HALSA_RS00010	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS00010	SM00760	Bacterial dnaA protein helix-turn-helix domain
HALSA_RS00015	SM00480	DNA polymerase III beta subunit
HALSA_RS00020	SM00363	S4 RNA-binding domain
HALSA_RS00035	SM00387	Histidine kinase-like ATPases
HALSA_RS00035	SM00433	TopoisomeraseII
HALSA_RS00040	SM00434	DNA Topoisomerase IV
HALSA_RS00110	SM01120	HALSA_RS00110
HALSA_RS00120	SM00420	helix_turn_helix, Deoxyribose operon repressor
HALSA_RS00120	SM01134	HALSA_RS00120
HALSA_RS00210	SM00470	ParB-like nuclease domain
HALSA_RS00225	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS00340	SM00984	UDP binding domain
HALSA_RS00375	SM00530	Helix-turn-helix XRE-family like proteins 
HALSA_RS00385	SM00400	zinc finger
HALSA_RS00525	SM00155	Phospholipase D. Active site motifs.
HALSA_RS00535	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HALSA_RS00560	SM00271	DnaJ molecular chaperone homology domain
HALSA_RS00630	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HALSA_RS00655	SM00091	PAS domain
HALSA_RS00655	SM00267	diguanylate cyclase
HALSA_RS00655	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS00665	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
HALSA_RS00720	SM00938	Nitrogen regulatory protein P-II
HALSA_RS00725	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS00770	SM01061	CAT RNA binding domain
HALSA_RS00820	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HALSA_RS00820	SM00895	HALSA_RS00820
HALSA_RS00825	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HALSA_RS00825	SM00895	HALSA_RS00825
HALSA_RS00830	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS00855	SM00861	Transketolase, pyrimidine binding domain
HALSA_RS00880	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS00915	SM00881	CoA binding domain
HALSA_RS00925	SM00919	Malic enzyme, NAD binding domain
HALSA_RS00925	SM01274	HALSA_RS00925
HALSA_RS00930	SM00919	Malic enzyme, NAD binding domain
HALSA_RS00930	SM01274	HALSA_RS00930
HALSA_RS00995	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
HALSA_RS00995	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HALSA_RS01030	SM00851	MGS-like domain
HALSA_RS01030	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
HALSA_RS01035	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS01035	SM00091	PAS domain
HALSA_RS01035	SM00267	diguanylate cyclase
HALSA_RS01040	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS01040	SM00091	PAS domain
HALSA_RS01040	SM00267	diguanylate cyclase
HALSA_RS01040	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS01050	SM01230	HALSA_RS01050
HALSA_RS01100	SM00487	DEAD-like helicases superfamily
HALSA_RS01100	SM00490	helicase superfamily c-terminal domain
HALSA_RS01150	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01155	SM00478	endonuclease III
HALSA_RS01160	SM00927	DNA mismatch repair enzyme MutH
HALSA_RS01195	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01260	SM01321	HALSA_RS01260
HALSA_RS01270	SM01133	HALSA_RS01270
HALSA_RS01290	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01295	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01300	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HALSA_RS01335	SM00448	cheY-homologous receiver domain
HALSA_RS01340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS01355	SM00855	Phosphoglycerate mutase family
HALSA_RS01410	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01425	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS01560	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01565	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01615	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
HALSA_RS01655	SM00704	CDGSH-type zinc finger. Function unknown.
HALSA_RS01675	SM00881	CoA binding domain
HALSA_RS01680	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS01680	SM00091	PAS domain
HALSA_RS01680	SM00267	diguanylate cyclase
HALSA_RS01725	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01735	SM00493	HALSA_RS01735
HALSA_RS01740	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS01740	SM01240	HALSA_RS01740
HALSA_RS01790	SM00881	CoA binding domain
HALSA_RS01795	SM00849	Metallo-beta-lactamase superfamily
HALSA_RS01805	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
HALSA_RS01805	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
HALSA_RS01810	SM01005	Alanine racemase, C-terminal domain
HALSA_RS01910	SM00448	cheY-homologous receiver domain
HALSA_RS01910	SM00862	Transcriptional regulatory protein, C terminal
HALSA_RS01915	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HALSA_RS01915	SM00387	Histidine kinase-like ATPases
HALSA_RS01915	SM00388	His Kinase A (phosphoacceptor) domain
HALSA_RS01945	SM00836	DALR anticodon binding domain
HALSA_RS01945	SM01016	Arginyl tRNA synthetase N terminal dom
HALSA_RS01975	SM00357	Cold shock protein domain
HALSA_RS01975	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS01975	SM00959	Rho termination factor, N-terminal domain
HALSA_RS01990	SM00937	HALSA_RS01990
HALSA_RS02005	SM00226	Low molecular weight phosphatase family
HALSA_RS02065	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS02090	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS02120	SM00935	Outer membrane protein (OmpH-like)
HALSA_RS02180	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS02195	SM00732	Likely ribonuclease with RNase H fold.
HALSA_RS02315	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS02405	SM00957	SecA DEAD-like domain
HALSA_RS02405	SM00958	SecA preprotein cross-linking domain
HALSA_RS02410	SM00937	HALSA_RS02410
HALSA_RS02435	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HALSA_RS02435	SM00245	tail specific protease
HALSA_RS02455	SM00487	DEAD-like helicases superfamily
HALSA_RS02455	SM00490	helicase superfamily c-terminal domain
HALSA_RS02460	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS02480	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS02520	SM01321	HALSA_RS02520
HALSA_RS02540	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HALSA_RS02540	SM00465	GIY-YIG type nucleases (URI domain)
HALSA_RS02560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HALSA_RS02560	SM00895	HALSA_RS02560
HALSA_RS02565	SM00091	PAS domain
HALSA_RS02565	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS02570	SM00267	diguanylate cyclase
HALSA_RS02570	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS02575	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS02575	SM00091	PAS domain
HALSA_RS02610	SM00062	Bacterial periplasmic substrate-binding proteins
HALSA_RS02620	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS02640	SM00893	Electron transfer flavoprotein domain
HALSA_RS02645	SM00893	Electron transfer flavoprotein domain
HALSA_RS02685	SM00267	diguanylate cyclase
HALSA_RS02690	SM00091	PAS domain
HALSA_RS02700	SM00642	Alpha-amylase domain
HALSA_RS02705	SM00387	Histidine kinase-like ATPases
HALSA_RS02705	SM00448	cheY-homologous receiver domain
HALSA_RS02710	SM00267	diguanylate cyclase
HALSA_RS02715	SM00448	cheY-homologous receiver domain
HALSA_RS02780	SM00564	beta-propeller repeat
HALSA_RS02860	SM00091	PAS domain
HALSA_RS02860	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS02875	SM01130	HALSA_RS02875
HALSA_RS02975	SM00487	DEAD-like helicases superfamily
HALSA_RS02975	SM00490	helicase superfamily c-terminal domain
HALSA_RS03010	SM00530	Helix-turn-helix XRE-family like proteins 
HALSA_RS03045	SM00910	HALSA_RS03045
HALSA_RS03060	SM00966	SpoVT / AbrB like domain 
HALSA_RS03105	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS03150	SM00448	cheY-homologous receiver domain
HALSA_RS03150	SM00850	LytTr DNA-binding domain
HALSA_RS03170	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS03195	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS03300	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HALSA_RS03305	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS03325	SM01007	Class II Aldolase and Adducin N-terminal domain
HALSA_RS03345	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS03370	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS03370	SM00924	MgtE intracellular N domain
HALSA_RS03395	SM00420	helix_turn_helix, Deoxyribose operon repressor
HALSA_RS03395	SM01134	HALSA_RS03395
HALSA_RS03420	SM00861	Transketolase, pyrimidine binding domain
HALSA_RS03450	SM00420	helix_turn_helix, Deoxyribose operon repressor
HALSA_RS03450	SM01134	HALSA_RS03450
HALSA_RS03535	SM00318	Staphylococcal nuclease homologues
HALSA_RS03570	SM00876	Biotin and Thiamin Synthesis associated domain
HALSA_RS03575	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS03635	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS03650	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
HALSA_RS03680	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
HALSA_RS03735	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HALSA_RS03745	SM01321	HALSA_RS03745
HALSA_RS03770	SM00346	helix_turn_helix isocitrate lyase regulation
HALSA_RS03795	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS03840	SM00859	Semialdehyde dehydrogenase, NAD binding domain
HALSA_RS03905	SM00642	Alpha-amylase domain
HALSA_RS03930	SM00642	Alpha-amylase domain
HALSA_RS03935	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HALSA_RS03945	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS03965	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS03990	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS04055	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS04085	SM00450	Rhodanese Homology Domain
HALSA_RS04085	SM00849	Metallo-beta-lactamase superfamily
HALSA_RS04100	SM00100	Cyclic nucleotide-monophosphate binding domain
HALSA_RS04100	SM00419	helix_turn_helix, cAMP Regulatory protein
HALSA_RS04115	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS04120	SM01120	HALSA_RS04120
HALSA_RS04120	SM01121	HALSA_RS04120
HALSA_RS04135	SM01350	HALSA_RS04135
HALSA_RS04165	SM00347	helix_turn_helix multiple antibiotic resistance protein
HALSA_RS04245	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
HALSA_RS04265	SM01192	HALSA_RS04265
HALSA_RS04265	SM01193	HALSA_RS04265
HALSA_RS04315	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS04320	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS04320	SM00357	Cold shock protein domain
HALSA_RS04320	SM00955	HALSA_RS04320
HALSA_RS04335	SM00267	diguanylate cyclase
HALSA_RS04335	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS04375	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS04380	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS04380	SM00091	PAS domain
HALSA_RS04380	SM00387	Histidine kinase-like ATPases
HALSA_RS04380	SM00388	His Kinase A (phosphoacceptor) domain
HALSA_RS04385	SM00646	HALSA_RS04385
HALSA_RS04390	SM00909	Sporulation and spore germination
HALSA_RS04445	SM00052	Putative diguanylate phosphodiesterase
HALSA_RS04445	SM00267	diguanylate cyclase
HALSA_RS04470	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS04470	SM00994	ClpX C4-type zinc finger
HALSA_RS04470	SM01086	C-terminal, D2-small domain, of ClpB protein
HALSA_RS04475	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS04475	SM00464	Found in ATP-dependent protease La (LON)
HALSA_RS04525	SM00387	Histidine kinase-like ATPases
HALSA_RS04530	SM00342	helix_turn_helix, arabinose operon control protein
HALSA_RS04530	SM00448	cheY-homologous receiver domain
HALSA_RS04570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HALSA_RS04570	SM00895	HALSA_RS04570
HALSA_RS04575	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HALSA_RS04575	SM00895	HALSA_RS04575
HALSA_RS04635	SM00858	HALSA_RS04635
HALSA_RS04660	SM00091	PAS domain
HALSA_RS04660	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS04670	SM00861	Transketolase, pyrimidine binding domain
HALSA_RS04700	SM00829	Enoylreductase
HALSA_RS04745	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS04855	SM00905	Dihydroneopterin aldolase
HALSA_RS04940	SM00046	Diacylglycerol kinase catalytic domain (presumed)
HALSA_RS04960	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS04970	SM00342	helix_turn_helix, arabinose operon control protein
HALSA_RS04970	SM00448	cheY-homologous receiver domain
HALSA_RS04975	SM00877	HALSA_RS04975
HALSA_RS04980	SM00877	HALSA_RS04980
HALSA_RS05010	SM00877	HALSA_RS05010
HALSA_RS05015	SM00877	HALSA_RS05015
HALSA_RS05055	SM00877	HALSA_RS05055
HALSA_RS05070	SM00877	HALSA_RS05070
HALSA_RS05155	SM01018	B12 binding domain
HALSA_RS05160	SM00342	helix_turn_helix, arabinose operon control protein
HALSA_RS05230	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS05325	SM00091	PAS domain
HALSA_RS05325	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HALSA_RS05325	SM00387	Histidine kinase-like ATPases
HALSA_RS05325	SM00388	His Kinase A (phosphoacceptor) domain
HALSA_RS05330	SM00448	cheY-homologous receiver domain
HALSA_RS05335	SM00028	Tetratricopeptide repeats
HALSA_RS05335	SM00448	cheY-homologous receiver domain
HALSA_RS05400	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS05415	SM00342	helix_turn_helix, arabinose operon control protein
HALSA_RS05450	SM00642	Alpha-amylase domain
HALSA_RS05470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS05495	SM00257	Lysin motif
HALSA_RS05510	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HALSA_RS05540	SM00852	Probable molybdopterin binding domain
HALSA_RS05545	SM00852	Probable molybdopterin binding domain
HALSA_RS05550	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS05560	SM00852	Probable molybdopterin binding domain
HALSA_RS05580	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
HALSA_RS05585	SM00825	Beta-ketoacyl synthase
HALSA_RS05605	SM00861	Transketolase, pyrimidine binding domain
HALSA_RS05635	SM00900	HALSA_RS05635
HALSA_RS05720	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS05730	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS05750	SM01103	HALSA_RS05750
HALSA_RS05760	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS05765	SM00938	Nitrogen regulatory protein P-II
HALSA_RS05780	SM01230	HALSA_RS05780
HALSA_RS05875	SM00052	Putative diguanylate phosphodiesterase
HALSA_RS05945	SM00506	Appr-1"-p processing enzyme
HALSA_RS05985	SM00919	Malic enzyme, NAD binding domain
HALSA_RS05985	SM01274	HALSA_RS05985
HALSA_RS06030	SM00450	Rhodanese Homology Domain
HALSA_RS06085	SM00878	Biotin carboxylase C-terminal domain
HALSA_RS06120	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS06125	SM00487	DEAD-like helicases superfamily
HALSA_RS06125	SM00490	helicase superfamily c-terminal domain
HALSA_RS06130	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
HALSA_RS06140	SM01130	HALSA_RS06140
HALSA_RS06165	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS06165	SM01086	C-terminal, D2-small domain, of ClpB protein
HALSA_RS06185	SM00966	SpoVT / AbrB like domain 
HALSA_RS06235	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HALSA_RS06235	SM00866	HALSA_RS06235
HALSA_RS06265	SM00857	Resolvase, N terminal domain
HALSA_RS06270	SM00257	Lysin motif
HALSA_RS06280	SM00986	Uracil DNA glycosylase superfamily
HALSA_RS06280	SM00987	UreE urease accessory protein, C-terminal domain 
HALSA_RS06285	SM00028	Tetratricopeptide repeats
HALSA_RS06305	SM00853	MutL C terminal dimerisation domain
HALSA_RS06305	SM01340	HALSA_RS06305
HALSA_RS06310	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
HALSA_RS06310	SM00534	ATPase domain of DNA mismatch repair MUTS family
HALSA_RS06315	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS06335	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS06335	SM00387	Histidine kinase-like ATPases
HALSA_RS06345	SM00387	Histidine kinase-like ATPases
HALSA_RS06345	SM00433	TopoisomeraseII
HALSA_RS06350	SM00434	DNA Topoisomerase IV
HALSA_RS06385	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HALSA_RS06385	SM00387	Histidine kinase-like ATPases
HALSA_RS06385	SM00388	His Kinase A (phosphoacceptor) domain
HALSA_RS06390	SM00448	cheY-homologous receiver domain
HALSA_RS06390	SM00862	Transcriptional regulatory protein, C terminal
HALSA_RS06400	SM00854	Bacterial capsule synthesis protein PGA_cap
HALSA_RS06405	SM00322	K homology RNA-binding domain
HALSA_RS06405	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS06415	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS06425	SM00028	Tetratricopeptide repeats
HALSA_RS06425	SM00671	Sel1-like repeats.
HALSA_RS06430	SM00852	Probable molybdopterin binding domain
HALSA_RS06445	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS06470	SM00534	ATPase domain of DNA mismatch repair MUTS family
HALSA_RS06475	SM00534	ATPase domain of DNA mismatch repair MUTS family
HALSA_RS06545	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS06555	SM00843	HALSA_RS06555
HALSA_RS06560	SM00849	Metallo-beta-lactamase superfamily
HALSA_RS06565	SM00859	Semialdehyde dehydrogenase, NAD binding domain
HALSA_RS06575	SM00981	HALSA_RS06575
HALSA_RS06670	SM00257	Lysin motif
HALSA_RS06675	SM00487	DEAD-like helicases superfamily
HALSA_RS06675	SM00491	HALSA_RS06675
HALSA_RS06680	SM00518	AP endonuclease family 2
HALSA_RS06685	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS06685	SM00322	K homology RNA-binding domain
HALSA_RS06690	SM01387	HALSA_RS06690
HALSA_RS06695	SM00904	Riboflavin kinase
HALSA_RS06725	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS06725	SM00322	K homology RNA-binding domain
HALSA_RS06735	SM00479	HALSA_RS06735
HALSA_RS06735	SM00481	DNA polymerase alpha chain like domain
HALSA_RS06750	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HALSA_RS06800	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS06800	SM01086	C-terminal, D2-small domain, of ClpB protein
HALSA_RS06810	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
HALSA_RS06810	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
HALSA_RS06810	SM00493	HALSA_RS06810
HALSA_RS06865	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS06915	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS06915	SM00962	SRP54-type protein, GTPase domain
HALSA_RS06915	SM00963	SRP54-type protein, helical bundle domain
HALSA_RS06925	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS06925	SM00962	SRP54-type protein, GTPase domain
HALSA_RS06925	SM00963	SRP54-type protein, helical bundle domain
HALSA_RS06930	SM00968	SMC proteins Flexible Hinge Domain
HALSA_RS06940	SM00363	S4 RNA-binding domain
HALSA_RS06970	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
HALSA_RS06995	SM00448	cheY-homologous receiver domain
HALSA_RS07010	SM00363	S4 RNA-binding domain
HALSA_RS07015	SM00861	Transketolase, pyrimidine binding domain
HALSA_RS07085	SM00841	Elongation factor P, C-terminal
HALSA_RS07085	SM01185	HALSA_RS07085
HALSA_RS07165	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS07170	SM00917	LeuA allosteric (dimerisation) domain
HALSA_RS07175	SM01329	HALSA_RS07175
HALSA_RS07190	SM00917	LeuA allosteric (dimerisation) domain
HALSA_RS07230	SM00421	helix_turn_helix, Lux Regulon
HALSA_RS07235	SM00965	Secretin and TonB N terminus short domain
HALSA_RS07255	SM00842	Cell division protein FtsA
HALSA_RS07310	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS07325	SM00100	Cyclic nucleotide-monophosphate binding domain
HALSA_RS07325	SM00419	helix_turn_helix, cAMP Regulatory protein
HALSA_RS07335	SM00966	SpoVT / AbrB like domain 
HALSA_RS07370	SM00732	Likely ribonuclease with RNase H fold.
HALSA_RS07380	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
HALSA_RS07385	SM00363	S4 RNA-binding domain
HALSA_RS07395	SM00463	Small MutS-related domain
HALSA_RS07395	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
HALSA_RS07395	SM00534	ATPase domain of DNA mismatch repair MUTS family
HALSA_RS07400	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HALSA_RS07400	SM00481	DNA polymerase alpha chain like domain
HALSA_RS07400	SM00483	DNA polymerase X family
HALSA_RS07415	SM00873	B3/4 domain
HALSA_RS07415	SM00874	tRNA synthetase B5 domain
HALSA_RS07415	SM00896	Ferredoxin-fold anticodon binding domain
HALSA_RS07425	SM00967	RNA 2'-O ribose methyltransferase substrate binding
HALSA_RS07455	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
HALSA_RS07520	SM00365	Leucine-rich repeat, SDS22-like subfamily
HALSA_RS07520	SM00369	Leucine-rich repeats, typical (most populated) subfamily
HALSA_RS07535	SM00098	Alkaline phosphatase homologues
HALSA_RS07555	SM00365	Leucine-rich repeat, SDS22-like subfamily
HALSA_RS07555	SM00369	Leucine-rich repeats, typical (most populated) subfamily
HALSA_RS07565	SM00098	Alkaline phosphatase homologues
HALSA_RS07600	SM00487	DEAD-like helicases superfamily
HALSA_RS07600	SM00490	helicase superfamily c-terminal domain
HALSA_RS07625	SM00831	Cation transporter/ATPase, N-terminus
HALSA_RS07640	SM00529	Helix-turn-helix diphteria tox regulatory element
HALSA_RS07650	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS07695	SM00893	Electron transfer flavoprotein domain
HALSA_RS07700	SM00893	Electron transfer flavoprotein domain
HALSA_RS07725	SM00257	Lysin motif
HALSA_RS07735	SM00849	Metallo-beta-lactamase superfamily
HALSA_RS07745	SM00028	Tetratricopeptide repeats
HALSA_RS07750	SM00670	Large family of predicted nucleotide-binding domains
HALSA_RS07760	SM00478	endonuclease III
HALSA_RS07760	SM00525	HALSA_RS07760
HALSA_RS07770	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS07825	SM00411	bacterial (prokaryotic) histone like domain
HALSA_RS07835	SM01207	HALSA_RS07835
HALSA_RS07850	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS07855	SM00563	Phosphate acyltransferases
HALSA_RS07870	SM00358	Double-stranded RNA binding motif
HALSA_RS07870	SM00535	Ribonuclease III family
HALSA_RS07880	SM00822	HALSA_RS07880
HALSA_RS07920	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HALSA_RS07960	SM00487	DEAD-like helicases superfamily
HALSA_RS07960	SM00490	helicase superfamily c-terminal domain
HALSA_RS07970	SM01120	HALSA_RS07970
HALSA_RS07970	SM01121	HALSA_RS07970
HALSA_RS07985	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
HALSA_RS08000	SM00220	Serine/Threonine protein kinases, catalytic domain
HALSA_RS08000	SM00740	HALSA_RS08000
HALSA_RS08005	SM00331	Sigma factor PP2C-like phosphatases
HALSA_RS08005	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
HALSA_RS08055	SM01409	HALSA_RS08055
HALSA_RS08060	SM00072	Guanylate kinase homologues.
HALSA_RS08080	SM00838	Elongation factor G C-terminus
HALSA_RS08080	SM00889	Elongation factor G, domain IV
HALSA_RS08085	SM00849	Metallo-beta-lactamase superfamily
HALSA_RS08090	SM00363	S4 RNA-binding domain
HALSA_RS08110	SM00363	S4 RNA-binding domain
HALSA_RS08130	SM00864	Tubulin/FtsZ family, GTPase domain
HALSA_RS08130	SM00865	Tubulin/FtsZ family, C-terminal domain
HALSA_RS08135	SM00842	Cell division protein FtsA
HALSA_RS08180	SM00740	HALSA_RS08180
HALSA_RS08335	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS08355	SM00028	Tetratricopeptide repeats
HALSA_RS08360	SM00849	Metallo-beta-lactamase superfamily
HALSA_RS08370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS08370	SM00954	Region found in RelA / SpoT proteins
HALSA_RS08405	SM01323	HALSA_RS08405
HALSA_RS08420	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS08425	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HALSA_RS08465	SM00400	zinc finger
HALSA_RS08465	SM00493	HALSA_RS08465
HALSA_RS08470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS08495	SM01133	HALSA_RS08495
HALSA_RS08500	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS08500	SM00924	MgtE intracellular N domain
HALSA_RS08520	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS08520	SM01091	Transporter associated domain
HALSA_RS08535	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS08570	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS08580	SM00271	DnaJ molecular chaperone homology domain
HALSA_RS08600	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS08605	SM00838	Elongation factor G C-terminus
HALSA_RS08620	SM00849	Metallo-beta-lactamase superfamily
HALSA_RS08625	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HALSA_RS08695	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS08710	SM01018	B12 binding domain
HALSA_RS08765	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS08785	SM00046	Diacylglycerol kinase catalytic domain (presumed)
HALSA_RS08815	SM00347	helix_turn_helix multiple antibiotic resistance protein
HALSA_RS08860	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS08890	SM00354	helix_turn _helix lactose operon repressor
HALSA_RS08900	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS08905	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS08915	SM00851	MGS-like domain
HALSA_RS08925	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
HALSA_RS08925	SM01232	HALSA_RS08925
HALSA_RS08930	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
HALSA_RS08930	SM00475	5'-3' exonuclease
HALSA_RS08930	SM00482	DNA polymerase A domain
HALSA_RS08935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HALSA_RS08935	SM00387	Histidine kinase-like ATPases
HALSA_RS08935	SM00388	His Kinase A (phosphoacceptor) domain
HALSA_RS08940	SM00448	cheY-homologous receiver domain
HALSA_RS08940	SM00862	Transcriptional regulatory protein, C terminal
HALSA_RS08945	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HALSA_RS08950	SM00855	Phosphoglycerate mutase family
HALSA_RS08975	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
HALSA_RS09005	SM00851	MGS-like domain
HALSA_RS09005	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
HALSA_RS09010	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
HALSA_RS09015	SM00902	Iron hydrogenase small subunit
HALSA_RS09015	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
HALSA_RS09020	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
HALSA_RS09065	SM00357	Cold shock protein domain
HALSA_RS09090	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS09090	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS09165	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HALSA_RS09220	SM01043	Bacterial transcriptional activator domain
HALSA_RS09245	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS09250	SM00481	DNA polymerase alpha chain like domain
HALSA_RS09270	SM00481	DNA polymerase alpha chain like domain
HALSA_RS09295	SM00834	Putative regulatory protein
HALSA_RS09315	SM00450	Rhodanese Homology Domain
HALSA_RS09320	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HALSA_RS09330	SM00845	GatB domain
HALSA_RS09345	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HALSA_RS09345	SM00292	breast cancer carboxy-terminal domain
HALSA_RS09345	SM00532	Ligase N family
HALSA_RS09355	SM00465	GIY-YIG type nucleases (URI domain)
HALSA_RS09435	SM00883	Chaperonin 10 Kd subunit
HALSA_RS09470	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
HALSA_RS09480	SM00902	Iron hydrogenase small subunit
HALSA_RS09480	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
HALSA_RS09485	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
HALSA_RS09495	SM00387	Histidine kinase-like ATPases
HALSA_RS09505	SM00481	DNA polymerase alpha chain like domain
HALSA_RS09520	SM00387	Histidine kinase-like ATPases
HALSA_RS09620	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS09625	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS09635	SM00662	RNA polymerases D
HALSA_RS09640	SM00363	S4 RNA-binding domain
HALSA_RS09640	SM01390	HALSA_RS09640
HALSA_RS09660	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS09715	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
HALSA_RS09720	SM01374	HALSA_RS09720
HALSA_RS09740	SM00322	K homology RNA-binding domain
HALSA_RS09755	SM01382	HALSA_RS09755
HALSA_RS09755	SM01383	HALSA_RS09755
HALSA_RS09775	SM01403	HALSA_RS09775
HALSA_RS09785	SM00838	Elongation factor G C-terminus
HALSA_RS09785	SM00889	Elongation factor G, domain IV
HALSA_RS09805	SM00663	RNA polymerase I subunit A N-terminus
HALSA_RS09830	SM00649	Ribosomal protein L11/L12
HALSA_RS09835	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
HALSA_RS09835	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
HALSA_RS09860	SM00967	RNA 2'-O ribose methyltransferase substrate binding
HALSA_RS09870	SM00840	HALSA_RS09870
HALSA_RS09880	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS09895	SM00670	Large family of predicted nucleotide-binding domains
HALSA_RS09900	SM01058	CarD-like/TRCF domain
HALSA_RS09915	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS09915	SM01086	C-terminal, D2-small domain, of ClpB protein
HALSA_RS10020	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10025	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10035	SM00977	TilS substrate C-terminal domain
HALSA_RS10050	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS10060	SM00316	Ribosomal protein S1-like RNA-binding domain
HALSA_RS10060	SM00732	Likely ribonuclease with RNase H fold.
HALSA_RS10090	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HALSA_RS10100	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10105	SM00354	helix_turn _helix lactose operon repressor
HALSA_RS10120	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10225	SM00936	Penicillin-binding protein 5, C-terminal domain 
HALSA_RS10240	SM00487	DEAD-like helicases superfamily
HALSA_RS10240	SM00490	helicase superfamily c-terminal domain
HALSA_RS10240	SM00982	HALSA_RS10240
HALSA_RS10240	SM01058	CarD-like/TRCF domain
HALSA_RS10255	SM01400	HALSA_RS10255
HALSA_RS10280	SM01230	HALSA_RS10280
HALSA_RS10285	SM00422	helix_turn_helix, mercury resistance
HALSA_RS10310	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10320	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10340	SM00091	PAS domain
HALSA_RS10340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HALSA_RS10340	SM00387	Histidine kinase-like ATPases
HALSA_RS10340	SM00388	His Kinase A (phosphoacceptor) domain
HALSA_RS10345	SM00448	cheY-homologous receiver domain
HALSA_RS10345	SM00862	Transcriptional regulatory protein, C terminal
HALSA_RS10365	SM00650	Ribosomal RNA adenine dimethylases
HALSA_RS10385	SM00981	HALSA_RS10385
HALSA_RS10390	SM01211	HALSA_RS10390
HALSA_RS10400	SM00470	ParB-like nuclease domain
HALSA_RS10450	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10450	SM00930	HALSA_RS10450
HALSA_RS10455	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HALSA_RS10480	SM00899	HALSA_RS10480
HALSA_RS10505	SM01329	HALSA_RS10505
HALSA_RS10510	SM00481	DNA polymerase alpha chain like domain
HALSA_RS10560	SM00450	Rhodanese Homology Domain
HALSA_RS10600	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10635	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS10665	SM00877	HALSA_RS10665
HALSA_RS10670	SM00877	HALSA_RS10670
HALSA_RS10695	SM00877	HALSA_RS10695
HALSA_RS10720	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS10750	SM00996	S-adenosyl-L-homocysteine hydrolase
HALSA_RS10750	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
HALSA_RS10785	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
HALSA_RS10795	SM01092	CO dehydrogenase flavoprotein C-terminal domain
HALSA_RS10815	SM01092	CO dehydrogenase flavoprotein C-terminal domain
HALSA_RS10820	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
HALSA_RS10835	SM00530	Helix-turn-helix XRE-family like proteins 
HALSA_RS10875	SM01007	Class II Aldolase and Adducin N-terminal domain
HALSA_RS10945	SM00116	Domain in cystathionine beta-synthase and other proteins.
HALSA_RS10970	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS11030	SM00838	Elongation factor G C-terminus
HALSA_RS11035	SM00357	Cold shock protein domain
HALSA_RS11040	SM00357	Cold shock protein domain
HALSA_RS11130	SM00881	CoA binding domain
HALSA_RS11140	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS11155	SM00642	Alpha-amylase domain
HALSA_RS11160	SM00354	helix_turn _helix lactose operon repressor
HALSA_RS11165	SM01321	HALSA_RS11165
HALSA_RS11195	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS11315	SM00855	Phosphoglycerate mutase family
HALSA_RS11325	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS11355	SM01001	AIR carboxylase
HALSA_RS11365	SM00729	Elongator protein 3, MiaB family, Radical SAM
HALSA_RS11430	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS11455	SM00642	Alpha-amylase domain
HALSA_RS11460	SM00357	Cold shock protein domain
HALSA_RS11485	SM00267	diguanylate cyclase
HALSA_RS11500	SM00248	ankyrin repeats
HALSA_RS11505	SM00798	AICARFT/IMPCHase bienzyme
HALSA_RS11505	SM00851	MGS-like domain
HALSA_RS11530	SM00998	Adenylosuccinate lyase C-terminus
HALSA_RS11535	SM01001	AIR carboxylase
HALSA_RS11545	SM01209	HALSA_RS11545
HALSA_RS11545	SM01210	HALSA_RS11545
HALSA_RS11560	SM00098	Alkaline phosphatase homologues
HALSA_RS11570	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS11570	SM00448	cheY-homologous receiver domain
HALSA_RS11575	SM00387	Histidine kinase-like ATPases
HALSA_RS11575	SM00388	His Kinase A (phosphoacceptor) domain
HALSA_RS11580	SM00062	Bacterial periplasmic substrate-binding proteins
HALSA_RS11600	SM01211	HALSA_RS11600
HALSA_RS11630	SM00481	DNA polymerase alpha chain like domain
HALSA_RS11645	SM00849	Metallo-beta-lactamase superfamily
HALSA_RS11700	SM00924	MgtE intracellular N domain
HALSA_RS11750	SM00861	Transketolase, pyrimidine binding domain
HALSA_RS11785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HALSA_RS11840	SM00450	Rhodanese Homology Domain
HALSA_RS11895	SM00966	SpoVT / AbrB like domain 
HALSA_RS11935	SM00267	diguanylate cyclase
HALSA_RS11945	SM00890	Domain of unknown function
HALSA_RS11965	SM00984	UDP binding domain
HALSA_RS12005	SM01209	HALSA_RS12005
HALSA_RS12005	SM01210	HALSA_RS12005
HALSA_RS12010	SM00788	Adenylosuccinate synthetase
HALSA_RS12015	SM00998	Adenylosuccinate lyase C-terminus
HALSA_RS12025	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS12070	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS12090	SM00354	helix_turn _helix lactose operon repressor
HALSA_RS12150	SM00028	Tetratricopeptide repeats
HALSA_RS12150	SM00671	Sel1-like repeats.
HALSA_RS12180	SM00470	ParB-like nuclease domain
HALSA_RS12190	SM00470	ParB-like nuclease domain
HALSA_RS12200	SM01228	HALSA_RS12200
HALSA_RS12210	SM00393	Putative single-stranded nucleic acids-binding domain
HALSA_RS12210	SM01245	HALSA_RS12210
HALSA_RS12220	SM01234	HALSA_RS12220
HALSA_RS12260	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12260	SM00091	PAS domain
HALSA_RS12260	SM00267	diguanylate cyclase
HALSA_RS12260	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12265	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12265	SM00091	PAS domain
HALSA_RS12265	SM00267	diguanylate cyclase
HALSA_RS12265	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12270	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12270	SM00091	PAS domain
HALSA_RS12270	SM00267	diguanylate cyclase
HALSA_RS12270	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12275	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12275	SM00091	PAS domain
HALSA_RS12275	SM00387	Histidine kinase-like ATPases
HALSA_RS12275	SM00388	His Kinase A (phosphoacceptor) domain
HALSA_RS12275	SM00448	cheY-homologous receiver domain
HALSA_RS12280	SM00267	diguanylate cyclase
HALSA_RS12295	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
HALSA_RS12295	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12295	SM00091	PAS domain
HALSA_RS12295	SM00267	diguanylate cyclase
HALSA_RS12295	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12305	SM00267	diguanylate cyclase
HALSA_RS12315	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12315	SM00091	PAS domain
HALSA_RS12315	SM00267	diguanylate cyclase
HALSA_RS12315	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12320	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12320	SM00091	PAS domain
HALSA_RS12320	SM00267	diguanylate cyclase
HALSA_RS12320	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12325	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
HALSA_RS12325	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12325	SM00091	PAS domain
HALSA_RS12325	SM00267	diguanylate cyclase
HALSA_RS12325	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12340	SM00267	diguanylate cyclase
HALSA_RS12345	SM00091	PAS domain
HALSA_RS12345	SM00267	diguanylate cyclase
HALSA_RS12345	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12350	SM00564	beta-propeller repeat
HALSA_RS12360	SM00506	Appr-1"-p processing enzyme
HALSA_RS12375	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS12380	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12390	SM00257	Lysin motif
HALSA_RS12415	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12415	SM00091	PAS domain
HALSA_RS12415	SM00267	diguanylate cyclase
HALSA_RS12415	SM00448	cheY-homologous receiver domain
HALSA_RS12415	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12420	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12420	SM00091	PAS domain
HALSA_RS12420	SM00267	diguanylate cyclase
HALSA_RS12420	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12425	SM00091	PAS domain
HALSA_RS12425	SM00267	diguanylate cyclase
HALSA_RS12425	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12440	SM00954	Region found in RelA / SpoT proteins
HALSA_RS12490	SM00091	PAS domain
HALSA_RS12490	SM00382	ATPases associated with a variety of cellular activities
HALSA_RS12495	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
HALSA_RS12495	SM00091	PAS domain
HALSA_RS12495	SM00267	diguanylate cyclase
HALSA_RS12520	SM00091	PAS domain
HALSA_RS12520	SM00267	diguanylate cyclase
HALSA_RS12520	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HALSA_RS12535	SM00014	Acid phosphatase homologues
