS21115	COG1295	ribonuclease BN
AT03_RS21120	COG0583	DNA-binding transcription factor activity
AT03_RS21125	COG2814	Major facilitator Superfamily
AT03_RS21140	COG2261	transglycosylase associated protein
AT03_RS21150	COG2982	Protein involved in outer membrane biogenesis
AT03_RS21155	COG2200	EAL domain
AT03_RS21160	COG1942	4-Oxalocrotonate Tautomerase
AT03_RS21165	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AT03_RS21170	COG0612	Peptidase, M16
AT03_RS21180	COG2200	EAL domain
AT03_RS21180	COG2199	diguanylate cyclase activity
AT03_RS21185	COG3118	belongs to the thioredoxin family
AT03_RS21185	COG0457	Tetratricopeptide repeat
AT03_RS21190	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AT03_RS21195	COG1215	transferase activity, transferring glycosyl groups
AT03_RS21230	COG4608	Belongs to the ABC transporter superfamily
AT03_RS21235	COG0444	Belongs to the ABC transporter superfamily
AT03_RS21240	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AT03_RS21245	COG0601	transmembrane transport
AT03_RS21250	COG0747	negative chemotaxis
AT03_RS21255	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AT03_RS21265	COG2194	sulfuric ester hydrolase activity
AT03_RS21270	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AT03_RS21280	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
AT03_RS21290	COG0531	amino acid
AT03_RS21295	COG2207	Transcriptional regulator
AT03_RS21300	COG1982	Orn Lys Arg decarboxylase major
AT03_RS21320	COG1882	Formate acetyltransferase
AT03_RS21325	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AT03_RS21330	COG0814	amino acid
AT03_RS21335	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AT03_RS21345	COG2094	Belongs to the DNA glycosylase MPG family
AT03_RS21350	COG2207	Transcriptional regulator
AT03_RS21350	COG0662	Cupin 2, conserved barrel domain protein
AT03_RS21355	COG1028	Short-chain dehydrogenase reductase Sdr
AT03_RS21360	COG0784	Response regulator, receiver
AT03_RS21360	COG0835	chemotaxis
AT03_RS21385	COG1486	melibiose metabolic process
AT03_RS21390	COG2169	Transcriptional regulator
AT03_RS21390	COG1917	Cupin 2, conserved barrel domain protein
AT03_RS21395	COG1447	Phosphotransferase system cellobiose-specific component IIA
AT03_RS21400	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AT03_RS21405	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AT03_RS21425	COG2211	Major facilitator Superfamily
AT03_RS21430	COG1501	Belongs to the glycosyl hydrolase 31 family
AT03_RS21435	COG2807	transmembrane transport
AT03_RS21440	COG0590	tRNA wobble adenosine to inosine editing
AT03_RS21445	COG0527	aspartate kinase activity
AT03_RS21445	COG0460	homoserine dehydrogenase
AT03_RS21450	COG0626	cystathionine gamma-synthase activity
AT03_RS21550	COG5001	Diguanylate cyclase
AT03_RS21550	COG3706	GGDEF domain
AT03_RS21550	COG2203	Gaf domain
AT03_RS21550	COG4251	negative regulation of phosphorylation
AT03_RS21555	COG2207	Transcriptional regulator
AT03_RS21575	COG1335	isochorismatase
AT03_RS21600	COG0463	Glycosyl transferase, family 2
AT03_RS21600	COG1216	Glycosyl transferase, family 2