locus-tag	class	description
CEP79_RS00010	COG0670	Belongs to the BI1 family
CEP79_RS00015	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CEP79_RS00030	COG1942	4-Oxalocrotonate Tautomerase
CEP79_RS00035	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CEP79_RS00040	COG0585	pseudouridine synthase activity
CEP79_RS00045	COG0501	Belongs to the peptidase M48B family
CEP79_RS00060	COG0302	gtp cyclohydrolase
CEP79_RS00065	COG0142	geranyltranstransferase activity
CEP79_RS00070	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CEP79_RS00080	COG0720	synthase
CEP79_RS00085	COG0602	queuosine metabolic process
CEP79_RS00100	COG0477	Major facilitator Superfamily
CEP79_RS00110	COG0765	amino acid transport
CEP79_RS00115	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CEP79_RS00120	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CEP79_RS00125	COG1115	amino acid carrier protein
CEP79_RS00130	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CEP79_RS00135	COG0251	oxidation-reduction process
CEP79_RS00160	COG1757	Na H antiporter
CEP79_RS00175	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CEP79_RS00180	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CEP79_RS00190	COG1546	Belongs to the CinA family
CEP79_RS00190	COG1058	Belongs to the CinA family
CEP79_RS00200	COG0778	Nitroreductase
CEP79_RS00205	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CEP79_RS00210	COG0564	pseudouridine synthase activity
CEP79_RS00215	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CEP79_RS00215	COG1519	Transferase
CEP79_RS00225	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CEP79_RS00230	COG0752	glycyl-tRNA synthetase alpha subunit
CEP79_RS00235	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CEP79_RS00285	COG0751	glycine-tRNA ligase activity
CEP79_RS00295	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CEP79_RS00300	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CEP79_RS00305	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CEP79_RS00310	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CEP79_RS00315	COG0849	cell division
CEP79_RS00320	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CEP79_RS00330	COG0668	transmembrane transport
CEP79_RS00395	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CEP79_RS00420	COG1192	Involved in chromosome partitioning
CEP79_RS00445	COG3550	peptidyl-serine autophosphorylation
CEP79_RS00450	COG4974	Belongs to the 'phage' integrase family
CEP79_RS00540	COG1598	PFAM Uncharacterised protein family UPF0150
CEP79_RS00550	COG1166	arginine decarboxylase activity
CEP79_RS00565	COG0500	methyltransferase
CEP79_RS00575	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CEP79_RS00575	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CEP79_RS00580	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CEP79_RS00585	COG0668	transmembrane transport
CEP79_RS00620	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CEP79_RS00620	COG0519	Catalyzes the synthesis of GMP from XMP
CEP79_RS00640	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CEP79_RS00645	COG0537	adenosine 5'-monophosphoramidase activity
CEP79_RS00650	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CEP79_RS00655	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CEP79_RS00655	COG0072	phenylalanine-tRNA ligase activity
CEP79_RS00660	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CEP79_RS00670	COG0539	negative regulation of cytoplasmic translation
CEP79_RS00670	COG1185	polyribonucleotide nucleotidyltransferase activity
CEP79_RS00680	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CEP79_RS00685	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CEP79_RS00690	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CEP79_RS00700	COG0835	chemotaxis
CEP79_RS00700	COG0784	Response regulator, receiver
CEP79_RS00705	COG2198	Histidine kinase
CEP79_RS00705	COG0643	Histidine kinase
CEP79_RS00705	COG0784	Response regulator, receiver
CEP79_RS00710	COG0835	chemotaxis
CEP79_RS00715	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CEP79_RS00720	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CEP79_RS00725	COG2226	methyltransferase
CEP79_RS00730	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CEP79_RS00755	COG0501	Belongs to the peptidase M48B family
CEP79_RS00760	COG2890	protein-(glutamine-N5) methyltransferase activity
CEP79_RS00765	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CEP79_RS00775	COG1333	cytochrome c biogenesis protein
CEP79_RS00775	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CEP79_RS00785	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CEP79_RS00795	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CEP79_RS00805	COG0717	Belongs to the dCTP deaminase family
CEP79_RS00810	COG0511	ligase activity, forming carbon-carbon bonds
CEP79_RS00815	COG0439	Biotin carboxylase
CEP79_RS00835	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CEP79_RS00845	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CEP79_RS00850	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CEP79_RS00860	COG0101	tRNA pseudouridine synthase activity
CEP79_RS00890	COG4221	oxidoreductase activity
CEP79_RS00895	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEP79_RS00900	COG0800	Aldolase
CEP79_RS00905	COG0129	dihydroxy-acid dehydratase activity
CEP79_RS00910	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CEP79_RS00915	COG0363	glucosamine-6-phosphate deaminase activity
CEP79_RS00920	COG0837	glucose binding
CEP79_RS00925	COG1064	alcohol dehydrogenase
CEP79_RS00950	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CEP79_RS00960	COG0674	pyruvate-flavodoxin oxidoreductase activity
CEP79_RS00965	COG1013	pyruvate-flavodoxin oxidoreductase activity
CEP79_RS00970	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CEP79_RS00980	COG0556	nucleotide-excision repair
CEP79_RS01010	COG0405	Gamma-glutamyltransferase
CEP79_RS01045	COG1047	Peptidyl-prolyl cis-trans
CEP79_RS01055	COG2885	chlorophyll binding
CEP79_RS01060	COG0823	Involved in the tonB-independent uptake of proteins
CEP79_RS01070	COG0848	biopolymer transport protein
CEP79_RS01075	COG0811	peptide transport
CEP79_RS01085	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CEP79_RS01090	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CEP79_RS01105	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CEP79_RS01115	COG1475	DNA binding
CEP79_RS01120	COG1192	Involved in chromosome partitioning
CEP79_RS01125	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CEP79_RS01125	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CEP79_RS01130	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CEP79_RS01170	COG0335	large ribosomal subunit rRNA binding
CEP79_RS01175	COG0336	Belongs to the RNA methyltransferase TrmD family
CEP79_RS01180	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CEP79_RS01190	COG0228	four-way junction DNA binding
CEP79_RS01195	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CEP79_RS01200	COG0525	valine-tRNA ligase activity
CEP79_RS01210	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CEP79_RS01225	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CEP79_RS01230	COG2184	nucleotidyltransferase activity
CEP79_RS01235	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CEP79_RS01240	COG0716	FMN binding
CEP79_RS01255	COG0492	ferredoxin-NADP+ reductase activity
CEP79_RS01265	COG0166	Belongs to the GPI family
CEP79_RS01275	COG1966	Carbon starvation protein
CEP79_RS01285	COG0765	amino acid transport
CEP79_RS01290	COG1126	abc transporter atp-binding protein
CEP79_RS01305	COG0738	Major facilitator superfamily
CEP79_RS01310	COG2252	PERMEase
CEP79_RS01325	COG0813	purine-nucleoside phosphorylase activity
CEP79_RS01330	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CEP79_RS01335	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CEP79_RS01345	COG2814	Major facilitator Superfamily
CEP79_RS01350	COG0037	tRNA processing
CEP79_RS01355	COG0569	domain protein
CEP79_RS01355	COG0475	glutathione-regulated potassium exporter activity
CEP79_RS01365	COG2814	Major facilitator Superfamily
CEP79_RS01380	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CEP79_RS01385	COG0124	histidyl-tRNA synthetase
CEP79_RS01390	COG0859	PFAM glycosyl transferase family 9
CEP79_RS01405	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CEP79_RS01420	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CEP79_RS01420	COG0085	RNA polymerase activity
CEP79_RS01435	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CEP79_RS01440	COG0081	regulation of translation
CEP79_RS01450	COG0250	Participates in transcription elongation, termination and antitermination
CEP79_RS01495	COG1132	(ABC) transporter
CEP79_RS01515	COG1045	serine acetyltransferase
CEP79_RS01535	COG1185	polyribonucleotide nucleotidyltransferase activity
CEP79_RS01545	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CEP79_RS01555	COG0151	Belongs to the GarS family
CEP79_RS01565	COG1131	(ABC) transporter
CEP79_RS01570	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CEP79_RS01590	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CEP79_RS01595	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CEP79_RS01600	COG2863	cytochrome
CEP79_RS01605	COG0494	nUDIX hydrolase
CEP79_RS01610	COG0527	aspartate kinase activity
CEP79_RS01625	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CEP79_RS01640	COG0697	spore germination
CEP79_RS01655	COG0505	Belongs to the CarA family
CEP79_RS01675	COG0424	maF-like protein
CEP79_RS01680	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CEP79_RS01700	COG0629	single-stranded DNA binding
CEP79_RS01705	COG0360	Binds together with S18 to 16S ribosomal RNA
CEP79_RS01710	COG1466	dna polymerase III delta subunit
CEP79_RS01715	COG0557	exoribonuclease II activity
CEP79_RS01720	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CEP79_RS01730	COG4174	ABC transporter (Permease)
CEP79_RS01735	COG4166	transmembrane transport
CEP79_RS01740	COG0180	Tryptophanyl-tRNA synthetase
CEP79_RS01750	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CEP79_RS01755	COG0233	cytoplasmic translational termination
CEP79_RS01760	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CEP79_RS01770	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CEP79_RS01775	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CEP79_RS01780	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CEP79_RS01810	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CEP79_RS01815	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CEP79_RS01820	COG0839	Belongs to the complex I subunit 6 family
CEP79_RS01830	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CEP79_RS01840	COG1007	ATP synthesis coupled electron transport
CEP79_RS01860	COG0159	tryptophan synthase activity
CEP79_RS01865	COG0133	tryptophan synthase activity
CEP79_RS01870	COG0134	indole-3-glycerol-phosphate synthase activity
CEP79_RS01870	COG0135	phosphoribosylanthranilate isomerase activity
CEP79_RS01875	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CEP79_RS01880	COG0512	Glutamine amidotransferase of anthranilate synthase
CEP79_RS01885	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CEP79_RS01890	COG0859	PFAM glycosyl transferase family 9
CEP79_RS01900	COG2353	YceI-like domain
CEP79_RS01905	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CEP79_RS01935	COG0203	ribosomal protein L17
CEP79_RS01940	COG0202	RNA polymerase activity
CEP79_RS01945	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CEP79_RS01965	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CEP79_RS01970	COG0024	Methionine aminopeptidase
CEP79_RS01975	COG0201	protein transport
CEP79_RS01980	COG0200	Binds to the 23S rRNA
CEP79_RS01990	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CEP79_RS01995	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CEP79_RS02010	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CEP79_RS02015	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CEP79_RS02030	COG0255	Belongs to the universal ribosomal protein uL29 family
CEP79_RS02040	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CEP79_RS02065	COG0088	Forms part of the polypeptide exit tunnel
CEP79_RS02070	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CEP79_RS02090	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CEP79_RS02100	COG0114	fumarate hydratase activity
CEP79_RS02120	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEP79_RS02125	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CEP79_RS02130	COG1687	branched-chain amino acid
CEP79_RS02135	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CEP79_RS02140	COG0484	heat shock protein binding
CEP79_RS02150	COG0482	sulfurtransferase activity
CEP79_RS02160	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CEP79_RS02165	COG0864	Transcriptional regulator
CEP79_RS02170	COG0811	peptide transport
CEP79_RS02175	COG0848	biopolymer transport protein
CEP79_RS02180	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CEP79_RS02190	COG0861	Integral membrane protein TerC family
CEP79_RS02195	COG0598	Magnesium transport protein CorA
CEP79_RS02200	COG0126	phosphoglycerate kinase activity
CEP79_RS02215	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CEP79_RS02220	COG0204	Acyl-transferase
CEP79_RS02230	COG0793	Belongs to the peptidase S41A family
CEP79_RS02250	COG0157	Belongs to the NadC ModD family
CEP79_RS02255	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CEP79_RS02260	COG0688	phosphatidylethanolamine metabolic process
CEP79_RS02275	COG0109	protoheme IX farnesyltransferase activity
CEP79_RS02285	COG0305	Participates in initiation and elongation during chromosome replication
CEP79_RS02290	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CEP79_RS02290	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CEP79_RS02295	COG0642	Histidine kinase
CEP79_RS02300	COG0745	RESPONSE REGULATOR receiver
CEP79_RS02305	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CEP79_RS02315	COG1792	Involved in formation and maintenance of cell shape
CEP79_RS02320	COG1077	Cell shape determining protein MreB Mrl
CEP79_RS02325	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CEP79_RS02330	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CEP79_RS02335	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CEP79_RS02345	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CEP79_RS02355	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CEP79_RS02360	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CEP79_RS02365	COG0287	Prephenate dehydrogenase
CEP79_RS02380	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CEP79_RS02385	COG3421	Type III restriction
CEP79_RS02395	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CEP79_RS02400	COG1295	ribonuclease BN
CEP79_RS02440	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CEP79_RS02445	COG0799	negative regulation of ribosome biogenesis
CEP79_RS02450	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CEP79_RS02465	COG2194	sulfuric ester hydrolase activity
CEP79_RS02470	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CEP79_RS02475	COG1987	bacterial-type flagellum assembly
CEP79_RS02480	COG1157	protein secretion by the type III secretion system
CEP79_RS02485	COG4962	Type ii secretion system protein e
CEP79_RS02490	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CEP79_RS02495	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CEP79_RS02520	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CEP79_RS02525	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CEP79_RS02530	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CEP79_RS02530	COG0517	IMP dehydrogenase activity
CEP79_RS02535	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CEP79_RS02560	COG0788	formyltetrahydrofolate deformylase activity
CEP79_RS02605	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CEP79_RS02610	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CEP79_RS02615	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CEP79_RS02620	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CEP79_RS02625	COG0811	peptide transport
CEP79_RS02630	COG0848	biopolymer transport protein
CEP79_RS02640	COG0594	ribonuclease P activity
CEP79_RS02645	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CEP79_RS02650	COG0706	membrane insertase activity
CEP79_RS02660	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CEP79_RS02700	COG3118	belongs to the thioredoxin family
CEP79_RS02705	COG1187	pseudouridine synthase activity
CEP79_RS02710	COG0587	DNA-directed DNA polymerase activity
CEP79_RS02735	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CEP79_RS02740	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CEP79_RS02750	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CEP79_RS02760	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CEP79_RS02760	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CEP79_RS02780	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CEP79_RS02785	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CEP79_RS02790	COG0163	prenyltransferase activity
CEP79_RS02810	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CEP79_RS02820	COG1722	exodeoxyribonuclease VII activity
CEP79_RS02825	COG2226	methyltransferase
CEP79_RS02830	COG1981	membrane
CEP79_RS02835	COG1739	Uncharacterized protein family UPF0029
CEP79_RS02850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CEP79_RS02860	COG1253	flavin adenine dinucleotide binding
CEP79_RS02865	COG0306	phosphate transporter
CEP79_RS02870	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CEP79_RS02880	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CEP79_RS02885	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CEP79_RS02890	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CEP79_RS02895	COG0193	aminoacyl-tRNA hydrolase activity
CEP79_RS02920	COG2217	Heavy metal translocating P-type atpase
CEP79_RS02925	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CEP79_RS02935	COG0786	glutamate:sodium symporter activity
CEP79_RS02945	COG0348	domain, Protein
CEP79_RS02950	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CEP79_RS02970	COG1921	L-seryl-tRNASec selenium transferase activity
CEP79_RS02975	COG0195	Participates in both transcription termination and antitermination
CEP79_RS03000	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CEP79_RS03015	COG0708	Exodeoxyribonuclease III
CEP79_RS03030	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CEP79_RS03045	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CEP79_RS03050	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
CEP79_RS03070	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CEP79_RS03075	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CEP79_RS03090	COG0010	Belongs to the arginase family
CEP79_RS03095	COG0686	Belongs to the AlaDH PNT family
CEP79_RS03100	COG1064	alcohol dehydrogenase
CEP79_RS03115	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CEP79_RS03120	COG0497	DNA recombination
CEP79_RS03135	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEP79_RS03145	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CEP79_RS03150	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CEP79_RS03165	COG0745	RESPONSE REGULATOR receiver
CEP79_RS03170	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CEP79_RS03180	COG1074	ATP-dependent DNA helicase activity
CEP79_RS03185	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CEP79_RS03190	COG1862	Preprotein translocase
CEP79_RS03195	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CEP79_RS03200	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CEP79_RS03210	COG0495	leucyl-tRNA aminoacylation
CEP79_RS03220	COG0285	dihydrofolate synthase activity
CEP79_RS03230	COG0739	heme binding
CEP79_RS03240	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CEP79_RS03245	COG0723	plastoquinol--plastocyanin reductase activity
CEP79_RS03265	COG1106	Psort location Cytoplasmic, score
CEP79_RS03270	COG0768	penicillin binding
CEP79_RS03285	COG1558	bacterial-type flagellum-dependent cell motility
CEP79_RS03290	COG1815	bacterial-type flagellum-dependent cell motility
CEP79_RS03295	COG0772	Belongs to the SEDS family
CEP79_RS03310	COG0450	alkyl hydroperoxide reductase
CEP79_RS03325	COG0768	penicillin binding
CEP79_RS03335	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CEP79_RS03350	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CEP79_RS03355	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CEP79_RS03360	COG1388	LysM domain
CEP79_RS03360	COG0741	lytic transglycosylase activity
CEP79_RS03365	COG0084	hydrolase, TatD family'
CEP79_RS03370	COG0307	riboflavin synthase, alpha
CEP79_RS03380	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CEP79_RS03385	COG2011	ABC-type metal ion transport system permease component
CEP79_RS03395	COG0671	phosphoesterase, PA-phosphatase related
CEP79_RS03400	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CEP79_RS03405	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CEP79_RS03410	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CEP79_RS03415	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CEP79_RS03420	COG4786	Flagellar basal body rod
CEP79_RS03435	COG4735	regulation of single-species biofilm formation
CEP79_RS03440	COG4735	regulation of single-species biofilm formation
CEP79_RS03455	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CEP79_RS03460	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CEP79_RS03465	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CEP79_RS03470	COG0288	reversible hydration of carbon dioxide
CEP79_RS03475	COG0284	orotidine-5'-phosphate decarboxylase activity
CEP79_RS03480	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CEP79_RS03520	COG0459	protein refolding
CEP79_RS03525	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CEP79_RS03535	COG0358	DNA primase activity
CEP79_RS03540	COG0482	sulfurtransferase activity
CEP79_RS03575	COG0784	Response regulator, receiver
CEP79_RS03575	COG0835	chemotaxis
CEP79_RS03585	COG0671	phosphoesterase, PA-phosphatase related
CEP79_RS03590	COG2194	sulfuric ester hydrolase activity
CEP79_RS03600	COG0372	Belongs to the citrate synthase family
CEP79_RS03605	COG0538	isocitrate dehydrogenase activity
CEP79_RS03615	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CEP79_RS03625	COG0589	response to stress
CEP79_RS03630	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CEP79_RS03635	COG0542	response to heat
CEP79_RS03640	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CEP79_RS03645	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CEP79_RS03685	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
CEP79_RS03705	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CEP79_RS03710	COG2957	Belongs to the agmatine deiminase family
CEP79_RS03745	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CEP79_RS03815	COG0829	nickel cation binding
CEP79_RS03825	COG0830	nickel cation binding
CEP79_RS03830	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
CEP79_RS03840	COG0804	urea catabolic process
CEP79_RS03845	COG0831	urea catabolic process
CEP79_RS03845	COG0832	Belongs to the urease beta subunit family
CEP79_RS03855	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CEP79_RS03860	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CEP79_RS03870	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CEP79_RS03885	COG0840	transmembrane signaling receptor activity
CEP79_RS03905	COG0579	oxidoreductase
CEP79_RS03915	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CEP79_RS03920	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CEP79_RS03925	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CEP79_RS03960	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CEP79_RS03970	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CEP79_RS03985	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CEP79_RS04005	COG0840	transmembrane signaling receptor activity
CEP79_RS04010	COG0737	Belongs to the 5'-nucleotidase family
CEP79_RS04015	COG1854	S-ribosylhomocysteine lyase activity
CEP79_RS04020	COG0626	cystathionine gamma-synthase activity
CEP79_RS04025	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CEP79_RS04035	COG0443	Heat shock 70 kDa protein
CEP79_RS04040	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CEP79_RS04045	COG1420	regulation of RNA biosynthetic process
CEP79_RS04065	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CEP79_RS04070	COG0551	DNA topoisomerase type I activity
CEP79_RS04070	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CEP79_RS04075	COG0731	radical SAM domain protein
CEP79_RS04085	COG0574	Belongs to the PEP-utilizing enzyme family
CEP79_RS04085	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CEP79_RS04095	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CEP79_RS04100	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CEP79_RS04135	COG1760	l-serine dehydratase
CEP79_RS04140	COG0814	amino acid
CEP79_RS04145	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CEP79_RS04155	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CEP79_RS04165	COG1139	Iron-sulfur cluster binding protein
CEP79_RS04170	COG0247	lactate metabolic process
CEP79_RS04175	COG1620	l-lactate permease
CEP79_RS04180	COG1620	l-lactate permease
CEP79_RS04185	COG1194	a g-specific adenine glycosylase
CEP79_RS04190	COG0471	metal ion transport
CEP79_RS04195	COG3278	Belongs to the heme-copper respiratory oxidase family
CEP79_RS04240	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CEP79_RS04245	COG0148	phosphopyruvate hydratase activity
CEP79_RS04260	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CEP79_RS04275	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEP79_RS04285	COG0217	transcriptional regulatory protein
CEP79_RS04290	COG0113	porphobilinogen synthase activity
CEP79_RS04295	COG0642	Histidine kinase
CEP79_RS04300	COG0745	RESPONSE REGULATOR receiver
CEP79_RS04315	COG0826	peptidase U32
CEP79_RS04325	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CEP79_RS04330	COG0303	'Molybdopterin
CEP79_RS04350	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CEP79_RS04355	COG0191	fructose-bisphosphate aldolase activity
CEP79_RS04360	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CEP79_RS04380	COG2089	acid synthase
CEP79_RS04385	COG1136	(ABC) transporter
CEP79_RS04390	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CEP79_RS04400	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CEP79_RS04405	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CEP79_RS04425	COG2862	Uncharacterized protein family, UPF0114
CEP79_RS04430	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CEP79_RS04435	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CEP79_RS04440	COG1053	succinate dehydrogenase
CEP79_RS04450	COG0149	triose-phosphate isomerase activity
CEP79_RS04455	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CEP79_RS04460	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CEP79_RS04465	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CEP79_RS04470	COG0105	UTP biosynthetic process
CEP79_RS04485	COG0416	fatty acid biosynthetic process
CEP79_RS04490	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CEP79_RS04515	COG0489	protein tyrosine kinase activity
CEP79_RS04535	COG0326	Molecular chaperone. Has ATPase activity
CEP79_RS04540	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEP79_RS04545	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CEP79_RS04550	COG0445	tRNA wobble uridine modification
CEP79_RS04555	COG0471	metal ion transport
CEP79_RS04560	COG0575	Belongs to the CDS family
CEP79_RS04565	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CEP79_RS04575	COG1881	PFAM PEBP family protein
CEP79_RS04590	COG1104	cysteine desulfurase activity
CEP79_RS04605	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CEP79_RS04610	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CEP79_RS04610	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CEP79_RS04615	COG0730	response to heat
CEP79_RS04625	COG0659	secondary active sulfate transmembrane transporter activity
CEP79_RS04640	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CEP79_RS04655	COG0754	glutathionylspermidine amidase activity
CEP79_RS04665	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEP79_RS04680	COG0181	hydroxymethylbilane synthase activity
CEP79_RS04690	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CEP79_RS04710	COG0783	Belongs to the Dps family
CEP79_RS04715	COG0642	Histidine kinase
CEP79_RS04720	COG3951	Flagellar rod assembly protein muramidase FlgJ
CEP79_RS04725	COG1706	bacterial-type flagellum-dependent cell motility
CEP79_RS04730	COG0513	Belongs to the DEAD box helicase family
CEP79_RS04745	COG4172	Belongs to the ABC transporter superfamily
CEP79_RS04750	COG4239	(ABC) transporter, permease
CEP79_RS04770	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CEP79_RS04785	COG0750	zinc metalloprotease
CEP79_RS04790	COG1570	exodeoxyribonuclease VII activity
CEP79_RS04815	COG0542	response to heat
CEP79_RS04820	COG0785	Cytochrome C biogenesis protein
CEP79_RS04825	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CEP79_RS04830	COG0402	S-adenosylhomocysteine deaminase activity
CEP79_RS04840	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CEP79_RS04865	COG0727	PFAM Uncharacterised protein family (UPF0153)
CEP79_RS04875	COG0134	indole-3-glycerol-phosphate synthase activity
CEP79_RS04885	COG0248	Ppx GppA phosphatase
CEP79_RS04890	COG0859	PFAM glycosyl transferase family 9
CEP79_RS04900	COG0343	queuine tRNA-ribosyltransferase activity
CEP79_RS04910	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CEP79_RS04920	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CEP79_RS04925	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CEP79_RS04945	COG0019	diaminopimelate decarboxylase activity
CEP79_RS04960	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CEP79_RS04980	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CEP79_RS04985	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CEP79_RS04990	COG0747	negative chemotaxis
CEP79_RS04995	COG0601	transmembrane transport
CEP79_RS05000	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CEP79_RS05005	COG0444	Belongs to the ABC transporter superfamily
CEP79_RS05010	COG4608	Belongs to the ABC transporter superfamily
CEP79_RS05015	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CEP79_RS05030	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CEP79_RS05045	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CEP79_RS05060	COG0523	cobalamin synthesis protein
CEP79_RS05075	COG1131	(ABC) transporter
CEP79_RS05080	COG0748	coenzyme F420 binding
CEP79_RS05085	COG0018	arginyl-trna synthetase
CEP79_RS05090	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CEP79_RS05095	COG0194	GDP metabolic process
CEP79_RS05115	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CEP79_RS05120	COG3980	spore coat polysaccharide biosynthesis protein
CEP79_RS05125	COG3980	spore coat polysaccharide biosynthesis protein
CEP79_RS05130	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CEP79_RS05135	COG1663	tetraacyldisaccharide 4'-kinase activity
CEP79_RS05140	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CEP79_RS05150	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CEP79_RS05155	COG2894	cell division
CEP79_RS05160	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CEP79_RS05165	COG0758	DNA mediated transformation
CEP79_RS05165	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CEP79_RS05170	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CEP79_RS05175	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CEP79_RS05190	COG0564	pseudouridine synthase activity
CEP79_RS05195	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CEP79_RS05195	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CEP79_RS05200	COG0504	CTP synthase activity
CEP79_RS05210	COG1766	The M ring may be actively involved in energy transduction
CEP79_RS05215	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CEP79_RS05225	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CEP79_RS05230	COG0481	GTPase activity
CEP79_RS05250	COG4786	Flagellar basal body rod
CEP79_RS05255	COG0477	Major facilitator Superfamily
CEP79_RS05260	COG1674	ftsk spoiiie
CEP79_RS05270	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CEP79_RS05275	COG0196	riboflavin kinase activity
CEP79_RS05280	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CEP79_RS05290	COG0540	Belongs to the ATCase OTCase family
CEP79_RS05300	COG1132	(ABC) transporter
CEP79_RS05315	COG1106	Psort location Cytoplasmic, score
CEP79_RS05325	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CEP79_RS05345	COG2608	mercury ion transmembrane transporter activity
CEP79_RS05350	COG2217	Heavy metal translocating P-type atpase
CEP79_RS05355	COG1183	phosphatidylcholine synthase activity
CEP79_RS05365	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CEP79_RS05370	COG2264	protein methyltransferase activity
CEP79_RS05375	COG0745	RESPONSE REGULATOR receiver
CEP79_RS05400	COG0357	Ribosomal RNA small subunit methyltransferase G
CEP79_RS05405	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CEP79_RS05410	COG0805	protein transport
CEP79_RS05415	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CEP79_RS05420	COG2255	four-way junction helicase activity
CEP79_RS05425	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CEP79_RS05450	COG0850	regulation of cytokinetic process
CEP79_RS05455	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CEP79_RS05465	COG0083	homoserine kinase activity
CEP79_RS05475	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CEP79_RS05480	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CEP79_RS05485	COG0779	Required for maturation of 30S ribosomal subunits
CEP79_RS05490	COG1408	metallophosphoesterase
CEP79_RS05495	COG0745	RESPONSE REGULATOR receiver
CEP79_RS05505	COG2404	hydrolase activity, acting on ester bonds
CEP79_RS05510	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CEP79_RS05515	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CEP79_RS05530	COG0006	proline dipeptidase activity
CEP79_RS05535	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CEP79_RS05540	COG1419	protein localization to endoplasmic reticulum
CEP79_RS05545	COG0455	bacterial-type flagellum organization
CEP79_RS05560	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CEP79_RS05565	COG1776	CheC inhibitor of MCP methylation
CEP79_RS05565	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CEP79_RS05580	COG0735	belongs to the Fur family
CEP79_RS05585	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CEP79_RS05585	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CEP79_RS05590	COG0789	Transcriptional regulator
CEP79_RS05595	COG0484	heat shock protein binding
CEP79_RS05615	COG0745	RESPONSE REGULATOR receiver
CEP79_RS05620	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CEP79_RS05620	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CEP79_RS05630	COG0833	amino acid
CEP79_RS05635	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CEP79_RS05645	COG1028	Short-chain dehydrogenase reductase Sdr
CEP79_RS05650	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CEP79_RS05665	COG0167	dihydroorotate dehydrogenase activity
CEP79_RS05670	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CEP79_RS05760	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CEP79_RS05780	COG1217	gtp-binding protein TYPA
CEP79_RS05855	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CEP79_RS05860	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CEP79_RS05870	COG0824	Thioesterase
CEP79_RS05875	COG0733	neurotransmitter:sodium symporter activity
CEP79_RS05880	COG0733	neurotransmitter:sodium symporter activity
CEP79_RS05885	COG0733	neurotransmitter:sodium symporter activity
CEP79_RS05895	COG0592	DNA-directed DNA polymerase activity
CEP79_RS05900	COG0187	DNA topoisomerase II activity
CEP79_RS05915	COG0739	heme binding
CEP79_RS05915	COG1196	nuclear chromosome segregation
CEP79_RS05915	COG0741	lytic transglycosylase activity
CEP79_RS05930	COG0277	FAD linked oxidase domain protein
CEP79_RS05935	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CEP79_RS05945	COG0174	glutamine synthetase
CEP79_RS05955	COG0359	binds to the 23S rRNA
CEP79_RS05960	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CEP79_RS05965	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CEP79_RS05970	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CEP79_RS06120	COG3451	type IV secretory pathway VirB4
CEP79_RS06140	COG1842	Phage shock protein A
CEP79_RS06155	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CEP79_RS06160	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CEP79_RS06170	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CEP79_RS06195	COG0825	malonyl-CoA metabolic process
CEP79_RS06200	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CEP79_RS06205	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CEP79_RS06210	COG1028	Short-chain dehydrogenase reductase Sdr
CEP79_RS06235	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CEP79_RS06240	COG0628	permease
CEP79_RS06250	COG0012	GTP binding
CEP79_RS06255	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CEP79_RS06275	COG0698	ribose 5-phosphate isomerase
CEP79_RS06280	COG1994	Peptidase M50
CEP79_RS06285	COG0681	Belongs to the peptidase S26 family
CEP79_RS06290	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CEP79_RS06310	COG0418	dihydroorotase activity
CEP79_RS06325	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CEP79_RS06325	COG1776	CheC inhibitor of MCP methylation
CEP79_RS06330	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CEP79_RS06335	COG1918	ferrous iron import across plasma membrane
CEP79_RS06355	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CEP79_RS06355	COG0674	pyruvate-flavodoxin oxidoreductase activity
CEP79_RS06360	COG1013	pyruvate-flavodoxin oxidoreductase activity
CEP79_RS06395	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CEP79_RS06400	COG0156	8-amino-7-oxononanoate synthase activity
CEP79_RS06405	COG0840	transmembrane signaling receptor activity
CEP79_RS06415	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CEP79_RS06430	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CEP79_RS06465	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CEP79_RS06470	COG0784	Response regulator, receiver
CEP79_RS06470	COG0835	chemotaxis
CEP79_RS06475	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CEP79_RS06480	COG0563	adenylate kinase activity
CEP79_RS06495	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CEP79_RS06500	COG1193	negative regulation of DNA recombination
CEP79_RS06510	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CEP79_RS06515	COG0436	Aminotransferase
CEP79_RS06525	COG2171	N-acyltransferase activity
CEP79_RS06540	COG2249	NAD(P)H dehydrogenase (quinone) activity
CEP79_RS06545	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CEP79_RS06550	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CEP79_RS06555	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CEP79_RS06560	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CEP79_RS06565	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CEP79_RS06585	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CEP79_RS06595	COG2084	Dehydrogenase
CEP79_RS06600	COG0778	Nitroreductase
CEP79_RS06610	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CEP79_RS06615	COG0762	integral membrane protein
CEP79_RS06640	COG1027	Aspartate ammonia-lyase
CEP79_RS06655	COG0560	Phosphoserine phosphatase
CEP79_RS06660	COG1528	Iron-storage protein
CEP79_RS06665	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CEP79_RS06670	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CEP79_RS06675	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
CEP79_RS06685	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CEP79_RS06700	COG0328	RNA-DNA hybrid ribonuclease activity
CEP79_RS06705	COG0571	ribonuclease III activity
CEP79_RS06710	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CEP79_RS06720	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CEP79_RS06750	COG4974	Belongs to the 'phage' integrase family
CEP79_RS06760	COG0730	response to heat
CEP79_RS06770	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CEP79_RS06785	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CEP79_RS06795	COG1338	Plays a role in the flagellum-specific transport system
CEP79_RS06805	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CEP79_RS06825	COG4647	ligase activity
CEP79_RS06830	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
CEP79_RS06835	COG0145	ligase activity
CEP79_RS06845	COG2031	fatty acid transporter
CEP79_RS06850	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CEP79_RS06855	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CEP79_RS06860	COG0183	Belongs to the thiolase family
CEP79_RS06870	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CEP79_RS06875	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CEP79_RS06885	COG2204	response regulator
CEP79_RS06890	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CEP79_RS06900	COG0275	rRNA processing
CEP79_RS06915	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
CEP79_RS06930	COG3177	Filamentation induced by cAMP protein fic
CEP79_RS06935	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CEP79_RS06940	COG1137	ATPase activity
CEP79_RS06950	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CEP79_RS06955	COG1279	arginine transmembrane transporter activity
CEP79_RS06975	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CEP79_RS06980	COG0252	asparaginase activity
CEP79_RS06995	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CEP79_RS07000	COG0037	tRNA processing
CEP79_RS07025	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CEP79_RS07030	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
CEP79_RS07035	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CEP79_RS07040	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CEP79_RS07045	COG1181	Belongs to the D-alanine--D-alanine ligase family
CEP79_RS07055	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CEP79_RS07065	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CEP79_RS07075	COG0772	Belongs to the SEDS family
CEP79_RS07085	COG1162	GTPase activity
CEP79_RS07090	COG0564	pseudouridine synthase activity
CEP79_RS07100	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CEP79_RS07105	COG2884	Cell division ATP-binding protein ftsE
CEP79_RS07155	COG2056	Na+-H+ antiporter family
CEP79_RS07160	COG0534	Mate efflux family protein
CEP79_RS07165	COG1418	mRNA catabolic process
CEP79_RS07180	COG0552	protein localization to endoplasmic reticulum
CEP79_RS07220	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CEP79_RS07225	COG0746	molybdenum cofactor guanylyltransferase activity
CEP79_RS07230	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CEP79_RS07240	COG0860	N-Acetylmuramoyl-L-alanine amidase
CEP79_RS07250	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CEP79_RS07260	COG1758	RNA polymerase activity
CEP79_RS07265	COG0528	UMP kinase activity
CEP79_RS07275	COG1049	propionate catabolic process, 2-methylcitrate cycle
CEP79_RS07310	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CEP79_RS07315	COG0653	protein targeting
CEP79_RS07335	COG2217	Heavy metal translocating P-type atpase
CEP79_RS07340	COG0606	chelatase, subunit chli
CEP79_RS07345	COG0242	peptide deformylase activity
CEP79_RS07350	COG0740	serine-type endopeptidase activity
CEP79_RS07355	COG0544	peptidyl-prolyl cis-trans isomerase activity
CEP79_RS07370	COG0315	cyclic pyranopterin monophosphate synthase activity
CEP79_RS07375	COG0521	Mo-molybdopterin cofactor biosynthetic process
CEP79_RS07380	COG0314	molybdopterin synthase activity
CEP79_RS07390	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CEP79_RS07400	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CEP79_RS07400	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CEP79_RS07420	COG0736	holo-[acyl-carrier-protein] synthase activity
CEP79_RS07425	COG1580	Controls the rotational direction of flagella during chemotaxis
CEP79_RS07445	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CEP79_RS07450	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CEP79_RS07455	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CEP79_RS07460	COG1360	Flagellar Motor Protein
CEP79_RS07485	COG1732	Glycine betaine
CEP79_RS07490	COG1125	glycine betaine transport
CEP79_RS07490	COG0517	IMP dehydrogenase activity
CEP79_RS07505	COG0322	excinuclease ABC activity
CEP79_RS07510	COG0460	homoserine dehydrogenase
CEP79_RS07515	COG0792	nuclease activity
CEP79_RS07520	COG3118	belongs to the thioredoxin family
CEP79_RS07525	COG0492	ferredoxin-NADP+ reductase activity
CEP79_RS07535	COG0724	RNA recognition motif
CEP79_RS07545	COG0517	IMP dehydrogenase activity
CEP79_RS07545	COG0516	GMP reductase activity
CEP79_RS07555	COG0237	dephospho-CoA kinase activity
CEP79_RS07560	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CEP79_RS07570	COG1160	GTP binding
CEP79_RS07575	COG0776	regulation of translation
CEP79_RS07600	COG1086	Polysaccharide biosynthesis protein
CEP79_RS07605	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CEP79_RS07615	COG0352	thiamine-phosphate diphosphorylase activity
CEP79_RS07620	COG0351	phosphomethylpyrimidine kinase
CEP79_RS07625	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
CEP79_RS07650	COG0671	phosphoesterase, PA-phosphatase related
CEP79_RS07660	COG0488	(ABC) transporter
CEP79_RS07665	COG0516	GMP reductase activity
CEP79_RS07670	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CEP79_RS07675	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CEP79_RS07675	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CEP79_RS07680	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CEP79_RS07685	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CEP79_RS07695	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CEP79_RS07710	COG0756	dUTP diphosphatase activity
CEP79_RS07715	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CEP79_RS07720	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CEP79_RS07730	COG0375	protein maturation
CEP79_RS07735	COG1749	Flagellar hook protein flgE
CEP79_RS07740	COG2134	cdp-diacylglycerol pyrophosphatase
CEP79_RS07750	COG2824	Alkylphosphonate utilization operon protein PhnA
CEP79_RS07765	COG0753	catalase activity
CEP79_RS07775	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CEP79_RS07795	COG0632	four-way junction helicase activity
CEP79_RS07810	COG0215	cysteine-tRNA ligase activity
CEP79_RS07825	COG1120	ATPase activity
CEP79_RS07830	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CEP79_RS07835	COG0300	oxidoreductase activity
CEP79_RS07840	COG1607	acyl-coa hydrolase
CEP79_RS07850	COG0675	Transposase, IS605 OrfB family
CEP79_RS07875	COG3041	Addiction module toxin RelE StbE family
CEP79_RS07905	COG0409	Hydrogenase expression formation protein
CEP79_RS07910	COG0409	Hydrogenase expression formation protein
CEP79_RS07915	COG0298	carbon dioxide binding
CEP79_RS07920	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CEP79_RS07935	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CEP79_RS07940	COG0280	phosphate acetyltransferase
CEP79_RS07950	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CEP79_RS07955	COG1749	Flagellar hook protein flgE
CEP79_RS07955	COG1749	Flagellar hook protein flgE