locus-tag class description D4K88_RS00005 PF00308 Bacterial dnaA protein D4K88_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix D4K88_RS00020 PF03372 Endonuclease/Exonuclease/phosphatase family D4K88_RS00035 PF04851 Type III restriction enzyme, res subunit D4K88_RS00035 PF00271 Helicase conserved C-terminal domain D4K88_RS00040 PF18273 Type III R-M EcoP15I C-terminal domain D4K88_RS00040 PF01555 DNA methylase D4K88_RS00050 PF04851 Type III restriction enzyme, res subunit D4K88_RS00050 PF08774 VRR-NUC domain D4K88_RS00065 PF07669 Eco57I restriction-modification methylase D4K88_RS00070 PF13274 Protein of unknown function (DUF4065) D4K88_RS00080 PF08529 NusA N-terminal domain D4K88_RS00080 PF13184 NusA-like KH domain D4K88_RS00085 PF03841 L-seryl-tRNA selenium transferase D4K88_RS00105 PF02660 Glycerol-3-phosphate acyltransferase D4K88_RS00110 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase D4K88_RS00110 PF12801 4Fe-4S binding domain D4K88_RS00110 PF13746 4Fe-4S dicluster domain D4K88_RS00115 PF03435 Saccharopine dehydrogenase NADP binding domain D4K88_RS00115 PF16653 Saccharopine dehydrogenase C-terminal domain D4K88_RS00120 PF03616 Sodium/glutamate symporter D4K88_RS00125 PF01872 RibD C-terminal domain D4K88_RS00125 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D4K88_RS00130 PF05175 Methyltransferase small domain D4K88_RS00135 PF00403 Heavy-metal-associated domain D4K88_RS00160 PF01195 Peptidyl-tRNA hydrolase D4K88_RS00165 PF14693 Ribosomal protein TL5, C-terminal domain D4K88_RS00165 PF01386 Ribosomal L25p family D4K88_RS00170 PF00923 Transaldolase/Fructose-6-phosphate aldolase D4K88_RS00175 PF02875 Mur ligase family, glutamate ligase domain D4K88_RS00175 PF08245 Mur ligase middle domain D4K88_RS00185 PF01106 NifU-like domain D4K88_RS00190 PF01384 Phosphate transporter family D4K88_RS00195 PF03471 Transporter associated domain D4K88_RS00195 PF01595 Cyclin M transmembrane N-terminal domain D4K88_RS00195 PF00571 CBS domain D4K88_RS00205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D4K88_RS00220 PF09186 Domain of unknown function (DUF1949) D4K88_RS00220 PF01205 Uncharacterized protein family UPF0029 D4K88_RS00225 PF03653 Uncharacterised protein family (UPF0093) D4K88_RS00230 PF01209 ubiE/COQ5 methyltransferase family D4K88_RS00235 PF02609 Exonuclease VII small subunit D4K88_RS00245 PF02403 Seryl-tRNA synthetase N-terminal domain D4K88_RS00245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D4K88_RS00255 PF13361 UvrD-like helicase C-terminal domain D4K88_RS00255 PF00580 UvrD/REP helicase N-terminal domain D4K88_RS00265 PF02441 Flavoprotein D4K88_RS00270 PF01467 Cytidylyltransferase-like D4K88_RS00275 PF02223 Thymidylate kinase D4K88_RS00285 PF02384 N-6 DNA Methylase D4K88_RS00295 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D4K88_RS00295 PF01367 5'-3' exonuclease, C-terminal SAM fold D4K88_RS00295 PF00476 DNA polymerase family A D4K88_RS00305 PF01063 Amino-transferase class IV D4K88_RS00315 PF02405 Permease MlaE D4K88_RS00320 PF09383 NIL domain D4K88_RS00320 PF00005 ABC transporter D4K88_RS00340 PF00034 Cytochrome c D4K88_RS00340 PF03150 Di-haem cytochrome c peroxidase D4K88_RS00345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D4K88_RS00345 PF14579 Helix-hairpin-helix motif D4K88_RS00345 PF02811 PHP domain D4K88_RS00345 PF07733 Bacterial DNA polymerase III alpha NTPase domain D4K88_RS00350 PF01479 S4 domain D4K88_RS00350 PF00849 RNA pseudouridylate synthase D4K88_RS00355 PF00085 Thioredoxin D4K88_RS00365 PF02169 LPP20 lipoprotein D4K88_RS00390 PF10396 GTP-binding protein TrmE N-terminus D4K88_RS00390 PF12631 MnmE helical domain D4K88_RS00390 PF01926 50S ribosome-binding GTPase D4K88_RS00400 PF02096 60Kd inner membrane protein D4K88_RS00400 PF14849 YidC periplasmic domain D4K88_RS00405 PF01809 Putative membrane protein insertion efficiency factor D4K88_RS00410 PF00825 Ribonuclease P D4K88_RS00415 PF00468 Ribosomal protein L34 D4K88_RS00420 PF02472 Biopolymer transport protein ExbD/TolR D4K88_RS00425 PF01618 MotA/TolQ/ExbB proton channel family D4K88_RS00430 PF01668 SmpB protein D4K88_RS00435 PF00288 GHMP kinases N terminal domain D4K88_RS00440 PF02599 Global regulator protein family D4K88_RS00445 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D4K88_RS00495 PF01842 ACT domain D4K88_RS00495 PF00551 Formyl transferase D4K88_RS00515 PF00398 Ribosomal RNA adenine dimethylase D4K88_RS00520 PF00753 Metallo-beta-lactamase superfamily D4K88_RS00520 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D4K88_RS00520 PF17770 Ribonuclease J C-terminal domain D4K88_RS00525 PF01380 SIS domain D4K88_RS00525 PF00571 CBS domain D4K88_RS00530 PF04055 Radical SAM superfamily D4K88_RS00550 PF01479 S4 domain D4K88_RS00555 PF00133 tRNA synthetases class I (I, L, M and V) D4K88_RS00555 PF08264 Anticodon-binding domain of tRNA D4K88_RS00560 PF00437 Type II/IV secretion system protein D4K88_RS00565 PF18269 T3SS EscN ATPase C-terminal domain D4K88_RS00565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D4K88_RS00570 PF01313 Bacterial export proteins, family 3 D4K88_RS00575 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D4K88_RS00580 PF08019 Phosphoethanolamine transferase EptA/EptB D4K88_RS00580 PF00884 Sulfatase D4K88_RS00600 PF14489 QueF-like protein D4K88_RS00640 PF03631 Virulence factor BrkB D4K88_RS00645 PF06968 Biotin and Thiamin Synthesis associated domain D4K88_RS00645 PF04055 Radical SAM superfamily D4K88_RS00675 PF00491 Arginase family D4K88_RS00680 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D4K88_RS00680 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D4K88_RS00695 PF01513 ATP-NAD kinase D4K88_RS00700 PF02463 RecF/RecN/SMC N terminal domain D4K88_RS00735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D4K88_RS00735 PF00929 Exonuclease D4K88_RS00735 PF14579 Helix-hairpin-helix motif D4K88_RS00735 PF02811 PHP domain D4K88_RS00735 PF11490 DNA polymerase III polC-type N-terminus II D4K88_RS00735 PF14480 DNA polymerase III polC-type N-terminus I D4K88_RS00735 PF07733 Bacterial DNA polymerase III alpha NTPase domain D4K88_RS00740 PF00834 Ribulose-phosphate 3 epimerase family D4K88_RS00745 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D4K88_RS00765 PF01842 ACT domain D4K88_RS00765 PF02153 Prephenate dehydrogenase D4K88_RS00770 PF00004 ATPase family associated with various cellular activities (AAA) D4K88_RS00770 PF05362 Lon protease (S16) C-terminal proteolytic domain D4K88_RS00770 PF02190 ATP-dependent protease La (LON) substrate-binding domain D4K88_RS00775 PF13525 Outer membrane lipoprotein D4K88_RS00780 PF02623 FliW protein D4K88_RS00790 PF07977 FabA-like domain D4K88_RS00795 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D4K88_RS00795 PF00132 Bacterial transferase hexapeptide (six repeats) D4K88_RS00800 PF10431 C-terminal, D2-small domain, of ClpB protein D4K88_RS00800 PF07724 AAA domain (Cdc48 subfamily) D4K88_RS00820 PF01555 DNA methylase D4K88_RS00825 PF01555 DNA methylase D4K88_RS00825 PF18755 Restriction Enzyme Adenine Methylase Associated D4K88_RS00830 PF01555 DNA methylase D4K88_RS00840 PF00486 Transcriptional regulatory protein, C terminal D4K88_RS00840 PF00072 Response regulator receiver domain D4K88_RS00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D4K88_RS00850 PF01256 Carbohydrate kinase D4K88_RS00850 PF03853 YjeF-related protein N-terminus D4K88_RS00855 PF03796 DnaB-like helicase C terminal domain D4K88_RS00855 PF00772 DnaB-like helicase N terminal domain D4K88_RS00865 PF01040 UbiA prenyltransferase family D4K88_RS00880 PF02666 Phosphatidylserine decarboxylase D4K88_RS00885 PF02445 Quinolinate synthetase A protein D4K88_RS00890 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D4K88_RS00890 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D4K88_RS00900 PF18755 Restriction Enzyme Adenine Methylase Associated D4K88_RS00900 PF01555 DNA methylase D4K88_RS00910 PF03572 Peptidase family S41 D4K88_RS00910 PF13180 PDZ domain D4K88_RS00920 PF01553 Acyltransferase D4K88_RS00925 PF03167 Uracil DNA glycosylase superfamily D4K88_RS00935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D4K88_RS00935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D4K88_RS00940 PF00162 Phosphoglycerate kinase D4K88_RS00945 PF01544 CorA-like Mg2+ transporter protein D4K88_RS00950 PF03741 Integral membrane protein TerC family D4K88_RS00960 PF03544 Gram-negative bacterial TonB protein C-terminal D4K88_RS00965 PF02472 Biopolymer transport protein ExbD/TolR D4K88_RS00970 PF01618 MotA/TolQ/ExbB proton channel family D4K88_RS00975 PF01402 Ribbon-helix-helix protein, copG family D4K88_RS00975 PF08753 NikR C terminal nickel binding domain D4K88_RS00980 PF01467 Cytidylyltransferase-like D4K88_RS01005 PF00684 DnaJ central domain D4K88_RS01005 PF01556 DnaJ C terminal domain D4K88_RS01005 PF00226 DnaJ domain D4K88_RS01010 PF03591 AzlC protein D4K88_RS01015 PF05437 Branched-chain amino acid transport protein (AzlD) D4K88_RS01020 PF00873 AcrB/AcrD/AcrF family D4K88_RS01045 PF10415 Fumarase C C-terminus D4K88_RS01045 PF00206 Lyase D4K88_RS01055 PF01351 Ribonuclease HII D4K88_RS01070 PF00338 Ribosomal protein S10p/S20e D4K88_RS01075 PF00297 Ribosomal protein L3 D4K88_RS01080 PF00573 Ribosomal protein L4/L1 family D4K88_RS01085 PF00276 Ribosomal protein L23 D4K88_RS01090 PF00181 Ribosomal Proteins L2, RNA binding domain D4K88_RS01090 PF03947 Ribosomal Proteins L2, C-terminal domain D4K88_RS01095 PF00203 Ribosomal protein S19 D4K88_RS01100 PF00237 Ribosomal protein L22p/L17e D4K88_RS01105 PF07650 KH domain D4K88_RS01105 PF00189 Ribosomal protein S3, C-terminal domain D4K88_RS01110 PF00252 Ribosomal protein L16p/L10e D4K88_RS01115 PF00831 Ribosomal L29 protein D4K88_RS01120 PF00366 Ribosomal protein S17 D4K88_RS01125 PF00238 Ribosomal protein L14p/L23e D4K88_RS01130 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D4K88_RS01130 PF00467 KOW motif D4K88_RS01135 PF00281 Ribosomal protein L5 D4K88_RS01135 PF00673 ribosomal L5P family C-terminus D4K88_RS01140 PF00253 Ribosomal protein S14p/S29e D4K88_RS01145 PF00410 Ribosomal protein S8 D4K88_RS01150 PF00347 Ribosomal protein L6 D4K88_RS01155 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D4K88_RS01160 PF00333 Ribosomal protein S5, N-terminal domain D4K88_RS01160 PF03719 Ribosomal protein S5, C-terminal domain D4K88_RS01165 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D4K88_RS01170 PF00344 SecY translocase D4K88_RS01175 PF00557 Metallopeptidase family M24 D4K88_RS01180 PF01176 Translation initiation factor 1A / IF-1 D4K88_RS01185 PF00444 Ribosomal protein L36 D4K88_RS01190 PF00416 Ribosomal protein S13/S18 D4K88_RS01195 PF00411 Ribosomal protein S11 D4K88_RS01200 PF01479 S4 domain D4K88_RS01200 PF00163 Ribosomal protein S4/S9 N-terminal domain D4K88_RS01205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D4K88_RS01205 PF01000 RNA polymerase Rpb3/RpoA insert domain D4K88_RS01205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D4K88_RS01210 PF01196 Ribosomal protein L17 D4K88_RS01240 PF03070 TENA/THI-4/PQQC family D4K88_RS01245 PF04264 YceI-like domain D4K88_RS01255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D4K88_RS01275 PF02086 D12 class N6 adenine-specific DNA methyltransferase D4K88_RS01290 PF00425 chorismate binding enzyme D4K88_RS01290 PF04715 Anthranilate synthase component I, N terminal region D4K88_RS01295 PF00117 Glutamine amidotransferase class-I D4K88_RS01300 PF00591 Glycosyl transferase family, a/b domain D4K88_RS01300 PF02885 Glycosyl transferase family, helical bundle domain D4K88_RS01305 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D4K88_RS01305 PF00218 Indole-3-glycerol phosphate synthase D4K88_RS01310 PF00291 Pyridoxal-phosphate dependent enzyme D4K88_RS01315 PF00290 Tryptophan synthase alpha chain D4K88_RS01325 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D4K88_RS01325 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D4K88_RS01325 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D4K88_RS01325 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D4K88_RS01335 PF00361 Proton-conducting membrane transporter D4K88_RS01340 PF00361 Proton-conducting membrane transporter D4K88_RS01340 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus D4K88_RS01345 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D4K88_RS01345 PF00361 Proton-conducting membrane transporter D4K88_RS01350 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D4K88_RS01355 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D4K88_RS01360 PF12838 4Fe-4S dicluster domain D4K88_RS01365 PF00146 NADH dehydrogenase D4K88_RS01370 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D4K88_RS01370 PF12838 4Fe-4S dicluster domain D4K88_RS01370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D4K88_RS01370 PF01568 Molydopterin dinucleotide binding domain D4K88_RS01370 PF00384 Molybdopterin oxidoreductase D4K88_RS01385 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D4K88_RS01390 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D4K88_RS01395 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D4K88_RS01400 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D4K88_RS01405 PF02146 Sir2 family D4K88_RS01415 PF00156 Phosphoribosyl transferase domain D4K88_RS01420 PF01765 Ribosome recycling factor D4K88_RS01425 PF03840 Preprotein translocase SecG subunit D4K88_RS01435 PF00579 tRNA synthetases class I (W and Y) D4K88_RS01440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D4K88_RS01445 PF00528 Binding-protein-dependent transport system inner membrane component D4K88_RS01455 PF08501 Shikimate dehydrogenase substrate binding domain D4K88_RS01460 PF00773 RNB domain D4K88_RS01465 PF06144 DNA polymerase III, delta subunit D4K88_RS01470 PF01250 Ribosomal protein S6 D4K88_RS01475 PF00436 Single-strand binding protein family D4K88_RS01480 PF01084 Ribosomal protein S18 D4K88_RS01495 PF01411 tRNA synthetases class II (A) D4K88_RS01495 PF02272 DHHA1 domain D4K88_RS01495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D4K88_RS01500 PF02545 Maf-like protein D4K88_RS01510 PF00795 Carbon-nitrogen hydrolase D4K88_RS01515 PF00117 Glutamine amidotransferase class-I D4K88_RS01515 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D4K88_RS01530 PF00892 EamA-like transporter family D4K88_RS01540 PF00809 Pterin binding enzyme D4K88_RS01545 PF12169 DNA polymerase III subunits gamma and tau domain III D4K88_RS01555 PF00696 Amino acid kinase family D4K88_RS01555 PF01842 ACT domain D4K88_RS01555 PF13840 ACT domain D4K88_RS01560 PF00293 NUDIX domain D4K88_RS01565 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D4K88_RS01570 PF04055 Radical SAM superfamily D4K88_RS01575 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D4K88_RS01595 PF01255 Putative undecaprenyl diphosphate synthase D4K88_RS01600 PF00005 ABC transporter D4K88_RS01610 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D4K88_RS01610 PF02843 Phosphoribosylglycinamide synthetase, C domain D4K88_RS01610 PF02844 Phosphoribosylglycinamide synthetase, N domain D4K88_RS01620 PF04453 LPS transport system D D4K88_RS01620 PF03968 OstA-like protein D4K88_RS01630 PF00575 S1 RNA binding domain D4K88_RS01630 PF00013 KH domain D4K88_RS01630 PF01138 3' exoribonuclease family, domain 1 D4K88_RS01630 PF03725 3' exoribonuclease family, domain 2 D4K88_RS01635 PF00137 ATP synthase subunit C D4K88_RS01650 PF00132 Bacterial transferase hexapeptide (six repeats) D4K88_RS01660 PF02086 D12 class N6 adenine-specific DNA methyltransferase D4K88_RS01670 PF00664 ABC transporter transmembrane region D4K88_RS01670 PF00005 ABC transporter D4K88_RS01695 PF00009 Elongation factor Tu GTP binding domain D4K88_RS01695 PF03143 Elongation factor Tu C-terminal domain D4K88_RS01695 PF03144 Elongation factor Tu domain 2 D4K88_RS01700 PF00471 Ribosomal protein L33 D4K88_RS01715 PF02357 Transcription termination factor nusG D4K88_RS01720 PF00298 Ribosomal protein L11, RNA binding domain D4K88_RS01720 PF03946 Ribosomal protein L11, N-terminal domain D4K88_RS01725 PF00687 Ribosomal protein L1p/L10e family D4K88_RS01730 PF00466 Ribosomal protein L10 D4K88_RS01735 PF00542 Ribosomal protein L7/L12 C-terminal domain D4K88_RS01735 PF16320 Ribosomal protein L7/L12 dimerisation domain D4K88_RS01745 PF05000 RNA polymerase Rpb1, domain 4 D4K88_RS01745 PF00562 RNA polymerase Rpb2, domain 6 D4K88_RS01745 PF10385 RNA polymerase beta subunit external 1 domain D4K88_RS01745 PF04560 RNA polymerase Rpb2, domain 7 D4K88_RS01745 PF04983 RNA polymerase Rpb1, domain 3 D4K88_RS01745 PF04565 RNA polymerase Rpb2, domain 3 D4K88_RS01745 PF00623 RNA polymerase Rpb1, domain 2 D4K88_RS01745 PF04997 RNA polymerase Rpb1, domain 1 D4K88_RS01745 PF04561 RNA polymerase Rpb2, domain 2 D4K88_RS01745 PF04563 RNA polymerase beta subunit D4K88_RS01745 PF04998 RNA polymerase Rpb1, domain 5 D4K88_RS01750 PF00164 Ribosomal protein S12/S23 D4K88_RS01755 PF00177 Ribosomal protein S7p/S5e D4K88_RS01760 PF00009 Elongation factor Tu GTP binding domain D4K88_RS01760 PF03144 Elongation factor Tu domain 2 D4K88_RS01760 PF14492 Elongation Factor G, domain II D4K88_RS01760 PF00679 Elongation factor G C-terminus D4K88_RS01760 PF03764 Elongation factor G, domain IV D4K88_RS01765 PF00248 Aldo/keto reductase family D4K88_RS01780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D4K88_RS01785 PF13393 Histidyl-tRNA synthetase D4K88_RS01785 PF03129 Anticodon binding domain D4K88_RS01790 PF02774 Semialdehyde dehydrogenase, dimerisation domain D4K88_RS01790 PF01118 Semialdehyde dehydrogenase, NAD binding domain D4K88_RS01805 PF00194 Eukaryotic-type carbonic anhydrase D4K88_RS01810 PF07690 Major Facilitator Superfamily D4K88_RS01825 PF00999 Sodium/hydrogen exchanger family D4K88_RS01825 PF02080 TrkA-C domain D4K88_RS01825 PF02254 TrkA-N domain D4K88_RS01830 PF01171 PP-loop family D4K88_RS01835 PF07690 Major Facilitator Superfamily D4K88_RS01845 PF01773 Na+ dependent nucleoside transporter N-terminus D4K88_RS01845 PF07662 Na+ dependent nucleoside transporter C-terminus D4K88_RS01850 PF01676 Metalloenzyme superfamily D4K88_RS01855 PF01048 Phosphorylase superfamily D4K88_RS01870 PF00860 Permease family D4K88_RS01875 PF07690 Major Facilitator Superfamily D4K88_RS01890 PF00005 ABC transporter D4K88_RS01895 PF00528 Binding-protein-dependent transport system inner membrane component D4K88_RS01900 PF00528 Binding-protein-dependent transport system inner membrane component D4K88_RS01905 PF13722 5TM C-terminal transporter carbon starvation CstA D4K88_RS01905 PF02554 Carbon starvation protein CstA D4K88_RS01915 PF00342 Phosphoglucose isomerase D4K88_RS01925 PF07992 Pyridine nucleotide-disulphide oxidoreductase D4K88_RS01940 PF00258 Flavodoxin D4K88_RS01945 PF02130 Uncharacterized protein family UPF0054 D4K88_RS01950 PF02661 Fic/DOC family D4K88_RS01955 PF03807 NADP oxidoreductase coenzyme F420-dependent D4K88_RS01955 PF14748 Pyrroline-5-carboxylate reductase dimerisation D4K88_RS01970 PF04101 Glycosyltransferase family 28 C-terminal domain D4K88_RS01970 PF03033 Glycosyltransferase family 28 N-terminal domain D4K88_RS01975 PF02623 FliW protein D4K88_RS01980 PF00133 tRNA synthetases class I (I, L, M and V) D4K88_RS01980 PF08264 Anticodon-binding domain of tRNA D4K88_RS01980 PF10458 Valyl tRNA synthetase tRNA binding arm D4K88_RS01985 PF02881 SRP54-type protein, helical bundle domain D4K88_RS01985 PF02978 Signal peptide binding domain D4K88_RS01985 PF00448 SRP54-type protein, GTPase domain D4K88_RS01990 PF00886 Ribosomal protein S16 D4K88_RS02000 PF05239 PRC-barrel domain D4K88_RS02000 PF01782 RimM N-terminal domain D4K88_RS02005 PF01746 tRNA (Guanine-1)-methyltransferase D4K88_RS02010 PF01245 Ribosomal protein L19 D4K88_RS02040 PF00551 Formyl transferase D4K88_RS02040 PF02911 Formyl transferase, C-terminal domain D4K88_RS02045 PF02237 Biotin protein ligase C terminal domain D4K88_RS02045 PF03099 Biotin/lipoate A/B protein ligase family D4K88_RS02045 PF03309 Type III pantothenate kinase D4K88_RS02050 PF13614 AAA domain D4K88_RS02055 PF17762 HTH domain found in ParB protein D4K88_RS02055 PF02195 ParB-like nuclease domain D4K88_RS02065 PF00430 ATP synthase B/B' CF(0) D4K88_RS02075 PF02874 ATP synthase alpha/beta family, beta-barrel domain D4K88_RS02075 PF00306 ATP synthase alpha/beta chain, C terminal domain D4K88_RS02075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D4K88_RS02080 PF00231 ATP synthase D4K88_RS02085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D4K88_RS02085 PF02874 ATP synthase alpha/beta family, beta-barrel domain D4K88_RS02090 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D4K88_RS02095 PF01618 MotA/TolQ/ExbB proton channel family D4K88_RS02100 PF02472 Biopolymer transport protein ExbD/TolR D4K88_RS02110 PF07676 WD40-like Beta Propeller Repeat D4K88_RS02115 PF00691 OmpA family D4K88_RS02125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D4K88_RS02140 PF00145 C-5 cytosine-specific DNA methylase D4K88_RS02150 PF00460 Flagella basal body rod protein D4K88_RS02150 PF07559 Flagellar basal body protein FlaE D4K88_RS02150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D4K88_RS02165 PF01797 Transposase IS200 like D4K88_RS02170 PF01385 Probable transposase D4K88_RS02170 PF12323 Helix-turn-helix domain D4K88_RS02170 PF07282 Putative transposase DNA-binding domain D4K88_RS02205 PF02075 Crossover junction endodeoxyribonuclease RuvC D4K88_RS02220 PF06628 Catalase-related immune-responsive D4K88_RS02220 PF00199 Catalase D4K88_RS02235 PF03831 PhnA domain D4K88_RS02235 PF08274 PhnA Zinc-Ribbon D4K88_RS02245 PF02611 CDP-diacylglycerol pyrophosphatase D4K88_RS02250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D4K88_RS02250 PF00460 Flagella basal body rod protein D4K88_RS02250 PF07196 Flagellin hook IN motif D4K88_RS02250 PF07559 Flagellar basal body protein FlaE D4K88_RS02255 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D4K88_RS02265 PF02684 Lipid-A-disaccharide synthetase D4K88_RS02270 PF03449 Transcription elongation factor, N-terminal D4K88_RS02270 PF01272 Transcription elongation factor, GreA/GreB, C-term D4K88_RS02275 PF00692 dUTPase D4K88_RS02285 PF15437 Plasminogen-binding protein pgbA C-terminal D4K88_RS02290 PF03309 Type III pantothenate kinase D4K88_RS02305 PF01370 NAD dependent epimerase/dehydratase family D4K88_RS02310 PF01467 Cytidylyltransferase-like D4K88_RS02310 PF00294 pfkB family carbohydrate kinase D4K88_RS02315 PF13580 SIS domain D4K88_RS02325 PF00478 IMP dehydrogenase / GMP reductase domain D4K88_RS02330 PF00005 ABC transporter D4K88_RS02330 PF12848 ABC transporter D4K88_RS02340 PF01569 PAP2 superfamily D4K88_RS02350 PF02384 N-6 DNA Methylase D4K88_RS02350 PF12161 HsdM N-terminal domain D4K88_RS02355 PF01420 Type I restriction modification DNA specificity domain D4K88_RS02360 PF12008 Type I restriction and modification enzyme - subunit R C terminal D4K88_RS02360 PF18766 SWI2/SNF2 ATPase D4K88_RS02360 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D4K88_RS02365 PF02110 Hydroxyethylthiazole kinase family D4K88_RS02370 PF08543 Phosphomethylpyrimidine kinase D4K88_RS02375 PF02581 Thiamine monophosphate synthase D4K88_RS02385 PF04127 DNA / pantothenate metabolism flavoprotein D4K88_RS02385 PF02441 Flavoprotein D4K88_RS02390 PF02719 Polysaccharide biosynthesis protein D4K88_RS02415 PF00216 Bacterial DNA-binding protein D4K88_RS02420 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D4K88_RS02420 PF01926 50S ribosome-binding GTPase D4K88_RS02435 PF01121 Dephospho-CoA kinase D4K88_RS02440 PF01425 Amidase D4K88_RS02445 PF00571 CBS domain D4K88_RS02445 PF00478 IMP dehydrogenase / GMP reductase domain D4K88_RS02450 PF00119 ATP synthase A chain D4K88_RS02455 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) D4K88_RS02465 PF07992 Pyridine nucleotide-disulphide oxidoreductase D4K88_RS02470 PF00085 Thioredoxin D4K88_RS02475 PF02021 Uncharacterised protein family UPF0102 D4K88_RS02480 PF01842 ACT domain D4K88_RS02480 PF03447 Homoserine dehydrogenase, NAD binding domain D4K88_RS02480 PF00742 Homoserine dehydrogenase D4K88_RS02485 PF01541 GIY-YIG catalytic domain D4K88_RS02485 PF02151 UvrB/uvrC motif D4K88_RS02485 PF08459 UvrC Helix-hairpin-helix N-terminal D4K88_RS02500 PF00005 ABC transporter D4K88_RS02500 PF00571 CBS domain D4K88_RS02505 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D4K88_RS02515 PF00691 OmpA family D4K88_RS02515 PF13677 Membrane MotB of proton-channel complex MotA/MotB D4K88_RS02520 PF01618 MotA/TolQ/ExbB proton channel family D4K88_RS02525 PF00899 ThiF family D4K88_RS02530 PF00753 Metallo-beta-lactamase superfamily D4K88_RS02550 PF03748 Flagellar basal body-associated protein FliL D4K88_RS02555 PF01648 4'-phosphopantetheinyl transferase superfamily D4K88_RS02575 PF00925 GTP cyclohydrolase II D4K88_RS02575 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D4K88_RS02585 PF00925 GTP cyclohydrolase II D4K88_RS02595 PF02391 MoaE protein D4K88_RS02600 PF00994 Probable molybdopterin binding domain D4K88_RS02605 PF01967 MoaC family D4K88_RS02610 PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) D4K88_RS02620 PF05697 Bacterial trigger factor protein (TF) D4K88_RS02620 PF05698 Bacterial trigger factor protein (TF) C-terminus D4K88_RS02620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D4K88_RS02625 PF00574 Clp protease D4K88_RS02630 PF01327 Polypeptide deformylase D4K88_RS02635 PF13335 Magnesium chelatase, subunit ChlI C-terminal D4K88_RS02635 PF01078 Magnesium chelatase, subunit ChlI D4K88_RS02640 PF00403 Heavy-metal-associated domain D4K88_RS02645 PF01420 Type I restriction modification DNA specificity domain D4K88_RS02660 PF07517 SecA DEAD-like domain D4K88_RS02660 PF01043 SecA preprotein cross-linking domain D4K88_RS02660 PF02810 SEC-C motif D4K88_RS02660 PF07516 SecA Wing and Scaffold domain D4K88_RS02665 PF03548 Outer membrane lipoprotein carrier protein LolA D4K88_RS02695 PF06434 Aconitate hydratase 2 N-terminus D4K88_RS02695 PF11791 Aconitate B N-terminal domain D4K88_RS02695 PF00330 Aconitase family (aconitate hydratase) D4K88_RS02705 PF00696 Amino acid kinase family D4K88_RS02710 PF01192 RNA polymerase Rpb6 D4K88_RS02715 PF13291 ACT domain D4K88_RS02715 PF04607 Region found in RelA / SpoT proteins D4K88_RS02715 PF02824 TGS domain D4K88_RS02720 PF01479 S4 domain D4K88_RS02720 PF00579 tRNA synthetases class I (W and Y) D4K88_RS02730 PF01520 N-acetylmuramoyl-L-alanine amidase D4K88_RS02740 PF01312 FlhB HrpN YscU SpaS Family D4K88_RS02745 PF12804 MobA-like NTP transferase domain D4K88_RS02750 PF06463 Molybdenum Cofactor Synthesis C D4K88_RS02750 PF04055 Radical SAM superfamily D4K88_RS02760 PF00448 SRP54-type protein, GTPase domain D4K88_RS02775 PF12072 Domain of unknown function (DUF3552) D4K88_RS02775 PF00013 KH domain D4K88_RS02775 PF01966 HD domain D4K88_RS02780 PF01554 MatE D4K88_RS02785 PF03553 Na+/H+ antiporter family D4K88_RS02785 PF13726 Na+-H+ antiporter family D4K88_RS02790 PF00795 Carbon-nitrogen hydrolase D4K88_RS02800 PF00899 ThiF family D4K88_RS02800 PF00581 Rhodanese-like domain D4K88_RS02810 PF02561 Flagellar protein FliS D4K88_RS02835 PF00005 ABC transporter D4K88_RS02835 PF09383 NIL domain D4K88_RS02840 PF02390 Putative methyltransferase D4K88_RS02850 PF01479 S4 domain D4K88_RS02850 PF00849 RNA pseudouridylate synthase D4K88_RS02855 PF01926 50S ribosome-binding GTPase D4K88_RS02865 PF01098 Cell cycle protein D4K88_RS02875 PF14572 Phosphoribosyl synthetase-associated domain D4K88_RS02875 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D4K88_RS02880 PF01230 HIT domain D4K88_RS02885 PF08245 Mur ligase middle domain D4K88_RS02885 PF02875 Mur ligase family, glutamate ligase domain D4K88_RS02885 PF01225 Mur ligase family, catalytic domain D4K88_RS02895 PF07478 D-ala D-ala ligase C-terminus D4K88_RS02895 PF01820 D-ala D-ala ligase N-terminus D4K88_RS02900 PF04608 Phosphatidylglycerophosphatase A D4K88_RS02905 PF00266 Aminotransferase class-V D4K88_RS02910 PF00156 Phosphoribosyl transferase domain D4K88_RS02915 PF04055 Radical SAM superfamily D4K88_RS02915 PF00919 Uncharacterized protein family UPF0004 D4K88_RS02945 PF01171 PP-loop family D4K88_RS02950 PF01207 Dihydrouridine synthase (Dus) D4K88_RS02965 PF17763 Glutaminase/Asparaginase C-terminal domain D4K88_RS02965 PF00710 Asparaginase, N-terminal D4K88_RS02970 PF03605 Anaerobic c4-dicarboxylate membrane transporter D4K88_RS02995 PF01810 LysE type translocator D4K88_RS03000 PF12169 DNA polymerase III subunits gamma and tau domain III D4K88_RS03000 PF12170 DNA polymerase III tau subunit V interacting with alpha D4K88_RS03010 PF12399 Branched-chain amino acid ATP-binding cassette transporter D4K88_RS03010 PF00005 ABC transporter D4K88_RS03015 PF04552 Sigma-54, DNA binding domain D4K88_RS03015 PF00309 Sigma-54 factor, Activator interacting domain (AID) D4K88_RS03015 PF04963 Sigma-54 factor, core binding domain D4K88_RS03020 PF12728 Helix-turn-helix domain D4K88_RS03020 PF02661 Fic/DOC family D4K88_RS03035 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase D4K88_RS03045 PF01795 MraW methylase family D4K88_RS03055 PF17755 UvrA DNA-binding domain D4K88_RS03055 PF17760 UvrA interaction domain D4K88_RS03055 PF00005 ABC transporter D4K88_RS03065 PF00072 Response regulator receiver domain D4K88_RS03065 PF00158 Sigma-54 interaction domain D4K88_RS03075 PF00521 DNA gyrase/topoisomerase IV, subunit A D4K88_RS03075 PF03989 DNA gyrase C-terminal domain, beta-propeller D4K88_RS03080 PF01219 Prokaryotic diacylglycerol kinase D4K88_RS03095 PF08882 Acetone carboxylase gamma subunit D4K88_RS03100 PF02538 Hydantoinase B/oxoprolinase D4K88_RS03105 PF05378 Hydantoinase/oxoprolinase N-terminal region D4K88_RS03105 PF01968 Hydantoinase/oxoprolinase D4K88_RS03115 PF02667 Short chain fatty acid transporter D4K88_RS03120 PF01144 Coenzyme A transferase D4K88_RS03125 PF01144 Coenzyme A transferase D4K88_RS03130 PF00108 Thiolase, N-terminal domain D4K88_RS03130 PF02803 Thiolase, C-terminal domain D4K88_RS03140 PF07664 Ferrous iron transport protein B C terminus D4K88_RS03140 PF02421 Ferrous iron transport protein B D4K88_RS03140 PF07670 Nucleoside recognition D4K88_RS03150 PF00813 FliP family D4K88_RS03160 PF12804 MobA-like NTP transferase domain D4K88_RS03160 PF14602 Hexapeptide repeat of succinyl-transferase D4K88_RS03175 PF00317 Ribonucleotide reductase, all-alpha domain D4K88_RS03175 PF03477 ATP cone domain D4K88_RS03175 PF02867 Ribonucleotide reductase, barrel domain D4K88_RS03185 PF01925 Sulfite exporter TauE/SafE D4K88_RS03190 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D4K88_RS03190 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D4K88_RS03195 PF00589 Phage integrase family D4K88_RS03195 PF18644 Phage integrase SAM-like domain D4K88_RS03210 PF00155 Aminotransferase class I and II D4K88_RS03230 PF02754 Cysteine-rich domain D4K88_RS03235 PF04055 Radical SAM superfamily D4K88_RS03235 PF06969 HemN C-terminal domain D4K88_RS03240 PF10788 Protein of unknown function (DUF2603) D4K88_RS03245 PF01264 Chorismate synthase D4K88_RS03250 PF14622 Ribonuclease-III-like D4K88_RS03250 PF00035 Double-stranded RNA binding motif D4K88_RS03255 PF00075 RNase H D4K88_RS03270 PF02934 GatB/GatE catalytic domain D4K88_RS03270 PF02637 GatB domain D4K88_RS03280 PF04055 Radical SAM superfamily D4K88_RS03285 PF07244 Surface antigen variable number repeat D4K88_RS03285 PF01103 Surface antigen D4K88_RS03290 PF04055 Radical SAM superfamily D4K88_RS03295 PF00210 Ferritin-like domain D4K88_RS03315 PF00206 Lyase D4K88_RS03315 PF10415 Fumarase C C-terminus D4K88_RS03320 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D4K88_RS03330 PF00483 Nucleotidyl transferase D4K88_RS03335 PF01464 Transglycosylase SLT domain D4K88_RS03335 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D4K88_RS03345 PF00749 tRNA synthetases class I (E and Q), catalytic domain D4K88_RS03350 PF00881 Nitroreductase family D4K88_RS03355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D4K88_RS03355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D4K88_RS03365 PF06508 Queuosine biosynthesis protein QueC D4K88_RS03390 PF01750 Hydrogenase maturation protease D4K88_RS03395 PF01292 Prokaryotic cytochrome b561 D4K88_RS03400 PF00374 Nickel-dependent hydrogenase D4K88_RS03405 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D4K88_RS03405 PF10518 TAT (twin-arginine translocation) pathway signal sequence D4K88_RS03405 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D4K88_RS03410 PF02525 Flavodoxin-like fold D4K88_RS03425 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle D4K88_RS03425 PF14602 Hexapeptide repeat of succinyl-transferase D4K88_RS03430 PF04551 GcpE protein D4K88_RS03435 PF00155 Aminotransferase class I and II D4K88_RS03440 PF01225 Mur ligase family, catalytic domain D4K88_RS03440 PF02875 Mur ligase family, glutamate ligase domain D4K88_RS03440 PF08245 Mur ligase middle domain D4K88_RS03450 PF01713 Smr domain D4K88_RS03450 PF00488 MutS domain V D4K88_RS03455 PF00719 Inorganic pyrophosphatase D4K88_RS03475 PF00152 tRNA synthetases class II (D, K and N) D4K88_RS03475 PF02938 GAD domain D4K88_RS03475 PF01336 OB-fold nucleic acid binding domain D4K88_RS03480 PF00072 Response regulator receiver domain D4K88_RS03480 PF01584 CheW-like domain D4K88_RS03485 PF03120 NAD-dependent DNA ligase OB-fold domain D4K88_RS03485 PF00533 BRCA1 C Terminus (BRCT) domain D4K88_RS03485 PF01653 NAD-dependent DNA ligase adenylation domain D4K88_RS03495 PF00005 ABC transporter D4K88_RS03520 PF00873 AcrB/AcrD/AcrF family D4K88_RS03535 PF01208 Uroporphyrinogen decarboxylase (URO-D) D4K88_RS03550 PF07196 Flagellin hook IN motif D4K88_RS03550 PF00669 Bacterial flagellin N-terminal helical region D4K88_RS03550 PF00700 Bacterial flagellin C-terminal helical region D4K88_RS03565 PF00672 HAMP domain D4K88_RS03565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D4K88_RS03565 PF12729 Four helix bundle sensory module for signal transduction D4K88_RS03570 PF00155 Aminotransferase class I and II D4K88_RS03575 PF00905 Penicillin binding protein transpeptidase domain D4K88_RS03575 PF00912 Transglycosylase D4K88_RS03605 PF01555 DNA methylase D4K88_RS03605 PF18273 Type III R-M EcoP15I C-terminal domain D4K88_RS03610 PF08774 VRR-NUC domain D4K88_RS03610 PF04851 Type III restriction enzyme, res subunit D4K88_RS03620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D4K88_RS03625 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D4K88_RS03625 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D4K88_RS03625 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D4K88_RS03645 PF04023 FeoA domain D4K88_RS03650 PF00730 HhH-GPD superfamily base excision DNA repair protein D4K88_RS03650 PF00633 Helix-hairpin-helix motif D4K88_RS03655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D4K88_RS03655 PF04509 CheC-like family D4K88_RS03690 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D4K88_RS03690 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D4K88_RS03695 PF10502 Signal peptidase, peptidase S26 D4K88_RS03700 PF02163 Peptidase family M50 D4K88_RS03705 PF02502 Ribose/Galactose Isomerase D4K88_RS03715 PF00156 Phosphoribosyl transferase domain D4K88_RS03725 PF02789 Cytosol aminopeptidase family, N-terminal domain D4K88_RS03725 PF00883 Cytosol aminopeptidase family, catalytic domain D4K88_RS03730 PF06071 Protein of unknown function (DUF933) D4K88_RS03730 PF01926 50S ribosome-binding GTPase D4K88_RS03740 PF01594 AI-2E family transporter D4K88_RS03745 PF01678 Diaminopimelate epimerase D4K88_RS03750 PF04224 Protein of unknown function, DUF417 D4K88_RS03765 PF01165 Ribosomal protein S21 D4K88_RS03775 PF00550 Phosphopantetheine attachment site D4K88_RS03780 PF02801 Beta-ketoacyl synthase, C-terminal domain D4K88_RS03780 PF00109 Beta-ketoacyl synthase, N-terminal domain D4K88_RS03785 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D4K88_RS03810 PF08032 RNA 2'-O ribose methyltransferase substrate binding D4K88_RS03810 PF00588 SpoU rRNA Methylase family D4K88_RS03815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D4K88_RS03820 PF01197 Ribosomal protein L31 D4K88_RS03825 PF07498 Rho termination factor, N-terminal domain D4K88_RS03825 PF07497 Rho termination factor, RNA-binding domain D4K88_RS03825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D4K88_RS03830 PF01177 Asp/Glu/Hydantoin racemase D4K88_RS03845 PF07650 KH domain D4K88_RS03845 PF01926 50S ribosome-binding GTPase D4K88_RS03850 PF07724 AAA domain (Cdc48 subfamily) D4K88_RS03850 PF10431 C-terminal, D2-small domain, of ClpB protein D4K88_RS03855 PF00227 Proteasome subunit D4K88_RS03860 PF01281 Ribosomal protein L9, N-terminal domain D4K88_RS03860 PF03948 Ribosomal protein L9, C-terminal domain D4K88_RS03870 PF00120 Glutamine synthetase, catalytic domain D4K88_RS03870 PF03951 Glutamine synthetase, beta-Grasp domain D4K88_RS03880 PF01113 Dihydrodipicolinate reductase, N-terminus D4K88_RS03880 PF05173 Dihydrodipicolinate reductase, C-terminus D4K88_RS03885 PF01565 FAD binding domain D4K88_RS03885 PF02913 FAD linked oxidases, C-terminal domain D4K88_RS03890 PF15436 Plasminogen-binding protein pgbA N-terminal D4K88_RS03890 PF15437 Plasminogen-binding protein pgbA C-terminal D4K88_RS03900 PF01464 Transglycosylase SLT domain D4K88_RS03900 PF01551 Peptidase family M23 D4K88_RS03900 PF10145 Phage-related minor tail protein D4K88_RS03915 PF00204 DNA gyrase B D4K88_RS03915 PF00986 DNA gyrase B subunit, carboxyl terminus D4K88_RS03915 PF01751 Toprim domain D4K88_RS03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D4K88_RS03920 PF02768 DNA polymerase III beta subunit, C-terminal domain D4K88_RS03920 PF00712 DNA polymerase III beta subunit, N-terminal domain D4K88_RS03920 PF02767 DNA polymerase III beta subunit, central domain D4K88_RS03925 PF02253 Phospholipase A1 D4K88_RS03930 PF00209 Sodium:neurotransmitter symporter family D4K88_RS03935 PF00209 Sodium:neurotransmitter symporter family D4K88_RS03940 PF03061 Thioesterase superfamily D4K88_RS03945 PF04359 Protein of unknown function (DUF493) D4K88_RS03950 PF02875 Mur ligase family, glutamate ligase domain D4K88_RS03950 PF08245 Mur ligase middle domain D4K88_RS03955 PF00953 Glycosyl transferase family 4 D4K88_RS03955 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D4K88_RS03965 PF00830 Ribosomal L28 family D4K88_RS04020 PF00145 C-5 cytosine-specific DNA methylase D4K88_RS04040 PF00679 Elongation factor G C-terminus D4K88_RS04040 PF03144 Elongation factor Tu domain 2 D4K88_RS04040 PF00009 Elongation factor Tu GTP binding domain D4K88_RS04050 PF02384 N-6 DNA Methylase D4K88_RS04060 PF00749 tRNA synthetases class I (E and Q), catalytic domain D4K88_RS04065 PF00005 ABC transporter D4K88_RS04065 PF08402 TOBE domain D4K88_RS04070 PF00528 Binding-protein-dependent transport system inner membrane component D4K88_RS04095 PF02254 TrkA-N domain D4K88_RS04095 PF00999 Sodium/hydrogen exchanger family D4K88_RS04150 PF17941 Polyphosphate kinase C-terminal domain 1 D4K88_RS04150 PF13089 Polyphosphate kinase N-terminal domain D4K88_RS04150 PF13090 Polyphosphate kinase C-terminal domain 2 D4K88_RS04150 PF02503 Polyphosphate kinase middle domain D4K88_RS04155 PF01180 Dihydroorotate dehydrogenase D4K88_RS04165 PF00701 Dihydrodipicolinate synthetase family D4K88_RS04180 PF01066 CDP-alcohol phosphatidyltransferase D4K88_RS04185 PF00324 Amino acid permease D4K88_RS04190 PF13180 PDZ domain D4K88_RS04190 PF17820 PDZ domain D4K88_RS04195 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D4K88_RS04195 PF02542 YgbB family D4K88_RS04200 PF00486 Transcriptional regulatory protein, C terminal D4K88_RS04200 PF00072 Response regulator receiver domain D4K88_RS04210 PF00476 DNA polymerase family A D4K88_RS04210 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D4K88_RS04210 PF01367 5'-3' exonuclease, C-terminal SAM fold D4K88_RS04210 PF01612 3'-5' exonuclease D4K88_RS04215 PF01797 Transposase IS200 like D4K88_RS04220 PF07282 Putative transposase DNA-binding domain D4K88_RS04220 PF01385 Probable transposase D4K88_RS04220 PF12323 Helix-turn-helix domain D4K88_RS04230 PF01556 DnaJ C terminal domain D4K88_RS04230 PF00226 DnaJ domain D4K88_RS04235 PF13411 MerR HTH family regulatory protein D4K88_RS04240 PF01661 Macro domain D4K88_RS04240 PF16193 AAA C-terminal domain D4K88_RS04240 PF05496 Holliday junction DNA helicase RuvB P-loop domain D4K88_RS04240 PF12002 MgsA AAA+ ATPase C terminal D4K88_RS04245 PF01475 Ferric uptake regulator family D4K88_RS04260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D4K88_RS04260 PF04509 CheC-like family D4K88_RS04265 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D4K88_RS04265 PF02154 Flagellar motor switch protein FliM D4K88_RS04270 PF04542 Sigma-70 region 2 D4K88_RS04270 PF04539 Sigma-70 region 3 D4K88_RS04270 PF04545 Sigma-70, region 4 D4K88_RS04280 PF10609 NUBPL iron-transfer P-loop NTPase D4K88_RS04285 PF00448 SRP54-type protein, GTPase domain D4K88_RS04290 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D4K88_RS04295 PF00557 Metallopeptidase family M24 D4K88_RS04295 PF01321 Creatinase/Prolidase N-terminal domain D4K88_RS04300 PF01220 Dehydroquinase class II D4K88_RS04310 PF00312 Ribosomal protein S15 D4K88_RS04315 PF00771 FHIPEP family D4K88_RS04325 PF00072 Response regulator receiver domain D4K88_RS04325 PF00486 Transcriptional regulatory protein, C terminal D4K88_RS04330 PF00149 Calcineurin-like phosphoesterase D4K88_RS04340 PF13193 AMP-binding enzyme C-terminal domain D4K88_RS04340 PF16177 Acetyl-coenzyme A synthetase N-terminus D4K88_RS04340 PF00501 AMP-binding enzyme D4K88_RS04345 PF17384 RimP C-terminal SH3 domain D4K88_RS04345 PF02576 RimP N-terminal domain D4K88_RS04350 PF02033 Ribosome-binding factor A D4K88_RS04355 PF00009 Elongation factor Tu GTP binding domain D4K88_RS04355 PF11987 Translation-initiation factor 2 D4K88_RS04355 PF04760 Translation initiation factor IF-2, N-terminal region D4K88_RS04365 PF00288 GHMP kinases N terminal domain D4K88_RS04375 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D4K88_RS04380 PF03775 Septum formation inhibitor MinC, C-terminal domain D4K88_RS04405 PF02548 Ketopantoate hydroxymethyltransferase D4K88_RS04410 PF05496 Holliday junction DNA helicase RuvB P-loop domain D4K88_RS04410 PF05491 RuvB C-terminal winged helix domain D4K88_RS04410 PF17864 RuvB AAA lid domain D4K88_RS04420 PF00902 Sec-independent protein translocase protein (TatC) D4K88_RS04425 PF02547 Queuosine biosynthesis protein D4K88_RS04430 PF02527 rRNA small subunit methyltransferase G D4K88_RS04455 PF00072 Response regulator receiver domain D4K88_RS04465 PF00004 ATPase family associated with various cellular activities (AAA) D4K88_RS04465 PF17862 AAA+ lid domain D4K88_RS04465 PF01434 Peptidase family M41 D4K88_RS04475 PF01066 CDP-alcohol phosphatidyltransferase D4K88_RS04480 PF00403 Heavy-metal-associated domain D4K88_RS04485 PF00403 Heavy-metal-associated domain D4K88_RS04500 PF03824 High-affinity nickel-transport protein D4K88_RS04510 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system D4K88_RS04525 PF00664 ABC transporter transmembrane region D4K88_RS04525 PF00005 ABC transporter D4K88_RS04535 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D4K88_RS04535 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D4K88_RS04545 PF01728 FtsJ-like methyltransferase D4K88_RS04545 PF01479 S4 domain D4K88_RS04550 PF01687 Riboflavin kinase D4K88_RS04550 PF06574 FAD synthetase D4K88_RS04555 PF02780 Transketolase, C-terminal domain D4K88_RS04555 PF00456 Transketolase, thiamine diphosphate binding domain D4K88_RS04555 PF02779 Transketolase, pyrimidine binding domain D4K88_RS04565 PF01580 FtsK/SpoIIIE family D4K88_RS04565 PF09397 Ftsk gamma domain D4K88_RS04565 PF17854 FtsK alpha domain D4K88_RS04575 PF00083 Sugar (and other) transporter D4K88_RS04580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D4K88_RS04580 PF00460 Flagella basal body rod protein D4K88_RS04605 PF01385 Probable transposase D4K88_RS04605 PF12323 Helix-turn-helix domain D4K88_RS04605 PF07282 Putative transposase DNA-binding domain D4K88_RS04610 PF01797 Transposase IS200 like D4K88_RS04615 PF08238 Sel1 repeat D4K88_RS04620 PF01081 KDPG and KHG aldolase D4K88_RS04625 PF00920 Dehydratase family D4K88_RS04630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D4K88_RS04630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D4K88_RS04635 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D4K88_RS04640 PF02685 Glucokinase D4K88_RS04645 PF08240 Alcohol dehydrogenase GroES-like domain D4K88_RS04645 PF00107 Zinc-binding dehydrogenase D4K88_RS04665 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D4K88_RS04675 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D4K88_RS04675 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D4K88_RS04680 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D4K88_RS04685 PF00206 Lyase D4K88_RS04685 PF10397 Adenylosuccinate lyase C-terminus D4K88_RS04695 PF00271 Helicase conserved C-terminal domain D4K88_RS04695 PF04851 Type III restriction enzyme, res subunit D4K88_RS04695 PF02151 UvrB/uvrC motif D4K88_RS04695 PF12344 Ultra-violet resistance protein B D4K88_RS04695 PF17757 UvrB interaction domain D4K88_RS04715 PF01330 RuvA N terminal domain D4K88_RS04715 PF07499 RuvA, C-terminal domain D4K88_RS04725 PF03023 Lipid II flippase MurJ D4K88_RS04730 PF09190 DALR domain D4K88_RS04730 PF01406 tRNA synthetases class I (C) catalytic domain D4K88_RS04735 PF03797 Autotransporter beta-domain D4K88_RS04735 PF02691 Vacuolating cyotoxin D4K88_RS04740 PF00005 ABC transporter D4K88_RS04745 PF01032 FecCD transport family D4K88_RS04750 PF00106 short chain dehydrogenase D4K88_RS04755 PF03061 Thioesterase superfamily D4K88_RS04790 PF01924 Hydrogenase formation hypA family D4K88_RS04795 PF01455 HupF/HypC family D4K88_RS04800 PF02492 CobW/HypB/UreG, nucleotide-binding domain D4K88_RS04820 PF00871 Acetokinase family D4K88_RS04835 PF13861 FlgD Tudor-like domain D4K88_RS04835 PF13860 FlgD Ig-like domain D4K88_RS04835 PF03963 Flagellar hook capping protein - N-terminal region D4K88_RS04840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D4K88_RS04840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D4K88_RS04840 PF07559 Flagellar basal body protein FlaE D4K88_RS04840 PF07559 Flagellar basal body protein FlaE D4K88_RS04840 PF00460 Flagella basal body rod protein D4K88_RS04840 PF00460 Flagella basal body rod protein D4K88_RS04850 PF02384 N-6 DNA Methylase D4K88_RS04850 PF07669 Eco57I restriction-modification methylase D4K88_RS04855 PF00580 UvrD/REP helicase N-terminal domain D4K88_RS04855 PF13361 UvrD-like helicase C-terminal domain D4K88_RS04890 PF02142 MGS-like domain D4K88_RS04890 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D4K88_RS04890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D4K88_RS04895 PF01027 Inhibitor of apoptosis-promoting Bax1 D4K88_RS04900 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D4K88_RS04900 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D4K88_RS04905 PF02691 Vacuolating cyotoxin D4K88_RS04905 PF03797 Autotransporter beta-domain D4K88_RS04915 PF01361 Tautomerase enzyme D4K88_RS04920 PF02132 RecR protein D4K88_RS04925 PF01142 tRNA pseudouridine synthase D (TruD) D4K88_RS04930 PF01435 Peptidase family M48 D4K88_RS04935 PF01227 GTP cyclohydrolase I D4K88_RS04940 PF00348 Polyprenyl synthetase D4K88_RS04945 PF01975 Survival protein SurE D4K88_RS04955 PF01242 6-pyruvoyl tetrahydropterin synthase D4K88_RS04975 PF00083 Sugar (and other) transporter D4K88_RS04990 PF00528 Binding-protein-dependent transport system inner membrane component D4K88_RS04995 PF00497 Bacterial extracellular solute-binding proteins, family 3 D4K88_RS05000 PF01168 Alanine racemase, N-terminal domain D4K88_RS05000 PF00842 Alanine racemase, C-terminal domain D4K88_RS05005 PF01235 Sodium:alanine symporter family D4K88_RS05010 PF01266 FAD dependent oxidoreductase D4K88_RS05015 PF01042 Endoribonuclease L-PSP D4K88_RS05040 PF03553 Na+/H+ antiporter family D4K88_RS05060 PF02590 Predicted SPOUT methyltransferase D4K88_RS05065 PF17848 Acetyl-coA carboxylase zinc finger domain D4K88_RS05065 PF01039 Carboxyl transferase domain D4K88_RS05075 PF00994 Probable molybdopterin binding domain D4K88_RS05075 PF02464 Competence-damaged protein D4K88_RS05075 PF18146 Damage-inducible protein CinA KH domain D4K88_RS05090 PF01797 Transposase IS200 like D4K88_RS05095 PF12323 Helix-turn-helix domain D4K88_RS05095 PF07282 Putative transposase DNA-binding domain D4K88_RS05095 PF01385 Probable transposase D4K88_RS05100 PF00881 Nitroreductase family D4K88_RS05105 PF01790 Prolipoprotein diacylglyceryl transferase D4K88_RS05110 PF00849 RNA pseudouridylate synthase D4K88_RS05115 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D4K88_RS05115 PF00534 Glycosyl transferases group 1 D4K88_RS05125 PF01784 NIF3 (NGG1p interacting factor 3) D4K88_RS05130 PF02091 Glycyl-tRNA synthetase alpha subunit D4K88_RS05135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D4K88_RS05135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D4K88_RS05160 PF09827 CRISPR associated protein Cas2 D4K88_RS05170 PF00873 AcrB/AcrD/AcrF family D4K88_RS05185 PF02092 Glycyl-tRNA synthetase beta subunit D4K88_RS05195 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D4K88_RS05195 PF01676 Metalloenzyme superfamily D4K88_RS05200 PF02686 Glu-tRNAGln amidotransferase C subunit D4K88_RS05205 PF00202 Aminotransferase class-III D4K88_RS05215 PF02491 SHS2 domain inserted in FTSA D4K88_RS05220 PF00091 Tubulin/FtsZ family, GTPase domain D4K88_RS05220 PF12327 FtsZ family, C-terminal domain D4K88_RS05235 PF02601 Exonuclease VII, large subunit D4K88_RS05235 PF13742 OB-fold nucleic acid binding domain D4K88_RS05260 PF00924 Mechanosensitive ion channel D4K88_RS05375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D4K88_RS05375 PF17944 Arginine decarboxylase C-terminal helical extension D4K88_RS05375 PF17810 Arginine decarboxylase helical bundle domain D4K88_RS05390 PF08003 Protein of unknown function (DUF1698) D4K88_RS05400 PF00133 tRNA synthetases class I (I, L, M and V) D4K88_RS05400 PF09334 tRNA synthetases class I (M) D4K88_RS05400 PF01588 Putative tRNA binding domain D4K88_RS05410 PF00924 Mechanosensitive ion channel D4K88_RS05440 PF00117 Glutamine amidotransferase class-I D4K88_RS05440 PF02540 NAD synthase D4K88_RS05440 PF00958 GMP synthase C terminal domain D4K88_RS05450 PF18364 Molybdopterin oxidoreductase N-terminal domain D4K88_RS05450 PF00384 Molybdopterin oxidoreductase D4K88_RS05450 PF01568 Molydopterin dinucleotide binding domain D4K88_RS05460 PF02347 Glycine cleavage system P-protein D4K88_RS05465 PF01230 HIT domain D4K88_RS05470 PF01409 tRNA synthetases class II core domain (F) D4K88_RS05470 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D4K88_RS05475 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D4K88_RS05475 PF03484 tRNA synthetase B5 domain D4K88_RS05475 PF03147 Ferredoxin-fold anticodon binding domain D4K88_RS05475 PF01588 Putative tRNA binding domain D4K88_RS05480 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D4K88_RS05485 PF02401 LytB protein D4K88_RS05490 PF00575 S1 RNA binding domain D4K88_RS05500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D4K88_RS05500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D4K88_RS05500 PF01842 ACT domain D4K88_RS05505 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D4K88_RS05510 PF01168 Alanine racemase, N-terminal domain D4K88_RS05520 PF00072 Response regulator receiver domain D4K88_RS05520 PF01584 CheW-like domain D4K88_RS05525 PF00072 Response regulator receiver domain D4K88_RS05525 PF01627 Hpt domain D4K88_RS05525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D4K88_RS05525 PF01584 CheW-like domain D4K88_RS05525 PF02895 Signal transducing histidine kinase, homodimeric domain D4K88_RS05530 PF01584 CheW-like domain D4K88_RS05535 PF08534 Redoxin D4K88_RS05540 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D4K88_RS05540 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D4K88_RS05545 PF13649 Methyltransferase domain D4K88_RS05550 PF00271 Helicase conserved C-terminal domain D4K88_RS05550 PF18074 Primosomal protein N C-terminal domain D4K88_RS05550 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D4K88_RS05550 PF00270 DEAD/DEAH box helicase D4K88_RS05575 PF01435 Peptidase family M48 D4K88_RS05580 PF05175 Methyltransferase small domain D4K88_RS05580 PF17827 PrmC N-terminal domain D4K88_RS05585 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D4K88_RS05585 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D4K88_RS05590 PF18025 Alpha-(1,3)-fucosyltransferase FucT N-terminal domain D4K88_RS05590 PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term D4K88_RS05595 PF01578 Cytochrome C assembly protein D4K88_RS05595 PF05140 ResB-like family D4K88_RS05605 PF00762 Ferrochelatase D4K88_RS05615 PF04452 RNA methyltransferase D4K88_RS05625 PF00692 dUTPase D4K88_RS05630 PF00364 Biotin-requiring enzyme D4K88_RS05635 PF02785 Biotin carboxylase C-terminal domain D4K88_RS05635 PF00289 Biotin carboxylase, N-terminal domain D4K88_RS05635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D4K88_RS05655 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D4K88_RS05665 PF00268 Ribonucleotide reductase, small chain D4K88_RS05680 PF01416 tRNA pseudouridine synthase D4K88_RS05685 PF01370 NAD dependent epimerase/dehydratase family D4K88_RS05705 PF00106 short chain dehydrogenase D4K88_RS05715 PF00679 Elongation factor G C-terminus D4K88_RS05715 PF00009 Elongation factor Tu GTP binding domain D4K88_RS05715 PF03144 Elongation factor Tu domain 2 D4K88_RS05715 PF06421 GTP-binding protein LepA C-terminus D4K88_RS05720 PF02780 Transketolase, C-terminal domain D4K88_RS05720 PF02779 Transketolase, pyrimidine binding domain D4K88_RS05720 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D4K88_RS05730 PF14842 FliG N-terminal domain D4K88_RS05730 PF14841 FliG middle domain D4K88_RS05730 PF01706 FliG C-terminal domain D4K88_RS05735 PF01514 Secretory protein of YscJ/FliF family D4K88_RS05735 PF08345 Flagellar M-ring protein C-terminal D4K88_RS05745 PF00117 Glutamine amidotransferase class-I D4K88_RS05745 PF06418 CTP synthase N-terminus D4K88_RS05750 PF10141 Single-strand DNA-specific exonuclease, C terminal domain D4K88_RS05750 PF17768 RecJ OB domain D4K88_RS05750 PF02272 DHHA1 domain D4K88_RS05750 PF01368 DHH family D4K88_RS05755 PF00849 RNA pseudouridylate synthase D4K88_RS05805 PF08238 Sel1 repeat D4K88_RS05810 PF03652 Holliday junction resolvase D4K88_RS05815 PF02481 DNA recombination-mediator protein A D4K88_RS05815 PF17782 DprA winged helix domain D4K88_RS05820 PF03776 Septum formation topological specificity factor MinE D4K88_RS05825 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D4K88_RS05830 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D4K88_RS05830 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D4K88_RS05840 PF02540 NAD synthase D4K88_RS05845 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D4K88_RS05855 PF02348 Cytidylyltransferase D4K88_RS05860 PF02348 Cytidylyltransferase D4K88_RS05865 PF02107 Flagellar L-ring protein D4K88_RS05885 PF00625 Guanylate kinase D4K88_RS05890 PF02416 mttA/Hcf106 family D4K88_RS05895 PF03485 Arginyl tRNA synthetase N terminal domain D4K88_RS05895 PF00750 tRNA synthetases class I (R) D4K88_RS05895 PF05746 DALR anticodon binding domain D4K88_RS05900 PF10615 Protein of unknown function (DUF2470) D4K88_RS05900 PF01243 Pyridoxamine 5'-phosphate oxidase D4K88_RS05935 PF02492 CobW/HypB/UreG, nucleotide-binding domain D4K88_RS05935 PF07683 Cobalamin synthesis protein cobW C-terminal domain D4K88_RS05945 PF01522 Polysaccharide deacetylase D4K88_RS05950 PF00795 Carbon-nitrogen hydrolase D4K88_RS05965 PF00202 Aminotransferase class-III D4K88_RS05980 PF01018 GTP1/OBG D4K88_RS05980 PF01926 50S ribosome-binding GTPase D4K88_RS05985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D4K88_RS05985 PF00005 ABC transporter D4K88_RS05990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D4K88_RS05990 PF00005 ABC transporter D4K88_RS05995 PF00528 Binding-protein-dependent transport system inner membrane component D4K88_RS05995 PF12911 N-terminal TM domain of oligopeptide transport permease C D4K88_RS06000 PF00528 Binding-protein-dependent transport system inner membrane component D4K88_RS06005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D4K88_RS06010 PF01016 Ribosomal L27 protein D4K88_RS06015 PF00829 Ribosomal prokaryotic L21 protein D4K88_RS06025 PF00795 Carbon-nitrogen hydrolase D4K88_RS06030 PF04715 Anthranilate synthase component I, N terminal region D4K88_RS06030 PF00425 chorismate binding enzyme D4K88_RS06045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D4K88_RS06045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D4K88_RS06065 PF01434 Peptidase family M41 D4K88_RS06065 PF17862 AAA+ lid domain D4K88_RS06065 PF00004 ATPase family associated with various cellular activities (AAA) D4K88_RS06070 PF00919 Uncharacterized protein family UPF0004 D4K88_RS06070 PF04055 Radical SAM superfamily D4K88_RS06080 PF01761 3-dehydroquinate synthase D4K88_RS06090 PF01702 Queuine tRNA-ribosyltransferase D4K88_RS06100 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D4K88_RS06105 PF02541 Ppx/GppA phosphatase family D4K88_RS06115 PF00218 Indole-3-glycerol phosphate synthase D4K88_RS06125 PF03692 Putative zinc- or iron-chelating domain D4K88_RS06150 PF00919 Uncharacterized protein family UPF0004 D4K88_RS06150 PF04055 Radical SAM superfamily D4K88_RS06160 PF01979 Amidohydrolase family D4K88_RS06165 PF01979 Amidohydrolase family D4K88_RS06170 PF02683 Cytochrome C biogenesis protein transmembrane region D4K88_RS06175 PF10431 C-terminal, D2-small domain, of ClpB protein D4K88_RS06175 PF02861 Clp amino terminal domain, pathogenicity island component D4K88_RS06175 PF07724 AAA domain (Cdc48 subfamily) D4K88_RS06175 PF00004 ATPase family associated with various cellular activities (AAA) D4K88_RS06175 PF17871 AAA lid domain D4K88_RS06180 PF01555 DNA methylase D4K88_RS06185 PF18643 BsaWI restriction endonuclease type 2 D4K88_RS06195 PF18273 Type III R-M EcoP15I C-terminal domain D4K88_RS06195 PF01555 DNA methylase D4K88_RS06200 PF13742 OB-fold nucleic acid binding domain D4K88_RS06200 PF02601 Exonuclease VII, large subunit D4K88_RS06205 PF02163 Peptidase family M50 D4K88_RS06220 PF00709 Adenylosuccinate synthetase D4K88_RS06250 PF00005 ABC transporter D4K88_RS06250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D4K88_RS06265 PF00270 DEAD/DEAH box helicase D4K88_RS06265 PF00271 Helicase conserved C-terminal domain D4K88_RS06270 PF02119 Flagellar P-ring protein D4K88_RS06280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D4K88_RS06280 PF00512 His Kinase A (phospho-acceptor) domain D4K88_RS06285 PF00210 Ferritin-like domain D4K88_RS06300 PF00348 Polyprenyl synthetase D4K88_RS06305 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D4K88_RS06305 PF01488 Shikimate / quinate 5-dehydrogenase D4K88_RS06305 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D4K88_RS06310 PF04073 Aminoacyl-tRNA editing domain D4K88_RS06310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D4K88_RS06310 PF03129 Anticodon binding domain D4K88_RS06315 PF03900 Porphobilinogen deaminase, C-terminal domain D4K88_RS06315 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D4K88_RS06325 PF08238 Sel1 repeat D4K88_RS06325 PF13181 Tetratricopeptide repeat D4K88_RS06325 PF13176 Tetratricopeptide repeat D4K88_RS06335 PF03738 Glutathionylspermidine synthase preATP-grasp D4K88_RS06350 PF02348 Cytidylyltransferase D4K88_RS06365 PF00916 Sulfate permease family D4K88_RS06365 PF01740 STAS domain D4K88_RS06375 PF01925 Sulfite exporter TauE/SafE D4K88_RS06380 PF01641 SelR domain D4K88_RS06380 PF01625 Peptide methionine sulfoxide reductase D4K88_RS06385 PF18073 Rubredoxin metal binding domain D4K88_RS06395 PF04324 BFD-like [2Fe-2S] binding domain D4K88_RS06395 PF01106 NifU-like domain D4K88_RS06395 PF01592 NifU-like N terminal domain D4K88_RS06400 PF00266 Aminotransferase class-V D4K88_RS06410 PF01161 Phosphatidylethanolamine-binding protein D4K88_RS06415 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D4K88_RS06415 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D4K88_RS06415 PF13288 DXP reductoisomerase C-terminal domain D4K88_RS06425 PF00939 Sodium:sulfate symporter transmembrane region D4K88_RS06430 PF01134 Glucose inhibited division protein A D4K88_RS06430 PF13932 GidA associated domain D4K88_RS06435 PF01546 Peptidase family M20/M25/M40 D4K88_RS06435 PF07687 Peptidase dimerisation domain D4K88_RS06440 PF08238 Sel1 repeat D4K88_RS06440 PF13181 Tetratricopeptide repeat D4K88_RS06445 PF00183 Hsp90 protein D4K88_RS06460 PF01883 Iron-sulfur cluster assembly protein D4K88_RS06460 PF10609 NUBPL iron-transfer P-loop NTPase D4K88_RS06485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D4K88_RS06485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D4K88_RS06490 PF02504 Fatty acid synthesis protein D4K88_RS06495 PF01783 Ribosomal L32p protein family D4K88_RS06505 PF00334 Nucleoside diphosphate kinase D4K88_RS06510 PF00438 S-adenosylmethionine synthetase, N-terminal domain D4K88_RS06510 PF02772 S-adenosylmethionine synthetase, central domain D4K88_RS06510 PF02773 S-adenosylmethionine synthetase, C-terminal domain D4K88_RS06515 PF00132 Bacterial transferase hexapeptide (six repeats) D4K88_RS06515 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D4K88_RS06525 PF00121 Triosephosphate isomerase D4K88_RS06530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D4K88_RS06535 PF02910 Fumarate reductase flavoprotein C-term D4K88_RS06535 PF00890 FAD binding domain D4K88_RS06540 PF13085 2Fe-2S iron-sulfur cluster binding domain D4K88_RS06540 PF13183 4Fe-4S dicluster domain D4K88_RS06545 PF13091 PLD-like domain D4K88_RS06550 PF03350 Uncharacterized protein family, UPF0114 D4K88_RS06580 PF00464 Serine hydroxymethyltransferase D4K88_RS06585 PF00152 tRNA synthetases class II (D, K and N) D4K88_RS06585 PF01336 OB-fold nucleic acid binding domain D4K88_RS06595 PF00795 Carbon-nitrogen hydrolase D4K88_RS06600 PF00005 ABC transporter D4K88_RS06605 PF08666 SAF domain D4K88_RS06605 PF03102 NeuB family D4K88_RS06610 PF08207 Elongation factor P (EF-P) KOW-like domain D4K88_RS06610 PF01132 Elongation factor P (EF-P) OB domain D4K88_RS06610 PF09285 Elongation factor P, C-terminal D4K88_RS06615 PF01116 Fructose-bisphosphate aldolase class-II D4K88_RS06620 PF00639 PPIC-type PPIASE domain D4K88_RS06640 PF03453 MoeA N-terminal region (domain I and II) D4K88_RS06640 PF03454 MoeA C-terminal region (domain IV) D4K88_RS06640 PF00994 Probable molybdopterin binding domain D4K88_RS06645 PF00472 RF-1 domain D4K88_RS06645 PF03462 PCRF domain D4K88_RS06655 PF01136 Peptidase family U32 D4K88_RS06670 PF00486 Transcriptional regulatory protein, C terminal D4K88_RS06670 PF00072 Response regulator receiver domain D4K88_RS06680 PF00490 Delta-aminolevulinic acid dehydratase D4K88_RS06685 PF01709 Transcriptional regulator D4K88_RS06695 PF01797 Transposase IS200 like D4K88_RS06700 PF12323 Helix-turn-helix domain D4K88_RS06700 PF07282 Putative transposase DNA-binding domain D4K88_RS06700 PF01385 Probable transposase D4K88_RS06710 PF08238 Sel1 repeat D4K88_RS06725 PF01202 Shikimate kinase D4K88_RS06740 PF03952 Enolase, N-terminal domain D4K88_RS06740 PF00113 Enolase, C-terminal TIM barrel domain D4K88_RS06745 PF00154 recA bacterial DNA recombination protein D4K88_RS06775 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D4K88_RS06775 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP D4K88_RS06790 PF00115 Cytochrome C and Quinol oxidase polypeptide I D4K88_RS06795 PF00939 Sodium:sulfate symporter transmembrane region D4K88_RS06800 PF00633 Helix-hairpin-helix motif D4K88_RS06800 PF00730 HhH-GPD superfamily base excision DNA repair protein D4K88_RS06800 PF14815 NUDIX domain D4K88_RS06805 PF02652 L-lactate permease D4K88_RS06810 PF02652 L-lactate permease D4K88_RS06815 PF02754 Cysteine-rich domain D4K88_RS06820 PF11870 Domain of unknown function (DUF3390) D4K88_RS06820 PF02589 LUD domain D4K88_RS06820 PF13183 4Fe-4S dicluster domain D4K88_RS06825 PF02589 LUD domain D4K88_RS06830 PF00578 AhpC/TSA family D4K88_RS06840 PF01474 Class-II DAHP synthetase family D4K88_RS06845 PF03222 Tryptophan/tyrosine permease family D4K88_RS06850 PF03315 Serine dehydratase beta chain D4K88_RS06850 PF03313 Serine dehydratase alpha chain D4K88_RS06870 PF00453 Ribosomal protein L20 D4K88_RS06875 PF01632 Ribosomal protein L35 D4K88_RS06880 PF00707 Translation initiation factor IF-3, C-terminal domain D4K88_RS06880 PF05198 Translation initiation factor IF-3, N-terminal domain D4K88_RS06885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D4K88_RS06885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D4K88_RS06885 PF03129 Anticodon binding domain D4K88_RS06895 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D4K88_RS06895 PF00391 PEP-utilising enzyme, mobile domain D4K88_RS06895 PF02896 PEP-utilising enzyme, TIM barrel domain D4K88_RS06905 PF04055 Radical SAM superfamily D4K88_RS06910 PF01396 Topoisomerase DNA binding C4 zinc finger D4K88_RS06910 PF01131 DNA topoisomerase D4K88_RS06910 PF01751 Toprim domain D4K88_RS06915 PF00669 Bacterial flagellin N-terminal helical region D4K88_RS06915 PF07196 Flagellin hook IN motif D4K88_RS06915 PF00700 Bacterial flagellin C-terminal helical region D4K88_RS06940 PF01025 GrpE D4K88_RS06945 PF00012 Hsp70 protein D4K88_RS06955 PF00291 Pyridoxal-phosphate dependent enzyme D4K88_RS06960 PF01053 Cys/Met metabolism PLP-dependent enzyme D4K88_RS06965 PF02664 S-Ribosylhomocysteinase (LuxS) D4K88_RS06970 PF00149 Calcineurin-like phosphoesterase D4K88_RS06970 PF02872 5'-nucleotidase, C-terminal domain D4K88_RS06975 PF17200 Single Cache domain 2 D4K88_RS06975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D4K88_RS06975 PF00672 HAMP domain D4K88_RS06980 PF00535 Glycosyl transferase family 2 D4K88_RS06990 PF02677 Epoxyqueuosine reductase QueH D4K88_RS06995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D4K88_RS06995 PF08447 PAS fold D4K88_RS06995 PF13426 PAS domain D4K88_RS07000 PF00380 Ribosomal protein S9/S16 D4K88_RS07005 PF00572 Ribosomal protein L13 D4K88_RS07010 PF17402 Family of unknown function (DUF5408) D4K88_RS07015 PF06039 Malate:quinone oxidoreductase (Mqo) D4K88_RS07025 PF04545 Sigma-70, region 4 D4K88_RS07025 PF00140 Sigma-70 factor, region 1.2 D4K88_RS07025 PF04539 Sigma-70 region 3 D4K88_RS07025 PF04542 Sigma-70 region 2 D4K88_RS07030 PF01048 Phosphorylase superfamily D4K88_RS07035 PF00698 Acyl transferase domain D4K88_RS07045 PF04556 DpnII restriction endonuclease D4K88_RS07050 PF01555 DNA methylase D4K88_RS07055 PF01531 Glycosyl transferase family 11 D4K88_RS07070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D4K88_RS07070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D4K88_RS07080 PF00291 Pyridoxal-phosphate dependent enzyme D4K88_RS07085 PF00672 HAMP domain D4K88_RS07085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D4K88_RS07085 PF17200 Single Cache domain 2 D4K88_RS07110 PF00472 RF-1 domain D4K88_RS07110 PF03462 PCRF domain D4K88_RS07115 PF01649 Ribosomal protein S20 D4K88_RS07120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D4K88_RS07120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D4K88_RS07120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D4K88_RS07120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D4K88_RS07125 PF01252 Signal peptidase (SPase) II D4K88_RS07135 PF00699 Urease beta subunit D4K88_RS07135 PF00547 Urease, gamma subunit D4K88_RS07140 PF01979 Amidohydrolase family D4K88_RS07140 PF00449 Urease alpha-subunit, N-terminal domain D4K88_RS07145 PF02293 AmiS/UreI family transporter D4K88_RS07150 PF05194 UreE urease accessory protein, C-terminal domain D4K88_RS07150 PF02814 UreE urease accessory protein, N-terminal domain D4K88_RS07155 PF01730 UreF D4K88_RS07160 PF02492 CobW/HypB/UreG, nucleotide-binding domain D4K88_RS07165 PF01774 UreD urease accessory protein D4K88_RS07225 PF00171 Aldehyde dehydrogenase family D4K88_RS07225 PF01619 Proline dehydrogenase D4K88_RS07225 PF14850 DNA-binding domain of Proline dehydrogenase D4K88_RS07225 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D4K88_RS07230 PF00474 Sodium:solute symporter family D4K88_RS07255 PF01555 DNA methylase D4K88_RS07270 PF00145 C-5 cytosine-specific DNA methylase D4K88_RS07270 PF01381 Helix-turn-helix D4K88_RS07275 PF01555 DNA methylase D4K88_RS07280 PF04371 Porphyromonas-type peptidyl-arginine deiminase D4K88_RS07285 PF07503 HypF finger D4K88_RS07285 PF01300 Telomere recombination D4K88_RS07285 PF17788 HypF Kae1-like domain D4K88_RS07285 PF00708 Acylphosphatase D4K88_RS07290 PF02769 AIR synthase related protein, C-terminal domain D4K88_RS07290 PF00586 AIR synthase related protein, N-terminal domain D4K88_RS07295 PF01370 NAD dependent epimerase/dehydratase family D4K88_RS07300 PF16363 GDP-mannose 4,6 dehydratase D4K88_RS07305 PF01050 Mannose-6-phosphate isomerase D4K88_RS07305 PF00483 Nucleotidyl transferase D4K88_RS07340 PF02575 YbaB/EbfC DNA-binding family D4K88_RS07345 PF02261 Aspartate decarboxylase D4K88_RS07350 PF07724 AAA domain (Cdc48 subfamily) D4K88_RS07350 PF17871 AAA lid domain D4K88_RS07350 PF10431 C-terminal, D2-small domain, of ClpB protein D4K88_RS07350 PF02861 Clp amino terminal domain, pathogenicity island component D4K88_RS07350 PF00004 ATPase family associated with various cellular activities (AAA) D4K88_RS07355 PF02617 ATP-dependent Clp protease adaptor protein ClpS D4K88_RS07360 PF00582 Universal stress protein family D4K88_RS07375 PF07509 Protein of unknown function (DUF1523) D4K88_RS07380 PF00180 Isocitrate/isopropylmalate dehydrogenase D4K88_RS07385 PF00285 Citrate synthase, C-terminal domain D4K88_RS07400 PF00884 Sulfatase D4K88_RS07400 PF08019 Phosphoethanolamine transferase EptA/EptB D4K88_RS07405 PF01569 PAP2 superfamily D4K88_RS07410 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D4K88_RS07415 PF00072 Response regulator receiver domain D4K88_RS07415 PF01584 CheW-like domain D4K88_RS07455 PF16730 DnaG-primase C-terminal, helicase-binding domain D4K88_RS07455 PF13662 Toprim domain D4K88_RS07455 PF01807 CHC2 zinc finger D4K88_RS07455 PF08275 DNA primase catalytic core, N-terminal domain D4K88_RS07465 PF00166 Chaperonin 10 Kd subunit D4K88_RS07470 PF00118 TCP-1/cpn60 chaperonin family D4K88_RS07505 PF02569 Pantoate-beta-alanine ligase D4K88_RS07510 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D4K88_RS07515 PF00484 Carbonic anhydrase D4K88_RS07520 PF00793 DAHP synthetase I family D4K88_RS07525 PF00885 6,7-dimethyl-8-ribityllumazine synthase D4K88_RS07530 PF01029 NusB family D4K88_RS07540 PF03981 Ubiquinol-cytochrome C chaperone D4K88_RS07540 PF13099 Domain of unknown function (DUF3944) D4K88_RS07545 PF03981 Ubiquinol-cytochrome C chaperone D4K88_RS07555 PF03981 Ubiquinol-cytochrome C chaperone D4K88_RS07565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D4K88_RS07565 PF00460 Flagella basal body rod protein D4K88_RS07570 PF00814 Glycoprotease family D4K88_RS07575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D4K88_RS07580 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D4K88_RS07585 PF00953 Glycosyl transferase family 4 D4K88_RS07590 PF01569 PAP2 superfamily D4K88_RS07605 PF00528 Binding-protein-dependent transport system inner membrane component D4K88_RS07610 PF00005 ABC transporter D4K88_RS07610 PF09383 NIL domain D4K88_RS07620 PF00677 Lumazine binding domain D4K88_RS07625 PF01026 TatD related DNase D4K88_RS07630 PF01464 Transglycosylase SLT domain D4K88_RS07630 PF01476 LysM domain D4K88_RS07635 PF05036 Sporulation related domain D4K88_RS07635 PF03330 Lytic transglycolase D4K88_RS07655 PF01926 50S ribosome-binding GTPase D4K88_RS07665 PF03717 Penicillin-binding Protein dimerisation domain D4K88_RS07665 PF00905 Penicillin binding protein transpeptidase domain D4K88_RS07670 PF03180 NLPA lipoprotein D4K88_RS07675 PF10417 C-terminal domain of 1-Cys peroxiredoxin D4K88_RS07675 PF00578 AhpC/TSA family D4K88_RS07690 PF01098 Cell cycle protein D4K88_RS07695 PF00460 Flagella basal body rod protein D4K88_RS07700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D4K88_RS07700 PF00460 Flagella basal body rod protein D4K88_RS07705 PF02049 Flagellar hook-basal body complex protein FliE D4K88_RS07715 PF03717 Penicillin-binding Protein dimerisation domain D4K88_RS07715 PF00905 Penicillin binding protein transpeptidase domain D4K88_RS07720 PF00889 Elongation factor TS D4K88_RS07725 PF00318 Ribosomal protein S2 D4K88_RS07730 PF12705 PD-(D/E)XK nuclease superfamily D4K88_RS07730 PF13361 UvrD-like helicase C-terminal domain D4K88_RS07730 PF00580 UvrD/REP helicase N-terminal domain D4K88_RS07735 PF06965 Na+/H+ antiporter 1 D4K88_RS07740 PF02699 Preprotein translocase subunit D4K88_RS07745 PF02355 Protein export membrane protein D4K88_RS07750 PF02355 Protein export membrane protein D4K88_RS07750 PF07549 SecD/SecF GG Motif D4K88_RS07760 PF00133 tRNA synthetases class I (I, L, M and V) D4K88_RS07760 PF13603 Leucyl-tRNA synthetase, Domain 2 D4K88_RS07760 PF09334 tRNA synthetases class I (M) D4K88_RS07770 PF02875 Mur ligase family, glutamate ligase domain D4K88_RS07770 PF08245 Mur ligase middle domain D4K88_RS07780 PF01551 Peptidase family M23 D4K88_RS07780 PF04225 Opacity-associated protein A LysM-like domain D4K88_RS07790 PF17757 UvrB interaction domain D4K88_RS07790 PF02559 CarD-like/TRCF domain D4K88_RS07790 PF00270 DEAD/DEAH box helicase D4K88_RS07790 PF03461 TRCF domain D4K88_RS07790 PF00271 Helicase conserved C-terminal domain D4K88_RS07795 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D4K88_RS07795 PF00355 Rieske [2Fe-2S] domain D4K88_RS07800 PF00033 Cytochrome b/b6/petB D4K88_RS07800 PF00032 Cytochrome b(C-terminal)/b6/petD D4K88_RS07820 PF01797 Transposase IS200 like D4K88_RS07825 PF07282 Putative transposase DNA-binding domain D4K88_RS07825 PF12323 Helix-turn-helix domain D4K88_RS07825 PF01385 Probable transposase D4K88_RS07835 PF02511 Thymidylate synthase complementing protein D4K88_RS07840 PF01380 SIS domain D4K88_RS07845 PF10398 Protein of unknown function (DUF2443)