locus-tag class description D4K88_RS00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal D4K88_RS00005 IPR001957 Chromosomal replication control, initiator DnaA D4K88_RS00005 IPR020591 Chromosomal replication control, initiator DnaA-like D4K88_RS00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site D4K88_RS00005 IPR003593 AAA+ ATPase domain D4K88_RS00005 IPR038454 DnaA, N-terminal domain superfamily D4K88_RS00005 IPR010921 Trp repressor/replication initiator D4K88_RS00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00005 IPR013317 Chromosomal replication initiator protein DnaA D4K88_RS00020 IPR004808 AP endonuclease 1 D4K88_RS00020 IPR020848 AP endonuclease 1, conserved site D4K88_RS00020 IPR036691 Endonuclease/exonuclease/phosphatase superfamily D4K88_RS00020 IPR005135 Endonuclease/exonuclease/phosphatase D4K88_RS00020 IPR020847 AP endonuclease 1, binding site D4K88_RS00035 IPR014001 Helicase superfamily 1/2, ATP-binding domain D4K88_RS00035 IPR006935 Helicase/UvrB, N-terminal D4K88_RS00035 IPR001650 Helicase, C-terminal D4K88_RS00035 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00040 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00040 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS00040 IPR002941 DNA methylase N-4/N-6 D4K88_RS00040 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class D4K88_RS00040 IPR041405 Type III R-M EcoP15I, C-terminal D4K88_RS00050 IPR014883 VRR-NUC domain D4K88_RS00050 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00050 IPR006935 Helicase/UvrB, N-terminal D4K88_RS00065 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00065 IPR011639 Restriction modification methylase Eco57I D4K88_RS00065 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS00070 IPR025272 Domain of unknown function DUF4065 D4K88_RS00080 IPR015946 K homology domain-like, alpha/beta D4K88_RS00080 IPR025249 KH domain, NusA-like D4K88_RS00080 IPR009019 K homology domain superfamily, prokaryotic type D4K88_RS00080 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS00080 IPR030842 Transcription termination/antitermination protein NusA, bacterial D4K88_RS00080 IPR003029 S1 domain D4K88_RS00080 IPR013735 Transcription factor NusA, N-terminal D4K88_RS00080 IPR010213 Transcription termination factor NusA D4K88_RS00080 IPR036555 NusA, N-terminal domain superfamily D4K88_RS00080 IPR022967 RNA-binding domain, S1 D4K88_RS00085 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS00085 IPR004534 L-seryl-tRNA(Sec) selenium transferase D4K88_RS00085 IPR018319 L-seryl-tRNA selenium transferase-like D4K88_RS00085 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS00105 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY D4K88_RS00110 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site D4K88_RS00110 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain D4K88_RS00110 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG D4K88_RS00110 IPR032879 FixG, C-terminal immunoglobulin-like domain D4K88_RS00110 IPR013783 Immunoglobulin-like fold D4K88_RS00115 IPR032095 Saccharopine dehydrogenase, C-terminal D4K88_RS00115 IPR005097 Saccharopine dehydrogenase, NADP binding domain D4K88_RS00115 IPR036291 NAD(P)-binding domain superfamily D4K88_RS00120 IPR004445 Sodium/glutamate symport carrier protein GltS D4K88_RS00125 IPR024072 Dihydrofolate reductase-like domain superfamily D4K88_RS00125 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal D4K88_RS00125 IPR002125 Cytidine and deoxycytidylate deaminase domain D4K88_RS00125 IPR016193 Cytidine deaminase-like D4K88_RS00125 IPR016192 APOBEC/CMP deaminase, zinc-binding D4K88_RS00125 IPR004794 Riboflavin biosynthesis protein RibD D4K88_RS00130 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00130 IPR007848 Methyltransferase small domain D4K88_RS00130 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase D4K88_RS00130 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS00135 IPR008250 P-type ATPase, A domain superfamily D4K88_RS00135 IPR001757 P-type ATPase D4K88_RS00135 IPR023214 HAD superfamily D4K88_RS00135 IPR027256 P-type ATPase, subfamily IB D4K88_RS00135 IPR036163 Heavy metal-associated domain superfamily D4K88_RS00135 IPR006121 Heavy metal-associated domain, HMA D4K88_RS00135 IPR023298 P-type ATPase, transmembrane domain superfamily D4K88_RS00135 IPR017969 Heavy-metal-associated, conserved site D4K88_RS00135 IPR018303 P-type ATPase, phosphorylation site D4K88_RS00135 IPR036412 HAD-like superfamily D4K88_RS00135 IPR023299 P-type ATPase, cytoplasmic domain N D4K88_RS00160 IPR018171 Peptidyl-tRNA hydrolase, conserved site D4K88_RS00160 IPR001328 Peptidyl-tRNA hydrolase D4K88_RS00160 IPR036416 Peptidyl-tRNA hydrolase superfamily D4K88_RS00165 IPR037121 Ribosomal protein L25, C-terminal D4K88_RS00165 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal D4K88_RS00165 IPR020057 Ribosomal protein L25, beta domain D4K88_RS00165 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily D4K88_RS00165 IPR029751 Ribosomal protein L25 D4K88_RS00165 IPR001021 Ribosomal protein L25, long-form D4K88_RS00170 IPR001585 Transaldolase/Fructose-6-phosphate aldolase D4K88_RS00170 IPR013785 Aldolase-type TIM barrel D4K88_RS00170 IPR004732 Transaldolase type 2 D4K88_RS00170 IPR018225 Transaldolase, active site D4K88_RS00175 IPR013221 Mur ligase, central D4K88_RS00175 IPR036615 Mur ligase, C-terminal domain superfamily D4K88_RS00175 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase D4K88_RS00175 IPR004101 Mur ligase, C-terminal D4K88_RS00175 IPR036565 Mur-like, catalytic domain superfamily D4K88_RS00175 IPR018109 Folylpolyglutamate synthetase, conserved site D4K88_RS00185 IPR034904 Fe-S cluster assembly domain superfamily D4K88_RS00185 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal D4K88_RS00190 IPR001204 Phosphate transporter D4K88_RS00195 IPR005170 Transporter-associated domain D4K88_RS00195 IPR016169 FAD-binding, type PCMH, subdomain 2 D4K88_RS00195 IPR000644 CBS domain D4K88_RS00195 IPR036318 FAD-binding, type PCMH-like superfamily D4K88_RS00195 IPR002550 CNNM, transmembrane domain D4K88_RS00205 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain D4K88_RS00220 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS00220 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal D4K88_RS00220 IPR023582 Impact family D4K88_RS00220 IPR001498 Impact, N-terminal D4K88_RS00220 IPR015796 Impact family, bacterial/archaeal D4K88_RS00220 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site D4K88_RS00220 IPR036956 Impact, N-terminal domain superfamily D4K88_RS00220 IPR035647 EF-G domain III/V-like D4K88_RS00225 IPR005265 Protoporphyrinogen oxidase HemJ-like D4K88_RS00230 IPR023576 UbiE/COQ5 methyltransferase, conserved site D4K88_RS00230 IPR004033 UbiE/COQ5 methyltransferase D4K88_RS00230 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00235 IPR003761 Exonuclease VII, small subunit D4K88_RS00235 IPR037004 Exonuclease VII, small subunit superfamily D4K88_RS00245 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm D4K88_RS00245 IPR006195 Aminoacyl-tRNA synthetase, class II D4K88_RS00245 IPR033729 Serine-tRNA ligase catalytic core domain D4K88_RS00245 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily D4K88_RS00245 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) D4K88_RS00245 IPR002317 Serine-tRNA ligase, type1 D4K88_RS00245 IPR015866 Serine-tRNA synthetase, type1, N-terminal D4K88_RS00255 IPR014016 UvrD-like helicase, ATP-binding domain D4K88_RS00255 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00255 IPR013986 DExx box DNA helicase domain superfamily D4K88_RS00255 IPR014017 UvrD-like DNA helicase, C-terminal D4K88_RS00255 IPR005751 ATP-dependent DNA helicase PcrA D4K88_RS00255 IPR034739 UvrD/AddA helicase, N-terminal D4K88_RS00255 IPR000212 DNA helicase, UvrD/REP type D4K88_RS00265 IPR004507 Flavin prenyltransferase UbiX-like D4K88_RS00265 IPR003382 Flavoprotein D4K88_RS00265 IPR036551 Flavin prenyltransferase-like D4K88_RS00270 IPR004821 Cytidyltransferase-like domain D4K88_RS00270 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS00270 IPR001980 Phosphopantetheine adenylyltransferase D4K88_RS00275 IPR018094 Thymidylate kinase D4K88_RS00275 IPR018095 Thymidylate kinase, conserved site D4K88_RS00275 IPR039430 Thymidylate kinase-like domain D4K88_RS00275 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00285 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS00285 IPR003356 DNA methylase, adenine-specific D4K88_RS00285 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00295 IPR018320 DNA polymerase 1 D4K88_RS00295 IPR002298 DNA polymerase A D4K88_RS00295 IPR008918 Helix-hairpin-helix motif, class 2 D4K88_RS00295 IPR029060 PIN-like domain superfamily D4K88_RS00295 IPR019760 DNA-directed DNA polymerase, family A, conserved site D4K88_RS00295 IPR036279 5'-3' exonuclease, C-terminal domain superfamily D4K88_RS00295 IPR012337 Ribonuclease H-like superfamily D4K88_RS00295 IPR001098 DNA-directed DNA polymerase, family A, palm domain D4K88_RS00295 IPR036397 Ribonuclease H superfamily D4K88_RS00295 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal D4K88_RS00295 IPR002421 5'-3' exonuclease, N-terminal D4K88_RS00295 IPR002562 3'-5' exonuclease domain D4K88_RS00295 IPR020045 DNA polymerase I-like, H3TH domain D4K88_RS00305 IPR033939 Branched-chain aminotransferase D4K88_RS00305 IPR018300 Aminotransferase, class IV, conserved site D4K88_RS00305 IPR001544 Aminotransferase class IV D4K88_RS00305 IPR036038 Aminotransferase-like, PLP-dependent enzymes D4K88_RS00305 IPR005786 Branched-chain amino acid aminotransferase II D4K88_RS00315 IPR003453 ABC transport permease subunit MlaE, Proteobacteria D4K88_RS00315 IPR030802 ABC transporter permease MalE D4K88_RS00320 IPR018449 NIL domain D4K88_RS00320 IPR026253 Methionine import ATP-binding protein MetN D4K88_RS00320 IPR003439 ABC transporter-like D4K88_RS00320 IPR017871 ABC transporter, conserved site D4K88_RS00320 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal D4K88_RS00320 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain D4K88_RS00320 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00320 IPR003593 AAA+ ATPase domain D4K88_RS00340 IPR009056 Cytochrome c-like domain D4K88_RS00340 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase D4K88_RS00340 IPR004852 Di-haem cytochrome c peroxidase D4K88_RS00340 IPR036909 Cytochrome c-like domain superfamily D4K88_RS00345 IPR004805 DNA polymerase III, alpha subunit D4K88_RS00345 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain D4K88_RS00345 IPR003141 Polymerase/histidinol phosphatase, N-terminal D4K88_RS00345 IPR004013 PHP domain D4K88_RS00345 IPR029460 DNA polymerase, helix-hairpin-helix motif D4K88_RS00345 IPR016195 Polymerase/histidinol phosphatase-like D4K88_RS00345 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain D4K88_RS00345 IPR040982 DNA polymerase III alpha subunit finger domain D4K88_RS00350 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F D4K88_RS00350 IPR006145 Pseudouridine synthase, RsuA/RluA D4K88_RS00350 IPR020103 Pseudouridine synthase, catalytic domain superfamily D4K88_RS00350 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain D4K88_RS00350 IPR002942 RNA-binding S4 domain D4K88_RS00350 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site D4K88_RS00350 IPR036986 RNA-binding S4 domain superfamily D4K88_RS00355 IPR017937 Thioredoxin, conserved site D4K88_RS00355 IPR005746 Thioredoxin D4K88_RS00355 IPR036249 Thioredoxin-like superfamily D4K88_RS00355 IPR013766 Thioredoxin domain D4K88_RS00365 IPR024952 Lipoprotein LPP20-like D4K88_RS00365 IPR002217 Lipoprotein LPP20 D4K88_RS00390 IPR025867 MnmE, helical domain D4K88_RS00390 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 D4K88_RS00390 IPR005225 Small GTP-binding protein domain D4K88_RS00390 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00390 IPR027368 tRNA modification GTPase MnmE domain 2 D4K88_RS00390 IPR006073 GTP binding domain D4K88_RS00390 IPR018948 GTP-binding protein TrmE, N-terminal D4K88_RS00390 IPR031168 TrmE-type guanine nucleotide-binding domain D4K88_RS00390 IPR004520 tRNA modification GTPase MnmE D4K88_RS00400 IPR019998 Membrane insertase YidC D4K88_RS00400 IPR038210 Membrane insertase YidC, periplasmic domain D4K88_RS00400 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 D4K88_RS00400 IPR028053 Membrane insertase YidC, N-terminal D4K88_RS00400 IPR028055 Membrane insertase YidC/Oxa1, C-terminal D4K88_RS00405 IPR002696 Putative membrane protein insertion efficiency factor D4K88_RS00410 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS00410 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS00410 IPR020539 Ribonuclease P, conserved site D4K88_RS00410 IPR000100 Ribonuclease P D4K88_RS00415 IPR000271 Ribosomal protein L34 D4K88_RS00415 IPR020939 Ribosomal protein L34, conserved site D4K88_RS00420 IPR003400 Biopolymer transport protein ExbD/TolR D4K88_RS00425 IPR002898 MotA/TolQ/ExbB proton channel D4K88_RS00425 IPR014172 TonB-system energizer ExbB type-2 D4K88_RS00430 IPR023620 Small protein B D4K88_RS00430 IPR020081 SsrA-binding protein, conserved site D4K88_RS00430 IPR000037 SsrA-binding protein D4K88_RS00435 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase D4K88_RS00435 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS00435 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS00435 IPR006204 GHMP kinase N-terminal domain D4K88_RS00435 IPR036554 GHMP kinase, C-terminal domain superfamily D4K88_RS00440 IPR003751 Translational regulator CsrA D4K88_RS00440 IPR036107 Carbon storage regulator superfamily D4K88_RS00445 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase D4K88_RS00445 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site D4K88_RS00445 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain D4K88_RS00445 IPR029000 Cyclophilin-like domain superfamily D4K88_RS00495 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain D4K88_RS00495 IPR002912 ACT domain D4K88_RS00495 IPR004810 Formyltetrahydrofolate deformylase D4K88_RS00495 IPR002376 Formyl transferase, N-terminal D4K88_RS00495 IPR036477 Formyl transferase, N-terminal domain superfamily D4K88_RS00515 IPR011530 Ribosomal RNA adenine dimethylase D4K88_RS00515 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm D4K88_RS00515 IPR023165 rRNA adenine dimethylase-like D4K88_RS00515 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site D4K88_RS00515 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal D4K88_RS00515 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00520 IPR001279 Metallo-beta-lactamase D4K88_RS00520 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like D4K88_RS00520 IPR004613 Ribonuclease J D4K88_RS00520 IPR042173 Ribonuclease J, domain 2 D4K88_RS00520 IPR030854 Ribonuclease J, bacteria D4K88_RS00520 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain D4K88_RS00520 IPR001587 Ribonuclease J, conserved site D4K88_RS00520 IPR041636 Ribonuclease J, C-terminal D4K88_RS00525 IPR000644 CBS domain D4K88_RS00525 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type D4K88_RS00525 IPR001347 Sugar isomerase (SIS) D4K88_RS00525 IPR035474 KpsF-like, SIS domain D4K88_RS00530 IPR007197 Radical SAM D4K88_RS00530 IPR013785 Aldolase-type TIM barrel D4K88_RS00530 IPR040072 Methyltransferase (Class A) D4K88_RS00530 IPR027492 Dual-specificity RNA methyltransferase RlmN D4K88_RS00530 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr D4K88_RS00550 IPR025490 RNA-binding protein, HP1423 type D4K88_RS00550 IPR002942 RNA-binding S4 domain D4K88_RS00550 IPR036986 RNA-binding S4 domain superfamily D4K88_RS00555 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain D4K88_RS00555 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site D4K88_RS00555 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding D4K88_RS00555 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS00555 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding D4K88_RS00555 IPR023585 Isoleucine-tRNA ligase, type 1 D4K88_RS00555 IPR002301 Isoleucine-tRNA ligase D4K88_RS00555 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain D4K88_RS00555 IPR002300 Aminoacyl-tRNA synthetase, class Ia D4K88_RS00560 IPR001482 Type II/IV secretion system protein D4K88_RS00560 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00560 IPR014149 Conjugative transfer, TrbB D4K88_RS00565 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site D4K88_RS00565 IPR040627 T3SS EscN ATPase, C-terminal D4K88_RS00565 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00565 IPR005714 ATPase, type III secretion system, FliI/YscN D4K88_RS00565 IPR032463 ATPase, type III secretion system, FliI D4K88_RS00565 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain D4K88_RS00565 IPR003593 AAA+ ATPase domain D4K88_RS00570 IPR002191 Bacterial export protein family 3 D4K88_RS00570 IPR006305 Flagellar biosynthesis protein FliQ D4K88_RS00575 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase D4K88_RS00575 IPR016169 FAD-binding, type PCMH, subdomain 2 D4K88_RS00575 IPR036318 FAD-binding, type PCMH-like superfamily D4K88_RS00575 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily D4K88_RS00575 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal D4K88_RS00580 IPR017850 Alkaline-phosphatase-like, core domain superfamily D4K88_RS00580 IPR012549 Phosphoethanolamine transferase, N-terminal D4K88_RS00580 IPR040423 Phosphoethanolamine transferase D4K88_RS00580 IPR000917 Sulfatase, N-terminal D4K88_RS00590 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00590 IPR039657 Dimethylallyltransferase D4K88_RS00590 IPR018022 IPP transferase D4K88_RS00595 IPR004394 Protein Iojap/ribosomal silencing factor RsfS D4K88_RS00600 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF D4K88_RS00600 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 D4K88_RS00640 IPR023679 Uncharacterised protein family UPF0761, bacterial D4K88_RS00640 IPR017039 Virulence factor BrkB D4K88_RS00645 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB D4K88_RS00645 IPR024177 Biotin synthase D4K88_RS00645 IPR006638 Elp3/MiaB/NifB D4K88_RS00645 IPR013785 Aldolase-type TIM barrel D4K88_RS00645 IPR010722 Biotin and thiamin synthesis-associated domain D4K88_RS00645 IPR007197 Radical SAM D4K88_RS00675 IPR005923 Formiminoglutamase D4K88_RS00675 IPR023696 Ureohydrolase domain superfamily D4K88_RS00675 IPR020855 Ureohydrolase, manganese-binding site D4K88_RS00675 IPR006035 Ureohydrolase D4K88_RS00680 IPR036291 NAD(P)-binding domain superfamily D4K88_RS00680 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 D4K88_RS00680 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal D4K88_RS00680 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 D4K88_RS00680 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain D4K88_RS00680 IPR008141 Alanine dehydrogenase D4K88_RS00695 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily D4K88_RS00695 IPR002504 NAD kinase D4K88_RS00695 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal D4K88_RS00695 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal D4K88_RS00700 IPR003395 RecF/RecN/SMC, N-terminal D4K88_RS00700 IPR003593 AAA+ ATPase domain D4K88_RS00700 IPR004604 DNA recombination/repair protein RecN D4K88_RS00700 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00735 IPR029460 DNA polymerase, helix-hairpin-helix motif D4K88_RS00735 IPR028112 DNA polymerase III polC-type, N-terminal domain I D4K88_RS00735 IPR024754 DNA polymerase III polC-like, N-terminal domain II D4K88_RS00735 IPR040982 DNA polymerase III alpha subunit finger domain D4K88_RS00735 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain D4K88_RS00735 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain D4K88_RS00735 IPR012337 Ribonuclease H-like superfamily D4K88_RS00735 IPR013520 Exonuclease, RNase T/DNA polymerase III D4K88_RS00735 IPR003141 Polymerase/histidinol phosphatase, N-terminal D4K88_RS00735 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type D4K88_RS00735 IPR036397 Ribonuclease H superfamily D4K88_RS00735 IPR004013 PHP domain D4K88_RS00740 IPR013785 Aldolase-type TIM barrel D4K88_RS00740 IPR011060 Ribulose-phosphate binding barrel D4K88_RS00740 IPR026019 Ribulose-phosphate 3-epimerase D4K88_RS00740 IPR000056 Ribulose-phosphate 3-epimerase-like D4K88_RS00745 IPR028343 Fructose-1,6-bisphosphatase D4K88_RS00745 IPR023079 Sedoheptulose-1,7-bisphosphatase D4K88_RS00745 IPR000146 Fructose-1,6-bisphosphatase class 1 D4K88_RS00745 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal D4K88_RS00765 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily D4K88_RS00765 IPR002912 ACT domain D4K88_RS00765 IPR036291 NAD(P)-binding domain superfamily D4K88_RS00765 IPR003099 Prephenate dehydrogenase D4K88_RS00770 IPR027543 Lon protease, bacterial D4K88_RS00770 IPR003959 ATPase, AAA-type, core D4K88_RS00770 IPR027065 Lon protease D4K88_RS00770 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00770 IPR008268 Peptidase S16, active site D4K88_RS00770 IPR015947 PUA-like superfamily D4K88_RS00770 IPR003593 AAA+ ATPase domain D4K88_RS00770 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS00770 IPR008269 Peptidase S16, Lon proteolytic domain D4K88_RS00770 IPR004815 Lon protease, bacterial/eukaryotic-type D4K88_RS00770 IPR003111 Lon, substrate-binding domain D4K88_RS00770 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS00775 IPR011990 Tetratricopeptide-like helical domain superfamily D4K88_RS00775 IPR017689 Outer membrane protein assembly factor BamD D4K88_RS00775 IPR039565 Outer membrane lipoprotein BamD-like D4K88_RS00780 IPR003775 Flagellar assembly factor FliW D4K88_RS00780 IPR024046 Flagellar assembly factor FliW domain superfamily D4K88_RS00790 IPR029069 HotDog domain superfamily D4K88_RS00790 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ D4K88_RS00790 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ D4K88_RS00795 IPR001451 Hexapeptide repeat D4K88_RS00795 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase D4K88_RS00795 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily D4K88_RS00795 IPR011004 Trimeric LpxA-like superfamily D4K88_RS00795 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal D4K88_RS00800 IPR010603 Zinc finger, ClpX C4-type D4K88_RS00800 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00800 IPR003593 AAA+ ATPase domain D4K88_RS00800 IPR003959 ATPase, AAA-type, core D4K88_RS00800 IPR019489 Clp ATPase, C-terminal D4K88_RS00800 IPR004487 Clp protease, ATP-binding subunit ClpX D4K88_RS00805 IPR004753 Cell shape determining protein MreB D4K88_RS00820 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class D4K88_RS00820 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00820 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS00820 IPR002941 DNA methylase N-4/N-6 D4K88_RS00820 IPR001091 Restriction/modification DNA-methylase D4K88_RS00825 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS00825 IPR040843 Restriction enzyme adenine methylase associated D4K88_RS00825 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00825 IPR001091 Restriction/modification DNA-methylase D4K88_RS00825 IPR002941 DNA methylase N-4/N-6 D4K88_RS00830 IPR002941 DNA methylase N-4/N-6 D4K88_RS00830 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00830 IPR001091 Restriction/modification DNA-methylase D4K88_RS00830 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS00840 IPR011006 CheY-like superfamily D4K88_RS00840 IPR001867 OmpR/PhoB-type DNA-binding domain D4K88_RS00840 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS00840 IPR039420 Transcriptional regulatory protein WalR-like D4K88_RS00840 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS00840 IPR016032 Signal transduction response regulator, C-terminal effector D4K88_RS00845 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily D4K88_RS00845 IPR036890 Histidine kinase/HSP90-like ATPase superfamily D4K88_RS00845 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain D4K88_RS00845 IPR003594 Histidine kinase/HSP90-like ATPase D4K88_RS00845 IPR005467 Histidine kinase domain D4K88_RS00850 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase D4K88_RS00850 IPR029056 Ribokinase-like D4K88_RS00850 IPR004443 YjeF N-terminal domain D4K88_RS00850 IPR036652 YjeF N-terminal domain superfamily D4K88_RS00850 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr D4K88_RS00850 IPR017953 Carbohydrate kinase, predicted, conserved site D4K88_RS00855 IPR007694 DNA helicase, DnaB-like, C-terminal D4K88_RS00855 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily D4K88_RS00855 IPR007692 DNA helicase, DnaB type D4K88_RS00855 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS00855 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal D4K88_RS00855 IPR007693 DNA helicase, DnaB-like, N-terminal D4K88_RS00865 IPR006369 Protohaem IX farnesyltransferase D4K88_RS00865 IPR000537 UbiA prenyltransferase family D4K88_RS00865 IPR030470 UbiA prenyltransferase conserved site D4K88_RS00880 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 D4K88_RS00880 IPR033177 Phosphatidylserine decarboxylase D4K88_RS00880 IPR003817 Phosphatidylserine decarboxylase-related D4K88_RS00885 IPR003473 Quinolinate synthetase A D4K88_RS00885 IPR036094 Quinolinate synthetase A superfamily D4K88_RS00885 IPR023515 Quinolinate synthase A, type 3 D4K88_RS00890 IPR013785 Aldolase-type TIM barrel D4K88_RS00890 IPR004393 Nicotinate-nucleotide pyrophosphorylase D4K88_RS00890 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD D4K88_RS00890 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal D4K88_RS00890 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily D4K88_RS00890 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal D4K88_RS00890 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal D4K88_RS00900 IPR040843 Restriction enzyme adenine methylase associated D4K88_RS00900 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS00900 IPR002941 DNA methylase N-4/N-6 D4K88_RS00900 IPR001091 Restriction/modification DNA-methylase D4K88_RS00900 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS00910 IPR001478 PDZ domain D4K88_RS00910 IPR036034 PDZ superfamily D4K88_RS00910 IPR005151 Tail specific protease D4K88_RS00910 IPR029045 ClpP/crotonase-like domain superfamily D4K88_RS00910 IPR004447 C-terminal-processing peptidase S41A D4K88_RS00920 IPR002123 Phospholipid/glycerol acyltransferase D4K88_RS00920 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase D4K88_RS00925 IPR005122 Uracil-DNA glycosylase-like D4K88_RS00925 IPR018085 Uracil-DNA glycosylase, active site D4K88_RS00925 IPR036895 Uracil-DNA glycosylase-like domain superfamily D4K88_RS00925 IPR002043 Uracil-DNA glycosylase family 1 D4K88_RS00935 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site D4K88_RS00935 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain D4K88_RS00935 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family D4K88_RS00935 IPR036291 NAD(P)-binding domain superfamily D4K88_RS00935 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I D4K88_RS00935 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain D4K88_RS00940 IPR015911 Phosphoglycerate kinase, conserved site D4K88_RS00940 IPR001576 Phosphoglycerate kinase D4K88_RS00940 IPR015824 Phosphoglycerate kinase, N-terminal D4K88_RS00940 IPR036043 Phosphoglycerate kinase superfamily D4K88_RS00945 IPR004488 Magnesium/cobalt transport protein CorA D4K88_RS00945 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB D4K88_RS00950 IPR005496 Integral membrane protein TerC D4K88_RS00960 IPR037682 TonB, C-terminal D4K88_RS00960 IPR006260 TonB/TolA, C-terminal D4K88_RS00960 IPR003538 Gram-negative bacterial TonB protein D4K88_RS00965 IPR014171 TonB system transport protein ExbD type-2 D4K88_RS00965 IPR003400 Biopolymer transport protein ExbD/TolR D4K88_RS00970 IPR014172 TonB-system energizer ExbB type-2 D4K88_RS00970 IPR002898 MotA/TolQ/ExbB proton channel D4K88_RS00975 IPR002145 Ribbon-helix-helix protein, CopG D4K88_RS00975 IPR022988 Nickel-responsive transcriptional regulator NikR D4K88_RS00975 IPR014864 Transcription factor, NikR, nickel binding C-terminal D4K88_RS00975 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal D4K88_RS00975 IPR013321 Arc-type ribbon-helix-helix D4K88_RS00975 IPR010985 Ribbon-helix-helix D4K88_RS00980 IPR004821 Cytidyltransferase-like domain D4K88_RS00980 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase D4K88_RS00980 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS00990 IPR023382 Adenine nucleotide alpha hydrolase-like domains D4K88_RS00990 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS00990 IPR004506 tRNA-specific 2-thiouridylase D4K88_RS01005 IPR012724 Chaperone DnaJ D4K88_RS01005 IPR001623 DnaJ domain D4K88_RS01005 IPR008971 HSP40/DnaJ peptide-binding D4K88_RS01005 IPR002939 Chaperone DnaJ, C-terminal D4K88_RS01005 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily D4K88_RS01005 IPR036869 Chaperone J-domain superfamily D4K88_RS01005 IPR001305 Heat shock protein DnaJ, cysteine-rich domain D4K88_RS01010 IPR011606 Branched-chain amino acid transport, permease D4K88_RS01010 IPR004471 Branched-chain amino acid transport, AzlC D4K88_RS01015 IPR008407 Branched-chain amino acid transport, AzlD D4K88_RS01020 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains D4K88_RS01020 IPR001036 Acriflavin resistance protein D4K88_RS01020 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA D4K88_RS01045 IPR005677 Fumarate hydratase, class II D4K88_RS01045 IPR024083 Fumarase/histidase, N-terminal D4K88_RS01045 IPR018951 Fumarase C, C-terminal D4K88_RS01045 IPR020557 Fumarate lyase, conserved site D4K88_RS01045 IPR000362 Fumarate lyase family D4K88_RS01045 IPR008948 L-Aspartase-like D4K88_RS01045 IPR022761 Fumarate lyase, N-terminal D4K88_RS01055 IPR024567 Ribonuclease HII/HIII domain D4K88_RS01055 IPR001352 Ribonuclease HII/HIII D4K88_RS01055 IPR022898 Ribonuclease HII D4K88_RS01055 IPR012337 Ribonuclease H-like superfamily D4K88_RS01055 IPR036397 Ribonuclease H superfamily D4K88_RS01070 IPR027486 Ribosomal protein S10 domain D4K88_RS01070 IPR001848 Ribosomal protein S10 D4K88_RS01070 IPR036838 Ribosomal protein S10 domain superfamily D4K88_RS01070 IPR018268 Ribosomal protein S10, conserved site D4K88_RS01075 IPR019927 Ribosomal protein L3, bacterial/organelle-type D4K88_RS01075 IPR009000 Translation protein, beta-barrel domain superfamily D4K88_RS01075 IPR000597 Ribosomal protein L3 D4K88_RS01080 IPR002136 Ribosomal protein L4/L1e D4K88_RS01080 IPR023574 Ribosomal protein L4 domain superfamily D4K88_RS01080 IPR013005 50S ribosomal protein uL4 D4K88_RS01085 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily D4K88_RS01085 IPR012678 Ribosomal protein L23/L15e core domain superfamily D4K88_RS01085 IPR013025 Ribosomal protein L25/L23 D4K88_RS01090 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS01090 IPR005880 Ribosomal protein L2, bacterial/organellar-type D4K88_RS01090 IPR022669 Ribosomal protein L2, C-terminal D4K88_RS01090 IPR014722 Ribosomal protein L2, domain 2 D4K88_RS01090 IPR002171 Ribosomal protein L2 D4K88_RS01090 IPR022671 Ribosomal protein L2, conserved site D4K88_RS01090 IPR014726 Ribosomal protein L2, domain 3 D4K88_RS01090 IPR008991 Translation protein SH3-like domain superfamily D4K88_RS01090 IPR022666 Ribosomal Proteins L2, RNA binding domain D4K88_RS01095 IPR023575 Ribosomal protein S19, superfamily D4K88_RS01095 IPR020934 Ribosomal protein S19 conserved site D4K88_RS01095 IPR005732 Ribosomal protein S19, bacterial-type D4K88_RS01095 IPR002222 Ribosomal protein S19/S15 D4K88_RS01100 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type D4K88_RS01100 IPR036394 Ribosomal protein L22/L17 superfamily D4K88_RS01100 IPR018260 Ribosomal protein L22/L17, conserved site D4K88_RS01100 IPR001063 Ribosomal protein L22/L17 D4K88_RS01105 IPR018280 Ribosomal protein S3, conserved site D4K88_RS01105 IPR004087 K Homology domain D4K88_RS01105 IPR015946 K homology domain-like, alpha/beta D4K88_RS01105 IPR036419 Ribosomal protein S3, C-terminal domain superfamily D4K88_RS01105 IPR009019 K homology domain superfamily, prokaryotic type D4K88_RS01105 IPR001351 Ribosomal protein S3, C-terminal D4K88_RS01105 IPR005704 Ribosomal protein S3, bacterial-type D4K88_RS01105 IPR004044 K Homology domain, type 2 D4K88_RS01110 IPR016180 Ribosomal protein L10e/L16 D4K88_RS01110 IPR036920 Ribosomal protein L10e/L16 superfamily D4K88_RS01110 IPR000114 Ribosomal protein L16 D4K88_RS01110 IPR020798 Ribosomal protein L16, conserved site D4K88_RS01115 IPR018254 Ribosomal protein L29, conserved site D4K88_RS01115 IPR036049 Ribosomal protein L29/L35 superfamily D4K88_RS01115 IPR001854 Ribosomal protein L29/L35 D4K88_RS01120 IPR019979 Ribosomal protein S17, conserved site D4K88_RS01120 IPR000266 Ribosomal protein S17/S11 D4K88_RS01120 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS01120 IPR019984 30S ribosomal protein S17 D4K88_RS01125 IPR036853 Ribosomal protein L14 superfamily D4K88_RS01125 IPR000218 Ribosomal protein L14P D4K88_RS01125 IPR005745 Ribosomal protein L14P, bacterial-type D4K88_RS01125 IPR019972 Ribosomal protein L14P, conserved site D4K88_RS01130 IPR008991 Translation protein SH3-like domain superfamily D4K88_RS01130 IPR005825 Ribosomal protein L24/L26, conserved site D4K88_RS01130 IPR003256 Ribosomal protein L24 D4K88_RS01130 IPR041988 Ribosomal Protein L26/L24, KOW domain D4K88_RS01130 IPR005824 KOW D4K88_RS01135 IPR020930 Ribosomal protein L5, bacterial-type D4K88_RS01135 IPR031309 Ribosomal protein L5, C-terminal D4K88_RS01135 IPR022803 Ribosomal protein L5 domain superfamily D4K88_RS01135 IPR020929 Ribosomal protein L5, conserved site D4K88_RS01135 IPR002132 Ribosomal protein L5 D4K88_RS01135 IPR031310 Ribosomal protein L5, N-terminal D4K88_RS01140 IPR023053 Ribosomal protein S14, type Z D4K88_RS01140 IPR018271 Ribosomal protein S14, conserved site D4K88_RS01140 IPR001209 Ribosomal protein S14 D4K88_RS01145 IPR035987 Ribosomal protein S8 superfamily D4K88_RS01145 IPR000630 Ribosomal protein S8 D4K88_RS01150 IPR000702 Ribosomal protein L6 D4K88_RS01150 IPR002358 Ribosomal protein L6, conserved site D4K88_RS01150 IPR020040 Ribosomal protein L6, alpha-beta domain D4K88_RS01150 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily D4K88_RS01150 IPR019906 Ribosomal protein L6, bacterial-type D4K88_RS01155 IPR005484 Ribosomal protein L18 D4K88_RS01155 IPR004389 Ribosomal protein L18, bacterial-type D4K88_RS01160 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS01160 IPR018192 Ribosomal protein S5, N-terminal, conserved site D4K88_RS01160 IPR005324 Ribosomal protein S5, C-terminal D4K88_RS01160 IPR005712 Ribosomal protein S5, bacterial-type D4K88_RS01160 IPR000851 Ribosomal protein S5 D4K88_RS01160 IPR013810 Ribosomal protein S5, N-terminal D4K88_RS01160 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS01165 IPR030878 Ribosomal protein L15 D4K88_RS01165 IPR005749 Ribosomal protein L15, bacterial-type D4K88_RS01165 IPR036227 Ribosomal L18e/L15P superfamily D4K88_RS01165 IPR021131 Ribosomal protein L18e/L15P D4K88_RS01170 IPR023201 SecY domain superfamily D4K88_RS01170 IPR030659 SecY conserved site D4K88_RS01170 IPR002208 SecY/SEC61-alpha family D4K88_RS01170 IPR026593 Protein translocase subunit SecY D4K88_RS01175 IPR036005 Creatinase/aminopeptidase-like D4K88_RS01175 IPR000994 Peptidase M24 D4K88_RS01175 IPR001714 Peptidase M24, methionine aminopeptidase D4K88_RS01175 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 D4K88_RS01180 IPR006196 RNA-binding domain, S1, IF1 type D4K88_RS01180 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS01180 IPR004368 Translation initiation factor IF-1 D4K88_RS01180 IPR022967 RNA-binding domain, S1 D4K88_RS01185 IPR035977 Ribosomal protein L36 superfamily D4K88_RS01185 IPR000473 Ribosomal protein L36 D4K88_RS01190 IPR010979 Ribosomal protein S13-like, H2TH D4K88_RS01190 IPR019980 Ribosomal protein S13, bacterial-type D4K88_RS01190 IPR001892 Ribosomal protein S13 D4K88_RS01190 IPR018269 Ribosomal protein S13, conserved site D4K88_RS01190 IPR027437 30s ribosomal protein S13, C-terminal D4K88_RS01195 IPR019981 Ribosomal protein S11, bacterial-type D4K88_RS01195 IPR018102 Ribosomal S11, conserved site D4K88_RS01195 IPR036967 Ribosomal protein S11 superfamily D4K88_RS01195 IPR001971 Ribosomal protein S11 D4K88_RS01200 IPR022801 Ribosomal protein S4/S9 D4K88_RS01200 IPR001912 Ribosomal protein S4/S9, N-terminal D4K88_RS01200 IPR018079 Ribosomal protein S4, conserved site D4K88_RS01200 IPR002942 RNA-binding S4 domain D4K88_RS01200 IPR036986 RNA-binding S4 domain superfamily D4K88_RS01200 IPR005709 Ribosomal protein S4, bacterial-type D4K88_RS01205 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type D4K88_RS01205 IPR036643 DNA-directed RNA polymerase, insert domain superfamily D4K88_RS01205 IPR011262 DNA-directed RNA polymerase, insert domain D4K88_RS01205 IPR036603 RNA polymerase, RBP11-like subunit D4K88_RS01205 IPR011260 RNA polymerase, alpha subunit, C-terminal D4K88_RS01205 IPR011773 DNA-directed RNA polymerase, alpha subunit D4K88_RS01210 IPR036373 Ribosomal protein L17 superfamily D4K88_RS01210 IPR000456 Ribosomal protein L17 D4K88_RS01240 IPR004305 Thiaminase-2/PQQC D4K88_RS01240 IPR027574 Thiaminase II D4K88_RS01240 IPR016084 Haem oxygenase-like, multi-helical D4K88_RS01245 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily D4K88_RS01245 IPR007372 Lipid/polyisoprenoid-binding, YceI-like D4K88_RS01245 IPR023480 Uncharacterised protein family UPF0312/YceI D4K88_RS01255 IPR002201 Glycosyl transferase, family 9 D4K88_RS01275 IPR023095 Adenine-specific methyltransferase, domain 2 D4K88_RS01275 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS01275 IPR012263 Adenine modification methylase, M.EcoRV-type D4K88_RS01275 IPR012327 D12 class N6 adenine-specific DNA methyltransferase D4K88_RS01275 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS01290 IPR015890 Chorismate-utilising enzyme, C-terminal D4K88_RS01290 IPR006805 Anthranilate synthase component I, N-terminal D4K88_RS01290 IPR019999 Anthranilate synthase component I-like D4K88_RS01290 IPR005801 ADC synthase D4K88_RS01290 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial D4K88_RS01295 IPR017926 Glutamine amidotransferase D4K88_RS01295 IPR029062 Class I glutamine amidotransferase-like D4K88_RS01295 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain D4K88_RS01300 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily D4K88_RS01300 IPR005940 Anthranilate phosphoribosyl transferase D4K88_RS01300 IPR000312 Glycosyl transferase, family 3 D4K88_RS01300 IPR017459 Glycosyl transferase family 3, N-terminal domain D4K88_RS01300 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily D4K88_RS01305 IPR013798 Indole-3-glycerol phosphate synthase D4K88_RS01305 IPR001468 Indole-3-glycerol phosphate synthase, conserved site D4K88_RS01305 IPR013785 Aldolase-type TIM barrel D4K88_RS01305 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) D4K88_RS01305 IPR011060 Ribulose-phosphate binding barrel D4K88_RS01310 IPR001926 Pyridoxal-phosphate dependent enzyme D4K88_RS01310 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme D4K88_RS01310 IPR023026 Tryptophan synthase beta chain/beta chain-like D4K88_RS01310 IPR006654 Tryptophan synthase, beta chain D4K88_RS01310 IPR006653 Tryptophan synthase, beta chain, conserved site D4K88_RS01315 IPR002028 Tryptophan synthase, alpha chain D4K88_RS01315 IPR018204 Tryptophan synthase, alpha chain, active site D4K88_RS01315 IPR011060 Ribulose-phosphate binding barrel D4K88_RS01315 IPR013785 Aldolase-type TIM barrel D4K88_RS01325 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II D4K88_RS01325 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III D4K88_RS01325 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I D4K88_RS01325 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III D4K88_RS01325 IPR005841 Alpha-D-phosphohexomutase superfamily D4K88_RS01325 IPR016066 Alpha-D-phosphohexomutase, conserved site D4K88_RS01325 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily D4K88_RS01325 IPR005843 Alpha-D-phosphohexomutase, C-terminal D4K88_RS01335 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit D4K88_RS01335 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 D4K88_RS01340 IPR010227 NADH-quinone oxidoreductase, chain M/4 D4K88_RS01340 IPR003918 NADH:ubiquinone oxidoreductase D4K88_RS01340 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal D4K88_RS01340 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit D4K88_RS01345 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit D4K88_RS01345 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 D4K88_RS01345 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup D4K88_RS01345 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal D4K88_RS01350 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like D4K88_RS01350 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K D4K88_RS01355 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ D4K88_RS01355 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 D4K88_RS01360 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site D4K88_RS01360 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain D4K88_RS01360 IPR010226 NADH-quinone oxidoreductase, chain I D4K88_RS01365 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site D4K88_RS01365 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H D4K88_RS01370 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding D4K88_RS01370 IPR010228 NADH:ubiquinone oxidoreductase, subunit G D4K88_RS01370 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site D4K88_RS01370 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain D4K88_RS01370 IPR009010 Aspartate decarboxylase-like domain superfamily D4K88_RS01370 IPR006657 Molybdopterin dinucleotide-binding domain D4K88_RS01370 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain D4K88_RS01370 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain D4K88_RS01370 IPR036010 2Fe-2S ferredoxin-like superfamily D4K88_RS01370 IPR006656 Molybdopterin oxidoreductase D4K88_RS01370 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site D4K88_RS01370 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site D4K88_RS01385 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily D4K88_RS01385 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H D4K88_RS01385 IPR029014 [NiFe]-hydrogenase, large subunit D4K88_RS01385 IPR001135 NADH-quinone oxidoreductase, subunit D D4K88_RS01390 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily D4K88_RS01390 IPR010218 NADH dehydrogenase, subunit C D4K88_RS01390 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit D4K88_RS01390 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site D4K88_RS01395 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit D4K88_RS01395 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit D4K88_RS01400 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily D4K88_RS01400 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 D4K88_RS01400 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid D4K88_RS01405 IPR026590 Sirtuin family, catalytic core domain D4K88_RS01405 IPR027546 Sirtuin, class III D4K88_RS01405 IPR003000 Sirtuin family D4K88_RS01405 IPR026591 Sirtuin, catalytic core small domain superfamily D4K88_RS01405 IPR029035 DHS-like NAD/FAD-binding domain superfamily D4K88_RS01415 IPR000836 Phosphoribosyltransferase domain D4K88_RS01415 IPR006273 Orotate phosphoribosyltransferase, bacterial D4K88_RS01415 IPR023031 Orotate phosphoribosyltransferase D4K88_RS01415 IPR029057 Phosphoribosyltransferase-like D4K88_RS01420 IPR002661 Ribosome recycling factor D4K88_RS01420 IPR036191 RRF superfamily D4K88_RS01420 IPR023584 Ribosome recycling factor domain D4K88_RS01425 IPR004692 Preprotein translocase SecG subunit D4K88_RS01435 IPR024109 Tryptophan-tRNA ligase, bacterial-type D4K88_RS01435 IPR002305 Aminoacyl-tRNA synthetase, class Ic D4K88_RS01435 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS01435 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site D4K88_RS01435 IPR002306 Tryptophan-tRNA ligase D4K88_RS01440 IPR039424 Solute-binding protein family 5 D4K88_RS01440 IPR000914 Solute-binding protein family 5 domain D4K88_RS01440 IPR030678 Peptide/nickel binding protein, MppA-type D4K88_RS01445 IPR035906 MetI-like superfamily D4K88_RS01445 IPR000515 ABC transporter type 1, transmembrane domain MetI-like D4K88_RS01455 IPR036291 NAD(P)-binding domain superfamily D4K88_RS01455 IPR022893 Shikimate dehydrogenase family D4K88_RS01455 IPR011342 Shikimate dehydrogenase D4K88_RS01455 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal D4K88_RS01460 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS01460 IPR022966 Ribonuclease II/R, conserved site D4K88_RS01460 IPR011805 Ribonuclease R D4K88_RS01460 IPR001900 Ribonuclease II/R D4K88_RS01465 IPR010372 DNA polymerase III delta, N-terminal D4K88_RS01465 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS01470 IPR000529 Ribosomal protein S6 D4K88_RS01470 IPR035980 Ribosomal protein S6 superfamily D4K88_RS01470 IPR020814 Ribosomal protein S6, plastid/chloroplast D4K88_RS01470 IPR020815 Ribosomal protein S6, conserved site D4K88_RS01470 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 D4K88_RS01475 IPR011344 Single-stranded DNA-binding protein D4K88_RS01475 IPR000424 Primosome PriB/single-strand DNA-binding D4K88_RS01475 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS01480 IPR036870 Ribosomal protein S18 superfamily D4K88_RS01480 IPR001648 Ribosomal protein S18 D4K88_RS01480 IPR018275 Ribosomal protein S18, conserved site D4K88_RS01495 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal D4K88_RS01495 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain D4K88_RS01495 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily D4K88_RS01495 IPR002318 Alanine-tRNA ligase, class IIc D4K88_RS01495 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria D4K88_RS01495 IPR009000 Translation protein, beta-barrel domain superfamily D4K88_RS01495 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily D4K88_RS01495 IPR012947 Threonyl/alanyl tRNA synthetase, SAD D4K88_RS01495 IPR003156 DHHA1 domain D4K88_RS01500 IPR029001 Inosine triphosphate pyrophosphatase-like D4K88_RS01500 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein D4K88_RS01510 IPR003010 Carbon-nitrogen hydrolase D4K88_RS01510 IPR036526 Carbon-nitrogen hydrolase superfamily D4K88_RS01510 IPR022843 Formamidase D4K88_RS01515 IPR029062 Class I glutamine amidotransferase-like D4K88_RS01515 IPR017926 Glutamine amidotransferase D4K88_RS01515 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain D4K88_RS01515 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain D4K88_RS01515 IPR006274 Carbamoyl-phosphate synthase, small subunit D4K88_RS01515 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily D4K88_RS01530 IPR000620 EamA domain D4K88_RS01540 IPR000489 Pterin-binding domain D4K88_RS01540 IPR016227 Dihydropteroate synthase, predicted D4K88_RS01540 IPR011005 Dihydropteroate synthase-like D4K88_RS01540 IPR006390 Dihydropteroate synthase D4K88_RS01545 IPR022754 DNA polymerase III, gamma subunit, domain III D4K88_RS01545 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal D4K88_RS01545 IPR003593 AAA+ ATPase domain D4K88_RS01545 IPR012763 DNA polymerase III, subunit gamma/ tau D4K88_RS01545 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS01555 IPR018042 Aspartate kinase, conserved site D4K88_RS01555 IPR005260 Aspartate kinase, monofunctional class D4K88_RS01555 IPR027795 CASTOR, ACT domain D4K88_RS01555 IPR001048 Aspartate/glutamate/uridylate kinase D4K88_RS01555 IPR002912 ACT domain D4K88_RS01555 IPR036393 Acetylglutamate kinase-like superfamily D4K88_RS01555 IPR041740 Aspartokinase catalytic domain D4K88_RS01555 IPR001341 Aspartate kinase D4K88_RS01560 IPR020476 NUDIX hydrolase D4K88_RS01560 IPR015797 NUDIX hydrolase-like domain superfamily D4K88_RS01560 IPR020084 NUDIX hydrolase, conserved site D4K88_RS01560 IPR000086 NUDIX hydrolase domain D4K88_RS01560 IPR022927 RNA pyrophosphohydrolase RppH D4K88_RS01565 IPR009056 Cytochrome c-like domain D4K88_RS01565 IPR036909 Cytochrome c-like domain superfamily D4K88_RS01565 IPR008168 Cytochrome c, class IC D4K88_RS01570 IPR034505 Anaerobic coproporphyrinogen-III oxidase D4K88_RS01570 IPR006638 Elp3/MiaB/NifB D4K88_RS01570 IPR007197 Radical SAM D4K88_RS01570 IPR004559 Heme chaperone HemW-like D4K88_RS01570 IPR023404 Radical SAM, alpha/beta horseshoe D4K88_RS01575 IPR003691 Putative fluoride ion transporter CrcB D4K88_RS01595 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site D4K88_RS01595 IPR001441 Decaprenyl diphosphate synthase-like D4K88_RS01595 IPR036424 Decaprenyl diphosphate synthase-like superfamily D4K88_RS01600 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS01600 IPR003593 AAA+ ATPase domain D4K88_RS01600 IPR003439 ABC transporter-like D4K88_RS01610 IPR011054 Rudiment single hybrid motif D4K88_RS01610 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal D4K88_RS01610 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily D4K88_RS01610 IPR000115 Phosphoribosylglycinamide synthetase D4K88_RS01610 IPR011761 ATP-grasp fold D4K88_RS01610 IPR013815 ATP-grasp fold, subdomain 1 D4K88_RS01610 IPR016185 Pre-ATP-grasp domain superfamily D4K88_RS01610 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D4K88_RS01610 IPR020560 Phosphoribosylglycinamide synthetase, C-domain D4K88_RS01620 IPR020889 LPS-assembly protein LptD D4K88_RS01620 IPR005653 Organic solvent tolerance-like, N-terminal D4K88_RS01620 IPR007543 LptD, C-terminal D4K88_RS01630 IPR022967 RNA-binding domain, S1 D4K88_RS01630 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS01630 IPR004087 K Homology domain D4K88_RS01630 IPR036345 Exoribonuclease, PH domain 2 superfamily D4K88_RS01630 IPR015847 Exoribonuclease, phosphorolytic domain 2 D4K88_RS01630 IPR001247 Exoribonuclease, phosphorolytic domain 1 D4K88_RS01630 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS01630 IPR003029 S1 domain D4K88_RS01630 IPR036612 K Homology domain, type 1 superfamily D4K88_RS01630 IPR012162 Polyribonucleotide nucleotidyltransferase D4K88_RS01630 IPR004088 K Homology domain, type 1 D4K88_RS01630 IPR027408 PNPase/RNase PH domain superfamily D4K88_RS01630 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily D4K88_RS01635 IPR000454 ATP synthase, F0 complex, subunit C D4K88_RS01635 IPR035921 F/V-ATP synthase subunit C superfamily D4K88_RS01635 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site D4K88_RS01635 IPR002379 V-ATPase proteolipid subunit C-like domain D4K88_RS01635 IPR038662 F1F0 ATP synthase subunit C superfamily D4K88_RS01650 IPR042122 Serine acetyltransferase, N-terminal domain superfamily D4K88_RS01650 IPR005881 Serine O-acetyltransferase D4K88_RS01650 IPR001451 Hexapeptide repeat D4K88_RS01650 IPR011004 Trimeric LpxA-like superfamily D4K88_RS01650 IPR018357 Hexapeptide transferase, conserved site D4K88_RS01660 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS01660 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS01660 IPR012327 D12 class N6 adenine-specific DNA methyltransferase D4K88_RS01670 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS01670 IPR011527 ABC transporter type 1, transmembrane domain D4K88_RS01670 IPR036640 ABC transporter type 1, transmembrane domain superfamily D4K88_RS01670 IPR003439 ABC transporter-like D4K88_RS01670 IPR039421 Type I protein exporter D4K88_RS01670 IPR017871 ABC transporter, conserved site D4K88_RS01670 IPR003593 AAA+ ATPase domain D4K88_RS01695 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal D4K88_RS01695 IPR033720 Elongation factor Tu, domain 2 D4K88_RS01695 IPR031157 Tr-type G domain, conserved site D4K88_RS01695 IPR005225 Small GTP-binding protein domain D4K88_RS01695 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS01695 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain D4K88_RS01695 IPR000795 Transcription factor, GTP-binding domain D4K88_RS01695 IPR009000 Translation protein, beta-barrel domain superfamily D4K88_RS01695 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle D4K88_RS01695 IPR004161 Translation elongation factor EFTu-like, domain 2 D4K88_RS01695 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal D4K88_RS01700 IPR011332 Zinc-binding ribosomal protein D4K88_RS01700 IPR038584 Ribosomal protein L33 superfamily D4K88_RS01700 IPR001705 Ribosomal protein L33 D4K88_RS01700 IPR018264 Ribosomal protein L33, conserved site D4K88_RS01715 IPR006645 NusG, N-terminal D4K88_RS01715 IPR014722 Ribosomal protein L2, domain 2 D4K88_RS01715 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site D4K88_RS01715 IPR005824 KOW D4K88_RS01715 IPR008991 Translation protein SH3-like domain superfamily D4K88_RS01715 IPR001062 Transcription antitermination protein, NusG D4K88_RS01715 IPR036735 NusG, N-terminal domain superfamily D4K88_RS01720 IPR020785 Ribosomal protein L11, conserved site D4K88_RS01720 IPR020784 Ribosomal protein L11, N-terminal D4K88_RS01720 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily D4K88_RS01720 IPR006519 Ribosomal protein L11, bacterial-type D4K88_RS01720 IPR036769 Ribosomal protein L11, C-terminal domain superfamily D4K88_RS01720 IPR020783 Ribosomal protein L11, C-terminal D4K88_RS01720 IPR000911 Ribosomal protein L11/L12 D4K88_RS01725 IPR005878 Ribosomal protein L1, bacterial-type D4K88_RS01725 IPR023674 Ribosomal protein L1-like D4K88_RS01725 IPR002143 Ribosomal protein L1 D4K88_RS01725 IPR023673 Ribosomal protein L1, conserved site D4K88_RS01725 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich D4K88_RS01725 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein D4K88_RS01730 IPR002363 Ribosomal protein L10, eubacterial, conserved site D4K88_RS01730 IPR022973 Ribosomal protein L10 D4K88_RS01730 IPR001790 Ribosomal protein L10P D4K88_RS01735 IPR000206 Ribosomal protein L7/L12 D4K88_RS01735 IPR008932 Ribosomal protein L7/L12, oligomerisation D4K88_RS01735 IPR013823 Ribosomal protein L7/L12, C-terminal D4K88_RS01735 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like D4K88_RS01735 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily D4K88_RS01745 IPR015712 DNA-directed RNA polymerase, subunit 2 D4K88_RS01745 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain D4K88_RS01745 IPR007641 RNA polymerase Rpb2, domain 7 D4K88_RS01745 IPR007081 RNA polymerase Rpb1, domain 5 D4K88_RS01745 IPR007083 RNA polymerase Rpb1, domain 4 D4K88_RS01745 IPR042102 RNA polymerase Rpb1, domain 3 superfamily D4K88_RS01745 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily D4K88_RS01745 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain D4K88_RS01745 IPR007645 RNA polymerase Rpb2, domain 3 D4K88_RS01745 IPR007066 RNA polymerase Rpb1, domain 3 D4K88_RS01745 IPR007080 RNA polymerase Rpb1, domain 1 D4K88_RS01745 IPR006592 RNA polymerase, N-terminal D4K88_RS01745 IPR007644 RNA polymerase, beta subunit, protrusion D4K88_RS01745 IPR007121 RNA polymerase, beta subunit, conserved site D4K88_RS01745 IPR037034 RNA polymerase Rpb2, domain 2 superfamily D4K88_RS01745 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type D4K88_RS01745 IPR000722 RNA polymerase, alpha subunit D4K88_RS01745 IPR012754 DNA-directed RNA polymerase, subunit beta-prime D4K88_RS01745 IPR007642 RNA polymerase Rpb2, domain 2 D4K88_RS01745 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily D4K88_RS01745 IPR038120 RNA polymerase Rpb1, funnel domain superfamily D4K88_RS01745 IPR014724 RNA polymerase Rpb2, OB-fold D4K88_RS01750 IPR006032 Ribosomal protein S12/S23 D4K88_RS01750 IPR005679 Ribosomal protein S12, bacterial-type D4K88_RS01750 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS01755 IPR036823 Ribosomal protein S7 domain superfamily D4K88_RS01755 IPR023798 Ribosomal protein S7 domain D4K88_RS01755 IPR020606 Ribosomal protein S7, conserved site D4K88_RS01755 IPR005717 Ribosomal protein S7, bacterial/organellar-type D4K88_RS01755 IPR000235 Ribosomal protein S5/S7 D4K88_RS01760 IPR005517 Translation elongation factor EFG/EF2, domain IV D4K88_RS01760 IPR009000 Translation protein, beta-barrel domain superfamily D4K88_RS01760 IPR000795 Transcription factor, GTP-binding domain D4K88_RS01760 IPR005225 Small GTP-binding protein domain D4K88_RS01760 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS01760 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS01760 IPR031157 Tr-type G domain, conserved site D4K88_RS01760 IPR004161 Translation elongation factor EFTu-like, domain 2 D4K88_RS01760 IPR004540 Translation elongation factor EFG/EF2 D4K88_RS01760 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS01760 IPR035649 EFG, domain V D4K88_RS01760 IPR000640 Elongation factor EFG, domain V-like D4K88_RS01760 IPR035647 EF-G domain III/V-like D4K88_RS01760 IPR009022 Elongation factor G, domain III D4K88_RS01760 IPR041095 Elongation Factor G, domain II D4K88_RS01765 IPR036812 NADP-dependent oxidoreductase domain superfamily D4K88_RS01765 IPR023210 NADP-dependent oxidoreductase domain D4K88_RS01765 IPR020471 Aldo/keto reductase D4K88_RS01780 IPR002201 Glycosyl transferase, family 9 D4K88_RS01785 IPR015807 Histidine-tRNA ligase D4K88_RS01785 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain D4K88_RS01785 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit D4K88_RS01785 IPR033656 Histidyl-anticodon-binding D4K88_RS01785 IPR036621 Anticodon-binding domain superfamily D4K88_RS01785 IPR006195 Aminoacyl-tRNA synthetase, class II D4K88_RS01785 IPR004154 Anticodon-binding D4K88_RS01790 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type D4K88_RS01790 IPR036291 NAD(P)-binding domain superfamily D4K88_RS01790 IPR012280 Semialdehyde dehydrogenase, dimerisation domain D4K88_RS01790 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site D4K88_RS01790 IPR012080 Aspartate-semialdehyde dehydrogenase D4K88_RS01790 IPR000534 Semialdehyde dehydrogenase, NAD-binding D4K88_RS01805 IPR041891 Carbonic anhydrase, prokaryotic-like D4K88_RS01805 IPR036398 Alpha carbonic anhydrase domain superfamily D4K88_RS01805 IPR001148 Alpha carbonic anhydrase domain D4K88_RS01805 IPR023561 Carbonic anhydrase, alpha-class D4K88_RS01805 IPR018338 Carbonic anhydrase, alpha-class, conserved site D4K88_RS01810 IPR036259 MFS transporter superfamily D4K88_RS01810 IPR023495 Sugar efflux transporter, putative D4K88_RS01810 IPR020846 Major facilitator superfamily domain D4K88_RS01810 IPR011701 Major facilitator superfamily D4K88_RS01825 IPR006153 Cation/H+ exchanger D4K88_RS01825 IPR038770 Sodium/solute symporter superfamily D4K88_RS01825 IPR036291 NAD(P)-binding domain superfamily D4K88_RS01825 IPR006037 Regulator of K+ conductance, C-terminal D4K88_RS01825 IPR003148 Regulator of K+ conductance, N-terminal D4K88_RS01825 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily D4K88_RS01830 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal D4K88_RS01830 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase D4K88_RS01830 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type D4K88_RS01830 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS01835 IPR036259 MFS transporter superfamily D4K88_RS01835 IPR011701 Major facilitator superfamily D4K88_RS01835 IPR020846 Major facilitator superfamily domain D4K88_RS01845 IPR008276 Concentrative nucleoside transporter D4K88_RS01845 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial D4K88_RS01845 IPR011657 Concentrative nucleoside transporter C-terminal domain D4K88_RS01845 IPR002668 Concentrative nucleoside transporter N-terminal domain D4K88_RS01850 IPR017850 Alkaline-phosphatase-like, core domain superfamily D4K88_RS01850 IPR024052 Phosphopentomutase DeoB cap domain superfamily D4K88_RS01850 IPR010045 Phosphopentomutase D4K88_RS01850 IPR006124 Metalloenzyme D4K88_RS01855 IPR035994 Nucleoside phosphorylase superfamily D4K88_RS01855 IPR004402 Purine nucleoside phosphorylase DeoD-type D4K88_RS01855 IPR018016 Nucleoside phosphorylase, conserved site D4K88_RS01855 IPR000845 Nucleoside phosphorylase domain D4K88_RS01870 IPR006043 Xanthine/uracil/vitamin C permease D4K88_RS01870 IPR026033 Azaguanine-like transporters D4K88_RS01875 IPR005964 Bacterial glucose/galactose transporter D4K88_RS01875 IPR011701 Major facilitator superfamily D4K88_RS01875 IPR036259 MFS transporter superfamily D4K88_RS01890 IPR003439 ABC transporter-like D4K88_RS01890 IPR003593 AAA+ ATPase domain D4K88_RS01890 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS01890 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type D4K88_RS01890 IPR017871 ABC transporter, conserved site D4K88_RS01895 IPR035906 MetI-like superfamily D4K88_RS01895 IPR000515 ABC transporter type 1, transmembrane domain MetI-like D4K88_RS01895 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain D4K88_RS01900 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain D4K88_RS01900 IPR000515 ABC transporter type 1, transmembrane domain MetI-like D4K88_RS01900 IPR035906 MetI-like superfamily D4K88_RS01905 IPR003706 CstA, N-terminal domain D4K88_RS01905 IPR025299 CstA, C-terminal domain D4K88_RS01915 IPR001672 Phosphoglucose isomerase (PGI) D4K88_RS01915 IPR035482 Phosphoglucose isomerase, SIS domain 2 D4K88_RS01915 IPR023096 Phosphoglucose isomerase, C-terminal D4K88_RS01915 IPR035476 Phosphoglucose isomerase, SIS domain 1 D4K88_RS01915 IPR018189 Phosphoglucose isomerase, conserved site D4K88_RS01925 IPR022890 Ferredoxin--NADP reductase, type 2 D4K88_RS01925 IPR023753 FAD/NAD(P)-binding domain D4K88_RS01925 IPR036188 FAD/NAD(P)-binding domain superfamily D4K88_RS01940 IPR010086 Flavodoxin, long chain D4K88_RS01940 IPR008254 Flavodoxin/nitric oxide synthase D4K88_RS01940 IPR029039 Flavoprotein-like superfamily D4K88_RS01945 IPR020549 Endoribonuclease YbeY, conserved site D4K88_RS01945 IPR002036 Endoribonuclease YbeY D4K88_RS01945 IPR023091 Metalloprotease catalytic domain superfamily, predicted D4K88_RS01950 IPR003812 Fido domain D4K88_RS01950 IPR036597 Fido-like domain superfamily D4K88_RS01955 IPR036291 NAD(P)-binding domain superfamily D4K88_RS01955 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain D4K88_RS01955 IPR000304 Pyrroline-5-carboxylate reductase D4K88_RS01955 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal D4K88_RS01955 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily D4K88_RS01970 IPR007235 Glycosyl transferase, family 28, C-terminal D4K88_RS01970 IPR004276 Glycosyltransferase family 28, N-terminal domain D4K88_RS01970 IPR006009 N-acetylglucosaminyltransferase, MurG D4K88_RS01975 IPR024046 Flagellar assembly factor FliW domain superfamily D4K88_RS01975 IPR003775 Flagellar assembly factor FliW D4K88_RS01980 IPR033705 Valyl tRNA synthetase, anticodon-binding domain D4K88_RS01980 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm D4K88_RS01980 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain D4K88_RS01980 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm D4K88_RS01980 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding D4K88_RS01980 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS01980 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily D4K88_RS01980 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding D4K88_RS01980 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site D4K88_RS01980 IPR002303 Valine-tRNA ligase D4K88_RS01980 IPR002300 Aminoacyl-tRNA synthetase, class Ia D4K88_RS01985 IPR036225 SRP/SRP receptor, N-terminal D4K88_RS01985 IPR022941 Signal recognition particle, SRP54 subunit D4K88_RS01985 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain D4K88_RS01985 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily D4K88_RS01985 IPR004125 Signal recognition particle, SRP54 subunit, M-domain D4K88_RS01985 IPR013822 Signal recognition particle SRP54, helical bundle D4K88_RS01985 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily D4K88_RS01985 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS01985 IPR003593 AAA+ ATPase domain D4K88_RS01985 IPR004780 Signal recognition particle protein D4K88_RS01990 IPR000307 Ribosomal protein S16 D4K88_RS01990 IPR023803 Ribosomal protein S16 domain superfamily D4K88_RS01990 IPR020592 Ribosomal protein S16, conserved site D4K88_RS02000 IPR011961 16S rRNA processing protein RimM D4K88_RS02000 IPR027275 PRC-barrel domain D4K88_RS02000 IPR011033 PRC-barrel-like superfamily D4K88_RS02000 IPR002676 RimM, N-terminal D4K88_RS02000 IPR036976 RimM, N-terminal domain superfamily D4K88_RS02000 IPR009000 Translation protein, beta-barrel domain superfamily D4K88_RS02005 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain D4K88_RS02005 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal D4K88_RS02005 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal D4K88_RS02005 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria D4K88_RS02005 IPR029028 Alpha/beta knot methyltransferases D4K88_RS02010 IPR018257 Ribosomal protein L19, conserved site D4K88_RS02010 IPR001857 Ribosomal protein L19 D4K88_RS02010 IPR038657 Ribosomal protein L19 superfamily D4K88_RS02010 IPR008991 Translation protein SH3-like domain superfamily D4K88_RS02040 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain D4K88_RS02040 IPR011034 Formyl transferase-like, C-terminal domain superfamily D4K88_RS02040 IPR036477 Formyl transferase, N-terminal domain superfamily D4K88_RS02040 IPR002376 Formyl transferase, N-terminal D4K88_RS02040 IPR037022 Formyl transferase, C-terminal domain superfamily D4K88_RS02040 IPR005793 Formyl transferase, C-terminal D4K88_RS02040 IPR005794 Methionyl-tRNA formyltransferase D4K88_RS02045 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain D4K88_RS02045 IPR004619 Type III pantothenate kinase D4K88_RS02045 IPR008988 Transcriptional repressor, C-terminal D4K88_RS02045 IPR003142 Biotin protein ligase, C-terminal D4K88_RS02045 IPR004408 Biotin--acetyl-CoA-carboxylase ligase D4K88_RS02050 IPR025669 AAA domain D4K88_RS02050 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02055 IPR036086 ParB/Sulfiredoxin superfamily D4K88_RS02055 IPR004437 ParB/RepB/Spo0J partition protein D4K88_RS02055 IPR003115 ParB/Sulfiredoxin D4K88_RS02055 IPR041468 ParB/Spo0J, HTH domain D4K88_RS02065 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily D4K88_RS02065 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast D4K88_RS02075 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02075 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain D4K88_RS02075 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily D4K88_RS02075 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site D4K88_RS02075 IPR005294 ATP synthase, F1 complex, alpha subunit D4K88_RS02075 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain D4K88_RS02075 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain D4K88_RS02075 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily D4K88_RS02075 IPR000793 ATP synthase, alpha subunit, C-terminal D4K88_RS02075 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily D4K88_RS02080 IPR000131 ATP synthase, F1 complex, gamma subunit D4K88_RS02080 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily D4K88_RS02085 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain D4K88_RS02085 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily D4K88_RS02085 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02085 IPR005722 ATP synthase, F1 complex, beta subunit D4K88_RS02085 IPR003593 AAA+ ATPase domain D4K88_RS02085 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain D4K88_RS02085 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site D4K88_RS02085 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal D4K88_RS02090 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal D4K88_RS02090 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal D4K88_RS02090 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit D4K88_RS02095 IPR002898 MotA/TolQ/ExbB proton channel D4K88_RS02095 IPR017269 Biopolymer transport ExbB-like protein 1 D4K88_RS02100 IPR003400 Biopolymer transport protein ExbD/TolR D4K88_RS02110 IPR011042 Six-bladed beta-propeller, TolB-like D4K88_RS02110 IPR014167 Tol-Pal system protein TolB D4K88_RS02110 IPR011659 WD40-like Beta Propeller D4K88_RS02115 IPR036737 OmpA-like domain superfamily D4K88_RS02115 IPR006665 OmpA-like domain D4K88_RS02115 IPR006664 Outer membrane protein, bacterial D4K88_RS02115 IPR039001 Peptidoglycan-associated lipoprotein D4K88_RS02115 IPR006690 Outer membrane protein, OmpA-like, conserved site D4K88_RS02115 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal D4K88_RS02125 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain D4K88_RS02140 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS02140 IPR018117 DNA methylase, C-5 cytosine-specific, active site D4K88_RS02140 IPR001525 C-5 cytosine methyltransferase D4K88_RS02150 IPR011491 Flagellar hook protein FlgE D4K88_RS02150 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like D4K88_RS02150 IPR010930 Flagellar basal-body/hook protein, C-terminal domain D4K88_RS02150 IPR020013 Flagellar hook-basal body protein, FlgE/F/G D4K88_RS02150 IPR019776 Flagellar basal body rod protein, conserved site D4K88_RS02150 IPR001444 Flagellar basal body rod protein, N-terminal D4K88_RS02150 IPR037058 Flagellar hook protein FlgE superfamily D4K88_RS02155 IPR029055 Nucleophile aminohydrolases, N-terminal D4K88_RS02155 IPR000101 Gamma-glutamyltranspeptidase D4K88_RS02165 IPR002686 Transposase IS200-like D4K88_RS02165 IPR036515 Transposase IS200-like superfamily D4K88_RS02170 IPR001959 Probable transposase, IS891/IS1136/IS1341 D4K88_RS02170 IPR021027 Transposase, putative, helix-turn-helix domain D4K88_RS02170 IPR010095 Transposase IS605, OrfB, C-terminal D4K88_RS02205 IPR036397 Ribonuclease H superfamily D4K88_RS02205 IPR012337 Ribonuclease H-like superfamily D4K88_RS02205 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site D4K88_RS02205 IPR002176 Crossover junction endodeoxyribonuclease RuvC D4K88_RS02220 IPR020835 Catalase superfamily D4K88_RS02220 IPR010582 Catalase immune-responsive domain D4K88_RS02220 IPR002226 Catalase haem-binding site D4K88_RS02220 IPR037060 Catalase core domain superfamily D4K88_RS02220 IPR018028 Catalase, mono-functional, haem-containing D4K88_RS02220 IPR011614 Catalase core domain D4K88_RS02220 IPR024708 Catalase active site D4K88_RS02220 IPR040333 Catalase, clade 3 D4K88_RS02220 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 D4K88_RS02235 IPR013988 PhnA protein, C-terminal D4K88_RS02235 IPR013987 PhnA protein, N-terminal D4K88_RS02235 IPR004624 PhnA protein D4K88_RS02245 IPR003763 CDP-diacylglycerol pyrophosphatase D4K88_RS02245 IPR015993 CDP-diacylglycerol pyrophosphatase, proteobacterial D4K88_RS02245 IPR036265 HIT-like superfamily D4K88_RS02245 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily D4K88_RS02250 IPR010930 Flagellar basal-body/hook protein, C-terminal domain D4K88_RS02250 IPR011491 Flagellar hook protein FlgE D4K88_RS02250 IPR037058 Flagellar hook protein FlgE superfamily D4K88_RS02250 IPR001444 Flagellar basal body rod protein, N-terminal D4K88_RS02250 IPR020013 Flagellar hook-basal body protein, FlgE/F/G D4K88_RS02250 IPR010810 Flagellin hook, IN motif D4K88_RS02250 IPR012835 Flagellar hook FlgE D4K88_RS02250 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like D4K88_RS02255 IPR000688 Hydrogenase maturation factor HypA/HybF D4K88_RS02255 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site D4K88_RS02265 IPR003835 Glycosyl transferase, family 19 D4K88_RS02270 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily D4K88_RS02270 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal D4K88_RS02270 IPR023459 Transcription elongation factor GreA/GreB family D4K88_RS02270 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal D4K88_RS02270 IPR028624 Transcription elongation factor GreA/GreB D4K88_RS02270 IPR006359 Transcription elongation factor GreA D4K88_RS02270 IPR018151 Transcription elongation factor, GreA/GreB, conserved site D4K88_RS02270 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily D4K88_RS02275 IPR033704 dUTPase, trimeric D4K88_RS02275 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase D4K88_RS02275 IPR036157 dUTPase-like superfamily D4K88_RS02275 IPR029054 dUTPase-like D4K88_RS02285 IPR032737 Plasminogen-binding protein PgbA, C-terminal D4K88_RS02285 IPR015943 WD40/YVTN repeat-like-containing domain superfamily D4K88_RS02285 IPR036322 WD40-repeat-containing domain superfamily D4K88_RS02290 IPR004619 Type III pantothenate kinase D4K88_RS02300 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase D4K88_RS02300 IPR023214 HAD superfamily D4K88_RS02300 IPR036412 HAD-like superfamily D4K88_RS02300 IPR006543 Histidinol-phosphate phosphatase D4K88_RS02300 IPR006549 HAD-superfamily hydrolase,subfamily IIIA D4K88_RS02305 IPR036291 NAD(P)-binding domain superfamily D4K88_RS02305 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase D4K88_RS02305 IPR001509 NAD-dependent epimerase/dehydratase D4K88_RS02310 IPR011913 RfaE bifunctional protein, domain I D4K88_RS02310 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS02310 IPR011611 Carbohydrate kinase PfkB D4K88_RS02310 IPR011914 RfaE bifunctional protein, domain II D4K88_RS02310 IPR023030 Bifunctional protein HldE D4K88_RS02310 IPR004821 Cytidyltransferase-like domain D4K88_RS02310 IPR029056 Ribokinase-like D4K88_RS02315 IPR001347 Sugar isomerase (SIS) D4K88_RS02315 IPR004515 Phosphoheptose isomerase D4K88_RS02315 IPR035461 GmhA/DiaA D4K88_RS02325 IPR013785 Aldolase-type TIM barrel D4K88_RS02325 IPR005994 Guanosine monophosphate reductase, type2 D4K88_RS02325 IPR015875 IMP dehydrogenase / GMP reductase, conserved site D4K88_RS02325 IPR001093 IMP dehydrogenase/GMP reductase D4K88_RS02330 IPR003439 ABC transporter-like D4K88_RS02330 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02330 IPR032781 ABC-transporter extension domain D4K88_RS02330 IPR003593 AAA+ ATPase domain D4K88_RS02340 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily D4K88_RS02340 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase D4K88_RS02350 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS02350 IPR004546 Restriction endonuclease, type I, HsdM D4K88_RS02350 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS02350 IPR003356 DNA methylase, adenine-specific D4K88_RS02350 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily D4K88_RS02350 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain D4K88_RS02355 IPR000055 Restriction endonuclease, type I, HsdS D4K88_RS02360 IPR014001 Helicase superfamily 1/2, ATP-binding domain D4K88_RS02360 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02360 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal D4K88_RS02360 IPR004473 Restriction endonuclease, type I, HsdR D4K88_RS02360 IPR022625 Type-1 restriction enzyme R protein, C-terminal D4K88_RS02360 IPR040980 SWI2/SNF2 ATPase D4K88_RS02365 IPR000417 Hydroxyethylthiazole kinase D4K88_RS02365 IPR029056 Ribokinase-like D4K88_RS02370 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase D4K88_RS02370 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase D4K88_RS02370 IPR029056 Ribokinase-like D4K88_RS02375 IPR022998 Thiamine phosphate synthase/TenI D4K88_RS02375 IPR036206 Thiamin phosphate synthase superfamily D4K88_RS02375 IPR013785 Aldolase-type TIM barrel D4K88_RS02375 IPR034291 Thiamine phosphate synthase D4K88_RS02385 IPR035929 CoaB-like superfamily D4K88_RS02385 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC D4K88_RS02385 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal D4K88_RS02385 IPR036551 Flavin prenyltransferase-like D4K88_RS02385 IPR003382 Flavoprotein D4K88_RS02390 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) D4K88_RS02390 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain D4K88_RS02390 IPR036291 NAD(P)-binding domain superfamily D4K88_RS02415 IPR000119 Histone-like DNA-binding protein D4K88_RS02415 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily D4K88_RS02420 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02420 IPR015946 K homology domain-like, alpha/beta D4K88_RS02420 IPR005225 Small GTP-binding protein domain D4K88_RS02420 IPR016484 GTP-binding protein EngA D4K88_RS02420 IPR006073 GTP binding domain D4K88_RS02420 IPR031166 EngA-type guanine nucleotide-binding (G) domain D4K88_RS02420 IPR032859 GTPase Der, C-terminal KH-domain-like D4K88_RS02435 IPR001977 Dephospho-CoA kinase D4K88_RS02435 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02440 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit D4K88_RS02440 IPR000120 Amidase D4K88_RS02440 IPR020556 Amidase, conserved site D4K88_RS02440 IPR023631 Amidase signature domain D4K88_RS02440 IPR036928 Amidase signature (AS) superfamily D4K88_RS02445 IPR005990 Inosine-5'-monophosphate dehydrogenase D4K88_RS02445 IPR015875 IMP dehydrogenase / GMP reductase, conserved site D4K88_RS02445 IPR001093 IMP dehydrogenase/GMP reductase D4K88_RS02445 IPR000644 CBS domain D4K88_RS02445 IPR013785 Aldolase-type TIM barrel D4K88_RS02450 IPR000568 ATP synthase, F0 complex, subunit A D4K88_RS02450 IPR023011 ATP synthase, F0 complex, subunit A, active site D4K88_RS02450 IPR035908 ATP synthase, F0 complex, subunit A superfamily D4K88_RS02455 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily D4K88_RS02455 IPR035979 RNA-binding domain superfamily D4K88_RS02455 IPR000504 RNA recognition motif domain D4K88_RS02465 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site D4K88_RS02465 IPR023753 FAD/NAD(P)-binding domain D4K88_RS02465 IPR005982 Thioredoxin reductase D4K88_RS02465 IPR036188 FAD/NAD(P)-binding domain superfamily D4K88_RS02470 IPR017937 Thioredoxin, conserved site D4K88_RS02470 IPR036249 Thioredoxin-like superfamily D4K88_RS02470 IPR005746 Thioredoxin D4K88_RS02470 IPR013766 Thioredoxin domain D4K88_RS02475 IPR003509 Uncharacterised protein family UPF0102 D4K88_RS02475 IPR011856 tRNA endonuclease-like domain superfamily D4K88_RS02475 IPR011335 Restriction endonuclease type II-like D4K88_RS02480 IPR019811 Homoserine dehydrogenase, conserved site D4K88_RS02480 IPR001342 Homoserine dehydrogenase, catalytic D4K88_RS02480 IPR016204 Homoserine dehydrogenase D4K88_RS02480 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding D4K88_RS02480 IPR036291 NAD(P)-binding domain superfamily D4K88_RS02480 IPR002912 ACT domain D4K88_RS02485 IPR035901 GIY-YIG endonuclease superfamily D4K88_RS02485 IPR000305 GIY-YIG endonuclease D4K88_RS02485 IPR038476 UvrC homology region 2 superfamily D4K88_RS02485 IPR001162 UvrC family homology region D4K88_RS02485 IPR004791 UvrABC system, subunit C D4K88_RS02485 IPR036876 UVR domain superfamily D4K88_RS02485 IPR001943 UVR domain D4K88_RS02485 IPR010994 RuvA domain 2-like D4K88_RS02500 IPR000644 CBS domain D4K88_RS02500 IPR017871 ABC transporter, conserved site D4K88_RS02500 IPR003439 ABC transporter-like D4K88_RS02500 IPR003593 AAA+ ATPase domain D4K88_RS02500 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02500 IPR005892 Glycine betaine transport ATP-binding subunit D4K88_RS02505 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain D4K88_RS02515 IPR036737 OmpA-like domain superfamily D4K88_RS02515 IPR006665 OmpA-like domain D4K88_RS02515 IPR025713 Motility protein B, N-terminal domain D4K88_RS02520 IPR002898 MotA/TolQ/ExbB proton channel D4K88_RS02520 IPR000540 Flagellar motor protein MotA, conserved site D4K88_RS02525 IPR035985 Ubiquitin-activating enzyme D4K88_RS02525 IPR000594 THIF-type NAD/FAD binding fold D4K88_RS02530 IPR001279 Metallo-beta-lactamase D4K88_RS02530 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like D4K88_RS02550 IPR005503 Flagellar basal body-associated protein FliL D4K88_RS02555 IPR002582 Holo-[acyl carrier protein] synthase D4K88_RS02555 IPR008278 4'-phosphopantetheinyl transferase domain D4K88_RS02555 IPR004568 Phosphopantetheine-protein transferase domain D4K88_RS02555 IPR037143 4'-phosphopantetheinyl transferase domain superfamily D4K88_RS02575 IPR032677 GTP cyclohydrolase II D4K88_RS02575 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily D4K88_RS02575 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB D4K88_RS02575 IPR036144 RibA-like superfamily D4K88_RS02585 IPR036144 RibA-like superfamily D4K88_RS02585 IPR000926 GTP cyclohydrolase II, RibA D4K88_RS02585 IPR032677 GTP cyclohydrolase II D4K88_RS02595 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily D4K88_RS02595 IPR003448 Molybdopterin biosynthesis MoaE D4K88_RS02600 IPR036425 MoaB/Mog-like domain superfamily D4K88_RS02600 IPR001453 MoaB/Mog domain D4K88_RS02600 IPR008284 Molybdenum cofactor biosynthesis, conserved site D4K88_RS02605 IPR023045 Molybdenum cofactor biosynthesis C D4K88_RS02605 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain D4K88_RS02605 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily D4K88_RS02610 IPR038531 Neuraminyllactose-binding hemagglutinin superfamily D4K88_RS02610 IPR007876 Neuraminyllactose-binding hemagglutinin D4K88_RS02620 IPR005215 Trigger factor D4K88_RS02620 IPR008880 Trigger factor, C-terminal D4K88_RS02620 IPR036611 Trigger factor ribosome-binding domain superfamily D4K88_RS02620 IPR008881 Trigger factor, ribosome-binding, bacterial D4K88_RS02620 IPR037041 Trigger factor, C-terminal domain superfamily D4K88_RS02620 IPR027304 Trigger factor/SurA domain superfamily D4K88_RS02620 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain D4K88_RS02625 IPR029045 ClpP/crotonase-like domain superfamily D4K88_RS02625 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA D4K88_RS02625 IPR033135 ClpP, histidine active site D4K88_RS02625 IPR001907 ATP-dependent Clp protease proteolytic subunit D4K88_RS02625 IPR018215 ClpP, Ser active site D4K88_RS02630 IPR036821 Peptide deformylase superfamily D4K88_RS02630 IPR023635 Peptide deformylase D4K88_RS02635 IPR025158 Mg chelatase-related protein, C-terminal domain D4K88_RS02635 IPR000523 Magnesium chelatase ChlI domain D4K88_RS02635 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02635 IPR001208 MCM domain D4K88_RS02635 IPR004482 Mg chelatase-related protein D4K88_RS02635 IPR003593 AAA+ ATPase domain D4K88_RS02635 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS02635 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS02640 IPR023299 P-type ATPase, cytoplasmic domain N D4K88_RS02640 IPR023298 P-type ATPase, transmembrane domain superfamily D4K88_RS02640 IPR008250 P-type ATPase, A domain superfamily D4K88_RS02640 IPR036412 HAD-like superfamily D4K88_RS02640 IPR023214 HAD superfamily D4K88_RS02640 IPR017969 Heavy-metal-associated, conserved site D4K88_RS02640 IPR006121 Heavy metal-associated domain, HMA D4K88_RS02640 IPR036163 Heavy metal-associated domain superfamily D4K88_RS02640 IPR027256 P-type ATPase, subfamily IB D4K88_RS02640 IPR001757 P-type ATPase D4K88_RS02640 IPR018303 P-type ATPase, phosphorylation site D4K88_RS02645 IPR000055 Restriction endonuclease, type I, HsdS D4K88_RS02660 IPR036670 SecA, preprotein cross-linking domain superfamily D4K88_RS02660 IPR011130 SecA, preprotein cross-linking domain D4K88_RS02660 IPR011116 SecA Wing/Scaffold D4K88_RS02660 IPR014018 SecA motor DEAD D4K88_RS02660 IPR011115 SecA DEAD-like, N-terminal D4K88_RS02660 IPR020937 SecA conserved site D4K88_RS02660 IPR000185 Protein translocase subunit SecA D4K88_RS02660 IPR004027 SEC-C motif D4K88_RS02660 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02660 IPR036266 SecA, Wing/Scaffold superfamily D4K88_RS02665 IPR029046 Lipoprotein localisation LolA/LolB/LppX D4K88_RS02665 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria D4K88_RS02665 IPR004564 Outer membrane lipoprotein carrier protein LolA-like D4K88_RS02695 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain D4K88_RS02695 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel D4K88_RS02695 IPR018136 Aconitase family, 4Fe-4S cluster binding site D4K88_RS02695 IPR036008 Aconitase, iron-sulfur domain D4K88_RS02695 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 D4K88_RS02695 IPR015933 Aconitase B, HEAT-like domain D4K88_RS02695 IPR036288 Aconitase B, HEAT-like domain superfamily D4K88_RS02695 IPR015929 Aconitase B, swivel D4K88_RS02695 IPR015932 Aconitase, domain 2 D4K88_RS02695 IPR004406 Aconitase B D4K88_RS02705 IPR036393 Acetylglutamate kinase-like superfamily D4K88_RS02705 IPR001048 Aspartate/glutamate/uridylate kinase D4K88_RS02705 IPR011817 Uridylate kinase D4K88_RS02705 IPR015963 Uridylate kinase, bacteria D4K88_RS02710 IPR006110 RNA polymerase, subunit omega/K/RPB6 D4K88_RS02710 IPR036161 RPB6/omega subunit-like superfamily D4K88_RS02710 IPR003716 DNA-directed RNA polymerase, omega subunit D4K88_RS02710 IPR012293 RNA polymerase subunit, RPB6/omega D4K88_RS02715 IPR033655 RelA, TGS domain D4K88_RS02715 IPR012676 TGS-like D4K88_RS02715 IPR004095 TGS D4K88_RS02715 IPR007685 RelA/SpoT D4K88_RS02715 IPR004811 RelA/SpoT family D4K88_RS02715 IPR003607 HD/PDEase domain D4K88_RS02715 IPR002912 ACT domain D4K88_RS02715 IPR012675 Beta-grasp domain superfamily D4K88_RS02720 IPR002305 Aminoacyl-tRNA synthetase, class Ic D4K88_RS02720 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 D4K88_RS02720 IPR024088 Tyrosine-tRNA ligase, bacterial-type D4K88_RS02720 IPR002942 RNA-binding S4 domain D4K88_RS02720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS02720 IPR036986 RNA-binding S4 domain superfamily D4K88_RS02720 IPR002307 Tyrosine-tRNA ligase D4K88_RS02720 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site D4K88_RS02730 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain D4K88_RS02740 IPR006135 Type III secretion system substrate exporter D4K88_RS02740 IPR029025 Type III secretion system substrate exporter, C-terminal D4K88_RS02740 IPR006136 Flagellar biosynthetic protein FlhB D4K88_RS02745 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS02745 IPR013482 Molybdenum cofactor guanylyltransferase D4K88_RS02745 IPR025877 MobA-like NTP transferase D4K88_RS02750 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site D4K88_RS02750 IPR006638 Elp3/MiaB/NifB D4K88_RS02750 IPR007197 Radical SAM D4K88_RS02750 IPR010505 Molybdenum cofactor synthesis C-terminal D4K88_RS02750 IPR013483 Molybdenum cofactor biosynthesis protein A D4K88_RS02750 IPR013785 Aldolase-type TIM barrel D4K88_RS02760 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily D4K88_RS02760 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain D4K88_RS02760 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02760 IPR004390 Signal-recognition particle receptor FtsY D4K88_RS02775 IPR004088 K Homology domain, type 1 D4K88_RS02775 IPR003607 HD/PDEase domain D4K88_RS02775 IPR017705 Ribonuclease Y D4K88_RS02775 IPR022711 Ribonuclease Y, N-terminal D4K88_RS02775 IPR036612 K Homology domain, type 1 superfamily D4K88_RS02775 IPR004087 K Homology domain D4K88_RS02775 IPR006675 HDIG domain D4K88_RS02775 IPR006674 HD domain D4K88_RS02780 IPR002528 Multi antimicrobial extrusion protein D4K88_RS02785 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal D4K88_RS02785 IPR032813 Putative Na+/H+ antiporter, N-terminal D4K88_RS02790 IPR036526 Carbon-nitrogen hydrolase superfamily D4K88_RS02790 IPR003010 Carbon-nitrogen hydrolase D4K88_RS02800 IPR036873 Rhodanese-like domain superfamily D4K88_RS02800 IPR001763 Rhodanese-like domain D4K88_RS02800 IPR035985 Ubiquitin-activating enzyme D4K88_RS02800 IPR000594 THIF-type NAD/FAD binding fold D4K88_RS02810 IPR036584 Flagellar protein FliS superfamily D4K88_RS02810 IPR003713 Flagellar protein FliS D4K88_RS02835 IPR003439 ABC transporter-like D4K88_RS02835 IPR017871 ABC transporter, conserved site D4K88_RS02835 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal D4K88_RS02835 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain D4K88_RS02835 IPR003593 AAA+ ATPase domain D4K88_RS02835 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02835 IPR026253 Methionine import ATP-binding protein MetN D4K88_RS02835 IPR018449 NIL domain D4K88_RS02840 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS02840 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type D4K88_RS02850 IPR006145 Pseudouridine synthase, RsuA/RluA D4K88_RS02850 IPR002942 RNA-binding S4 domain D4K88_RS02850 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site D4K88_RS02850 IPR006225 Pseudouridine synthase, RluC/RluD D4K88_RS02850 IPR036986 RNA-binding S4 domain superfamily D4K88_RS02850 IPR020103 Pseudouridine synthase, catalytic domain superfamily D4K88_RS02855 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily D4K88_RS02855 IPR006073 GTP binding domain D4K88_RS02855 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS02855 IPR019991 GTP-binding protein, ribosome biogenesis D4K88_RS02855 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain D4K88_RS02855 IPR016478 GTPase, MTG1 D4K88_RS02865 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site D4K88_RS02865 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB D4K88_RS02865 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA D4K88_RS02875 IPR000836 Phosphoribosyltransferase domain D4K88_RS02875 IPR029057 Phosphoribosyltransferase-like D4K88_RS02875 IPR005946 Ribose-phosphate pyrophosphokinase D4K88_RS02875 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site D4K88_RS02875 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain D4K88_RS02875 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type D4K88_RS02880 IPR036265 HIT-like superfamily D4K88_RS02880 IPR039383 FHIT family D4K88_RS02880 IPR001310 Histidine triad (HIT) protein D4K88_RS02880 IPR011146 HIT-like domain D4K88_RS02885 IPR013221 Mur ligase, central D4K88_RS02885 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase D4K88_RS02885 IPR004101 Mur ligase, C-terminal D4K88_RS02885 IPR036615 Mur ligase, C-terminal domain superfamily D4K88_RS02885 IPR036565 Mur-like, catalytic domain superfamily D4K88_RS02885 IPR000713 Mur ligase, N-terminal catalytic domain D4K88_RS02885 IPR035911 MurE/MurF, N-terminal D4K88_RS02895 IPR016185 Pre-ATP-grasp domain superfamily D4K88_RS02895 IPR011095 D-alanine--D-alanine ligase, C-terminal D4K88_RS02895 IPR011761 ATP-grasp fold D4K88_RS02895 IPR005905 D-alanine--D-alanine ligase D4K88_RS02895 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site D4K88_RS02895 IPR011127 D-alanine--D-alanine ligase, N-terminal domain D4K88_RS02895 IPR013815 ATP-grasp fold, subdomain 1 D4K88_RS02900 IPR036681 PgpA-like superfamily D4K88_RS02900 IPR026037 Phosphatidylglycerophosphatase A D4K88_RS02900 IPR007686 YutG/PgpA domain D4K88_RS02905 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase D4K88_RS02905 IPR000192 Aminotransferase class V domain D4K88_RS02905 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS02905 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS02905 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS02910 IPR000836 Phosphoribosyltransferase domain D4K88_RS02910 IPR029057 Phosphoribosyltransferase-like D4K88_RS02910 IPR023747 Xanthine-guanine phosphoribosyltransferase D4K88_RS02915 IPR020612 Methylthiotransferase, conserved site D4K88_RS02915 IPR005839 Methylthiotransferase D4K88_RS02915 IPR005840 Ribosomal protein S12 methylthiotransferase RimO D4K88_RS02915 IPR023404 Radical SAM, alpha/beta horseshoe D4K88_RS02915 IPR013848 Methylthiotransferase, N-terminal D4K88_RS02915 IPR038135 Methylthiotransferase, N-terminal domain superfamily D4K88_RS02915 IPR007197 Radical SAM D4K88_RS02915 IPR006638 Elp3/MiaB/NifB D4K88_RS02945 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal D4K88_RS02945 IPR012094 tRNA(Ile)-lysidine synthase D4K88_RS02945 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal D4K88_RS02945 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS02950 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal D4K88_RS02950 IPR013785 Aldolase-type TIM barrel D4K88_RS02950 IPR018517 tRNA-dihydrouridine synthase, conserved site D4K88_RS02950 IPR001269 tRNA-dihydrouridine synthase D4K88_RS02950 IPR035587 DUS-like, FMN-binding domain D4K88_RS02965 IPR004550 L-asparaginase, type II D4K88_RS02965 IPR027474 L-asparaginase, N-terminal D4K88_RS02965 IPR027473 L-asparaginase, C-terminal D4K88_RS02965 IPR040919 Asparaginase/glutaminase, C-terminal D4K88_RS02965 IPR027475 Asparaginase/glutaminase, active site 2 D4K88_RS02965 IPR006034 Asparaginase/glutaminase-like D4K88_RS02965 IPR036152 Asparaginase/glutaminase-like superfamily D4K88_RS02965 IPR020827 Asparaginase/glutaminase, active site 1 D4K88_RS02965 IPR037152 L-asparaginase, N-terminal domain superfamily D4K88_RS02970 IPR004668 Anaerobic c4-dicarboxylate membrane transporter D4K88_RS02995 IPR001123 Amino acid exporter protein, LeuE-type D4K88_RS02995 IPR004777 L-lysine exporter/arginine exporter D4K88_RS03000 IPR012763 DNA polymerase III, subunit gamma/ tau D4K88_RS03000 IPR021029 DNA polymerase III, tau subunit, domain V D4K88_RS03000 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03000 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily D4K88_RS03000 IPR003593 AAA+ ATPase domain D4K88_RS03000 IPR022754 DNA polymerase III, gamma subunit, domain III D4K88_RS03000 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal D4K88_RS03010 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03010 IPR030921 LPS export ABC transporter, ATP-binding protein LptB D4K88_RS03010 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal D4K88_RS03010 IPR003593 AAA+ ATPase domain D4K88_RS03010 IPR003439 ABC transporter-like D4K88_RS03010 IPR017871 ABC transporter, conserved site D4K88_RS03015 IPR007046 RNA polymerase sigma factor 54, core-binding domain D4K88_RS03015 IPR007634 RNA polymerase sigma factor 54, DNA-binding D4K88_RS03015 IPR000394 RNA polymerase sigma factor 54 D4K88_RS03015 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily D4K88_RS03020 IPR003812 Fido domain D4K88_RS03020 IPR036597 Fido-like domain superfamily D4K88_RS03020 IPR010093 SinI-like, DNA-binding domain D4K88_RS03020 IPR041657 Helix-turn-helix domain, group 17 D4K88_RS03020 IPR040198 Fido domain-containing protein D4K88_RS03035 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal D4K88_RS03035 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal D4K88_RS03035 IPR002747 SAM-dependent chlorinase/fluorinase D4K88_RS03045 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily D4K88_RS03045 IPR002903 Ribosomal RNA small subunit methyltransferase H D4K88_RS03045 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS03055 IPR004602 UvrABC system subunit A D4K88_RS03055 IPR041552 UvrA DNA-binding domain D4K88_RS03055 IPR003439 ABC transporter-like D4K88_RS03055 IPR017871 ABC transporter, conserved site D4K88_RS03055 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03055 IPR041102 UvrA, interaction domain D4K88_RS03065 IPR002078 RNA polymerase sigma factor 54 interaction domain D4K88_RS03065 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 D4K88_RS03065 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 D4K88_RS03065 IPR029995 Transcriptional activator SfnR/FlbD D4K88_RS03065 IPR011006 CheY-like superfamily D4K88_RS03065 IPR003593 AAA+ ATPase domain D4K88_RS03065 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS03065 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03075 IPR013760 DNA topoisomerase, type IIA-like domain superfamily D4K88_RS03075 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily D4K88_RS03075 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta D4K88_RS03075 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal D4K88_RS03075 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal D4K88_RS03075 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat D4K88_RS03075 IPR005743 DNA gyrase, subunit A D4K88_RS03080 IPR033718 Diacylglycerol kinase, prokaryotic D4K88_RS03080 IPR000829 DAGK family D4K88_RS03080 IPR036945 Diacylglycerol kinase (DAGK) superfamily D4K88_RS03095 IPR016750 Acetophenone carboxylase beta subunit/Acetone carboxylase gamma subunit D4K88_RS03100 IPR003692 Hydantoinase B/oxoprolinase D4K88_RS03105 IPR002821 Hydantoinase A/oxoprolinase D4K88_RS03105 IPR008040 Hydantoinaseoxoprolinase, N-terminal D4K88_RS03115 IPR006161 Conserved hypothetical protein CHP00336 D4K88_RS03115 IPR006160 Short chain fatty acid transporter AtoE D4K88_RS03120 IPR037171 NagB/RpiA transferase-like D4K88_RS03120 IPR004164 Coenzyme A transferase active site D4K88_RS03120 IPR004165 Coenzyme A transferase family I D4K88_RS03120 IPR012791 3-oxoacid CoA-transferase, subunit B D4K88_RS03125 IPR004165 Coenzyme A transferase family I D4K88_RS03125 IPR004163 Coenzyme A transferase binding site D4K88_RS03125 IPR012792 3-oxoacid CoA-transferase, subunit A D4K88_RS03125 IPR037171 NagB/RpiA transferase-like D4K88_RS03130 IPR016039 Thiolase-like D4K88_RS03130 IPR020616 Thiolase, N-terminal D4K88_RS03130 IPR020613 Thiolase, conserved site D4K88_RS03130 IPR020617 Thiolase, C-terminal D4K88_RS03130 IPR020610 Thiolase, active site D4K88_RS03130 IPR002155 Thiolase D4K88_RS03130 IPR020615 Thiolase, acyl-enzyme intermediate active site D4K88_RS03140 IPR003373 Ferrous iron transport protein B D4K88_RS03140 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain D4K88_RS03140 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03140 IPR030389 FeoB-type guanine nucleotide-binding (G) domain D4K88_RS03140 IPR011640 Ferrous iron transport protein B, C-terminal D4K88_RS03150 IPR005838 Type III secretion system inner membrane P protein D4K88_RS03150 IPR005837 Flagellar transport protein FliP D4K88_RS03160 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS03160 IPR011004 Trimeric LpxA-like superfamily D4K88_RS03160 IPR025877 MobA-like NTP transferase D4K88_RS03160 IPR018357 Hexapeptide transferase, conserved site D4K88_RS03160 IPR001451 Hexapeptide repeat D4K88_RS03160 IPR038009 GlmU, C-terminal LbH domain D4K88_RS03160 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase D4K88_RS03175 IPR039718 Ribonucleoside-diphosphate reductase large subunit D4K88_RS03175 IPR013509 Ribonucleotide reductase large subunit, N-terminal D4K88_RS03175 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal D4K88_RS03175 IPR005144 ATP-cone domain D4K88_RS03175 IPR000788 Ribonucleotide reductase large subunit, C-terminal D4K88_RS03175 IPR013346 Ribonucleotide reductase, class I , alpha subunit D4K88_RS03185 IPR002781 Transmembrane protein TauE-like D4K88_RS03190 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site D4K88_RS03190 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding D4K88_RS03190 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain D4K88_RS03190 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain D4K88_RS03190 IPR023546 Methylated-DNA--protein-cysteine methyltransferase D4K88_RS03190 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily D4K88_RS03190 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS03195 IPR013762 Integrase-like, catalytic domain superfamily D4K88_RS03195 IPR033683 Tyrosine recombinase XerH D4K88_RS03195 IPR011010 DNA breaking-rejoining enzyme, catalytic core D4K88_RS03195 IPR041308 Xer recombinase, N-terminal D4K88_RS03195 IPR002104 Integrase, catalytic domain D4K88_RS03210 IPR004839 Aminotransferase, class I/classII D4K88_RS03210 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS03210 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS03210 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS03210 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site D4K88_RS03230 IPR004017 Cysteine-rich domain D4K88_RS03230 IPR022822 Lactate utilization protein A D4K88_RS03235 IPR023404 Radical SAM, alpha/beta horseshoe D4K88_RS03235 IPR007197 Radical SAM D4K88_RS03235 IPR010723 HemN, C-terminal D4K88_RS03235 IPR034505 Anaerobic coproporphyrinogen-III oxidase D4K88_RS03235 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN D4K88_RS03235 IPR006638 Elp3/MiaB/NifB D4K88_RS03240 IPR019724 Uncharacterised protein family UPF0763 D4K88_RS03245 IPR035904 Chorismate synthase AroC superfamily D4K88_RS03245 IPR000453 Chorismate synthase D4K88_RS03245 IPR020541 Chorismate synthase, conserved site D4K88_RS03250 IPR036389 Ribonuclease III, endonuclease domain superfamily D4K88_RS03250 IPR000999 Ribonuclease III domain D4K88_RS03250 IPR011907 Ribonuclease III D4K88_RS03250 IPR014720 Double-stranded RNA-binding domain D4K88_RS03255 IPR022892 Ribonuclease HI D4K88_RS03255 IPR002156 Ribonuclease H domain D4K88_RS03255 IPR012337 Ribonuclease H-like superfamily D4K88_RS03255 IPR036397 Ribonuclease H superfamily D4K88_RS03270 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain D4K88_RS03270 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 D4K88_RS03270 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit D4K88_RS03270 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E D4K88_RS03270 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site D4K88_RS03270 IPR018027 Asn/Gln amidotransferase D4K88_RS03270 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like D4K88_RS03270 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 D4K88_RS03270 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic D4K88_RS03280 IPR007197 Radical SAM D4K88_RS03280 IPR020050 FO synthase, subunit 2 D4K88_RS03280 IPR034405 F420, menaquinone cofactor biosynthesis D4K88_RS03280 IPR006638 Elp3/MiaB/NifB D4K88_RS03280 IPR013785 Aldolase-type TIM barrel D4K88_RS03280 IPR022431 Cyclic dehypoxanthine futalosine synthase D4K88_RS03285 IPR000184 Bacterial surface antigen (D15) D4K88_RS03285 IPR034746 POTRA domain D4K88_RS03285 IPR023707 Outer membrane protein assembly factor BamA D4K88_RS03285 IPR010827 POTRA domain, BamA/TamA-like D4K88_RS03285 IPR039910 Surface antigen D15-like D4K88_RS03290 IPR007197 Radical SAM D4K88_RS03290 IPR022432 Aminodeoxyfutalosine synthase D4K88_RS03290 IPR006638 Elp3/MiaB/NifB D4K88_RS03290 IPR034405 F420, menaquinone cofactor biosynthesis D4K88_RS03290 IPR020050 FO synthase, subunit 2 D4K88_RS03290 IPR013785 Aldolase-type TIM barrel D4K88_RS03295 IPR001519 Ferritin D4K88_RS03295 IPR012347 Ferritin-like D4K88_RS03295 IPR009040 Ferritin-like diiron domain D4K88_RS03295 IPR009078 Ferritin-like superfamily D4K88_RS03295 IPR041719 Ferritin, prokaryotic-type D4K88_RS03295 IPR008331 Ferritin/DPS protein domain D4K88_RS03300 IPR023214 HAD superfamily D4K88_RS03300 IPR036412 HAD-like superfamily D4K88_RS03315 IPR004708 Aspartate ammonia-lyase D4K88_RS03315 IPR018951 Fumarase C, C-terminal D4K88_RS03315 IPR020557 Fumarate lyase, conserved site D4K88_RS03315 IPR000362 Fumarate lyase family D4K88_RS03315 IPR022761 Fumarate lyase, N-terminal D4K88_RS03315 IPR008948 L-Aspartase-like D4K88_RS03315 IPR024083 Fumarase/histidase, N-terminal D4K88_RS03320 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase D4K88_RS03320 IPR001986 Enolpyruvate transferase domain D4K88_RS03320 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta D4K88_RS03320 IPR036968 Enolpyruvate transferase domain superfamily D4K88_RS03330 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type D4K88_RS03330 IPR005835 Nucleotidyl transferase domain D4K88_RS03330 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS03335 IPR023346 Lysozyme-like domain superfamily D4K88_RS03335 IPR024570 Murein transglycosylase-C, N-terminal D4K88_RS03335 IPR023664 Murein transglycosylase-C D4K88_RS03335 IPR008258 Transglycosylase SLT domain 1 D4K88_RS03335 IPR000189 Prokaryotic transglycosylase, active site D4K88_RS03345 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 D4K88_RS03345 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site D4K88_RS03345 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding D4K88_RS03345 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial D4K88_RS03345 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS03345 IPR000924 Glutamyl/glutaminyl-tRNA synthetase D4K88_RS03345 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain D4K88_RS03350 IPR033878 Nitroreductase NfsB-like D4K88_RS03350 IPR029479 Nitroreductase D4K88_RS03350 IPR000415 Nitroreductase-like D4K88_RS03355 IPR015815 3-hydroxyisobutyrate dehydrogenase-related D4K88_RS03355 IPR030876 3-sulfolactaldehyde reductase D4K88_RS03355 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain D4K88_RS03355 IPR036291 NAD(P)-binding domain superfamily D4K88_RS03355 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding D4K88_RS03355 IPR013328 6-phosphogluconate dehydrogenase, domain 2 D4K88_RS03355 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily D4K88_RS03355 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site D4K88_RS03365 IPR018317 Queuosine biosynthesis protein QueC D4K88_RS03365 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS03390 IPR023430 Peptidase HybD-like domain superfamily D4K88_RS03390 IPR000671 Peptidase A31 family D4K88_RS03395 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit D4K88_RS03395 IPR016174 Di-haem cytochrome, transmembrane D4K88_RS03395 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase D4K88_RS03400 IPR029014 [NiFe]-hydrogenase, large subunit D4K88_RS03400 IPR001501 Nickel-dependent hydrogenase, large subunit D4K88_RS03400 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site D4K88_RS03405 IPR027394 Cytochrome-c3 hydrogenase, C-terminal D4K88_RS03405 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit D4K88_RS03405 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily D4K88_RS03405 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily D4K88_RS03405 IPR001821 [NiFe]-hydrogenase, small subunit D4K88_RS03405 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal D4K88_RS03405 IPR006311 Twin-arginine translocation pathway, signal sequence D4K88_RS03410 IPR029039 Flavoprotein-like superfamily D4K88_RS03410 IPR003680 Flavodoxin-like fold D4K88_RS03425 IPR001451 Hexapeptide repeat D4K88_RS03425 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family D4K88_RS03425 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily D4K88_RS03425 IPR011004 Trimeric LpxA-like superfamily D4K88_RS03425 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain D4K88_RS03430 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type D4K88_RS03430 IPR011005 Dihydropteroate synthase-like D4K88_RS03430 IPR036849 Enolase-like, C-terminal domain superfamily D4K88_RS03430 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial D4K88_RS03435 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS03435 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site D4K88_RS03435 IPR004839 Aminotransferase, class I/classII D4K88_RS03435 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS03435 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS03440 IPR013221 Mur ligase, central D4K88_RS03440 IPR036615 Mur ligase, C-terminal domain superfamily D4K88_RS03440 IPR005758 UDP-N-acetylmuramate--L-alanine ligase D4K88_RS03440 IPR000713 Mur ligase, N-terminal catalytic domain D4K88_RS03440 IPR036565 Mur-like, catalytic domain superfamily D4K88_RS03440 IPR004101 Mur ligase, C-terminal D4K88_RS03450 IPR005747 Endonuclease MutS2 D4K88_RS03450 IPR007696 DNA mismatch repair protein MutS, core D4K88_RS03450 IPR036187 DNA mismatch repair protein MutS, core domain superfamily D4K88_RS03450 IPR002625 Smr domain D4K88_RS03450 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03450 IPR000432 DNA mismatch repair protein MutS, C-terminal D4K88_RS03450 IPR036063 Smr domain superfamily D4K88_RS03455 IPR036649 Inorganic pyrophosphatase superfamily D4K88_RS03455 IPR008162 Inorganic pyrophosphatase D4K88_RS03470 IPR000850 Adenylate kinase/UMP-CMP kinase D4K88_RS03470 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03470 IPR033690 Adenylate kinase, conserved site D4K88_RS03475 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type D4K88_RS03475 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS03475 IPR029351 GAD domain D4K88_RS03475 IPR004115 GAD-like domain superfamily D4K88_RS03475 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb D4K88_RS03475 IPR004524 Aspartate-tRNA ligase, type 1 D4K88_RS03475 IPR006195 Aminoacyl-tRNA synthetase, class II D4K88_RS03475 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) D4K88_RS03480 IPR011006 CheY-like superfamily D4K88_RS03480 IPR024181 Chemotaxis response regulator CheV D4K88_RS03480 IPR036061 CheW-like domain superfamily D4K88_RS03480 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS03480 IPR002545 CheW-like domain D4K88_RS03485 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 D4K88_RS03485 IPR013840 NAD-dependent DNA ligase, N-terminal D4K88_RS03485 IPR036420 BRCT domain superfamily D4K88_RS03485 IPR001357 BRCT domain D4K88_RS03485 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS03485 IPR013839 NAD-dependent DNA ligase, adenylation D4K88_RS03485 IPR033136 NAD-dependent DNA ligase, conserved site D4K88_RS03485 IPR001679 NAD-dependent DNA ligase D4K88_RS03485 IPR010994 RuvA domain 2-like D4K88_RS03485 IPR004150 NAD-dependent DNA ligase, OB-fold D4K88_RS03485 IPR018239 NAD-dependent DNA ligase, active site D4K88_RS03495 IPR017871 ABC transporter, conserved site D4K88_RS03495 IPR003439 ABC transporter-like D4K88_RS03495 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03495 IPR003593 AAA+ ATPase domain D4K88_RS03520 IPR001036 Acriflavin resistance protein D4K88_RS03520 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains D4K88_RS03535 IPR038071 UROD/MetE-like superfamily D4K88_RS03535 IPR000257 Uroporphyrinogen decarboxylase (URO-D) D4K88_RS03535 IPR006361 Uroporphyrinogen decarboxylase HemE D4K88_RS03550 IPR001029 Flagellin, D0/D1 domain D4K88_RS03550 IPR001492 Flagellin D4K88_RS03550 IPR010810 Flagellin hook, IN motif D4K88_RS03565 IPR000727 Target SNARE coiled-coil homology domain D4K88_RS03565 IPR003660 HAMP domain D4K88_RS03565 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain D4K88_RS03565 IPR004090 Chemotaxis methyl-accepting receptor D4K88_RS03565 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain D4K88_RS03570 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site D4K88_RS03570 IPR004839 Aminotransferase, class I/classII D4K88_RS03570 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS03570 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS03570 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS03575 IPR012338 Beta-lactamase/transpeptidase-like D4K88_RS03575 IPR001264 Glycosyl transferase, family 51 D4K88_RS03575 IPR023346 Lysozyme-like domain superfamily D4K88_RS03575 IPR036950 Penicillin binding protein transglycosylase domain D4K88_RS03575 IPR001460 Penicillin-binding protein, transpeptidase D4K88_RS03605 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS03605 IPR041405 Type III R-M EcoP15I, C-terminal D4K88_RS03605 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS03605 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class D4K88_RS03605 IPR002941 DNA methylase N-4/N-6 D4K88_RS03610 IPR006935 Helicase/UvrB, N-terminal D4K88_RS03610 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03610 IPR014883 VRR-NUC domain D4K88_RS03620 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding D4K88_RS03620 IPR029061 Thiamin diphosphate-binding fold D4K88_RS03625 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II D4K88_RS03625 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II D4K88_RS03625 IPR029061 Thiamin diphosphate-binding fold D4K88_RS03625 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit D4K88_RS03625 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain D4K88_RS03625 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal D4K88_RS03625 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain D4K88_RS03645 IPR007167 Ferrous iron transporter FeoA domain D4K88_RS03645 IPR038157 Ferrous iron transporter, core domain D4K88_RS03645 IPR008988 Transcriptional repressor, C-terminal D4K88_RS03650 IPR000445 Helix-hairpin-helix motif D4K88_RS03650 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal D4K88_RS03650 IPR005759 Endonuclease III D4K88_RS03650 IPR004035 Endonuclease III, iron-sulphur binding site D4K88_RS03650 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif D4K88_RS03650 IPR004036 Endonuclease III-like, conserved site-2 D4K88_RS03650 IPR011257 DNA glycosylase D4K88_RS03650 IPR003265 HhH-GPD domain D4K88_RS03655 IPR007597 CheC-like protein D4K88_RS03655 IPR028976 CheC-like superfamily D4K88_RS03655 IPR012826 Flagellar motor switch FliN D4K88_RS03655 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb D4K88_RS03655 IPR036429 SpoA-like superfamily D4K88_RS03655 IPR001543 Surface presentation of antigen (SpoA) D4K88_RS03670 IPR002195 Dihydroorotase, conserved site D4K88_RS03670 IPR004721 Dihydroorotase homodimeric type D4K88_RS03670 IPR032466 Metal-dependent hydrolase D4K88_RS03690 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D4K88_RS03690 IPR036291 NAD(P)-binding domain superfamily D4K88_RS03690 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site D4K88_RS03690 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D4K88_RS03690 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase D4K88_RS03695 IPR019758 Peptidase S26A, signal peptidase I, conserved site D4K88_RS03695 IPR000223 Peptidase S26A, signal peptidase I D4K88_RS03695 IPR036286 LexA/Signal peptidase-like superfamily D4K88_RS03695 IPR019533 Peptidase S26 D4K88_RS03700 IPR008915 Peptidase M50 D4K88_RS03705 IPR004785 Ribose 5-phosphate isomerase B D4K88_RS03705 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family D4K88_RS03705 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily D4K88_RS03715 IPR000836 Phosphoribosyltransferase domain D4K88_RS03715 IPR029057 Phosphoribosyltransferase-like D4K88_RS03715 IPR005764 Adenine phosphoribosyl transferase D4K88_RS03725 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal D4K88_RS03725 IPR023042 Peptidase M17, leucine aminopeptidase D4K88_RS03725 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal D4K88_RS03725 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B D4K88_RS03730 IPR012675 Beta-grasp domain superfamily D4K88_RS03730 IPR004095 TGS D4K88_RS03730 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 D4K88_RS03730 IPR006073 GTP binding domain D4K88_RS03730 IPR041706 YchF, N-terminal D4K88_RS03730 IPR013029 YchF, C-terminal domain D4K88_RS03730 IPR023192 TGS-like domain superfamily D4K88_RS03730 IPR012676 TGS-like D4K88_RS03730 IPR031167 OBG-type guanine nucleotide-binding (G) domain D4K88_RS03730 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03740 IPR002549 Transmembrane protein TqsA-like D4K88_RS03745 IPR001653 Diaminopimelate epimerase, DapF D4K88_RS03745 IPR018510 Diaminopimelate epimerase, active site D4K88_RS03750 IPR007339 Inner membrane protein RclC-like D4K88_RS03765 IPR001911 Ribosomal protein S21 D4K88_RS03765 IPR038380 Ribosomal protein S21 superfamily D4K88_RS03765 IPR018278 Ribosomal protein S21, conserved site D4K88_RS03770 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase D4K88_RS03770 IPR002347 Short-chain dehydrogenase/reductase SDR D4K88_RS03770 IPR036291 NAD(P)-binding domain superfamily D4K88_RS03770 IPR020904 Short-chain dehydrogenase/reductase, conserved site D4K88_RS03775 IPR006162 Phosphopantetheine attachment site D4K88_RS03775 IPR036736 ACP-like superfamily D4K88_RS03775 IPR003231 Acyl carrier protein (ACP) D4K88_RS03775 IPR020806 Polyketide synthase, phosphopantetheine-binding domain D4K88_RS03775 IPR009081 Phosphopantetheine binding ACP domain D4K88_RS03780 IPR000794 Beta-ketoacyl synthase D4K88_RS03780 IPR018201 Beta-ketoacyl synthase, active site D4K88_RS03780 IPR014031 Beta-ketoacyl synthase, C-terminal D4K88_RS03780 IPR014030 Beta-ketoacyl synthase, N-terminal D4K88_RS03780 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain D4K88_RS03780 IPR016039 Thiolase-like D4K88_RS03780 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 D4K88_RS03785 IPR029045 ClpP/crotonase-like domain superfamily D4K88_RS03785 IPR001095 Acetyl-CoA carboxylase, alpha subunit D4K88_RS03785 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal D4K88_RS03810 IPR029028 Alpha/beta knot methyltransferases D4K88_RS03810 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal D4K88_RS03810 IPR013123 RNA 2-O ribose methyltransferase, substrate binding D4K88_RS03810 IPR001537 tRNA/rRNA methyltransferase, SpoU type D4K88_RS03810 IPR029064 50S ribosomal protein L30e-like D4K88_RS03815 IPR000878 Tetrapyrrole methylase D4K88_RS03815 IPR014777 Tetrapyrrole methylase, subdomain 1 D4K88_RS03815 IPR008189 rRNA small subunit methyltransferase I D4K88_RS03815 IPR035996 Tetrapyrrole methylase superfamily D4K88_RS03815 IPR014776 Tetrapyrrole methylase, subdomain 2 D4K88_RS03815 IPR018063 SAM-dependent methyltransferase RsmI, conserved site D4K88_RS03820 IPR027491 Ribosomal protein L31 type A D4K88_RS03820 IPR002150 Ribosomal protein L31 D4K88_RS03820 IPR034704 L28p-like D4K88_RS03820 IPR042105 Ribosomal protein L31 superfamily D4K88_RS03825 IPR041703 Transcription termination factor Rho, ATP binding domain D4K88_RS03825 IPR011129 Cold shock domain D4K88_RS03825 IPR011112 Rho termination factor, N-terminal D4K88_RS03825 IPR003593 AAA+ ATPase domain D4K88_RS03825 IPR004665 Transcription termination factor Rho D4K88_RS03825 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain D4K88_RS03825 IPR011113 Rho termination factor, RNA-binding domain D4K88_RS03825 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03825 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS03825 IPR036269 Rho termination factor, N-terminal domain superfamily D4K88_RS03830 IPR004391 Glutamate racemase D4K88_RS03830 IPR015942 Asp/Glu/hydantoin racemase D4K88_RS03830 IPR001920 Asp/Glu racemase D4K88_RS03830 IPR033134 Asp/Glu racemase, active site 2 D4K88_RS03830 IPR018187 Asp/Glu racemase, active site 1 D4K88_RS03845 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03845 IPR009019 K homology domain superfamily, prokaryotic type D4K88_RS03845 IPR004044 K Homology domain, type 2 D4K88_RS03845 IPR015946 K homology domain-like, alpha/beta D4K88_RS03845 IPR005662 GTP-binding protein Era D4K88_RS03845 IPR006073 GTP binding domain D4K88_RS03845 IPR005225 Small GTP-binding protein domain D4K88_RS03845 IPR030388 Era-type guanine nucleotide-binding (G) domain D4K88_RS03850 IPR003959 ATPase, AAA-type, core D4K88_RS03850 IPR019489 Clp ATPase, C-terminal D4K88_RS03850 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS03850 IPR004491 Heat shock protein HslU D4K88_RS03850 IPR003593 AAA+ ATPase domain D4K88_RS03855 IPR029055 Nucleophile aminohydrolases, N-terminal D4K88_RS03855 IPR023333 Proteasome B-type subunit D4K88_RS03855 IPR022281 ATP-dependent protease, HslV subunit D4K88_RS03855 IPR001353 Proteasome, subunit alpha/beta D4K88_RS03860 IPR020070 Ribosomal protein L9, N-terminal D4K88_RS03860 IPR000244 Ribosomal protein L9 D4K88_RS03860 IPR009027 Ribosomal protein L9/RNase H1, N-terminal D4K88_RS03860 IPR020594 Ribosomal protein L9, bacteria/chloroplast D4K88_RS03860 IPR020069 Ribosomal protein L9, C-terminal D4K88_RS03860 IPR036791 Ribosomal protein L9, C-terminal domain superfamily D4K88_RS03860 IPR036935 Ribosomal protein L9, N-terminal domain superfamily D4K88_RS03870 IPR004809 Glutamine synthetase type I D4K88_RS03870 IPR027303 Glutamine synthetase, glycine-rich site D4K88_RS03870 IPR008147 Glutamine synthetase, beta-Grasp domain D4K88_RS03870 IPR008146 Glutamine synthetase, catalytic domain D4K88_RS03870 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain D4K88_RS03870 IPR036651 Glutamine synthetase, N-terminal domain superfamily D4K88_RS03880 IPR022663 Dihydrodipicolinate reductase, C-terminal D4K88_RS03880 IPR000846 Dihydrodipicolinate reductase, N-terminal D4K88_RS03880 IPR022664 Dihydrodipicolinate reductase, conserved site D4K88_RS03880 IPR023940 Dihydrodipicolinate reductase D4K88_RS03880 IPR036291 NAD(P)-binding domain superfamily D4K88_RS03885 IPR016164 FAD-linked oxidase-like, C-terminal D4K88_RS03885 IPR036318 FAD-binding, type PCMH-like superfamily D4K88_RS03885 IPR016166 FAD-binding domain, PCMH-type D4K88_RS03885 IPR004490 Glycolate oxidase subunit GlcD D4K88_RS03885 IPR006094 FAD linked oxidase, N-terminal D4K88_RS03885 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 D4K88_RS03885 IPR004113 FAD-linked oxidase, C-terminal D4K88_RS03890 IPR029276 Plasminogen-binding protein PgbA, N-terminal D4K88_RS03890 IPR032737 Plasminogen-binding protein PgbA, C-terminal D4K88_RS03900 IPR011055 Duplicated hybrid motif D4K88_RS03900 IPR023346 Lysozyme-like domain superfamily D4K88_RS03900 IPR016047 Peptidase M23 D4K88_RS03900 IPR010090 Phage tail tape measure protein D4K88_RS03900 IPR000189 Prokaryotic transglycosylase, active site D4K88_RS03900 IPR008258 Transglycosylase SLT domain 1 D4K88_RS03915 IPR001241 DNA topoisomerase, type IIA D4K88_RS03915 IPR011557 DNA gyrase, subunit B D4K88_RS03915 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS03915 IPR003594 Histidine kinase/HSP90-like ATPase D4K88_RS03915 IPR013760 DNA topoisomerase, type IIA-like domain superfamily D4K88_RS03915 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal D4K88_RS03915 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 D4K88_RS03915 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS03915 IPR036890 Histidine kinase/HSP90-like ATPase superfamily D4K88_RS03915 IPR002288 DNA gyrase B subunit, C-terminal D4K88_RS03915 IPR006171 TOPRIM domain D4K88_RS03915 IPR034160 DNA gyrase subunit B, TOPRIM domain D4K88_RS03915 IPR018522 DNA topoisomerase, type IIA, conserved site D4K88_RS03920 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal D4K88_RS03920 IPR001001 DNA polymerase III, beta sliding clamp D4K88_RS03920 IPR022637 DNA polymerase III, beta sliding clamp, central D4K88_RS03920 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal D4K88_RS03925 IPR036541 Phospholipase A1 superfamily D4K88_RS03925 IPR003187 Phospholipase A1 D4K88_RS03930 IPR000175 Sodium:neurotransmitter symporter D4K88_RS03930 IPR037272 Sodium:neurotransmitter symporter superfamily D4K88_RS03935 IPR000175 Sodium:neurotransmitter symporter D4K88_RS03935 IPR037272 Sodium:neurotransmitter symporter superfamily D4K88_RS03940 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site D4K88_RS03940 IPR029069 HotDog domain superfamily D4K88_RS03940 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family D4K88_RS03940 IPR006683 Thioesterase domain D4K88_RS03945 IPR007454 Uncharacterised protein family UPF0250 D4K88_RS03945 IPR027471 YbeD-like domain superfamily D4K88_RS03950 IPR036565 Mur-like, catalytic domain superfamily D4K88_RS03950 IPR004101 Mur ligase, C-terminal D4K88_RS03950 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase D4K88_RS03950 IPR036615 Mur ligase, C-terminal domain superfamily D4K88_RS03950 IPR013221 Mur ligase, central D4K88_RS03955 IPR000715 Glycosyl transferase, family 4 D4K88_RS03955 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase D4K88_RS03955 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site D4K88_RS03965 IPR026569 Ribosomal protein L28/L24 D4K88_RS03965 IPR037147 Ribosomal protein L28/L24 superfamily D4K88_RS03965 IPR034704 L28p-like D4K88_RS03965 IPR001383 Ribosomal protein L28 D4K88_RS04020 IPR018117 DNA methylase, C-5 cytosine-specific, active site D4K88_RS04020 IPR001525 C-5 cytosine methyltransferase D4K88_RS04020 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site D4K88_RS04020 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS04040 IPR035647 EF-G domain III/V-like D4K88_RS04040 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04040 IPR000640 Elongation factor EFG, domain V-like D4K88_RS04040 IPR006298 GTP-binding protein TypA D4K88_RS04040 IPR042116 GTP-binding protein TypA/BipA, C-terminal D4K88_RS04040 IPR004161 Translation elongation factor EFTu-like, domain 2 D4K88_RS04040 IPR031157 Tr-type G domain, conserved site D4K88_RS04040 IPR009000 Translation protein, beta-barrel domain superfamily D4K88_RS04040 IPR000795 Transcription factor, GTP-binding domain D4K88_RS04040 IPR035651 BipA, domain V D4K88_RS04040 IPR005225 Small GTP-binding protein domain D4K88_RS04050 IPR003356 DNA methylase, adenine-specific D4K88_RS04050 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS04050 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS04060 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding D4K88_RS04060 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site D4K88_RS04060 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial D4K88_RS04060 IPR000924 Glutamyl/glutaminyl-tRNA synthetase D4K88_RS04060 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain D4K88_RS04060 IPR033910 Glutamyl-tRNA synthetase D4K88_RS04060 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS04060 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 D4K88_RS04065 IPR003593 AAA+ ATPase domain D4K88_RS04065 IPR013611 Transport-associated OB, type 2 D4K88_RS04065 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit D4K88_RS04065 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04065 IPR008995 Molybdate/tungstate binding, C-terminal D4K88_RS04065 IPR017871 ABC transporter, conserved site D4K88_RS04065 IPR003439 ABC transporter-like D4K88_RS04065 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA D4K88_RS04070 IPR011867 Molybdate ABC transporter, permease protein D4K88_RS04070 IPR035906 MetI-like superfamily D4K88_RS04070 IPR000515 ABC transporter type 1, transmembrane domain MetI-like D4K88_RS04075 IPR005950 Molybdate ABC transporter, substrate-binding protein D4K88_RS04095 IPR038770 Sodium/solute symporter superfamily D4K88_RS04095 IPR036291 NAD(P)-binding domain superfamily D4K88_RS04095 IPR003148 Regulator of K+ conductance, N-terminal D4K88_RS04095 IPR006153 Cation/H+ exchanger D4K88_RS04095 IPR004771 K+/H+ exchanger D4K88_RS04150 IPR036832 Polyphosphate kinase N-terminal domain superfamily D4K88_RS04150 IPR024953 Polyphosphate kinase middle domain D4K88_RS04150 IPR041108 Polyphosphate kinase, C-terminal domain 1 D4K88_RS04150 IPR003414 Polyphosphate kinase D4K88_RS04150 IPR036830 Polyphosphate kinase middle domain superfamily D4K88_RS04150 IPR025200 Polyphosphate kinase C-terminal domain 2 D4K88_RS04150 IPR025198 Polyphosphate kinase N-terminal domain D4K88_RS04155 IPR005719 Dihydroorotate dehydrogenase, class 2 D4K88_RS04155 IPR005720 Dihydroorotate dehydrogenase domain D4K88_RS04155 IPR013785 Aldolase-type TIM barrel D4K88_RS04155 IPR001295 Dihydroorotate dehydrogenase, conserved site D4K88_RS04155 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 D4K88_RS04165 IPR020625 Schiff base-forming aldolase, active site D4K88_RS04165 IPR002220 DapA-like D4K88_RS04165 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA D4K88_RS04165 IPR013785 Aldolase-type TIM barrel D4K88_RS04170 IPR036291 NAD(P)-binding domain superfamily D4K88_RS04170 IPR002347 Short-chain dehydrogenase/reductase SDR D4K88_RS04180 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase D4K88_RS04180 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial D4K88_RS04180 IPR000462 CDP-alcohol phosphatidyltransferase D4K88_RS04185 IPR004840 Amino acid permease, conserved site D4K88_RS04185 IPR004841 Amino acid permease/ SLC12A domain D4K88_RS04190 IPR001940 Peptidase S1C D4K88_RS04190 IPR009003 Peptidase S1, PA clan D4K88_RS04190 IPR011782 Peptidase S1C, Do D4K88_RS04190 IPR036034 PDZ superfamily D4K88_RS04190 IPR041489 PDZ domain 6 D4K88_RS04190 IPR001478 PDZ domain D4K88_RS04195 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site D4K88_RS04195 IPR026596 Bifunctional enzyme IspD/IspF D4K88_RS04195 IPR034683 Cytidylyltransferase IspD/TarI D4K88_RS04195 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site D4K88_RS04195 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase D4K88_RS04195 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily D4K88_RS04195 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS04200 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS04200 IPR011006 CheY-like superfamily D4K88_RS04200 IPR001867 OmpR/PhoB-type DNA-binding domain D4K88_RS04200 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB D4K88_RS04200 IPR039420 Transcriptional regulatory protein WalR-like D4K88_RS04200 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS04210 IPR036397 Ribonuclease H superfamily D4K88_RS04210 IPR029060 PIN-like domain superfamily D4K88_RS04210 IPR012337 Ribonuclease H-like superfamily D4K88_RS04210 IPR008918 Helix-hairpin-helix motif, class 2 D4K88_RS04210 IPR002562 3'-5' exonuclease domain D4K88_RS04210 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal D4K88_RS04210 IPR002421 5'-3' exonuclease, N-terminal D4K88_RS04210 IPR036279 5'-3' exonuclease, C-terminal domain superfamily D4K88_RS04210 IPR019760 DNA-directed DNA polymerase, family A, conserved site D4K88_RS04210 IPR001098 DNA-directed DNA polymerase, family A, palm domain D4K88_RS04210 IPR020045 DNA polymerase I-like, H3TH domain D4K88_RS04210 IPR018320 DNA polymerase 1 D4K88_RS04210 IPR002298 DNA polymerase A D4K88_RS04215 IPR002686 Transposase IS200-like D4K88_RS04215 IPR036515 Transposase IS200-like superfamily D4K88_RS04220 IPR021027 Transposase, putative, helix-turn-helix domain D4K88_RS04220 IPR010095 Transposase IS605, OrfB, C-terminal D4K88_RS04220 IPR001959 Probable transposase, IS891/IS1136/IS1341 D4K88_RS04230 IPR002939 Chaperone DnaJ, C-terminal D4K88_RS04230 IPR001623 DnaJ domain D4K88_RS04230 IPR018253 DnaJ domain, conserved site D4K88_RS04230 IPR008971 HSP40/DnaJ peptide-binding D4K88_RS04230 IPR036869 Chaperone J-domain superfamily D4K88_RS04235 IPR009061 Putative DNA-binding domain superfamily D4K88_RS04235 IPR000551 MerR-type HTH domain D4K88_RS04240 IPR002589 Macro domain D4K88_RS04240 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04240 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal D4K88_RS04240 IPR021886 MgsA AAA+ ATPase C-terminal D4K88_RS04240 IPR032423 AAA C-terminal domain D4K88_RS04240 IPR008824 RuvB-like P-loop domain D4K88_RS04240 IPR003593 AAA+ ATPase domain D4K88_RS04245 IPR002481 Ferric-uptake regulator D4K88_RS04245 IPR036390 Winged helix DNA-binding domain superfamily D4K88_RS04245 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS04260 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb D4K88_RS04260 IPR001543 Surface presentation of antigen (SpoA) D4K88_RS04260 IPR007597 CheC-like protein D4K88_RS04260 IPR036429 SpoA-like superfamily D4K88_RS04260 IPR028976 CheC-like superfamily D4K88_RS04260 IPR012826 Flagellar motor switch FliN D4K88_RS04265 IPR036429 SpoA-like superfamily D4K88_RS04265 IPR001543 Surface presentation of antigen (SpoA) D4K88_RS04265 IPR001689 Flagellar motor switch protein FliM D4K88_RS04265 IPR028976 CheC-like superfamily D4K88_RS04270 IPR028617 RNA polymerase sigma factor FliA D4K88_RS04270 IPR007630 RNA polymerase sigma-70 region 4 D4K88_RS04270 IPR012845 RNA polymerase sigma factor, FliA/WhiG D4K88_RS04270 IPR013325 RNA polymerase sigma factor, region 2 D4K88_RS04270 IPR007624 RNA polymerase sigma-70 region 3 D4K88_RS04270 IPR013324 RNA polymerase sigma factor, region 3/4-like D4K88_RS04270 IPR014284 RNA polymerase sigma-70 like domain D4K88_RS04270 IPR007627 RNA polymerase sigma-70 region 2 D4K88_RS04270 IPR000943 RNA polymerase sigma-70 D4K88_RS04280 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04280 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 D4K88_RS04280 IPR025501 ATP binding protein MinD D4K88_RS04285 IPR020006 Flagellar biosynthesis protein FlhF D4K88_RS04285 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04285 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain D4K88_RS04285 IPR003593 AAA+ ATPase domain D4K88_RS04290 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily D4K88_RS04290 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK D4K88_RS04295 IPR000587 Creatinase, N-terminal D4K88_RS04295 IPR036005 Creatinase/aminopeptidase-like D4K88_RS04295 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal D4K88_RS04295 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site D4K88_RS04295 IPR000994 Peptidase M24 D4K88_RS04300 IPR001874 Dehydroquinase, class II D4K88_RS04300 IPR036441 Dehydroquinase, class II superfamily D4K88_RS04300 IPR018509 Dehydroquinase, class II, conserved site D4K88_RS04310 IPR005290 Ribosomal protein S15, bacterial-type D4K88_RS04310 IPR009068 S15/NS1, RNA-binding D4K88_RS04310 IPR000589 Ribosomal protein S15 D4K88_RS04315 IPR042194 FHIPEP, domain 1 D4K88_RS04315 IPR042193 FHIPEP, domain 3 D4K88_RS04315 IPR042196 FHIPEP, domain 4 D4K88_RS04315 IPR025505 FHIPEP conserved site D4K88_RS04315 IPR006301 Flagellar biosynthesis protein FlhA D4K88_RS04315 IPR001712 Type III secretion system FHIPEP D4K88_RS04320 IPR038763 DHH phosphoesterase superfamily D4K88_RS04325 IPR011006 CheY-like superfamily D4K88_RS04325 IPR001867 OmpR/PhoB-type DNA-binding domain D4K88_RS04325 IPR016032 Signal transduction response regulator, C-terminal effector D4K88_RS04325 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS04325 IPR039420 Transcriptional regulatory protein WalR-like D4K88_RS04325 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS04330 IPR029052 Metallo-dependent phosphatase-like D4K88_RS04330 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type D4K88_RS04340 IPR025110 AMP-binding enzyme, C-terminal domain D4K88_RS04340 IPR042099 AMP-dependent synthetase-like superfamily D4K88_RS04340 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain D4K88_RS04340 IPR011904 Acetate-CoA ligase D4K88_RS04340 IPR020845 AMP-binding, conserved site D4K88_RS04340 IPR000873 AMP-dependent synthetase/ligase D4K88_RS04345 IPR003728 Ribosome maturation factor RimP D4K88_RS04345 IPR035956 RimP, N-terminal domain superfamily D4K88_RS04345 IPR028989 Ribosome maturation factor RimP, N-terminal D4K88_RS04345 IPR028998 Ribosome maturation factor RimP, C-terminal D4K88_RS04350 IPR000238 Ribosome-binding factor A D4K88_RS04350 IPR023799 Ribosome-binding factor A domain superfamily D4K88_RS04350 IPR020053 Ribosome-binding factor A, conserved site D4K88_RS04350 IPR015946 K homology domain-like, alpha/beta D4K88_RS04355 IPR009000 Translation protein, beta-barrel domain superfamily D4K88_RS04355 IPR023115 Translation initiation factor IF- 2, domain 3 D4K88_RS04355 IPR015760 Translation initiation factor IF- 2 D4K88_RS04355 IPR006847 Translation initiation factor IF-2, N-terminal D4K88_RS04355 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04355 IPR000795 Transcription factor, GTP-binding domain D4K88_RS04355 IPR005225 Small GTP-binding protein domain D4K88_RS04355 IPR036925 Translation initiation factor IF-2, domain 3 superfamily D4K88_RS04355 IPR000178 Translation initiation factor aIF-2, bacterial-like D4K88_RS04365 IPR006204 GHMP kinase N-terminal domain D4K88_RS04365 IPR006203 GHMP kinase, ATP-binding, conserved site D4K88_RS04365 IPR000870 Homoserine kinase D4K88_RS04365 IPR036554 GHMP kinase, C-terminal domain superfamily D4K88_RS04365 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS04365 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS04375 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal D4K88_RS04375 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal D4K88_RS04375 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase D4K88_RS04375 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS04380 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily D4K88_RS04380 IPR013033 Septum formation inhibitor MinC D4K88_RS04380 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal D4K88_RS04380 IPR005526 Septum formation inhibitor MinC, C-terminal D4K88_RS04405 IPR003700 Ketopantoate hydroxymethyltransferase D4K88_RS04405 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily D4K88_RS04405 IPR040442 Pyruvate kinase-like domain superfamily D4K88_RS04410 IPR004605 DNA helicase, Holliday junction RuvB-type D4K88_RS04410 IPR008824 RuvB-like P-loop domain D4K88_RS04410 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS04410 IPR036390 Winged helix DNA-binding domain superfamily D4K88_RS04410 IPR003593 AAA+ ATPase domain D4K88_RS04410 IPR008823 RuvB C-terminal winged helix domain D4K88_RS04410 IPR041445 RuvB, AAA lid domain D4K88_RS04410 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04415 IPR018448 Twin-arginine translocation protein TatB D4K88_RS04420 IPR002033 Sec-independent periplasmic protein translocase TatC D4K88_RS04420 IPR019820 Sec-independent periplasmic protein translocase, conserved site D4K88_RS04425 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily D4K88_RS04425 IPR042119 QueA, domain 2 D4K88_RS04425 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA D4K88_RS04425 IPR042118 QueA, domain 1 D4K88_RS04430 IPR003682 rRNA small subunit methyltransferase G D4K88_RS04430 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS04455 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS04455 IPR011006 CheY-like superfamily D4K88_RS04460 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS04460 IPR004498 Ribosomal protein L11 methyltransferase D4K88_RS04465 IPR003959 ATPase, AAA-type, core D4K88_RS04465 IPR003960 ATPase, AAA-type, conserved site D4K88_RS04465 IPR005936 Peptidase, FtsH D4K88_RS04465 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04465 IPR000642 Peptidase M41 D4K88_RS04465 IPR041569 AAA ATPase, AAA+ lid domain D4K88_RS04465 IPR037219 Peptidase M41-like D4K88_RS04465 IPR003593 AAA+ ATPase domain D4K88_RS04475 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase D4K88_RS04475 IPR000462 CDP-alcohol phosphatidyltransferase D4K88_RS04480 IPR006121 Heavy metal-associated domain, HMA D4K88_RS04480 IPR023298 P-type ATPase, transmembrane domain superfamily D4K88_RS04480 IPR023299 P-type ATPase, cytoplasmic domain N D4K88_RS04480 IPR036163 Heavy metal-associated domain superfamily D4K88_RS04480 IPR027256 P-type ATPase, subfamily IB D4K88_RS04480 IPR001757 P-type ATPase D4K88_RS04480 IPR017969 Heavy-metal-associated, conserved site D4K88_RS04480 IPR008250 P-type ATPase, A domain superfamily D4K88_RS04480 IPR023214 HAD superfamily D4K88_RS04480 IPR018303 P-type ATPase, phosphorylation site D4K88_RS04480 IPR036412 HAD-like superfamily D4K88_RS04485 IPR036163 Heavy metal-associated domain superfamily D4K88_RS04485 IPR006121 Heavy metal-associated domain, HMA D4K88_RS04485 IPR017969 Heavy-metal-associated, conserved site D4K88_RS04485 IPR000428 Copper ion binding protein D4K88_RS04485 IPR006122 Heavy metal-associated domain, copper ion-binding D4K88_RS04500 IPR011541 Nickel/cobalt transporter, high-affinity D4K88_RS04500 IPR004688 Transition metal uptake transporter nickel/cobalt D4K88_RS04510 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04510 IPR003959 ATPase, AAA-type, core D4K88_RS04525 IPR003439 ABC transporter-like D4K88_RS04525 IPR017871 ABC transporter, conserved site D4K88_RS04525 IPR011917 ABC transporter, lipid A export, MsbA D4K88_RS04525 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04525 IPR011527 ABC transporter type 1, transmembrane domain D4K88_RS04525 IPR036640 ABC transporter type 1, transmembrane domain superfamily D4K88_RS04525 IPR003593 AAA+ ATPase domain D4K88_RS04525 IPR039421 Type I protein exporter D4K88_RS04535 IPR006130 Aspartate/ornithine carbamoyltransferase D4K88_RS04535 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily D4K88_RS04535 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding D4K88_RS04535 IPR002082 Aspartate carbamoyltransferase D4K88_RS04535 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain D4K88_RS04545 IPR004538 Haemolysin A /rRNA methyltransferase TlyA D4K88_RS04545 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS04545 IPR036986 RNA-binding S4 domain superfamily D4K88_RS04545 IPR002877 Ribosomal RNA methyltransferase FtsJ domain D4K88_RS04545 IPR002942 RNA-binding S4 domain D4K88_RS04550 IPR002606 Riboflavin kinase, bacterial D4K88_RS04550 IPR023465 Riboflavin kinase domain superfamily D4K88_RS04550 IPR015864 FAD synthetase D4K88_RS04550 IPR023468 Riboflavin kinase D4K88_RS04550 IPR004821 Cytidyltransferase-like domain D4K88_RS04550 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic D4K88_RS04550 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS04555 IPR005478 Transketolase, bacterial-like D4K88_RS04555 IPR033247 Transketolase family D4K88_RS04555 IPR020826 Transketolase binding site D4K88_RS04555 IPR029061 Thiamin diphosphate-binding fold D4K88_RS04555 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II D4K88_RS04555 IPR005475 Transketolase-like, pyrimidine-binding domain D4K88_RS04555 IPR033248 Transketolase, C-terminal domain D4K88_RS04555 IPR005474 Transketolase, N-terminal D4K88_RS04565 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS04565 IPR018541 FtsK gamma domain D4K88_RS04565 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04565 IPR036390 Winged helix DNA-binding domain superfamily D4K88_RS04565 IPR002543 FtsK domain D4K88_RS04565 IPR041027 FtsK alpha domain D4K88_RS04575 IPR005828 Major facilitator, sugar transporter-like D4K88_RS04575 IPR036259 MFS transporter superfamily D4K88_RS04575 IPR004736 MFS transporter, metabolite:H symporter D4K88_RS04575 IPR005829 Sugar transporter, conserved site D4K88_RS04575 IPR020846 Major facilitator superfamily domain D4K88_RS04580 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like D4K88_RS04580 IPR012834 Flagellar basal-body rod FlgG D4K88_RS04580 IPR020013 Flagellar hook-basal body protein, FlgE/F/G D4K88_RS04580 IPR001444 Flagellar basal body rod protein, N-terminal D4K88_RS04580 IPR019776 Flagellar basal body rod protein, conserved site D4K88_RS04580 IPR010930 Flagellar basal-body/hook protein, C-terminal domain D4K88_RS04605 IPR001959 Probable transposase, IS891/IS1136/IS1341 D4K88_RS04605 IPR021027 Transposase, putative, helix-turn-helix domain D4K88_RS04605 IPR010095 Transposase IS605, OrfB, C-terminal D4K88_RS04610 IPR002686 Transposase IS200-like D4K88_RS04610 IPR036515 Transposase IS200-like superfamily D4K88_RS04615 IPR040239 Beta-lactamase HcpB-like D4K88_RS04615 IPR006597 Sel1-like repeat D4K88_RS04615 IPR011990 Tetratricopeptide-like helical domain superfamily D4K88_RS04615 IPR019734 Tetratricopeptide repeat D4K88_RS04620 IPR000887 KDPG/KHG aldolase D4K88_RS04620 IPR013785 Aldolase-type TIM barrel D4K88_RS04620 IPR031337 KDPG/KHG aldolase, active site 1 D4K88_RS04620 IPR031338 KDPG/KHG aldolase, active site 2 D4K88_RS04625 IPR004786 6-phosphogluconate dehydratase D4K88_RS04625 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase D4K88_RS04625 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site D4K88_RS04625 IPR037237 IlvD/EDD, N-terminal domain D4K88_RS04625 IPR042096 Dihydroxy-acid dehydratase, C-terminal D4K88_RS04630 IPR001282 Glucose-6-phosphate dehydrogenase D4K88_RS04630 IPR019796 Glucose-6-phosphate dehydrogenase, active site D4K88_RS04630 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal D4K88_RS04630 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding D4K88_RS04630 IPR036291 NAD(P)-binding domain superfamily D4K88_RS04635 IPR005900 6-phosphogluconolactonase, DevB-type D4K88_RS04635 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase D4K88_RS04635 IPR037171 NagB/RpiA transferase-like D4K88_RS04635 IPR039104 6-Phosphogluconolactonase D4K88_RS04640 IPR003836 Glucokinase D4K88_RS04645 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site D4K88_RS04645 IPR036291 NAD(P)-binding domain superfamily D4K88_RS04645 IPR013149 Alcohol dehydrogenase, C-terminal D4K88_RS04645 IPR020843 Polyketide synthase, enoylreductase domain D4K88_RS04645 IPR011032 GroES-like superfamily D4K88_RS04645 IPR013154 Alcohol dehydrogenase, N-terminal D4K88_RS04665 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain D4K88_RS04665 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain D4K88_RS04665 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate D4K88_RS04675 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II D4K88_RS04675 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II D4K88_RS04675 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal D4K88_RS04675 IPR029061 Thiamin diphosphate-binding fold D4K88_RS04680 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding D4K88_RS04680 IPR029061 Thiamin diphosphate-binding fold D4K88_RS04685 IPR008948 L-Aspartase-like D4K88_RS04685 IPR000362 Fumarate lyase family D4K88_RS04685 IPR020557 Fumarate lyase, conserved site D4K88_RS04685 IPR022761 Fumarate lyase, N-terminal D4K88_RS04685 IPR019468 Adenylosuccinate lyase C-terminal D4K88_RS04685 IPR004769 Adenylosuccinate lyase D4K88_RS04685 IPR024083 Fumarase/histidase, N-terminal D4K88_RS04695 IPR006935 Helicase/UvrB, N-terminal D4K88_RS04695 IPR014001 Helicase superfamily 1/2, ATP-binding domain D4K88_RS04695 IPR001650 Helicase, C-terminal D4K88_RS04695 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04695 IPR001943 UVR domain D4K88_RS04695 IPR024759 UvrB, YAD/RRR-motif-containing domain D4K88_RS04695 IPR041471 UvrB, interaction domain D4K88_RS04695 IPR036876 UVR domain superfamily D4K88_RS04695 IPR004807 UvrABC system, subunit B D4K88_RS04715 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial D4K88_RS04715 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 D4K88_RS04715 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS04715 IPR000085 Bacterial DNA recombination protein RuvA D4K88_RS04715 IPR010994 RuvA domain 2-like D4K88_RS04715 IPR011114 Holliday junction DNA helicase RuvA, C-terminal D4K88_RS04715 IPR036267 RuvA, C-terminal domain superfamily D4K88_RS04725 IPR004268 Peptidoglycan biosynthesis protein MurJ D4K88_RS04730 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase D4K88_RS04730 IPR015803 Cysteine-tRNA ligase D4K88_RS04730 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR D4K88_RS04730 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS04730 IPR032678 tRNA synthetases class I, catalytic domain D4K88_RS04730 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding D4K88_RS04735 IPR003842 Vacuolating cytotoxin D4K88_RS04735 IPR036709 Autotransporter beta-domain superfamily D4K88_RS04735 IPR005546 Autotransporter beta-domain D4K88_RS04740 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04740 IPR017871 ABC transporter, conserved site D4K88_RS04740 IPR003439 ABC transporter-like D4K88_RS04740 IPR003593 AAA+ ATPase domain D4K88_RS04745 IPR037294 ABC transporter, BtuC-like D4K88_RS04745 IPR000522 ABC transporter, permease protein, BtuC-like D4K88_RS04750 IPR020904 Short-chain dehydrogenase/reductase, conserved site D4K88_RS04750 IPR002347 Short-chain dehydrogenase/reductase SDR D4K88_RS04750 IPR036291 NAD(P)-binding domain superfamily D4K88_RS04755 IPR006683 Thioesterase domain D4K88_RS04755 IPR029069 HotDog domain superfamily D4K88_RS04755 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain D4K88_RS04755 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase D4K88_RS04790 IPR042243 HypD, domain 2 D4K88_RS04790 IPR002780 Hydrogenase formation HypD protein D4K88_RS04790 IPR042244 HypD, domain 1 D4K88_RS04795 IPR001109 Hydrogenase expression/formation protein, HupF/HypC D4K88_RS04795 IPR019812 Hydrogenase assembly chaperone, conserved site D4K88_RS04795 IPR037254 HupF/HypC superfamily D4K88_RS04800 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04800 IPR004392 Hydrogenase maturation factor HypB D4K88_RS04800 IPR003495 CobW/HypB/UreG, nucleotide-binding domain D4K88_RS04820 IPR000890 Aliphatic acid kinase, short-chain D4K88_RS04820 IPR023865 Aliphatic acid kinase, short-chain, conserved site D4K88_RS04820 IPR004372 Acetate/propionate kinase D4K88_RS04835 IPR005648 Flagellar hook capping protein D4K88_RS04835 IPR025963 FlgD Tudor-like domain D4K88_RS04835 IPR025965 FlgD Ig-like domain D4K88_RS04840 IPR019776 Flagellar basal body rod protein, conserved site D4K88_RS04840 IPR001444 Flagellar basal body rod protein, N-terminal D4K88_RS04840 IPR037058 Flagellar hook protein FlgE superfamily D4K88_RS04840 IPR011491 Flagellar hook protein FlgE D4K88_RS04840 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like D4K88_RS04840 IPR010930 Flagellar basal-body/hook protein, C-terminal domain D4K88_RS04840 IPR019776 Flagellar basal body rod protein, conserved site D4K88_RS04840 IPR020013 Flagellar hook-basal body protein, FlgE/F/G D4K88_RS04840 IPR037058 Flagellar hook protein FlgE superfamily D4K88_RS04840 IPR011491 Flagellar hook protein FlgE D4K88_RS04840 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like D4K88_RS04840 IPR010930 Flagellar basal-body/hook protein, C-terminal domain D4K88_RS04840 IPR020013 Flagellar hook-basal body protein, FlgE/F/G D4K88_RS04840 IPR001444 Flagellar basal body rod protein, N-terminal D4K88_RS04850 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS04850 IPR011639 Restriction modification methylase Eco57I D4K88_RS04850 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS04850 IPR003356 DNA methylase, adenine-specific D4K88_RS04855 IPR000212 DNA helicase, UvrD/REP type D4K88_RS04855 IPR034739 UvrD/AddA helicase, N-terminal D4K88_RS04855 IPR014016 UvrD-like helicase, ATP-binding domain D4K88_RS04855 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS04855 IPR014017 UvrD-like DNA helicase, C-terminal D4K88_RS04855 IPR013986 DExx box DNA helicase domain superfamily D4K88_RS04890 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain D4K88_RS04890 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain D4K88_RS04890 IPR011607 Methylglyoxal synthase-like domain D4K88_RS04890 IPR036914 Methylglyoxal synthase-like domain superfamily D4K88_RS04890 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain D4K88_RS04890 IPR016185 Pre-ATP-grasp domain superfamily D4K88_RS04890 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily D4K88_RS04890 IPR011761 ATP-grasp fold D4K88_RS04890 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain D4K88_RS04890 IPR006275 Carbamoyl-phosphate synthase, large subunit D4K88_RS04895 IPR006214 Bax inhibitor 1-related D4K88_RS04900 IPR036291 NAD(P)-binding domain superfamily D4K88_RS04900 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I D4K88_RS04900 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain D4K88_RS04900 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain D4K88_RS04900 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family D4K88_RS04900 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site D4K88_RS04905 IPR005546 Autotransporter beta-domain D4K88_RS04905 IPR003842 Vacuolating cytotoxin D4K88_RS04905 IPR036709 Autotransporter beta-domain superfamily D4K88_RS04915 IPR004370 4-oxalocrotonate tautomerase D4K88_RS04915 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type D4K88_RS04915 IPR014347 Tautomerase/MIF superfamily D4K88_RS04920 IPR023627 Recombination protein RecR D4K88_RS04920 IPR023628 Recombination protein RecR, C4-type zinc finger D4K88_RS04920 IPR015967 Recombination protein RecR, conserved site D4K88_RS04920 IPR006171 TOPRIM domain D4K88_RS04920 IPR034137 RecR, TOPRIM domain D4K88_RS04920 IPR000093 DNA recombination protein RecR D4K88_RS04925 IPR020119 Pseudouridine synthase TruD, conserved site D4K88_RS04925 IPR020103 Pseudouridine synthase, catalytic domain superfamily D4K88_RS04925 IPR001656 Pseudouridine synthase, TruD D4K88_RS04925 IPR011760 Pseudouridine synthase, TruD, insertion domain D4K88_RS04930 IPR022919 Peptidase M48, protease HtpX, putative D4K88_RS04930 IPR001915 Peptidase M48 D4K88_RS04935 IPR018234 GTP cyclohydrolase I, conserved site D4K88_RS04935 IPR001474 GTP cyclohydrolase I D4K88_RS04935 IPR020602 GTP cyclohydrolase I domain D4K88_RS04940 IPR033749 Polyprenyl synthetase, conserved site D4K88_RS04940 IPR000092 Polyprenyl synthetase D4K88_RS04940 IPR008949 Isoprenoid synthase domain superfamily D4K88_RS04945 IPR036523 SurE-like phosphatase/nucleotidase superfamily D4K88_RS04945 IPR002828 Survival protein SurE-like phosphatase/nucleotidase D4K88_RS04945 IPR030048 Survival protein SurE D4K88_RS04955 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily D4K88_RS04955 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family D4K88_RS04960 IPR024924 7-carboxy-7-deazaguanine synthase-like D4K88_RS04960 IPR013785 Aldolase-type TIM barrel D4K88_RS04975 IPR005828 Major facilitator, sugar transporter-like D4K88_RS04975 IPR020846 Major facilitator superfamily domain D4K88_RS04975 IPR036259 MFS transporter superfamily D4K88_RS04975 IPR004736 MFS transporter, metabolite:H symporter D4K88_RS04975 IPR005829 Sugar transporter, conserved site D4K88_RS04990 IPR000515 ABC transporter type 1, transmembrane domain MetI-like D4K88_RS04990 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain D4K88_RS04990 IPR035906 MetI-like superfamily D4K88_RS04995 IPR018313 Solute-binding protein family 3, conserved site D4K88_RS04995 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF D4K88_RS05000 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal D4K88_RS05000 IPR001608 Alanine racemase, N-terminal D4K88_RS05000 IPR011079 Alanine racemase, C-terminal D4K88_RS05000 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site D4K88_RS05000 IPR029066 PLP-binding barrel D4K88_RS05000 IPR000821 Alanine racemase D4K88_RS05005 IPR001463 Sodium:alanine symporter D4K88_RS05010 IPR006076 FAD dependent oxidoreductase D4K88_RS05010 IPR036188 FAD/NAD(P)-binding domain superfamily D4K88_RS05015 IPR006175 YjgF/YER057c/UK114 family D4K88_RS05015 IPR035959 RutC-like superfamily D4K88_RS05015 IPR019897 RidA, conserved site D4K88_RS05015 IPR006056 RidA family D4K88_RS05040 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal D4K88_RS05060 IPR029028 Alpha/beta knot methyltransferases D4K88_RS05060 IPR003742 RNA methyltransferase RlmH D4K88_RS05060 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal D4K88_RS05065 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit D4K88_RS05065 IPR029045 ClpP/crotonase-like domain superfamily D4K88_RS05065 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal D4K88_RS05065 IPR041010 Acetyl-coA carboxylase zinc finger domain D4K88_RS05065 IPR034733 Acetyl-CoA carboxylase D4K88_RS05075 IPR001453 MoaB/Mog domain D4K88_RS05075 IPR008135 Competence-induced protein CinA D4K88_RS05075 IPR041424 CinA, KH domain D4K88_RS05075 IPR008136 CinA, C-terminal D4K88_RS05075 IPR036425 MoaB/Mog-like domain superfamily D4K88_RS05075 IPR036653 CinA-like, C-terminal D4K88_RS05090 IPR036515 Transposase IS200-like superfamily D4K88_RS05090 IPR002686 Transposase IS200-like D4K88_RS05095 IPR001959 Probable transposase, IS891/IS1136/IS1341 D4K88_RS05095 IPR010095 Transposase IS605, OrfB, C-terminal D4K88_RS05095 IPR021027 Transposase, putative, helix-turn-helix domain D4K88_RS05100 IPR033878 Nitroreductase NfsB-like D4K88_RS05100 IPR029479 Nitroreductase D4K88_RS05100 IPR000415 Nitroreductase-like D4K88_RS05105 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt D4K88_RS05110 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site D4K88_RS05110 IPR006145 Pseudouridine synthase, RsuA/RluA D4K88_RS05110 IPR002942 RNA-binding S4 domain D4K88_RS05110 IPR020103 Pseudouridine synthase, catalytic domain superfamily D4K88_RS05115 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily D4K88_RS05115 IPR039901 3-deoxy-D-manno-octulosonic acid transferase D4K88_RS05115 IPR001296 Glycosyl transferase, family 1 D4K88_RS05115 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal D4K88_RS05125 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 D4K88_RS05125 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily D4K88_RS05130 IPR002310 Glycine-tRNA ligase, alpha subunit D4K88_RS05130 IPR006194 Glycine-tRNA synthetase, heterodimeric D4K88_RS05135 IPR013328 6-phosphogluconate dehydrogenase, domain 2 D4K88_RS05135 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent D4K88_RS05135 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal D4K88_RS05135 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal D4K88_RS05135 IPR036291 NAD(P)-binding domain superfamily D4K88_RS05135 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily D4K88_RS05160 IPR016368 Virulence-associated protein D D4K88_RS05160 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 D4K88_RS05170 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains D4K88_RS05170 IPR001036 Acriflavin resistance protein D4K88_RS05170 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA D4K88_RS05185 IPR015944 Glycine-tRNA ligase, beta subunit D4K88_RS05185 IPR006194 Glycine-tRNA synthetase, heterodimeric D4K88_RS05195 IPR017850 Alkaline-phosphatase-like, core domain superfamily D4K88_RS05195 IPR011258 BPG-independent PGAM, N-terminal D4K88_RS05195 IPR006124 Metalloenzyme D4K88_RS05195 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily D4K88_RS05195 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent D4K88_RS05200 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C D4K88_RS05200 IPR003837 Glu-tRNAGln amidotransferase C subunit D4K88_RS05205 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA D4K88_RS05205 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS05205 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS05205 IPR005814 Aminotransferase class-III D4K88_RS05205 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS05215 IPR020823 Cell division protein FtsA D4K88_RS05215 IPR003494 SHS2 domain inserted in FtsA D4K88_RS05220 IPR024757 Cell division protein FtsZ, C-terminal D4K88_RS05220 IPR000158 Cell division protein FtsZ D4K88_RS05220 IPR036525 Tubulin/FtsZ, GTPase domain superfamily D4K88_RS05220 IPR008280 Tubulin/FtsZ, C-terminal D4K88_RS05220 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain D4K88_RS05220 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily D4K88_RS05220 IPR003008 Tubulin/FtsZ, GTPase domain D4K88_RS05220 IPR020805 Cell division protein FtsZ, conserved site D4K88_RS05235 IPR025824 OB-fold nucleic acid binding domain D4K88_RS05235 IPR020579 Exonuclease VII, large subunit, C-terminal D4K88_RS05235 IPR003753 Exonuclease VII, large subunit D4K88_RS05260 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 D4K88_RS05260 IPR023408 Mechanosensitive ion channel MscS domain superfamily D4K88_RS05260 IPR011066 Mechanosensitive ion channel MscS, C-terminal D4K88_RS05260 IPR010920 LSM domain superfamily D4K88_RS05260 IPR006685 Mechanosensitive ion channel MscS D4K88_RS05375 IPR029066 PLP-binding barrel D4K88_RS05375 IPR000183 Ornithine/DAP/Arg decarboxylase D4K88_RS05375 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site D4K88_RS05375 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal D4K88_RS05375 IPR002985 Arginine decarboxylase D4K88_RS05375 IPR041128 Arginine decarboxylase, C-terminal helical D4K88_RS05375 IPR040634 Arginine decarboxylase, helical bundle domain D4K88_RS05375 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal D4K88_RS05390 IPR027555 tRNA (mo5U34)-methyltransferase-like D4K88_RS05390 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS05390 IPR010017 tRNA U34 carboxymethyltransferase D4K88_RS05400 IPR023457 Methionine-tRNA synthetase, type 2 D4K88_RS05400 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS05400 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS05400 IPR033911 Methioninyl-tRNA synthetase core domain D4K88_RS05400 IPR015413 Methionyl/Leucyl tRNA synthetase D4K88_RS05400 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding D4K88_RS05400 IPR014758 Methionyl-tRNA synthetase D4K88_RS05400 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal D4K88_RS05400 IPR002300 Aminoacyl-tRNA synthetase, class Ia D4K88_RS05400 IPR002547 tRNA-binding domain D4K88_RS05405 IPR003333 Mycolic acid cyclopropane synthase D4K88_RS05405 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS05410 IPR010920 LSM domain superfamily D4K88_RS05410 IPR006685 Mechanosensitive ion channel MscS D4K88_RS05410 IPR011066 Mechanosensitive ion channel MscS, C-terminal D4K88_RS05410 IPR006686 Mechanosensitive ion channel MscS, conserved site D4K88_RS05410 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 D4K88_RS05410 IPR023408 Mechanosensitive ion channel MscS domain superfamily D4K88_RS05440 IPR001674 GMP synthase, C-terminal D4K88_RS05440 IPR029062 Class I glutamine amidotransferase-like D4K88_RS05440 IPR017926 Glutamine amidotransferase D4K88_RS05440 IPR004739 GMP synthase, glutamine amidotransferase D4K88_RS05440 IPR025777 GMP synthetase ATP pyrophosphatase domain D4K88_RS05440 IPR022955 GMP synthase D4K88_RS05440 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS05440 IPR022310 NAD/GMP synthase D4K88_RS05450 IPR041460 Molybdopterin oxidoreductase, N-terminal D4K88_RS05450 IPR006311 Twin-arginine translocation pathway, signal sequence D4K88_RS05450 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site D4K88_RS05450 IPR041954 Trimethylamine-N-oxide reductase-like, molybdopterin-binding domain D4K88_RS05450 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase D4K88_RS05450 IPR006656 Molybdopterin oxidoreductase D4K88_RS05450 IPR006657 Molybdopterin dinucleotide-binding domain D4K88_RS05450 IPR009010 Aspartate decarboxylase-like domain superfamily D4K88_RS05460 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 D4K88_RS05460 IPR020581 Glycine cleavage system P protein D4K88_RS05460 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS05460 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS05460 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS05465 IPR011146 HIT-like domain D4K88_RS05465 IPR001310 Histidine triad (HIT) protein D4K88_RS05465 IPR019808 Histidine triad, conserved site D4K88_RS05465 IPR036265 HIT-like superfamily D4K88_RS05470 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm D4K88_RS05470 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal D4K88_RS05470 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial D4K88_RS05470 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit D4K88_RS05470 IPR002319 Phenylalanyl-tRNA synthetase D4K88_RS05470 IPR006195 Aminoacyl-tRNA synthetase, class II D4K88_RS05475 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily D4K88_RS05475 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS05475 IPR005147 tRNA synthetase, B5-domain D4K88_RS05475 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit D4K88_RS05475 IPR005121 Ferrodoxin-fold anticodon-binding domain D4K88_RS05475 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain D4K88_RS05475 IPR002547 tRNA-binding domain D4K88_RS05475 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain D4K88_RS05475 IPR009061 Putative DNA-binding domain superfamily D4K88_RS05480 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta D4K88_RS05480 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site D4K88_RS05480 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase D4K88_RS05480 IPR036968 Enolpyruvate transferase domain superfamily D4K88_RS05480 IPR001986 Enolpyruvate transferase domain D4K88_RS05485 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase D4K88_RS05490 IPR000110 Ribosomal protein S1 D4K88_RS05490 IPR003029 S1 domain D4K88_RS05490 IPR022967 RNA-binding domain, S1 D4K88_RS05490 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS05500 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D4K88_RS05500 IPR006236 D-3-phosphoglycerate dehydrogenase D4K88_RS05500 IPR036291 NAD(P)-binding domain superfamily D4K88_RS05500 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain D4K88_RS05500 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 D4K88_RS05500 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site D4K88_RS05500 IPR002912 ACT domain D4K88_RS05500 IPR029009 Allosteric substrate binding domain superfamily D4K88_RS05505 IPR022390 4-hydroxybenzoate decarboxylase subunit C D4K88_RS05505 IPR002830 UbiD decarboxylyase family D4K88_RS05510 IPR011078 Pyridoxal phosphate homeostasis protein D4K88_RS05510 IPR029066 PLP-binding barrel D4K88_RS05510 IPR001608 Alanine racemase, N-terminal D4K88_RS05520 IPR036061 CheW-like domain superfamily D4K88_RS05520 IPR024181 Chemotaxis response regulator CheV D4K88_RS05520 IPR002545 CheW-like domain D4K88_RS05520 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS05520 IPR011006 CheY-like superfamily D4K88_RS05525 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily D4K88_RS05525 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS05525 IPR036890 Histidine kinase/HSP90-like ATPase superfamily D4K88_RS05525 IPR003594 Histidine kinase/HSP90-like ATPase D4K88_RS05525 IPR036061 CheW-like domain superfamily D4K88_RS05525 IPR004358 Signal transduction histidine kinase-related protein, C-terminal D4K88_RS05525 IPR036641 HPT domain superfamily D4K88_RS05525 IPR005467 Histidine kinase domain D4K88_RS05525 IPR011006 CheY-like superfamily D4K88_RS05525 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain D4K88_RS05525 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily D4K88_RS05525 IPR002545 CheW-like domain D4K88_RS05525 IPR004105 Histidine kinase CheA-like, homodimeric domain D4K88_RS05530 IPR039315 Chemotaxis protein CheW D4K88_RS05530 IPR002545 CheW-like domain D4K88_RS05530 IPR036061 CheW-like domain superfamily D4K88_RS05535 IPR013766 Thioredoxin domain D4K88_RS05535 IPR018219 Thiol peroxidase conserved site D4K88_RS05535 IPR013740 Redoxin D4K88_RS05535 IPR036249 Thioredoxin-like superfamily D4K88_RS05535 IPR002065 Thiol peroxidase Tpx D4K88_RS05540 IPR001189 Manganese/iron superoxide dismutase D4K88_RS05540 IPR019833 Manganese/iron superoxide dismutase, binding site D4K88_RS05540 IPR019832 Manganese/iron superoxide dismutase, C-terminal D4K88_RS05540 IPR019831 Manganese/iron superoxide dismutase, N-terminal D4K88_RS05540 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily D4K88_RS05540 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily D4K88_RS05545 IPR005271 Carboxy-S-adenosyl-L-methionine synthase D4K88_RS05545 IPR041698 Methyltransferase domain 25 D4K88_RS05545 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS05550 IPR001650 Helicase, C-terminal D4K88_RS05550 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain D4K88_RS05550 IPR011545 DEAD/DEAH box helicase domain D4K88_RS05550 IPR014001 Helicase superfamily 1/2, ATP-binding domain D4K88_RS05550 IPR005259 Primosomal protein N' D4K88_RS05550 IPR041236 Primosomal protein N, C-terminal domain D4K88_RS05550 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05575 IPR001915 Peptidase M48 D4K88_RS05575 IPR022919 Peptidase M48, protease HtpX, putative D4K88_RS05580 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS05580 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific D4K88_RS05580 IPR004556 Methyltransferase HemK-like D4K88_RS05580 IPR040758 Release factor glutamine methyltransferase, N-terminal domain D4K88_RS05580 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS05580 IPR007848 Methyltransferase small domain D4K88_RS05585 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase D4K88_RS05585 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain D4K88_RS05585 IPR033524 Leu/Phe/Val dehydrogenases active site D4K88_RS05585 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal D4K88_RS05585 IPR033922 NAD(P) binding domain of glutamate dehydrogenase D4K88_RS05585 IPR014362 Glutamate dehydrogenase D4K88_RS05585 IPR036291 NAD(P)-binding domain superfamily D4K88_RS05590 IPR038577 GT10-like superfamily D4K88_RS05590 IPR041058 Alpha-(1,3)-fucosyltransferase FucT, N-terminal D4K88_RS05590 IPR016646 Alpha-(1, 3)-fucosyltransferase/alpha-(1, 4)-fucosyltransferase, Helicobacter D4K88_RS05590 IPR001503 Glycosyl transferase family 10 D4K88_RS05595 IPR002541 Cytochrome c assembly protein D4K88_RS05595 IPR007816 ResB-like domain D4K88_RS05605 IPR033644 Ferrochelatase, C-terminal D4K88_RS05605 IPR001015 Ferrochelatase D4K88_RS05605 IPR019772 Ferrochelatase, active site D4K88_RS05605 IPR033659 Ferrochelatase, N-terminal D4K88_RS05615 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal D4K88_RS05615 IPR006700 Ribosomal RNA small subunit methyltransferase E D4K88_RS05615 IPR029028 Alpha/beta knot methyltransferases D4K88_RS05625 IPR036157 dUTPase-like superfamily D4K88_RS05625 IPR011962 dCTP deaminase D4K88_RS05625 IPR029054 dUTPase-like D4K88_RS05625 IPR033704 dUTPase, trimeric D4K88_RS05630 IPR001249 Acetyl-CoA biotin carboxyl carrier D4K88_RS05630 IPR001882 Biotin-binding site D4K88_RS05630 IPR000089 Biotin/lipoyl attachment D4K88_RS05630 IPR011053 Single hybrid motif D4K88_RS05635 IPR005482 Biotin carboxylase, C-terminal D4K88_RS05635 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain D4K88_RS05635 IPR005481 Biotin carboxylase-like, N-terminal domain D4K88_RS05635 IPR011054 Rudiment single hybrid motif D4K88_RS05635 IPR011761 ATP-grasp fold D4K88_RS05635 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase D4K88_RS05635 IPR011764 Biotin carboxylation domain D4K88_RS05635 IPR016185 Pre-ATP-grasp domain superfamily D4K88_RS05655 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase D4K88_RS05655 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS05655 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS05655 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS05655 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase D4K88_RS05665 IPR000358 Ribonucleotide reductase small subunit family D4K88_RS05665 IPR033909 Ribonucleotide reductase small subunit D4K88_RS05665 IPR012348 Ribonucleotide reductase-like D4K88_RS05665 IPR009078 Ferritin-like superfamily D4K88_RS05665 IPR030475 Ribonucleotide reductase small subunit, acitve site D4K88_RS05670 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase D4K88_RS05670 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS05680 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain D4K88_RS05680 IPR020103 Pseudouridine synthase, catalytic domain superfamily D4K88_RS05680 IPR001406 Pseudouridine synthase I, TruA D4K88_RS05680 IPR020095 Pseudouridine synthase I, TruA, C-terminal D4K88_RS05685 IPR005886 UDP-glucose 4-epimerase D4K88_RS05685 IPR036291 NAD(P)-binding domain superfamily D4K88_RS05685 IPR001509 NAD-dependent epimerase/dehydratase D4K88_RS05705 IPR020904 Short-chain dehydrogenase/reductase, conserved site D4K88_RS05705 IPR036291 NAD(P)-binding domain superfamily D4K88_RS05705 IPR002347 Short-chain dehydrogenase/reductase SDR D4K88_RS05715 IPR035654 Elongation factor 4, domain IV D4K88_RS05715 IPR009000 Translation protein, beta-barrel domain superfamily D4K88_RS05715 IPR000795 Transcription factor, GTP-binding domain D4K88_RS05715 IPR005225 Small GTP-binding protein domain D4K88_RS05715 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05715 IPR013842 GTP-binding protein LepA, C-terminal D4K88_RS05715 IPR004161 Translation elongation factor EFTu-like, domain 2 D4K88_RS05715 IPR031157 Tr-type G domain, conserved site D4K88_RS05715 IPR000640 Elongation factor EFG, domain V-like D4K88_RS05715 IPR035647 EF-G domain III/V-like D4K88_RS05715 IPR006297 Elongation factor 4 D4K88_RS05715 IPR038363 LepA, C-terminal domain superfamily D4K88_RS05720 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II D4K88_RS05720 IPR029061 Thiamin diphosphate-binding fold D4K88_RS05720 IPR033248 Transketolase, C-terminal domain D4K88_RS05720 IPR020826 Transketolase binding site D4K88_RS05720 IPR005474 Transketolase, N-terminal D4K88_RS05720 IPR005477 Deoxyxylulose-5-phosphate synthase D4K88_RS05720 IPR005475 Transketolase-like, pyrimidine-binding domain D4K88_RS05730 IPR032779 Flagellar motor switch protein FliG, middle domain D4K88_RS05730 IPR011002 Flagellar motor switch protein FliG, alpha-helical D4K88_RS05730 IPR023087 Flagellar motor switch protein FliG, C-terminal D4K88_RS05730 IPR000090 Flagellar motor switch protein FliG D4K88_RS05730 IPR028263 Flagellar motor switch protein FliG, N-terminal domain D4K88_RS05735 IPR000067 Flagellar M-ring protein FliF D4K88_RS05735 IPR013556 Flagellar M-ring C-terminal D4K88_RS05735 IPR006182 Secretory protein YscJ/FliF D4K88_RS05745 IPR033828 CTP synthase GATase domain D4K88_RS05745 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05745 IPR017456 CTP synthase, N-terminal D4K88_RS05745 IPR004468 CTP synthase D4K88_RS05745 IPR029062 Class I glutamine amidotransferase-like D4K88_RS05745 IPR017926 Glutamine amidotransferase D4K88_RS05750 IPR001667 DDH domain D4K88_RS05750 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal D4K88_RS05750 IPR038763 DHH phosphoesterase superfamily D4K88_RS05750 IPR041122 RecJ, OB domain D4K88_RS05750 IPR004610 Bacterial RecJ exonuclease D4K88_RS05750 IPR003156 DHHA1 domain D4K88_RS05755 IPR020103 Pseudouridine synthase, catalytic domain superfamily D4K88_RS05755 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site D4K88_RS05755 IPR006145 Pseudouridine synthase, RsuA/RluA D4K88_RS05805 IPR006597 Sel1-like repeat D4K88_RS05805 IPR011990 Tetratricopeptide-like helical domain superfamily D4K88_RS05805 IPR040239 Beta-lactamase HcpB-like D4K88_RS05810 IPR037027 YqgF/RNase H-like domain superfamily D4K88_RS05810 IPR005227 Putative pre-16S rRNA nuclease D4K88_RS05810 IPR012337 Ribonuclease H-like superfamily D4K88_RS05810 IPR006641 YqgF/RNase H-like domain D4K88_RS05815 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS05815 IPR010994 RuvA domain 2-like D4K88_RS05815 IPR041614 DprA, winged helix domain D4K88_RS05815 IPR003488 DNA recombination-mediator protein A D4K88_RS05820 IPR036707 Cell division topological specificity factor MinE superfamily D4K88_RS05820 IPR005527 Cell division topological specificity factor MinE D4K88_RS05825 IPR010223 ATP binding protein MinD, bacterial-type D4K88_RS05825 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05825 IPR025501 ATP binding protein MinD D4K88_RS05825 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain D4K88_RS05830 IPR013116 Ketol-acid reductoisomerase, N-terminal D4K88_RS05830 IPR014359 Ketol-acid reductoisomerase, prokaryotic D4K88_RS05830 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily D4K88_RS05830 IPR013023 Ketol-acid reductoisomerase D4K88_RS05830 IPR036291 NAD(P)-binding domain superfamily D4K88_RS05830 IPR000506 Ketol-acid reductoisomerase, C-terminal D4K88_RS05840 IPR022926 NH(3)-dependent NAD(+) synthetase D4K88_RS05840 IPR022310 NAD/GMP synthase D4K88_RS05840 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS05840 IPR003694 NAD(+) synthetase D4K88_RS05845 IPR003758 Tetraacyldisaccharide 4'-kinase D4K88_RS05850 IPR000182 GNAT domain D4K88_RS05850 IPR016181 Acyl-CoA N-acyltransferase D4K88_RS05850 IPR020036 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase D4K88_RS05855 IPR003329 Acylneuraminate cytidylyltransferase D4K88_RS05855 IPR020039 Pseudaminic acid cytidylyltransferase D4K88_RS05855 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS05860 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS05860 IPR020039 Pseudaminic acid cytidylyltransferase D4K88_RS05860 IPR003329 Acylneuraminate cytidylyltransferase D4K88_RS05865 IPR000527 Flagellar L-ring protein D4K88_RS05885 IPR017665 Guanylate kinase D4K88_RS05885 IPR008145 Guanylate kinase/L-type calcium channel beta subunit D4K88_RS05885 IPR020590 Guanylate kinase, conserved site D4K88_RS05885 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05885 IPR008144 Guanylate kinase-like domain D4K88_RS05890 IPR006312 Sec-independent protein translocase protein TatA/E D4K88_RS05890 IPR003369 Sec-independent protein translocase protein TatA/B/E D4K88_RS05895 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site D4K88_RS05895 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding D4K88_RS05895 IPR035684 Arginyl-tRNA synthetase, catalytic core domain D4K88_RS05895 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS05895 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily D4K88_RS05895 IPR005148 Arginyl tRNA synthetase N-terminal domain D4K88_RS05895 IPR001278 Arginine-tRNA ligase D4K88_RS05895 IPR008909 DALR anticodon binding D4K88_RS05900 IPR026324 Haem oxygenase, HugZ D4K88_RS05900 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative D4K88_RS05900 IPR019595 Domain of unknown function DUF2470 D4K88_RS05900 IPR012349 FMN-binding split barrel D4K88_RS05900 IPR037119 Haem oxygenase HugZ-like superfamily D4K88_RS05935 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal D4K88_RS05935 IPR036627 CobW-like, C-terminal domain superfamily D4K88_RS05935 IPR003495 CobW/HypB/UreG, nucleotide-binding domain D4K88_RS05935 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05945 IPR037950 Peptidoglycan deacetylase PgdA-like D4K88_RS05945 IPR002509 NodB homology domain D4K88_RS05945 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel D4K88_RS05950 IPR003010 Carbon-nitrogen hydrolase D4K88_RS05950 IPR036526 Carbon-nitrogen hydrolase superfamily D4K88_RS05965 IPR005814 Aminotransferase class-III D4K88_RS05965 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS05965 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS05965 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS05965 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase D4K88_RS05980 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05980 IPR031167 OBG-type guanine nucleotide-binding (G) domain D4K88_RS05980 IPR035101 GTP-binding protein, Obg-type D4K88_RS05980 IPR014100 GTP-binding protein Obg/CgtA D4K88_RS05980 IPR006073 GTP binding domain D4K88_RS05980 IPR036726 GTP1/OBG domain superfamily D4K88_RS05980 IPR006169 GTP1/OBG domain D4K88_RS05980 IPR006074 GTP1/OBG, conserved site D4K88_RS05985 IPR003593 AAA+ ATPase domain D4K88_RS05985 IPR003439 ABC transporter-like D4K88_RS05985 IPR017871 ABC transporter, conserved site D4K88_RS05985 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal D4K88_RS05985 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05990 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS05990 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal D4K88_RS05990 IPR003593 AAA+ ATPase domain D4K88_RS05990 IPR003439 ABC transporter-like D4K88_RS05990 IPR017871 ABC transporter, conserved site D4K88_RS05995 IPR000515 ABC transporter type 1, transmembrane domain MetI-like D4K88_RS05995 IPR035906 MetI-like superfamily D4K88_RS05995 IPR025966 Oligopeptide transport permease C-like, N-terminal domain D4K88_RS06000 IPR000515 ABC transporter type 1, transmembrane domain MetI-like D4K88_RS06000 IPR035906 MetI-like superfamily D4K88_RS06005 IPR000914 Solute-binding protein family 5 domain D4K88_RS06005 IPR030678 Peptide/nickel binding protein, MppA-type D4K88_RS06005 IPR039424 Solute-binding protein family 5 D4K88_RS06005 IPR023765 Solute-binding protein family 5, conserved site D4K88_RS06010 IPR001684 Ribosomal protein L27 D4K88_RS06010 IPR018261 Ribosomal protein L27, conserved site D4K88_RS06015 IPR028909 Ribosomal protein L21-like D4K88_RS06015 IPR036164 L21-like superfamily D4K88_RS06015 IPR001787 Ribosomal protein L21 D4K88_RS06015 IPR018258 Ribosomal protein L21, conserved site D4K88_RS06025 IPR003010 Carbon-nitrogen hydrolase D4K88_RS06025 IPR023719 Aliphatic amidase D4K88_RS06025 IPR036526 Carbon-nitrogen hydrolase superfamily D4K88_RS06030 IPR006805 Anthranilate synthase component I, N-terminal D4K88_RS06030 IPR015890 Chorismate-utilising enzyme, C-terminal D4K88_RS06030 IPR005801 ADC synthase D4K88_RS06030 IPR005802 Aminodeoxychorismate synthase, component I D4K88_RS06030 IPR019999 Anthranilate synthase component I-like D4K88_RS06045 IPR000183 Ornithine/DAP/Arg decarboxylase D4K88_RS06045 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site D4K88_RS06045 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal D4K88_RS06045 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal D4K88_RS06045 IPR002986 Diaminopimelate decarboxylase, LysA D4K88_RS06045 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal D4K88_RS06045 IPR029066 PLP-binding barrel D4K88_RS06065 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06065 IPR000642 Peptidase M41 D4K88_RS06065 IPR041569 AAA ATPase, AAA+ lid domain D4K88_RS06065 IPR003593 AAA+ ATPase domain D4K88_RS06065 IPR037219 Peptidase M41-like D4K88_RS06065 IPR003960 ATPase, AAA-type, conserved site D4K88_RS06065 IPR003959 ATPase, AAA-type, core D4K88_RS06065 IPR005936 Peptidase, FtsH D4K88_RS06070 IPR013848 Methylthiotransferase, N-terminal D4K88_RS06070 IPR006467 MiaB-like tRNA modifying enzyme D4K88_RS06070 IPR038135 Methylthiotransferase, N-terminal domain superfamily D4K88_RS06070 IPR023404 Radical SAM, alpha/beta horseshoe D4K88_RS06070 IPR020612 Methylthiotransferase, conserved site D4K88_RS06070 IPR005839 Methylthiotransferase D4K88_RS06070 IPR006638 Elp3/MiaB/NifB D4K88_RS06070 IPR007197 Radical SAM D4K88_RS06080 IPR030960 3-dehydroquinate synthase domain D4K88_RS06080 IPR016037 3-dehydroquinate synthase AroB D4K88_RS06080 IPR030963 3-dehydroquinate synthase family D4K88_RS06090 IPR036511 Queuine tRNA-ribosyltransferase-like D4K88_RS06090 IPR004803 tRNA-guanine transglycosylase D4K88_RS06090 IPR002616 tRNA-guanine(15) transglycosylase-like D4K88_RS06100 IPR002201 Glycosyl transferase, family 9 D4K88_RS06100 IPR011910 ADP-heptose--LPS heptosyltransferase 2 D4K88_RS06105 IPR003695 Ppx/GppA phosphatase D4K88_RS06115 IPR013785 Aldolase-type TIM barrel D4K88_RS06115 IPR013798 Indole-3-glycerol phosphate synthase D4K88_RS06115 IPR011060 Ribulose-phosphate binding barrel D4K88_RS06115 IPR001468 Indole-3-glycerol phosphate synthase, conserved site D4K88_RS06125 IPR005358 Putative zinc- or iron-chelating domain containing protein D4K88_RS06150 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB D4K88_RS06150 IPR023404 Radical SAM, alpha/beta horseshoe D4K88_RS06150 IPR020612 Methylthiotransferase, conserved site D4K88_RS06150 IPR007197 Radical SAM D4K88_RS06150 IPR038135 Methylthiotransferase, N-terminal domain superfamily D4K88_RS06150 IPR013848 Methylthiotransferase, N-terminal D4K88_RS06150 IPR002792 TRAM domain D4K88_RS06150 IPR005839 Methylthiotransferase D4K88_RS06150 IPR006638 Elp3/MiaB/NifB D4K88_RS06160 IPR006680 Amidohydrolase-related D4K88_RS06160 IPR011059 Metal-dependent hydrolase, composite domain superfamily D4K88_RS06160 IPR032466 Metal-dependent hydrolase D4K88_RS06165 IPR011059 Metal-dependent hydrolase, composite domain superfamily D4K88_RS06165 IPR032466 Metal-dependent hydrolase D4K88_RS06165 IPR006680 Amidohydrolase-related D4K88_RS06170 IPR003834 Cytochrome C biogenesis protein, transmembrane domain D4K88_RS06175 IPR003959 ATPase, AAA-type, core D4K88_RS06175 IPR019489 Clp ATPase, C-terminal D4K88_RS06175 IPR036628 Clp, N-terminal domain superfamily D4K88_RS06175 IPR003593 AAA+ ATPase domain D4K88_RS06175 IPR018368 ClpA/B, conserved site 1 D4K88_RS06175 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06175 IPR028299 ClpA/B, conserved site 2 D4K88_RS06175 IPR004176 Clp, N-terminal D4K88_RS06175 IPR041546 ClpA/ClpB, AAA lid domain D4K88_RS06175 IPR001270 ClpA/B family D4K88_RS06180 IPR002941 DNA methylase N-4/N-6 D4K88_RS06180 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS06180 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS06180 IPR001091 Restriction/modification DNA-methylase D4K88_RS06185 IPR041551 BsaWI restriction endonuclease type 2 D4K88_RS06195 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS06195 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS06195 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class D4K88_RS06195 IPR041405 Type III R-M EcoP15I, C-terminal D4K88_RS06195 IPR002941 DNA methylase N-4/N-6 D4K88_RS06200 IPR025824 OB-fold nucleic acid binding domain D4K88_RS06200 IPR020579 Exonuclease VII, large subunit, C-terminal D4K88_RS06200 IPR003753 Exonuclease VII, large subunit D4K88_RS06205 IPR008915 Peptidase M50 D4K88_RS06205 IPR036034 PDZ superfamily D4K88_RS06205 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase D4K88_RS06220 IPR033128 Adenylosuccinate synthase, active site D4K88_RS06220 IPR018220 Adenylosuccinate synthase, GTP-binding site D4K88_RS06220 IPR042109 Adenylosuccinate synthetase, domain 1 D4K88_RS06220 IPR042110 Adenylosuccinate synthetase, domain 2 D4K88_RS06220 IPR042111 Adenylosuccinate synthetase, domain 3 D4K88_RS06220 IPR001114 Adenylosuccinate synthetase D4K88_RS06220 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06250 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06250 IPR017871 ABC transporter, conserved site D4K88_RS06250 IPR003439 ABC transporter-like D4K88_RS06250 IPR003593 AAA+ ATPase domain D4K88_RS06250 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal D4K88_RS06265 IPR011545 DEAD/DEAH box helicase domain D4K88_RS06265 IPR014001 Helicase superfamily 1/2, ATP-binding domain D4K88_RS06265 IPR001650 Helicase, C-terminal D4K88_RS06265 IPR014014 RNA helicase, DEAD-box type, Q motif D4K88_RS06265 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06270 IPR001782 Flagellar P-ring protein D4K88_RS06275 IPR016511 Uncharacterised conserved protein UCP007248 D4K88_RS06280 IPR003594 Histidine kinase/HSP90-like ATPase D4K88_RS06280 IPR036890 Histidine kinase/HSP90-like ATPase superfamily D4K88_RS06280 IPR005467 Histidine kinase domain D4K88_RS06280 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain D4K88_RS06280 IPR004358 Signal transduction histidine kinase-related protein, C-terminal D4K88_RS06280 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily D4K88_RS06285 IPR023188 DNA-binding protein Dps, conserved site D4K88_RS06285 IPR012347 Ferritin-like D4K88_RS06285 IPR009078 Ferritin-like superfamily D4K88_RS06285 IPR008331 Ferritin/DPS protein domain D4K88_RS06285 IPR002177 DNA-binding protein Dps D4K88_RS06300 IPR000092 Polyprenyl synthetase D4K88_RS06300 IPR008949 Isoprenoid synthase domain superfamily D4K88_RS06300 IPR033749 Polyprenyl synthetase, conserved site D4K88_RS06305 IPR018214 Glutamyl-tRNA reductase, conserved site D4K88_RS06305 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily D4K88_RS06305 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily D4K88_RS06305 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal D4K88_RS06305 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain D4K88_RS06305 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase D4K88_RS06305 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase D4K88_RS06305 IPR036291 NAD(P)-binding domain superfamily D4K88_RS06310 IPR036621 Anticodon-binding domain superfamily D4K88_RS06310 IPR002316 Proline-tRNA ligase, class IIa D4K88_RS06310 IPR006195 Aminoacyl-tRNA synthetase, class II D4K88_RS06310 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) D4K88_RS06310 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily D4K88_RS06310 IPR033730 Prokaryote proline-tRNA ligase core domain D4K88_RS06310 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 D4K88_RS06310 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type D4K88_RS06310 IPR004154 Anticodon-binding D4K88_RS06310 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain D4K88_RS06315 IPR022417 Porphobilinogen deaminase, N-terminal D4K88_RS06315 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily D4K88_RS06315 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site D4K88_RS06315 IPR000860 Porphobilinogen deaminase D4K88_RS06315 IPR022418 Porphobilinogen deaminase, C-terminal D4K88_RS06325 IPR011990 Tetratricopeptide-like helical domain superfamily D4K88_RS06325 IPR040239 Beta-lactamase HcpB-like D4K88_RS06325 IPR006597 Sel1-like repeat D4K88_RS06325 IPR019734 Tetratricopeptide repeat D4K88_RS06335 IPR016185 Pre-ATP-grasp domain superfamily D4K88_RS06335 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain D4K88_RS06340 IPR020913 Uncharacterised protein family UPF0323 D4K88_RS06350 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS06350 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase D4K88_RS06350 IPR003329 Acylneuraminate cytidylyltransferase D4K88_RS06365 IPR002645 STAS domain D4K88_RS06365 IPR036513 STAS domain superfamily D4K88_RS06365 IPR018045 Sulphate anion transporter, conserved site D4K88_RS06365 IPR011547 SLC26A/SulP transporter domain D4K88_RS06365 IPR001902 SLC26A/SulP transporter D4K88_RS06375 IPR002781 Transmembrane protein TauE-like D4K88_RS06380 IPR011057 Mss4-like superfamily D4K88_RS06380 IPR028427 Peptide methionine sulfoxide reductase D4K88_RS06380 IPR002569 Peptide methionine sulphoxide reductase MsrA D4K88_RS06380 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily D4K88_RS06380 IPR002579 Peptide methionine sulphoxide reductase MrsB D4K88_RS06385 IPR003593 AAA+ ATPase domain D4K88_RS06385 IPR004504 DNA repair protein RadA D4K88_RS06385 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain D4K88_RS06385 IPR041166 LapB, rubredoxin metal binding domain D4K88_RS06385 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS06385 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS06385 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06395 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily D4K88_RS06395 IPR034904 Fe-S cluster assembly domain superfamily D4K88_RS06395 IPR016217 Nitrogen fixation, NifU D4K88_RS06395 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal D4K88_RS06395 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal D4K88_RS06395 IPR010238 NIF system FeS cluster assembly, NifU D4K88_RS06395 IPR007419 BFD-like [2Fe-2S]-binding domain D4K88_RS06400 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS06400 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS06400 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS06400 IPR016454 Cysteine desulfurase D4K88_RS06400 IPR017773 Cysteine desulfurase NifS, proteobacteria D4K88_RS06400 IPR010240 Cysteine desulfurase IscS D4K88_RS06400 IPR000192 Aminotransferase class V domain D4K88_RS06410 IPR008914 Phosphatidylethanolamine-binding protein D4K88_RS06410 IPR036610 PEBP-like superfamily D4K88_RS06410 IPR005247 YbhB/YbcL D4K88_RS06415 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal D4K88_RS06415 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase D4K88_RS06415 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal D4K88_RS06415 IPR026877 DXP reductoisomerase C-terminal domain D4K88_RS06415 IPR036169 DXP reductoisomerase, C-terminal domain superfamily D4K88_RS06415 IPR036291 NAD(P)-binding domain superfamily D4K88_RS06420 IPR000374 Phosphatidate cytidylyltransferase D4K88_RS06425 IPR001898 Solute carrier family 13 D4K88_RS06430 IPR036188 FAD/NAD(P)-binding domain superfamily D4K88_RS06430 IPR020595 MnmG-related, conserved site D4K88_RS06430 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related D4K88_RS06430 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG D4K88_RS06430 IPR026904 GidA associated domain 3 D4K88_RS06435 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria D4K88_RS06435 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site D4K88_RS06435 IPR011650 Peptidase M20, dimerisation domain D4K88_RS06435 IPR036264 Bacterial exopeptidase dimerisation domain D4K88_RS06435 IPR002933 Peptidase M20 D4K88_RS06440 IPR040239 Beta-lactamase HcpB-like D4K88_RS06440 IPR011990 Tetratricopeptide-like helical domain superfamily D4K88_RS06440 IPR019734 Tetratricopeptide repeat D4K88_RS06440 IPR006597 Sel1-like repeat D4K88_RS06445 IPR003594 Histidine kinase/HSP90-like ATPase D4K88_RS06445 IPR036890 Histidine kinase/HSP90-like ATPase superfamily D4K88_RS06445 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS06445 IPR019805 Heat shock protein Hsp90, conserved site D4K88_RS06445 IPR037196 HSP90, C-terminal domain D4K88_RS06445 IPR001404 Heat shock protein Hsp90 family D4K88_RS06445 IPR020575 Heat shock protein Hsp90, N-terminal D4K88_RS06460 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 D4K88_RS06460 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06460 IPR019591 Mrp/NBP35 ATP-binding protein D4K88_RS06460 IPR002744 MIP18 family-like D4K88_RS06460 IPR034904 Fe-S cluster assembly domain superfamily D4K88_RS06460 IPR000808 Mrp, conserved site D4K88_RS06485 IPR016039 Thiolase-like D4K88_RS06485 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D4K88_RS06485 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 D4K88_RS06485 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal D4K88_RS06490 IPR003664 Fatty acid synthesis PlsX protein D4K88_RS06490 IPR012281 Phospholipid biosynthesis protein, PlsX-like D4K88_RS06495 IPR011332 Zinc-binding ribosomal protein D4K88_RS06495 IPR002677 Ribosomal protein L32p D4K88_RS06505 IPR034907 Nucleoside diphosphate kinase-like domain D4K88_RS06505 IPR036850 Nucleoside diphosphate kinase-like domain superfamily D4K88_RS06505 IPR023005 Nucleoside diphosphate kinase, active site D4K88_RS06505 IPR001564 Nucleoside diphosphate kinase D4K88_RS06510 IPR022629 S-adenosylmethionine synthetase, central domain D4K88_RS06510 IPR022630 S-adenosylmethionine synthetase, C-terminal D4K88_RS06510 IPR022631 S-adenosylmethionine synthetase, conserved site D4K88_RS06510 IPR022628 S-adenosylmethionine synthetase, N-terminal D4K88_RS06510 IPR002133 S-adenosylmethionine synthetase D4K88_RS06510 IPR022636 S-adenosylmethionine synthetase superfamily D4K88_RS06515 IPR001451 Hexapeptide repeat D4K88_RS06515 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD D4K88_RS06515 IPR011004 Trimeric LpxA-like superfamily D4K88_RS06515 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region D4K88_RS06520 IPR036291 NAD(P)-binding domain superfamily D4K88_RS06520 IPR002347 Short-chain dehydrogenase/reductase SDR D4K88_RS06520 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) D4K88_RS06525 IPR035990 Triosephosphate isomerase superfamily D4K88_RS06525 IPR013785 Aldolase-type TIM barrel D4K88_RS06525 IPR000652 Triosephosphate isomerase D4K88_RS06525 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic D4K88_RS06525 IPR020861 Triosephosphate isomerase, active site D4K88_RS06530 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit D4K88_RS06530 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit D4K88_RS06530 IPR004224 Fumarate reductase type B, transmembrane subunit D4K88_RS06535 IPR036188 FAD/NAD(P)-binding domain superfamily D4K88_RS06535 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site D4K88_RS06535 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily D4K88_RS06535 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily D4K88_RS06535 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain D4K88_RS06535 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal D4K88_RS06540 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site D4K88_RS06540 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal D4K88_RS06540 IPR012675 Beta-grasp domain superfamily D4K88_RS06540 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site D4K88_RS06540 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain D4K88_RS06540 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain D4K88_RS06540 IPR036010 2Fe-2S ferredoxin-like superfamily D4K88_RS06540 IPR009051 Alpha-helical ferredoxin D4K88_RS06540 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein D4K88_RS06545 IPR001736 Phospholipase D/Transphosphatidylase D4K88_RS06545 IPR025202 Phospholipase D-like domain D4K88_RS06550 IPR005134 Uncharacterised protein family UPF0114 D4K88_RS06550 IPR020761 Uncharacterised protein family UPF0114, bacteria D4K88_RS06580 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS06580 IPR039429 Serine hydroxymethyltransferase-like domain D4K88_RS06580 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site D4K88_RS06580 IPR001085 Serine hydroxymethyltransferase D4K88_RS06580 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS06580 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS06585 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type D4K88_RS06585 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) D4K88_RS06585 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS06585 IPR006195 Aminoacyl-tRNA synthetase, class II D4K88_RS06585 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal D4K88_RS06585 IPR002313 Lysine-tRNA ligase, class II D4K88_RS06595 IPR036526 Carbon-nitrogen hydrolase superfamily D4K88_RS06595 IPR003010 Carbon-nitrogen hydrolase D4K88_RS06595 IPR004563 Apolipoprotein N-acyltransferase D4K88_RS06600 IPR017871 ABC transporter, conserved site D4K88_RS06600 IPR015854 ABC transporter, lipoprotein release, LolD D4K88_RS06600 IPR003439 ABC transporter-like D4K88_RS06600 IPR011924 Lipoprotein releasing system, ATP-binding protein D4K88_RS06600 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06600 IPR003593 AAA+ ATPase domain D4K88_RS06605 IPR013132 N-acetylneuraminic acid synthase, N-terminal D4K88_RS06605 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal D4K88_RS06605 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily D4K88_RS06605 IPR013974 SAF domain D4K88_RS06605 IPR020030 Pseudaminic acid biosynthesis, PseI D4K88_RS06605 IPR013785 Aldolase-type TIM barrel D4K88_RS06610 IPR013185 Translation elongation factor, KOW-like D4K88_RS06610 IPR020599 Translation elongation factor P/YeiP D4K88_RS06610 IPR012340 Nucleic acid-binding, OB-fold D4K88_RS06610 IPR014722 Ribosomal protein L2, domain 2 D4K88_RS06610 IPR015365 Elongation factor P, C-terminal D4K88_RS06610 IPR011768 Translation elongation factor P D4K88_RS06610 IPR013852 Translation elongation factor P/YeiP, conserved site D4K88_RS06610 IPR001059 Translation elongation factor P/YeiP, central D4K88_RS06610 IPR008991 Translation protein SH3-like domain superfamily D4K88_RS06615 IPR013785 Aldolase-type TIM barrel D4K88_RS06615 IPR000771 Fructose-bisphosphate aldolase, class-II D4K88_RS06615 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 D4K88_RS06620 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type D4K88_RS06620 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site D4K88_RS06640 IPR008284 Molybdenum cofactor biosynthesis, conserved site D4K88_RS06640 IPR001453 MoaB/Mog domain D4K88_RS06640 IPR038987 Molybdopterin biosynthesis protein MoeA-like D4K88_RS06640 IPR036425 MoaB/Mog-like domain superfamily D4K88_RS06640 IPR036688 MoeA, C-terminal, domain IV superfamily D4K88_RS06640 IPR005111 MoeA, C-terminal, domain IV D4K88_RS06640 IPR005110 MoeA, N-terminal and linker domain D4K88_RS06640 IPR036135 MoeA, N-terminal and linker domain superfamily D4K88_RS06645 IPR000352 Peptide chain release factor class I D4K88_RS06645 IPR005139 Peptide chain release factor D4K88_RS06645 IPR004374 Peptide chain release factor 2 D4K88_RS06655 IPR001539 Peptidase U32 D4K88_RS06670 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS06670 IPR016032 Signal transduction response regulator, C-terminal effector D4K88_RS06670 IPR039420 Transcriptional regulatory protein WalR-like D4K88_RS06670 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS06670 IPR011006 CheY-like superfamily D4K88_RS06670 IPR001867 OmpR/PhoB-type DNA-binding domain D4K88_RS06680 IPR030656 Delta-aminolevulinic acid dehydratase, active site D4K88_RS06680 IPR001731 Delta-aminolevulinic acid dehydratase D4K88_RS06680 IPR013785 Aldolase-type TIM barrel D4K88_RS06685 IPR017856 Integrase-like, N-terminal D4K88_RS06685 IPR026564 Transcriptional regulator TACO1-like, domain 3 D4K88_RS06685 IPR029072 YebC-like D4K88_RS06685 IPR002876 Transcriptional regulator TACO1-like D4K88_RS06695 IPR036515 Transposase IS200-like superfamily D4K88_RS06695 IPR002686 Transposase IS200-like D4K88_RS06700 IPR001959 Probable transposase, IS891/IS1136/IS1341 D4K88_RS06700 IPR010095 Transposase IS605, OrfB, C-terminal D4K88_RS06700 IPR021027 Transposase, putative, helix-turn-helix domain D4K88_RS06710 IPR011990 Tetratricopeptide-like helical domain superfamily D4K88_RS06710 IPR006597 Sel1-like repeat D4K88_RS06710 IPR040239 Beta-lactamase HcpB-like D4K88_RS06725 IPR000623 Shikimate kinase/Threonine synthase-like 1 D4K88_RS06725 IPR023000 Shikimate kinase, conserved site D4K88_RS06725 IPR031322 Shikimate kinase/gluconokinase D4K88_RS06725 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06740 IPR020810 Enolase, C-terminal TIM barrel domain D4K88_RS06740 IPR000941 Enolase D4K88_RS06740 IPR036849 Enolase-like, C-terminal domain superfamily D4K88_RS06740 IPR020809 Enolase, conserved site D4K88_RS06740 IPR029017 Enolase-like, N-terminal D4K88_RS06740 IPR020811 Enolase, N-terminal D4K88_RS06745 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS06745 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface D4K88_RS06745 IPR023400 DNA recombination and repair protein RecA, C-terminal D4K88_RS06745 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain D4K88_RS06745 IPR020584 DNA recombination/repair protein RecA, conserved site D4K88_RS06745 IPR003593 AAA+ ATPase domain D4K88_RS06745 IPR013765 DNA recombination and repair protein RecA D4K88_RS06775 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily D4K88_RS06775 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal D4K88_RS06775 IPR009056 Cytochrome c-like domain D4K88_RS06775 IPR036909 Cytochrome c-like domain superfamily D4K88_RS06775 IPR004678 Cytochrome c oxidase cbb3-type, subunit III D4K88_RS06790 IPR000883 Cytochrome c oxidase subunit I D4K88_RS06790 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site D4K88_RS06790 IPR023616 Cytochrome c oxidase-like, subunit I domain D4K88_RS06790 IPR036927 Cytochrome c oxidase-like, subunit I superfamily D4K88_RS06790 IPR004677 Cytochrome c oxidase cbb3-type, subunit I D4K88_RS06795 IPR030676 Citrate carrier CitT-related D4K88_RS06795 IPR001898 Solute carrier family 13 D4K88_RS06800 IPR015797 NUDIX hydrolase-like domain superfamily D4K88_RS06800 IPR029119 MutY, C-terminal D4K88_RS06800 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal D4K88_RS06800 IPR000445 Helix-hairpin-helix motif D4K88_RS06800 IPR004035 Endonuclease III, iron-sulphur binding site D4K88_RS06800 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif D4K88_RS06800 IPR005760 A/G-specific adenine glycosylase MutY D4K88_RS06800 IPR011257 DNA glycosylase D4K88_RS06800 IPR004036 Endonuclease III-like, conserved site-2 D4K88_RS06800 IPR003265 HhH-GPD domain D4K88_RS06805 IPR003804 L-lactate permease D4K88_RS06810 IPR003804 L-lactate permease D4K88_RS06815 IPR022822 Lactate utilization protein A D4K88_RS06815 IPR004017 Cysteine-rich domain D4K88_RS06820 IPR037171 NagB/RpiA transferase-like D4K88_RS06820 IPR003741 LUD domain D4K88_RS06820 IPR009051 Alpha-helical ferredoxin D4K88_RS06820 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily D4K88_RS06820 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site D4K88_RS06820 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain D4K88_RS06820 IPR004452 4Fe-4S binding protein D4K88_RS06820 IPR024569 4Fe-4S binding protein, C-terminal D4K88_RS06825 IPR037171 NagB/RpiA transferase-like D4K88_RS06825 IPR003741 LUD domain D4K88_RS06825 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily D4K88_RS06830 IPR013766 Thioredoxin domain D4K88_RS06830 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant D4K88_RS06830 IPR024706 Peroxiredoxin, AhpC-type D4K88_RS06830 IPR036249 Thioredoxin-like superfamily D4K88_RS06840 IPR002480 DAHP synthetase, class II D4K88_RS06840 IPR013785 Aldolase-type TIM barrel D4K88_RS06845 IPR004694 Hydroxy amino acid transporter D4K88_RS06845 IPR018227 Amino acid/polyamine transporter 2 D4K88_RS06850 IPR029009 Allosteric substrate binding domain superfamily D4K88_RS06850 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form D4K88_RS06850 IPR005130 Serine dehydratase-like, alpha subunit D4K88_RS06850 IPR005131 Serine dehydratase beta chain D4K88_RS06870 IPR035566 Ribosomal protein L20, C-terminal D4K88_RS06870 IPR005813 Ribosomal protein L20 D4K88_RS06875 IPR037229 Ribosomal protein L35 superfamily D4K88_RS06875 IPR018265 Ribosomal protein L35, conserved site D4K88_RS06875 IPR021137 Ribosomal protein L35 D4K88_RS06875 IPR001706 Ribosomal protein L35, non-mitochondrial D4K88_RS06880 IPR001288 Translation initiation factor 3 D4K88_RS06880 IPR019813 Translation initiation factor 3, conserved site D4K88_RS06880 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily D4K88_RS06880 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily D4K88_RS06880 IPR019815 Translation initiation factor 3, C-terminal D4K88_RS06880 IPR019814 Translation initiation factor 3, N-terminal D4K88_RS06885 IPR006195 Aminoacyl-tRNA synthetase, class II D4K88_RS06885 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) D4K88_RS06885 IPR036621 Anticodon-binding domain superfamily D4K88_RS06885 IPR004154 Anticodon-binding D4K88_RS06885 IPR033728 Threonine-tRNA ligase catalytic core domain D4K88_RS06885 IPR012947 Threonyl/alanyl tRNA synthetase, SAD D4K88_RS06885 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily D4K88_RS06885 IPR002320 Threonine-tRNA ligase, class IIa D4K88_RS06895 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding D4K88_RS06895 IPR018274 PEP-utilising enzyme, active site D4K88_RS06895 IPR000121 PEP-utilising enzyme, C-terminal D4K88_RS06895 IPR023151 PEP-utilising enzyme, conserved site D4K88_RS06895 IPR008279 PEP-utilising enzyme, mobile domain D4K88_RS06895 IPR040442 Pyruvate kinase-like domain superfamily D4K88_RS06895 IPR013815 ATP-grasp fold, subdomain 1 D4K88_RS06895 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily D4K88_RS06895 IPR006319 Phosphoenolpyruvate synthase D4K88_RS06895 IPR036637 Phosphohistidine domain superfamily D4K88_RS06905 IPR013785 Aldolase-type TIM barrel D4K88_RS06905 IPR040084 GTPase Obg D4K88_RS06905 IPR007197 Radical SAM D4K88_RS06910 IPR003601 DNA topoisomerase, type IA, domain 2 D4K88_RS06910 IPR000380 DNA topoisomerase, type IA D4K88_RS06910 IPR023406 DNA topoisomerase, type IA, active site D4K88_RS06910 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 D4K88_RS06910 IPR005733 DNA topoisomerase I, bacterial-type D4K88_RS06910 IPR006171 TOPRIM domain D4K88_RS06910 IPR034149 DNA topoisomerase 1, TOPRIM domain D4K88_RS06910 IPR028612 DNA topoisomerase I, type IA D4K88_RS06910 IPR003602 DNA topoisomerase, type IA, DNA-binding domain D4K88_RS06910 IPR013498 DNA topoisomerase, type IA, zn finger D4K88_RS06910 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 D4K88_RS06910 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 D4K88_RS06910 IPR013497 DNA topoisomerase, type IA, central D4K88_RS06910 IPR023405 DNA topoisomerase, type IA, core domain D4K88_RS06915 IPR001492 Flagellin D4K88_RS06915 IPR001029 Flagellin, D0/D1 domain D4K88_RS06915 IPR010810 Flagellin hook, IN motif D4K88_RS06935 IPR036390 Winged helix DNA-binding domain superfamily D4K88_RS06935 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS06935 IPR002571 Heat-inducible transcription repressor HrcA D4K88_RS06940 IPR000740 GrpE nucleotide exchange factor D4K88_RS06940 IPR013805 GrpE nucleotide exchange factor, coiled-coil D4K88_RS06940 IPR009012 GrpE nucleotide exchange factor, head D4K88_RS06945 IPR013126 Heat shock protein 70 family D4K88_RS06945 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily D4K88_RS06945 IPR012725 Chaperone DnaK D4K88_RS06945 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily D4K88_RS06945 IPR018181 Heat shock protein 70, conserved site D4K88_RS06955 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site D4K88_RS06955 IPR001926 Pyridoxal-phosphate dependent enzyme D4K88_RS06955 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme D4K88_RS06960 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme D4K88_RS06960 IPR015424 Pyridoxal phosphate-dependent transferase D4K88_RS06960 IPR015421 Pyridoxal phosphate-dependent transferase, major domain D4K88_RS06960 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 D4K88_RS06965 IPR003815 S-ribosylhomocysteinase (LuxS) D4K88_RS06965 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like D4K88_RS06965 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily D4K88_RS06970 IPR006146 5'-Nucleotidase, conserved site D4K88_RS06970 IPR006179 5'-Nucleotidase/apyrase D4K88_RS06970 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type D4K88_RS06970 IPR041827 CpdB, N-terminal metallophosphatase domain D4K88_RS06970 IPR019931 LPXTG cell wall anchor domain D4K88_RS06970 IPR029052 Metallo-dependent phosphatase-like D4K88_RS06970 IPR036907 5'-Nucleotidase, C-terminal domain superfamily D4K88_RS06970 IPR008334 5'-Nucleotidase, C-terminal D4K88_RS06975 IPR004090 Chemotaxis methyl-accepting receptor D4K88_RS06975 IPR000727 Target SNARE coiled-coil homology domain D4K88_RS06975 IPR033480 Single Cache domain 2 D4K88_RS06975 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain D4K88_RS06975 IPR003660 HAMP domain D4K88_RS06980 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS06980 IPR001173 Glycosyltransferase 2-like D4K88_RS06990 IPR003828 Epoxyqueuosine reductase QueH D4K88_RS06995 IPR004090 Chemotaxis methyl-accepting receptor D4K88_RS06995 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain D4K88_RS06995 IPR001610 PAC motif D4K88_RS06995 IPR000014 PAS domain D4K88_RS06995 IPR000700 PAS-associated, C-terminal D4K88_RS06995 IPR035965 PAS domain superfamily D4K88_RS06995 IPR013655 PAS fold-3 D4K88_RS07000 IPR000754 Ribosomal protein S9 D4K88_RS07000 IPR020574 Ribosomal protein S9, conserved site D4K88_RS07000 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup D4K88_RS07000 IPR020568 Ribosomal protein S5 domain 2-type fold D4K88_RS07000 IPR023035 Ribosomal protein S9, bacterial/plastid D4K88_RS07005 IPR036899 Ribosomal protein L13 superfamily D4K88_RS07005 IPR005822 Ribosomal protein L13 D4K88_RS07005 IPR005823 Ribosomal protein L13, bacterial-type D4K88_RS07005 IPR023563 Ribosomal protein L13, conserved site D4K88_RS07010 IPR035366 Protein of unknown function DUF5408 D4K88_RS07015 IPR036188 FAD/NAD(P)-binding domain superfamily D4K88_RS07015 IPR006231 Malate:quinone-oxidoreductase D4K88_RS07025 IPR028630 RNA polymerase sigma factor RpoD D4K88_RS07025 IPR014284 RNA polymerase sigma-70 like domain D4K88_RS07025 IPR000943 RNA polymerase sigma-70 D4K88_RS07025 IPR009042 RNA polymerase sigma-70 region 1.2 D4K88_RS07025 IPR007627 RNA polymerase sigma-70 region 2 D4K88_RS07025 IPR007624 RNA polymerase sigma-70 region 3 D4K88_RS07025 IPR007630 RNA polymerase sigma-70 region 4 D4K88_RS07025 IPR013325 RNA polymerase sigma factor, region 2 D4K88_RS07025 IPR013324 RNA polymerase sigma factor, region 3/4-like D4K88_RS07025 IPR012760 RNA polymerase sigma factor RpoD, C-terminal D4K88_RS07025 IPR036388 Winged helix-like DNA-binding domain superfamily D4K88_RS07030 IPR000845 Nucleoside phosphorylase domain D4K88_RS07030 IPR035994 Nucleoside phosphorylase superfamily D4K88_RS07030 IPR010049 MTA/SAH nucleosidase D4K88_RS07035 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding D4K88_RS07035 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type D4K88_RS07035 IPR024925 Malonyl CoA-acyl carrier protein transacylase D4K88_RS07035 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase D4K88_RS07035 IPR014043 Acyl transferase D4K88_RS07035 IPR001227 Acyl transferase domain superfamily D4K88_RS07045 IPR011335 Restriction endonuclease type II-like D4K88_RS07045 IPR021191 Restriction endonuclease, type II, DpmII D4K88_RS07045 IPR007637 Restriction endonuclease, type II, DpmII-like D4K88_RS07050 IPR002941 DNA methylase N-4/N-6 D4K88_RS07050 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS07050 IPR001091 Restriction/modification DNA-methylase D4K88_RS07050 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS07055 IPR002516 Glycosyl transferase, family 11 D4K88_RS07070 IPR036291 NAD(P)-binding domain superfamily D4K88_RS07070 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site D4K88_RS07070 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain D4K88_RS07070 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D4K88_RS07080 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme D4K88_RS07080 IPR004450 Threonine synthase-like D4K88_RS07080 IPR037158 Threonine synthase, N-terminal domain superfamily D4K88_RS07080 IPR001926 Pyridoxal-phosphate dependent enzyme D4K88_RS07080 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site D4K88_RS07085 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain D4K88_RS07085 IPR004090 Chemotaxis methyl-accepting receptor D4K88_RS07085 IPR033480 Single Cache domain 2 D4K88_RS07085 IPR003660 HAMP domain D4K88_RS07110 IPR004373 Peptide chain release factor 1 D4K88_RS07110 IPR000352 Peptide chain release factor class I D4K88_RS07110 IPR005139 Peptide chain release factor D4K88_RS07115 IPR036510 Ribosomal protein S20 superfamily D4K88_RS07115 IPR002583 Ribosomal protein S20 D4K88_RS07120 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III D4K88_RS07120 IPR005841 Alpha-D-phosphohexomutase superfamily D4K88_RS07120 IPR016066 Alpha-D-phosphohexomutase, conserved site D4K88_RS07120 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily D4K88_RS07120 IPR005843 Alpha-D-phosphohexomutase, C-terminal D4K88_RS07120 IPR006352 Phosphoglucosamine mutase, bacterial type D4K88_RS07120 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II D4K88_RS07120 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III D4K88_RS07120 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I D4K88_RS07125 IPR001872 Peptidase A8, signal peptidase II D4K88_RS07135 IPR008223 Urease, gamma-beta subunit D4K88_RS07135 IPR002026 Urease, gamma/gamma-beta subunit D4K88_RS07135 IPR002019 Urease, beta subunit D4K88_RS07135 IPR036461 Urease, beta subunit superfamily D4K88_RS07135 IPR036463 Urease, gamma subunit superfamily D4K88_RS07140 IPR032466 Metal-dependent hydrolase D4K88_RS07140 IPR005848 Urease, alpha subunit D4K88_RS07140 IPR011059 Metal-dependent hydrolase, composite domain superfamily D4K88_RS07140 IPR011612 Urease alpha-subunit, N-terminal domain D4K88_RS07140 IPR017950 Urease active site D4K88_RS07140 IPR017951 Urease alpha subunit, C-terminal D4K88_RS07140 IPR029754 Urease nickel binding site D4K88_RS07140 IPR006680 Amidohydrolase-related D4K88_RS07145 IPR003211 AmiS/UreI transporter D4K88_RS07145 IPR038523 AmiS/UreI transporter superfamily D4K88_RS07150 IPR012406 Urease accessory protein UreE D4K88_RS07150 IPR036118 UreE urease accessory, N-terminal domain superfamily D4K88_RS07150 IPR004029 UreE urease accessory, N-terminal D4K88_RS07150 IPR036675 UreE, C-terminal domain superfamily D4K88_RS07150 IPR007864 Urease accessory protein UreE, C-terminal domain D4K88_RS07155 IPR038277 UreF domain superfamily D4K88_RS07155 IPR002639 Urease accessory protein UreF D4K88_RS07160 IPR004400 Urease accessory protein UreG D4K88_RS07160 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS07160 IPR003495 CobW/HypB/UreG, nucleotide-binding domain D4K88_RS07165 IPR002669 Urease accessory protein UreD D4K88_RS07225 IPR016163 Aldehyde dehydrogenase, C-terminal D4K88_RS07225 IPR016162 Aldehyde dehydrogenase, N-terminal D4K88_RS07225 IPR015590 Aldehyde dehydrogenase domain D4K88_RS07225 IPR013321 Arc-type ribbon-helix-helix D4K88_RS07225 IPR025703 Bifunctional protein PutA D4K88_RS07225 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 D4K88_RS07225 IPR029041 FAD-linked oxidoreductase-like D4K88_RS07225 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain D4K88_RS07225 IPR024090 Proline dehydrogenase PutA, domain I D4K88_RS07225 IPR024089 Proline dehydrogenase PutA, domain I/II D4K88_RS07225 IPR024082 Proline dehydrogenase PutA, domain II D4K88_RS07225 IPR002872 Proline dehydrogenase domain D4K88_RS07225 IPR010985 Ribbon-helix-helix D4K88_RS07225 IPR016161 Aldehyde/histidinol dehydrogenase D4K88_RS07225 IPR016160 Aldehyde dehydrogenase, cysteine active site D4K88_RS07225 IPR029510 Aldehyde dehydrogenase, glutamic acid active site D4K88_RS07230 IPR018212 Sodium/solute symporter, conserved site D4K88_RS07230 IPR001734 Sodium/solute symporter D4K88_RS07230 IPR011851 Sodium/proline symporter D4K88_RS07230 IPR038377 Sodium/glucose symporter superfamily D4K88_RS07255 IPR002941 DNA methylase N-4/N-6 D4K88_RS07255 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS07255 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class D4K88_RS07255 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS07270 IPR010982 Lambda repressor-like, DNA-binding domain superfamily D4K88_RS07270 IPR001387 Cro/C1-type helix-turn-helix domain D4K88_RS07270 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site D4K88_RS07270 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS07270 IPR001525 C-5 cytosine methyltransferase D4K88_RS07270 IPR018117 DNA methylase, C-5 cytosine-specific, active site D4K88_RS07275 IPR002941 DNA methylase N-4/N-6 D4K88_RS07275 IPR002052 DNA methylase, N-6 adenine-specific, conserved site D4K88_RS07275 IPR001091 Restriction/modification DNA-methylase D4K88_RS07275 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase D4K88_RS07280 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type D4K88_RS07280 IPR017754 Agmatine deiminase D4K88_RS07285 IPR011125 Zinc finger, HypF-type D4K88_RS07285 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily D4K88_RS07285 IPR004421 Carbamoyltransferase, HypF-type D4K88_RS07285 IPR017968 Acylphosphatase, conserved site D4K88_RS07285 IPR001792 Acylphosphatase-like domain D4K88_RS07285 IPR036046 Acylphosphatase-like domain superfamily D4K88_RS07285 IPR006070 YrdC-like domain D4K88_RS07285 IPR041440 HypF, Kae1-like domain D4K88_RS07290 IPR016188 PurM-like, N-terminal domain D4K88_RS07290 IPR011854 Carbamoyl dehydratase HypE D4K88_RS07290 IPR036676 PurM-like, C-terminal domain superfamily D4K88_RS07290 IPR036921 PurM-like, N-terminal domain superfamily D4K88_RS07290 IPR010918 PurM-like, C-terminal domain D4K88_RS07295 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase D4K88_RS07295 IPR036291 NAD(P)-binding domain superfamily D4K88_RS07295 IPR001509 NAD-dependent epimerase/dehydratase D4K88_RS07300 IPR016040 NAD(P)-binding domain D4K88_RS07300 IPR036291 NAD(P)-binding domain superfamily D4K88_RS07300 IPR006368 GDP-mannose 4,6-dehydratase D4K88_RS07305 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase D4K88_RS07305 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal D4K88_RS07305 IPR005835 Nucleotidyl transferase domain D4K88_RS07305 IPR029044 Nucleotide-diphospho-sugar transferases D4K88_RS07305 IPR014710 RmlC-like jelly roll fold D4K88_RS07305 IPR011051 RmlC-like cupin domain superfamily D4K88_RS07340 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily D4K88_RS07340 IPR004401 Nucleoid-associated protein YbaB/EbfC family D4K88_RS07345 IPR003190 Aspartate decarboxylase D4K88_RS07345 IPR009010 Aspartate decarboxylase-like domain superfamily D4K88_RS07350 IPR004176 Clp, N-terminal D4K88_RS07350 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA D4K88_RS07350 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS07350 IPR018368 ClpA/B, conserved site 1 D4K88_RS07350 IPR028299 ClpA/B, conserved site 2 D4K88_RS07350 IPR041546 ClpA/ClpB, AAA lid domain D4K88_RS07350 IPR036628 Clp, N-terminal domain superfamily D4K88_RS07350 IPR019489 Clp ATPase, C-terminal D4K88_RS07350 IPR003959 ATPase, AAA-type, core D4K88_RS07350 IPR001270 ClpA/B family D4K88_RS07350 IPR003593 AAA+ ATPase domain D4K88_RS07355 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like D4K88_RS07355 IPR003769 Adaptor protein ClpS, core D4K88_RS07355 IPR022935 ATP-dependent Clp protease adaptor protein ClpS D4K88_RS07360 IPR006016 UspA D4K88_RS07360 IPR006015 Universal stress protein A family D4K88_RS07360 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS07370 IPR004472 Dethiobiotin synthase BioD D4K88_RS07370 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS07375 IPR011088 Bacteriophage phiNM3, A0EWY4 D4K88_RS07380 IPR024084 Isopropylmalate dehydrogenase-like domain D4K88_RS07380 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic D4K88_RS07380 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site D4K88_RS07385 IPR036969 Citrate synthase superfamily D4K88_RS07385 IPR024176 Citrate synthase, bacterial-type D4K88_RS07385 IPR019810 Citrate synthase active site D4K88_RS07385 IPR002020 Citrate synthase D4K88_RS07385 IPR016143 Citrate synthase-like, small alpha subdomain D4K88_RS07385 IPR016142 Citrate synthase-like, large alpha subdomain D4K88_RS07400 IPR040423 Phosphoethanolamine transferase D4K88_RS07400 IPR000917 Sulfatase, N-terminal D4K88_RS07400 IPR017850 Alkaline-phosphatase-like, core domain superfamily D4K88_RS07400 IPR012549 Phosphoethanolamine transferase, N-terminal D4K88_RS07405 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase D4K88_RS07405 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily D4K88_RS07410 IPR005730 Carboxynorspermidine decarboxylase D4K88_RS07410 IPR029066 PLP-binding barrel D4K88_RS07410 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal D4K88_RS07410 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal D4K88_RS07415 IPR001789 Signal transduction response regulator, receiver domain D4K88_RS07415 IPR036061 CheW-like domain superfamily D4K88_RS07415 IPR024181 Chemotaxis response regulator CheV D4K88_RS07415 IPR011006 CheY-like superfamily D4K88_RS07415 IPR002545 CheW-like domain D4K88_RS07450 IPR023382 Adenine nucleotide alpha hydrolase-like domains D4K88_RS07450 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS07450 IPR004506 tRNA-specific 2-thiouridylase D4K88_RS07455 IPR002694 Zinc finger, CHC2-type D4K88_RS07455 IPR013264 DNA primase, catalytic core, N-terminal D4K88_RS07455 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal D4K88_RS07455 IPR031988 DNA primase DnaG, C-terminal helicase-binding domain D4K88_RS07455 IPR006171 TOPRIM domain D4K88_RS07455 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily D4K88_RS07455 IPR006295 DNA primase, DnaG D4K88_RS07455 IPR036977 DNA Primase, CHC2-type zinc finger D4K88_RS07455 IPR030846 DNA primase DnaG, bacteria D4K88_RS07455 IPR034151 Bacterial DnaG primase, TOPRIM domain D4K88_RS07465 IPR011032 GroES-like superfamily D4K88_RS07465 IPR018369 Chaperonin GroES, conserved site D4K88_RS07465 IPR037124 GroES chaperonin superfamily D4K88_RS07465 IPR020818 GroES chaperonin family D4K88_RS07470 IPR001844 Chaperonin Cpn60 D4K88_RS07470 IPR002423 Chaperonin Cpn60/TCP-1 family D4K88_RS07470 IPR027409 GroEL-like apical domain superfamily D4K88_RS07470 IPR027413 GroEL-like equatorial domain superfamily D4K88_RS07470 IPR027410 TCP-1-like chaperonin intermediate domain superfamily D4K88_RS07470 IPR018370 Chaperonin Cpn60, conserved site D4K88_RS07505 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS07505 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain D4K88_RS07505 IPR004821 Cytidyltransferase-like domain D4K88_RS07505 IPR003721 Pantoate-beta-alanine ligase D4K88_RS07510 IPR014732 Orotidine 5'-phosphate decarboxylase D4K88_RS07510 IPR013785 Aldolase-type TIM barrel D4K88_RS07510 IPR011060 Ribulose-phosphate binding barrel D4K88_RS07510 IPR001754 Orotidine 5'-phosphate decarboxylase domain D4K88_RS07510 IPR018089 Orotidine 5'-phosphate decarboxylase, active site D4K88_RS07515 IPR036874 Carbonic anhydrase superfamily D4K88_RS07515 IPR001765 Carbonic anhydrase D4K88_RS07515 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site D4K88_RS07520 IPR006269 3-deoxy-8-phosphooctulonate synthase D4K88_RS07520 IPR006218 DAHP synthetase I/KDSA D4K88_RS07520 IPR013785 Aldolase-type TIM barrel D4K88_RS07525 IPR036467 Lumazine/riboflavin synthase superfamily D4K88_RS07525 IPR002180 Lumazine/riboflavin synthase D4K88_RS07525 IPR034964 Lumazine synthase D4K88_RS07530 IPR006027 NusB/RsmB/TIM44 D4K88_RS07530 IPR011605 NusB antitermination factor D4K88_RS07530 IPR035926 NusB-like superfamily D4K88_RS07540 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 D4K88_RS07540 IPR025217 Domain of unknown function DUF3944 D4K88_RS07545 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 D4K88_RS07555 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 D4K88_RS07565 IPR012834 Flagellar basal-body rod FlgG D4K88_RS07565 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like D4K88_RS07565 IPR010930 Flagellar basal-body/hook protein, C-terminal domain D4K88_RS07565 IPR020013 Flagellar hook-basal body protein, FlgE/F/G D4K88_RS07565 IPR019776 Flagellar basal body rod protein, conserved site D4K88_RS07565 IPR001444 Flagellar basal body rod protein, N-terminal D4K88_RS07570 IPR017861 Kae1/TsaD family D4K88_RS07570 IPR017860 Peptidase M22, conserved site D4K88_RS07570 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD D4K88_RS07570 IPR000905 Gcp-like domain D4K88_RS07575 IPR037539 4-hydroxythreonine-4-phosphate dehydrogenase, epsilonproteobacteria D4K88_RS07575 IPR005255 PdxA family D4K88_RS07580 IPR036130 Pyridoxine 5'-phosphate synthase D4K88_RS07580 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ D4K88_RS07580 IPR013785 Aldolase-type TIM barrel D4K88_RS07585 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site D4K88_RS07585 IPR000715 Glycosyl transferase, family 4 D4K88_RS07590 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase D4K88_RS07590 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily D4K88_RS07605 IPR035906 MetI-like superfamily D4K88_RS07605 IPR000515 ABC transporter type 1, transmembrane domain MetI-like D4K88_RS07610 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS07610 IPR003593 AAA+ ATPase domain D4K88_RS07610 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain D4K88_RS07610 IPR026253 Methionine import ATP-binding protein MetN D4K88_RS07610 IPR017871 ABC transporter, conserved site D4K88_RS07610 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal D4K88_RS07610 IPR018449 NIL domain D4K88_RS07610 IPR003439 ABC transporter-like D4K88_RS07620 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily D4K88_RS07620 IPR001783 Lumazine-binding protein D4K88_RS07620 IPR017938 Riboflavin synthase-like beta-barrel D4K88_RS07620 IPR026017 Lumazine-binding domain D4K88_RS07625 IPR015991 Uncharacterised hydrolase TatD-type D4K88_RS07625 IPR018228 Deoxyribonuclease, TatD-related, conserved site D4K88_RS07625 IPR032466 Metal-dependent hydrolase D4K88_RS07625 IPR001130 TatD family D4K88_RS07630 IPR000189 Prokaryotic transglycosylase, active site D4K88_RS07630 IPR018392 LysM domain D4K88_RS07630 IPR036779 LysM domain superfamily D4K88_RS07630 IPR023346 Lysozyme-like domain superfamily D4K88_RS07630 IPR008258 Transglycosylase SLT domain 1 D4K88_RS07635 IPR034718 Endolytic peptidoglycan transglycosylase RlpA D4K88_RS07635 IPR009009 RlpA-like protein, double-psi beta-barrel domain D4K88_RS07635 IPR036908 RlpA-like domain superfamily D4K88_RS07635 IPR036680 Sporulation-like domain superfamily D4K88_RS07635 IPR007730 Sporulation-like domain D4K88_RS07635 IPR012997 Rare lipoprotein A D4K88_RS07640 IPR036412 HAD-like superfamily D4K88_RS07640 IPR023214 HAD superfamily D4K88_RS07640 IPR010023 KdsC family D4K88_RS07655 IPR030393 EngB-type guanine nucleotide-binding (G) domain D4K88_RS07655 IPR006073 GTP binding domain D4K88_RS07655 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS07655 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC D4K88_RS07665 IPR001460 Penicillin-binding protein, transpeptidase D4K88_RS07665 IPR036138 Penicillin-binding protein, dimerisation domain superfamily D4K88_RS07665 IPR005311 Penicillin-binding protein, dimerisation domain D4K88_RS07665 IPR012338 Beta-lactamase/transpeptidase-like D4K88_RS07665 IPR017790 Penicillin-binding protein 2 D4K88_RS07670 IPR004872 Lipoprotein NlpA family D4K88_RS07675 IPR013766 Thioredoxin domain D4K88_RS07675 IPR036249 Thioredoxin-like superfamily D4K88_RS07675 IPR019479 Peroxiredoxin, C-terminal D4K88_RS07675 IPR024706 Peroxiredoxin, AhpC-type D4K88_RS07675 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant D4K88_RS07690 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA D4K88_RS07690 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site D4K88_RS07695 IPR006300 Flagellar basal-body rod protein FlgB D4K88_RS07695 IPR019776 Flagellar basal body rod protein, conserved site D4K88_RS07695 IPR001444 Flagellar basal body rod protein, N-terminal D4K88_RS07700 IPR010930 Flagellar basal-body/hook protein, C-terminal domain D4K88_RS07700 IPR001444 Flagellar basal body rod protein, N-terminal D4K88_RS07700 IPR006299 Flagellar basal-body rod protein FlgC D4K88_RS07700 IPR019776 Flagellar basal body rod protein, conserved site D4K88_RS07705 IPR001624 Flagellar hook-basal body complex protein FliE D4K88_RS07715 IPR001460 Penicillin-binding protein, transpeptidase D4K88_RS07715 IPR037532 Peptidoglycan D,D-transpeptidase FtsI D4K88_RS07715 IPR012338 Beta-lactamase/transpeptidase-like D4K88_RS07715 IPR005311 Penicillin-binding protein, dimerisation domain D4K88_RS07715 IPR036138 Penicillin-binding protein, dimerisation domain superfamily D4K88_RS07720 IPR036402 Elongation factor Ts, dimerisation domain superfamily D4K88_RS07720 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation D4K88_RS07720 IPR018101 Translation elongation factor Ts, conserved site D4K88_RS07720 IPR009060 UBA-like superfamily D4K88_RS07720 IPR001816 Translation elongation factor EFTs/EF1B D4K88_RS07725 IPR018130 Ribosomal protein S2, conserved site D4K88_RS07725 IPR001865 Ribosomal protein S2 D4K88_RS07725 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid D4K88_RS07725 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily D4K88_RS07730 IPR011335 Restriction endonuclease type II-like D4K88_RS07730 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type D4K88_RS07730 IPR014152 DNA helicase subunit AddA D4K88_RS07730 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS07730 IPR011604 Exonuclease, phage-type/RecB, C-terminal D4K88_RS07730 IPR014016 UvrD-like helicase, ATP-binding domain D4K88_RS07730 IPR014017 UvrD-like DNA helicase, C-terminal D4K88_RS07730 IPR034739 UvrD/AddA helicase, N-terminal D4K88_RS07730 IPR000212 DNA helicase, UvrD/REP type D4K88_RS07735 IPR023171 Na/H antiporter domain superfamily D4K88_RS07735 IPR004670 Na+/H+ antiporter NhaA D4K88_RS07740 IPR003849 Preprotein translocase YajC D4K88_RS07745 IPR001036 Acriflavin resistance protein D4K88_RS07745 IPR005791 Protein translocase subunit SecD D4K88_RS07745 IPR022645 Protein-export membrane protein SecD/SecF, bacterial D4K88_RS07745 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial D4K88_RS07750 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial D4K88_RS07750 IPR005665 Protein-export membrane protein SecF, bacterial D4K88_RS07750 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site D4K88_RS07750 IPR022645 Protein-export membrane protein SecD/SecF, bacterial D4K88_RS07760 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site D4K88_RS07760 IPR002300 Aminoacyl-tRNA synthetase, class Ia D4K88_RS07760 IPR002302 Leucine-tRNA ligase D4K88_RS07760 IPR025709 Leucyl-tRNA synthetase, editing domain D4K88_RS07760 IPR015413 Methionyl/Leucyl tRNA synthetase D4K88_RS07760 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold D4K88_RS07760 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding D4K88_RS07760 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain D4K88_RS07770 IPR036565 Mur-like, catalytic domain superfamily D4K88_RS07770 IPR004101 Mur ligase, C-terminal D4K88_RS07770 IPR036615 Mur ligase, C-terminal domain superfamily D4K88_RS07770 IPR001645 Folylpolyglutamate synthetase D4K88_RS07770 IPR013221 Mur ligase, central D4K88_RS07770 IPR018109 Folylpolyglutamate synthetase, conserved site D4K88_RS07780 IPR011055 Duplicated hybrid motif D4K88_RS07780 IPR007340 Opacity-associated protein A D4K88_RS07780 IPR016047 Peptidase M23 D4K88_RS07790 IPR014001 Helicase superfamily 1/2, ATP-binding domain D4K88_RS07790 IPR036101 CarD-like/TRCF domain superfamily D4K88_RS07790 IPR004576 Transcription-repair coupling factor D4K88_RS07790 IPR027417 P-loop containing nucleoside triphosphate hydrolase D4K88_RS07790 IPR037235 TRCF-like, C-terminal domain D4K88_RS07790 IPR005118 Transcription-repair-coupling factor, C-terminal domain D4K88_RS07790 IPR001650 Helicase, C-terminal D4K88_RS07790 IPR011545 DEAD/DEAH box helicase domain D4K88_RS07790 IPR041471 UvrB, interaction domain D4K88_RS07790 IPR003711 CarD-like/TRCF domain D4K88_RS07795 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit D4K88_RS07795 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal D4K88_RS07795 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal D4K88_RS07795 IPR006311 Twin-arginine translocation pathway, signal sequence D4K88_RS07795 IPR014349 Rieske iron-sulphur protein D4K88_RS07795 IPR005805 Rieske iron-sulphur protein, C-terminal D4K88_RS07795 IPR017941 Rieske [2Fe-2S] iron-sulphur domain D4K88_RS07795 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily D4K88_RS07800 IPR005798 Cytochrome b/b6, C-terminal D4K88_RS07800 IPR036150 Cytochrome b/b6, C-terminal domain superfamily D4K88_RS07800 IPR005797 Cytochrome b/b6, N-terminal D4K88_RS07800 IPR027387 Cytochrome b/b6-like domain superfamily D4K88_RS07800 IPR030689 Cytochrome b D4K88_RS07800 IPR016174 Di-haem cytochrome, transmembrane D4K88_RS07820 IPR002686 Transposase IS200-like D4K88_RS07820 IPR036515 Transposase IS200-like superfamily D4K88_RS07825 IPR021027 Transposase, putative, helix-turn-helix domain D4K88_RS07825 IPR001959 Probable transposase, IS891/IS1136/IS1341 D4K88_RS07825 IPR010095 Transposase IS605, OrfB, C-terminal D4K88_RS07835 IPR003669 Thymidylate synthase ThyX D4K88_RS07835 IPR036098 Thymidylate synthase ThyX superfamily D4K88_RS07840 IPR035466 GlmS/AgaS, SIS domain 1 D4K88_RS07840 IPR035490 GlmS/FrlB, SIS domain 2 D4K88_RS07840 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising D4K88_RS07840 IPR029055 Nucleophile aminohydrolases, N-terminal D4K88_RS07840 IPR001347 Sugar isomerase (SIS) D4K88_RS07840 IPR017932 Glutamine amidotransferase type 2 domain D4K88_RS07845 IPR019469 Protein of unknown function DUF2443 D4K88_RS07845 IPR038018 Uncharacterised protein HP_1531