locus-tag class description FDY98_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain FDY98_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain FDY98_RS00010 PF02767 DNA polymerase III beta subunit, central domain FDY98_RS00015 PF02463 RecF/RecN/SMC N terminal domain FDY98_RS00020 PF00204 DNA gyrase B FDY98_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus FDY98_RS00020 PF18053 DNA gyrase B subunit insert domain FDY98_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS00020 PF01751 Toprim domain FDY98_RS00030 PF02092 Glycyl-tRNA synthetase beta subunit FDY98_RS00030 PF05746 DALR anticodon binding domain FDY98_RS00035 PF02091 Glycyl-tRNA synthetase alpha subunit FDY98_RS00050 PF00884 Sulfatase FDY98_RS00060 PF13439 Glycosyltransferase Family 4 FDY98_RS00060 PF00534 Glycosyl transferases group 1 FDY98_RS00065 PF00535 Glycosyl transferase family 2 FDY98_RS00070 PF13439 Glycosyltransferase Family 4 FDY98_RS00070 PF00534 Glycosyl transferases group 1 FDY98_RS00075 PF01501 Glycosyl transferase family 8 FDY98_RS00080 PF04932 O-Antigen ligase FDY98_RS00095 PF00294 pfkB family carbohydrate kinase FDY98_RS00095 PF01467 Cytidylyltransferase-like FDY98_RS00100 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FDY98_RS00110 PF00585 C-terminal regulatory domain of Threonine dehydratase FDY98_RS00110 PF00291 Pyridoxal-phosphate dependent enzyme FDY98_RS00115 PF01812 5-formyltetrahydrofolate cyclo-ligase family FDY98_RS00125 PF05164 Cell division protein ZapA FDY98_RS00135 PF00557 Metallopeptidase family M24 FDY98_RS00135 PF05195 Aminopeptidase P, N-terminal domain FDY98_RS00140 PF01494 FAD binding domain FDY98_RS00145 PF01494 FAD binding domain FDY98_RS00150 PF13180 PDZ domain FDY98_RS00150 PF03572 Peptidase family S41 FDY98_RS00155 PF01551 Peptidase family M23 FDY98_RS00165 PF00581 Rhodanese-like domain FDY98_RS00170 PF02556 Preprotein translocase subunit SecB FDY98_RS00175 PF04452 RNA methyltransferase FDY98_RS00185 PF00474 Sodium:solute symporter family FDY98_RS00190 PF17783 CvfB-like winged helix domain FDY98_RS00190 PF13509 S1 domain FDY98_RS00195 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FDY98_RS00195 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FDY98_RS00200 PF02622 Uncharacterized ACR, COG1678 FDY98_RS00205 PF03652 Holliday junction resolvase FDY98_RS00210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FDY98_RS00210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FDY98_RS00230 PF01966 HD domain FDY98_RS00240 PF01253 Translation initiation factor SUI1 FDY98_RS00245 PF13419 Haloacid dehalogenase-like hydrolase FDY98_RS00290 PF00438 S-adenosylmethionine synthetase, N-terminal domain FDY98_RS00290 PF02772 S-adenosylmethionine synthetase, central domain FDY98_RS00290 PF02773 S-adenosylmethionine synthetase, C-terminal domain FDY98_RS00295 PF03120 NAD-dependent DNA ligase OB-fold domain FDY98_RS00295 PF01653 NAD-dependent DNA ligase adenylation domain FDY98_RS00305 PF02219 Methylenetetrahydrofolate reductase FDY98_RS00325 PF01432 Peptidase family M3 FDY98_RS00330 PF00209 Sodium:neurotransmitter symporter family FDY98_RS00335 PF00132 Bacterial transferase hexapeptide (six repeats) FDY98_RS00345 PF02954 Bacterial regulatory protein, Fis family FDY98_RS00345 PF00158 Sigma-54 interaction domain FDY98_RS00345 PF00072 Response regulator receiver domain FDY98_RS00350 PF02743 Cache domain FDY98_RS00350 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS00355 PF07729 FCD domain FDY98_RS00355 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS00360 PF01070 FMN-dependent dehydrogenase FDY98_RS00410 PF00460 Flagella basal body rod protein FDY98_RS00415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDY98_RS00415 PF00460 Flagella basal body rod protein FDY98_RS00425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDY98_RS00425 PF07559 Flagellar basal body protein FlaE FDY98_RS00425 PF00460 Flagella basal body rod protein FDY98_RS00430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDY98_RS00430 PF00460 Flagella basal body rod protein FDY98_RS00435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDY98_RS00435 PF00460 Flagella basal body rod protein FDY98_RS00440 PF02107 Flagellar L-ring protein FDY98_RS00445 PF02119 Flagellar P-ring protein FDY98_RS00450 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FDY98_RS00450 PF10135 Rod binding protein FDY98_RS00455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FDY98_RS00455 PF00460 Flagella basal body rod protein FDY98_RS00470 PF01313 Bacterial export proteins, family 3 FDY98_RS00475 PF00813 FliP family FDY98_RS00480 PF04347 Flagellar biosynthesis protein, FliO FDY98_RS00505 PF02050 Flagellar FliJ protein FDY98_RS00510 PF18269 T3SS EscN ATPase C-terminal domain FDY98_RS00510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDY98_RS00525 PF08345 Flagellar M-ring protein C-terminal FDY98_RS00525 PF01514 Secretory protein of YscJ/FliF family FDY98_RS00530 PF02049 Flagellar hook-basal body complex protein FliE FDY98_RS00535 PF03646 FlaG protein FDY98_RS00545 PF02561 Flagellar protein FliS FDY98_RS00560 PF01312 FlhB HrpN YscU SpaS Family FDY98_RS00565 PF05247 Flagellar transcriptional activator (FlhD) FDY98_RS00570 PF05280 Flagellar transcriptional activator (FlhC) FDY98_RS00575 PF01618 MotA/TolQ/ExbB proton channel family FDY98_RS00580 PF00691 OmpA family FDY98_RS00580 PF13677 Membrane MotB of proton-channel complex MotA/MotB FDY98_RS00585 PF01584 CheW-like domain FDY98_RS00585 PF01627 Hpt domain FDY98_RS00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS00585 PF02895 Signal transducing histidine kinase, homodimeric domain FDY98_RS00585 PF09078 CheY binding FDY98_RS00590 PF01584 CheW-like domain FDY98_RS00600 PF02203 Tar ligand binding domain homologue FDY98_RS00600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS00600 PF00672 HAMP domain FDY98_RS00610 PF01339 CheB methylesterase FDY98_RS00610 PF00072 Response regulator receiver domain FDY98_RS00615 PF02203 Tar ligand binding domain homologue FDY98_RS00615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS00615 PF00672 HAMP domain FDY98_RS00620 PF00072 Response regulator receiver domain FDY98_RS00625 PF04344 Chemotaxis phosphatase, CheZ FDY98_RS00630 PF01312 FlhB HrpN YscU SpaS Family FDY98_RS00635 PF00771 FHIPEP family FDY98_RS00640 PF00448 SRP54-type protein, GTPase domain FDY98_RS00655 PF04545 Sigma-70, region 4 FDY98_RS00655 PF04539 Sigma-70 region 3 FDY98_RS00655 PF04542 Sigma-70 region 2 FDY98_RS00690 PF00325 Bacterial regulatory proteins, crp family FDY98_RS00690 PF00027 Cyclic nucleotide-binding domain FDY98_RS00705 PF00436 Single-strand binding protein family FDY98_RS00775 PF00106 short chain dehydrogenase FDY98_RS00785 PF03441 FAD binding domain of DNA photolyase FDY98_RS00785 PF00875 DNA photolyase FDY98_RS00795 PF08338 Domain of unknown function (DUF1731) FDY98_RS00795 PF01370 NAD dependent epimerase/dehydratase family FDY98_RS00800 PF18337 RapA N-terminal Tudor like domain FDY98_RS00800 PF00271 Helicase conserved C-terminal domain FDY98_RS00800 PF12137 RNA polymerase recycling family C-terminal FDY98_RS00800 PF18339 RapA N-terminal Tudor like domain 1 FDY98_RS00800 PF00176 SNF2 family N-terminal domain FDY98_RS00805 PF00578 AhpC/TSA family FDY98_RS00815 PF13458 Periplasmic binding protein FDY98_RS00820 PF02661 Fic/DOC family FDY98_RS00820 PF13784 Fic/DOC family N-terminal FDY98_RS00830 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS00835 PF00005 ABC transporter FDY98_RS00840 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDY98_RS00840 PF00005 ABC transporter FDY98_RS00855 PF02237 Biotin protein ligase C terminal domain FDY98_RS00855 PF03099 Biotin/lipoate A/B protein ligase family FDY98_RS00855 PF08279 HTH domain FDY98_RS00860 PF03309 Type III pantothenate kinase FDY98_RS00885 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FDY98_RS00890 PF02357 Transcription termination factor nusG FDY98_RS00890 PF00467 KOW motif FDY98_RS00895 PF00298 Ribosomal protein L11, RNA binding domain FDY98_RS00895 PF03946 Ribosomal protein L11, N-terminal domain FDY98_RS00900 PF00687 Ribosomal protein L1p/L10e family FDY98_RS00905 PF00466 Ribosomal protein L10 FDY98_RS00910 PF16320 Ribosomal protein L7/L12 dimerisation domain FDY98_RS00910 PF00542 Ribosomal protein L7/L12 C-terminal domain FDY98_RS00915 PF04565 RNA polymerase Rpb2, domain 3 FDY98_RS00915 PF00562 RNA polymerase Rpb2, domain 6 FDY98_RS00915 PF04563 RNA polymerase beta subunit FDY98_RS00915 PF04561 RNA polymerase Rpb2, domain 2 FDY98_RS00915 PF10385 RNA polymerase beta subunit external 1 domain FDY98_RS00915 PF04560 RNA polymerase Rpb2, domain 7 FDY98_RS00920 PF04998 RNA polymerase Rpb1, domain 5 FDY98_RS00920 PF05000 RNA polymerase Rpb1, domain 4 FDY98_RS00920 PF04997 RNA polymerase Rpb1, domain 1 FDY98_RS00920 PF04983 RNA polymerase Rpb1, domain 3 FDY98_RS00920 PF00623 RNA polymerase Rpb1, domain 2 FDY98_RS00925 PF00164 Ribosomal protein S12/S23 FDY98_RS00930 PF00177 Ribosomal protein S7p/S5e FDY98_RS00940 PF14492 Elongation Factor G, domain II FDY98_RS00940 PF03764 Elongation factor G, domain IV FDY98_RS00940 PF00009 Elongation factor Tu GTP binding domain FDY98_RS00940 PF03144 Elongation factor Tu domain 2 FDY98_RS00940 PF00679 Elongation factor G C-terminus FDY98_RS00945 PF03143 Elongation factor Tu C-terminal domain FDY98_RS00945 PF03144 Elongation factor Tu domain 2 FDY98_RS00945 PF00009 Elongation factor Tu GTP binding domain FDY98_RS00950 PF00338 Ribosomal protein S10p/S20e FDY98_RS00955 PF00297 Ribosomal protein L3 FDY98_RS00960 PF00573 Ribosomal protein L4/L1 family FDY98_RS00965 PF00276 Ribosomal protein L23 FDY98_RS00970 PF03947 Ribosomal Proteins L2, C-terminal domain FDY98_RS00970 PF00181 Ribosomal Proteins L2, RNA binding domain FDY98_RS00980 PF00237 Ribosomal protein L22p/L17e FDY98_RS00995 PF00831 Ribosomal L29 protein FDY98_RS01000 PF00366 Ribosomal protein S17 FDY98_RS01010 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FDY98_RS01010 PF00467 KOW motif FDY98_RS01015 PF00673 ribosomal L5P family C-terminus FDY98_RS01015 PF00281 Ribosomal protein L5 FDY98_RS01020 PF00253 Ribosomal protein S14p/S29e FDY98_RS01025 PF00410 Ribosomal protein S8 FDY98_RS01030 PF00347 Ribosomal protein L6 FDY98_RS01035 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FDY98_RS01040 PF03719 Ribosomal protein S5, C-terminal domain FDY98_RS01040 PF00333 Ribosomal protein S5, N-terminal domain FDY98_RS01045 PF00327 Ribosomal protein L30p/L7e FDY98_RS01050 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FDY98_RS01055 PF00344 SecY translocase FDY98_RS01060 PF00444 Ribosomal protein L36 FDY98_RS01065 PF00416 Ribosomal protein S13/S18 FDY98_RS01070 PF00411 Ribosomal protein S11 FDY98_RS01075 PF01479 S4 domain FDY98_RS01075 PF00163 Ribosomal protein S4/S9 N-terminal domain FDY98_RS01085 PF01196 Ribosomal protein L17 FDY98_RS01090 PF00768 D-alanyl-D-alanine carboxypeptidase FDY98_RS01090 PF07943 Penicillin-binding protein 5, C-terminal domain FDY98_RS01095 PF00892 EamA-like transporter family FDY98_RS01120 PF02581 Thiamine monophosphate synthase FDY98_RS01135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDY98_RS01150 PF00144 Beta-lactamase FDY98_RS01155 PF03466 LysR substrate binding domain FDY98_RS01155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS01170 PF00005 ABC transporter FDY98_RS01200 PF09344 CT1975-like protein FDY98_RS01205 PF09704 CRISPR-associated protein (Cas_Cas5) FDY98_RS01210 PF08798 CRISPR associated protein FDY98_RS01215 PF01867 CRISPR associated protein Cas1 FDY98_RS01220 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) FDY98_RS01230 PF01435 Peptidase family M48 FDY98_RS01255 PF00120 Glutamine synthetase, catalytic domain FDY98_RS01255 PF03951 Glutamine synthetase, beta-Grasp domain FDY98_RS01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS01265 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS01265 PF00989 PAS fold FDY98_RS01270 PF00072 Response regulator receiver domain FDY98_RS01270 PF00158 Sigma-54 interaction domain FDY98_RS01270 PF02954 Bacterial regulatory protein, Fis family FDY98_RS01285 PF08085 Entericidin EcnA/B family FDY98_RS01290 PF01569 PAP2 superfamily FDY98_RS01295 PF00534 Glycosyl transferases group 1 FDY98_RS01295 PF13439 Glycosyltransferase Family 4 FDY98_RS01300 PF13609 Gram-negative porin FDY98_RS01305 PF02872 5'-nucleotidase, C-terminal domain FDY98_RS01305 PF00149 Calcineurin-like phosphoesterase FDY98_RS01310 PF07237 Protein of unknown function (DUF1428) FDY98_RS01315 PF03795 YCII-related domain FDY98_RS01325 PF03466 LysR substrate binding domain FDY98_RS01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS01330 PF00248 Aldo/keto reductase family FDY98_RS01345 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS01350 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS01355 PF13416 Bacterial extracellular solute-binding protein FDY98_RS01360 PF01546 Peptidase family M20/M25/M40 FDY98_RS01360 PF07687 Peptidase dimerisation domain FDY98_RS01365 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS01380 PF03737 Aldolase/RraA FDY98_RS01385 PF03466 LysR substrate binding domain FDY98_RS01385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS01395 PF02810 SEC-C motif FDY98_RS01400 PF01541 GIY-YIG catalytic domain FDY98_RS01405 PF00850 Histone deacetylase domain FDY98_RS01430 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS01445 PF12833 Helix-turn-helix domain FDY98_RS01450 PF18081 Fanconi anemia-associated nuclease SAP domain FDY98_RS01450 PF08774 VRR-NUC domain FDY98_RS01465 PF07690 Major Facilitator Superfamily FDY98_RS01470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDY98_RS01470 PF13378 Enolase C-terminal domain-like FDY98_RS01475 PF00465 Iron-containing alcohol dehydrogenase FDY98_RS01480 PF00171 Aldehyde dehydrogenase family FDY98_RS01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS01485 PF03466 LysR substrate binding domain FDY98_RS01490 PF03466 LysR substrate binding domain FDY98_RS01490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS01500 PF00557 Metallopeptidase family M24 FDY98_RS01515 PF00348 Polyprenyl synthetase FDY98_RS01520 PF00829 Ribosomal prokaryotic L21 protein FDY98_RS01525 PF01016 Ribosomal L27 protein FDY98_RS01530 PF01018 GTP1/OBG FDY98_RS01530 PF01926 50S ribosome-binding GTPase FDY98_RS01535 PF01472 PUA domain FDY98_RS01535 PF00696 Amino acid kinase family FDY98_RS01585 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS01590 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS01640 PF00563 EAL domain FDY98_RS01640 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS01640 PF03707 Bacterial signalling protein N terminal repeat FDY98_RS01645 PF03600 Citrate transporter FDY98_RS01665 PF01699 Sodium/calcium exchanger protein FDY98_RS01670 PF00313 'Cold-shock' DNA-binding domain FDY98_RS01675 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment FDY98_RS01690 PF00324 Amino acid permease FDY98_RS01695 PF00795 Carbon-nitrogen hydrolase FDY98_RS01715 PF01638 HxlR-like helix-turn-helix FDY98_RS01725 PF04945 YHS domain FDY98_RS01750 PF08447 PAS fold FDY98_RS01750 PF00989 PAS fold FDY98_RS01750 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS01750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS01790 PF01668 SmpB protein FDY98_RS01795 PF03364 Polyketide cyclase / dehydrase and lipid transport FDY98_RS01800 PF03658 RnfH family Ubiquitin FDY98_RS01805 PF04355 SmpA / OmlA family FDY98_RS01810 PF01475 Ferric uptake regulator family FDY98_RS01815 PF02463 RecF/RecN/SMC N terminal domain FDY98_RS01820 PF01025 GrpE FDY98_RS01830 PF00226 DnaJ domain FDY98_RS01830 PF01556 DnaJ C terminal domain FDY98_RS01830 PF00684 DnaJ central domain FDY98_RS01835 PF00892 EamA-like transporter family FDY98_RS01840 PF00005 ABC transporter FDY98_RS01845 PF01032 FecCD transport family FDY98_RS01865 PF00117 Glutamine amidotransferase class-I FDY98_RS01865 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FDY98_RS01870 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FDY98_RS01870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FDY98_RS01870 PF02142 MGS-like domain FDY98_RS01875 PF01272 Transcription elongation factor, GreA/GreB, C-term FDY98_RS01875 PF03449 Transcription elongation factor, N-terminal FDY98_RS01880 PF01985 CRS1 / YhbY (CRM) domain FDY98_RS01895 PF00809 Pterin binding enzyme FDY98_RS01905 PF00121 Triosephosphate isomerase FDY98_RS01910 PF03840 Preprotein translocase SecG subunit FDY98_RS01925 PF02576 RimP N-terminal domain FDY98_RS01925 PF17384 RimP C-terminal SH3 domain FDY98_RS01930 PF00575 S1 RNA binding domain FDY98_RS01930 PF08529 NusA N-terminal domain FDY98_RS01930 PF13184 NusA-like KH domain FDY98_RS01935 PF11987 Translation-initiation factor 2 FDY98_RS01935 PF00009 Elongation factor Tu GTP binding domain FDY98_RS01935 PF08364 Bacterial translation initiation factor IF-2 associated region FDY98_RS01935 PF04760 Translation initiation factor IF-2, N-terminal region FDY98_RS01940 PF02033 Ribosome-binding factor A FDY98_RS01945 PF01509 TruB family pseudouridylate synthase (N terminal domain) FDY98_RS01945 PF16198 tRNA pseudouridylate synthase B C-terminal domain FDY98_RS01945 PF09157 Pseudouridine synthase II TruB, C-terminal FDY98_RS01950 PF00312 Ribosomal protein S15 FDY98_RS01955 PF00575 S1 RNA binding domain FDY98_RS01955 PF01138 3' exoribonuclease family, domain 1 FDY98_RS01955 PF00013 KH domain FDY98_RS01955 PF03725 3' exoribonuclease family, domain 2 FDY98_RS01955 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FDY98_RS01965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS01965 PF03466 LysR substrate binding domain FDY98_RS01970 PF01063 Amino-transferase class IV FDY98_RS01985 PF02515 CoA-transferase family III FDY98_RS02000 PF02261 Aspartate decarboxylase FDY98_RS02005 PF02569 Pantoate-beta-alanine ligase FDY98_RS02010 PF02548 Ketopantoate hydroxymethyltransferase FDY98_RS02020 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FDY98_RS02025 PF01743 Poly A polymerase head domain FDY98_RS02025 PF12626 Polymerase A arginine-rich C-terminus FDY98_RS02025 PF12627 Probable RNA and SrmB- binding site of polymerase A FDY98_RS02030 PF00072 Response regulator receiver domain FDY98_RS02030 PF02954 Bacterial regulatory protein, Fis family FDY98_RS02030 PF00158 Sigma-54 interaction domain FDY98_RS02040 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDY98_RS02045 PF01258 Prokaryotic dksA/traR C4-type zinc finger FDY98_RS02055 PF17746 SfsA N-terminal OB domain FDY98_RS02055 PF03749 Sugar fermentation stimulation protein RE domain FDY98_RS02065 PF07021 Methionine biosynthesis protein MetW FDY98_RS02065 PF00561 alpha/beta hydrolase fold FDY98_RS02070 PF00561 alpha/beta hydrolase fold FDY98_RS02075 PF02325 YGGT family FDY98_RS02080 PF03807 NADP oxidoreductase coenzyme F420-dependent FDY98_RS02080 PF14748 Pyrroline-5-carboxylate reductase dimerisation FDY98_RS02085 PF01168 Alanine racemase, N-terminal domain FDY98_RS02090 PF00437 Type II/IV secretion system protein FDY98_RS02095 PF03702 Anhydro-N-acetylmuramic acid kinase FDY98_RS02100 PF00579 tRNA synthetases class I (W and Y) FDY98_RS02185 PF00085 Thioredoxin FDY98_RS02225 PF03776 Septum formation topological specificity factor MinE FDY98_RS02230 PF00929 Exonuclease FDY98_RS02230 PF08411 Exonuclease C-terminal FDY98_RS02235 PF00675 Insulinase (Peptidase family M16) FDY98_RS02235 PF05193 Peptidase M16 inactive domain FDY98_RS02235 PF16187 Middle or third domain of peptidase_M16 FDY98_RS02245 PF13305 Tetracyclin repressor-like, C-terminal domain FDY98_RS02245 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS02260 PF01578 Cytochrome C assembly protein FDY98_RS02265 PF00448 SRP54-type protein, GTPase domain FDY98_RS02265 PF02881 SRP54-type protein, helical bundle domain FDY98_RS02265 PF02978 Signal peptide binding domain FDY98_RS02270 PF00886 Ribosomal protein S16 FDY98_RS02275 PF01782 RimM N-terminal domain FDY98_RS02275 PF05239 PRC-barrel domain FDY98_RS02280 PF01746 tRNA (Guanine-1)-methyltransferase FDY98_RS02285 PF01245 Ribosomal protein L19 FDY98_RS02305 PF14821 Threonine synthase N terminus FDY98_RS02305 PF00291 Pyridoxal-phosphate dependent enzyme FDY98_RS02310 PF17768 RecJ OB domain FDY98_RS02310 PF02272 DHHA1 domain FDY98_RS02310 PF01368 DHH family FDY98_RS02325 PF13411 MerR HTH family regulatory protein FDY98_RS02390 PF06005 Cell division protein ZapB FDY98_RS02410 PF18075 FtsX extracellular domain FDY98_RS02420 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS02430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDY98_RS02430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDY98_RS02430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDY98_RS02430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDY98_RS02445 PF04002 RadC-like JAB domain FDY98_RS02450 PF00830 Ribosomal L28 family FDY98_RS02455 PF00471 Ribosomal protein L33 FDY98_RS02460 PF06827 Zinc finger found in FPG and IleRS FDY98_RS02460 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FDY98_RS02460 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FDY98_RS02475 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FDY98_RS02475 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FDY98_RS02485 PF00313 'Cold-shock' DNA-binding domain FDY98_RS02495 PF01546 Peptidase family M20/M25/M40 FDY98_RS02495 PF07687 Peptidase dimerisation domain FDY98_RS02500 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle FDY98_RS02500 PF14602 Hexapeptide repeat of succinyl-transferase FDY98_RS02515 PF01842 ACT domain FDY98_RS02515 PF08335 GlnD PII-uridylyltransferase FDY98_RS02515 PF01966 HD domain FDY98_RS02515 PF01909 Nucleotidyltransferase domain FDY98_RS02520 PF00557 Metallopeptidase family M24 FDY98_RS02530 PF00318 Ribosomal protein S2 FDY98_RS02535 PF00889 Elongation factor TS FDY98_RS02545 PF01765 Ribosome recycling factor FDY98_RS02550 PF01255 Putative undecaprenyl diphosphate synthase FDY98_RS02560 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FDY98_RS02560 PF13288 DXP reductoisomerase C-terminal domain FDY98_RS02560 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FDY98_RS02565 PF17820 PDZ domain FDY98_RS02565 PF13180 PDZ domain FDY98_RS02565 PF02163 Peptidase family M50 FDY98_RS02580 PF00132 Bacterial transferase hexapeptide (six repeats) FDY98_RS02580 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FDY98_RS02585 PF07977 FabA-like domain FDY98_RS02595 PF02684 Lipid-A-disaccharide synthetase FDY98_RS02600 PF01351 Ribonuclease HII FDY98_RS02605 PF07733 Bacterial DNA polymerase III alpha NTPase domain FDY98_RS02605 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FDY98_RS02605 PF14579 Helix-hairpin-helix motif FDY98_RS02605 PF02811 PHP domain FDY98_RS02605 PF01336 OB-fold nucleic acid binding domain FDY98_RS02610 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FDY98_RS02615 PF11734 TilS substrate C-terminal domain FDY98_RS02615 PF09179 TilS substrate binding domain FDY98_RS02615 PF01171 PP-loop family FDY98_RS02620 PF02541 Ppx/GppA phosphatase family FDY98_RS02625 PF07497 Rho termination factor, RNA-binding domain FDY98_RS02625 PF07498 Rho termination factor, N-terminal domain FDY98_RS02625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDY98_RS02630 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FDY98_RS02635 PF00175 Oxidoreductase NAD-binding domain FDY98_RS02635 PF00970 Oxidoreductase FAD-binding domain FDY98_RS02640 PF00793 DAHP synthetase I family FDY98_RS02660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDY98_RS02675 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS02685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDY98_RS02685 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS02685 PF00403 Heavy-metal-associated domain FDY98_RS02695 PF00535 Glycosyl transferase family 2 FDY98_RS02700 PF00005 ABC transporter FDY98_RS02705 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS02710 PF13416 Bacterial extracellular solute-binding protein FDY98_RS02770 PF01063 Amino-transferase class IV FDY98_RS02775 PF02789 Cytosol aminopeptidase family, N-terminal domain FDY98_RS02775 PF00883 Cytosol aminopeptidase family, catalytic domain FDY98_RS02780 PF03739 Lipopolysaccharide export system permease LptF/LptG FDY98_RS02785 PF03739 Lipopolysaccharide export system permease LptF/LptG FDY98_RS02800 PF00210 Ferritin-like domain FDY98_RS02810 PF02554 Carbon starvation protein CstA FDY98_RS02815 PF00080 Copper/zinc superoxide dismutase (SODC) FDY98_RS02825 PF07687 Peptidase dimerisation domain FDY98_RS02825 PF01546 Peptidase family M20/M25/M40 FDY98_RS02835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDY98_RS02835 PF00005 ABC transporter FDY98_RS02840 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS02840 PF12911 N-terminal TM domain of oligopeptide transport permease C FDY98_RS02850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDY98_RS02865 PF00899 ThiF family FDY98_RS02875 PF00570 HRDC domain FDY98_RS02875 PF00270 DEAD/DEAH box helicase FDY98_RS02875 PF00271 Helicase conserved C-terminal domain FDY98_RS02875 PF09382 RQC domain FDY98_RS02875 PF16124 RecQ zinc-binding FDY98_RS02885 PF07687 Peptidase dimerisation domain FDY98_RS02885 PF01546 Peptidase family M20/M25/M40 FDY98_RS02890 PF03466 LysR substrate binding domain FDY98_RS02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS02930 PF00535 Glycosyl transferase family 2 FDY98_RS02945 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FDY98_RS02950 PF13520 Amino acid permease FDY98_RS02965 PF02146 Sir2 family FDY98_RS02970 PF00202 Aminotransferase class-III FDY98_RS02970 PF04055 Radical SAM superfamily FDY98_RS02970 PF06968 Biotin and Thiamin Synthesis associated domain FDY98_RS02980 PF12697 Alpha/beta hydrolase family FDY98_RS02980 PF08241 Methyltransferase domain FDY98_RS02985 PF00561 alpha/beta hydrolase fold FDY98_RS03000 PF03942 DTW domain FDY98_RS03010 PF02386 Cation transport protein FDY98_RS03020 PF07311 Dodecin FDY98_RS03025 PF01029 NusB family FDY98_RS03025 PF01189 16S rRNA methyltransferase RsmB/F FDY98_RS03035 PF01327 Polypeptide deformylase FDY98_RS03045 PF17782 DprA winged helix domain FDY98_RS03045 PF02481 DNA recombination-mediator protein A FDY98_RS03050 PF01300 Telomere recombination FDY98_RS03080 PF01926 50S ribosome-binding GTPase FDY98_RS03080 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FDY98_RS03085 PF13360 PQQ-like domain FDY98_RS03090 PF09976 Tetratricopeptide repeat-like domain FDY98_RS03095 PF03129 Anticodon binding domain FDY98_RS03095 PF13393 Histidyl-tRNA synthetase FDY98_RS03110 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) FDY98_RS03115 PF04055 Radical SAM superfamily FDY98_RS03120 PF00334 Nucleoside diphosphate kinase FDY98_RS03125 PF01521 Iron-sulphur cluster biosynthesis FDY98_RS03130 PF00266 Aminotransferase class-V FDY98_RS03135 PF02082 Transcriptional regulator FDY98_RS03140 PF00132 Bacterial transferase hexapeptide (six repeats) FDY98_RS03145 PF00588 SpoU rRNA Methylase family FDY98_RS03150 PF00459 Inositol monophosphatase family FDY98_RS03155 PF07549 SecD/SecF GG Motif FDY98_RS03155 PF02355 Protein export membrane protein FDY98_RS03160 PF07549 SecD/SecF GG Motif FDY98_RS03160 PF02355 Protein export membrane protein FDY98_RS03160 PF13721 SecD export protein N-terminal TM region FDY98_RS03165 PF02699 Preprotein translocase subunit FDY98_RS03170 PF01702 Queuine tRNA-ribosyltransferase FDY98_RS03190 PF12833 Helix-turn-helix domain FDY98_RS03190 PF02311 AraC-like ligand binding domain FDY98_RS03195 PF01042 Endoribonuclease L-PSP FDY98_RS03200 PF02423 Ornithine cyclodeaminase/mu-crystallin family FDY98_RS03215 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS03220 PF00850 Histone deacetylase domain FDY98_RS03225 PF00850 Histone deacetylase domain FDY98_RS03230 PF01063 Amino-transferase class IV FDY98_RS03245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDY98_RS03245 PF00005 ABC transporter FDY98_RS03250 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS03250 PF12911 N-terminal TM domain of oligopeptide transport permease C FDY98_RS03255 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS03260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FDY98_RS03265 PF07729 FCD domain FDY98_RS03265 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS03270 PF00850 Histone deacetylase domain FDY98_RS03275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS03275 PF03466 LysR substrate binding domain FDY98_RS03285 PF00557 Metallopeptidase family M24 FDY98_RS03335 PF12706 Beta-lactamase superfamily domain FDY98_RS03340 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB FDY98_RS03345 PF01381 Helix-turn-helix FDY98_RS03365 PF00561 alpha/beta hydrolase fold FDY98_RS03370 PF01494 FAD binding domain FDY98_RS03375 PF02146 Sir2 family FDY98_RS03380 PF12833 Helix-turn-helix domain FDY98_RS03420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS03435 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS03435 PF00672 HAMP domain FDY98_RS03435 PF00563 EAL domain FDY98_RS03435 PF17154 Gammaproteobacterial periplasmic sensor domain FDY98_RS03440 PF02515 CoA-transferase family III FDY98_RS03445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS03445 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS03445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDY98_RS03450 PF07729 FCD domain FDY98_RS03450 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS03485 PF04350 Pilus assembly protein, PilO FDY98_RS03495 PF00263 Bacterial type II and III secretion system protein FDY98_RS03495 PF03958 Bacterial type II/III secretion system short domain FDY98_RS03495 PF07660 Secretin and TonB N terminus short domain FDY98_RS03495 PF11741 AMIN domain FDY98_RS03505 PF01761 3-dehydroquinate synthase FDY98_RS03515 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS03515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FDY98_RS03520 PF00117 Glutamine amidotransferase class-I FDY98_RS03520 PF06418 CTP synthase N-terminus FDY98_RS03525 PF00793 DAHP synthetase I family FDY98_RS03545 PF02464 Competence-damaged protein FDY98_RS03550 PF00154 recA bacterial DNA recombination protein FDY98_RS03565 PF00696 Amino acid kinase family FDY98_RS03565 PF01842 ACT domain FDY98_RS03565 PF13840 ACT domain FDY98_RS03570 PF02599 Global regulator protein family FDY98_RS03590 PF01207 Dihydrouridine synthase (Dus) FDY98_RS03600 PF00364 Biotin-requiring enzyme FDY98_RS03600 PF00682 HMGL-like FDY98_RS03600 PF02436 Conserved carboxylase domain FDY98_RS03605 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit FDY98_RS03610 PF09186 Domain of unknown function (DUF1949) FDY98_RS03610 PF01205 Uncharacterized protein family UPF0029 FDY98_RS03620 PF00005 ABC transporter FDY98_RS03625 PF03379 CcmB protein FDY98_RS03630 PF01578 Cytochrome C assembly protein FDY98_RS03635 PF04995 Heme exporter protein D (CcmD) FDY98_RS03640 PF03100 CcmE FDY98_RS03650 PF08534 Redoxin FDY98_RS03655 PF03918 Cytochrome C biogenesis protein FDY98_RS03670 PF04354 ZipA, C-terminal FtsZ-binding domain FDY98_RS03680 PF06794 Uncharacterised protein family (UPF0270) FDY98_RS03685 PF01266 FAD dependent oxidoreductase FDY98_RS03685 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FDY98_RS03690 PF03795 YCII-related domain FDY98_RS03695 PF02811 PHP domain FDY98_RS03710 PF00027 Cyclic nucleotide-binding domain FDY98_RS03710 PF00520 Ion transport protein FDY98_RS03720 PF01865 Protein of unknown function DUF47 FDY98_RS03725 PF01384 Phosphate transporter family FDY98_RS03760 PF02601 Exonuclease VII, large subunit FDY98_RS03760 PF13742 OB-fold nucleic acid binding domain FDY98_RS03775 PF00005 ABC transporter FDY98_RS03775 PF08402 TOBE domain FDY98_RS03790 PF00455 DeoR C terminal sensor domain FDY98_RS03790 PF08220 DeoR-like helix-turn-helix domain FDY98_RS03815 PF00571 CBS domain FDY98_RS03815 PF00478 IMP dehydrogenase / GMP reductase domain FDY98_RS03835 PF00196 Bacterial regulatory proteins, luxR family FDY98_RS03835 PF03472 Autoinducer binding domain FDY98_RS03860 PF02801 Beta-ketoacyl synthase, C-terminal domain FDY98_RS03860 PF00109 Beta-ketoacyl synthase, N-terminal domain FDY98_RS03885 PF12833 Helix-turn-helix domain FDY98_RS03905 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS03925 PF00892 EamA-like transporter family FDY98_RS03930 PF03466 LysR substrate binding domain FDY98_RS03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS03990 PF01047 MarR family FDY98_RS03990 PF00583 Acetyltransferase (GNAT) family FDY98_RS04025 PF01638 HxlR-like helix-turn-helix FDY98_RS04035 PF01047 MarR family FDY98_RS04035 PF00583 Acetyltransferase (GNAT) family FDY98_RS04045 PF01593 Flavin containing amine oxidoreductase FDY98_RS04055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS04055 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS04055 PF00672 HAMP domain FDY98_RS04060 PF00072 Response regulator receiver domain FDY98_RS04060 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS04065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDY98_RS04065 PF00529 HlyD membrane-fusion protein of T1SS FDY98_RS04075 PF07690 Major Facilitator Superfamily FDY98_RS04080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS04080 PF03466 LysR substrate binding domain FDY98_RS04085 PF01546 Peptidase family M20/M25/M40 FDY98_RS04085 PF07687 Peptidase dimerisation domain FDY98_RS04090 PF03606 C4-dicarboxylate anaerobic carrier FDY98_RS04125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS04125 PF03466 LysR substrate binding domain FDY98_RS04130 PF13419 Haloacid dehalogenase-like hydrolase FDY98_RS04140 PF07690 Major Facilitator Superfamily FDY98_RS04145 PF00593 TonB dependent receptor FDY98_RS04145 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS04155 PF02567 Phenazine biosynthesis-like protein FDY98_RS04175 PF00717 Peptidase S24-like FDY98_RS04175 PF01381 Helix-turn-helix FDY98_RS04195 PF07690 Major Facilitator Superfamily FDY98_RS04220 PF12833 Helix-turn-helix domain FDY98_RS04220 PF12852 Cupin FDY98_RS04240 PF08521 Two-component sensor kinase N-terminal FDY98_RS04240 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS04240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS04245 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS04245 PF00072 Response regulator receiver domain FDY98_RS04270 PF03466 LysR substrate binding domain FDY98_RS04270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS04290 PF00248 Aldo/keto reductase family FDY98_RS04295 PF00248 Aldo/keto reductase family FDY98_RS04305 PF02625 XdhC and CoxI family FDY98_RS04305 PF13478 XdhC Rossmann domain FDY98_RS04310 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FDY98_RS04315 PF01799 [2Fe-2S] binding domain FDY98_RS04315 PF00111 2Fe-2S iron-sulfur cluster binding domain FDY98_RS04320 PF07995 Glucose / Sorbosone dehydrogenase FDY98_RS04325 PF00072 Response regulator receiver domain FDY98_RS04325 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS04335 PF07681 DoxX FDY98_RS04340 PF12833 Helix-turn-helix domain FDY98_RS04340 PF06719 AraC-type transcriptional regulator N-terminus FDY98_RS04350 PF00941 FAD binding domain in molybdopterin dehydrogenase FDY98_RS04350 PF03450 CO dehydrogenase flavoprotein C-terminal domain FDY98_RS04355 PF00111 2Fe-2S iron-sulfur cluster binding domain FDY98_RS04355 PF01799 [2Fe-2S] binding domain FDY98_RS04355 PF10518 TAT (twin-arginine translocation) pathway signal sequence FDY98_RS04380 PF16363 GDP-mannose 4,6 dehydratase FDY98_RS04385 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS04395 PF00106 short chain dehydrogenase FDY98_RS04400 PF06719 AraC-type transcriptional regulator N-terminus FDY98_RS04400 PF12833 Helix-turn-helix domain FDY98_RS04410 PF00106 short chain dehydrogenase FDY98_RS04415 PF03466 LysR substrate binding domain FDY98_RS04415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS04450 PF14602 Hexapeptide repeat of succinyl-transferase FDY98_RS04450 PF12464 Maltose acetyltransferase FDY98_RS04455 PF01042 Endoribonuclease L-PSP FDY98_RS04470 PF00529 HlyD membrane-fusion protein of T1SS FDY98_RS04470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDY98_RS04500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS04500 PF03466 LysR substrate binding domain FDY98_RS04525 PF02525 Flavodoxin-like fold FDY98_RS04530 PF01794 Ferric reductase like transmembrane component FDY98_RS04540 PF01645 Conserved region in glutamate synthase FDY98_RS04565 PF01381 Helix-turn-helix FDY98_RS04570 PF01177 Asp/Glu/Hydantoin racemase FDY98_RS04595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FDY98_RS04595 PF00034 Cytochrome c FDY98_RS04600 PF01593 Flavin containing amine oxidoreductase FDY98_RS04645 PF12833 Helix-turn-helix domain FDY98_RS04645 PF06719 AraC-type transcriptional regulator N-terminus FDY98_RS04650 PF00375 Sodium:dicarboxylate symporter family FDY98_RS04670 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS04675 PF01965 DJ-1/PfpI family FDY98_RS04675 PF12833 Helix-turn-helix domain FDY98_RS04680 PF01679 Proteolipid membrane potential modulator FDY98_RS04690 PF01011 PQQ enzyme repeat FDY98_RS04765 PF00005 ABC transporter FDY98_RS04770 PF00459 Inositol monophosphatase family FDY98_RS04810 PF03621 MbtH-like protein FDY98_RS04815 PF00501 AMP-binding enzyme FDY98_RS04815 PF00668 Condensation domain FDY98_RS04815 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS04815 PF00975 Thioesterase domain FDY98_RS04815 PF00550 Phosphopantetheine attachment site FDY98_RS04830 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FDY98_RS04835 PF07993 Male sterility protein FDY98_RS04835 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS04835 PF00501 AMP-binding enzyme FDY98_RS04835 PF00550 Phosphopantetheine attachment site FDY98_RS04835 PF00668 Condensation domain FDY98_RS04845 PF00550 Phosphopantetheine attachment site FDY98_RS04845 PF00668 Condensation domain FDY98_RS04845 PF00501 AMP-binding enzyme FDY98_RS04845 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS04850 PF00501 AMP-binding enzyme FDY98_RS04850 PF00550 Phosphopantetheine attachment site FDY98_RS04850 PF00668 Condensation domain FDY98_RS04850 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS04875 PF01497 Periplasmic binding protein FDY98_RS04880 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS04880 PF00593 TonB dependent receptor FDY98_RS04885 PF07859 alpha/beta hydrolase fold FDY98_RS04890 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FDY98_RS04900 PF00664 ABC transporter transmembrane region FDY98_RS04900 PF00005 ABC transporter FDY98_RS04915 PF01032 FecCD transport family FDY98_RS04930 PF01381 Helix-turn-helix FDY98_RS04945 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS04945 PF00593 TonB dependent receptor FDY98_RS04950 PF00891 O-methyltransferase domain FDY98_RS04970 PF00593 TonB dependent receptor FDY98_RS04970 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS04975 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS04975 PF00593 TonB dependent receptor FDY98_RS04980 PF01497 Periplasmic binding protein FDY98_RS04995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS05000 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS05000 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FDY98_RS05010 PF02837 Glycosyl hydrolases family 2, sugar binding domain FDY98_RS05010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FDY98_RS05010 PF00703 Glycosyl hydrolases family 2 FDY98_RS05010 PF16355 Domain of unknown function (DUF4982) FDY98_RS05025 PF01810 LysE type translocator FDY98_RS05030 PF01212 Beta-eliminating lyase FDY98_RS05035 PF00355 Rieske [2Fe-2S] domain FDY98_RS05035 PF01266 FAD dependent oxidoreductase FDY98_RS05040 PF13302 Acetyltransferase (GNAT) domain FDY98_RS05045 PF01435 Peptidase family M48 FDY98_RS05055 PF13378 Enolase C-terminal domain-like FDY98_RS05055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDY98_RS05070 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS05075 PF02615 Malate/L-lactate dehydrogenase FDY98_RS05080 PF00701 Dihydrodipicolinate synthetase family FDY98_RS05095 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS05100 PF08666 SAF domain FDY98_RS05100 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus FDY98_RS05105 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDY98_RS05105 PF13378 Enolase C-terminal domain-like FDY98_RS05125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDY98_RS05125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDY98_RS05125 PF00205 Thiamine pyrophosphate enzyme, central domain FDY98_RS05135 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS05135 PF07729 FCD domain FDY98_RS05140 PF00171 Aldehyde dehydrogenase family FDY98_RS05230 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDY98_RS05230 PF13806 Rieske-like [2Fe-2S] domain FDY98_RS05230 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS05230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDY98_RS05230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDY98_RS05230 PF04324 BFD-like [2Fe-2S] binding domain FDY98_RS05235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FDY98_RS05235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FDY98_RS05235 PF04324 BFD-like [2Fe-2S] binding domain FDY98_RS05235 PF18267 Rubredoxin NAD+ reductase C-terminal domain FDY98_RS05235 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS05240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDY98_RS05240 PF04324 BFD-like [2Fe-2S] binding domain FDY98_RS05240 PF00384 Molybdopterin oxidoreductase FDY98_RS05240 PF01568 Molydopterin dinucleotide binding domain FDY98_RS05260 PF00248 Aldo/keto reductase family FDY98_RS05300 PF00005 ABC transporter FDY98_RS05320 PF03401 Tripartite tricarboxylate transporter family receptor FDY98_RS05325 PF02417 Chromate transporter FDY98_RS05330 PF02417 Chromate transporter FDY98_RS05345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS05345 PF02203 Tar ligand binding domain homologue FDY98_RS05345 PF00672 HAMP domain FDY98_RS05360 PF00106 short chain dehydrogenase FDY98_RS05400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS05400 PF03466 LysR substrate binding domain FDY98_RS05405 PF13409 Glutathione S-transferase, N-terminal domain FDY98_RS05430 PF04493 Endonuclease V FDY98_RS05435 PF00958 GMP synthase C terminal domain FDY98_RS05435 PF00117 Glutamine amidotransferase class-I FDY98_RS05440 PF08534 Redoxin FDY98_RS05490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDY98_RS05490 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FDY98_RS05515 PF01048 Phosphorylase superfamily FDY98_RS05520 PF01676 Metalloenzyme superfamily FDY98_RS05525 PF02885 Glycosyl transferase family, helical bundle domain FDY98_RS05525 PF00591 Glycosyl transferase family, a/b domain FDY98_RS05525 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain FDY98_RS05530 PF01791 DeoC/LacD family aldolase FDY98_RS05535 PF01773 Na+ dependent nucleoside transporter N-terminus FDY98_RS05535 PF07670 Nucleoside recognition FDY98_RS05535 PF07662 Na+ dependent nucleoside transporter C-terminus FDY98_RS05540 PF03502 Nucleoside-specific channel-forming protein, Tsx FDY98_RS05545 PF00455 DeoR C terminal sensor domain FDY98_RS05545 PF08220 DeoR-like helix-turn-helix domain FDY98_RS05550 PF06481 COX Aromatic Rich Motif FDY98_RS05550 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FDY98_RS05555 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDY98_RS05560 PF00510 Cytochrome c oxidase subunit III FDY98_RS05565 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FDY98_RS05570 PF01040 UbiA prenyltransferase family FDY98_RS05620 PF03070 TENA/THI-4/PQQC family FDY98_RS05625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS05635 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS05650 PF00005 ABC transporter FDY98_RS05655 PF13977 BetI-type transcriptional repressor, C-terminal FDY98_RS05655 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS05660 PF00155 Aminotransferase class I and II FDY98_RS05665 PF01361 Tautomerase enzyme FDY98_RS05685 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system FDY98_RS05690 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FDY98_RS05700 PF03466 LysR substrate binding domain FDY98_RS05700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS05705 PF00107 Zinc-binding dehydrogenase FDY98_RS05705 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS05710 PF03466 LysR substrate binding domain FDY98_RS05710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS05720 PF00356 Bacterial regulatory proteins, lacI family FDY98_RS05725 PF00701 Dihydrodipicolinate synthetase family FDY98_RS05730 PF01566 Natural resistance-associated macrophage protein FDY98_RS05755 PF12833 Helix-turn-helix domain FDY98_RS05755 PF07883 Cupin domain FDY98_RS05765 PF00583 Acetyltransferase (GNAT) family FDY98_RS05785 PF02311 AraC-like ligand binding domain FDY98_RS05785 PF12833 Helix-turn-helix domain FDY98_RS05790 PF00892 EamA-like transporter family FDY98_RS05805 PF00248 Aldo/keto reductase family FDY98_RS05820 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FDY98_RS05820 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FDY98_RS05825 PF01370 NAD dependent epimerase/dehydratase family FDY98_RS05845 PF00355 Rieske [2Fe-2S] domain FDY98_RS05870 PF13427 Domain of unknown function (DUF4111) FDY98_RS05870 PF01909 Nucleotidyltransferase domain FDY98_RS05880 PF13302 Acetyltransferase (GNAT) domain FDY98_RS05885 PF03466 LysR substrate binding domain FDY98_RS05885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS05890 PF07690 Major Facilitator Superfamily FDY98_RS05895 PF00248 Aldo/keto reductase family FDY98_RS05915 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FDY98_RS05915 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDY98_RS05920 PF03466 LysR substrate binding domain FDY98_RS05920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS05925 PF03466 LysR substrate binding domain FDY98_RS05925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS05940 PF04994 TfoX C-terminal domain FDY98_RS05940 PF04993 TfoX N-terminal domain FDY98_RS05955 PF02525 Flavodoxin-like fold FDY98_RS05960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS05960 PF03466 LysR substrate binding domain FDY98_RS05970 PF09278 MerR, DNA binding FDY98_RS05970 PF00376 MerR family regulatory protein FDY98_RS05990 PF07690 Major Facilitator Superfamily FDY98_RS05995 PF02627 Carboxymuconolactone decarboxylase family FDY98_RS06005 PF04542 Sigma-70 region 2 FDY98_RS06005 PF08281 Sigma-70, region 4 FDY98_RS06005 PF12680 SnoaL-like domain FDY98_RS06010 PF02659 Putative manganese efflux pump FDY98_RS06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS06035 PF03466 LysR substrate binding domain FDY98_RS06040 PF04828 Glutathione-dependent formaldehyde-activating enzyme FDY98_RS06060 PF00534 Glycosyl transferases group 1 FDY98_RS06060 PF13439 Glycosyltransferase Family 4 FDY98_RS06070 PF00925 GTP cyclohydrolase II FDY98_RS06115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDY98_RS06130 PF12806 Acetyl-CoA dehydrogenase C-terminal like FDY98_RS06130 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS06130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDY98_RS06130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS06135 PF00501 AMP-binding enzyme FDY98_RS06135 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS06140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDY98_RS06140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDY98_RS06145 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS06155 PF13417 Glutathione S-transferase, N-terminal domain FDY98_RS06155 PF00043 Glutathione S-transferase, C-terminal domain FDY98_RS06160 PF07152 YaeQ protein FDY98_RS06180 PF02798 Glutathione S-transferase, N-terminal domain FDY98_RS06190 PF02566 OsmC-like protein FDY98_RS06195 PF01047 MarR family FDY98_RS06215 PF01202 Shikimate kinase FDY98_RS06220 PF00356 Bacterial regulatory proteins, lacI family FDY98_RS06220 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FDY98_RS06235 PF02566 OsmC-like protein FDY98_RS06255 PF00293 NUDIX domain FDY98_RS06265 PF01784 NIF3 (NGG1p interacting factor 3) FDY98_RS06270 PF04198 Putative sugar-binding domain FDY98_RS06280 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS06285 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS06315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDY98_RS06315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FDY98_RS06330 PF02560 Cyanate lyase C-terminal domain FDY98_RS06350 PF00529 HlyD membrane-fusion protein of T1SS FDY98_RS06350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FDY98_RS06355 PF00873 AcrB/AcrD/AcrF family FDY98_RS06370 PF08361 MAATS-type transcriptional repressor, C-terminal region FDY98_RS06370 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS06385 PF01207 Dihydrouridine synthase (Dus) FDY98_RS06390 PF00589 Phage integrase family FDY98_RS06400 PF10548 P22AR C-terminal domain FDY98_RS06400 PF08346 AntA/AntB antirepressor FDY98_RS06640 PF00959 Phage lysozyme FDY98_RS06710 PF00749 tRNA synthetases class I (E and Q), catalytic domain FDY98_RS06725 PF00285 Citrate synthase, C-terminal domain FDY98_RS06730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDY98_RS06735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FDY98_RS06740 PF00890 FAD binding domain FDY98_RS06740 PF02910 Fumarate reductase flavoprotein C-term FDY98_RS06745 PF13085 2Fe-2S iron-sulfur cluster binding domain FDY98_RS06755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDY98_RS06755 PF00364 Biotin-requiring enzyme FDY98_RS06755 PF02817 e3 binding domain FDY98_RS06760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDY98_RS06760 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS06765 PF00549 CoA-ligase FDY98_RS06765 PF08442 ATP-grasp domain FDY98_RS06800 PF00483 Nucleotidyl transferase FDY98_RS06810 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FDY98_RS06815 PF08206 Ribonuclease B OB domain FDY98_RS06815 PF00773 RNB domain FDY98_RS06815 PF00575 S1 RNA binding domain FDY98_RS06815 PF17876 Cold shock domain FDY98_RS06835 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS06835 PF00072 Response regulator receiver domain FDY98_RS06840 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS06840 PF00672 HAMP domain FDY98_RS06840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS06845 PF01547 Bacterial extracellular solute-binding protein FDY98_RS06850 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS06855 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS06860 PF00005 ABC transporter FDY98_RS06860 PF17912 MalK OB fold domain FDY98_RS06860 PF03459 TOBE domain FDY98_RS06870 PF05128 Domain of unknown function (DUF697) FDY98_RS06885 PF01263 Aldose 1-epimerase FDY98_RS06900 PF00877 NlpC/P60 family FDY98_RS06910 PF00005 ABC transporter FDY98_RS06915 PF12704 MacB-like periplasmic core domain FDY98_RS06915 PF02687 FtsX-like permease family FDY98_RS06915 PF00005 ABC transporter FDY98_RS06920 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS06920 PF12911 N-terminal TM domain of oligopeptide transport permease C FDY98_RS06925 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS06935 PF01402 Ribbon-helix-helix protein, copG family FDY98_RS06935 PF08753 NikR C terminal nickel binding domain FDY98_RS06940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDY98_RS06950 PF05433 Glycine zipper 2TM domain FDY98_RS06955 PF00463 Isocitrate lyase family FDY98_RS06960 PF13673 Acetyltransferase (GNAT) domain FDY98_RS06965 PF08007 Cupin superfamily protein FDY98_RS06990 PF00849 RNA pseudouridylate synthase FDY98_RS06995 PF03971 Monomeric isocitrate dehydrogenase FDY98_RS07005 PF07724 AAA domain (Cdc48 subfamily) FDY98_RS07005 PF10431 C-terminal, D2-small domain, of ClpB protein FDY98_RS07005 PF02861 Clp amino terminal domain, pathogenicity island component FDY98_RS07005 PF17871 AAA lid domain FDY98_RS07005 PF00004 ATPase family associated with various cellular activities (AAA) FDY98_RS07010 PF01176 Translation initiation factor 1A / IF-1 FDY98_RS07015 PF04377 Arginine-tRNA-protein transferase, C terminus FDY98_RS07015 PF04376 Arginine-tRNA-protein transferase, N terminus FDY98_RS07020 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FDY98_RS07035 PF00004 ATPase family associated with various cellular activities (AAA) FDY98_RS07035 PF12002 MgsA AAA+ ATPase C terminal FDY98_RS07035 PF16193 AAA C-terminal domain FDY98_RS07045 PF01177 Asp/Glu/Hydantoin racemase FDY98_RS07065 PF04957 Ribosome modulation factor FDY98_RS07070 PF10672 S-adenosylmethionine-dependent methyltransferase FDY98_RS07070 PF01170 Putative RNA methylase family UPF0020 FDY98_RS07070 PF02926 THUMP domain FDY98_RS07085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDY98_RS07085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS07085 PF11890 Domain of unknown function (DUF3410) FDY98_RS07090 PF01435 Peptidase family M48 FDY98_RS07100 PF01926 50S ribosome-binding GTPase FDY98_RS07105 PF01641 SelR domain FDY98_RS07115 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS07125 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS07160 PF00171 Aldehyde dehydrogenase family FDY98_RS07170 PF01061 ABC-2 type transporter FDY98_RS07175 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FDY98_RS07175 PF14489 QueF-like protein FDY98_RS07225 PF04002 RadC-like JAB domain FDY98_RS07250 PF00717 Peptidase S24-like FDY98_RS07255 PF13438 Domain of unknown function (DUF4113) FDY98_RS07255 PF00817 impB/mucB/samB family FDY98_RS07255 PF11799 impB/mucB/samB family C-terminal domain FDY98_RS07270 PF05930 Prophage CP4-57 regulatory protein (AlpA) FDY98_RS07285 PF08019 Phosphoethanolamine transferase EptA/EptB FDY98_RS07285 PF00884 Sulfatase FDY98_RS07295 PF01219 Prokaryotic diacylglycerol kinase FDY98_RS07310 PF08521 Two-component sensor kinase N-terminal FDY98_RS07310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS07310 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS07360 PF01381 Helix-turn-helix FDY98_RS07380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS07380 PF03466 LysR substrate binding domain FDY98_RS07385 PF18158 Adaptive response protein AidB N-terminal domain FDY98_RS07385 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS07385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS07425 PF03466 LysR substrate binding domain FDY98_RS07425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS07450 PF06779 Uncharacterised MFS-type transporter YbfB FDY98_RS07460 PF11799 impB/mucB/samB family C-terminal domain FDY98_RS07460 PF00817 impB/mucB/samB family FDY98_RS07460 PF13438 Domain of unknown function (DUF4113) FDY98_RS07465 PF00717 Peptidase S24-like FDY98_RS07475 PF00664 ABC transporter transmembrane region FDY98_RS07475 PF00005 ABC transporter FDY98_RS07495 PF00535 Glycosyl transferase family 2 FDY98_RS07515 PF14524 Wzt C-terminal domain FDY98_RS07515 PF00005 ABC transporter FDY98_RS07545 PF00535 Glycosyl transferase family 2 FDY98_RS07630 PF08269 Cache domain FDY98_RS07630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS07655 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS07655 PF00072 Response regulator receiver domain FDY98_RS07695 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FDY98_RS07695 PF01872 RibD C-terminal domain FDY98_RS07700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FDY98_RS07700 PF00925 GTP cyclohydrolase II FDY98_RS07705 PF00885 6,7-dimethyl-8-ribityllumazine synthase FDY98_RS07715 PF00586 AIR synthase related protein, N-terminal domain FDY98_RS07715 PF02769 AIR synthase related protein, C-terminal domain FDY98_RS07720 PF04608 Phosphatidylglycerophosphatase A FDY98_RS07735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS07735 PF08447 PAS fold FDY98_RS07735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS07735 PF08447 PAS fold FDY98_RS07740 PF08447 PAS fold FDY98_RS07740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS07740 PF08447 PAS fold FDY98_RS07740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS07755 PF00293 NUDIX domain FDY98_RS07760 PF13419 Haloacid dehalogenase-like hydrolase FDY98_RS07765 PF01479 S4 domain FDY98_RS07770 PF01430 Hsp33 protein FDY98_RS07775 PF01293 Phosphoenolpyruvate carboxykinase FDY98_RS07780 PF01641 SelR domain FDY98_RS07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS07790 PF03466 LysR substrate binding domain FDY98_RS07820 PF01042 Endoribonuclease L-PSP FDY98_RS07830 PF00005 ABC transporter FDY98_RS07835 PF00005 ABC transporter FDY98_RS07845 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS07855 PF00501 AMP-binding enzyme FDY98_RS07855 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS07875 PF00106 short chain dehydrogenase FDY98_RS07880 PF01494 FAD binding domain FDY98_RS07885 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ FDY98_RS07920 PF00293 NUDIX domain FDY98_RS07925 PF01590 GAF domain FDY98_RS07925 PF00391 PEP-utilising enzyme, mobile domain FDY98_RS07925 PF02896 PEP-utilising enzyme, TIM barrel domain FDY98_RS07925 PF05524 PEP-utilising enzyme, N-terminal FDY98_RS07940 PF01925 Sulfite exporter TauE/SafE FDY98_RS07945 PF01790 Prolipoprotein diacylglyceryl transferase FDY98_RS07955 PF00186 Dihydrofolate reductase FDY98_RS07960 PF17516 ProQ C-terminal domain FDY98_RS07960 PF04352 ProQ/FINO family FDY98_RS07970 PF13609 Gram-negative porin FDY98_RS07980 PF02563 Polysaccharide biosynthesis/export protein FDY98_RS07980 PF10531 SLBB domain FDY98_RS08005 PF00005 ABC transporter FDY98_RS08010 PF16363 GDP-mannose 4,6 dehydratase FDY98_RS08020 PF04321 RmlD substrate binding domain FDY98_RS08030 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FDY98_RS08050 PF01348 Type II intron maturase FDY98_RS08050 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FDY98_RS08080 PF00535 Glycosyl transferase family 2 FDY98_RS08085 PF00535 Glycosyl transferase family 2 FDY98_RS08105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FDY98_RS08105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FDY98_RS08105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FDY98_RS08105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FDY98_RS08110 PF02080 TrkA-C domain FDY98_RS08110 PF03600 Citrate transporter FDY98_RS08125 PF01507 Phosphoadenosine phosphosulfate reductase family FDY98_RS08130 PF00009 Elongation factor Tu GTP binding domain FDY98_RS08135 PF00459 Inositol monophosphatase family FDY98_RS08165 PF00155 Aminotransferase class I and II FDY98_RS08190 PF05159 Capsule polysaccharide biosynthesis protein FDY98_RS08210 PF13673 Acetyltransferase (GNAT) domain FDY98_RS08245 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS08245 PF07702 UTRA domain FDY98_RS08255 PF01979 Amidohydrolase family FDY98_RS08265 PF17391 Urocanase N-terminal domain FDY98_RS08265 PF17392 Urocanase C-terminal domain FDY98_RS08265 PF01175 Urocanase Rossmann-like domain FDY98_RS08270 PF00221 Aromatic amino acid lyase FDY98_RS08275 PF13726 Na+-H+ antiporter family FDY98_RS08275 PF03553 Na+/H+ antiporter family FDY98_RS08325 PF16242 Pyridoxamine 5'-phosphate oxidase like FDY98_RS08345 PF00149 Calcineurin-like phosphoesterase FDY98_RS08370 PF01636 Phosphotransferase enzyme family FDY98_RS08375 PF01933 Uncharacterised protein family UPF0052 FDY98_RS08380 PF01965 DJ-1/PfpI family FDY98_RS08380 PF12833 Helix-turn-helix domain FDY98_RS08385 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDY98_RS08390 PF07859 alpha/beta hydrolase fold FDY98_RS08405 PF05853 beta-keto acid cleavage enzyme FDY98_RS08430 PF07729 FCD domain FDY98_RS08430 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS08435 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS08460 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS08460 PF00107 Zinc-binding dehydrogenase FDY98_RS08470 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS08470 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FDY98_RS08525 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS08530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS08540 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS08550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS08550 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDY98_RS08555 PF00294 pfkB family carbohydrate kinase FDY98_RS08560 PF00356 Bacterial regulatory proteins, lacI family FDY98_RS08575 PF05175 Methyltransferase small domain FDY98_RS08575 PF08468 Methyltransferase small domain N-terminal FDY98_RS08580 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS08580 PF07729 FCD domain FDY98_RS08620 PF06853 Protein of unknown function (DUF1249) FDY98_RS08625 PF00149 Calcineurin-like phosphoesterase FDY98_RS08630 PF01507 Phosphoadenosine phosphosulfate reductase family FDY98_RS08635 PF00009 Elongation factor Tu GTP binding domain FDY98_RS08640 PF12849 PBP superfamily domain FDY98_RS08650 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS08660 PF01965 DJ-1/PfpI family FDY98_RS08670 PF04298 Putative neutral zinc metallopeptidase FDY98_RS08715 PF08003 Protein of unknown function (DUF1698) FDY98_RS08725 PF00342 Phosphoglucose isomerase FDY98_RS08730 PF01751 Toprim domain FDY98_RS08730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS08730 PF00986 DNA gyrase B subunit, carboxyl terminus FDY98_RS08730 PF00204 DNA gyrase B FDY98_RS08735 PF00672 HAMP domain FDY98_RS08735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS08735 PF02203 Tar ligand binding domain homologue FDY98_RS08740 PF03989 DNA gyrase C-terminal domain, beta-propeller FDY98_RS08740 PF00521 DNA gyrase/topoisomerase IV, subunit A FDY98_RS08750 PF03334 Na+/H+ antiporter subunit FDY98_RS08755 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FDY98_RS08760 PF01899 Na+/H+ ion antiporter subunit FDY98_RS08765 PF00361 Proton-conducting membrane transporter FDY98_RS08770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FDY98_RS08775 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FDY98_RS08775 PF00361 Proton-conducting membrane transporter FDY98_RS08775 PF13244 Domain of unknown function (DUF4040) FDY98_RS08775 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDY98_RS08785 PF08502 LeuA allosteric (dimerisation) domain FDY98_RS08785 PF00682 HMGL-like FDY98_RS08795 PF01011 PQQ enzyme repeat FDY98_RS08815 PF04055 Radical SAM superfamily FDY98_RS08820 PF09285 Elongation factor P, C-terminal FDY98_RS08820 PF01132 Elongation factor P (EF-P) OB domain FDY98_RS08820 PF08207 Elongation factor P (EF-P) KOW-like domain FDY98_RS08825 PF00152 tRNA synthetases class II (D, K and N) FDY98_RS08830 PF07690 Major Facilitator Superfamily FDY98_RS08835 PF13533 Biotin-lipoyl like FDY98_RS08840 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS08850 PF00581 Rhodanese-like domain FDY98_RS08855 PF03193 RsgA GTPase FDY98_RS08865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS08870 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDY98_RS08870 PF13378 Enolase C-terminal domain-like FDY98_RS08890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS08890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDY98_RS08895 PF00929 Exonuclease FDY98_RS08900 PF08331 Domain of unknown function (DUF1730) FDY98_RS08910 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FDY98_RS08915 PF11741 AMIN domain FDY98_RS08915 PF01520 N-acetylmuramoyl-L-alanine amidase FDY98_RS08920 PF08676 MutL C terminal dimerisation domain FDY98_RS08920 PF01119 DNA mismatch repair protein, C-terminal domain FDY98_RS08930 PF17209 Hfq protein FDY98_RS08935 PF16360 GTP-binding GTPase Middle Region FDY98_RS08935 PF01926 50S ribosome-binding GTPase FDY98_RS08935 PF13167 GTP-binding GTPase N-terminal FDY98_RS08940 PF01145 SPFH domain / Band 7 family FDY98_RS08940 PF12221 Bacterial membrane protein N terminal FDY98_RS08945 PF01145 SPFH domain / Band 7 family FDY98_RS08950 PF13393 Histidyl-tRNA synthetase FDY98_RS08955 PF00709 Adenylosuccinate synthetase FDY98_RS08960 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FDY98_RS08960 PF12557 Cob(I)alamin adenosyltransferase N terminal FDY98_RS08965 PF04461 Protein of unknown function (DUF520) FDY98_RS08970 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FDY98_RS08970 PF11940 Domain of unknown function (DUF3458) Ig-like fold FDY98_RS08970 PF01433 Peptidase family M1 domain FDY98_RS08975 PF00781 Diacylglycerol kinase catalytic domain FDY98_RS08985 PF00313 'Cold-shock' DNA-binding domain FDY98_RS09015 PF00300 Histidine phosphatase superfamily (branch 1) FDY98_RS09020 PF02934 GatB/GatE catalytic domain FDY98_RS09020 PF02637 GatB domain FDY98_RS09025 PF01425 Amidase FDY98_RS09055 PF10150 Ribonuclease E/G family FDY98_RS09055 PF00575 S1 RNA binding domain FDY98_RS09075 PF01523 Putative modulator of DNA gyrase FDY98_RS09080 PF00381 PTS HPr component phosphorylation site FDY98_RS09085 PF03668 P-loop ATPase protein family FDY98_RS09090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDY98_RS09095 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FDY98_RS09100 PF04552 Sigma-54, DNA binding domain FDY98_RS09100 PF04963 Sigma-54 factor, core binding domain FDY98_RS09100 PF00309 Sigma-54 factor, Activator interacting domain (AID) FDY98_RS09105 PF00005 ABC transporter FDY98_RS09105 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDY98_RS09110 PF04453 LPS transport system D FDY98_RS09110 PF03968 OstA-like protein FDY98_RS09125 PF01380 SIS domain FDY98_RS09125 PF00571 CBS domain FDY98_RS09130 PF00005 ABC transporter FDY98_RS09135 PF02405 Permease MlaE FDY98_RS09140 PF02470 MlaD protein FDY98_RS09145 PF05494 MlaC protein FDY98_RS09165 PF01634 ATP phosphoribosyltransferase FDY98_RS09180 PF01784 NIF3 (NGG1p interacting factor 3) FDY98_RS09185 PF06295 Protein of unknown function (DUF1043) FDY98_RS09190 PF03969 AFG1-like ATPase FDY98_RS09195 PF00572 Ribosomal protein L13 FDY98_RS09200 PF00380 Ribosomal protein S9/S16 FDY98_RS09205 PF00355 Rieske [2Fe-2S] domain FDY98_RS09205 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FDY98_RS09215 PF02167 Cytochrome C1 family FDY98_RS09220 PF00043 Glutathione S-transferase, C-terminal domain FDY98_RS09220 PF02798 Glutathione S-transferase, N-terminal domain FDY98_RS09225 PF04386 Stringent starvation protein B FDY98_RS09230 PF04972 BON domain FDY98_RS09235 PF13580 SIS domain FDY98_RS09240 PF02021 Uncharacterised protein family UPF0102 FDY98_RS09250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDY98_RS09260 PF01795 MraW methylase family FDY98_RS09265 PF04999 Cell division protein FtsL FDY98_RS09270 PF00905 Penicillin binding protein transpeptidase domain FDY98_RS09270 PF03717 Penicillin-binding Protein dimerisation domain FDY98_RS09280 PF01225 Mur ligase family, catalytic domain FDY98_RS09280 PF08245 Mur ligase middle domain FDY98_RS09280 PF02875 Mur ligase family, glutamate ligase domain FDY98_RS09290 PF08245 Mur ligase middle domain FDY98_RS09290 PF02875 Mur ligase family, glutamate ligase domain FDY98_RS09295 PF01098 Cell cycle protein FDY98_RS09300 PF04101 Glycosyltransferase family 28 C-terminal domain FDY98_RS09300 PF03033 Glycosyltransferase family 28 N-terminal domain FDY98_RS09305 PF02875 Mur ligase family, glutamate ligase domain FDY98_RS09305 PF01225 Mur ligase family, catalytic domain FDY98_RS09305 PF08245 Mur ligase middle domain FDY98_RS09310 PF01820 D-ala D-ala ligase N-terminus FDY98_RS09310 PF07478 D-ala D-ala ligase C-terminus FDY98_RS09315 PF03799 Cell division protein FtsQ FDY98_RS09315 PF08478 POTRA domain, FtsQ-type FDY98_RS09320 PF02491 SHS2 domain inserted in FTSA FDY98_RS09350 PF01960 ArgJ family FDY98_RS09360 PF00795 Carbon-nitrogen hydrolase FDY98_RS09365 PF04371 Porphyromonas-type peptidyl-arginine deiminase FDY98_RS09370 PF02687 FtsX-like permease family FDY98_RS09370 PF12704 MacB-like periplasmic core domain FDY98_RS09375 PF00005 ABC transporter FDY98_RS09400 PF03966 Trm112p-like protein FDY98_RS09415 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FDY98_RS09415 PF01565 FAD binding domain FDY98_RS09430 PF13419 Haloacid dehalogenase-like hydrolase FDY98_RS09440 PF02545 Maf-like protein FDY98_RS09450 PF01783 Ribosomal L32p protein family FDY98_RS09455 PF02504 Fatty acid synthesis protein FDY98_RS09460 PF00698 Acyl transferase domain FDY98_RS09470 PF00550 Phosphopantetheine attachment site FDY98_RS09475 PF02801 Beta-ketoacyl synthase, C-terminal domain FDY98_RS09475 PF00109 Beta-ketoacyl synthase, N-terminal domain FDY98_RS09480 PF01063 Amino-transferase class IV FDY98_RS09485 PF02618 YceG-like family FDY98_RS09490 PF02223 Thymidylate kinase FDY98_RS09495 PF09115 DNA polymerase III, delta subunit, C terminal FDY98_RS09505 PF01026 TatD related DNase FDY98_RS09515 PF00580 UvrD/REP helicase N-terminal domain FDY98_RS09515 PF13361 UvrD-like helicase C-terminal domain FDY98_RS09530 PF01590 GAF domain FDY98_RS09530 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS09530 PF00360 Phytochrome region FDY98_RS09530 PF00563 EAL domain FDY98_RS09545 PF00766 Electron transfer flavoprotein FAD-binding domain FDY98_RS09545 PF01012 Electron transfer flavoprotein domain FDY98_RS09560 PF07972 NrdI Flavodoxin like FDY98_RS09570 PF00268 Ribonucleotide reductase, small chain FDY98_RS09585 PF00293 NUDIX domain FDY98_RS09595 PF01618 MotA/TolQ/ExbB proton channel family FDY98_RS09600 PF01618 MotA/TolQ/ExbB proton channel family FDY98_RS09605 PF02472 Biopolymer transport protein ExbD/TolR FDY98_RS09620 PF03372 Endonuclease/Exonuclease/phosphatase family FDY98_RS09630 PF00270 DEAD/DEAH box helicase FDY98_RS09630 PF00271 Helicase conserved C-terminal domain FDY98_RS09635 PF13307 Helicase C-terminal domain FDY98_RS09635 PF06733 DEAD_2 FDY98_RS09640 PF00793 DAHP synthetase I family FDY98_RS09645 PF04542 Sigma-70 region 2 FDY98_RS09645 PF08281 Sigma-70, region 4 FDY98_RS09665 PF13180 PDZ domain FDY98_RS09670 PF03144 Elongation factor Tu domain 2 FDY98_RS09670 PF00679 Elongation factor G C-terminus FDY98_RS09670 PF00009 Elongation factor Tu GTP binding domain FDY98_RS09670 PF06421 GTP-binding protein LepA C-terminus FDY98_RS09675 PF10502 Signal peptidase, peptidase S26 FDY98_RS09680 PF14622 Ribonuclease-III-like FDY98_RS09680 PF00035 Double-stranded RNA binding motif FDY98_RS09685 PF01926 50S ribosome-binding GTPase FDY98_RS09685 PF07650 KH domain FDY98_RS09690 PF11967 Recombination protein O N terminal FDY98_RS09690 PF02565 Recombination protein O C terminal FDY98_RS09695 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FDY98_RS09700 PF01648 4'-phosphopantetheinyl transferase superfamily FDY98_RS09705 PF00672 HAMP domain FDY98_RS09705 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS09705 PF01627 Hpt domain FDY98_RS09705 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FDY98_RS09705 PF00072 Response regulator receiver domain FDY98_RS09705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS09710 PF00291 Pyridoxal-phosphate dependent enzyme FDY98_RS09720 PF04607 Region found in RelA / SpoT proteins FDY98_RS09720 PF02824 TGS domain FDY98_RS09720 PF13291 ACT domain FDY98_RS09725 PF03819 MazG nucleotide pyrophosphohydrolase domain FDY98_RS09740 PF00849 RNA pseudouridylate synthase FDY98_RS09740 PF01479 S4 domain FDY98_RS09750 PF00117 Glutamine amidotransferase class-I FDY98_RS09755 PF00425 chorismate binding enzyme FDY98_RS09755 PF04715 Anthranilate synthase component I, N terminal region FDY98_RS09760 PF01371 Trp repressor protein FDY98_RS09775 PF05593 RHS Repeat FDY98_RS09775 PF03527 RHS protein FDY98_RS09795 PF05593 RHS Repeat FDY98_RS09795 PF03527 RHS protein FDY98_RS09800 PF05593 RHS Repeat FDY98_RS09800 PF03527 RHS protein FDY98_RS09800 PF15606 Bacterial toxin 34 FDY98_RS09825 PF00682 HMGL-like FDY98_RS09835 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS09840 PF01039 Carboxyl transferase domain FDY98_RS09845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS09845 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS09845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDY98_RS09855 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDY98_RS09855 PF00005 ABC transporter FDY98_RS09860 PF00005 ABC transporter FDY98_RS09870 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS09880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDY98_RS09880 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS09880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS09885 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDY98_RS09885 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDY98_RS09885 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS09930 PF02899 Phage integrase, N-terminal SAM-like domain FDY98_RS09930 PF00589 Phage integrase family FDY98_RS09935 PF07690 Major Facilitator Superfamily FDY98_RS09970 PF01168 Alanine racemase, N-terminal domain FDY98_RS09970 PF14031 Putative serine dehydratase domain FDY98_RS09990 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS09995 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS10000 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS10005 PF03466 LysR substrate binding domain FDY98_RS10015 PF00455 DeoR C terminal sensor domain FDY98_RS10015 PF08220 DeoR-like helix-turn-helix domain FDY98_RS10020 PF00293 NUDIX domain FDY98_RS10090 PF01435 Peptidase family M48 FDY98_RS10095 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS10095 PF17151 Periplasmic sensor domain FDY98_RS10120 PF00082 Subtilase family FDY98_RS10135 PF08448 PAS fold FDY98_RS10135 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS10145 PF00266 Aminotransferase class-V FDY98_RS10150 PF03301 Tryptophan 2,3-dioxygenase FDY98_RS10155 PF04011 LemA family FDY98_RS10165 PF13673 Acetyltransferase (GNAT) domain FDY98_RS10165 PF04229 GrpB protein FDY98_RS10185 PF02525 Flavodoxin-like fold FDY98_RS10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS10190 PF03466 LysR substrate binding domain FDY98_RS10195 PF02308 MgtC family FDY98_RS10230 PF01751 Toprim domain FDY98_RS10230 PF01131 DNA topoisomerase FDY98_RS10235 PF03109 ABC1 family FDY98_RS10240 PF07516 SecA Wing and Scaffold domain FDY98_RS10240 PF07517 SecA DEAD-like domain FDY98_RS10240 PF01043 SecA preprotein cross-linking domain FDY98_RS10240 PF02810 SEC-C motif FDY98_RS10245 PF07690 Major Facilitator Superfamily FDY98_RS10250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDY98_RS10265 PF00360 Phytochrome region FDY98_RS10265 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS10265 PF01590 GAF domain FDY98_RS10265 PF00563 EAL domain FDY98_RS10280 PF00563 EAL domain FDY98_RS10280 PF03707 Bacterial signalling protein N terminal repeat FDY98_RS10280 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS10295 PF04073 Aminoacyl-tRNA editing domain FDY98_RS10295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDY98_RS10295 PF03129 Anticodon binding domain FDY98_RS10320 PF00107 Zinc-binding dehydrogenase FDY98_RS10320 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS10325 PF02080 TrkA-C domain FDY98_RS10325 PF03600 Citrate transporter FDY98_RS10330 PF08220 DeoR-like helix-turn-helix domain FDY98_RS10330 PF00455 DeoR C terminal sensor domain FDY98_RS10345 PF01266 FAD dependent oxidoreductase FDY98_RS10345 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FDY98_RS10360 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS10370 PF00005 ABC transporter FDY98_RS10370 PF17912 MalK OB fold domain FDY98_RS10375 PF17912 MalK OB fold domain FDY98_RS10375 PF00005 ABC transporter FDY98_RS10390 PF00171 Aldehyde dehydrogenase family FDY98_RS10395 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS10395 PF13977 BetI-type transcriptional repressor, C-terminal FDY98_RS10400 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDY98_RS10415 PF13533 Biotin-lipoyl like FDY98_RS10420 PF00005 ABC transporter FDY98_RS10435 PF01556 DnaJ C terminal domain FDY98_RS10435 PF00226 DnaJ domain FDY98_RS10455 PF00107 Zinc-binding dehydrogenase FDY98_RS10455 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS10470 PF13607 Succinyl-CoA ligase like flavodoxin domain FDY98_RS10470 PF13380 CoA binding domain FDY98_RS10470 PF00583 Acetyltransferase (GNAT) family FDY98_RS10485 PF00561 alpha/beta hydrolase fold FDY98_RS10485 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus FDY98_RS10490 PF00011 Hsp20/alpha crystallin family FDY98_RS10500 PF02397 Bacterial sugar transferase FDY98_RS10505 PF04932 O-Antigen ligase FDY98_RS10510 PF02698 DUF218 domain FDY98_RS10525 PF02563 Polysaccharide biosynthesis/export protein FDY98_RS10525 PF10531 SLBB domain FDY98_RS10525 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FDY98_RS10570 PF00156 Phosphoribosyl transferase domain FDY98_RS10575 PF00535 Glycosyl transferase family 2 FDY98_RS10585 PF00535 Glycosyl transferase family 2 FDY98_RS10595 PF01757 Acyltransferase family FDY98_RS10605 PF00535 Glycosyl transferase family 2 FDY98_RS10610 PF00132 Bacterial transferase hexapeptide (six repeats) FDY98_RS10610 PF00101 Ribulose bisphosphate carboxylase, small chain FDY98_RS10615 PF02742 Iron dependent repressor, metal binding and dimerisation domain FDY98_RS10615 PF01325 Iron dependent repressor, N-terminal DNA binding domain FDY98_RS10630 PF07556 Protein of unknown function (DUF1538) FDY98_RS10635 PF07556 Protein of unknown function (DUF1538) FDY98_RS10655 PF00118 TCP-1/cpn60 chaperonin family FDY98_RS10660 PF00166 Chaperonin 10 Kd subunit FDY98_RS10710 PF00171 Aldehyde dehydrogenase family FDY98_RS10715 PF01808 AICARFT/IMPCHase bienzyme FDY98_RS10715 PF02142 MGS-like domain FDY98_RS10720 PF02954 Bacterial regulatory protein, Fis family FDY98_RS10725 PF01207 Dihydrouridine synthase (Dus) FDY98_RS10740 PF00364 Biotin-requiring enzyme FDY98_RS10750 PF00719 Inorganic pyrophosphatase FDY98_RS10765 PF00929 Exonuclease FDY98_RS10785 PF00563 EAL domain FDY98_RS10785 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS10785 PF13426 PAS domain FDY98_RS10800 PF00929 Exonuclease FDY98_RS10805 PF00072 Response regulator receiver domain FDY98_RS10805 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS10815 PF00730 HhH-GPD superfamily base excision DNA repair protein FDY98_RS10815 PF10576 Iron-sulfur binding domain of endonuclease III FDY98_RS10815 PF00633 Helix-hairpin-helix motif FDY98_RS10820 PF02508 Rnf-Nqr subunit, membrane protein FDY98_RS10825 PF04205 FMN-binding domain FDY98_RS10830 PF03116 NQR2, RnfD, RnfE family FDY98_RS10835 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FDY98_RS10835 PF12838 4Fe-4S dicluster domain FDY98_RS10835 PF13375 RnfC Barrel sandwich hybrid domain FDY98_RS10835 PF10531 SLBB domain FDY98_RS10845 PF02508 Rnf-Nqr subunit, membrane protein FDY98_RS10850 PF09334 tRNA synthetases class I (M) FDY98_RS10850 PF01588 Putative tRNA binding domain FDY98_RS10865 PF04381 Putative exonuclease, RdgC FDY98_RS10875 PF00521 DNA gyrase/topoisomerase IV, subunit A FDY98_RS10875 PF03989 DNA gyrase C-terminal domain, beta-propeller FDY98_RS10880 PF00266 Aminotransferase class-V FDY98_RS10900 PF00575 S1 RNA binding domain FDY98_RS10925 PF03884 DNA gyrase inhibitor YacG FDY98_RS10935 PF01478 Type IV leader peptidase family FDY98_RS10935 PF06750 Bacterial Peptidase A24 N-terminal domain FDY98_RS10940 PF00482 Type II secretion system (T2SS), protein F FDY98_RS10945 PF00437 Type II/IV secretion system protein FDY98_RS10945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FDY98_RS10950 PF07963 Prokaryotic N-terminal methylation motif FDY98_RS10950 PF00114 Pilin (bacterial filament) FDY98_RS10960 PF00459 Inositol monophosphatase family FDY98_RS10975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS10975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDY98_RS10980 PF00701 Dihydrodipicolinate synthetase family FDY98_RS10985 PF13378 Enolase C-terminal domain-like FDY98_RS10985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDY98_RS10990 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS11005 PF00920 Dehydratase family FDY98_RS11020 PF00501 AMP-binding enzyme FDY98_RS11020 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS11025 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FDY98_RS11025 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FDY98_RS11040 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS11080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDY98_RS11080 PF00205 Thiamine pyrophosphate enzyme, central domain FDY98_RS11080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDY98_RS11090 PF00107 Zinc-binding dehydrogenase FDY98_RS11090 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS11100 PF00171 Aldehyde dehydrogenase family FDY98_RS11105 PF02678 Pirin FDY98_RS11105 PF05726 Pirin C-terminal cupin domain FDY98_RS11120 PF03466 LysR substrate binding domain FDY98_RS11120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS11130 PF03466 LysR substrate binding domain FDY98_RS11135 PF00857 Isochorismatase family FDY98_RS11145 PF00561 alpha/beta hydrolase fold FDY98_RS11160 PF07730 Histidine kinase FDY98_RS11160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS11160 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FDY98_RS11160 PF00672 HAMP domain FDY98_RS11165 PF00196 Bacterial regulatory proteins, luxR family FDY98_RS11165 PF00072 Response regulator receiver domain FDY98_RS11170 PF12833 Helix-turn-helix domain FDY98_RS11195 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS11195 PF00107 Zinc-binding dehydrogenase FDY98_RS11200 PF03358 NADPH-dependent FMN reductase FDY98_RS11215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDY98_RS11215 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS11220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDY98_RS11220 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS11230 PF00196 Bacterial regulatory proteins, luxR family FDY98_RS11250 PF00158 Sigma-54 interaction domain FDY98_RS11250 PF06505 Activator of aromatic catabolism FDY98_RS11250 PF02830 V4R domain FDY98_RS11250 PF02954 Bacterial regulatory protein, Fis family FDY98_RS11290 PF07729 FCD domain FDY98_RS11290 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS11305 PF00561 alpha/beta hydrolase fold FDY98_RS11310 PF02566 OsmC-like protein FDY98_RS11315 PF12852 Cupin FDY98_RS11315 PF12833 Helix-turn-helix domain FDY98_RS11320 PF01638 HxlR-like helix-turn-helix FDY98_RS11350 PF07690 Major Facilitator Superfamily FDY98_RS11360 PF07690 Major Facilitator Superfamily FDY98_RS11365 PF00072 Response regulator receiver domain FDY98_RS11365 PF00196 Bacterial regulatory proteins, luxR family FDY98_RS11390 PF05573 NosL FDY98_RS11395 PF12679 ABC-2 family transporter protein FDY98_RS11400 PF00005 ABC transporter FDY98_RS11425 PF04343 Protein of unknown function, DUF488 FDY98_RS11435 PF00034 Cytochrome c FDY98_RS11440 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDY98_RS11445 PF08406 CbbQ/NirQ/NorQ C-terminal FDY98_RS11445 PF07728 AAA domain (dynein-related subfamily) FDY98_RS11465 PF00510 Cytochrome c oxidase subunit III FDY98_RS11470 PF02036 SCP-2 sterol transfer family FDY98_RS11475 PF00970 Oxidoreductase FAD-binding domain FDY98_RS11475 PF00042 Globin FDY98_RS11475 PF00175 Oxidoreductase NAD-binding domain FDY98_RS11490 PF02082 Transcriptional regulator FDY98_RS11495 PF04055 Radical SAM superfamily FDY98_RS11515 PF01136 Peptidase family U32 FDY98_RS11530 PF14711 Respiratory nitrate reductase beta C-terminal FDY98_RS11530 PF13247 4Fe-4S dicluster domain FDY98_RS11535 PF02613 Nitrate reductase delta subunit FDY98_RS11540 PF02665 Nitrate reductase gamma subunit FDY98_RS11545 PF00639 PPIC-type PPIASE domain FDY98_RS11545 PF09312 SurA N-terminal domain FDY98_RS11555 PF03453 MoeA N-terminal region (domain I and II) FDY98_RS11555 PF00994 Probable molybdopterin binding domain FDY98_RS11555 PF03454 MoeA C-terminal region (domain IV) FDY98_RS11560 PF08859 DGC domain FDY98_RS11565 PF06463 Molybdenum Cofactor Synthesis C FDY98_RS11565 PF04055 Radical SAM superfamily FDY98_RS11585 PF03641 Possible lysine decarboxylase FDY98_RS11585 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases FDY98_RS11585 PF11892 Domain of unknown function (DUF3412) FDY98_RS11590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS11590 PF03466 LysR substrate binding domain FDY98_RS11595 PF02347 Glycine cleavage system P-protein FDY98_RS11600 PF01597 Glycine cleavage H-protein FDY98_RS11630 PF01144 Coenzyme A transferase FDY98_RS11645 PF00462 Glutaredoxin FDY98_RS11660 PF00072 Response regulator receiver domain FDY98_RS11665 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS11665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS11670 PF01979 Amidohydrolase family FDY98_RS11675 PF01048 Phosphorylase superfamily FDY98_RS11680 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FDY98_RS11680 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FDY98_RS11725 PF00009 Elongation factor Tu GTP binding domain FDY98_RS11725 PF16658 Class II release factor RF3, C-terminal domain FDY98_RS11730 PF01026 TatD related DNase FDY98_RS11735 PF01571 Aminomethyltransferase folate-binding domain FDY98_RS11755 PF06827 Zinc finger found in FPG and IleRS FDY98_RS11755 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FDY98_RS11755 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FDY98_RS11765 PF13396 Phospholipase_D-nuclease N-terminal FDY98_RS11765 PF13091 PLD-like domain FDY98_RS11770 PF03466 LysR substrate binding domain FDY98_RS11770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS11790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS11790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDY98_RS11810 PF01330 RuvA N terminal domain FDY98_RS11810 PF07499 RuvA, C-terminal domain FDY98_RS11815 PF05491 RuvB C-terminal winged helix domain FDY98_RS11815 PF17864 RuvB AAA lid domain FDY98_RS11815 PF05496 Holliday junction DNA helicase RuvB P-loop domain FDY98_RS11820 PF03061 Thioesterase superfamily FDY98_RS11825 PF01618 MotA/TolQ/ExbB proton channel family FDY98_RS11840 PF07676 WD40-like Beta Propeller Repeat FDY98_RS11840 PF04052 TolB amino-terminal domain FDY98_RS11845 PF00691 OmpA family FDY98_RS11855 PF00106 short chain dehydrogenase FDY98_RS11860 PF13419 Haloacid dehalogenase-like hydrolase FDY98_RS11870 PF00483 Nucleotidyl transferase FDY98_RS11895 PF01625 Peptide methionine sulfoxide reductase FDY98_RS11905 PF00484 Carbonic anhydrase FDY98_RS11915 PF00583 Acetyltransferase (GNAT) family FDY98_RS11920 PF00202 Aminotransferase class-III FDY98_RS11925 PF06339 Ectoine synthase FDY98_RS11930 PF18030 RimK PreATP-grasp domain FDY98_RS11930 PF08443 RimK-like ATP-grasp domain FDY98_RS11945 PF01475 Ferric uptake regulator family FDY98_RS11950 PF01502 Phosphoribosyl-AMP cyclohydrolase FDY98_RS11955 PF01809 Putative membrane protein insertion efficiency factor FDY98_RS11960 PF02657 Fe-S metabolism associated domain FDY98_RS11975 PF01106 NifU-like domain FDY98_RS11975 PF01521 Iron-sulphur cluster biosynthesis FDY98_RS11985 PF01554 MatE FDY98_RS12010 PF03358 NADPH-dependent FMN reductase FDY98_RS12045 PF04358 DsrC like protein FDY98_RS12055 PF02635 DsrE/DsrF-like family FDY98_RS12060 PF02635 DsrE/DsrF-like family FDY98_RS12065 PF01027 Inhibitor of apoptosis-promoting Bax1 FDY98_RS12130 PF02954 Bacterial regulatory protein, Fis family FDY98_RS12130 PF00072 Response regulator receiver domain FDY98_RS12130 PF00158 Sigma-54 interaction domain FDY98_RS12180 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS12245 PF00149 Calcineurin-like phosphoesterase FDY98_RS12280 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS12295 PF00356 Bacterial regulatory proteins, lacI family FDY98_RS12305 PF00578 AhpC/TSA family FDY98_RS12305 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDY98_RS12310 PF00753 Metallo-beta-lactamase superfamily FDY98_RS12310 PF04273 Putative phosphatase (DUF442) FDY98_RS12320 PF00916 Sulfate permease family FDY98_RS12320 PF01740 STAS domain FDY98_RS12325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDY98_RS12325 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS12355 PF13247 4Fe-4S dicluster domain FDY98_RS12440 PF00005 ABC transporter FDY98_RS12450 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS12450 PF00501 AMP-binding enzyme FDY98_RS12460 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS12465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDY98_RS12465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS12465 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS12470 PF12802 MarR family FDY98_RS12475 PF00881 Nitroreductase family FDY98_RS12480 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS12495 PF00107 Zinc-binding dehydrogenase FDY98_RS12495 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS12505 PF00171 Aldehyde dehydrogenase family FDY98_RS12510 PF00294 pfkB family carbohydrate kinase FDY98_RS12520 PF00465 Iron-containing alcohol dehydrogenase FDY98_RS12525 PF09339 IclR helix-turn-helix domain FDY98_RS12525 PF01614 Bacterial transcriptional regulator FDY98_RS12530 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS12540 PF03401 Tripartite tricarboxylate transporter family receptor FDY98_RS12545 PF02515 CoA-transferase family III FDY98_RS12615 PF00899 ThiF family FDY98_RS12700 PF12697 Alpha/beta hydrolase family FDY98_RS12705 PF02592 Putative vitamin uptake transporter FDY98_RS12710 PF16177 Acetyl-coenzyme A synthetase N-terminus FDY98_RS12710 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS12710 PF00501 AMP-binding enzyme FDY98_RS12715 PF01022 Bacterial regulatory protein, arsR family FDY98_RS12720 PF01343 Peptidase family S49 FDY98_RS12720 PF08496 Peptidase family S49 N-terminal FDY98_RS12730 PF09297 NADH pyrophosphatase zinc ribbon domain FDY98_RS12730 PF00293 NUDIX domain FDY98_RS12730 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain FDY98_RS12735 PF00929 Exonuclease FDY98_RS12740 PF00075 RNase H FDY98_RS12750 PF16123 Hydroxyacylglutathione hydrolase C-terminus FDY98_RS12750 PF00753 Metallo-beta-lactamase superfamily FDY98_RS12755 PF01476 LysM domain FDY98_RS12755 PF01464 Transglycosylase SLT domain FDY98_RS12780 PF01479 S4 domain FDY98_RS12780 PF00849 RNA pseudouridylate synthase FDY98_RS12785 PF00795 Carbon-nitrogen hydrolase FDY98_RS12790 PF00892 EamA-like transporter family FDY98_RS12815 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS12820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS12820 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS12820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDY98_RS12830 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS12860 PF00501 AMP-binding enzyme FDY98_RS12860 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS12865 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS12865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDY98_RS12865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS12885 PF02405 Permease MlaE FDY98_RS12890 PF00005 ABC transporter FDY98_RS12905 PF00069 Protein kinase domain FDY98_RS12910 PF02817 e3 binding domain FDY98_RS12910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDY98_RS12910 PF00364 Biotin-requiring enzyme FDY98_RS12915 PF02817 e3 binding domain FDY98_RS12915 PF00364 Biotin-requiring enzyme FDY98_RS12915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FDY98_RS12920 PF02779 Transketolase, pyrimidine binding domain FDY98_RS12920 PF02780 Transketolase, C-terminal domain FDY98_RS12925 PF00676 Dehydrogenase E1 component FDY98_RS12925 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal FDY98_RS12930 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS12935 PF00005 ABC transporter FDY98_RS12940 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS12945 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FDY98_RS12950 PF01406 tRNA synthetases class I (C) catalytic domain FDY98_RS12950 PF09190 DALR domain FDY98_RS12960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FDY98_RS12965 PF00149 Calcineurin-like phosphoesterase FDY98_RS12970 PF13145 PPIC-type PPIASE domain FDY98_RS12975 PF00216 Bacterial DNA-binding protein FDY98_RS12985 PF07724 AAA domain (Cdc48 subfamily) FDY98_RS12985 PF10431 C-terminal, D2-small domain, of ClpB protein FDY98_RS12985 PF06689 ClpX C4-type zinc finger FDY98_RS12990 PF00574 Clp protease FDY98_RS12995 PF05698 Bacterial trigger factor protein (TF) C-terminus FDY98_RS12995 PF05697 Bacterial trigger factor protein (TF) FDY98_RS12995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDY98_RS13005 PF00258 Flavodoxin FDY98_RS13015 PF00216 Bacterial DNA-binding protein FDY98_RS13020 PF03147 Ferredoxin-fold anticodon binding domain FDY98_RS13020 PF01588 Putative tRNA binding domain FDY98_RS13020 PF03483 B3/4 domain FDY98_RS13020 PF03484 tRNA synthetase B5 domain FDY98_RS13020 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FDY98_RS13025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FDY98_RS13025 PF01409 tRNA synthetases class II core domain (F) FDY98_RS13030 PF00453 Ribosomal protein L20 FDY98_RS13035 PF01632 Ribosomal protein L35 FDY98_RS13040 PF00707 Translation initiation factor IF-3, C-terminal domain FDY98_RS13040 PF05198 Translation initiation factor IF-3, N-terminal domain FDY98_RS13045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDY98_RS13045 PF03129 Anticodon binding domain FDY98_RS13045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FDY98_RS13045 PF02824 TGS domain FDY98_RS13050 PF00691 OmpA family FDY98_RS13050 PF05736 OprF membrane domain FDY98_RS13060 PF01040 UbiA prenyltransferase family FDY98_RS13090 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 FDY98_RS13095 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDY98_RS13100 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FDY98_RS13100 PF02790 Cytochrome C oxidase subunit II, transmembrane domain FDY98_RS13120 PF08362 YcdC-like protein, C-terminal region FDY98_RS13120 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS13175 PF00005 ABC transporter FDY98_RS13175 PF00664 ABC transporter transmembrane region FDY98_RS13210 PF03886 ABC-type transport auxiliary lipoprotein component FDY98_RS13220 PF00271 Helicase conserved C-terminal domain FDY98_RS13220 PF00270 DEAD/DEAH box helicase FDY98_RS13230 PF07690 Major Facilitator Superfamily FDY98_RS13235 PF00710 Asparaginase, N-terminal FDY98_RS13235 PF17763 Glutaminase/Asparaginase C-terminal domain FDY98_RS13265 PF03692 Putative zinc- or iron-chelating domain FDY98_RS13275 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FDY98_RS13280 PF11791 Aconitate B N-terminal domain FDY98_RS13280 PF00330 Aconitase family (aconitate hydratase) FDY98_RS13280 PF06434 Aconitate hydratase 2 N-terminus FDY98_RS13285 PF03737 Aldolase/RraA FDY98_RS13290 PF03009 Glycerophosphoryl diester phosphodiesterase family FDY98_RS13310 PF00156 Phosphoribosyl transferase domain FDY98_RS13315 PF00933 Glycosyl hydrolase family 3 N terminal domain FDY98_RS13320 PF03734 L,D-transpeptidase catalytic domain FDY98_RS13320 PF17969 L,D-transpeptidase C-terminal domain FDY98_RS13325 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS13330 PF00717 Peptidase S24-like FDY98_RS13330 PF01726 LexA DNA binding domain FDY98_RS13350 PF02391 MoaE protein FDY98_RS13355 PF01967 MoaC family FDY98_RS13360 PF03205 Molybdopterin guanine dinucleotide synthesis protein B FDY98_RS13365 PF00860 Permease family FDY98_RS13375 PF03167 Uracil DNA glycosylase superfamily FDY98_RS13380 PF00156 Phosphoribosyl transferase domain FDY98_RS13385 PF00156 Phosphoribosyl transferase domain FDY98_RS13395 PF00677 Lumazine binding domain FDY98_RS13400 PF09383 NIL domain FDY98_RS13400 PF00005 ABC transporter FDY98_RS13405 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS13410 PF03180 NLPA lipoprotein FDY98_RS13415 PF13185 GAF domain FDY98_RS13445 PF00308 Bacterial dnaA protein FDY98_RS13450 PF01594 AI-2E family transporter FDY98_RS13460 PF00551 Formyl transferase FDY98_RS13465 PF00692 dUTPase FDY98_RS13470 PF10609 NUBPL iron-transfer P-loop NTPase FDY98_RS13480 PF14824 Sirohaem biosynthesis protein central FDY98_RS13480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDY98_RS13480 PF10414 Sirohaem synthase dimerisation region FDY98_RS13485 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS13490 PF01329 Pterin 4 alpha carbinolamine dehydratase FDY98_RS13495 PF00155 Aminotransferase class I and II FDY98_RS13505 PF01554 MatE FDY98_RS13510 PF04264 YceI-like domain FDY98_RS13515 PF01292 Prokaryotic cytochrome b561 FDY98_RS13525 PF01053 Cys/Met metabolism PLP-dependent enzyme FDY98_RS13530 PF00156 Phosphoribosyl transferase domain FDY98_RS13555 PF00290 Tryptophan synthase alpha chain FDY98_RS13560 PF00291 Pyridoxal-phosphate dependent enzyme FDY98_RS13565 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FDY98_RS13570 PF01416 tRNA pseudouridine synthase FDY98_RS13580 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDY98_RS13580 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDY98_RS13585 PF00180 Isocitrate/isopropylmalate dehydrogenase FDY98_RS13590 PF00694 Aconitase C-terminal domain FDY98_RS13595 PF00330 Aconitase family (aconitate hydratase) FDY98_RS13600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS13605 PF01661 Macro domain FDY98_RS13650 PF01810 LysE type translocator FDY98_RS13680 PF03352 Methyladenine glycosylase FDY98_RS13690 PF08360 QacR-like protein, C-terminal region FDY98_RS13690 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS13700 PF13673 Acetyltransferase (GNAT) domain FDY98_RS13710 PF13673 Acetyltransferase (GNAT) domain FDY98_RS13715 PF05971 RNA methyltransferase FDY98_RS13785 PF01494 FAD binding domain FDY98_RS13790 PF03466 LysR substrate binding domain FDY98_RS13790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS13810 PF02899 Phage integrase, N-terminal SAM-like domain FDY98_RS13810 PF00589 Phage integrase family FDY98_RS13815 PF00589 Phage integrase family FDY98_RS13815 PF13495 Phage integrase, N-terminal SAM-like domain FDY98_RS13830 PF08264 Anticodon-binding domain of tRNA FDY98_RS13830 PF13603 Leucyl-tRNA synthetase, Domain 2 FDY98_RS13830 PF00133 tRNA synthetases class I (I, L, M and V) FDY98_RS13900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDY98_RS13900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDY98_RS13910 PF17969 L,D-transpeptidase C-terminal domain FDY98_RS13910 PF01476 LysM domain FDY98_RS13910 PF03734 L,D-transpeptidase catalytic domain FDY98_RS13940 PF11339 Protein of unknown function (DUF3141) FDY98_RS13945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS13945 PF03466 LysR substrate binding domain FDY98_RS13950 PF04055 Radical SAM superfamily FDY98_RS13960 PF04359 Protein of unknown function (DUF493) FDY98_RS13965 PF07943 Penicillin-binding protein 5, C-terminal domain FDY98_RS13965 PF00768 D-alanyl-D-alanine carboxypeptidase FDY98_RS13970 PF03330 Lytic transglycolase FDY98_RS13970 PF05036 Sporulation related domain FDY98_RS13975 PF13406 Transglycosylase SLT domain FDY98_RS13980 PF01098 Cell cycle protein FDY98_RS13985 PF00905 Penicillin binding protein transpeptidase domain FDY98_RS13985 PF03717 Penicillin-binding Protein dimerisation domain FDY98_RS13990 PF02590 Predicted SPOUT methyltransferase FDY98_RS14000 PF01467 Cytidylyltransferase-like FDY98_RS14005 PF00171 Aldehyde dehydrogenase family FDY98_RS14020 PF09335 SNARE associated Golgi protein FDY98_RS14025 PF01810 LysE type translocator FDY98_RS14030 PF02441 Flavoprotein FDY98_RS14035 PF02875 Mur ligase family, glutamate ligase domain FDY98_RS14035 PF08245 Mur ligase middle domain FDY98_RS14035 PF01225 Mur ligase family, catalytic domain FDY98_RS14075 PF03466 LysR substrate binding domain FDY98_RS14075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS14090 PF00107 Zinc-binding dehydrogenase FDY98_RS14090 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS14105 PF00004 ATPase family associated with various cellular activities (AAA) FDY98_RS14105 PF17871 AAA lid domain FDY98_RS14105 PF02861 Clp amino terminal domain, pathogenicity island component FDY98_RS14105 PF10431 C-terminal, D2-small domain, of ClpB protein FDY98_RS14105 PF07724 AAA domain (Cdc48 subfamily) FDY98_RS14125 PF01042 Endoribonuclease L-PSP FDY98_RS14135 PF00356 Bacterial regulatory proteins, lacI family FDY98_RS14150 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS14160 PF00149 Calcineurin-like phosphoesterase FDY98_RS14165 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FDY98_RS14165 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FDY98_RS14175 PF01810 LysE type translocator FDY98_RS14185 PF06724 Domain of Unknown Function (DUF1206) FDY98_RS14190 PF03992 Antibiotic biosynthesis monooxygenase FDY98_RS14225 PF01047 MarR family FDY98_RS14225 PF00583 Acetyltransferase (GNAT) family FDY98_RS14235 PF01965 DJ-1/PfpI family FDY98_RS14235 PF12833 Helix-turn-helix domain FDY98_RS14295 PF01810 LysE type translocator FDY98_RS14350 PF00376 MerR family regulatory protein FDY98_RS14350 PF09278 MerR, DNA binding FDY98_RS14405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDY98_RS14410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDY98_RS14420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FDY98_RS14455 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDY98_RS14455 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDY98_RS14460 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FDY98_RS14460 PF07685 CobB/CobQ-like glutamine amidotransferase domain FDY98_RS14465 PF12557 Cob(I)alamin adenosyltransferase N terminal FDY98_RS14465 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FDY98_RS14470 PF13519 von Willebrand factor type A domain FDY98_RS14470 PF17863 AAA lid domain FDY98_RS14470 PF07728 AAA domain (dynein-related subfamily) FDY98_RS14480 PF01032 FecCD transport family FDY98_RS14485 PF00005 ABC transporter FDY98_RS14490 PF04893 Yip1 domain FDY98_RS14500 PF12852 Cupin FDY98_RS14500 PF12833 Helix-turn-helix domain FDY98_RS14505 PF00490 Delta-aminolevulinic acid dehydratase FDY98_RS14515 PF00005 ABC transporter FDY98_RS14520 PF01032 FecCD transport family FDY98_RS14530 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS14530 PF00593 TonB dependent receptor FDY98_RS14545 PF00300 Histidine phosphatase superfamily (branch 1) FDY98_RS14550 PF02654 Cobalamin-5-phosphate synthase FDY98_RS14555 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FDY98_RS14560 PF00155 Aminotransferase class I and II FDY98_RS14565 PF03186 CobD/Cbib protein FDY98_RS14570 PF02277 Phosphoribosyltransferase FDY98_RS14580 PF02685 Glucokinase FDY98_RS14590 PF00294 pfkB family carbohydrate kinase FDY98_RS14600 PF13378 Enolase C-terminal domain-like FDY98_RS14600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDY98_RS14605 PF05035 2-keto-3-deoxy-galactonokinase FDY98_RS14620 PF00474 Sodium:solute symporter family FDY98_RS14645 PF02254 TrkA-N domain FDY98_RS14645 PF02080 TrkA-C domain FDY98_RS14655 PF01547 Bacterial extracellular solute-binding protein FDY98_RS14665 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS14680 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS14680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS14680 PF13493 Domain of unknown function (DUF4118) FDY98_RS14680 PF02702 Osmosensitive K+ channel His kinase sensor domain FDY98_RS14685 PF02669 K+-transporting ATPase, c chain FDY98_RS14710 PF04542 Sigma-70 region 2 FDY98_RS14710 PF04545 Sigma-70, region 4 FDY98_RS14735 PF02264 LamB porin FDY98_RS14735 PF11471 Maltoporin periplasmic N-terminal extension FDY98_RS14745 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS14750 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS14755 PF00128 Alpha amylase, catalytic domain FDY98_RS14760 PF00005 ABC transporter FDY98_RS14760 PF17912 MalK OB fold domain FDY98_RS14770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDY98_RS14770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDY98_RS14780 PF02142 MGS-like domain FDY98_RS14790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FDY98_RS14790 PF00381 PTS HPr component phosphorylation site FDY98_RS14790 PF02896 PEP-utilising enzyme, TIM barrel domain FDY98_RS14790 PF00391 PEP-utilising enzyme, mobile domain FDY98_RS14790 PF05524 PEP-utilising enzyme, N-terminal FDY98_RS14795 PF00294 pfkB family carbohydrate kinase FDY98_RS14805 PF00342 Phosphoglucose isomerase FDY98_RS14880 PF01694 Rhomboid family FDY98_RS14880 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease FDY98_RS14900 PF01679 Proteolipid membrane potential modulator FDY98_RS14905 PF00571 CBS domain FDY98_RS14905 PF01743 Poly A polymerase head domain FDY98_RS14920 PF00171 Aldehyde dehydrogenase family FDY98_RS14920 PF01619 Proline dehydrogenase FDY98_RS14920 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FDY98_RS14920 PF14850 DNA-binding domain of Proline dehydrogenase FDY98_RS14945 PF13462 Thioredoxin FDY98_RS14945 PF06965 Na+/H+ antiporter 1 FDY98_RS14950 PF01551 Peptidase family M23 FDY98_RS14955 PF02535 ZIP Zinc transporter FDY98_RS14960 PF13411 MerR HTH family regulatory protein FDY98_RS14965 PF00403 Heavy-metal-associated domain FDY98_RS14970 PF01252 Signal peptidase (SPase) II FDY98_RS14975 PF00795 Carbon-nitrogen hydrolase FDY98_RS15000 PF02082 Transcriptional regulator FDY98_RS15020 PF03358 NADPH-dependent FMN reductase FDY98_RS15035 PF03358 NADPH-dependent FMN reductase FDY98_RS15040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS15040 PF03466 LysR substrate binding domain FDY98_RS15080 PF01219 Prokaryotic diacylglycerol kinase FDY98_RS15095 PF04241 Protein of unknown function (DUF423) FDY98_RS15100 PF02597 ThiS family FDY98_RS15100 PF05690 Thiazole biosynthesis protein ThiG FDY98_RS15110 PF02390 Putative methyltransferase FDY98_RS15135 PF02630 SCO1/SenC FDY98_RS15145 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FDY98_RS15145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDY98_RS15150 PF00582 Universal stress protein family FDY98_RS15165 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS15180 PF02580 D-Tyr-tRNA(Tyr) deacylase FDY98_RS15215 PF01323 DSBA-like thioredoxin domain FDY98_RS15220 PF00034 Cytochrome c FDY98_RS15225 PF01926 50S ribosome-binding GTPase FDY98_RS15230 PF13419 Haloacid dehalogenase-like hydrolase FDY98_RS15235 PF00589 Phage integrase family FDY98_RS15235 PF02899 Phage integrase, N-terminal SAM-like domain FDY98_RS15250 PF01678 Diaminopimelate epimerase FDY98_RS15260 PF00206 Lyase FDY98_RS15260 PF14698 Argininosuccinate lyase C-terminal FDY98_RS15290 PF01741 Large-conductance mechanosensitive channel, MscL FDY98_RS15295 PF00582 Universal stress protein family FDY98_RS15300 PF03466 LysR substrate binding domain FDY98_RS15300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS15310 PF03594 Benzoate membrane transport protein FDY98_RS15315 PF00005 ABC transporter FDY98_RS15320 PF00005 ABC transporter FDY98_RS15320 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDY98_RS15330 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS15335 PF13458 Periplasmic binding protein FDY98_RS15340 PF00866 Ring hydroxylating beta subunit FDY98_RS15345 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDY98_RS15345 PF00355 Rieske [2Fe-2S] domain FDY98_RS15365 PF00111 2Fe-2S iron-sulfur cluster binding domain FDY98_RS15365 PF00175 Oxidoreductase NAD-binding domain FDY98_RS15365 PF00970 Oxidoreductase FAD-binding domain FDY98_RS15370 PF00866 Ring hydroxylating beta subunit FDY98_RS15380 PF04444 Catechol dioxygenase N terminus FDY98_RS15380 PF00775 Dioxygenase FDY98_RS15385 PF02426 Muconolactone delta-isomerase FDY98_RS15390 PF13378 Enolase C-terminal domain-like FDY98_RS15390 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FDY98_RS15400 PF01494 FAD binding domain FDY98_RS15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS15405 PF03466 LysR substrate binding domain FDY98_RS15415 PF05853 beta-keto acid cleavage enzyme FDY98_RS15420 PF00939 Sodium:sulfate symporter transmembrane region FDY98_RS15425 PF01609 Transposase DDE domain FDY98_RS15425 PF05598 Transposase domain (DUF772) FDY98_RS15430 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS15440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS15445 PF00857 Isochorismatase family FDY98_RS15450 PF14525 AraC-binding-like domain FDY98_RS15450 PF12833 Helix-turn-helix domain FDY98_RS15465 PF00171 Aldehyde dehydrogenase family FDY98_RS15480 PF01557 Fumarylacetoacetate (FAA) hydrolase family FDY98_RS15490 PF01494 FAD binding domain FDY98_RS15495 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS15500 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FDY98_RS15500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS15505 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS15525 PF07883 Cupin domain FDY98_RS15535 PF01494 FAD binding domain FDY98_RS15550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS15555 PF01047 MarR family FDY98_RS15560 PF01494 FAD binding domain FDY98_RS15570 PF00171 Aldehyde dehydrogenase family FDY98_RS15575 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS15585 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS15590 PF00775 Dioxygenase FDY98_RS15595 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FDY98_RS15595 PF00775 Dioxygenase FDY98_RS15600 PF03466 LysR substrate binding domain FDY98_RS15600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS15605 PF12697 Alpha/beta hydrolase family FDY98_RS15610 PF00108 Thiolase, N-terminal domain FDY98_RS15610 PF02803 Thiolase, C-terminal domain FDY98_RS15615 PF01144 Coenzyme A transferase FDY98_RS15620 PF01144 Coenzyme A transferase FDY98_RS15635 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS15645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS15650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDY98_RS15650 PF01261 Xylose isomerase-like TIM barrel FDY98_RS15655 PF08501 Shikimate dehydrogenase substrate binding domain FDY98_RS15655 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FDY98_RS15655 PF03435 Saccharopine dehydrogenase NADP binding domain FDY98_RS15660 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS15660 PF07729 FCD domain FDY98_RS15670 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS15680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS15725 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS15735 PF03401 Tripartite tricarboxylate transporter family receptor FDY98_RS15740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDY98_RS15740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FDY98_RS15745 PF01220 Dehydroquinase class II FDY98_RS15750 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FDY98_RS15750 PF08501 Shikimate dehydrogenase substrate binding domain FDY98_RS15770 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS15780 PF09339 IclR helix-turn-helix domain FDY98_RS15780 PF01614 Bacterial transcriptional regulator FDY98_RS15790 PF00209 Sodium:neurotransmitter symporter family FDY98_RS15800 PF01380 SIS domain FDY98_RS15800 PF01418 Helix-turn-helix domain, rpiR family FDY98_RS15805 PF13361 UvrD-like helicase C-terminal domain FDY98_RS15805 PF00580 UvrD/REP helicase N-terminal domain FDY98_RS15810 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS15815 PF03061 Thioesterase superfamily FDY98_RS15820 PF12849 PBP superfamily domain FDY98_RS15825 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS15835 PF00005 ABC transporter FDY98_RS15840 PF01895 PhoU domain FDY98_RS15870 PF00989 PAS fold FDY98_RS15870 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS15870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS15870 PF11808 Phosphate regulon sensor protein PhoR FDY98_RS15875 PF00072 Response regulator receiver domain FDY98_RS15875 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS15880 PF01040 UbiA prenyltransferase family FDY98_RS15885 PF04345 Chorismate lyase FDY98_RS15895 PF00216 Bacterial DNA-binding protein FDY98_RS15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS15905 PF03466 LysR substrate binding domain FDY98_RS15910 PF00171 Aldehyde dehydrogenase family FDY98_RS15915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDY98_RS15915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDY98_RS15920 PF01546 Peptidase family M20/M25/M40 FDY98_RS15920 PF07687 Peptidase dimerisation domain FDY98_RS15935 PF12805 FUSC-like inner membrane protein yccS FDY98_RS15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS15945 PF03466 LysR substrate binding domain FDY98_RS15955 PF01042 Endoribonuclease L-PSP FDY98_RS15965 PF01192 RNA polymerase Rpb6 FDY98_RS15970 PF00625 Guanylate kinase FDY98_RS16005 PF02678 Pirin FDY98_RS16005 PF05726 Pirin C-terminal cupin domain FDY98_RS16010 PF00107 Zinc-binding dehydrogenase FDY98_RS16010 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS16020 PF04851 Type III restriction enzyme, res subunit FDY98_RS16020 PF00271 Helicase conserved C-terminal domain FDY98_RS16020 PF08463 EcoEI R protein C-terminal FDY98_RS16020 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FDY98_RS16025 PF02384 N-6 DNA Methylase FDY98_RS16030 PF05598 Transposase domain (DUF772) FDY98_RS16030 PF01609 Transposase DDE domain FDY98_RS16035 PF01420 Type I restriction modification DNA specificity domain FDY98_RS16060 PF08340 Domain of unknown function (DUF1732) FDY98_RS16060 PF03755 YicC-like family, N-terminal region FDY98_RS16065 PF00356 Bacterial regulatory proteins, lacI family FDY98_RS16080 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS16090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FDY98_RS16090 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FDY98_RS16095 PF03725 3' exoribonuclease family, domain 2 FDY98_RS16095 PF01138 3' exoribonuclease family, domain 1 FDY98_RS16110 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS16110 PF04324 BFD-like [2Fe-2S] binding domain FDY98_RS16125 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS16130 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS16150 PF03466 LysR substrate binding domain FDY98_RS16155 PF03466 LysR substrate binding domain FDY98_RS16155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS16160 PF01266 FAD dependent oxidoreductase FDY98_RS16165 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS16175 PF00156 Phosphoribosyl transferase domain FDY98_RS16180 PF00588 SpoU rRNA Methylase family FDY98_RS16185 PF00580 UvrD/REP helicase N-terminal domain FDY98_RS16185 PF13361 UvrD-like helicase C-terminal domain FDY98_RS16190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FDY98_RS16195 PF13673 Acetyltransferase (GNAT) domain FDY98_RS16195 PF00583 Acetyltransferase (GNAT) family FDY98_RS16200 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS16200 PF00072 Response regulator receiver domain FDY98_RS16215 PF03600 Citrate transporter FDY98_RS16220 PF01380 SIS domain FDY98_RS16225 PF12804 MobA-like NTP transferase domain FDY98_RS16225 PF00132 Bacterial transferase hexapeptide (six repeats) FDY98_RS16225 PF14602 Hexapeptide repeat of succinyl-transferase FDY98_RS16230 PF02424 ApbE family FDY98_RS16235 PF02673 Bacitracin resistance protein BacA FDY98_RS16240 PF01545 Cation efflux family FDY98_RS16240 PF16916 Dimerisation domain of Zinc Transporter FDY98_RS16250 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FDY98_RS16250 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FDY98_RS16255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDY98_RS16255 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDY98_RS16260 PF00231 ATP synthase FDY98_RS16265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDY98_RS16265 PF00306 ATP synthase alpha/beta chain, C terminal domain FDY98_RS16265 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDY98_RS16270 PF00213 ATP synthase delta (OSCP) subunit FDY98_RS16275 PF00430 ATP synthase B/B' CF(0) FDY98_RS16280 PF00137 ATP synthase subunit C FDY98_RS16285 PF00119 ATP synthase A chain FDY98_RS16295 PF17762 HTH domain found in ParB protein FDY98_RS16295 PF02195 ParB-like nuclease domain FDY98_RS16300 PF13614 AAA domain FDY98_RS16305 PF02527 rRNA small subunit methyltransferase G FDY98_RS16310 PF13932 GidA associated domain FDY98_RS16310 PF01134 Glucose inhibited division protein A FDY98_RS16315 PF00005 ABC transporter FDY98_RS16320 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS16325 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS16330 PF01521 Iron-sulphur cluster biosynthesis FDY98_RS16335 PF01118 Semialdehyde dehydrogenase, NAD binding domain FDY98_RS16335 PF02774 Semialdehyde dehydrogenase, dimerisation domain FDY98_RS16345 PF03653 Uncharacterised protein family (UPF0093) FDY98_RS16350 PF08543 Phosphomethylpyrimidine kinase FDY98_RS16355 PF00202 Aminotransferase class-III FDY98_RS16375 PF03783 Curli production assembly/transport component CsgG FDY98_RS16390 PF00196 Bacterial regulatory proteins, luxR family FDY98_RS16395 PF01725 Ham1 family FDY98_RS16410 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FDY98_RS16430 PF00468 Ribosomal protein L34 FDY98_RS16435 PF13614 AAA domain FDY98_RS16445 PF12857 TOBE-like domain FDY98_RS16445 PF00005 ABC transporter FDY98_RS16445 PF17850 CysA C-terminal regulatory domain FDY98_RS16450 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS16460 PF00224 Pyruvate kinase, barrel domain FDY98_RS16460 PF02887 Pyruvate kinase, alpha/beta domain FDY98_RS16470 PF07883 Cupin domain FDY98_RS16470 PF05899 Protein of unknown function (DUF861) FDY98_RS16520 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDY98_RS16540 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH FDY98_RS16560 PF00576 HIUase/Transthyretin family FDY98_RS16565 PF01014 Uricase FDY98_RS16565 PF09349 OHCU decarboxylase FDY98_RS16580 PF02798 Glutathione S-transferase, N-terminal domain FDY98_RS16580 PF00043 Glutathione S-transferase, C-terminal domain FDY98_RS16585 PF13417 Glutathione S-transferase, N-terminal domain FDY98_RS16595 PF00132 Bacterial transferase hexapeptide (six repeats) FDY98_RS16600 PF01565 FAD binding domain FDY98_RS16600 PF02913 FAD linked oxidases, C-terminal domain FDY98_RS16600 PF13183 4Fe-4S dicluster domain FDY98_RS16605 PF00266 Aminotransferase class-V FDY98_RS16610 PF02515 CoA-transferase family III FDY98_RS16615 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS16635 PF03928 Haem-degrading FDY98_RS16640 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS16640 PF07729 FCD domain FDY98_RS16645 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS16645 PF07729 FCD domain FDY98_RS16650 PF01565 FAD binding domain FDY98_RS16650 PF02913 FAD linked oxidases, C-terminal domain FDY98_RS16655 PF01565 FAD binding domain FDY98_RS16660 PF13183 4Fe-4S dicluster domain FDY98_RS16660 PF02754 Cysteine-rich domain FDY98_RS16665 PF03928 Haem-degrading FDY98_RS16700 PF00115 Cytochrome C and Quinol oxidase polypeptide I FDY98_RS16720 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase FDY98_RS16720 PF12801 4Fe-4S binding domain FDY98_RS16720 PF13746 4Fe-4S dicluster domain FDY98_RS16745 PF06969 HemN C-terminal domain FDY98_RS16745 PF04055 Radical SAM superfamily FDY98_RS16750 PF13545 Crp-like helix-turn-helix domain FDY98_RS16750 PF00027 Cyclic nucleotide-binding domain FDY98_RS16755 PF01171 PP-loop family FDY98_RS16775 PF00474 Sodium:solute symporter family FDY98_RS16790 PF00196 Bacterial regulatory proteins, luxR family FDY98_RS16790 PF00072 Response regulator receiver domain FDY98_RS16825 PF05191 Adenylate kinase, active site lid FDY98_RS16840 PF01510 N-acetylmuramoyl-L-alanine amidase FDY98_RS16845 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FDY98_RS16845 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FDY98_RS16860 PF01259 SAICAR synthetase FDY98_RS16875 PF00578 AhpC/TSA family FDY98_RS16880 PF01594 AI-2E family transporter FDY98_RS16885 PF01206 Sulfurtransferase TusA FDY98_RS16895 PF02445 Quinolinate synthetase A protein FDY98_RS16910 PF00849 RNA pseudouridylate synthase FDY98_RS16910 PF01479 S4 domain FDY98_RS16920 PF02616 Segregation and condensation protein ScpA FDY98_RS16940 PF01464 Transglycosylase SLT domain FDY98_RS16940 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS16945 PF14437 MafB19-like deaminase FDY98_RS16955 PF03949 Malic enzyme, NAD binding domain FDY98_RS16955 PF00390 Malic enzyme, N-terminal domain FDY98_RS16960 PF01197 Ribosomal protein L31 FDY98_RS16970 PF00750 tRNA synthetases class I (R) FDY98_RS16970 PF05746 DALR anticodon binding domain FDY98_RS16970 PF03485 Arginyl tRNA synthetase N terminal domain FDY98_RS16980 PF00227 Proteasome subunit FDY98_RS16985 PF00004 ATPase family associated with various cellular activities (AAA) FDY98_RS16985 PF10431 C-terminal, D2-small domain, of ClpB protein FDY98_RS16985 PF07724 AAA domain (Cdc48 subfamily) FDY98_RS17015 PF02416 mttA/Hcf106 family FDY98_RS17020 PF02416 mttA/Hcf106 family FDY98_RS17025 PF00902 Sec-independent protein translocase protein (TatC) FDY98_RS17035 PF00490 Delta-aminolevulinic acid dehydratase FDY98_RS17040 PF13089 Polyphosphate kinase N-terminal domain FDY98_RS17040 PF13090 Polyphosphate kinase C-terminal domain 2 FDY98_RS17040 PF02503 Polyphosphate kinase middle domain FDY98_RS17040 PF17941 Polyphosphate kinase C-terminal domain 1 FDY98_RS17045 PF01717 Cobalamin-independent synthase, Catalytic domain FDY98_RS17045 PF08267 Cobalamin-independent synthase, N-terminal domain FDY98_RS17060 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS17060 PF00072 Response regulator receiver domain FDY98_RS17090 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS17090 PF08448 PAS fold FDY98_RS17120 PF01219 Prokaryotic diacylglycerol kinase FDY98_RS17130 PF00893 Small Multidrug Resistance protein FDY98_RS17135 PF02390 Putative methyltransferase FDY98_RS17140 PF00109 Beta-ketoacyl synthase, N-terminal domain FDY98_RS17140 PF02801 Beta-ketoacyl synthase, C-terminal domain FDY98_RS17145 PF01467 Cytidylyltransferase-like FDY98_RS17150 PF00037 4Fe-4S binding domain FDY98_RS17155 PF01554 MatE FDY98_RS17160 PF02667 Short chain fatty acid transporter FDY98_RS17165 PF03061 Thioesterase superfamily FDY98_RS17175 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS17175 PF00155 Aminotransferase class I and II FDY98_RS17225 PF00210 Ferritin-like domain FDY98_RS17240 PF05127 Helicase FDY98_RS17240 PF13718 GNAT acetyltransferase 2 FDY98_RS17240 PF17176 tRNA-binding domain FDY98_RS17240 PF08351 Domain of unknown function (DUF1726) FDY98_RS17290 PF02322 Cytochrome bd terminal oxidase subunit II FDY98_RS17295 PF01654 Cytochrome bd terminal oxidase subunit I FDY98_RS17305 PF01636 Phosphotransferase enzyme family FDY98_RS17320 PF01557 Fumarylacetoacetate (FAA) hydrolase family FDY98_RS17355 PF04362 Bacterial Fe(2+) trafficking FDY98_RS17360 PF00730 HhH-GPD superfamily base excision DNA repair protein FDY98_RS17360 PF14815 NUDIX domain FDY98_RS17360 PF00633 Helix-hairpin-helix motif FDY98_RS17375 PF00475 Imidazoleglycerol-phosphate dehydratase FDY98_RS17390 PF00977 Histidine biosynthesis protein FDY98_RS17400 PF04222 Protein of unknown function (DUF416) FDY98_RS17410 PF00581 Rhodanese-like domain FDY98_RS17415 PF02769 AIR synthase related protein, C-terminal domain FDY98_RS17415 PF00586 AIR synthase related protein, N-terminal domain FDY98_RS17420 PF18073 Rubredoxin metal binding domain FDY98_RS17430 PF00155 Aminotransferase class I and II FDY98_RS17450 PF01066 CDP-alcohol phosphatidyltransferase FDY98_RS17455 PF10369 Small subunit of acetolactate synthase FDY98_RS17460 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDY98_RS17460 PF00205 Thiamine pyrophosphate enzyme, central domain FDY98_RS17460 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDY98_RS17475 PF02578 Multi-copper polyphenol oxidoreductase laccase FDY98_RS17480 PF00849 RNA pseudouridylate synthase FDY98_RS17480 PF01479 S4 domain FDY98_RS17485 PF13525 Outer membrane lipoprotein FDY98_RS17490 PF02203 Tar ligand binding domain homologue FDY98_RS17490 PF00672 HAMP domain FDY98_RS17490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS17495 PF03707 Bacterial signalling protein N terminal repeat FDY98_RS17495 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS17495 PF00563 EAL domain FDY98_RS17510 PF01266 FAD dependent oxidoreductase FDY98_RS17530 PF03949 Malic enzyme, NAD binding domain FDY98_RS17530 PF00390 Malic enzyme, N-terminal domain FDY98_RS17535 PF04143 Sulphur transport FDY98_RS17585 PF04740 LXG domain of WXG superfamily FDY98_RS17585 PF14449 Pre-toxin TG FDY98_RS17585 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues FDY98_RS17625 PF06744 Type VI secretion protein IcmF C-terminal FDY98_RS17625 PF06761 Intracellular multiplication and human macrophage-killing FDY98_RS17625 PF14331 ImcF-related N-terminal domain FDY98_RS17645 PF10431 C-terminal, D2-small domain, of ClpB protein FDY98_RS17645 PF00004 ATPase family associated with various cellular activities (AAA) FDY98_RS17645 PF07724 AAA domain (Cdc48 subfamily) FDY98_RS17645 PF17871 AAA lid domain FDY98_RS17655 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE FDY98_RS17685 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath FDY98_RS17700 PF00579 tRNA synthetases class I (W and Y) FDY98_RS17715 PF07963 Prokaryotic N-terminal methylation motif FDY98_RS17725 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor FDY98_RS17725 PF07963 Prokaryotic N-terminal methylation motif FDY98_RS17730 PF02401 LytB protein FDY98_RS17735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FDY98_RS17740 PF01252 Signal peptidase (SPase) II FDY98_RS17745 PF06827 Zinc finger found in FPG and IleRS FDY98_RS17745 PF08264 Anticodon-binding domain of tRNA FDY98_RS17745 PF00133 tRNA synthetases class I (I, L, M and V) FDY98_RS17750 PF06574 FAD synthetase FDY98_RS17750 PF01687 Riboflavin kinase FDY98_RS17755 PF03023 Lipid II flippase MurJ FDY98_RS17760 PF01649 Ribosomal protein S20 FDY98_RS17765 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS17765 PF00072 Response regulator receiver domain FDY98_RS17785 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS17790 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS17805 PF02465 Flagellar hook-associated protein 2 N-terminus FDY98_RS17805 PF07195 Flagellar hook-associated protein 2 C-terminus FDY98_RS17810 PF02465 Flagellar hook-associated protein 2 N-terminus FDY98_RS17810 PF07195 Flagellar hook-associated protein 2 C-terminus FDY98_RS17815 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FDY98_RS17815 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FDY98_RS17815 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FDY98_RS17895 PF08402 TOBE domain FDY98_RS17895 PF00005 ABC transporter FDY98_RS17900 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain FDY98_RS17900 PF04616 Glycosyl hydrolases family 43 FDY98_RS17905 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS17910 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS17925 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FDY98_RS17925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDY98_RS17935 PF13407 Periplasmic binding protein domain FDY98_RS17940 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS17960 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS17970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FDY98_RS17980 PF03466 LysR substrate binding domain FDY98_RS17980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS17985 PF00920 Dehydratase family FDY98_RS18010 PF00171 Aldehyde dehydrogenase family FDY98_RS18045 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDY98_RS18045 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDY98_RS18060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDY98_RS18075 PF00920 Dehydratase family FDY98_RS18080 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS18085 PF07729 FCD domain FDY98_RS18085 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS18090 PF02615 Malate/L-lactate dehydrogenase FDY98_RS18095 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS18100 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FDY98_RS18105 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS18110 PF07005 Sugar-binding N-terminal domain FDY98_RS18110 PF17042 Nucleotide-binding C-terminal domain FDY98_RS18115 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FDY98_RS18135 PF02913 FAD linked oxidases, C-terminal domain FDY98_RS18135 PF01565 FAD binding domain FDY98_RS18145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS18155 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS18160 PF03466 LysR substrate binding domain FDY98_RS18160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS18165 PF02515 CoA-transferase family III FDY98_RS18170 PF00682 HMGL-like FDY98_RS18195 PF00158 Sigma-54 interaction domain FDY98_RS18195 PF00989 PAS fold FDY98_RS18195 PF02954 Bacterial regulatory protein, Fis family FDY98_RS18200 PF00005 ABC transporter FDY98_RS18200 PF17912 MalK OB fold domain FDY98_RS18210 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS18250 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS18255 PF07690 Major Facilitator Superfamily FDY98_RS18270 PF00596 Class II Aldolase and Adducin N-terminal domain FDY98_RS18280 PF03079 ARD/ARD' family FDY98_RS18285 PF01636 Phosphotransferase enzyme family FDY98_RS18300 PF01258 Prokaryotic dksA/traR C4-type zinc finger FDY98_RS18320 PF08402 TOBE domain FDY98_RS18320 PF00005 ABC transporter FDY98_RS18325 PF16123 Hydroxyacylglutathione hydrolase C-terminus FDY98_RS18325 PF00753 Metallo-beta-lactamase superfamily FDY98_RS18335 PF07690 Major Facilitator Superfamily FDY98_RS18340 PF12833 Helix-turn-helix domain FDY98_RS18340 PF01965 DJ-1/PfpI family FDY98_RS18345 PF07729 FCD domain FDY98_RS18345 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS18370 PF00501 AMP-binding enzyme FDY98_RS18370 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS18405 PF00672 HAMP domain FDY98_RS18405 PF12729 Four helix bundle sensory module for signal transduction FDY98_RS18405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS18410 PF00072 Response regulator receiver domain FDY98_RS18410 PF01339 CheB methylesterase FDY98_RS18415 PF01739 CheR methyltransferase, SAM binding domain FDY98_RS18415 PF03705 CheR methyltransferase, all-alpha domain FDY98_RS18420 PF01627 Hpt domain FDY98_RS18420 PF01584 CheW-like domain FDY98_RS18420 PF00072 Response regulator receiver domain FDY98_RS18420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS18445 PF03454 MoeA C-terminal region (domain IV) FDY98_RS18445 PF03453 MoeA N-terminal region (domain I and II) FDY98_RS18445 PF00994 Probable molybdopterin binding domain FDY98_RS18450 PF00368 Hydroxymethylglutaryl-coenzyme A reductase FDY98_RS18455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS18470 PF00155 Aminotransferase class I and II FDY98_RS18470 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS18475 PF00994 Probable molybdopterin binding domain FDY98_RS18490 PF13247 4Fe-4S dicluster domain FDY98_RS18525 PF02634 FdhD/NarQ family FDY98_RS18530 PF12804 MobA-like NTP transferase domain FDY98_RS18545 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDY98_RS18545 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDY98_RS18550 PF03707 Bacterial signalling protein N terminal repeat FDY98_RS18550 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS18550 PF00563 EAL domain FDY98_RS18560 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDY98_RS18565 PF00795 Carbon-nitrogen hydrolase FDY98_RS18570 PF01979 Amidohydrolase family FDY98_RS18575 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS18575 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FDY98_RS18580 PF01180 Dihydroorotate dehydrogenase FDY98_RS18585 PF01497 Periplasmic binding protein FDY98_RS18590 PF02203 Tar ligand binding domain homologue FDY98_RS18590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS18590 PF00672 HAMP domain FDY98_RS18605 PF08361 MAATS-type transcriptional repressor, C-terminal region FDY98_RS18605 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS18610 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS18620 PF00563 EAL domain FDY98_RS18620 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS18620 PF13188 PAS domain FDY98_RS18620 PF03707 Bacterial signalling protein N terminal repeat FDY98_RS18635 PF04073 Aminoacyl-tRNA editing domain FDY98_RS18640 PF00583 Acetyltransferase (GNAT) family FDY98_RS18645 PF00155 Aminotransferase class I and II FDY98_RS18645 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS18650 PF01066 CDP-alcohol phosphatidyltransferase FDY98_RS18655 PF03352 Methyladenine glycosylase FDY98_RS18670 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS18670 PF00155 Aminotransferase class I and II FDY98_RS18680 PF02567 Phenazine biosynthesis-like protein FDY98_RS18685 PF00011 Hsp20/alpha crystallin family FDY98_RS18700 PF01791 DeoC/LacD family aldolase FDY98_RS18710 PF00005 ABC transporter FDY98_RS18720 PF00593 TonB dependent receptor FDY98_RS18720 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS18745 PF01810 LysE type translocator FDY98_RS18750 PF07670 Nucleoside recognition FDY98_RS18755 PF01037 Lrp/AsnC ligand binding domain FDY98_RS18760 PF08362 YcdC-like protein, C-terminal region FDY98_RS18760 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS18765 PF00171 Aldehyde dehydrogenase family FDY98_RS18770 PF00202 Aminotransferase class-III FDY98_RS18775 PF01546 Peptidase family M20/M25/M40 FDY98_RS18775 PF07687 Peptidase dimerisation domain FDY98_RS18780 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS18780 PF00501 AMP-binding enzyme FDY98_RS18790 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS18795 PF02313 Fumarate reductase subunit D FDY98_RS18800 PF02300 Fumarate reductase subunit C FDY98_RS18805 PF13085 2Fe-2S iron-sulfur cluster binding domain FDY98_RS18805 PF13183 4Fe-4S dicluster domain FDY98_RS18810 PF00890 FAD binding domain FDY98_RS18810 PF02910 Fumarate reductase flavoprotein C-term FDY98_RS18815 PF00939 Sodium:sulfate symporter transmembrane region FDY98_RS18825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDY98_RS18825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDY98_RS18825 PF16582 Middle domain of thiamine pyrophosphate FDY98_RS18840 PF01040 UbiA prenyltransferase family FDY98_RS18845 PF03992 Antibiotic biosynthesis monooxygenase FDY98_RS18860 PF00202 Aminotransferase class-III FDY98_RS18915 PF00120 Glutamine synthetase, catalytic domain FDY98_RS18920 PF01266 FAD dependent oxidoreductase FDY98_RS18935 PF03606 C4-dicarboxylate anaerobic carrier FDY98_RS18945 PF07687 Peptidase dimerisation domain FDY98_RS18945 PF01546 Peptidase family M20/M25/M40 FDY98_RS18955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDY98_RS18960 PF04371 Porphyromonas-type peptidyl-arginine deiminase FDY98_RS18970 PF00202 Aminotransferase class-III FDY98_RS18975 PF01546 Peptidase family M20/M25/M40 FDY98_RS18975 PF07687 Peptidase dimerisation domain FDY98_RS18980 PF00171 Aldehyde dehydrogenase family FDY98_RS19000 PF12848 ABC transporter FDY98_RS19000 PF00005 ABC transporter FDY98_RS19030 PF18158 Adaptive response protein AidB N-terminal domain FDY98_RS19030 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS19030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS19035 PF01266 FAD dependent oxidoreductase FDY98_RS19045 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS19055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS19060 PF01427 D-ala-D-ala dipeptidase FDY98_RS19065 PF00005 ABC transporter FDY98_RS19070 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS19075 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS19095 PF00106 short chain dehydrogenase FDY98_RS19100 PF00873 AcrB/AcrD/AcrF family FDY98_RS19135 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS19140 PF01370 NAD dependent epimerase/dehydratase family FDY98_RS19145 PF01261 Xylose isomerase-like TIM barrel FDY98_RS19150 PF00596 Class II Aldolase and Adducin N-terminal domain FDY98_RS19155 PF17042 Nucleotide-binding C-terminal domain FDY98_RS19155 PF07005 Sugar-binding N-terminal domain FDY98_RS19165 PF00356 Bacterial regulatory proteins, lacI family FDY98_RS19165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FDY98_RS19170 PF01425 Amidase FDY98_RS19180 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS19190 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS19200 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS19200 PF07729 FCD domain FDY98_RS19205 PF03466 LysR substrate binding domain FDY98_RS19205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS19210 PF13460 NAD(P)H-binding FDY98_RS19215 PF00561 alpha/beta hydrolase fold FDY98_RS19220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS19220 PF03466 LysR substrate binding domain FDY98_RS19240 PF00593 TonB dependent receptor FDY98_RS19240 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS19245 PF05171 Haemin-degrading HemS.ChuX domain FDY98_RS19250 PF01497 Periplasmic binding protein FDY98_RS19255 PF01032 FecCD transport family FDY98_RS19260 PF00005 ABC transporter FDY98_RS19265 PF04304 Protein of unknown function (DUF454) FDY98_RS19270 PF01037 Lrp/AsnC ligand binding domain FDY98_RS19275 PF00291 Pyridoxal-phosphate dependent enzyme FDY98_RS19285 PF01769 Divalent cation transporter FDY98_RS19285 PF03448 MgtE intracellular N domain FDY98_RS19285 PF00571 CBS domain FDY98_RS19290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FDY98_RS19290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDY98_RS19295 PF00171 Aldehyde dehydrogenase family FDY98_RS19310 PF00294 pfkB family carbohydrate kinase FDY98_RS19320 PF00005 ABC transporter FDY98_RS19335 PF01418 Helix-turn-helix domain, rpiR family FDY98_RS19335 PF01380 SIS domain FDY98_RS19340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FDY98_RS19340 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FDY98_RS19345 PF04962 KduI/IolB family FDY98_RS19360 PF03527 RHS protein FDY98_RS19360 PF15606 Bacterial toxin 34 FDY98_RS19360 PF05593 RHS Repeat FDY98_RS19365 PF05593 RHS Repeat FDY98_RS19365 PF03527 RHS protein FDY98_RS19365 PF14220 Domain of unknown function (DUF4329) FDY98_RS19415 PF07702 UTRA domain FDY98_RS19415 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS19425 PF01348 Type II intron maturase FDY98_RS19425 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FDY98_RS19455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS19455 PF03466 LysR substrate binding domain FDY98_RS19460 PF03746 LamB/YcsF family FDY98_RS19465 PF02682 Carboxyltransferase domain, subdomain C and D FDY98_RS19470 PF02626 Carboxyltransferase domain, subdomain A and B FDY98_RS19480 PF00474 Sodium:solute symporter family FDY98_RS19495 PF01799 [2Fe-2S] binding domain FDY98_RS19495 PF00111 2Fe-2S iron-sulfur cluster binding domain FDY98_RS19500 PF01494 FAD binding domain FDY98_RS19505 PF00561 alpha/beta hydrolase fold FDY98_RS19510 PF17645 Arylmalonate decarboxylase FDY98_RS19515 PF00857 Isochorismatase family FDY98_RS19520 PF12802 MarR family FDY98_RS19525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FDY98_RS19525 PF00034 Cytochrome c FDY98_RS19525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FDY98_RS19540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS19540 PF02203 Tar ligand binding domain homologue FDY98_RS19540 PF00672 HAMP domain FDY98_RS19550 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS19550 PF07702 UTRA domain FDY98_RS19580 PF03466 LysR substrate binding domain FDY98_RS19580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS19590 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS19600 PF17645 Arylmalonate decarboxylase FDY98_RS19605 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS19610 PF01546 Peptidase family M20/M25/M40 FDY98_RS19610 PF07687 Peptidase dimerisation domain FDY98_RS19620 PF01042 Endoribonuclease L-PSP FDY98_RS19625 PF08402 TOBE domain FDY98_RS19625 PF00005 ABC transporter FDY98_RS19645 PF01220 Dehydroquinase class II FDY98_RS19650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS19670 PF01613 Flavin reductase like domain FDY98_RS19710 PF00072 Response regulator receiver domain FDY98_RS19710 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS19715 PF00672 HAMP domain FDY98_RS19715 PF00989 PAS fold FDY98_RS19715 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS19715 PF18698 Histidine kinase sensor domain FDY98_RS19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS19720 PF02233 NAD(P) transhydrogenase beta subunit FDY98_RS19725 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FDY98_RS19725 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FDY98_RS19725 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FDY98_RS19735 PF00491 Arginase family FDY98_RS19740 PF01053 Cys/Met metabolism PLP-dependent enzyme FDY98_RS19755 PF13746 4Fe-4S dicluster domain FDY98_RS19755 PF12801 4Fe-4S binding domain FDY98_RS19755 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase FDY98_RS19760 PF00155 Aminotransferase class I and II FDY98_RS19760 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS19770 PF00551 Formyl transferase FDY98_RS19780 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS19780 PF08669 Glycine cleavage T-protein C-terminal barrel domain FDY98_RS19780 PF01571 Aminomethyltransferase folate-binding domain FDY98_RS19780 PF17806 Sarcosine oxidase A3 domain FDY98_RS19790 PF01266 FAD dependent oxidoreductase FDY98_RS19795 PF00464 Serine hydroxymethyltransferase FDY98_RS19805 PF00355 Rieske [2Fe-2S] domain FDY98_RS19805 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FDY98_RS19810 PF02909 Tetracyclin repressor-like, C-terminal domain FDY98_RS19810 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS19830 PF00107 Zinc-binding dehydrogenase FDY98_RS19830 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS19835 PF02028 BCCT, betaine/carnitine/choline family transporter FDY98_RS19870 PF01244 Membrane dipeptidase (Peptidase family M19) FDY98_RS19915 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FDY98_RS19915 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FDY98_RS19920 PF01272 Transcription elongation factor, GreA/GreB, C-term FDY98_RS19920 PF14760 Rnk N-terminus FDY98_RS19930 PF00132 Bacterial transferase hexapeptide (six repeats) FDY98_RS19935 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS19945 PF03061 Thioesterase superfamily FDY98_RS19955 PF05138 Phenylacetic acid catabolic protein FDY98_RS19960 PF06243 Phenylacetic acid degradation B FDY98_RS19970 PF01883 Iron-sulfur cluster assembly protein FDY98_RS19975 PF00970 Oxidoreductase FAD-binding domain FDY98_RS19975 PF00111 2Fe-2S iron-sulfur cluster binding domain FDY98_RS19975 PF00175 Oxidoreductase NAD-binding domain FDY98_RS19980 PF00171 Aldehyde dehydrogenase family FDY98_RS19980 PF01575 MaoC like domain FDY98_RS19985 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS20000 PF01047 MarR family FDY98_RS20010 PF08669 Glycine cleavage T-protein C-terminal barrel domain FDY98_RS20010 PF01571 Aminomethyltransferase folate-binding domain FDY98_RS20010 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS20010 PF17806 Sarcosine oxidase A3 domain FDY98_RS20020 PF04209 homogentisate 1,2-dioxygenase FDY98_RS20030 PF02798 Glutathione S-transferase, N-terminal domain FDY98_RS20030 PF14497 Glutathione S-transferase, C-terminal domain FDY98_RS20035 PF07690 Major Facilitator Superfamily FDY98_RS20055 PF18024 Helix-turn-helix domain FDY98_RS20055 PF00158 Sigma-54 interaction domain FDY98_RS20060 PF01037 Lrp/AsnC ligand binding domain FDY98_RS20065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FDY98_RS20085 PF01614 Bacterial transcriptional regulator FDY98_RS20085 PF09339 IclR helix-turn-helix domain FDY98_RS20095 PF14537 Cytochrome c3 FDY98_RS20095 PF00890 FAD binding domain FDY98_RS20100 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS20100 PF07729 FCD domain FDY98_RS20105 PF00171 Aldehyde dehydrogenase family FDY98_RS20120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDY98_RS20120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDY98_RS20125 PF08450 SMP-30/Gluconolactonase/LRE-like region FDY98_RS20135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS20150 PF00175 Oxidoreductase NAD-binding domain FDY98_RS20150 PF00111 2Fe-2S iron-sulfur cluster binding domain FDY98_RS20150 PF00970 Oxidoreductase FAD-binding domain FDY98_RS20155 PF02798 Glutathione S-transferase, N-terminal domain FDY98_RS20185 PF01311 Bacterial export proteins, family 1 FDY98_RS20190 PF01313 Bacterial export proteins, family 3 FDY98_RS20195 PF00813 FliP family FDY98_RS20200 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FDY98_RS20210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FDY98_RS20210 PF18269 T3SS EscN ATPase C-terminal domain FDY98_RS20210 PF02874 ATP synthase alpha/beta family, beta-barrel domain FDY98_RS20215 PF02108 Flagellar assembly protein FliH FDY98_RS20225 PF01514 Secretory protein of YscJ/FliF family FDY98_RS20260 PF00771 FHIPEP family FDY98_RS20275 PF16697 Inner membrane component of T3SS, cytoplasmic domain FDY98_RS20275 PF16693 Inner membrane component of T3SS, periplasmic domain FDY98_RS20285 PF13462 Thioredoxin FDY98_RS20320 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS20325 PF03466 LysR substrate binding domain FDY98_RS20325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS20330 PF13276 HTH-like domain FDY98_RS20330 PF13683 Integrase core domain FDY98_RS20350 PF01014 Uricase FDY98_RS20350 PF09349 OHCU decarboxylase FDY98_RS20370 PF02887 Pyruvate kinase, alpha/beta domain FDY98_RS20370 PF00224 Pyruvate kinase, barrel domain FDY98_RS20380 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FDY98_RS20380 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FDY98_RS20385 PF01261 Xylose isomerase-like TIM barrel FDY98_RS20390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FDY98_RS20390 PF00205 Thiamine pyrophosphate enzyme, central domain FDY98_RS20390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FDY98_RS20395 PF05899 Protein of unknown function (DUF861) FDY98_RS20395 PF07883 Cupin domain FDY98_RS20400 PF09339 IclR helix-turn-helix domain FDY98_RS20400 PF01614 Bacterial transcriptional regulator FDY98_RS20430 PF02293 AmiS/UreI family transporter FDY98_RS20435 PF03466 LysR substrate binding domain FDY98_RS20435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS20440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS20440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDY98_RS20440 PF01842 ACT domain FDY98_RS20445 PF03737 Aldolase/RraA FDY98_RS20480 PF03401 Tripartite tricarboxylate transporter family receptor FDY98_RS20485 PF03401 Tripartite tricarboxylate transporter family receptor FDY98_RS20495 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS20500 PF08402 TOBE domain FDY98_RS20500 PF00005 ABC transporter FDY98_RS20525 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS20525 PF07702 UTRA domain FDY98_RS20550 PF07690 Major Facilitator Superfamily FDY98_RS20555 PF01522 Polysaccharide deacetylase FDY98_RS20560 PF07702 UTRA domain FDY98_RS20560 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS20565 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FDY98_RS20570 PF01425 Amidase FDY98_RS20580 PF07683 Cobalamin synthesis protein cobW C-terminal domain FDY98_RS20580 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDY98_RS20590 PF01497 Periplasmic binding protein FDY98_RS20595 PF00593 TonB dependent receptor FDY98_RS20595 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS20600 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS20600 PF00593 TonB dependent receptor FDY98_RS20645 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS20650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS20650 PF03466 LysR substrate binding domain FDY98_RS20655 PF01565 FAD binding domain FDY98_RS20655 PF02913 FAD linked oxidases, C-terminal domain FDY98_RS20660 PF03480 Bacterial extracellular solute-binding protein, family 7 FDY98_RS20665 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FDY98_RS20665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS20690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS20705 PF00037 4Fe-4S binding domain FDY98_RS20705 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FDY98_RS20705 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FDY98_RS20710 PF01568 Molydopterin dinucleotide binding domain FDY98_RS20710 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FDY98_RS20710 PF00384 Molybdopterin oxidoreductase FDY98_RS20710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FDY98_RS20710 PF12838 4Fe-4S dicluster domain FDY98_RS20715 PF02634 FdhD/NarQ family FDY98_RS20725 PF17200 Single Cache domain 2 FDY98_RS20725 PF07730 Histidine kinase FDY98_RS20730 PF03631 Virulence factor BrkB FDY98_RS20735 PF02492 CobW/HypB/UreG, nucleotide-binding domain FDY98_RS20745 PF05194 UreE urease accessory protein, C-terminal domain FDY98_RS20745 PF02814 UreE urease accessory protein, N-terminal domain FDY98_RS20755 PF00699 Urease beta subunit FDY98_RS20760 PF00547 Urease, gamma subunit FDY98_RS20765 PF01774 UreD urease accessory protein FDY98_RS20775 PF01297 Zinc-uptake complex component A periplasmic FDY98_RS20780 PF00005 ABC transporter FDY98_RS20785 PF00950 ABC 3 transport family FDY98_RS20795 PF00005 ABC transporter FDY98_RS20800 PF00005 ABC transporter FDY98_RS20800 PF12399 Branched-chain amino acid ATP-binding cassette transporter FDY98_RS20810 PF02653 Branched-chain amino acid transport system / permease component FDY98_RS20835 PF12431 Transcriptional regulator FDY98_RS20835 PF00072 Response regulator receiver domain FDY98_RS20840 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain FDY98_RS20840 PF17203 Single cache domain 3 FDY98_RS20840 PF00989 PAS fold FDY98_RS20840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS20850 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS20855 PF00005 ABC transporter FDY98_RS20865 PF02028 BCCT, betaine/carnitine/choline family transporter FDY98_RS20870 PF08884 Flagellin D3 domain FDY98_RS20870 PF00700 Bacterial flagellin C-terminal helical region FDY98_RS20870 PF00669 Bacterial flagellin N-terminal helical region FDY98_RS20875 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FDY98_RS20885 PF00924 Mechanosensitive ion channel FDY98_RS20890 PF09335 SNARE associated Golgi protein FDY98_RS20895 PF01614 Bacterial transcriptional regulator FDY98_RS20895 PF09339 IclR helix-turn-helix domain FDY98_RS20915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS20915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDY98_RS20920 PF02609 Exonuclease VII small subunit FDY98_RS20925 PF00348 Polyprenyl synthetase FDY98_RS20930 PF02779 Transketolase, pyrimidine binding domain FDY98_RS20930 PF02780 Transketolase, C-terminal domain FDY98_RS20930 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FDY98_RS20935 PF05099 Tellurite resistance protein TerB FDY98_RS20935 PF00226 DnaJ domain FDY98_RS20940 PF00106 short chain dehydrogenase FDY98_RS20945 PF12833 Helix-turn-helix domain FDY98_RS20945 PF02311 AraC-like ligand binding domain FDY98_RS20955 PF04344 Chemotaxis phosphatase, CheZ FDY98_RS20960 PF03006 Haemolysin-III related FDY98_RS20970 PF03069 Acetamidase/Formamidase family FDY98_RS20975 PF07724 AAA domain (Cdc48 subfamily) FDY98_RS20975 PF10431 C-terminal, D2-small domain, of ClpB protein FDY98_RS20980 PF00795 Carbon-nitrogen hydrolase FDY98_RS20985 PF00005 ABC transporter FDY98_RS20990 PF00005 ABC transporter FDY98_RS21020 PF00925 GTP cyclohydrolase II FDY98_RS21025 PF01208 Uroporphyrinogen decarboxylase (URO-D) FDY98_RS21030 PF17284 Spermidine synthase tetramerisation domain FDY98_RS21035 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS21040 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS21050 PF00005 ABC transporter FDY98_RS21055 PF01042 Endoribonuclease L-PSP FDY98_RS21075 PF00005 ABC transporter FDY98_RS21080 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS21095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS21095 PF02743 Cache domain FDY98_RS21095 PF00672 HAMP domain FDY98_RS21100 PF00672 HAMP domain FDY98_RS21100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS21105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS21105 PF03466 LysR substrate binding domain FDY98_RS21110 PF00970 Oxidoreductase FAD-binding domain FDY98_RS21110 PF00175 Oxidoreductase NAD-binding domain FDY98_RS21115 PF00543 Nitrogen regulatory protein P-II FDY98_RS21120 PF00909 Ammonium Transporter Family FDY98_RS21125 PF00543 Nitrogen regulatory protein P-II FDY98_RS21175 PF15937 prlF antitoxin for toxin YhaV_toxin FDY98_RS21195 PF01545 Cation efflux family FDY98_RS21200 PF13462 Thioredoxin FDY98_RS21200 PF06965 Na+/H+ antiporter 1 FDY98_RS21205 PF01551 Peptidase family M23 FDY98_RS21210 PF02535 ZIP Zinc transporter FDY98_RS21215 PF13411 MerR HTH family regulatory protein FDY98_RS21225 PF01252 Signal peptidase (SPase) II FDY98_RS21255 PF02082 Transcriptional regulator FDY98_RS21280 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FDY98_RS21310 PF04287 tRNA pseudouridine synthase C FDY98_RS21335 PF02698 DUF218 domain FDY98_RS21340 PF01883 Iron-sulfur cluster assembly protein FDY98_RS21355 PF00005 ABC transporter FDY98_RS21365 PF02082 Transcriptional regulator FDY98_RS21375 PF03831 PhnA domain FDY98_RS21375 PF08274 PhnA Zinc-Ribbon FDY98_RS21400 PF02803 Thiolase, C-terminal domain FDY98_RS21400 PF00108 Thiolase, N-terminal domain FDY98_RS21405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDY98_RS21405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDY98_RS21405 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS21415 PF01047 MarR family FDY98_RS21450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FDY98_RS21450 PF02770 Acyl-CoA dehydrogenase, middle domain FDY98_RS21450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FDY98_RS21455 PF00501 AMP-binding enzyme FDY98_RS21455 PF13193 AMP-binding enzyme C-terminal domain FDY98_RS21465 PF01026 TatD related DNase FDY98_RS21475 PF04315 Elongation factor P hydroxylase FDY98_RS21495 PF01206 Sulfurtransferase TusA FDY98_RS21500 PF03992 Antibiotic biosynthesis monooxygenase FDY98_RS21505 PF01728 FtsJ-like methyltransferase FDY98_RS21505 PF18125 RlmM ferredoxin-like domain FDY98_RS21540 PF17932 Tetracyclin repressor-like, C-terminal domain FDY98_RS21540 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS21550 PF03600 Citrate transporter FDY98_RS21555 PF02203 Tar ligand binding domain homologue FDY98_RS21555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FDY98_RS21555 PF00672 HAMP domain FDY98_RS21565 PF03358 NADPH-dependent FMN reductase FDY98_RS21570 PF01758 Sodium Bile acid symporter family FDY98_RS21580 PF01053 Cys/Met metabolism PLP-dependent enzyme FDY98_RS21590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FDY98_RS21590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FDY98_RS21640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FDY98_RS21640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FDY98_RS21665 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FDY98_RS21665 PF00326 Prolyl oligopeptidase family FDY98_RS21670 PF03692 Putative zinc- or iron-chelating domain FDY98_RS21680 PF05166 YcgL domain FDY98_RS21685 PF01612 3'-5' exonuclease FDY98_RS21685 PF00570 HRDC domain FDY98_RS21690 PF02132 RecR protein FDY98_RS21690 PF13662 Toprim domain FDY98_RS21695 PF02575 YbaB/EbfC DNA-binding family FDY98_RS21700 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FDY98_RS21700 PF12170 DNA polymerase III tau subunit V interacting with alpha FDY98_RS21700 PF12169 DNA polymerase III subunits gamma and tau domain III FDY98_RS21705 PF00462 Glutaredoxin FDY98_RS21720 PF00196 Bacterial regulatory proteins, luxR family FDY98_RS21720 PF00072 Response regulator receiver domain FDY98_RS21725 PF02151 UvrB/uvrC motif FDY98_RS21725 PF08459 UvrC Helix-hairpin-helix N-terminal FDY98_RS21725 PF01541 GIY-YIG catalytic domain FDY98_RS21730 PF01066 CDP-alcohol phosphatidyltransferase FDY98_RS21760 PF03937 Flavinator of succinate dehydrogenase FDY98_RS21765 PF00216 Bacterial DNA-binding protein FDY98_RS21775 PF18073 Rubredoxin metal binding domain FDY98_RS21780 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FDY98_RS21795 PF04303 PrpF protein FDY98_RS21800 PF00694 Aconitase C-terminal domain FDY98_RS21800 PF00330 Aconitase family (aconitate hydratase) FDY98_RS21805 PF00285 Citrate synthase, C-terminal domain FDY98_RS21815 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS21815 PF07729 FCD domain FDY98_RS21820 PF00425 chorismate binding enzyme FDY98_RS21820 PF04715 Anthranilate synthase component I, N terminal region FDY98_RS21835 PF00085 Thioredoxin FDY98_RS21840 PF01594 AI-2E family transporter FDY98_RS21850 PF02403 Seryl-tRNA synthetase N-terminal domain FDY98_RS21850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FDY98_RS21875 PF00591 Glycosyl transferase family, a/b domain FDY98_RS21875 PF02885 Glycosyl transferase family, helical bundle domain FDY98_RS21880 PF00117 Glutamine amidotransferase class-I FDY98_RS21885 PF01297 Zinc-uptake complex component A periplasmic FDY98_RS21890 PF13419 Haloacid dehalogenase-like hydrolase FDY98_RS21900 PF00834 Ribulose-phosphate 3 epimerase family FDY98_RS21910 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS21930 PF00892 EamA-like transporter family FDY98_RS21940 PF05724 Thiopurine S-methyltransferase (TPMT) FDY98_RS21945 PF08239 Bacterial SH3 domain FDY98_RS21965 PF01728 FtsJ-like methyltransferase FDY98_RS21965 PF01479 S4 domain FDY98_RS21975 PF02253 Phospholipase A1 FDY98_RS21980 PF05957 Bacterial protein of unknown function (DUF883) FDY98_RS22000 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS22000 PF00107 Zinc-binding dehydrogenase FDY98_RS22015 PF02830 V4R domain FDY98_RS22015 PF06505 Activator of aromatic catabolism FDY98_RS22015 PF02954 Bacterial regulatory protein, Fis family FDY98_RS22015 PF00158 Sigma-54 interaction domain FDY98_RS22050 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS22075 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS22075 PF13192 Thioredoxin domain FDY98_RS22080 PF00561 alpha/beta hydrolase fold FDY98_RS22080 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus FDY98_RS22095 PF01264 Chorismate synthase FDY98_RS22125 PF00005 ABC transporter FDY98_RS22255 PF01740 STAS domain FDY98_RS22255 PF13426 PAS domain FDY98_RS22275 PF03232 Ubiquinone biosynthesis protein COQ7 FDY98_RS22295 PF02844 Phosphoribosylglycinamide synthetase, N domain FDY98_RS22295 PF02843 Phosphoribosylglycinamide synthetase, C domain FDY98_RS22295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FDY98_RS22300 PF07879 PHB/PHA accumulation regulator DNA-binding domain FDY98_RS22300 PF05233 PHB accumulation regulatory domain FDY98_RS22310 PF18030 RimK PreATP-grasp domain FDY98_RS22310 PF08443 RimK-like ATP-grasp domain FDY98_RS22315 PF13406 Transglycosylase SLT domain FDY98_RS22335 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FDY98_RS22345 PF00361 Proton-conducting membrane transporter FDY98_RS22355 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FDY98_RS22360 PF13244 Domain of unknown function (DUF4040) FDY98_RS22360 PF00361 Proton-conducting membrane transporter FDY98_RS22360 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FDY98_RS22390 PF00772 DnaB-like helicase N terminal domain FDY98_RS22390 PF03796 DnaB-like helicase C terminal domain FDY98_RS22405 PF01084 Ribosomal protein S18 FDY98_RS22410 PF01250 Ribosomal protein S6 FDY98_RS22420 PF00575 S1 RNA binding domain FDY98_RS22420 PF08461 Ribonuclease R winged-helix domain FDY98_RS22420 PF08206 Ribonuclease B OB domain FDY98_RS22420 PF17876 Cold shock domain FDY98_RS22420 PF00773 RNB domain FDY98_RS22440 PF02028 BCCT, betaine/carnitine/choline family transporter FDY98_RS22450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS22450 PF03466 LysR substrate binding domain FDY98_RS22455 PF01223 DNA/RNA non-specific endonuclease FDY98_RS22465 PF01355 High potential iron-sulfur protein FDY98_RS22485 PF01212 Beta-eliminating lyase FDY98_RS22490 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS22490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FDY98_RS22495 PF00892 EamA-like transporter family FDY98_RS22500 PF00583 Acetyltransferase (GNAT) family FDY98_RS22500 PF00795 Carbon-nitrogen hydrolase FDY98_RS22510 PF02525 Flavodoxin-like fold FDY98_RS22515 PF01235 Sodium:alanine symporter family FDY98_RS22520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS22520 PF03466 LysR substrate binding domain FDY98_RS22525 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FDY98_RS22525 PF06155 Protein of unknown function (DUF971) FDY98_RS22545 PF01894 Uncharacterised protein family UPF0047 FDY98_RS22550 PF08212 Lipocalin-like domain FDY98_RS22560 PF00180 Isocitrate/isopropylmalate dehydrogenase FDY98_RS22570 PF03358 NADPH-dependent FMN reductase FDY98_RS22580 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FDY98_RS22590 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS22600 PF00497 Bacterial extracellular solute-binding proteins, family 3 FDY98_RS22615 PF02222 ATP-grasp domain FDY98_RS22615 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FDY98_RS22635 PF00920 Dehydratase family FDY98_RS22640 PF05973 Phage derived protein Gp49-like (DUF891) FDY98_RS22645 PF01381 Helix-turn-helix FDY98_RS22650 PF17946 RecC C-terminal domain FDY98_RS22665 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FDY98_RS22665 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FDY98_RS22680 PF00795 Carbon-nitrogen hydrolase FDY98_RS22685 PF00474 Sodium:solute symporter family FDY98_RS22690 PF03466 LysR substrate binding domain FDY98_RS22690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS22700 PF13538 UvrD-like helicase C-terminal domain FDY98_RS22710 PF00313 'Cold-shock' DNA-binding domain FDY98_RS22725 PF02574 Homocysteine S-methyltransferase FDY98_RS22750 PF03466 LysR substrate binding domain FDY98_RS22750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS22770 PF13419 Haloacid dehalogenase-like hydrolase FDY98_RS22775 PF07690 Major Facilitator Superfamily FDY98_RS22785 PF03831 PhnA domain FDY98_RS22785 PF08274 PhnA Zinc-Ribbon FDY98_RS22820 PF01638 HxlR-like helix-turn-helix FDY98_RS22845 PF00106 short chain dehydrogenase FDY98_RS22880 PF00795 Carbon-nitrogen hydrolase FDY98_RS22880 PF02540 NAD synthase FDY98_RS22900 PF00290 Tryptophan synthase alpha chain FDY98_RS22905 PF00291 Pyridoxal-phosphate dependent enzyme FDY98_RS22910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS22910 PF03466 LysR substrate binding domain FDY98_RS22915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS22915 PF03466 LysR substrate binding domain FDY98_RS22920 PF02525 Flavodoxin-like fold FDY98_RS22930 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system FDY98_RS22935 PF13649 Methyltransferase domain FDY98_RS22940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS22940 PF03466 LysR substrate binding domain FDY98_RS22945 PF00248 Aldo/keto reductase family FDY98_RS22985 PF03009 Glycerophosphoryl diester phosphodiesterase family FDY98_RS22990 PF00701 Dihydrodipicolinate synthetase family FDY98_RS23005 PF03707 Bacterial signalling protein N terminal repeat FDY98_RS23005 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS23005 PF00563 EAL domain FDY98_RS23020 PF15887 Putative zinc-binding metallo-peptidase FDY98_RS23020 PF10005 zinc-ribbon domain FDY98_RS23025 PF00881 Nitroreductase family FDY98_RS23035 PF08241 Methyltransferase domain FDY98_RS23065 PF13847 Methyltransferase domain FDY98_RS23065 PF17827 PrmC N-terminal domain FDY98_RS23070 PF03462 PCRF domain FDY98_RS23070 PF00472 RF-1 domain FDY98_RS23075 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FDY98_RS23075 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FDY98_RS23075 PF01488 Shikimate / quinate 5-dehydrogenase FDY98_RS23085 PF03550 Outer membrane lipoprotein LolB FDY98_RS23100 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FDY98_RS23100 PF14572 Phosphoribosyl synthetase-associated domain FDY98_RS23105 PF01386 Ribosomal L25p family FDY98_RS23105 PF14693 Ribosomal protein TL5, C-terminal domain FDY98_RS23110 PF01195 Peptidyl-tRNA hydrolase FDY98_RS23115 PF01926 50S ribosome-binding GTPase FDY98_RS23115 PF06071 Protein of unknown function (DUF933) FDY98_RS23125 PF02127 Aminopeptidase I zinc metalloprotease (M18) FDY98_RS23130 PF11818 C-terminal domain of tail specific protease (DUF3340) FDY98_RS23130 PF03572 Peptidase family S41 FDY98_RS23130 PF17804 Tail specific protease N-terminal domain FDY98_RS23130 PF00595 PDZ domain FDY98_RS23135 PF01022 Bacterial regulatory protein, arsR family FDY98_RS23155 PF00919 Uncharacterized protein family UPF0004 FDY98_RS23155 PF04055 Radical SAM superfamily FDY98_RS23155 PF01938 TRAM domain FDY98_RS23160 PF02562 PhoH-like protein FDY98_RS23165 PF02130 Uncharacterized protein family UPF0054 FDY98_RS23170 PF00571 CBS domain FDY98_RS23170 PF03471 Transporter associated domain FDY98_RS23175 PF00795 Carbon-nitrogen hydrolase FDY98_RS23180 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS23180 PF00107 Zinc-binding dehydrogenase FDY98_RS23185 PF06719 AraC-type transcriptional regulator N-terminus FDY98_RS23185 PF12833 Helix-turn-helix domain FDY98_RS23195 PF03466 LysR substrate binding domain FDY98_RS23195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS23200 PF12843 Putative quorum-sensing-regulated virulence factor FDY98_RS23230 PF13458 Periplasmic binding protein FDY98_RS23235 PF01613 Flavin reductase like domain FDY98_RS23240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS23240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FDY98_RS23245 PF00472 RF-1 domain FDY98_RS23255 PF05544 Proline racemase FDY98_RS23260 PF02801 Beta-ketoacyl synthase, C-terminal domain FDY98_RS23260 PF08659 KR domain FDY98_RS23260 PF00550 Phosphopantetheine attachment site FDY98_RS23260 PF14765 Polyketide synthase dehydratase FDY98_RS23260 PF00698 Acyl transferase domain FDY98_RS23260 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS23260 PF00107 Zinc-binding dehydrogenase FDY98_RS23260 PF16197 Ketoacyl-synthetase C-terminal extension FDY98_RS23260 PF00109 Beta-ketoacyl synthase, N-terminal domain FDY98_RS23270 PF01544 CorA-like Mg2+ transporter protein FDY98_RS23315 PF04168 A predicted alpha-helical domain with a conserved ER motif. FDY98_RS23315 PF14403 Circularly permuted ATP-grasp type 2 FDY98_RS23380 PF01425 Amidase FDY98_RS23385 PF03466 LysR substrate binding domain FDY98_RS23385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS23390 PF00583 Acetyltransferase (GNAT) family FDY98_RS23405 PF07694 5TMR of 5TMR-LYT FDY98_RS23405 PF00990 Diguanylate cyclase, GGDEF domain FDY98_RS23410 PF00881 Nitroreductase family FDY98_RS23435 PF13460 NAD(P)H-binding FDY98_RS23455 PF00158 Sigma-54 interaction domain FDY98_RS23455 PF13188 PAS domain FDY98_RS23455 PF02954 Bacterial regulatory protein, Fis family FDY98_RS23460 PF03606 C4-dicarboxylate anaerobic carrier FDY98_RS23475 PF00696 Amino acid kinase family FDY98_RS23480 PF04996 Succinylarginine dihydrolase FDY98_RS23485 PF00171 Aldehyde dehydrogenase family FDY98_RS23490 PF04958 Arginine N-succinyltransferase beta subunit FDY98_RS23500 PF00202 Aminotransferase class-III FDY98_RS23505 PF00106 short chain dehydrogenase FDY98_RS23520 PF12241 Trans-2-enoyl-CoA reductase catalytic region FDY98_RS23520 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FDY98_RS23520 PF07055 Enoyl reductase FAD binding domain FDY98_RS23530 PF00255 Glutathione peroxidase FDY98_RS23540 PF01709 Transcriptional regulator FDY98_RS23560 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS23560 PF00107 Zinc-binding dehydrogenase FDY98_RS23575 PF00885 6,7-dimethyl-8-ribityllumazine synthase FDY98_RS23600 PF03328 HpcH/HpaI aldolase/citrate lyase family FDY98_RS23610 PF13407 Periplasmic binding protein domain FDY98_RS23620 PF00005 ABC transporter FDY98_RS23630 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS23630 PF00107 Zinc-binding dehydrogenase FDY98_RS23645 PF02502 Ribose/Galactose Isomerase FDY98_RS23650 PF00923 Transaldolase/Fructose-6-phosphate aldolase FDY98_RS23665 PF00271 Helicase conserved C-terminal domain FDY98_RS23665 PF00270 DEAD/DEAH box helicase FDY98_RS23665 PF03880 DbpA RNA binding domain FDY98_RS23670 PF04073 Aminoacyl-tRNA editing domain FDY98_RS23700 PF03631 Virulence factor BrkB FDY98_RS23710 PF00361 Proton-conducting membrane transporter FDY98_RS23715 PF00361 Proton-conducting membrane transporter FDY98_RS23725 PF02230 Phospholipase/Carboxylesterase FDY98_RS23735 PF00313 'Cold-shock' DNA-binding domain FDY98_RS23750 PF03466 LysR substrate binding domain FDY98_RS23750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS23755 PF01625 Peptide methionine sulfoxide reductase FDY98_RS23760 PF00171 Aldehyde dehydrogenase family FDY98_RS23765 PF04608 Phosphatidylglycerophosphatase A FDY98_RS23780 PF00149 Calcineurin-like phosphoesterase FDY98_RS23780 PF12320 Type 5 capsule protein repressor C-terminal domain FDY98_RS23785 PF00939 Sodium:sulfate symporter transmembrane region FDY98_RS23800 PF08671 Anti-repressor SinI FDY98_RS23800 PF01381 Helix-turn-helix FDY98_RS23820 PF01032 FecCD transport family FDY98_RS23825 PF01032 FecCD transport family FDY98_RS23835 PF00005 ABC transporter FDY98_RS23840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FDY98_RS23860 PF00701 Dihydrodipicolinate synthetase family FDY98_RS23870 PF07729 FCD domain FDY98_RS23870 PF00392 Bacterial regulatory proteins, gntR family FDY98_RS23890 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS23895 PF00005 ABC transporter FDY98_RS23905 PF00593 TonB dependent receptor FDY98_RS23905 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS23920 PF01979 Amidohydrolase family FDY98_RS23930 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FDY98_RS24080 PF00005 ABC transporter FDY98_RS24080 PF00664 ABC transporter transmembrane region FDY98_RS24085 PF00005 ABC transporter FDY98_RS24090 PF01032 FecCD transport family FDY98_RS24100 PF01497 Periplasmic binding protein FDY98_RS24105 PF00593 TonB dependent receptor FDY98_RS24105 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS24110 PF07715 TonB-dependent Receptor Plug Domain FDY98_RS24110 PF00593 TonB dependent receptor FDY98_RS24115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS24115 PF03466 LysR substrate binding domain FDY98_RS24125 PF07995 Glucose / Sorbosone dehydrogenase FDY98_RS24130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS24130 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS24200 PF00912 Transglycosylase FDY98_RS24210 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS24210 PF00107 Zinc-binding dehydrogenase FDY98_RS24220 PF03466 LysR substrate binding domain FDY98_RS24220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS24225 PF03315 Serine dehydratase beta chain FDY98_RS24225 PF03313 Serine dehydratase alpha chain FDY98_RS24235 PF00140 Sigma-70 factor, region 1.2 FDY98_RS24235 PF04542 Sigma-70 region 2 FDY98_RS24235 PF04546 Sigma-70, non-essential region FDY98_RS24235 PF03979 Sigma-70 factor, region 1.1 FDY98_RS24235 PF04545 Sigma-70, region 4 FDY98_RS24235 PF04539 Sigma-70 region 3 FDY98_RS24240 PF08278 DNA primase DnaG DnaB-binding FDY98_RS24240 PF10410 DnaB-helicase binding domain of primase FDY98_RS24240 PF08275 DNA primase catalytic core, N-terminal domain FDY98_RS24240 PF13662 Toprim domain FDY98_RS24240 PF01807 CHC2 zinc finger FDY98_RS24245 PF01165 Ribosomal protein S21 FDY98_RS24250 PF00814 Glycoprotease family FDY98_RS24270 PF12627 Probable RNA and SrmB- binding site of polymerase A FDY98_RS24270 PF01743 Poly A polymerase head domain FDY98_RS24270 PF01966 HD domain FDY98_RS24275 PF00149 Calcineurin-like phosphoesterase FDY98_RS24295 PF00398 Ribosomal RNA adenine dimethylase FDY98_RS24300 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FDY98_RS24305 PF00639 PPIC-type PPIASE domain FDY98_RS24305 PF09312 SurA N-terminal domain FDY98_RS24320 PF00483 Nucleotidyl transferase FDY98_RS24330 PF02566 OsmC-like protein FDY98_RS24335 PF02675 S-adenosylmethionine decarboxylase FDY98_RS24340 PF03279 Bacterial lipid A biosynthesis acyltransferase FDY98_RS24345 PF01168 Alanine racemase, N-terminal domain FDY98_RS24345 PF00842 Alanine racemase, C-terminal domain FDY98_RS24350 PF04539 Sigma-70 region 3 FDY98_RS24350 PF04545 Sigma-70, region 4 FDY98_RS24350 PF00140 Sigma-70 factor, region 1.2 FDY98_RS24350 PF04542 Sigma-70 region 2 FDY98_RS24355 PF01476 LysM domain FDY98_RS24355 PF01551 Peptidase family M23 FDY98_RS24380 PF02542 YgbB family FDY98_RS24385 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FDY98_RS24390 PF04977 Septum formation initiator FDY98_RS24400 PF00171 Aldehyde dehydrogenase family FDY98_RS24405 PF01380 SIS domain FDY98_RS24405 PF01418 Helix-turn-helix domain, rpiR family FDY98_RS24415 PF01037 Lrp/AsnC ligand binding domain FDY98_RS24420 PF00682 HMGL-like FDY98_RS24420 PF08502 LeuA allosteric (dimerisation) domain FDY98_RS24430 PF00582 Universal stress protein family FDY98_RS24435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FDY98_RS24440 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FDY98_RS24450 PF00582 Universal stress protein family FDY98_RS24465 PF00180 Isocitrate/isopropylmalate dehydrogenase FDY98_RS24470 PF00403 Heavy-metal-associated domain FDY98_RS24475 PF13411 MerR HTH family regulatory protein FDY98_RS24480 PF02535 ZIP Zinc transporter FDY98_RS24485 PF08281 Sigma-70, region 4 FDY98_RS24485 PF04542 Sigma-70 region 2 FDY98_RS24495 PF00578 AhpC/TSA family FDY98_RS24495 PF10417 C-terminal domain of 1-Cys peroxiredoxin FDY98_RS24500 PF00571 CBS domain FDY98_RS24500 PF01595 Cyclin M transmembrane N-terminal domain FDY98_RS24510 PF02664 S-Ribosylhomocysteinase (LuxS) FDY98_RS24525 PF00202 Aminotransferase class-III FDY98_RS24530 PF00171 Aldehyde dehydrogenase family FDY98_RS24535 PF01037 Lrp/AsnC ligand binding domain FDY98_RS24540 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FDY98_RS24550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FDY98_RS24560 PF03956 Lysine exporter LysO FDY98_RS24575 PF17763 Glutaminase/Asparaginase C-terminal domain FDY98_RS24575 PF00710 Asparaginase, N-terminal FDY98_RS24580 PF01235 Sodium:alanine symporter family FDY98_RS24590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS24590 PF03466 LysR substrate binding domain FDY98_RS24595 PF18381 YcaO cyclodehydratase C-terminal domain FDY98_RS24595 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding FDY98_RS24600 PF00440 Bacterial regulatory proteins, tetR family FDY98_RS24645 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS24645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS24645 PF00672 HAMP domain FDY98_RS24650 PF00072 Response regulator receiver domain FDY98_RS24650 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS24655 PF00072 Response regulator receiver domain FDY98_RS24655 PF00486 Transcriptional regulatory protein, C terminal FDY98_RS24660 PF00672 HAMP domain FDY98_RS24660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS24660 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS24670 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS24710 PF00107 Zinc-binding dehydrogenase FDY98_RS24710 PF08240 Alcohol dehydrogenase GroES-like domain FDY98_RS24715 PF00171 Aldehyde dehydrogenase family FDY98_RS24720 PF00072 Response regulator receiver domain FDY98_RS24720 PF00196 Bacterial regulatory proteins, luxR family FDY98_RS24725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS24725 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS24725 PF00072 Response regulator receiver domain FDY98_RS24725 PF09456 RcsC Alpha-Beta-Loop (ABL) FDY98_RS24735 PF01627 Hpt domain FDY98_RS24735 PF00512 His Kinase A (phospho-acceptor) domain FDY98_RS24735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FDY98_RS24735 PF00672 HAMP domain FDY98_RS24735 PF17149 Periplasmic sensor domain found in signal transduction proteins FDY98_RS24735 PF00072 Response regulator receiver domain FDY98_RS24845 PF00892 EamA-like transporter family FDY98_RS24850 PF13614 AAA domain FDY98_RS24855 PF17762 HTH domain found in ParB protein FDY98_RS24855 PF02195 ParB-like nuclease domain FDY98_RS24870 PF00589 Phage integrase family FDY98_RS24870 PF02899 Phage integrase, N-terminal SAM-like domain FDY98_RS24910 PF08401 Domain of unknown function (DUF1738) FDY98_RS24910 PF18818 Metallopeptidase superfamily domain FDY98_RS24910 PF13362 Toprim domain FDY98_RS25090 PF06834 TraU protein FDY98_RS25125 PF01751 Toprim domain FDY98_RS25125 PF01131 DNA topoisomerase FDY98_RS25130 PF01131 DNA topoisomerase FDY98_RS25130 PF01751 Toprim domain FDY98_RS25135 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain FDY98_RS25135 PF14490 Helix-hairpin-helix containing domain FDY98_RS25135 PF13538 UvrD-like helicase C-terminal domain FDY98_RS25215 PF01025 GrpE FDY98_RS25220 PF09722 Protein of unknown function (DUF2384) FDY98_RS25225 PF08808 RES domain FDY98_RS25230 PF00717 Peptidase S24-like FDY98_RS25235 PF11798 IMS family HHH motif FDY98_RS25235 PF00817 impB/mucB/samB family FDY98_RS25235 PF11799 impB/mucB/samB family C-terminal domain FDY98_RS25235 PF13438 Domain of unknown function (DUF4113) FDY98_RS25265 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDY98_RS25265 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDY98_RS25265 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS25275 PF09339 IclR helix-turn-helix domain FDY98_RS25280 PF00378 Enoyl-CoA hydratase/isomerase FDY98_RS25285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FDY98_RS25285 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FDY98_RS25285 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FDY98_RS25290 PF02515 CoA-transferase family III FDY98_RS25300 PF01012 Electron transfer flavoprotein domain FDY98_RS25300 PF00766 Electron transfer flavoprotein FAD-binding domain FDY98_RS25310 PF02803 Thiolase, C-terminal domain FDY98_RS25310 PF00108 Thiolase, N-terminal domain FDY98_RS25315 PF03401 Tripartite tricarboxylate transporter family receptor FDY98_RS25325 PF01970 Tripartite tricarboxylate transporter TctA family FDY98_RS25335 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FDY98_RS25335 PF01348 Type II intron maturase FDY98_RS25340 PF00665 Integrase core domain FDY98_RS25340 PF02796 Helix-turn-helix domain of resolvase FDY98_RS25350 PF00202 Aminotransferase class-III FDY98_RS25355 PF00171 Aldehyde dehydrogenase family FDY98_RS25360 PF07883 Cupin domain FDY98_RS25370 PF02538 Hydantoinase B/oxoprolinase FDY98_RS25375 PF01968 Hydantoinase/oxoprolinase FDY98_RS25375 PF05378 Hydantoinase/oxoprolinase N-terminal region FDY98_RS25410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDY98_RS25410 PF00005 ABC transporter FDY98_RS25415 PF00005 ABC transporter FDY98_RS25415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDY98_RS25435 PF12911 N-terminal TM domain of oligopeptide transport permease C FDY98_RS25435 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS25440 PF03466 LysR substrate binding domain FDY98_RS25440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS25450 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS25470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FDY98_RS25470 PF00005 ABC transporter FDY98_RS25480 PF00376 MerR family regulatory protein FDY98_RS25480 PF09278 MerR, DNA binding FDY98_RS25485 PF02411 MerT mercuric transport protein FDY98_RS25490 PF00403 Heavy-metal-associated domain FDY98_RS25495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FDY98_RS25495 PF07992 Pyridine nucleotide-disulphide oxidoreductase FDY98_RS25495 PF00403 Heavy-metal-associated domain FDY98_RS25595 PF03466 LysR substrate binding domain FDY98_RS25595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FDY98_RS25610 PF00528 Binding-protein-dependent transport system inner membrane component FDY98_RS25760 PF01555 DNA methylase FDY98_RS25760 PF18273 Type III R-M EcoP15I C-terminal domain FDY98_RS25840 PF04381 Putative exonuclease, RdgC