EE66_RS00030	SM00271	DnaJ molecular chaperone homology domain
EE66_RS00045	SM00271	DnaJ molecular chaperone homology domain
EE66_RS00105	SM01403	EE66_RS00105
EE66_RS00125	SM01382	EE66_RS00125
EE66_RS00125	SM01383	EE66_RS00125
EE66_RS00140	SM00322	K homology RNA-binding domain
EE66_RS00160	SM01374	EE66_RS00160
EE66_RS00165	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
EE66_RS00215	SM00316	Ribosomal protein S1-like RNA-binding domain
EE66_RS00235	SM00363	S4 RNA-binding domain
EE66_RS00235	SM01390	EE66_RS00235
EE66_RS00240	SM00662	RNA polymerases D
EE66_RS00265	SM00867	YceI-like domain 
EE66_RS00360	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EE66_RS00360	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
EE66_RS00440	SM00287	Bacterial SH3 domain homologues
EE66_RS00450	SM00955	EE66_RS00450
EE66_RS00485	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
EE66_RS00510	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
EE66_RS00570	SM00729	Elongator protein 3, MiaB family, Radical SAM
EE66_RS00585	SM00450	Rhodanese Homology Domain
EE66_RS00600	SM00382	ATPases associated with a variety of cellular activities
EE66_RS00610	SM01209	EE66_RS00610
EE66_RS00610	SM01210	EE66_RS00610
EE66_RS00630	SM00316	Ribosomal protein S1-like RNA-binding domain
EE66_RS00630	SM00322	K homology RNA-binding domain
EE66_RS00670	SM00382	ATPases associated with a variety of cellular activities
EE66_RS00715	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
EE66_RS00715	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
EE66_RS00720	SM00649	Ribosomal protein L11/L12
EE66_RS00745	SM00663	RNA polymerase I subunit A N-terminus
EE66_RS00760	SM00838	Elongation factor G C-terminus
EE66_RS00760	SM00889	Elongation factor G, domain IV
EE66_RS00780	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EE66_RS00790	SM01057	Eukaryotic-type carbonic anhydrase
EE66_RS00865	SM00062	Bacterial periplasmic substrate-binding proteins
EE66_RS00870	SM00382	ATPases associated with a variety of cellular activities
EE66_RS00965	SM00382	ATPases associated with a variety of cellular activities
EE66_RS00965	SM00962	SRP54-type protein, GTPase domain
EE66_RS00965	SM00963	SRP54-type protein, helical bundle domain
EE66_RS01010	SM00382	ATPases associated with a variety of cellular activities
EE66_RS01030	SM00470	ParB-like nuclease domain
EE66_RS01060	SM00382	ATPases associated with a variety of cellular activities
EE66_RS01135	SM00671	Sel1-like repeats.
EE66_RS01145	SM00487	DEAD-like helicases superfamily
EE66_RS01145	SM00490	helicase superfamily c-terminal domain
EE66_RS01155	SM00998	Adenylosuccinate lyase C-terminus
EE66_RS01225	SM00028	Tetratricopeptide repeats
EE66_RS01225	SM00671	Sel1-like repeats.
EE66_RS01300	SM00878	Biotin carboxylase C-terminal domain
EE66_RS01350	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
EE66_RS01385	SM00487	DEAD-like helicases superfamily
EE66_RS01385	SM00490	helicase superfamily c-terminal domain
EE66_RS01405	SM00260	Two component signalling adaptor domain
EE66_RS01410	SM00073	Histidine Phosphotransfer domain
EE66_RS01410	SM00260	Two component signalling adaptor domain
EE66_RS01410	SM00387	Histidine kinase-like ATPases
EE66_RS01410	SM00448	cheY-homologous receiver domain
EE66_RS01410	SM01231	EE66_RS01410
EE66_RS01415	SM00260	Two component signalling adaptor domain
EE66_RS01415	SM00448	cheY-homologous receiver domain
EE66_RS01445	SM00316	Ribosomal protein S1-like RNA-binding domain
EE66_RS01460	SM00874	tRNA synthetase B5 domain
EE66_RS01460	SM00896	Ferredoxin-fold anticodon binding domain
EE66_RS01585	SM00864	Tubulin/FtsZ family, GTPase domain
EE66_RS01585	SM00865	Tubulin/FtsZ family, C-terminal domain
EE66_RS01590	SM00842	Cell division protein FtsA
EE66_RS01795	SM01005	Alanine racemase, C-terminal domain
EE66_RS01800	SM00062	Bacterial periplasmic substrate-binding proteins
EE66_RS01885	SM00869	Autotransporter beta-domain
EE66_RS01890	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
EE66_RS01900	SM00851	MGS-like domain
EE66_RS01900	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
EE66_RS02045	SM00382	ATPases associated with a variety of cellular activities
EE66_RS02050	SM00869	Autotransporter beta-domain
EE66_RS02055	SM00840	EE66_RS02055
EE66_RS02070	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EE66_RS02100	SM01060	EE66_RS02100
EE66_RS02200	SM01240	EE66_RS02200
EE66_RS02205	SM00382	ATPases associated with a variety of cellular activities
EE66_RS02215	SM00014	Acid phosphatase homologues
EE66_RS02235	SM00487	DEAD-like helicases superfamily
EE66_RS02290	SM00411	bacterial (prokaryotic) histone like domain
EE66_RS02320	SM00116	Domain in cystathionine beta-synthase and other proteins.
EE66_RS02320	SM01240	EE66_RS02320
EE66_RS02330	SM00360	RNA recognition motif
EE66_RS02360	SM00465	GIY-YIG type nucleases (URI domain)
EE66_RS02375	SM00382	ATPases associated with a variety of cellular activities
EE66_RS02405	SM00849	Metallo-beta-lactamase superfamily
EE66_RS02485	SM00852	Probable molybdopterin binding domain
EE66_RS02550	SM00957	SecA DEAD-like domain
EE66_RS02550	SM00958	SecA preprotein cross-linking domain
EE66_RS02600	SM01409	EE66_RS02600
EE66_RS02605	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EE66_RS02605	SM00954	Region found in RelA / SpoT proteins
EE66_RS02610	SM00363	S4 RNA-binding domain
EE66_RS02620	SM00646	EE66_RS02620
EE66_RS02665	SM00962	SRP54-type protein, GTPase domain
EE66_RS02680	SM00322	K homology RNA-binding domain
EE66_RS02680	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EE66_RS02740	SM00382	ATPases associated with a variety of cellular activities
EE66_RS02750	SM00060	Fibronectin type 3 domain
EE66_RS02755	SM00363	S4 RNA-binding domain
EE66_RS02775	SM01400	EE66_RS02775
EE66_RS02815	SM00729	Elongator protein 3, MiaB family, Radical SAM
EE66_RS02870	SM00870	EE66_RS02870
EE66_RS02895	SM00382	ATPases associated with a variety of cellular activities
EE66_RS02905	SM00382	ATPases associated with a variety of cellular activities
EE66_RS02940	SM00382	ATPases associated with a variety of cellular activities
EE66_RS02945	SM00382	ATPases associated with a variety of cellular activities
EE66_RS02945	SM00448	cheY-homologous receiver domain
EE66_RS02955	SM00434	DNA Topoisomerase IV
EE66_RS03000	SM00882	Coenzyme A transferase
EE66_RS03005	SM00882	Coenzyme A transferase
EE66_RS03110	SM00729	Elongator protein 3, MiaB family, Radical SAM
EE66_RS03125	SM00358	Double-stranded RNA binding motif
EE66_RS03125	SM00535	Ribonuclease III family
EE66_RS03145	SM00845	GatB domain
EE66_RS03155	SM00729	Elongator protein 3, MiaB family, Radical SAM
EE66_RS03285	SM00671	Sel1-like repeats.
EE66_RS03315	SM00463	Small MutS-related domain
EE66_RS03315	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
EE66_RS03315	SM00534	ATPase domain of DNA mismatch repair MUTS family
EE66_RS03350	SM00260	Two component signalling adaptor domain
EE66_RS03350	SM00448	cheY-homologous receiver domain
EE66_RS03355	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EE66_RS03355	SM00292	breast cancer carboxy-terminal domain
EE66_RS03355	SM00532	Ligase N family
EE66_RS03365	SM00382	ATPases associated with a variety of cellular activities
EE66_RS03375	SM00710	Parallel beta-helix repeats
EE66_RS03375	SM00869	Autotransporter beta-domain
EE66_RS03410	SM00478	endonuclease III
EE66_RS03420	SM00382	ATPases associated with a variety of cellular activities
EE66_RS03425	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EE66_RS03495	SM00899	EE66_RS03495
EE66_RS03500	SM00478	endonuclease III
EE66_RS03500	SM00525	EE66_RS03500
EE66_RS03620	SM00822	EE66_RS03620
EE66_RS03625	SM00823	Phosphopantetheine attachment site
EE66_RS03635	SM00825	Beta-ketoacyl synthase
EE66_RS03660	SM00967	RNA 2'-O ribose methyltransferase substrate binding
EE66_RS03675	SM00357	Cold shock protein domain
EE66_RS03675	SM00382	ATPases associated with a variety of cellular activities
EE66_RS03675	SM00959	Rho termination factor, N-terminal domain
EE66_RS03845	SM00671	Sel1-like repeats.
EE66_RS03860	SM00382	ATPases associated with a variety of cellular activities
EE66_RS03860	SM01086	C-terminal, D2-small domain, of ClpB protein
EE66_RS03880	SM01230	EE66_RS03880
EE66_RS03930	SM00387	Histidine kinase-like ATPases
EE66_RS03930	SM00433	TopoisomeraseII
EE66_RS03935	SM00480	DNA polymerase III beta subunit
EE66_RS04060	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04150	SM01130	EE66_RS04150
EE66_RS04175	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EE66_RS04185	SM00448	cheY-homologous receiver domain
EE66_RS04190	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
EE66_RS04190	SM00475	5'-3' exonuclease
EE66_RS04200	SM00271	DnaJ molecular chaperone homology domain
EE66_RS04205	SM00422	helix_turn_helix, mercury resistance
EE66_RS04210	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04255	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04255	SM00962	SRP54-type protein, GTPase domain
EE66_RS04280	SM01387	EE66_RS04280
EE66_RS04295	SM00448	cheY-homologous receiver domain
EE66_RS04295	SM00862	Transcriptional regulatory protein, C terminal
EE66_RS04375	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04420	SM00448	cheY-homologous receiver domain
EE66_RS04430	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04495	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04515	SM00363	S4 RNA-binding domain
EE66_RS04520	SM00904	Riboflavin kinase
EE66_RS04525	SM00861	Transketolase, pyrimidine binding domain
EE66_RS04535	SM00843	EE66_RS04535
EE66_RS04560	SM00861	Transketolase, pyrimidine binding domain
EE66_RS04640	SM00732	Likely ribonuclease with RNase H fold.
EE66_RS04705	SM00155	Phospholipase D. Active site motifs.
EE66_RS04715	SM00072	Guanylate kinase homologues.
EE66_RS04725	SM00836	DALR anticodon binding domain
EE66_RS04725	SM01016	Arginyl tRNA synthetase N terminal dom
EE66_RS04740	SM00833	Cobalamin synthesis protein cobW C-terminal domain
EE66_RS04800	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04805	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04855	SM00830	Chorismate mutase type II
EE66_RS04865	SM00869	Autotransporter beta-domain
EE66_RS04880	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04885	SM00729	Elongator protein 3, MiaB family, Radical SAM
EE66_RS04965	SM00729	Elongator protein 3, MiaB family, Radical SAM
EE66_RS04990	SM00382	ATPases associated with a variety of cellular activities
EE66_RS04990	SM01086	C-terminal, D2-small domain, of ClpB protein
EE66_RS05025	SM00788	Adenylosuccinate synthetase
EE66_RS05050	SM00382	ATPases associated with a variety of cellular activities
EE66_RS05060	SM00244	prohibitin homologues
EE66_RS05065	SM00487	DEAD-like helicases superfamily
EE66_RS05065	SM00490	helicase superfamily c-terminal domain
EE66_RS05080	SM00387	Histidine kinase-like ATPases
EE66_RS05080	SM00388	His Kinase A (phosphoacceptor) domain
EE66_RS05125	SM00671	Sel1-like repeats.
EE66_RS05185	SM00382	ATPases associated with a variety of cellular activities
EE66_RS05240	SM01228	EE66_RS05240
EE66_RS05255	SM00028	Tetratricopeptide repeats
EE66_RS05255	SM00671	Sel1-like repeats.
EE66_RS05260	SM00387	Histidine kinase-like ATPases
EE66_RS05330	SM00562	EE66_RS05330
EE66_RS05370	SM00155	Phospholipase D. Active site motifs.
EE66_RS05420	SM00382	ATPases associated with a variety of cellular activities
EE66_RS05425	SM00858	EE66_RS05425
EE66_RS05430	SM00841	Elongation factor P, C-terminal
EE66_RS05430	SM01185	EE66_RS05430
EE66_RS05460	SM00937	EE66_RS05460
EE66_RS05485	SM00448	cheY-homologous receiver domain
EE66_RS05485	SM00862	Transcriptional regulatory protein, C terminal
EE66_RS05490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EE66_RS05490	SM00387	Histidine kinase-like ATPases
EE66_RS05495	SM01004	Delta-aminolevulinic acid dehydratase
EE66_RS05505	SM00671	Sel1-like repeats.
EE66_RS05535	SM01192	EE66_RS05535
EE66_RS05535	SM01193	EE66_RS05535
EE66_RS05540	SM00382	ATPases associated with a variety of cellular activities
EE66_RS05595	SM00478	endonuclease III
EE66_RS05690	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
EE66_RS05740	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EE66_RS05760	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EE66_RS05760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EE66_RS05760	SM01049	EE66_RS05760
EE66_RS05800	SM01007	Class II Aldolase and Adducin N-terminal domain
EE66_RS05820	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
EE66_RS05820	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
EE66_RS05820	SM00493	EE66_RS05820
EE66_RS05850	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
EE66_RS05995	SM00487	DEAD-like helicases superfamily
EE66_RS05995	SM00490	helicase superfamily c-terminal domain
EE66_RS06085	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
EE66_RS06085	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
EE66_RS06085	SM00493	EE66_RS06085
EE66_RS06190	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EE66_RS06215	SM00937	EE66_RS06215
EE66_RS06255	SM00988	UreE urease accessory protein, N-terminal domain
EE66_RS06430	SM00382	ATPases associated with a variety of cellular activities
EE66_RS06430	SM01086	C-terminal, D2-small domain, of ClpB protein
EE66_RS06465	SM01329	EE66_RS06465
EE66_RS06490	SM00729	Elongator protein 3, MiaB family, Radical SAM
EE66_RS06490	SM00876	Biotin and Thiamin Synthesis associated domain
EE66_RS06540	SM00382	ATPases associated with a variety of cellular activities
EE66_RS06555	SM00363	S4 RNA-binding domain
EE66_RS06575	SM00116	Domain in cystathionine beta-synthase and other proteins.
EE66_RS06580	SM00849	Metallo-beta-lactamase superfamily
EE66_RS06585	SM00650	Ribosomal RNA adenine dimethylases
EE66_RS06685	SM01234	EE66_RS06685
EE66_RS06695	SM01245	EE66_RS06695
EE66_RS06735	SM00363	S4 RNA-binding domain
EE66_RS06740	SM00481	DNA polymerase alpha chain like domain
EE66_RS06765	SM00382	ATPases associated with a variety of cellular activities
EE66_RS06790	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
EE66_RS06790	SM00474	3'-5' exonuclease
EE66_RS06790	SM00475	5'-3' exonuclease
EE66_RS06790	SM00482	DNA polymerase A domain
EE66_RS06835	SM00028	Tetratricopeptide repeats
EE66_RS06890	SM00116	Domain in cystathionine beta-synthase and other proteins.
EE66_RS06890	SM01091	Transporter associated domain
EE66_RS06985	SM01207	EE66_RS06985
EE66_RS06990	SM00905	Dihydroneopterin aldolase
EE66_RS07010	SM00316	Ribosomal protein S1-like RNA-binding domain
EE66_RS07045	SM00487	DEAD-like helicases superfamily
EE66_RS07045	SM00490	helicase superfamily c-terminal domain
EE66_RS07075	SM00382	ATPases associated with a variety of cellular activities
EE66_RS07075	SM00760	Bacterial dnaA protein helix-turn-helix domain
EE66_RS07140	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
EE66_RS07140	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
EE66_RS07160	SM00382	ATPases associated with a variety of cellular activities
EE66_RS07190	SM00479	EE66_RS07190
EE66_RS07240	SM01323	EE66_RS07240
EE66_RS07290	SM00487	DEAD-like helicases superfamily
EE66_RS07290	SM00490	helicase superfamily c-terminal domain
EE66_RS07290	SM00982	EE66_RS07290
EE66_RS07290	SM01058	CarD-like/TRCF domain
EE66_RS07395	SM00257	Lysin motif
EE66_RS07415	SM00382	ATPases associated with a variety of cellular activities
EE66_RS07415	SM00930	EE66_RS07415
EE66_RS07495	SM00947	Carbonic anhydrase
EE66_RS07500	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
EE66_RS07545	SM00883	Chaperonin 10 Kd subunit
EE66_RS07550	SM00400	zinc finger
EE66_RS07550	SM00493	EE66_RS07550
EE66_RS07590	SM00260	Two component signalling adaptor domain
EE66_RS07590	SM00448	cheY-homologous receiver domain
EE66_RS07600	SM00014	Acid phosphatase homologues
EE66_RS07615	SM00477	DNA/RNA non-specific endonuclease
EE66_RS07625	SM00382	ATPases associated with a variety of cellular activities
EE66_RS07625	SM00464	Found in ATP-dependent protease La (LON)
EE66_RS07650	SM00382	ATPases associated with a variety of cellular activities
EE66_RS07650	SM00994	ClpX C4-type zinc finger
EE66_RS07650	SM01086	C-terminal, D2-small domain, of ClpB protein
EE66_RS07690	SM00448	cheY-homologous receiver domain
EE66_RS07690	SM00862	Transcriptional regulatory protein, C terminal
EE66_RS07695	SM00387	Histidine kinase-like ATPases
EE66_RS07695	SM00388	His Kinase A (phosphoacceptor) domain
EE66_RS07750	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EE66_RS07750	SM00245	tail specific protease
EE66_RS07760	SM00563	Phosphate acyltransferases
EE66_RS07765	SM00986	Uracil DNA glycosylase superfamily
EE66_RS07765	SM00987	UreE urease accessory protein, C-terminal domain 
EE66_RS07770	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
