locus-tag class description HK440_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix HK440_RS00005 PF00308 Bacterial dnaA protein HK440_RS00020 PF03372 Endonuclease/Exonuclease/phosphatase family HK440_RS00035 PF00271 Helicase conserved C-terminal domain HK440_RS00035 PF04851 Type III restriction enzyme, res subunit HK440_RS00040 PF18273 Type III R-M EcoP15I C-terminal domain HK440_RS00040 PF01555 DNA methylase HK440_RS00045 PF08774 VRR-NUC domain HK440_RS00045 PF04851 Type III restriction enzyme, res subunit HK440_RS00070 PF08529 NusA N-terminal domain HK440_RS00070 PF13184 NusA-like KH domain HK440_RS00075 PF03841 L-seryl-tRNA selenium transferase HK440_RS00095 PF02660 Glycerol-3-phosphate acyltransferase HK440_RS00100 PF12801 4Fe-4S binding domain HK440_RS00100 PF13746 4Fe-4S dicluster domain HK440_RS00100 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HK440_RS00105 PF03435 Saccharopine dehydrogenase NADP binding domain HK440_RS00105 PF16653 Saccharopine dehydrogenase C-terminal domain HK440_RS00110 PF03616 Sodium/glutamate symporter HK440_RS00115 PF01872 RibD C-terminal domain HK440_RS00115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HK440_RS00145 PF02086 D12 class N6 adenine-specific DNA methyltransferase HK440_RS00160 PF01195 Peptidyl-tRNA hydrolase HK440_RS00165 PF01386 Ribosomal L25p family HK440_RS00165 PF14693 Ribosomal protein TL5, C-terminal domain HK440_RS00170 PF00923 Transaldolase/Fructose-6-phosphate aldolase HK440_RS00175 PF08245 Mur ligase middle domain HK440_RS00175 PF02875 Mur ligase family, glutamate ligase domain HK440_RS00185 PF01106 NifU-like domain HK440_RS00190 PF01384 Phosphate transporter family HK440_RS00195 PF00571 CBS domain HK440_RS00195 PF03471 Transporter associated domain HK440_RS00195 PF01595 Cyclin M transmembrane N-terminal domain HK440_RS00205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HK440_RS00220 PF09186 Domain of unknown function (DUF1949) HK440_RS00220 PF01205 Uncharacterized protein family UPF0029 HK440_RS00230 PF01209 ubiE/COQ5 methyltransferase family HK440_RS00235 PF02609 Exonuclease VII small subunit HK440_RS00245 PF02403 Seryl-tRNA synthetase N-terminal domain HK440_RS00245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HK440_RS00255 PF00580 UvrD/REP helicase N-terminal domain HK440_RS00255 PF13361 UvrD-like helicase C-terminal domain HK440_RS00265 PF02441 Flavoprotein HK440_RS00270 PF01467 Cytidylyltransferase-like HK440_RS00275 PF02223 Thymidylate kinase HK440_RS00285 PF02384 N-6 DNA Methylase HK440_RS00295 PF00476 DNA polymerase family A HK440_RS00295 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HK440_RS00295 PF01367 5'-3' exonuclease, C-terminal SAM fold HK440_RS00305 PF01063 Amino-transferase class IV HK440_RS00315 PF02405 Permease MlaE HK440_RS00320 PF00005 ABC transporter HK440_RS00320 PF09383 NIL domain HK440_RS00340 PF00034 Cytochrome c HK440_RS00340 PF03150 Di-haem cytochrome c peroxidase HK440_RS00345 PF07733 Bacterial DNA polymerase III alpha NTPase domain HK440_RS00345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HK440_RS00345 PF14579 Helix-hairpin-helix motif HK440_RS00345 PF02811 PHP domain HK440_RS00350 PF00849 RNA pseudouridylate synthase HK440_RS00350 PF01479 S4 domain HK440_RS00355 PF00085 Thioredoxin HK440_RS00365 PF02169 LPP20 lipoprotein HK440_RS00380 PF01420 Type I restriction modification DNA specificity domain HK440_RS00455 PF00437 Type II/IV secretion system protein HK440_RS00480 PF01396 Topoisomerase DNA binding C4 zinc finger HK440_RS00480 PF01751 Toprim domain HK440_RS00480 PF01131 DNA topoisomerase HK440_RS00505 PF13614 AAA domain HK440_RS00560 PF00589 Phage integrase family HK440_RS00560 PF02899 Phage integrase, N-terminal SAM-like domain HK440_RS00570 PF12161 HsdM N-terminal domain HK440_RS00570 PF02384 N-6 DNA Methylase HK440_RS00575 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HK440_RS00575 PF18766 SWI2/SNF2 ATPase HK440_RS00575 PF11867 Domain of unknown function (DUF3387) HK440_RS00585 PF00593 TonB dependent receptor HK440_RS00585 PF07660 Secretin and TonB N terminus short domain HK440_RS00585 PF07715 TonB-dependent Receptor Plug Domain HK440_RS00590 PF00491 Arginase family HK440_RS00595 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HK440_RS00595 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HK440_RS00610 PF01513 ATP-NAD kinase HK440_RS00615 PF02463 RecF/RecN/SMC N terminal domain HK440_RS00620 PF05670 NFACT protein RNA binding domain HK440_RS00630 PF08238 Sel1 repeat HK440_RS00635 PF07733 Bacterial DNA polymerase III alpha NTPase domain HK440_RS00635 PF11490 DNA polymerase III polC-type N-terminus II HK440_RS00635 PF14480 DNA polymerase III polC-type N-terminus I HK440_RS00635 PF02811 PHP domain HK440_RS00635 PF00929 Exonuclease HK440_RS00635 PF14579 Helix-hairpin-helix motif HK440_RS00635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HK440_RS00640 PF00834 Ribulose-phosphate 3 epimerase family HK440_RS00645 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HK440_RS00670 PF00032 Cytochrome b(C-terminal)/b6/petD HK440_RS00670 PF00033 Cytochrome b/b6/petB HK440_RS00675 PF00355 Rieske [2Fe-2S] domain HK440_RS00675 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HK440_RS00680 PF17757 UvrB interaction domain HK440_RS00680 PF02559 CarD-like/TRCF domain HK440_RS00680 PF00270 DEAD/DEAH box helicase HK440_RS00680 PF00271 Helicase conserved C-terminal domain HK440_RS00680 PF03461 TRCF domain HK440_RS00690 PF04225 Opacity-associated protein A LysM-like domain HK440_RS00690 PF01551 Peptidase family M23 HK440_RS00700 PF08245 Mur ligase middle domain HK440_RS00700 PF02875 Mur ligase family, glutamate ligase domain HK440_RS00710 PF13603 Leucyl-tRNA synthetase, Domain 2 HK440_RS00710 PF09334 tRNA synthetases class I (M) HK440_RS00710 PF00133 tRNA synthetases class I (I, L, M and V) HK440_RS00720 PF02355 Protein export membrane protein HK440_RS00720 PF07549 SecD/SecF GG Motif HK440_RS00725 PF02355 Protein export membrane protein HK440_RS00730 PF02699 Preprotein translocase subunit HK440_RS00735 PF06965 Na+/H+ antiporter 1 HK440_RS00740 PF13361 UvrD-like helicase C-terminal domain HK440_RS00740 PF12705 PD-(D/E)XK nuclease superfamily HK440_RS00740 PF00580 UvrD/REP helicase N-terminal domain HK440_RS00745 PF00318 Ribosomal protein S2 HK440_RS00750 PF00889 Elongation factor TS HK440_RS00755 PF00905 Penicillin binding protein transpeptidase domain HK440_RS00755 PF03717 Penicillin-binding Protein dimerisation domain HK440_RS00765 PF02049 Flagellar hook-basal body complex protein FliE HK440_RS00770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HK440_RS00770 PF00460 Flagella basal body rod protein HK440_RS00780 PF01098 Cell cycle protein HK440_RS00795 PF00578 AhpC/TSA family HK440_RS00795 PF10417 C-terminal domain of 1-Cys peroxiredoxin HK440_RS00800 PF03180 NLPA lipoprotein HK440_RS00805 PF00905 Penicillin binding protein transpeptidase domain HK440_RS00805 PF03717 Penicillin-binding Protein dimerisation domain HK440_RS00815 PF01926 50S ribosome-binding GTPase HK440_RS00835 PF05036 Sporulation related domain HK440_RS00835 PF03330 Lytic transglycolase HK440_RS00840 PF01464 Transglycosylase SLT domain HK440_RS00840 PF01476 LysM domain HK440_RS00845 PF01026 TatD related DNase HK440_RS00850 PF00677 Lumazine binding domain HK440_RS00860 PF00005 ABC transporter HK440_RS00860 PF09383 NIL domain HK440_RS00865 PF00528 Binding-protein-dependent transport system inner membrane component HK440_RS00880 PF01569 PAP2 superfamily HK440_RS00885 PF00953 Glycosyl transferase family 4 HK440_RS00890 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HK440_RS00895 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HK440_RS00900 PF00814 Glycoprotease family HK440_RS00905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HK440_RS00905 PF00460 Flagella basal body rod protein HK440_RS00920 PF13099 Domain of unknown function (DUF3944) HK440_RS00920 PF03981 Ubiquinol-cytochrome C chaperone HK440_RS00925 PF13099 Domain of unknown function (DUF3944) HK440_RS00925 PF03981 Ubiquinol-cytochrome C chaperone HK440_RS00930 PF01029 NusB family HK440_RS00935 PF00885 6,7-dimethyl-8-ribityllumazine synthase HK440_RS00940 PF00793 DAHP synthetase I family HK440_RS00945 PF00484 Carbonic anhydrase HK440_RS00950 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HK440_RS00955 PF02569 Pantoate-beta-alanine ligase HK440_RS00990 PF00118 TCP-1/cpn60 chaperonin family HK440_RS00995 PF00166 Chaperonin 10 Kd subunit HK440_RS01000 PF16730 DnaG-primase C-terminal, helicase-binding domain HK440_RS01000 PF08275 DNA primase catalytic core, N-terminal domain HK440_RS01000 PF01807 CHC2 zinc finger HK440_RS01000 PF13662 Toprim domain HK440_RS01040 PF01584 CheW-like domain HK440_RS01040 PF00072 Response regulator receiver domain HK440_RS01045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HK440_RS01050 PF01569 PAP2 superfamily HK440_RS01055 PF00884 Sulfatase HK440_RS01055 PF08019 Phosphoethanolamine transferase EptA/EptB HK440_RS01070 PF07282 Putative transposase DNA-binding domain HK440_RS01070 PF01385 Probable transposase HK440_RS01070 PF12323 Helix-turn-helix domain HK440_RS01075 PF00285 Citrate synthase, C-terminal domain HK440_RS01080 PF00180 Isocitrate/isopropylmalate dehydrogenase HK440_RS01085 PF07509 Protein of unknown function (DUF1523) HK440_RS01105 PF02617 ATP-dependent Clp protease adaptor protein ClpS HK440_RS01110 PF10431 C-terminal, D2-small domain, of ClpB protein HK440_RS01110 PF02861 Clp amino terminal domain, pathogenicity island component HK440_RS01110 PF17871 AAA lid domain HK440_RS01110 PF07724 AAA domain (Cdc48 subfamily) HK440_RS01110 PF00004 ATPase family associated with various cellular activities (AAA) HK440_RS01115 PF02261 Aspartate decarboxylase HK440_RS01120 PF02575 YbaB/EbfC DNA-binding family HK440_RS01155 PF01050 Mannose-6-phosphate isomerase HK440_RS01155 PF00483 Nucleotidyl transferase HK440_RS01160 PF16363 GDP-mannose 4,6 dehydratase HK440_RS01165 PF01370 NAD dependent epimerase/dehydratase family HK440_RS01175 PF00586 AIR synthase related protein, N-terminal domain HK440_RS01175 PF02769 AIR synthase related protein, C-terminal domain HK440_RS01180 PF01300 Telomere recombination HK440_RS01180 PF17788 HypF Kae1-like domain HK440_RS01180 PF00708 Acylphosphatase HK440_RS01180 PF07503 HypF finger HK440_RS01185 PF04371 Porphyromonas-type peptidyl-arginine deiminase HK440_RS01190 PF01555 DNA methylase HK440_RS01200 PF00474 Sodium:solute symporter family HK440_RS01205 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HK440_RS01205 PF14850 DNA-binding domain of Proline dehydrogenase HK440_RS01205 PF00171 Aldehyde dehydrogenase family HK440_RS01205 PF01619 Proline dehydrogenase HK440_RS01265 PF01774 UreD urease accessory protein HK440_RS01270 PF02492 CobW/HypB/UreG, nucleotide-binding domain HK440_RS01275 PF01730 UreF HK440_RS01280 PF05194 UreE urease accessory protein, C-terminal domain HK440_RS01280 PF02814 UreE urease accessory protein, N-terminal domain HK440_RS01285 PF02293 AmiS/UreI family transporter HK440_RS01290 PF01979 Amidohydrolase family HK440_RS01290 PF00449 Urease alpha-subunit, N-terminal domain HK440_RS01295 PF00547 Urease, gamma subunit HK440_RS01295 PF00699 Urease beta subunit HK440_RS01305 PF01252 Signal peptidase (SPase) II HK440_RS01310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HK440_RS01310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HK440_RS01310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HK440_RS01310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HK440_RS01315 PF01649 Ribosomal protein S20 HK440_RS01320 PF03462 PCRF domain HK440_RS01320 PF00472 RF-1 domain HK440_RS01340 PF00672 HAMP domain HK440_RS01340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HK440_RS01340 PF17200 Single Cache domain 2 HK440_RS01345 PF00380 Ribosomal protein S9/S16 HK440_RS01350 PF00572 Ribosomal protein L13 HK440_RS01355 PF17402 Family of unknown function (DUF5408) HK440_RS01360 PF06039 Malate:quinone oxidoreductase (Mqo) HK440_RS01370 PF04545 Sigma-70, region 4 HK440_RS01370 PF04542 Sigma-70 region 2 HK440_RS01370 PF00140 Sigma-70 factor, region 1.2 HK440_RS01370 PF04539 Sigma-70 region 3 HK440_RS01375 PF01048 Phosphorylase superfamily HK440_RS01380 PF00698 Acyl transferase domain HK440_RS01390 PF04556 DpnII restriction endonuclease HK440_RS01395 PF01555 DNA methylase HK440_RS01400 PF01531 Glycosyl transferase family 11 HK440_RS01410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HK440_RS01410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HK440_RS01420 PF00291 Pyridoxal-phosphate dependent enzyme HK440_RS01425 PF00672 HAMP domain HK440_RS01425 PF16591 Helical bimodular sensor domain HK440_RS01425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HK440_RS01430 PF02677 Epoxyqueuosine reductase QueH HK440_RS01440 PF00535 Glycosyl transferase family 2 HK440_RS01445 PF17200 Single Cache domain 2 HK440_RS01445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HK440_RS01445 PF00672 HAMP domain HK440_RS01450 PF00149 Calcineurin-like phosphoesterase HK440_RS01450 PF02872 5'-nucleotidase, C-terminal domain HK440_RS01455 PF02664 S-Ribosylhomocysteinase (LuxS) HK440_RS01460 PF01053 Cys/Met metabolism PLP-dependent enzyme HK440_RS01465 PF00291 Pyridoxal-phosphate dependent enzyme HK440_RS01475 PF00012 Hsp70 protein HK440_RS01480 PF01025 GrpE HK440_RS01505 PF00669 Bacterial flagellin N-terminal helical region HK440_RS01505 PF00700 Bacterial flagellin C-terminal helical region HK440_RS01505 PF07196 Flagellin hook IN motif HK440_RS01510 PF01751 Toprim domain HK440_RS01510 PF01396 Topoisomerase DNA binding C4 zinc finger HK440_RS01510 PF01131 DNA topoisomerase HK440_RS01515 PF04055 Radical SAM superfamily HK440_RS01525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HK440_RS01525 PF02896 PEP-utilising enzyme, TIM barrel domain HK440_RS01525 PF00391 PEP-utilising enzyme, mobile domain HK440_RS01530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HK440_RS01530 PF03129 Anticodon binding domain HK440_RS01530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HK440_RS01535 PF05198 Translation initiation factor IF-3, N-terminal domain HK440_RS01535 PF00707 Translation initiation factor IF-3, C-terminal domain HK440_RS01540 PF01632 Ribosomal protein L35 HK440_RS01545 PF00453 Ribosomal protein L20 HK440_RS01565 PF03315 Serine dehydratase beta chain HK440_RS01565 PF03313 Serine dehydratase alpha chain HK440_RS01570 PF03222 Tryptophan/tyrosine permease family HK440_RS01575 PF01474 Class-II DAHP synthetase family HK440_RS01580 PF00578 AhpC/TSA family HK440_RS01585 PF02589 LUD domain HK440_RS01590 PF02589 LUD domain HK440_RS01590 PF11870 Domain of unknown function (DUF3390) HK440_RS01590 PF13183 4Fe-4S dicluster domain HK440_RS01595 PF02754 Cysteine-rich domain HK440_RS01600 PF02652 L-lactate permease HK440_RS01605 PF02652 L-lactate permease HK440_RS01610 PF14815 NUDIX domain HK440_RS01610 PF00730 HhH-GPD superfamily base excision DNA repair protein HK440_RS01610 PF00633 Helix-hairpin-helix motif HK440_RS01615 PF00939 Sodium:sulfate symporter transmembrane region HK440_RS01620 PF00115 Cytochrome C and Quinol oxidase polypeptide I HK440_RS01635 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HK440_RS01635 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HK440_RS01665 PF00154 recA bacterial DNA recombination protein HK440_RS01670 PF00113 Enolase, C-terminal TIM barrel domain HK440_RS01670 PF03952 Enolase, N-terminal domain HK440_RS01685 PF01202 Shikimate kinase HK440_RS01700 PF08238 Sel1 repeat HK440_RS01705 PF01709 Transcriptional regulator HK440_RS01710 PF00490 Delta-aminolevulinic acid dehydratase HK440_RS01720 PF00486 Transcriptional regulatory protein, C terminal HK440_RS01720 PF00072 Response regulator receiver domain HK440_RS01745 PF00472 RF-1 domain HK440_RS01745 PF03462 PCRF domain HK440_RS01750 PF00994 Probable molybdopterin binding domain HK440_RS01750 PF03454 MoeA C-terminal region (domain IV) HK440_RS01750 PF03453 MoeA N-terminal region (domain I and II) HK440_RS01765 PF00639 PPIC-type PPIASE domain HK440_RS01770 PF01116 Fructose-bisphosphate aldolase class-II HK440_RS01775 PF01132 Elongation factor P (EF-P) OB domain HK440_RS01775 PF08207 Elongation factor P (EF-P) KOW-like domain HK440_RS01775 PF09285 Elongation factor P, C-terminal HK440_RS01785 PF01883 Iron-sulfur cluster assembly protein HK440_RS01785 PF10609 NUBPL iron-transfer P-loop NTPase HK440_RS01805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HK440_RS01805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HK440_RS01810 PF02504 Fatty acid synthesis protein HK440_RS01815 PF01783 Ribosomal L32p protein family HK440_RS01825 PF00334 Nucleoside diphosphate kinase HK440_RS01830 PF00438 S-adenosylmethionine synthetase, N-terminal domain HK440_RS01830 PF02773 S-adenosylmethionine synthetase, C-terminal domain HK440_RS01830 PF02772 S-adenosylmethionine synthetase, central domain HK440_RS01835 PF00132 Bacterial transferase hexapeptide (six repeats) HK440_RS01835 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HK440_RS01845 PF00121 Triosephosphate isomerase HK440_RS01850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HK440_RS01855 PF02910 Fumarate reductase flavoprotein C-term HK440_RS01855 PF00890 FAD binding domain HK440_RS01860 PF13085 2Fe-2S iron-sulfur cluster binding domain HK440_RS01860 PF13183 4Fe-4S dicluster domain HK440_RS01865 PF13091 PLD-like domain HK440_RS01870 PF03350 Uncharacterized protein family, UPF0114 HK440_RS01885 PF00464 Serine hydroxymethyltransferase HK440_RS01890 PF00152 tRNA synthetases class II (D, K and N) HK440_RS01890 PF01336 OB-fold nucleic acid binding domain HK440_RS01900 PF00795 Carbon-nitrogen hydrolase HK440_RS01905 PF00005 ABC transporter HK440_RS01910 PF08666 SAF domain HK440_RS01910 PF03102 NeuB family HK440_RS01925 PF00183 Hsp90 protein HK440_RS01930 PF08238 Sel1 repeat HK440_RS01935 PF07687 Peptidase dimerisation domain HK440_RS01935 PF01546 Peptidase family M20/M25/M40 HK440_RS01940 PF13932 GidA associated domain HK440_RS01940 PF01134 Glucose inhibited division protein A HK440_RS01945 PF00939 Sodium:sulfate symporter transmembrane region HK440_RS01955 PF13288 DXP reductoisomerase C-terminal domain HK440_RS01955 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HK440_RS01955 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HK440_RS01960 PF01161 Phosphatidylethanolamine-binding protein HK440_RS01970 PF00266 Aminotransferase class-V HK440_RS01975 PF04324 BFD-like [2Fe-2S] binding domain HK440_RS01975 PF01106 NifU-like domain HK440_RS01975 PF01592 NifU-like N terminal domain HK440_RS01985 PF18073 Rubredoxin metal binding domain HK440_RS01990 PF01641 SelR domain HK440_RS01990 PF01625 Peptide methionine sulfoxide reductase HK440_RS01995 PF01925 Sulfite exporter TauE/SafE HK440_RS02005 PF01740 STAS domain HK440_RS02005 PF00916 Sulfate permease family HK440_RS02020 PF02348 Cytidylyltransferase HK440_RS02035 PF03738 Glutathionylspermidine synthase preATP-grasp HK440_RS02055 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HK440_RS02055 PF03900 Porphobilinogen deaminase, C-terminal domain HK440_RS02060 PF04073 Aminoacyl-tRNA editing domain HK440_RS02060 PF03129 Anticodon binding domain HK440_RS02060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HK440_RS02065 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HK440_RS02065 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HK440_RS02065 PF01488 Shikimate / quinate 5-dehydrogenase HK440_RS02070 PF00348 Polyprenyl synthetase HK440_RS02085 PF00210 Ferritin-like domain HK440_RS02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HK440_RS02090 PF00512 His Kinase A (phospho-acceptor) domain HK440_RS02100 PF02119 Flagellar P-ring protein HK440_RS02105 PF00271 Helicase conserved C-terminal domain HK440_RS02105 PF00270 DEAD/DEAH box helicase HK440_RS02120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HK440_RS02120 PF00005 ABC transporter HK440_RS02145 PF00709 Adenylosuccinate synthetase HK440_RS02160 PF02163 Peptidase family M50 HK440_RS02165 PF13742 OB-fold nucleic acid binding domain HK440_RS02165 PF02601 Exonuclease VII, large subunit HK440_RS02170 PF01555 DNA methylase HK440_RS02170 PF18273 Type III R-M EcoP15I C-terminal domain HK440_RS02185 PF18643 BsaWI restriction endonuclease type 2 HK440_RS02195 PF07282 Putative transposase DNA-binding domain HK440_RS02195 PF01385 Probable transposase HK440_RS02195 PF12323 Helix-turn-helix domain HK440_RS02210 PF10431 C-terminal, D2-small domain, of ClpB protein HK440_RS02210 PF00004 ATPase family associated with various cellular activities (AAA) HK440_RS02210 PF07724 AAA domain (Cdc48 subfamily) HK440_RS02210 PF02861 Clp amino terminal domain, pathogenicity island component HK440_RS02210 PF17871 AAA lid domain HK440_RS02215 PF02683 Cytochrome C biogenesis protein transmembrane region HK440_RS02220 PF01979 Amidohydrolase family HK440_RS02225 PF01979 Amidohydrolase family HK440_RS02235 PF04055 Radical SAM superfamily HK440_RS02235 PF00919 Uncharacterized protein family UPF0004 HK440_RS02260 PF03692 Putative zinc- or iron-chelating domain HK440_RS02270 PF00218 Indole-3-glycerol phosphate synthase HK440_RS02280 PF02541 Ppx/GppA phosphatase family HK440_RS02285 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HK440_RS02295 PF01702 Queuine tRNA-ribosyltransferase HK440_RS02305 PF01761 3-dehydroquinate synthase HK440_RS02315 PF04055 Radical SAM superfamily HK440_RS02315 PF00919 Uncharacterized protein family UPF0004 HK440_RS02320 PF00004 ATPase family associated with various cellular activities (AAA) HK440_RS02320 PF17862 AAA+ lid domain HK440_RS02320 PF01434 Peptidase family M41 HK440_RS02335 PF02691 Vacuolating cyotoxin HK440_RS02335 PF03797 Autotransporter beta-domain HK440_RS02340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HK440_RS02340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HK440_RS02355 PF04715 Anthranilate synthase component I, N terminal region HK440_RS02355 PF00425 chorismate binding enzyme HK440_RS02370 PF12323 Helix-turn-helix domain HK440_RS02370 PF01385 Probable transposase HK440_RS02370 PF07282 Putative transposase DNA-binding domain HK440_RS02385 PF00829 Ribosomal prokaryotic L21 protein HK440_RS02390 PF01016 Ribosomal L27 protein HK440_RS02395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HK440_RS02400 PF00528 Binding-protein-dependent transport system inner membrane component HK440_RS02405 PF00528 Binding-protein-dependent transport system inner membrane component HK440_RS02405 PF12911 N-terminal TM domain of oligopeptide transport permease C HK440_RS02410 PF00005 ABC transporter HK440_RS02410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HK440_RS02415 PF00005 ABC transporter HK440_RS02415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HK440_RS02420 PF01018 GTP1/OBG HK440_RS02420 PF01926 50S ribosome-binding GTPase HK440_RS02435 PF00202 Aminotransferase class-III HK440_RS02450 PF00795 Carbon-nitrogen hydrolase HK440_RS02455 PF01522 Polysaccharide deacetylase HK440_RS02465 PF02492 CobW/HypB/UreG, nucleotide-binding domain HK440_RS02465 PF07683 Cobalamin synthesis protein cobW C-terminal domain HK440_RS02475 PF01243 Pyridoxamine 5'-phosphate oxidase HK440_RS02475 PF10615 Protein of unknown function (DUF2470) HK440_RS02480 PF03485 Arginyl tRNA synthetase N terminal domain HK440_RS02480 PF00750 tRNA synthetases class I (R) HK440_RS02480 PF05746 DALR anticodon binding domain HK440_RS02485 PF02416 mttA/Hcf106 family HK440_RS02490 PF00625 Guanylate kinase HK440_RS02510 PF02107 Flagellar L-ring protein HK440_RS02515 PF02348 Cytidylyltransferase HK440_RS02520 PF02348 Cytidylyltransferase HK440_RS02530 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HK440_RS02535 PF02540 NAD synthase HK440_RS02545 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HK440_RS02545 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HK440_RS02550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HK440_RS02555 PF03776 Septum formation topological specificity factor MinE HK440_RS02560 PF17782 DprA winged helix domain HK440_RS02560 PF02481 DNA recombination-mediator protein A HK440_RS02565 PF03652 Holliday junction resolvase HK440_RS02570 PF08238 Sel1 repeat HK440_RS02585 PF00849 RNA pseudouridylate synthase HK440_RS02590 PF01368 DHH family HK440_RS02590 PF02272 DHHA1 domain HK440_RS02590 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HK440_RS02590 PF17768 RecJ OB domain HK440_RS02595 PF00117 Glutamine amidotransferase class-I HK440_RS02595 PF06418 CTP synthase N-terminus HK440_RS02605 PF01514 Secretory protein of YscJ/FliF family HK440_RS02605 PF08345 Flagellar M-ring protein C-terminal HK440_RS02610 PF14841 FliG middle domain HK440_RS02610 PF01706 FliG C-terminal domain HK440_RS02610 PF14842 FliG N-terminal domain HK440_RS02620 PF02779 Transketolase, pyrimidine binding domain HK440_RS02620 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HK440_RS02620 PF02780 Transketolase, C-terminal domain HK440_RS02625 PF00009 Elongation factor Tu GTP binding domain HK440_RS02625 PF00679 Elongation factor G C-terminus HK440_RS02625 PF03144 Elongation factor Tu domain 2 HK440_RS02625 PF06421 GTP-binding protein LepA C-terminus HK440_RS02645 PF00005 ABC transporter HK440_RS02645 PF08402 TOBE domain HK440_RS02655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HK440_RS02655 PF00460 Flagella basal body rod protein HK440_RS02660 PF00083 Sugar (and other) transporter HK440_RS02665 PF01385 Probable transposase HK440_RS02665 PF12323 Helix-turn-helix domain HK440_RS02665 PF07282 Putative transposase DNA-binding domain HK440_RS02675 PF01580 FtsK/SpoIIIE family HK440_RS02675 PF09397 Ftsk gamma domain HK440_RS02675 PF17854 FtsK alpha domain HK440_RS02685 PF02779 Transketolase, pyrimidine binding domain HK440_RS02685 PF02780 Transketolase, C-terminal domain HK440_RS02685 PF00456 Transketolase, thiamine diphosphate binding domain HK440_RS02690 PF06574 FAD synthetase HK440_RS02695 PF01479 S4 domain HK440_RS02695 PF00163 Ribosomal protein S4/S9 N-terminal domain HK440_RS02705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HK440_RS02705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HK440_RS02715 PF00005 ABC transporter HK440_RS02715 PF00664 ABC transporter transmembrane region HK440_RS02730 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system HK440_RS02740 PF03824 High-affinity nickel-transport protein HK440_RS02760 PF00403 Heavy-metal-associated domain HK440_RS02765 PF00403 Heavy-metal-associated domain HK440_RS02770 PF01066 CDP-alcohol phosphatidyltransferase HK440_RS02780 PF00004 ATPase family associated with various cellular activities (AAA) HK440_RS02780 PF17862 AAA+ lid domain HK440_RS02780 PF01434 Peptidase family M41 HK440_RS02790 PF00072 Response regulator receiver domain HK440_RS02815 PF02527 rRNA small subunit methyltransferase G HK440_RS02820 PF02547 Queuosine biosynthesis protein HK440_RS02825 PF00902 Sec-independent protein translocase protein (TatC) HK440_RS02835 PF05496 Holliday junction DNA helicase RuvB P-loop domain HK440_RS02835 PF05491 RuvB C-terminal winged helix domain HK440_RS02835 PF17864 RuvB AAA lid domain HK440_RS02840 PF02548 Ketopantoate hydroxymethyltransferase HK440_RS02865 PF03775 Septum formation inhibitor MinC, C-terminal domain HK440_RS02870 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HK440_RS02880 PF00288 GHMP kinases N terminal domain HK440_RS02890 PF11987 Translation-initiation factor 2 HK440_RS02890 PF04760 Translation initiation factor IF-2, N-terminal region HK440_RS02890 PF00009 Elongation factor Tu GTP binding domain HK440_RS02895 PF02033 Ribosome-binding factor A HK440_RS02900 PF17384 RimP C-terminal SH3 domain HK440_RS02900 PF02576 RimP N-terminal domain HK440_RS02905 PF13193 AMP-binding enzyme C-terminal domain HK440_RS02905 PF16177 Acetyl-coenzyme A synthetase N-terminus HK440_RS02905 PF00501 AMP-binding enzyme HK440_RS02910 PF00149 Calcineurin-like phosphoesterase HK440_RS02915 PF00072 Response regulator receiver domain HK440_RS02915 PF00486 Transcriptional regulatory protein, C terminal HK440_RS02925 PF00771 FHIPEP family HK440_RS02930 PF00312 Ribosomal protein S15 HK440_RS02940 PF01220 Dehydroquinase class II HK440_RS02945 PF01321 Creatinase/Prolidase N-terminal domain HK440_RS02945 PF00557 Metallopeptidase family M24 HK440_RS02950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HK440_RS02955 PF00448 SRP54-type protein, GTPase domain HK440_RS02960 PF10609 NUBPL iron-transfer P-loop NTPase HK440_RS02970 PF04542 Sigma-70 region 2 HK440_RS02970 PF04545 Sigma-70, region 4 HK440_RS02970 PF04539 Sigma-70 region 3 HK440_RS02975 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HK440_RS02975 PF02154 Flagellar motor switch protein FliM HK440_RS02980 PF04509 CheC-like family HK440_RS02980 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HK440_RS02995 PF01475 Ferric uptake regulator family HK440_RS03000 PF16193 AAA C-terminal domain HK440_RS03000 PF05496 Holliday junction DNA helicase RuvB P-loop domain HK440_RS03000 PF12002 MgsA AAA+ ATPase C terminal HK440_RS03000 PF01661 Macro domain HK440_RS03005 PF13411 MerR HTH family regulatory protein HK440_RS03010 PF00226 DnaJ domain HK440_RS03010 PF01556 DnaJ C terminal domain HK440_RS03020 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HK440_RS03020 PF01367 5'-3' exonuclease, C-terminal SAM fold HK440_RS03020 PF00476 DNA polymerase family A HK440_RS03020 PF01612 3'-5' exonuclease HK440_RS03025 PF00072 Response regulator receiver domain HK440_RS03025 PF00486 Transcriptional regulatory protein, C terminal HK440_RS03030 PF02542 YgbB family HK440_RS03030 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HK440_RS03035 PF13180 PDZ domain HK440_RS03035 PF17820 PDZ domain HK440_RS03040 PF00324 Amino acid permease HK440_RS03045 PF01066 CDP-alcohol phosphatidyltransferase HK440_RS03060 PF00701 Dihydrodipicolinate synthetase family HK440_RS03070 PF01180 Dihydroorotate dehydrogenase HK440_RS03075 PF13089 Polyphosphate kinase N-terminal domain HK440_RS03075 PF02503 Polyphosphate kinase middle domain HK440_RS03075 PF13090 Polyphosphate kinase C-terminal domain 2 HK440_RS03075 PF17941 Polyphosphate kinase C-terminal domain 1 HK440_RS03090 PF02384 N-6 DNA Methylase HK440_RS03090 PF12161 HsdM N-terminal domain HK440_RS03130 PF02254 TrkA-N domain HK440_RS03130 PF00999 Sodium/hydrogen exchanger family HK440_RS03145 PF00528 Binding-protein-dependent transport system inner membrane component HK440_RS03150 PF08402 TOBE domain HK440_RS03150 PF00005 ABC transporter HK440_RS03155 PF00749 tRNA synthetases class I (E and Q), catalytic domain HK440_RS03165 PF02384 N-6 DNA Methylase HK440_RS03220 PF02075 Crossover junction endodeoxyribonuclease RuvC HK440_RS03225 PF00593 TonB dependent receptor HK440_RS03225 PF07715 TonB-dependent Receptor Plug Domain HK440_RS03245 PF03831 PhnA domain HK440_RS03245 PF08274 PhnA Zinc-Ribbon HK440_RS03255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HK440_RS03255 PF00460 Flagella basal body rod protein HK440_RS03255 PF07196 Flagellin hook IN motif HK440_RS03255 PF07559 Flagellar basal body protein FlaE HK440_RS03260 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HK440_RS03270 PF02684 Lipid-A-disaccharide synthetase HK440_RS03275 PF01272 Transcription elongation factor, GreA/GreB, C-term HK440_RS03275 PF03449 Transcription elongation factor, N-terminal HK440_RS03280 PF00692 dUTPase HK440_RS03290 PF15437 Plasminogen-binding protein pgbA C-terminal HK440_RS03295 PF03309 Type III pantothenate kinase HK440_RS03310 PF01370 NAD dependent epimerase/dehydratase family HK440_RS03315 PF01467 Cytidylyltransferase-like HK440_RS03315 PF00294 pfkB family carbohydrate kinase HK440_RS03320 PF13580 SIS domain HK440_RS03330 PF03062 MBOAT, membrane-bound O-acyltransferase family HK440_RS03335 PF00478 IMP dehydrogenase / GMP reductase domain HK440_RS03340 PF00005 ABC transporter HK440_RS03340 PF12848 ABC transporter HK440_RS03350 PF01569 PAP2 superfamily HK440_RS03355 PF09556 HaeIII restriction endonuclease HK440_RS03360 PF00145 C-5 cytosine-specific DNA methylase HK440_RS03375 PF01385 Probable transposase HK440_RS03375 PF12323 Helix-turn-helix domain HK440_RS03375 PF07282 Putative transposase DNA-binding domain HK440_RS03385 PF01420 Type I restriction modification DNA specificity domain HK440_RS03390 PF18766 SWI2/SNF2 ATPase HK440_RS03390 PF12008 Type I restriction and modification enzyme - subunit R C terminal HK440_RS03390 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HK440_RS03395 PF02110 Hydroxyethylthiazole kinase family HK440_RS03400 PF08543 Phosphomethylpyrimidine kinase HK440_RS03405 PF02581 Thiamine monophosphate synthase HK440_RS03415 PF04127 DNA / pantothenate metabolism flavoprotein HK440_RS03415 PF02441 Flavoprotein HK440_RS03420 PF02719 Polysaccharide biosynthesis protein HK440_RS03445 PF00216 Bacterial DNA-binding protein HK440_RS03450 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HK440_RS03450 PF01926 50S ribosome-binding GTPase HK440_RS03460 PF17284 Spermidine synthase tetramerisation domain HK440_RS03465 PF01121 Dephospho-CoA kinase HK440_RS03470 PF01425 Amidase HK440_RS03475 PF00478 IMP dehydrogenase / GMP reductase domain HK440_RS03475 PF00571 CBS domain HK440_RS03480 PF00119 ATP synthase A chain HK440_RS03485 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HK440_RS03495 PF07992 Pyridine nucleotide-disulphide oxidoreductase HK440_RS03500 PF00085 Thioredoxin HK440_RS03505 PF02021 Uncharacterised protein family UPF0102 HK440_RS03510 PF03447 Homoserine dehydrogenase, NAD binding domain HK440_RS03510 PF00742 Homoserine dehydrogenase HK440_RS03510 PF01842 ACT domain HK440_RS03515 PF01541 GIY-YIG catalytic domain HK440_RS03515 PF02151 UvrB/uvrC motif HK440_RS03515 PF08459 UvrC Helix-hairpin-helix N-terminal HK440_RS03530 PF00005 ABC transporter HK440_RS03530 PF00571 CBS domain HK440_RS03535 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HK440_RS03545 PF13677 Membrane MotB of proton-channel complex MotA/MotB HK440_RS03545 PF00691 OmpA family HK440_RS03550 PF01618 MotA/TolQ/ExbB proton channel family HK440_RS03555 PF00899 ThiF family HK440_RS03560 PF00753 Metallo-beta-lactamase superfamily HK440_RS03580 PF03748 Flagellar basal body-associated protein FliL HK440_RS03585 PF01648 4'-phosphopantetheinyl transferase superfamily HK440_RS03605 PF00925 GTP cyclohydrolase II HK440_RS03605 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HK440_RS03615 PF00925 GTP cyclohydrolase II HK440_RS03625 PF02391 MoaE protein HK440_RS03630 PF00994 Probable molybdopterin binding domain HK440_RS03635 PF01967 MoaC family HK440_RS03640 PF05211 Neuraminyllactose-binding hemagglutinin precursor (NLBH) HK440_RS03650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HK440_RS03650 PF05697 Bacterial trigger factor protein (TF) HK440_RS03650 PF05698 Bacterial trigger factor protein (TF) C-terminus HK440_RS03655 PF00574 Clp protease HK440_RS03660 PF01327 Polypeptide deformylase HK440_RS03665 PF01078 Magnesium chelatase, subunit ChlI HK440_RS03665 PF13335 Magnesium chelatase, subunit ChlI C-terminal HK440_RS03670 PF00403 Heavy-metal-associated domain HK440_RS03675 PF01420 Type I restriction modification DNA specificity domain HK440_RS03690 PF02810 SEC-C motif HK440_RS03690 PF07516 SecA Wing and Scaffold domain HK440_RS03690 PF01043 SecA preprotein cross-linking domain HK440_RS03690 PF07517 SecA DEAD-like domain HK440_RS03695 PF03548 Outer membrane lipoprotein carrier protein LolA HK440_RS03725 PF06434 Aconitate hydratase 2 N-terminus HK440_RS03725 PF11791 Aconitate B N-terminal domain HK440_RS03725 PF00330 Aconitase family (aconitate hydratase) HK440_RS03735 PF00696 Amino acid kinase family HK440_RS03740 PF01192 RNA polymerase Rpb6 HK440_RS03745 PF04607 Region found in RelA / SpoT proteins HK440_RS03745 PF13291 ACT domain HK440_RS03745 PF02824 TGS domain HK440_RS03750 PF00579 tRNA synthetases class I (W and Y) HK440_RS03750 PF01479 S4 domain HK440_RS03760 PF01520 N-acetylmuramoyl-L-alanine amidase HK440_RS03770 PF01312 FlhB HrpN YscU SpaS Family HK440_RS03775 PF12804 MobA-like NTP transferase domain HK440_RS03780 PF06463 Molybdenum Cofactor Synthesis C HK440_RS03780 PF04055 Radical SAM superfamily HK440_RS03805 PF00448 SRP54-type protein, GTPase domain HK440_RS03820 PF00013 KH domain HK440_RS03820 PF12072 Domain of unknown function (DUF3552) HK440_RS03820 PF01966 HD domain HK440_RS03825 PF01554 MatE HK440_RS03830 PF03553 Na+/H+ antiporter family HK440_RS03830 PF13726 Na+-H+ antiporter family HK440_RS03835 PF00795 Carbon-nitrogen hydrolase HK440_RS03845 PF00581 Rhodanese-like domain HK440_RS03845 PF00899 ThiF family HK440_RS03855 PF02561 Flagellar protein FliS HK440_RS03860 PF02465 Flagellar hook-associated protein 2 N-terminus HK440_RS03860 PF07195 Flagellar hook-associated protein 2 C-terminus HK440_RS03880 PF00005 ABC transporter HK440_RS03885 PF02390 Putative methyltransferase HK440_RS03895 PF01479 S4 domain HK440_RS03895 PF00849 RNA pseudouridylate synthase HK440_RS03900 PF03193 RsgA GTPase HK440_RS03910 PF01098 Cell cycle protein HK440_RS03920 PF14572 Phosphoribosyl synthetase-associated domain HK440_RS03920 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HK440_RS03925 PF01230 HIT domain HK440_RS03930 PF02875 Mur ligase family, glutamate ligase domain HK440_RS03930 PF08245 Mur ligase middle domain HK440_RS03930 PF01225 Mur ligase family, catalytic domain HK440_RS03940 PF01820 D-ala D-ala ligase N-terminus HK440_RS03940 PF07478 D-ala D-ala ligase C-terminus HK440_RS03945 PF04608 Phosphatidylglycerophosphatase A HK440_RS03950 PF00266 Aminotransferase class-V HK440_RS03955 PF00156 Phosphoribosyl transferase domain HK440_RS03960 PF04055 Radical SAM superfamily HK440_RS03960 PF00919 Uncharacterized protein family UPF0004 HK440_RS03995 PF01171 PP-loop family HK440_RS04000 PF01207 Dihydrouridine synthase (Dus) HK440_RS04015 PF03605 Anaerobic c4-dicarboxylate membrane transporter HK440_RS04020 PF17763 Glutaminase/Asparaginase C-terminal domain HK440_RS04020 PF00710 Asparaginase, N-terminal HK440_RS04040 PF01810 LysE type translocator HK440_RS04045 PF12169 DNA polymerase III subunits gamma and tau domain III HK440_RS04045 PF12170 DNA polymerase III tau subunit V interacting with alpha HK440_RS04055 PF00005 ABC transporter HK440_RS04055 PF12399 Branched-chain amino acid ATP-binding cassette transporter HK440_RS04060 PF04552 Sigma-54, DNA binding domain HK440_RS04060 PF00309 Sigma-54 factor, Activator interacting domain (AID) HK440_RS04060 PF04963 Sigma-54 factor, core binding domain HK440_RS04085 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HK440_RS04095 PF01795 MraW methylase family HK440_RS04105 PF17755 UvrA DNA-binding domain HK440_RS04105 PF17760 UvrA interaction domain HK440_RS04115 PF00158 Sigma-54 interaction domain HK440_RS04115 PF00072 Response regulator receiver domain HK440_RS04125 PF00521 DNA gyrase/topoisomerase IV, subunit A HK440_RS04125 PF03989 DNA gyrase C-terminal domain, beta-propeller HK440_RS04130 PF01219 Prokaryotic diacylglycerol kinase HK440_RS04145 PF08882 Acetone carboxylase gamma subunit HK440_RS04150 PF02538 Hydantoinase B/oxoprolinase HK440_RS04155 PF05378 Hydantoinase/oxoprolinase N-terminal region HK440_RS04155 PF01968 Hydantoinase/oxoprolinase HK440_RS04165 PF02667 Short chain fatty acid transporter HK440_RS04170 PF01144 Coenzyme A transferase HK440_RS04175 PF01144 Coenzyme A transferase HK440_RS04180 PF00108 Thiolase, N-terminal domain HK440_RS04180 PF02803 Thiolase, C-terminal domain HK440_RS04190 PF07664 Ferrous iron transport protein B C terminus HK440_RS04190 PF02421 Ferrous iron transport protein B HK440_RS04190 PF07670 Nucleoside recognition HK440_RS04200 PF00813 FliP family HK440_RS04205 PF14602 Hexapeptide repeat of succinyl-transferase HK440_RS04205 PF12804 MobA-like NTP transferase domain HK440_RS04220 PF02867 Ribonucleotide reductase, barrel domain HK440_RS04220 PF03477 ATP cone domain HK440_RS04220 PF00317 Ribonucleotide reductase, all-alpha domain HK440_RS04225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HK440_RS04225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HK440_RS04230 PF01925 Sulfite exporter TauE/SafE HK440_RS04235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HK440_RS04235 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HK440_RS04240 PF18644 Phage integrase SAM-like domain HK440_RS04240 PF00589 Phage integrase family HK440_RS04250 PF00155 Aminotransferase class I and II HK440_RS04270 PF02754 Cysteine-rich domain HK440_RS04275 PF06969 HemN C-terminal domain HK440_RS04275 PF04055 Radical SAM superfamily HK440_RS04280 PF10788 Protein of unknown function (DUF2603) HK440_RS04285 PF01264 Chorismate synthase HK440_RS04290 PF00035 Double-stranded RNA binding motif HK440_RS04290 PF14622 Ribonuclease-III-like HK440_RS04295 PF00075 RNase H HK440_RS04310 PF02637 GatB domain HK440_RS04310 PF02934 GatB/GatE catalytic domain HK440_RS04320 PF04055 Radical SAM superfamily HK440_RS04325 PF01103 Surface antigen HK440_RS04325 PF07244 Surface antigen variable number repeat HK440_RS04330 PF04055 Radical SAM superfamily HK440_RS04335 PF00210 Ferritin-like domain HK440_RS04355 PF10415 Fumarase C C-terminus HK440_RS04355 PF00206 Lyase HK440_RS04360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HK440_RS04370 PF00483 Nucleotidyl transferase HK440_RS04375 PF01464 Transglycosylase SLT domain HK440_RS04375 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HK440_RS04385 PF00749 tRNA synthetases class I (E and Q), catalytic domain HK440_RS04405 PF06508 Queuosine biosynthesis protein QueC HK440_RS04430 PF01750 Hydrogenase maturation protease HK440_RS04435 PF01292 Prokaryotic cytochrome b561 HK440_RS04440 PF00374 Nickel-dependent hydrogenase HK440_RS04445 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HK440_RS04445 PF10518 TAT (twin-arginine translocation) pathway signal sequence HK440_RS04445 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HK440_RS04450 PF02525 Flavodoxin-like fold HK440_RS04465 PF14602 Hexapeptide repeat of succinyl-transferase HK440_RS04465 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HK440_RS04470 PF04551 GcpE protein HK440_RS04475 PF00155 Aminotransferase class I and II HK440_RS04480 PF02875 Mur ligase family, glutamate ligase domain HK440_RS04480 PF01225 Mur ligase family, catalytic domain HK440_RS04480 PF08245 Mur ligase middle domain HK440_RS04490 PF01713 Smr domain HK440_RS04490 PF00488 MutS domain V HK440_RS04495 PF00719 Inorganic pyrophosphatase HK440_RS04515 PF01336 OB-fold nucleic acid binding domain HK440_RS04515 PF00152 tRNA synthetases class II (D, K and N) HK440_RS04515 PF02938 GAD domain HK440_RS04520 PF01584 CheW-like domain HK440_RS04520 PF00072 Response regulator receiver domain HK440_RS04525 PF03120 NAD-dependent DNA ligase OB-fold domain HK440_RS04525 PF01653 NAD-dependent DNA ligase adenylation domain HK440_RS04525 PF00533 BRCA1 C Terminus (BRCT) domain HK440_RS04535 PF00005 ABC transporter HK440_RS04545 PF08502 LeuA allosteric (dimerisation) domain HK440_RS04545 PF00682 HMGL-like HK440_RS04555 PF00873 AcrB/AcrD/AcrF family HK440_RS04570 PF01208 Uroporphyrinogen decarboxylase (URO-D) HK440_RS04585 PF00700 Bacterial flagellin C-terminal helical region HK440_RS04585 PF07196 Flagellin hook IN motif HK440_RS04585 PF00669 Bacterial flagellin N-terminal helical region HK440_RS04590 PF00005 ABC transporter HK440_RS04595 PF00672 HAMP domain HK440_RS04595 PF12729 Four helix bundle sensory module for signal transduction HK440_RS04595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HK440_RS04600 PF00155 Aminotransferase class I and II HK440_RS04605 PF00905 Penicillin binding protein transpeptidase domain HK440_RS04605 PF00912 Transglycosylase HK440_RS04630 PF01555 DNA methylase HK440_RS04630 PF18273 Type III R-M EcoP15I C-terminal domain HK440_RS04635 PF04851 Type III restriction enzyme, res subunit HK440_RS04635 PF08774 VRR-NUC domain HK440_RS04645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HK440_RS04650 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HK440_RS04650 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HK440_RS04650 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HK440_RS04670 PF04023 FeoA domain HK440_RS04675 PF00730 HhH-GPD superfamily base excision DNA repair protein HK440_RS04675 PF00633 Helix-hairpin-helix motif HK440_RS04680 PF04509 CheC-like family HK440_RS04680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HK440_RS04715 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HK440_RS04715 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HK440_RS04720 PF10502 Signal peptidase, peptidase S26 HK440_RS04725 PF02163 Peptidase family M50 HK440_RS04730 PF02502 Ribose/Galactose Isomerase HK440_RS04740 PF00156 Phosphoribosyl transferase domain HK440_RS04750 PF00883 Cytosol aminopeptidase family, catalytic domain HK440_RS04755 PF06071 Protein of unknown function (DUF933) HK440_RS04755 PF01926 50S ribosome-binding GTPase HK440_RS04765 PF01594 AI-2E family transporter HK440_RS04770 PF01678 Diaminopimelate epimerase HK440_RS04775 PF04224 Protein of unknown function, DUF417 HK440_RS04790 PF01165 Ribosomal protein S21 HK440_RS04800 PF00550 Phosphopantetheine attachment site HK440_RS04805 PF02801 Beta-ketoacyl synthase, C-terminal domain HK440_RS04805 PF00109 Beta-ketoacyl synthase, N-terminal domain HK440_RS04810 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HK440_RS04830 PF00588 SpoU rRNA Methylase family HK440_RS04830 PF08032 RNA 2'-O ribose methyltransferase substrate binding HK440_RS04835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HK440_RS04840 PF01197 Ribosomal protein L31 HK440_RS04845 PF07498 Rho termination factor, N-terminal domain HK440_RS04845 PF07497 Rho termination factor, RNA-binding domain HK440_RS04845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HK440_RS04850 PF01177 Asp/Glu/Hydantoin racemase HK440_RS04860 PF00120 Glutamine synthetase, catalytic domain HK440_RS04860 PF03951 Glutamine synthetase, beta-Grasp domain HK440_RS04870 PF03948 Ribosomal protein L9, C-terminal domain HK440_RS04870 PF01281 Ribosomal protein L9, N-terminal domain HK440_RS04875 PF00227 Proteasome subunit HK440_RS04880 PF10431 C-terminal, D2-small domain, of ClpB protein HK440_RS04880 PF07724 AAA domain (Cdc48 subfamily) HK440_RS04885 PF07650 KH domain HK440_RS04885 PF01926 50S ribosome-binding GTPase HK440_RS04930 PF05173 Dihydrodipicolinate reductase, C-terminus HK440_RS04930 PF01113 Dihydrodipicolinate reductase, N-terminus HK440_RS04935 PF01565 FAD binding domain HK440_RS04935 PF02913 FAD linked oxidases, C-terminal domain HK440_RS04940 PF15436 Plasminogen-binding protein pgbA N-terminal HK440_RS04940 PF15437 Plasminogen-binding protein pgbA C-terminal HK440_RS04950 PF01551 Peptidase family M23 HK440_RS04950 PF10145 Phage-related minor tail protein HK440_RS04950 PF01464 Transglycosylase SLT domain HK440_RS04960 PF01751 Toprim domain HK440_RS04960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HK440_RS04960 PF00986 DNA gyrase B subunit, carboxyl terminus HK440_RS04960 PF00204 DNA gyrase B HK440_RS04965 PF00712 DNA polymerase III beta subunit, N-terminal domain HK440_RS04965 PF02767 DNA polymerase III beta subunit, central domain HK440_RS04965 PF02768 DNA polymerase III beta subunit, C-terminal domain HK440_RS04970 PF02253 Phospholipase A1 HK440_RS04975 PF00209 Sodium:neurotransmitter symporter family HK440_RS04980 PF00209 Sodium:neurotransmitter symporter family HK440_RS04985 PF03061 Thioesterase superfamily HK440_RS04990 PF04359 Protein of unknown function (DUF493) HK440_RS04995 PF08245 Mur ligase middle domain HK440_RS04995 PF02875 Mur ligase family, glutamate ligase domain HK440_RS05000 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HK440_RS05000 PF00953 Glycosyl transferase family 4 HK440_RS05010 PF00830 Ribosomal L28 family HK440_RS05045 PF07499 RuvA, C-terminal domain HK440_RS05045 PF01330 RuvA N terminal domain HK440_RS05055 PF03023 Lipid II flippase MurJ HK440_RS05060 PF01406 tRNA synthetases class I (C) catalytic domain HK440_RS05060 PF09190 DALR domain HK440_RS05065 PF02691 Vacuolating cyotoxin HK440_RS05065 PF03797 Autotransporter beta-domain HK440_RS05070 PF00005 ABC transporter HK440_RS05075 PF01032 FecCD transport family HK440_RS05080 PF00106 short chain dehydrogenase HK440_RS05085 PF03061 Thioesterase superfamily HK440_RS05120 PF01924 Hydrogenase formation hypA family HK440_RS05125 PF01455 HupF/HypC family HK440_RS05130 PF02492 CobW/HypB/UreG, nucleotide-binding domain HK440_RS05145 PF01515 Phosphate acetyl/butaryl transferase HK440_RS05150 PF01515 Phosphate acetyl/butaryl transferase HK440_RS05160 PF13861 FlgD Tudor-like domain HK440_RS05160 PF03963 Flagellar hook capping protein - N-terminal region HK440_RS05160 PF13860 FlgD Ig-like domain HK440_RS05165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HK440_RS05165 PF07559 Flagellar basal body protein FlaE HK440_RS05165 PF00460 Flagella basal body rod protein HK440_RS05165 PF00460 Flagella basal body rod protein HK440_RS05165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HK440_RS05165 PF07559 Flagellar basal body protein FlaE HK440_RS05175 PF07669 Eco57I restriction-modification methylase HK440_RS05175 PF02384 N-6 DNA Methylase HK440_RS05180 PF13361 UvrD-like helicase C-terminal domain HK440_RS05180 PF00580 UvrD/REP helicase N-terminal domain HK440_RS05215 PF02142 MGS-like domain HK440_RS05215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HK440_RS05215 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HK440_RS05220 PF01027 Inhibitor of apoptosis-promoting Bax1 HK440_RS05225 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HK440_RS05225 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HK440_RS05230 PF02691 Vacuolating cyotoxin HK440_RS05230 PF03797 Autotransporter beta-domain HK440_RS05240 PF01361 Tautomerase enzyme HK440_RS05245 PF02132 RecR protein HK440_RS05250 PF01142 tRNA pseudouridine synthase D (TruD) HK440_RS05255 PF01435 Peptidase family M48 HK440_RS05260 PF01227 GTP cyclohydrolase I HK440_RS05265 PF00348 Polyprenyl synthetase HK440_RS05270 PF01975 Survival protein SurE HK440_RS05280 PF01242 6-pyruvoyl tetrahydropterin synthase HK440_RS05300 PF07690 Major Facilitator Superfamily HK440_RS05315 PF00528 Binding-protein-dependent transport system inner membrane component HK440_RS05320 PF00497 Bacterial extracellular solute-binding proteins, family 3 HK440_RS05325 PF01168 Alanine racemase, N-terminal domain HK440_RS05325 PF00842 Alanine racemase, C-terminal domain HK440_RS05330 PF01235 Sodium:alanine symporter family HK440_RS05335 PF01266 FAD dependent oxidoreductase HK440_RS05340 PF01042 Endoribonuclease L-PSP HK440_RS05365 PF03553 Na+/H+ antiporter family HK440_RS05380 PF02590 Predicted SPOUT methyltransferase HK440_RS05385 PF17848 Acetyl-coA carboxylase zinc finger domain HK440_RS05385 PF01039 Carboxyl transferase domain HK440_RS05395 PF00994 Probable molybdopterin binding domain HK440_RS05395 PF18146 Damage-inducible protein CinA KH domain HK440_RS05395 PF02464 Competence-damaged protein HK440_RS05405 PF00881 Nitroreductase family HK440_RS05410 PF01790 Prolipoprotein diacylglyceryl transferase HK440_RS05415 PF00849 RNA pseudouridylate synthase HK440_RS05420 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HK440_RS05420 PF02390 Putative methyltransferase HK440_RS05430 PF01784 NIF3 (NGG1p interacting factor 3) HK440_RS05435 PF02091 Glycyl-tRNA synthetase alpha subunit HK440_RS05440 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HK440_RS05440 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HK440_RS05450 PF01926 50S ribosome-binding GTPase HK440_RS05450 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HK440_RS05465 PF00873 AcrB/AcrD/AcrF family HK440_RS05480 PF02092 Glycyl-tRNA synthetase beta subunit HK440_RS05490 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HK440_RS05490 PF01676 Metalloenzyme superfamily HK440_RS05495 PF02686 Glu-tRNAGln amidotransferase C subunit HK440_RS05500 PF00202 Aminotransferase class-III HK440_RS05510 PF02491 SHS2 domain inserted in FTSA HK440_RS05515 PF00091 Tubulin/FtsZ family, GTPase domain HK440_RS05515 PF12327 FtsZ family, C-terminal domain HK440_RS05530 PF00924 Mechanosensitive ion channel HK440_RS05610 PF12323 Helix-turn-helix domain HK440_RS05610 PF07282 Putative transposase DNA-binding domain HK440_RS05610 PF01385 Probable transposase HK440_RS05630 PF03135 CagE, TrbE, VirB family, component of type IV transporter system HK440_RS05635 PF01131 DNA topoisomerase HK440_RS05635 PF01751 Toprim domain HK440_RS05675 PF00437 Type II/IV secretion system protein HK440_RS05695 PF02534 Type IV secretory system Conjugative DNA transfer HK440_RS05700 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ HK440_RS05725 PF13614 AAA domain HK440_RS05760 PF18644 Phage integrase SAM-like domain HK440_RS05760 PF00589 Phage integrase family HK440_RS05775 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system HK440_RS05785 PF17944 Arginine decarboxylase C-terminal helical extension HK440_RS05785 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HK440_RS05785 PF17810 Arginine decarboxylase helical bundle domain HK440_RS05800 PF08003 Protein of unknown function (DUF1698) HK440_RS05810 PF01588 Putative tRNA binding domain HK440_RS05810 PF09334 tRNA synthetases class I (M) HK440_RS05810 PF00133 tRNA synthetases class I (I, L, M and V) HK440_RS05820 PF00924 Mechanosensitive ion channel HK440_RS05850 PF02540 NAD synthase HK440_RS05850 PF00958 GMP synthase C terminal domain HK440_RS05850 PF00117 Glutamine amidotransferase class-I HK440_RS05860 PF01568 Molydopterin dinucleotide binding domain HK440_RS05860 PF18364 Molybdopterin oxidoreductase N-terminal domain HK440_RS05860 PF00384 Molybdopterin oxidoreductase HK440_RS05870 PF02347 Glycine cleavage system P-protein HK440_RS05875 PF01230 HIT domain HK440_RS05880 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HK440_RS05880 PF01409 tRNA synthetases class II core domain (F) HK440_RS05885 PF03484 tRNA synthetase B5 domain HK440_RS05885 PF03147 Ferredoxin-fold anticodon binding domain HK440_RS05885 PF01588 Putative tRNA binding domain HK440_RS05885 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HK440_RS05890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HK440_RS05895 PF02401 LytB protein HK440_RS05900 PF00575 S1 RNA binding domain HK440_RS05910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HK440_RS05910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HK440_RS05910 PF01842 ACT domain HK440_RS05915 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HK440_RS05920 PF01168 Alanine racemase, N-terminal domain HK440_RS05930 PF01584 CheW-like domain HK440_RS05930 PF00072 Response regulator receiver domain HK440_RS05935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HK440_RS05935 PF02895 Signal transducing histidine kinase, homodimeric domain HK440_RS05935 PF00072 Response regulator receiver domain HK440_RS05935 PF01627 Hpt domain HK440_RS05935 PF01584 CheW-like domain HK440_RS05940 PF01584 CheW-like domain HK440_RS05945 PF08534 Redoxin HK440_RS05950 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HK440_RS05950 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HK440_RS05955 PF13649 Methyltransferase domain HK440_RS05960 PF18074 Primosomal protein N C-terminal domain HK440_RS05960 PF17764 3′ DNA-binding domain (3′BD) HK440_RS05960 PF00271 Helicase conserved C-terminal domain HK440_RS05960 PF00270 DEAD/DEAH box helicase HK440_RS05960 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HK440_RS05985 PF01435 Peptidase family M48 HK440_RS05990 PF05175 Methyltransferase small domain HK440_RS05990 PF17827 PrmC N-terminal domain HK440_RS05995 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HK440_RS05995 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HK440_RS06005 PF01578 Cytochrome C assembly protein HK440_RS06005 PF05140 ResB-like family HK440_RS06015 PF00762 Ferrochelatase HK440_RS06025 PF04452 RNA methyltransferase HK440_RS06035 PF00692 dUTPase HK440_RS06040 PF00364 Biotin-requiring enzyme HK440_RS06045 PF02785 Biotin carboxylase C-terminal domain HK440_RS06045 PF00289 Biotin carboxylase, N-terminal domain HK440_RS06045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HK440_RS06075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HK440_RS06085 PF00268 Ribonucleotide reductase, small chain HK440_RS06100 PF01416 tRNA pseudouridine synthase HK440_RS06105 PF01370 NAD dependent epimerase/dehydratase family HK440_RS06130 PF01385 Probable transposase HK440_RS06130 PF07282 Putative transposase DNA-binding domain HK440_RS06130 PF12323 Helix-turn-helix domain HK440_RS06145 PF08238 Sel1 repeat HK440_RS06150 PF01081 KDPG and KHG aldolase HK440_RS06155 PF00920 Dehydratase family HK440_RS06160 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HK440_RS06160 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HK440_RS06165 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HK440_RS06170 PF02685 Glucokinase HK440_RS06175 PF00107 Zinc-binding dehydrogenase HK440_RS06175 PF08240 Alcohol dehydrogenase GroES-like domain HK440_RS06195 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HK440_RS06205 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HK440_RS06205 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HK440_RS06210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HK440_RS06215 PF00206 Lyase HK440_RS06215 PF10397 Adenylosuccinate lyase C-terminus HK440_RS06225 PF02151 UvrB/uvrC motif HK440_RS06225 PF04851 Type III restriction enzyme, res subunit HK440_RS06225 PF17757 UvrB interaction domain HK440_RS06225 PF12344 Ultra-violet resistance protein B HK440_RS06225 PF00271 Helicase conserved C-terminal domain HK440_RS06255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HK440_RS06255 PF07559 Flagellar basal body protein FlaE HK440_RS06255 PF00460 Flagella basal body rod protein HK440_RS06265 PF00145 C-5 cytosine-specific DNA methylase HK440_RS06280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HK440_RS06290 PF00691 OmpA family HK440_RS06295 PF07676 WD40-like Beta Propeller Repeat HK440_RS06305 PF02472 Biopolymer transport protein ExbD/TolR HK440_RS06310 PF01618 MotA/TolQ/ExbB proton channel family HK440_RS06315 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HK440_RS06320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HK440_RS06320 PF02874 ATP synthase alpha/beta family, beta-barrel domain HK440_RS06325 PF00231 ATP synthase HK440_RS06330 PF00306 ATP synthase alpha/beta chain, C terminal domain HK440_RS06330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HK440_RS06330 PF02874 ATP synthase alpha/beta family, beta-barrel domain HK440_RS06340 PF00430 ATP synthase B/B' CF(0) HK440_RS06350 PF17762 HTH domain found in ParB protein HK440_RS06350 PF02195 ParB-like nuclease domain HK440_RS06355 PF13614 AAA domain HK440_RS06360 PF03099 Biotin/lipoate A/B protein ligase family HK440_RS06360 PF03309 Type III pantothenate kinase HK440_RS06360 PF02237 Biotin protein ligase C terminal domain HK440_RS06365 PF02911 Formyl transferase, C-terminal domain HK440_RS06365 PF00551 Formyl transferase HK440_RS06400 PF01245 Ribosomal protein L19 HK440_RS06405 PF01746 tRNA (Guanine-1)-methyltransferase HK440_RS06410 PF05239 PRC-barrel domain HK440_RS06410 PF01782 RimM N-terminal domain HK440_RS06420 PF00886 Ribosomal protein S16 HK440_RS06425 PF02881 SRP54-type protein, helical bundle domain HK440_RS06425 PF00448 SRP54-type protein, GTPase domain HK440_RS06425 PF02978 Signal peptide binding domain HK440_RS06430 PF08264 Anticodon-binding domain of tRNA HK440_RS06430 PF00133 tRNA synthetases class I (I, L, M and V) HK440_RS06430 PF10458 Valyl tRNA synthetase tRNA binding arm HK440_RS06435 PF02623 FliW protein HK440_RS06440 PF04101 Glycosyltransferase family 28 C-terminal domain HK440_RS06440 PF03033 Glycosyltransferase family 28 N-terminal domain HK440_RS06455 PF03807 NADP oxidoreductase coenzyme F420-dependent HK440_RS06455 PF14748 Pyrroline-5-carboxylate reductase dimerisation HK440_RS06460 PF02661 Fic/DOC family HK440_RS06465 PF02130 Uncharacterized protein family UPF0054 HK440_RS06470 PF00258 Flavodoxin HK440_RS06485 PF07992 Pyridine nucleotide-disulphide oxidoreductase HK440_RS06495 PF00342 Phosphoglucose isomerase HK440_RS06505 PF13722 5TM C-terminal transporter carbon starvation CstA HK440_RS06505 PF02554 Carbon starvation protein CstA HK440_RS06510 PF00528 Binding-protein-dependent transport system inner membrane component HK440_RS06515 PF00528 Binding-protein-dependent transport system inner membrane component HK440_RS06520 PF00005 ABC transporter HK440_RS06535 PF07690 Major Facilitator Superfamily HK440_RS06540 PF00860 Permease family HK440_RS06560 PF01048 Phosphorylase superfamily HK440_RS06565 PF01676 Metalloenzyme superfamily HK440_RS06570 PF01773 Na+ dependent nucleoside transporter N-terminus HK440_RS06570 PF07662 Na+ dependent nucleoside transporter C-terminus HK440_RS06580 PF07690 Major Facilitator Superfamily HK440_RS06585 PF01171 PP-loop family HK440_RS06590 PF00999 Sodium/hydrogen exchanger family HK440_RS06590 PF02080 TrkA-C domain HK440_RS06590 PF02254 TrkA-N domain HK440_RS06600 PF07690 Major Facilitator Superfamily HK440_RS06605 PF00194 Eukaryotic-type carbonic anhydrase HK440_RS06615 PF02774 Semialdehyde dehydrogenase, dimerisation domain HK440_RS06615 PF01118 Semialdehyde dehydrogenase, NAD binding domain HK440_RS06620 PF03129 Anticodon binding domain HK440_RS06620 PF13393 Histidyl-tRNA synthetase HK440_RS06635 PF00248 Aldo/keto reductase family HK440_RS06640 PF03764 Elongation factor G, domain IV HK440_RS06640 PF00679 Elongation factor G C-terminus HK440_RS06640 PF14492 Elongation Factor G, domain II HK440_RS06640 PF03144 Elongation factor Tu domain 2 HK440_RS06640 PF00009 Elongation factor Tu GTP binding domain HK440_RS06645 PF00177 Ribosomal protein S7p/S5e HK440_RS06650 PF00164 Ribosomal protein S12/S23 HK440_RS06655 PF00562 RNA polymerase Rpb2, domain 6 HK440_RS06655 PF10385 RNA polymerase beta subunit external 1 domain HK440_RS06655 PF04997 RNA polymerase Rpb1, domain 1 HK440_RS06655 PF04998 RNA polymerase Rpb1, domain 5 HK440_RS06655 PF04983 RNA polymerase Rpb1, domain 3 HK440_RS06655 PF04563 RNA polymerase beta subunit HK440_RS06655 PF00623 RNA polymerase Rpb1, domain 2 HK440_RS06655 PF04560 RNA polymerase Rpb2, domain 7 HK440_RS06655 PF04561 RNA polymerase Rpb2, domain 2 HK440_RS06655 PF04565 RNA polymerase Rpb2, domain 3 HK440_RS06655 PF05000 RNA polymerase Rpb1, domain 4 HK440_RS06660 PF16320 Ribosomal protein L7/L12 dimerisation domain HK440_RS06660 PF00542 Ribosomal protein L7/L12 C-terminal domain HK440_RS06665 PF00466 Ribosomal protein L10 HK440_RS06670 PF00687 Ribosomal protein L1p/L10e family HK440_RS06675 PF03946 Ribosomal protein L11, N-terminal domain HK440_RS06675 PF00298 Ribosomal protein L11, RNA binding domain HK440_RS06680 PF02357 Transcription termination factor nusG HK440_RS06695 PF00471 Ribosomal protein L33 HK440_RS06700 PF00009 Elongation factor Tu GTP binding domain HK440_RS06700 PF03144 Elongation factor Tu domain 2 HK440_RS06700 PF03143 Elongation factor Tu C-terminal domain HK440_RS06725 PF00664 ABC transporter transmembrane region HK440_RS06725 PF00005 ABC transporter HK440_RS06740 PF01636 Phosphotransferase enzyme family HK440_RS06755 PF00132 Bacterial transferase hexapeptide (six repeats) HK440_RS06770 PF00137 ATP synthase subunit C HK440_RS06780 PF01138 3' exoribonuclease family, domain 1 HK440_RS06780 PF00013 KH domain HK440_RS06780 PF03725 3' exoribonuclease family, domain 2 HK440_RS06780 PF00575 S1 RNA binding domain HK440_RS06790 PF03968 OstA-like protein HK440_RS06790 PF04453 LPS transport system D HK440_RS06800 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HK440_RS06800 PF02844 Phosphoribosylglycinamide synthetase, N domain HK440_RS06800 PF02843 Phosphoribosylglycinamide synthetase, C domain HK440_RS06815 PF00005 ABC transporter HK440_RS06820 PF01255 Putative undecaprenyl diphosphate synthase HK440_RS06840 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HK440_RS06845 PF04055 Radical SAM superfamily HK440_RS06850 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HK440_RS06855 PF00293 NUDIX domain HK440_RS06860 PF00696 Amino acid kinase family HK440_RS06860 PF01842 ACT domain HK440_RS06860 PF13840 ACT domain HK440_RS06870 PF12169 DNA polymerase III subunits gamma and tau domain III HK440_RS06875 PF00809 Pterin binding enzyme HK440_RS06885 PF00892 EamA-like transporter family HK440_RS06900 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HK440_RS06900 PF00117 Glutamine amidotransferase class-I HK440_RS06905 PF00795 Carbon-nitrogen hydrolase HK440_RS06915 PF02545 Maf-like protein HK440_RS06920 PF01411 tRNA synthetases class II (A) HK440_RS06920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HK440_RS06920 PF02272 DHHA1 domain HK440_RS06935 PF01084 Ribosomal protein S18 HK440_RS06940 PF00436 Single-strand binding protein family HK440_RS06945 PF01250 Ribosomal protein S6 HK440_RS06950 PF06144 DNA polymerase III, delta subunit HK440_RS06955 PF00773 RNB domain HK440_RS06960 PF08501 Shikimate dehydrogenase substrate binding domain HK440_RS06970 PF00528 Binding-protein-dependent transport system inner membrane component HK440_RS06975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HK440_RS06980 PF00579 tRNA synthetases class I (W and Y) HK440_RS06990 PF03840 Preprotein translocase SecG subunit HK440_RS06995 PF01765 Ribosome recycling factor HK440_RS07000 PF00156 Phosphoribosyl transferase domain HK440_RS07010 PF02146 Sir2 family HK440_RS07015 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HK440_RS07020 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HK440_RS07025 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HK440_RS07030 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HK440_RS07045 PF12838 4Fe-4S dicluster domain HK440_RS07045 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HK440_RS07045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HK440_RS07045 PF00384 Molybdopterin oxidoreductase HK440_RS07045 PF01568 Molydopterin dinucleotide binding domain HK440_RS07050 PF00146 NADH dehydrogenase HK440_RS07055 PF12838 4Fe-4S dicluster domain HK440_RS07060 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HK440_RS07065 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HK440_RS07070 PF00361 Proton-conducting membrane transporter HK440_RS07070 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HK440_RS07075 PF00361 Proton-conducting membrane transporter HK440_RS07075 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus HK440_RS07080 PF00361 Proton-conducting membrane transporter HK440_RS07090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HK440_RS07090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HK440_RS07090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HK440_RS07090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HK440_RS07115 PF00290 Tryptophan synthase alpha chain HK440_RS07120 PF00291 Pyridoxal-phosphate dependent enzyme HK440_RS07125 PF00218 Indole-3-glycerol phosphate synthase HK440_RS07125 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HK440_RS07130 PF00591 Glycosyl transferase family, a/b domain HK440_RS07130 PF02885 Glycosyl transferase family, helical bundle domain HK440_RS07135 PF00117 Glutamine amidotransferase class-I HK440_RS07140 PF04715 Anthranilate synthase component I, N terminal region HK440_RS07140 PF00425 chorismate binding enzyme HK440_RS07155 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HK440_RS07165 PF04264 YceI-like domain HK440_RS07170 PF03070 TENA/THI-4/PQQC family HK440_RS07190 PF04973 Nicotinamide mononucleotide transporter HK440_RS07200 PF01196 Ribosomal protein L17 HK440_RS07205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HK440_RS07205 PF01000 RNA polymerase Rpb3/RpoA insert domain HK440_RS07205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HK440_RS07210 PF01479 S4 domain HK440_RS07210 PF00163 Ribosomal protein S4/S9 N-terminal domain HK440_RS07215 PF00411 Ribosomal protein S11 HK440_RS07220 PF00416 Ribosomal protein S13/S18 HK440_RS07225 PF00444 Ribosomal protein L36 HK440_RS07230 PF01176 Translation initiation factor 1A / IF-1 HK440_RS07235 PF00557 Metallopeptidase family M24 HK440_RS07240 PF00344 SecY translocase HK440_RS07245 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HK440_RS07250 PF03719 Ribosomal protein S5, C-terminal domain HK440_RS07250 PF00333 Ribosomal protein S5, N-terminal domain HK440_RS07255 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HK440_RS07260 PF00347 Ribosomal protein L6 HK440_RS07265 PF00410 Ribosomal protein S8 HK440_RS07270 PF00253 Ribosomal protein S14p/S29e HK440_RS07275 PF00673 ribosomal L5P family C-terminus HK440_RS07275 PF00281 Ribosomal protein L5 HK440_RS07280 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HK440_RS07280 PF00467 KOW motif HK440_RS07285 PF00238 Ribosomal protein L14p/L23e HK440_RS07290 PF00366 Ribosomal protein S17 HK440_RS07295 PF00831 Ribosomal L29 protein HK440_RS07300 PF00252 Ribosomal protein L16p/L10e HK440_RS07305 PF07650 KH domain HK440_RS07305 PF00189 Ribosomal protein S3, C-terminal domain HK440_RS07310 PF00237 Ribosomal protein L22p/L17e HK440_RS07315 PF00203 Ribosomal protein S19 HK440_RS07320 PF03947 Ribosomal Proteins L2, C-terminal domain HK440_RS07320 PF00181 Ribosomal Proteins L2, RNA binding domain HK440_RS07325 PF00276 Ribosomal protein L23 HK440_RS07330 PF00573 Ribosomal protein L4/L1 family HK440_RS07335 PF00297 Ribosomal protein L3 HK440_RS07340 PF00338 Ribosomal protein S10p/S20e HK440_RS07355 PF01351 Ribonuclease HII HK440_RS07365 PF00206 Lyase HK440_RS07365 PF10415 Fumarase C C-terminus HK440_RS07380 PF00529 HlyD membrane-fusion protein of T1SS HK440_RS07380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HK440_RS07385 PF00873 AcrB/AcrD/AcrF family HK440_RS07390 PF05437 Branched-chain amino acid transport protein (AzlD) HK440_RS07395 PF03591 AzlC protein HK440_RS07400 PF00684 DnaJ central domain HK440_RS07400 PF01556 DnaJ C terminal domain HK440_RS07400 PF00226 DnaJ domain HK440_RS07425 PF01467 Cytidylyltransferase-like HK440_RS07430 PF08753 NikR C terminal nickel binding domain HK440_RS07430 PF01402 Ribbon-helix-helix protein, copG family HK440_RS07435 PF01618 MotA/TolQ/ExbB proton channel family HK440_RS07440 PF02472 Biopolymer transport protein ExbD/TolR HK440_RS07445 PF03544 Gram-negative bacterial TonB protein C-terminal HK440_RS07455 PF03741 Integral membrane protein TerC family HK440_RS07460 PF01544 CorA-like Mg2+ transporter protein HK440_RS07465 PF00162 Phosphoglycerate kinase HK440_RS07470 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HK440_RS07470 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HK440_RS07475 PF03167 Uracil DNA glycosylase superfamily HK440_RS07480 PF01553 Acyltransferase HK440_RS07490 PF13180 PDZ domain HK440_RS07490 PF03572 Peptidase family S41 HK440_RS07505 PF01555 DNA methylase HK440_RS07505 PF18755 Restriction Enzyme Adenine Methylase Associated HK440_RS07515 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HK440_RS07515 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HK440_RS07520 PF02445 Quinolinate synthetase A protein HK440_RS07525 PF02666 Phosphatidylserine decarboxylase HK440_RS07540 PF01040 UbiA prenyltransferase family HK440_RS07550 PF03796 DnaB-like helicase C terminal domain HK440_RS07550 PF00772 DnaB-like helicase N terminal domain HK440_RS07555 PF03853 YjeF-related protein N-terminus HK440_RS07555 PF01256 Carbohydrate kinase HK440_RS07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HK440_RS07565 PF00072 Response regulator receiver domain HK440_RS07565 PF00486 Transcriptional regulatory protein, C terminal HK440_RS07570 PF01555 DNA methylase HK440_RS07590 PF07724 AAA domain (Cdc48 subfamily) HK440_RS07590 PF10431 C-terminal, D2-small domain, of ClpB protein HK440_RS07595 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HK440_RS07595 PF00132 Bacterial transferase hexapeptide (six repeats) HK440_RS07600 PF07977 FabA-like domain HK440_RS07605 PF02623 FliW protein HK440_RS07610 PF13525 Outer membrane lipoprotein HK440_RS07615 PF00004 ATPase family associated with various cellular activities (AAA) HK440_RS07615 PF05362 Lon protease (S16) C-terminal proteolytic domain HK440_RS07615 PF02190 ATP-dependent protease La (LON) substrate-binding domain HK440_RS07620 PF01842 ACT domain HK440_RS07620 PF02153 Prephenate dehydrogenase HK440_RS07630 PF01555 DNA methylase HK440_RS07635 PF04851 Type III restriction enzyme, res subunit HK440_RS07645 PF04055 Radical SAM superfamily HK440_RS07645 PF06968 Biotin and Thiamin Synthesis associated domain HK440_RS07650 PF03631 Virulence factor BrkB HK440_RS07685 PF14489 QueF-like protein HK440_RS07715 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HK440_RS07720 PF01313 Bacterial export proteins, family 3 HK440_RS07725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HK440_RS07725 PF18269 T3SS EscN ATPase C-terminal domain HK440_RS07730 PF00437 Type II/IV secretion system protein HK440_RS07735 PF00133 tRNA synthetases class I (I, L, M and V) HK440_RS07735 PF08264 Anticodon-binding domain of tRNA HK440_RS07740 PF01479 S4 domain HK440_RS07760 PF04055 Radical SAM superfamily HK440_RS07765 PF00571 CBS domain HK440_RS07765 PF01380 SIS domain HK440_RS07770 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HK440_RS07770 PF00753 Metallo-beta-lactamase superfamily HK440_RS07770 PF17770 Ribonuclease J C-terminal domain HK440_RS07775 PF00398 Ribosomal RNA adenine dimethylase HK440_RS07785 PF01420 Type I restriction modification DNA specificity domain HK440_RS07790 PF00551 Formyl transferase HK440_RS07790 PF01842 ACT domain HK440_RS07835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HK440_RS07840 PF02599 Global regulator protein family HK440_RS07845 PF00288 GHMP kinases N terminal domain HK440_RS07850 PF01668 SmpB protein HK440_RS07855 PF01618 MotA/TolQ/ExbB proton channel family HK440_RS07860 PF02472 Biopolymer transport protein ExbD/TolR HK440_RS07865 PF00468 Ribosomal protein L34 HK440_RS07870 PF00825 Ribonuclease P HK440_RS07875 PF01809 Putative membrane protein insertion efficiency factor HK440_RS07880 PF02096 60Kd inner membrane protein HK440_RS07880 PF14849 YidC periplasmic domain HK440_RS07890 PF01926 50S ribosome-binding GTPase HK440_RS07890 PF12631 MnmE helical domain HK440_RS07890 PF10396 GTP-binding protein TrmE N-terminus HK440_RS07920 PF02511 Thymidylate synthase complementing protein HK440_RS07925 PF01380 SIS domain HK440_RS07930 PF10398 Protein of unknown function (DUF2443) HK440_RS07945 PF02661 Fic/DOC family HK440_RS07945 PF12728 Helix-turn-helix domain HK440_RS07960 PF07282 Putative transposase DNA-binding domain HK440_RS07960 PF12323 Helix-turn-helix domain HK440_RS07960 PF01385 Probable transposase HK440_RS07970 PF03432 Relaxase/Mobilisation nuclease domain