locus_tag old_locus_tag gene Name start end strand product note type ID NCBI 26147 28041 - mobile_genetic_element id-NC_054953.1:26147..28041 http://www.ncbi.nlm.nih.gov/gene/?term= KMC41_gp01 ChaoS9_425 terS terS 54915 55208 + terminase small subunit homolog of phiH1_485%2C of phiCh1_ORF98 and of Nmag_4250%3B this gene is complete%3B in the provirus state the DNA is circular%3B in virus particles%2C the linear double-stranded DNA is terminally redundant due to the headful packaging mechanism%3B terminase small subunit TerS gene gene-KMC41_gp01 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp01 KMC41_gp02 ChaoS9_005 KMC41_gp02 100 669 + HTH domain protein homolog of phiH1_005%2C of phiCh1_ORF1 and of Nmag_4251 gene gene-KMC41_gp02 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp02 KMC41_gp03 ChaoS9_010 terL terL 656 2302 + terminase large subunit terminase large subunit TerL gene gene-KMC41_gp03 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp03 KMC41_gp04 ChaoS9_015 por por 2316 3944 + portal protein portal protein Por gene gene-KMC41_gp04 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp04 KMC41_gp05 ChaoS9_020 KMC41_gp05 3937 4083 + CxxC motif protein gene gene-KMC41_gp05 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp05 KMC41_gp06 ChaoS9_025 KMC41_gp06 4086 5273 + putative head assembly protein putative head assembly protein%2C SPP1_gp7 family gene gene-KMC41_gp06 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp06 KMC41_gp07 ChaoS9_030 KMC41_gp07 5384 7300 + putative prohead protease protein gene gene-KMC41_gp07 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp07 KMC41_gp08 ChaoS9_035 KMC41_gp08 7303 7755 + uncharacterized protein gene gene-KMC41_gp08 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp08 KMC41_gp09 ChaoS9_040 KMC41_gp09 7801 8928 + major capsid protein major capsid protein MCP gene gene-KMC41_gp09 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp09 KMC41_gp10 ChaoS9_045 KMC41_gp10 8944 9363 + uncharacterized protein homolog of phiH1_050%2C of phiCh1_ORF12 and of Nmag_4261 gene gene-KMC41_gp10 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp10 KMC41_gp11 ChaoS9_050 KMC41_gp11 9398 9784 + uncharacterized protein gene gene-KMC41_gp11 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp11 KMC41_gp12 ChaoS9_055 hco hco 9781 10191 + head closure protein%2C type 1 homolog of phiH1_060%2C of phiCh1_ORF14 and of Nmag_4263%3B head closure protein Hco%2C type 1 gene gene-KMC41_gp12 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp12 KMC41_gp13 ChaoS9_060 KMC41_gp13 10188 10421 + uncharacterized protein gene gene-KMC41_gp13 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp13 KMC41_gp14 ChaoS9_065 KMC41_gp14 10414 10701 + uncharacterized protein homolog of phiH1_065%2C of phiCh1_ORF15 and of Nmag_4264 gene gene-KMC41_gp14 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp14 KMC41_gp15 ChaoS9_070 nep nep 10703 11149 + putative neck protein%2C type 1 homolog of phiH1_070%2C of phiCh1_ORF16. and of Nmag_4265%3B putative neck protein Nep%2C type 1 gene gene-KMC41_gp15 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp15 KMC41_gp16 ChaoS9_075 tco tco 11156 11746 + tail completion protein%2C type 1 homolog of phiH1_075%2C of phiCh1_ORF17 and of Nmag_4266%3B tail completion protein Tco%2C type 1 gene gene-KMC41_gp16 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp16 KMC41_gp17 ChaoS9_080 KMC41_gp17 11767 13071 + tail sheath protein homolog of phiH1_080%2C of phiCh1_ORF18 and of Nmag_4267 gene gene-KMC41_gp17 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp17 KMC41_gp18 ChaoS9_085 KMC41_gp18 13082 13480 + putative tail tube protein homolog of phiH1_085%2C of phiCh1_ORF19 and of Nmag_4268 gene gene-KMC41_gp18 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp18 KMC41_gp19 ChaoS9_090 KMC41_gp19 13492 13932 + uncharacterized protein homolog of phiH1_090%2C of phiCh1_ORF20 and of Nmag_4269 gene gene-KMC41_gp19 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp19 KMC41_gp20 ChaoS9_095 KMC41_gp20 13935 14144 + uncharacterized protein gene gene-KMC41_gp20 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp20 KMC41_gp21 ChaoS9_100 tpm tpm 14147 16891 + tape-measure tail protein homolog of phiH1_100%2C of phiCh1_ORF22+ORF23 and of Nmag_4272%3B tape-measure tail protein Tpm gene gene-KMC41_gp21 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp21 KMC41_gp22 ChaoS9_105 KMC41_gp22 16895 17422 + uncharacterized protein homolog of phiH1_105%2C of phiCh1_ORF24 and of Nmag_4273 gene gene-KMC41_gp22 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp22 KMC41_gp23 ChaoS9_110 KMC41_gp23 17423 17767 + uncharacterized protein homolog of phiH1_110%2C of phiCh1_ORF25 and of Nmag_4274 gene gene-KMC41_gp23 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp23 KMC41_gp24 ChaoS9_115 KMC41_gp24 17771 18604 + uncharacterized protein homolog of phiH1_115%2C of phiCh1_ORF26+ORF27 and of Nmag_4275 gene gene-KMC41_gp24 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp24 KMC41_gp25 ChaoS9_120 KMC41_gp25 18644 18787 + CxxC motif protein homolog of phiH1_120 gene gene-KMC41_gp25 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp25 KMC41_gp26 ChaoS9_125 KMC41_gp26 18784 19335 + uncharacterized protein homolog of phiH1_125%2C of phiCh1_ORF28 and of Nmag_4276 gene gene-KMC41_gp26 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp26 KMC41_gp27 ChaoS9_130 KMC41_gp27 19338 19700 + hypothetical protein homolog of phiH1_135%3B virus-related protein gene gene-KMC41_gp27 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp27 KMC41_gp28 ChaoS9_135 KMC41_gp28 19697 20062 + uncharacterized protein homolog of phiH1_140%2C of phiCh1_ORF29 and of Nmag_4277 gene gene-KMC41_gp28 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp28 KMC41_gp29 ChaoS9_140 bpj bpj 20069 21328 + baseplate J family protein homolog of phiH1_145%2C of phiCh1_ORF30 and of Nmag_4278%3B baseplate J family protein Bpj gene gene-KMC41_gp29 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp29 KMC41_gp30 ChaoS9_145 KMC41_gp30 21321 21929 + uncharacterized protein homolog of phiH1_150%2C of phiCh1_ORF31 and of Nmag_4279 gene gene-KMC41_gp30 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp30 KMC41_gp31 ChaoS9_150 KMC41_gp31 21933 22517 + uncharacterized protein homolog of phiCh1_ORF32 and of Nmag_4280 gene gene-KMC41_gp31 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp31 KMC41_gp32 ChaoS9_155 KMC41_gp32 22514 23122 + uncharacterized protein homolog of phiCh1_ORF33 and of Nmag_4281 gene gene-KMC41_gp32 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp32 KMC41_gp33 ChaoS9_160 KMC41_gp33 23115 24698 + repeat-containing tail fiber protein homolog of phiH1_165+PhiH1_185%2C of phiCh1_ORF34+ORF36 and of Nmag_4282+Nmag_4286 gene gene-KMC41_gp33 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp33 KMC41_gp34 ChaoS9_165 KMC41_gp34 24702 24986 + uncharacterized protein homolog of phiH1_180+PhiH1_170 and of Nmag_4283+Nmag_4285 gene gene-KMC41_gp34 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp34 KMC41_gp35 ChaoS9_170 int1 int1 25024 25698 + tyrosine integrase/recombinase homolog of phiH1_175%2C of phiCh1_ORF35 and of Nmag_4284%3B tyrosine integrase/recombinase Int1 gene gene-KMC41_gp35 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp35 KMC41_gp36 ChaoS9_175 KMC41_gp36 25709 25996 - uncharacterized protein homolog of phiH1_180+PhiH1_170 and of Nmag_4283+Nmag_4285 gene gene-KMC41_gp36 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp36 KMC41_gp37 ChaoS9_180 KMC41_gp37 25999 26146 - nonfunctional%3B disrupted by transposon insertion%3B this is the C-terminal part of a gene targeted by ISH12%3B the N-terminal part is ChaoS9_195 pseudogene gene-KMC41_gp37 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp37 KMC41_gp38 ChaoS9_185 tnpB tnpB 26199 27455 - IS1341-type transposase IS1341-type transposase TnpB gene gene-KMC41_gp38 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp38 KMC41_gp39 ChaoS9_190 tnpA tnpA 27457 27849 - IS200-type transposase IS200-type transposase TnpA gene gene-KMC41_gp39 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp39 KMC41_gp40 ChaoS9_195 KMC41_gp40 28042 28820 - nonfunctional%3B disrupted by transposon insertion%3B homolog of phiH1_165+PhiH1_185%2C of phiCh1_ORF34+ORF36 and of Nmag_4282+Nmag_4286%3B this is the C-terminal part of a gene targeted by ISH12%3B the C-terminal part is ChaoS9_180 pseudogene gene-KMC41_gp40 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp40 KMC41_gp41 ChaoS9_200 KMC41_gp41 28854 29579 + transmembrane domain protein homolog of phiCh1_ORF37 and of Nmag_4287 gene gene-KMC41_gp41 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp41 KMC41_gp42 ChaoS9_205 KMC41_gp42 29589 29861 - HTH domain protein homolog of phiCh1_ORF38 and of Nmag_4288 gene gene-KMC41_gp42 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp42 KMC41_gp43 ChaoS9_210 KMC41_gp43 29933 30241 - uncharacterized protein homolog of phiH1_220%2C of phiCh1_ORF39 and of Nmag_4289 gene gene-KMC41_gp43 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp43 KMC41_gp44 ChaoS9_215 KMC41_gp44 30238 30813 - glutamine amidotransferase domain protein%2C class-II homolog of phiCh1_ORF40. and of Nmag_4290 gene gene-KMC41_gp44 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp44 KMC41_gp45 ChaoS9_220 KMC41_gp45 30818 31891 - uncharacterized protein homolog of phiCh1_ORF41+ORF42 and of Nmag_4291 gene gene-KMC41_gp45 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp45 KMC41_gp46 ChaoS9_225 KMC41_gp46 32030 32266 + uncharacterized protein gene gene-KMC41_gp46 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp46 KMC41_gp47 ChaoS9_230 KMC41_gp47 32339 32584 + uncharacterized protein homolog of phiH1_225 gene gene-KMC41_gp47 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp47 KMC41_gp48 ChaoS9_235 KMC41_gp48 32581 33009 + VapC family toxin gene gene-KMC41_gp48 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp48 KMC41_gp49 ChaoS9_240 KMC41_gp49 33098 33448 + uncharacterized protein homolog of phiH1_250 and of Nmag_4297 gene gene-KMC41_gp49 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp49 KMC41_gp50 ChaoS9_245 int2 int2 33457 34059 - tyrosine integrase/recombinase homolog of phiH1_240%2C of phiCh1_ORF45 and of Nmag_4294%3B tyrosine integrase/recombinase Int2 gene gene-KMC41_gp50 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp50 KMC41_gp51 ChaoS9_250 KMC41_gp51 34241 34432 - uncharacterized protein gene gene-KMC41_gp51 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp51 KMC41_gp52 ChaoS9_255 KMC41_gp52 34507 35055 - uncharacterized protein homolog of phiH1_255%2C of phiCh1_ORF47 and of Nmag_4296 gene gene-KMC41_gp52 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp52 KMC41_gp53 ChaoS9_260 parA parA 35048 35902 - plasmid partition protein homolog of phiH1_265%2C of phiCh1_ORF46 and of Nmag_4295%3B plasmid partition protein ParA gene gene-KMC41_gp53 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp53 KMC41_gp54 ChaoS9_265 KMC41_gp54 35976 36440 - transmembrane domain protein homolog of phiH1_210 gene gene-KMC41_gp54 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp54 KMC41_gp55 ChaoS9_270 KMC41_gp55 36460 38241 - uncharacterized protein gene gene-KMC41_gp55 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp55 KMC41_gp56 ChaoS9_275 KMC41_gp56 38243 38857 - uncharacterized protein gene gene-KMC41_gp56 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp56 KMC41_gp57 ChaoS9_280 KMC41_gp57 38850 39080 - uncharacterized protein gene gene-KMC41_gp57 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp57 KMC41_gp58 ChaoS9_285 KMC41_gp58 39073 39240 - transmembrane domain protein gene gene-KMC41_gp58 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp58 KMC41_gp59 ChaoS9_290 KMC41_gp59 39233 40492 - uncharacterized protein gene gene-KMC41_gp59 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp59 KMC41_gp60 ChaoS9_295 KMC41_gp60 40485 40673 - CxxC motif protein gene gene-KMC41_gp60 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp60 KMC41_gp61 ChaoS9_300 KMC41_gp61 40663 41181 - uncharacterized protein gene gene-KMC41_gp61 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp61 KMC41_gp62 ChaoS9_305 KMC41_gp62 41174 41611 - HNH-type endonuclease / MarR family transcription regulator gene gene-KMC41_gp62 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp62 KMC41_gp63 ChaoS9_310 KMC41_gp63 41613 41870 - HTH domain protein gene gene-KMC41_gp63 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp63 KMC41_gp64 ChaoS9_315 KMC41_gp64 41997 42602 + uncharacterized protein gene gene-KMC41_gp64 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp64 KMC41_gp65 ChaoS9_320 KMC41_gp65 42605 43051 + uncharacterized protein gene gene-KMC41_gp65 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp65 KMC41_gp66 ChaoS9_325 KMC41_gp66 43044 43250 + uncharacterized protein gene gene-KMC41_gp66 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp66 KMC41_gp67 ChaoS9_330 KMC41_gp67 43250 43621 + uncharacterized protein gene gene-KMC41_gp67 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp67 KMC41_gp68 ChaoS9_335 KMC41_gp68 43621 44127 + uncharacterized protein gene gene-KMC41_gp68 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp68 KMC41_gp69 ChaoS9_340 KMC41_gp69 44124 44255 + CxxC motif protein gene gene-KMC41_gp69 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp69 KMC41_gp70 ChaoS9_345 orc1 orc1 44342 45400 + Orc1-type DNA replication protein gene gene-KMC41_gp70 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp70 KMC41_gp71 ChaoS9_350 KMC41_gp71 45482 45709 - uncharacterized protein gene gene-KMC41_gp71 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp71 KMC41_gp72 ChaoS9_355 KMC41_gp72 45837 45992 + uncharacterized protein gene gene-KMC41_gp72 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp72 KMC41_gp73 ChaoS9_360 KMC41_gp73 46369 46905 + uncharacterized protein homolog of phiCh1_ORF64 and of Nmag_4216 gene gene-KMC41_gp73 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp73 KMC41_gp74 ChaoS9_365 KMC41_gp74 46902 47177 + uncharacterized protein gene gene-KMC41_gp74 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp74 KMC41_gp75 ChaoS9_370 KMC41_gp75 47179 47979 + zinc-finger domain protein gene gene-KMC41_gp75 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp75 KMC41_gp76 ChaoS9_375 KMC41_gp76 47976 48068 + uncharacterized protein gene gene-KMC41_gp76 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp76 KMC41_gp77 ChaoS9_380 KMC41_gp77 48065 48397 + uncharacterized protein gene gene-KMC41_gp77 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp77 KMC41_gp78 ChaoS9_385 repH repH 48394 51690 + plasmid replication protein homolog of phiH1_285%2C of phiCh1_ORF54 and of Nmag_4299%3B plasmid replication protein RepH gene gene-KMC41_gp78 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp78 KMC41_gp79 ChaoS9_390 KMC41_gp79 51683 51925 + MarR family transcription regulator gene gene-KMC41_gp79 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp79 KMC41_gp80 ChaoS9_395 KMC41_gp80 51932 52591 + CxxC motif protein gene gene-KMC41_gp80 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp80 KMC41_gp81 ChaoS9_420 KMC41_gp81 54734 54922 + CxxC motif protein homolog of phiH1_480%2C of phiCh1_ORF97 and of Nmag_4249 gene gene-KMC41_gp81 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp81 KMC41_gp82 ChaoS9_415 KMC41_gp82 54460 54705 + DUF217 domain protein homolog of phiCh1_ORF96 and of Nmag_4248 gene gene-KMC41_gp82 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp82 KMC41_gp83 ChaoS9_410 KMC41_gp83 53766 54455 + uncharacterized protein gene gene-KMC41_gp83 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp83 KMC41_gp84 ChaoS9_405 KMC41_gp84 53446 53769 + transmembrane domain protein homolog of phiH1_465%2C of phiCh1_ORF93 and of Nmag_4245 gene gene-KMC41_gp84 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp84 KMC41_gp85 ChaoS9_400 KMC41_gp85 53208 53453 + transmembrane domain protein homolog of phiH1_460%2C of phiCh1_ORF92 and of Nmag_4244 gene gene-KMC41_gp85 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gp85 KMC41_gt01 ChaoS9_TRNA1 KMC41_gt01 53106 53181 + tRNA-Arg anticodon CGA tRNA gene-KMC41_gt01 http://www.ncbi.nlm.nih.gov/gene/?term=KMC41_gt01