locus-tag class description RC54_RS00005 PF11638 DnaA N-terminal domain RC54_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix RC54_RS00005 PF00308 Bacterial dnaA protein RC54_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RC54_RS00010 PF02767 DNA polymerase III beta subunit, central domain RC54_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RC54_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus RC54_RS00015 PF01751 Toprim domain RC54_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS00015 PF18053 DNA gyrase B subunit insert domain RC54_RS00015 PF00204 DNA gyrase B RC54_RS00120 PF02195 ParB-like nuclease domain RC54_RS00150 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS00150 PF00563 EAL domain RC54_RS00150 PF13188 PAS domain RC54_RS00150 PF03707 Bacterial signalling protein N terminal repeat RC54_RS00160 PF00072 Response regulator receiver domain RC54_RS00160 PF00486 Transcriptional regulatory protein, C terminal RC54_RS00165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS00165 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS00165 PF00672 HAMP domain RC54_RS00170 PF01381 Helix-turn-helix RC54_RS00175 PF04286 Protein of unknown function (DUF445) RC54_RS00180 PF00501 AMP-binding enzyme RC54_RS00180 PF13193 AMP-binding enzyme C-terminal domain RC54_RS00185 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS00185 PF13296 Putative type VI secretion system Rhs element Vgr RC54_RS00185 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RC54_RS00205 PF02203 Tar ligand binding domain homologue RC54_RS00205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS00205 PF00672 HAMP domain RC54_RS00215 PF00005 ABC transporter RC54_RS00225 PF07690 Major Facilitator Superfamily RC54_RS00230 PF03466 LysR substrate binding domain RC54_RS00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS00240 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RC54_RS00240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS00255 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RC54_RS00255 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RC54_RS00260 PF03466 LysR substrate binding domain RC54_RS00260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS00285 PF00117 Glutamine amidotransferase class-I RC54_RS00285 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RC54_RS00290 PF03466 LysR substrate binding domain RC54_RS00290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS00315 PF07664 Ferrous iron transport protein B C terminus RC54_RS00315 PF02421 Ferrous iron transport protein B RC54_RS00315 PF07670 Nucleoside recognition RC54_RS00325 PF13291 ACT domain RC54_RS00325 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS00345 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RC54_RS00345 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RC54_RS00350 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS00355 PF00005 ABC transporter RC54_RS00370 PF02705 K+ potassium transporter RC54_RS00375 PF00491 Arginase family RC54_RS00380 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS00385 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS00390 PF00005 ABC transporter RC54_RS00405 PF12091 Protein of unknown function (DUF3567) RC54_RS00410 PF02954 Bacterial regulatory protein, Fis family RC54_RS00410 PF00072 Response regulator receiver domain RC54_RS00410 PF00158 Sigma-54 interaction domain RC54_RS00415 PF00672 HAMP domain RC54_RS00415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS00415 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS00415 PF00989 PAS fold RC54_RS00425 PF01189 16S rRNA methyltransferase RsmB/F RC54_RS00425 PF01029 NusB family RC54_RS00440 PF03169 OPT oligopeptide transporter protein RC54_RS00455 PF00782 Dual specificity phosphatase, catalytic domain RC54_RS00460 PF12147 Putative methyltransferase RC54_RS00460 PF12146 Serine aminopeptidase, S33 RC54_RS00465 PF01066 CDP-alcohol phosphatidyltransferase RC54_RS00470 PF13335 Magnesium chelatase, subunit ChlI C-terminal RC54_RS00470 PF01078 Magnesium chelatase, subunit ChlI RC54_RS00475 PF04380 Membrane fusogenic activity RC54_RS00485 PF00543 Nitrogen regulatory protein P-II RC54_RS00490 PF00909 Ammonium Transporter Family RC54_RS00500 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RC54_RS00500 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RC54_RS00510 PF00381 PTS HPr component phosphorylation site RC54_RS00515 PF05524 PEP-utilising enzyme, N-terminal RC54_RS00515 PF00391 PEP-utilising enzyme, mobile domain RC54_RS00515 PF02896 PEP-utilising enzyme, TIM barrel domain RC54_RS00520 PF00561 alpha/beta hydrolase fold RC54_RS00530 PF07690 Major Facilitator Superfamily RC54_RS00550 PF03144 Elongation factor Tu domain 2 RC54_RS00550 PF03143 Elongation factor Tu C-terminal domain RC54_RS00550 PF00009 Elongation factor Tu GTP binding domain RC54_RS00565 PF02357 Transcription termination factor nusG RC54_RS00565 PF00467 KOW motif RC54_RS00570 PF03946 Ribosomal protein L11, N-terminal domain RC54_RS00570 PF00298 Ribosomal protein L11, RNA binding domain RC54_RS00575 PF00687 Ribosomal protein L1p/L10e family RC54_RS00585 PF00466 Ribosomal protein L10 RC54_RS00590 PF00542 Ribosomal protein L7/L12 C-terminal domain RC54_RS00590 PF16320 Ribosomal protein L7/L12 dimerisation domain RC54_RS00595 PF00562 RNA polymerase Rpb2, domain 6 RC54_RS00595 PF04563 RNA polymerase beta subunit RC54_RS00595 PF04561 RNA polymerase Rpb2, domain 2 RC54_RS00595 PF10385 RNA polymerase beta subunit external 1 domain RC54_RS00595 PF04565 RNA polymerase Rpb2, domain 3 RC54_RS00595 PF04560 RNA polymerase Rpb2, domain 7 RC54_RS00600 PF04997 RNA polymerase Rpb1, domain 1 RC54_RS00600 PF00623 RNA polymerase Rpb1, domain 2 RC54_RS00600 PF04983 RNA polymerase Rpb1, domain 3 RC54_RS00600 PF05000 RNA polymerase Rpb1, domain 4 RC54_RS00600 PF04998 RNA polymerase Rpb1, domain 5 RC54_RS00610 PF05171 Haemin-degrading HemS.ChuX domain RC54_RS00615 PF00164 Ribosomal protein S12/S23 RC54_RS00620 PF00177 Ribosomal protein S7p/S5e RC54_RS00625 PF00009 Elongation factor Tu GTP binding domain RC54_RS00625 PF03144 Elongation factor Tu domain 2 RC54_RS00625 PF00679 Elongation factor G C-terminus RC54_RS00625 PF14492 Elongation Factor G, domain II RC54_RS00625 PF03764 Elongation factor G, domain IV RC54_RS00630 PF03144 Elongation factor Tu domain 2 RC54_RS00630 PF03143 Elongation factor Tu C-terminal domain RC54_RS00630 PF00009 Elongation factor Tu GTP binding domain RC54_RS00635 PF00338 Ribosomal protein S10p/S20e RC54_RS00640 PF00297 Ribosomal protein L3 RC54_RS00645 PF00573 Ribosomal protein L4/L1 family RC54_RS00650 PF00276 Ribosomal protein L23 RC54_RS00655 PF03947 Ribosomal Proteins L2, C-terminal domain RC54_RS00655 PF00181 Ribosomal Proteins L2, RNA binding domain RC54_RS00660 PF00203 Ribosomal protein S19 RC54_RS00665 PF00237 Ribosomal protein L22p/L17e RC54_RS00670 PF00189 Ribosomal protein S3, C-terminal domain RC54_RS00670 PF07650 KH domain RC54_RS00675 PF00252 Ribosomal protein L16p/L10e RC54_RS00680 PF00831 Ribosomal L29 protein RC54_RS00685 PF00366 Ribosomal protein S17 RC54_RS00690 PF00238 Ribosomal protein L14p/L23e RC54_RS00695 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RC54_RS00700 PF00281 Ribosomal protein L5 RC54_RS00700 PF00673 ribosomal L5P family C-terminus RC54_RS00705 PF00253 Ribosomal protein S14p/S29e RC54_RS00710 PF00410 Ribosomal protein S8 RC54_RS00715 PF00347 Ribosomal protein L6 RC54_RS00720 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RC54_RS00725 PF03719 Ribosomal protein S5, C-terminal domain RC54_RS00725 PF00333 Ribosomal protein S5, N-terminal domain RC54_RS00730 PF00327 Ribosomal protein L30p/L7e RC54_RS00735 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RC54_RS00740 PF00344 SecY translocase RC54_RS00745 PF01176 Translation initiation factor 1A / IF-1 RC54_RS00750 PF00444 Ribosomal protein L36 RC54_RS00755 PF00416 Ribosomal protein S13/S18 RC54_RS00760 PF00411 Ribosomal protein S11 RC54_RS00765 PF01479 S4 domain RC54_RS00765 PF00163 Ribosomal protein S4/S9 N-terminal domain RC54_RS00770 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RC54_RS00770 PF01000 RNA polymerase Rpb3/RpoA insert domain RC54_RS00770 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RC54_RS00775 PF01196 Ribosomal protein L17 RC54_RS00780 PF03091 CutA1 divalent ion tolerance protein RC54_RS00785 PF02683 Cytochrome C biogenesis protein transmembrane region RC54_RS00785 PF11412 Disulphide bond corrector protein DsbC RC54_RS00790 PF10417 C-terminal domain of 1-Cys peroxiredoxin RC54_RS00790 PF00578 AhpC/TSA family RC54_RS00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS00800 PF03466 LysR substrate binding domain RC54_RS00805 PF00465 Iron-containing alcohol dehydrogenase RC54_RS00810 PF00171 Aldehyde dehydrogenase family RC54_RS00820 PF02627 Carboxymuconolactone decarboxylase family RC54_RS00825 PF08281 Sigma-70, region 4 RC54_RS00825 PF12680 SnoaL-like domain RC54_RS00825 PF04542 Sigma-70 region 2 RC54_RS00830 PF00490 Delta-aminolevulinic acid dehydratase RC54_RS00835 PF01926 50S ribosome-binding GTPase RC54_RS00840 PF00034 Cytochrome c RC54_RS00845 PF05140 ResB-like family RC54_RS00850 PF01578 Cytochrome C assembly protein RC54_RS00855 PF13419 Haloacid dehalogenase-like hydrolase RC54_RS00870 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RC54_RS00870 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RC54_RS00880 PF02556 Preprotein translocase subunit SecB RC54_RS00885 PF00462 Glutaredoxin RC54_RS00890 PF00581 Rhodanese-like domain RC54_RS00895 PF00300 Histidine phosphatase superfamily (branch 1) RC54_RS00900 PF01551 Peptidase family M23 RC54_RS00905 PF03572 Peptidase family S41 RC54_RS00905 PF13180 PDZ domain RC54_RS00910 PF00899 ThiF family RC54_RS00915 PF01258 Prokaryotic dksA/traR C4-type zinc finger RC54_RS00925 PF00593 TonB dependent receptor RC54_RS00925 PF07715 TonB-dependent Receptor Plug Domain RC54_RS00935 PF12833 Helix-turn-helix domain RC54_RS00935 PF02311 AraC-like ligand binding domain RC54_RS00940 PF01037 Lrp/AsnC ligand binding domain RC54_RS00950 PF13458 Periplasmic binding protein RC54_RS00955 PF05544 Proline racemase RC54_RS00960 PF02423 Ornithine cyclodeaminase/mu-crystallin family RC54_RS00965 PF02653 Branched-chain amino acid transport system / permease component RC54_RS00970 PF02653 Branched-chain amino acid transport system / permease component RC54_RS00970 PF11862 Domain of unknown function (DUF3382) RC54_RS00975 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS00975 PF00005 ABC transporter RC54_RS00980 PF00005 ABC transporter RC54_RS01000 PF00182 Chitinase class I RC54_RS01005 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS01010 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RC54_RS01010 PF14850 DNA-binding domain of Proline dehydrogenase RC54_RS01010 PF01619 Proline dehydrogenase RC54_RS01010 PF00171 Aldehyde dehydrogenase family RC54_RS01015 PF00227 Proteasome subunit RC54_RS01020 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS01020 PF07724 AAA domain (Cdc48 subfamily) RC54_RS01030 PF13609 Gram-negative porin RC54_RS01045 PF00593 TonB dependent receptor RC54_RS01045 PF07715 TonB-dependent Receptor Plug Domain RC54_RS01050 PF08334 Type II secretion system (T2SS), protein G RC54_RS01050 PF07963 Prokaryotic N-terminal methylation motif RC54_RS01055 PF01491 Frataxin-like domain RC54_RS01065 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RC54_RS01065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RC54_RS01080 PF02358 Trehalose-phosphatase RC54_RS01085 PF00723 Glycosyl hydrolases family 15 RC54_RS01090 PF00982 Glycosyltransferase family 20 RC54_RS01105 PF02938 GAD domain RC54_RS01105 PF00152 tRNA synthetases class II (D, K and N) RC54_RS01105 PF01336 OB-fold nucleic acid binding domain RC54_RS01120 PF00293 NUDIX domain RC54_RS01125 PF03372 Endonuclease/Exonuclease/phosphatase family RC54_RS01130 PF13091 PLD-like domain RC54_RS01135 PF02803 Thiolase, C-terminal domain RC54_RS01135 PF00108 Thiolase, N-terminal domain RC54_RS01145 PF00005 ABC transporter RC54_RS01150 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS01155 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS01160 PF01070 FMN-dependent dehydrogenase RC54_RS01165 PF07729 FCD domain RC54_RS01165 PF00392 Bacterial regulatory proteins, gntR family RC54_RS01175 PF01479 S4 domain RC54_RS01190 PF12806 Acetyl-CoA dehydrogenase C-terminal like RC54_RS01190 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS01190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS01190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS01195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RC54_RS01195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RC54_RS01195 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS01200 PF02803 Thiolase, C-terminal domain RC54_RS01200 PF00108 Thiolase, N-terminal domain RC54_RS01205 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS01210 PF01037 Lrp/AsnC ligand binding domain RC54_RS01215 PF00202 Aminotransferase class-III RC54_RS01235 PF01266 FAD dependent oxidoreductase RC54_RS01245 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS01245 PF08448 PAS fold RC54_RS01255 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS01255 PF00563 EAL domain RC54_RS01255 PF03707 Bacterial signalling protein N terminal repeat RC54_RS01260 PF01515 Phosphate acetyl/butaryl transferase RC54_RS01265 PF00871 Acetokinase family RC54_RS01270 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RC54_RS01275 PF00440 Bacterial regulatory proteins, tetR family RC54_RS01280 PF13533 Biotin-lipoyl like RC54_RS01285 PF00873 AcrB/AcrD/AcrF family RC54_RS01295 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS01300 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS01305 PF01547 Bacterial extracellular solute-binding protein RC54_RS01310 PF02449 Beta-galactosidase RC54_RS01310 PF08532 Beta-galactosidase trimerisation domain RC54_RS01310 PF08533 Beta-galactosidase C-terminal domain RC54_RS01315 PF00005 ABC transporter RC54_RS01315 PF17912 MalK OB fold domain RC54_RS01320 PF00356 Bacterial regulatory proteins, lacI family RC54_RS01325 PF00440 Bacterial regulatory proteins, tetR family RC54_RS01330 PF07690 Major Facilitator Superfamily RC54_RS01335 PF00563 EAL domain RC54_RS01335 PF00360 Phytochrome region RC54_RS01335 PF01590 GAF domain RC54_RS01335 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS01350 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS01365 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS01395 PF00012 Hsp70 protein RC54_RS01400 PF00248 Aldo/keto reductase family RC54_RS01405 PF00211 Adenylate and Guanylate cyclase catalytic domain RC54_RS01410 PF17287 POTRA domain RC54_RS01410 PF08479 POTRA domain, ShlB-type RC54_RS01410 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RC54_RS01430 PF01966 HD domain RC54_RS01440 PF00916 Sulfate permease family RC54_RS01440 PF01740 STAS domain RC54_RS01450 PF02321 Outer membrane efflux protein RC54_RS01455 PF00873 AcrB/AcrD/AcrF family RC54_RS01460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS01465 PF07859 alpha/beta hydrolase fold RC54_RS01470 PF03466 LysR substrate binding domain RC54_RS01470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS01475 PF12833 Helix-turn-helix domain RC54_RS01475 PF06719 AraC-type transcriptional regulator N-terminus RC54_RS01480 PF00248 Aldo/keto reductase family RC54_RS01485 PF03328 HpcH/HpaI aldolase/citrate lyase family RC54_RS01490 PF01266 FAD dependent oxidoreductase RC54_RS01500 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS01500 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RC54_RS01500 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RC54_RS01505 PF00216 Bacterial DNA-binding protein RC54_RS01515 PF02381 MraZ protein, putative antitoxin-like RC54_RS01520 PF01795 MraW methylase family RC54_RS01525 PF04999 Cell division protein FtsL RC54_RS01530 PF03717 Penicillin-binding Protein dimerisation domain RC54_RS01530 PF00905 Penicillin binding protein transpeptidase domain RC54_RS01535 PF02875 Mur ligase family, glutamate ligase domain RC54_RS01535 PF01225 Mur ligase family, catalytic domain RC54_RS01535 PF08245 Mur ligase middle domain RC54_RS01540 PF01225 Mur ligase family, catalytic domain RC54_RS01540 PF02875 Mur ligase family, glutamate ligase domain RC54_RS01540 PF08245 Mur ligase middle domain RC54_RS01545 PF00953 Glycosyl transferase family 4 RC54_RS01545 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RC54_RS01550 PF02875 Mur ligase family, glutamate ligase domain RC54_RS01550 PF08245 Mur ligase middle domain RC54_RS01555 PF01098 Cell cycle protein RC54_RS01560 PF04101 Glycosyltransferase family 28 C-terminal domain RC54_RS01560 PF03033 Glycosyltransferase family 28 N-terminal domain RC54_RS01565 PF08245 Mur ligase middle domain RC54_RS01565 PF02875 Mur ligase family, glutamate ligase domain RC54_RS01565 PF01225 Mur ligase family, catalytic domain RC54_RS01570 PF07478 D-ala D-ala ligase C-terminus RC54_RS01570 PF01820 D-ala D-ala ligase N-terminus RC54_RS01575 PF08478 POTRA domain, FtsQ-type RC54_RS01575 PF03799 Cell division protein FtsQ RC54_RS01580 PF02491 SHS2 domain inserted in FTSA RC54_RS01585 PF12327 FtsZ family, C-terminal domain RC54_RS01585 PF00091 Tubulin/FtsZ family, GTPase domain RC54_RS01590 PF08534 Redoxin RC54_RS01595 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RC54_RS01600 PF01568 Molydopterin dinucleotide binding domain RC54_RS01600 PF18364 Molybdopterin oxidoreductase N-terminal domain RC54_RS01600 PF00384 Molybdopterin oxidoreductase RC54_RS01610 PF01464 Transglycosylase SLT domain RC54_RS01610 PF10145 Phage-related minor tail protein RC54_RS01610 PF01551 Peptidase family M23 RC54_RS01615 PF07517 SecA DEAD-like domain RC54_RS01615 PF01043 SecA preprotein cross-linking domain RC54_RS01615 PF07516 SecA Wing and Scaffold domain RC54_RS01615 PF02810 SEC-C motif RC54_RS01625 PF01960 ArgJ family RC54_RS01635 PF00293 NUDIX domain RC54_RS01640 PF03884 DNA gyrase inhibitor YacG RC54_RS01645 PF07072 Cell division protein RC54_RS01650 PF01121 Dephospho-CoA kinase RC54_RS01655 PF01478 Type IV leader peptidase family RC54_RS01655 PF06750 Bacterial Peptidase A24 N-terminal domain RC54_RS01660 PF00482 Type II secretion system (T2SS), protein F RC54_RS01665 PF00437 Type II/IV secretion system protein RC54_RS01665 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RC54_RS01670 PF00571 CBS domain RC54_RS01670 PF03471 Transporter associated domain RC54_RS01670 PF01595 Cyclin M transmembrane N-terminal domain RC54_RS01680 PF01176 Translation initiation factor 1A / IF-1 RC54_RS01715 PF01757 Acyltransferase family RC54_RS01725 PF00348 Polyprenyl synthetase RC54_RS01730 PF00829 Ribosomal prokaryotic L21 protein RC54_RS01735 PF01016 Ribosomal L27 protein RC54_RS01740 PF01018 GTP1/OBG RC54_RS01740 PF01926 50S ribosome-binding GTPase RC54_RS01745 PF00696 Amino acid kinase family RC54_RS01745 PF01472 PUA domain RC54_RS01755 PF00293 NUDIX domain RC54_RS01760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC54_RS01760 PF03129 Anticodon binding domain RC54_RS01760 PF04073 Aminoacyl-tRNA editing domain RC54_RS01775 PF02881 SRP54-type protein, helical bundle domain RC54_RS01775 PF00448 SRP54-type protein, GTPase domain RC54_RS01775 PF02978 Signal peptide binding domain RC54_RS01780 PF09084 NMT1/THI5 like RC54_RS01785 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS01790 PF00005 ABC transporter RC54_RS01795 PF01578 Cytochrome C assembly protein RC54_RS01805 PF01510 N-acetylmuramoyl-L-alanine amidase RC54_RS01810 PF02867 Ribonucleotide reductase, barrel domain RC54_RS01810 PF00317 Ribonucleotide reductase, all-alpha domain RC54_RS01810 PF03477 ATP cone domain RC54_RS01815 PF00268 Ribonucleotide reductase, small chain RC54_RS01825 PF02325 YGGT family RC54_RS01830 PF00578 AhpC/TSA family RC54_RS01835 PF00294 pfkB family carbohydrate kinase RC54_RS01850 PF02785 Biotin carboxylase C-terminal domain RC54_RS01850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC54_RS01850 PF00289 Biotin carboxylase, N-terminal domain RC54_RS01855 PF00364 Biotin-requiring enzyme RC54_RS01860 PF01220 Dehydroquinase class II RC54_RS01865 PF00578 AhpC/TSA family RC54_RS01880 PF02203 Tar ligand binding domain homologue RC54_RS01880 PF00672 HAMP domain RC54_RS01880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS01890 PF08245 Mur ligase middle domain RC54_RS01890 PF02875 Mur ligase family, glutamate ligase domain RC54_RS01890 PF01225 Mur ligase family, catalytic domain RC54_RS01895 PF05728 Uncharacterised protein family (UPF0227) RC54_RS01900 PF04345 Chorismate lyase RC54_RS01905 PF00773 RNB domain RC54_RS01915 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RC54_RS01915 PF01488 Shikimate / quinate 5-dehydrogenase RC54_RS01915 PF08501 Shikimate dehydrogenase substrate binding domain RC54_RS01920 PF00912 Transglycosylase RC54_RS01925 PF01544 CorA-like Mg2+ transporter protein RC54_RS01935 PF03702 Anhydro-N-acetylmuramic acid kinase RC54_RS01945 PF01479 S4 domain RC54_RS01945 PF00579 tRNA synthetases class I (W and Y) RC54_RS01950 PF02580 D-Tyr-tRNA(Tyr) deacylase RC54_RS01960 PF00300 Histidine phosphatase superfamily (branch 1) RC54_RS01970 PF07804 HipA-like C-terminal domain RC54_RS01970 PF13657 HipA N-terminal domain RC54_RS01975 PF01207 Dihydrouridine synthase (Dus) RC54_RS01980 PF02954 Bacterial regulatory protein, Fis family RC54_RS01985 PF01808 AICARFT/IMPCHase bienzyme RC54_RS01985 PF02142 MGS-like domain RC54_RS02020 PF02075 Crossover junction endodeoxyribonuclease RuvC RC54_RS02025 PF05661 Protein of unknown function (DUF808) RC54_RS02030 PF01330 RuvA N terminal domain RC54_RS02030 PF07499 RuvA, C-terminal domain RC54_RS02035 PF05491 RuvB C-terminal winged helix domain RC54_RS02035 PF05496 Holliday junction DNA helicase RuvB P-loop domain RC54_RS02035 PF17864 RuvB AAA lid domain RC54_RS02045 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RC54_RS02055 PF10458 Valyl tRNA synthetase tRNA binding arm RC54_RS02055 PF08264 Anticodon-binding domain of tRNA RC54_RS02055 PF00133 tRNA synthetases class I (I, L, M and V) RC54_RS02060 PF01964 Radical SAM ThiC family RC54_RS02060 PF13667 ThiC-associated domain RC54_RS02070 PF05690 Thiazole biosynthesis protein ThiG RC54_RS02075 PF03070 TENA/THI-4/PQQC family RC54_RS02075 PF08543 Phosphomethylpyrimidine kinase RC54_RS02075 PF02581 Thiamine monophosphate synthase RC54_RS02080 PF02581 Thiamine monophosphate synthase RC54_RS02085 PF00210 Ferritin-like domain RC54_RS02090 PF07690 Major Facilitator Superfamily RC54_RS02100 PF13361 UvrD-like helicase C-terminal domain RC54_RS02100 PF00580 UvrD/REP helicase N-terminal domain RC54_RS02105 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RC54_RS02105 PF08479 POTRA domain, ShlB-type RC54_RS02105 PF17287 POTRA domain RC54_RS02115 PF05860 haemagglutination activity domain RC54_RS02115 PF13018 Extended Signal Peptide of Type V secretion system RC54_RS02115 PF13332 Hemagglutinin repeat RC54_RS02115 PF05860 haemagglutination activity domain RC54_RS02115 PF04829 Pre-toxin domain with VENN motif RC54_RS02115 PF04829 Pre-toxin domain with VENN motif RC54_RS02115 PF13018 Extended Signal Peptide of Type V secretion system RC54_RS02115 PF13332 Hemagglutinin repeat RC54_RS02145 PF04198 Putative sugar-binding domain RC54_RS02155 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS02160 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS02170 PF00005 ABC transporter RC54_RS02170 PF08402 TOBE domain RC54_RS02175 PF01232 Mannitol dehydrogenase Rossmann domain RC54_RS02175 PF08125 Mannitol dehydrogenase C-terminal domain RC54_RS02180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RC54_RS02180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RC54_RS02185 PF08447 PAS fold RC54_RS02185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS02195 PF01636 Phosphotransferase enzyme family RC54_RS02210 PF03641 Possible lysine decarboxylase RC54_RS02215 PF01612 3'-5' exonuclease RC54_RS02215 PF00476 DNA polymerase family A RC54_RS02215 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RC54_RS02215 PF01367 5'-3' exonuclease, C-terminal SAM fold RC54_RS02220 PF02203 Tar ligand binding domain homologue RC54_RS02220 PF00672 HAMP domain RC54_RS02220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS02230 PF01738 Dienelactone hydrolase family RC54_RS02240 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS02250 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RC54_RS02250 PF03171 2OG-Fe(II) oxygenase superfamily RC54_RS02255 PF00355 Rieske [2Fe-2S] domain RC54_RS02260 PF00005 ABC transporter RC54_RS02265 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS02270 PF01979 Amidohydrolase family RC54_RS02275 PF02622 Uncharacterized ACR, COG1678 RC54_RS02280 PF03652 Holliday junction resolvase RC54_RS02285 PF00156 Phosphoribosyl transferase domain RC54_RS02290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RC54_RS02290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RC54_RS02295 PF01979 Amidohydrolase family RC54_RS02300 PF01553 Acyltransferase RC54_RS02305 PF00149 Calcineurin-like phosphoesterase RC54_RS02310 PF16363 GDP-mannose 4,6 dehydratase RC54_RS02315 PF01370 NAD dependent epimerase/dehydratase family RC54_RS02320 PF16363 GDP-mannose 4,6 dehydratase RC54_RS02325 PF00483 Nucleotidyl transferase RC54_RS02330 PF01061 ABC-2 type transporter RC54_RS02335 PF14524 Wzt C-terminal domain RC54_RS02335 PF00005 ABC transporter RC54_RS02350 PF01531 Glycosyl transferase family 11 RC54_RS02355 PF00535 Glycosyl transferase family 2 RC54_RS02365 PF16363 GDP-mannose 4,6 dehydratase RC54_RS02370 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC54_RS02395 PF00535 Glycosyl transferase family 2 RC54_RS02405 PF05523 WxcM-like, C-terminal RC54_RS02415 PF00535 Glycosyl transferase family 2 RC54_RS02420 PF13439 Glycosyltransferase Family 4 RC54_RS02425 PF02397 Bacterial sugar transferase RC54_RS02430 PF02719 Polysaccharide biosynthesis protein RC54_RS02435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RC54_RS02435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RC54_RS02435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RC54_RS02435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RC54_RS02440 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RC54_RS02450 PF00534 Glycosyl transferases group 1 RC54_RS02450 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RC54_RS02455 PF01370 NAD dependent epimerase/dehydratase family RC54_RS02490 PF02321 Outer membrane efflux protein RC54_RS02490 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RC54_RS02495 PF00873 AcrB/AcrD/AcrF family RC54_RS02500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS02500 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS02505 PF08361 MAATS-type transcriptional repressor, C-terminal region RC54_RS02505 PF00440 Bacterial regulatory proteins, tetR family RC54_RS02510 PF00581 Rhodanese-like domain RC54_RS02520 PF00440 Bacterial regulatory proteins, tetR family RC54_RS02525 PF03692 Putative zinc- or iron-chelating domain RC54_RS02530 PF03960 ArsC family RC54_RS02535 PF02673 Bacitracin resistance protein BacA RC54_RS02540 PF02673 Bacitracin resistance protein BacA RC54_RS02545 PF00271 Helicase conserved C-terminal domain RC54_RS02545 PF09382 RQC domain RC54_RS02545 PF16124 RecQ zinc-binding RC54_RS02545 PF00570 HRDC domain RC54_RS02545 PF00270 DEAD/DEAH box helicase RC54_RS02550 PF02390 Putative methyltransferase RC54_RS02585 PF01411 tRNA synthetases class II (A) RC54_RS02585 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RC54_RS02585 PF02272 DHHA1 domain RC54_RS02595 PF01966 HD domain RC54_RS02600 PF00313 'Cold-shock' DNA-binding domain RC54_RS02605 PF01168 Alanine racemase, N-terminal domain RC54_RS02610 PF00155 Aminotransferase class I and II RC54_RS02610 PF00392 Bacterial regulatory proteins, gntR family RC54_RS02615 PF00117 Glutamine amidotransferase class-I RC54_RS02615 PF00958 GMP synthase C terminal domain RC54_RS02615 PF02540 NAD synthase RC54_RS02625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS02625 PF08447 PAS fold RC54_RS02640 PF13847 Methyltransferase domain RC54_RS02640 PF10119 Predicted methyltransferase regulatory domain RC54_RS02670 PF13593 SBF-like CPA transporter family (DUF4137) RC54_RS02675 PF03466 LysR substrate binding domain RC54_RS02675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS02690 PF01545 Cation efflux family RC54_RS02690 PF16916 Dimerisation domain of Zinc Transporter RC54_RS02710 PF02659 Putative manganese efflux pump RC54_RS02715 PF00920 Dehydratase family RC54_RS02720 PF01594 AI-2E family transporter RC54_RS02725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RC54_RS02730 PF03466 LysR substrate binding domain RC54_RS02730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS02735 PF07690 Major Facilitator Superfamily RC54_RS02740 PF02203 Tar ligand binding domain homologue RC54_RS02740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS02740 PF00672 HAMP domain RC54_RS02745 PF00005 ABC transporter RC54_RS02755 PF07690 Major Facilitator Superfamily RC54_RS02765 PF01494 FAD binding domain RC54_RS02785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS02785 PF13426 PAS domain RC54_RS02785 PF00072 Response regulator receiver domain RC54_RS02790 PF00563 EAL domain RC54_RS02790 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS02790 PF03707 Bacterial signalling protein N terminal repeat RC54_RS02790 PF13188 PAS domain RC54_RS02800 PF05974 Domain of unknown function (DUF892) RC54_RS02805 PF05067 Manganese containing catalase RC54_RS02825 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS02825 PF00107 Zinc-binding dehydrogenase RC54_RS02825 PF13823 Alcohol dehydrogenase GroES-associated RC54_RS02830 PF00672 HAMP domain RC54_RS02830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS02830 PF02203 Tar ligand binding domain homologue RC54_RS02835 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS02835 PF00989 PAS fold RC54_RS02835 PF01590 GAF domain RC54_RS02835 PF00563 EAL domain RC54_RS02850 PF02463 RecF/RecN/SMC N terminal domain RC54_RS02870 PF00909 Ammonium Transporter Family RC54_RS02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS02890 PF03466 LysR substrate binding domain RC54_RS02895 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RC54_RS02905 PF02926 THUMP domain RC54_RS02905 PF01170 Putative RNA methylase family UPF0020 RC54_RS02915 PF03653 Uncharacterised protein family (UPF0093) RC54_RS02920 PF00171 Aldehyde dehydrogenase family RC54_RS02935 PF09334 tRNA synthetases class I (M) RC54_RS02935 PF00133 tRNA synthetases class I (I, L, M and V) RC54_RS02935 PF13603 Leucyl-tRNA synthetase, Domain 2 RC54_RS02935 PF08264 Anticodon-binding domain of tRNA RC54_RS02940 PF00356 Bacterial regulatory proteins, lacI family RC54_RS02940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RC54_RS02950 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS02955 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS02960 PF00005 ABC transporter RC54_RS02965 PF00149 Calcineurin-like phosphoesterase RC54_RS02975 PF02472 Biopolymer transport protein ExbD/TolR RC54_RS02980 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS02985 PF01113 Dihydrodipicolinate reductase, N-terminus RC54_RS02985 PF05173 Dihydrodipicolinate reductase, C-terminus RC54_RS02990 PF04355 SmpA / OmlA family RC54_RS02995 PF01475 Ferric uptake regulator family RC54_RS03000 PF01628 HrcA protein C terminal domain RC54_RS03000 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding RC54_RS03010 PF01513 ATP-NAD kinase RC54_RS03015 PF02463 RecF/RecN/SMC N terminal domain RC54_RS03020 PF00762 Ferrochelatase RC54_RS03030 PF01025 GrpE RC54_RS03035 PF00012 Hsp70 protein RC54_RS03040 PF00684 DnaJ central domain RC54_RS03040 PF01556 DnaJ C terminal domain RC54_RS03040 PF00226 DnaJ domain RC54_RS03045 PF02548 Ketopantoate hydroxymethyltransferase RC54_RS03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS03060 PF01584 CheW-like domain RC54_RS03060 PF00072 Response regulator receiver domain RC54_RS03060 PF01627 Hpt domain RC54_RS03065 PF01740 STAS domain RC54_RS03070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS03070 PF01627 Hpt domain RC54_RS03070 PF09078 CheY binding RC54_RS03070 PF01584 CheW-like domain RC54_RS03070 PF02895 Signal transducing histidine kinase, homodimeric domain RC54_RS03075 PF17202 Single cache domain 3 RC54_RS03075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS03075 PF00672 HAMP domain RC54_RS03080 PF01584 CheW-like domain RC54_RS03085 PF01739 CheR methyltransferase, SAM binding domain RC54_RS03085 PF03705 CheR methyltransferase, all-alpha domain RC54_RS03090 PF00072 Response regulator receiver domain RC54_RS03090 PF01339 CheB methylesterase RC54_RS03095 PF00360 Phytochrome region RC54_RS03095 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS03095 PF01590 GAF domain RC54_RS03095 PF00563 EAL domain RC54_RS03100 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RC54_RS03105 PF12627 Probable RNA and SrmB- binding site of polymerase A RC54_RS03105 PF12626 Polymerase A arginine-rich C-terminus RC54_RS03105 PF01743 Poly A polymerase head domain RC54_RS03115 PF08299 Bacterial dnaA protein helix-turn-helix RC54_RS03115 PF11638 DnaA N-terminal domain RC54_RS03115 PF00308 Bacterial dnaA protein RC54_RS03120 PF01594 AI-2E family transporter RC54_RS03125 PF02769 AIR synthase related protein, C-terminal domain RC54_RS03125 PF00586 AIR synthase related protein, N-terminal domain RC54_RS03140 PF14403 Circularly permuted ATP-grasp type 2 RC54_RS03165 PF14403 Circularly permuted ATP-grasp type 2 RC54_RS03165 PF04168 A predicted alpha-helical domain with a conserved ER motif. RC54_RS03170 PF01841 Transglutaminase-like superfamily RC54_RS03170 PF08379 Bacterial transglutaminase-like N-terminal region RC54_RS03175 PF00474 Sodium:solute symporter family RC54_RS03185 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS03185 PF08521 Two-component sensor kinase N-terminal RC54_RS03190 PF00072 Response regulator receiver domain RC54_RS03190 PF00486 Transcriptional regulatory protein, C terminal RC54_RS03205 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS03210 PF09084 NMT1/THI5 like RC54_RS03225 PF00154 recA bacterial DNA recombination protein RC54_RS03230 PF02631 RecX family RC54_RS03235 PF08442 ATP-grasp domain RC54_RS03235 PF00549 CoA-ligase RC54_RS03240 PF00549 CoA-ligase RC54_RS03240 PF02629 CoA binding domain RC54_RS03245 PF03741 Integral membrane protein TerC family RC54_RS03250 PF00114 Pilin (bacterial filament) RC54_RS03250 PF07963 Prokaryotic N-terminal methylation motif RC54_RS03255 PF01967 MoaC family RC54_RS03260 PF13181 Tetratricopeptide repeat RC54_RS03260 PF01435 Peptidase family M48 RC54_RS03285 PF01063 Amino-transferase class IV RC54_RS03290 PF00162 Phosphoglycerate kinase RC54_RS03295 PF02887 Pyruvate kinase, alpha/beta domain RC54_RS03295 PF00224 Pyruvate kinase, barrel domain RC54_RS03300 PF01116 Fructose-bisphosphate aldolase class-II RC54_RS03305 PF01259 SAICAR synthetase RC54_RS03310 PF00731 AIR carboxylase RC54_RS03315 PF02222 ATP-grasp domain RC54_RS03315 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RC54_RS03320 PF03481 Putative GTP-binding controlling metal-binding RC54_RS03320 PF01300 Telomere recombination RC54_RS03325 PF03922 OmpW family RC54_RS03330 PF01613 Flavin reductase like domain RC54_RS03335 PF01625 Peptide methionine sulfoxide reductase RC54_RS03345 PF01243 Pyridoxamine 5'-phosphate oxidase RC54_RS03345 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RC54_RS03355 PF04264 YceI-like domain RC54_RS03370 PF08328 Adenylosuccinate lyase C-terminal RC54_RS03370 PF00206 Lyase RC54_RS03375 PF13417 Glutathione S-transferase, N-terminal domain RC54_RS03375 PF00043 Glutathione S-transferase, C-terminal domain RC54_RS03385 PF00210 Ferritin-like domain RC54_RS03390 PF02472 Biopolymer transport protein ExbD/TolR RC54_RS03395 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS03400 PF03544 Gram-negative bacterial TonB protein C-terminal RC54_RS03425 PF00293 NUDIX domain RC54_RS03430 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RC54_RS03430 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RC54_RS03435 PF02261 Aspartate decarboxylase RC54_RS03440 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RC54_RS03445 PF02233 NAD(P) transhydrogenase beta subunit RC54_RS03455 PF01494 FAD binding domain RC54_RS03460 PF00557 Metallopeptidase family M24 RC54_RS03460 PF05195 Aminopeptidase P, N-terminal domain RC54_RS03465 PF00483 Nucleotidyl transferase RC54_RS03470 PF01636 Phosphotransferase enzyme family RC54_RS03475 PF04453 LPS transport system D RC54_RS03480 PF00639 PPIC-type PPIASE domain RC54_RS03480 PF09312 SurA N-terminal domain RC54_RS03485 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RC54_RS03490 PF00398 Ribosomal RNA adenine dimethylase RC54_RS03500 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS03500 PF08448 PAS fold RC54_RS03500 PF08447 PAS fold RC54_RS03500 PF00563 EAL domain RC54_RS03505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RC54_RS03510 PF04116 Fatty acid hydroxylase superfamily RC54_RS03515 PF00654 Voltage gated chloride channel RC54_RS03540 PF02092 Glycyl-tRNA synthetase beta subunit RC54_RS03540 PF05746 DALR anticodon binding domain RC54_RS03545 PF02091 Glycyl-tRNA synthetase alpha subunit RC54_RS03550 PF00795 Carbon-nitrogen hydrolase RC54_RS03555 PF03471 Transporter associated domain RC54_RS03555 PF00571 CBS domain RC54_RS03560 PF02130 Uncharacterized protein family UPF0054 RC54_RS03565 PF02562 PhoH-like protein RC54_RS03570 PF01938 TRAM domain RC54_RS03570 PF04055 Radical SAM superfamily RC54_RS03570 PF00919 Uncharacterized protein family UPF0004 RC54_RS03575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS03575 PF03466 LysR substrate binding domain RC54_RS03580 PF00857 Isochorismatase family RC54_RS03585 PF00485 Phosphoribulokinase / Uridine kinase family RC54_RS03590 PF13407 Periplasmic binding protein domain RC54_RS03595 PF00005 ABC transporter RC54_RS03600 PF02653 Branched-chain amino acid transport system / permease component RC54_RS03610 PF00563 EAL domain RC54_RS03610 PF00360 Phytochrome region RC54_RS03610 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS03610 PF01590 GAF domain RC54_RS03625 PF01119 DNA mismatch repair protein, C-terminal domain RC54_RS03625 PF08676 MutL C terminal dimerisation domain RC54_RS03630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS03630 PF02203 Tar ligand binding domain homologue RC54_RS03630 PF00672 HAMP domain RC54_RS03635 PF13426 PAS domain RC54_RS03635 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS03635 PF00563 EAL domain RC54_RS03640 PF09335 SNARE associated Golgi protein RC54_RS03645 PF11741 AMIN domain RC54_RS03645 PF01520 N-acetylmuramoyl-L-alanine amidase RC54_RS03650 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RC54_RS03655 PF08331 Domain of unknown function (DUF1730) RC54_RS03665 PF00072 Response regulator receiver domain RC54_RS03665 PF00196 Bacterial regulatory proteins, luxR family RC54_RS03670 PF00989 PAS fold RC54_RS03670 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS03670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS03675 PF03480 Bacterial extracellular solute-binding protein, family 7 RC54_RS03680 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RC54_RS03685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RC54_RS03690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RC54_RS03690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RC54_RS03695 PF02899 Phage integrase, N-terminal SAM-like domain RC54_RS03695 PF00589 Phage integrase family RC54_RS03700 PF04073 Aminoacyl-tRNA editing domain RC54_RS03705 PF02660 Glycerol-3-phosphate acyltransferase RC54_RS03710 PF00814 Glycoprotease family RC54_RS03715 PF02885 Glycosyl transferase family, helical bundle domain RC54_RS03725 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS03725 PF03707 Bacterial signalling protein N terminal repeat RC54_RS03725 PF00563 EAL domain RC54_RS03730 PF01554 MatE RC54_RS03740 PF01197 Ribosomal protein L31 RC54_RS03745 PF07497 Rho termination factor, RNA-binding domain RC54_RS03745 PF07498 Rho termination factor, N-terminal domain RC54_RS03745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC54_RS03750 PF00085 Thioredoxin RC54_RS03760 PF13361 UvrD-like helicase C-terminal domain RC54_RS03760 PF00580 UvrD/REP helicase N-terminal domain RC54_RS03760 PF12705 PD-(D/E)XK nuclease superfamily RC54_RS03770 PF04107 Glutamate-cysteine ligase family 2(GCS2) RC54_RS03780 PF01165 Ribosomal protein S21 RC54_RS03790 PF08275 DNA primase catalytic core, N-terminal domain RC54_RS03790 PF08278 DNA primase DnaG DnaB-binding RC54_RS03790 PF01807 CHC2 zinc finger RC54_RS03790 PF10410 DnaB-helicase binding domain of primase RC54_RS03795 PF04539 Sigma-70 region 3 RC54_RS03795 PF04542 Sigma-70 region 2 RC54_RS03795 PF04545 Sigma-70, region 4 RC54_RS03795 PF00140 Sigma-70 factor, region 1.2 RC54_RS03795 PF03979 Sigma-70 factor, region 1.1 RC54_RS03795 PF04546 Sigma-70, non-essential region RC54_RS03805 PF00589 Phage integrase family RC54_RS04060 PF01425 Amidase RC54_RS04065 PF07690 Major Facilitator Superfamily RC54_RS04070 PF12833 Helix-turn-helix domain RC54_RS04070 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RC54_RS04080 PF00202 Aminotransferase class-III RC54_RS04095 PF03466 LysR substrate binding domain RC54_RS04095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS04100 PF01966 HD domain RC54_RS04100 PF11871 Domain of unknown function (DUF3391) RC54_RS04105 PF04945 YHS domain RC54_RS04110 PF00593 TonB dependent receptor RC54_RS04110 PF07715 TonB-dependent Receptor Plug Domain RC54_RS04115 PF00158 Sigma-54 interaction domain RC54_RS04120 PF03358 NADPH-dependent FMN reductase RC54_RS04125 PF00296 Luciferase-like monooxygenase RC54_RS04130 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS04130 PF00005 ABC transporter RC54_RS04140 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04150 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS04150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS04155 PF00005 ABC transporter RC54_RS04160 PF00939 Sodium:sulfate symporter transmembrane region RC54_RS04165 PF01381 Helix-turn-helix RC54_RS04170 PF00107 Zinc-binding dehydrogenase RC54_RS04170 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS04175 PF00455 DeoR C terminal sensor domain RC54_RS04175 PF08220 DeoR-like helix-turn-helix domain RC54_RS04180 PF01266 FAD dependent oxidoreductase RC54_RS04180 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RC54_RS04185 PF03459 TOBE domain RC54_RS04185 PF00005 ABC transporter RC54_RS04185 PF17912 MalK OB fold domain RC54_RS04190 PF17912 MalK OB fold domain RC54_RS04190 PF00005 ABC transporter RC54_RS04195 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS04200 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS04215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RC54_RS04215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RC54_RS04220 PF11871 Domain of unknown function (DUF3391) RC54_RS04220 PF01966 HD domain RC54_RS04230 PF07690 Major Facilitator Superfamily RC54_RS04235 PF12852 Cupin RC54_RS04235 PF12833 Helix-turn-helix domain RC54_RS04250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS04250 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS04250 PF18158 Adaptive response protein AidB N-terminal domain RC54_RS04255 PF01757 Acyltransferase family RC54_RS04260 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS04280 PF07152 YaeQ protein RC54_RS04290 PF07715 TonB-dependent Receptor Plug Domain RC54_RS04290 PF00593 TonB dependent receptor RC54_RS04295 PF13406 Transglycosylase SLT domain RC54_RS04300 PF00850 Histone deacetylase domain RC54_RS04310 PF07690 Major Facilitator Superfamily RC54_RS04315 PF01926 50S ribosome-binding GTPase RC54_RS04320 PF03180 NLPA lipoprotein RC54_RS04325 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS04330 PF09383 NIL domain RC54_RS04330 PF00005 ABC transporter RC54_RS04335 PF13609 Gram-negative porin RC54_RS04340 PF00118 TCP-1/cpn60 chaperonin family RC54_RS04345 PF00166 Chaperonin 10 Kd subunit RC54_RS04350 PF14525 AraC-binding-like domain RC54_RS04350 PF12833 Helix-turn-helix domain RC54_RS04360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS04360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS04360 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS04375 PF13458 Periplasmic binding protein RC54_RS04380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS04380 PF03466 LysR substrate binding domain RC54_RS04405 PF01494 FAD binding domain RC54_RS04430 PF01370 NAD dependent epimerase/dehydratase family RC54_RS04435 PF13188 PAS domain RC54_RS04435 PF00563 EAL domain RC54_RS04435 PF03707 Bacterial signalling protein N terminal repeat RC54_RS04435 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS04440 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04445 PF00005 ABC transporter RC54_RS04450 PF13407 Periplasmic binding protein domain RC54_RS04455 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04460 PF00294 pfkB family carbohydrate kinase RC54_RS04460 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RC54_RS04465 PF05025 RbsD / FucU transport protein family RC54_RS04470 PF00171 Aldehyde dehydrogenase family RC54_RS04475 PF01791 DeoC/LacD family aldolase RC54_RS04480 PF08220 DeoR-like helix-turn-helix domain RC54_RS04480 PF00455 DeoR C terminal sensor domain RC54_RS04485 PF00557 Metallopeptidase family M24 RC54_RS04490 PF00892 EamA-like transporter family RC54_RS04495 PF01047 MarR family RC54_RS04500 PF07690 Major Facilitator Superfamily RC54_RS04505 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RC54_RS04505 PF13378 Enolase C-terminal domain-like RC54_RS04510 PF01081 KDPG and KHG aldolase RC54_RS04515 PF05035 2-keto-3-deoxy-galactonokinase RC54_RS04525 PF13407 Periplasmic binding protein domain RC54_RS04530 PF00005 ABC transporter RC54_RS04535 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04540 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04545 PF13407 Periplasmic binding protein domain RC54_RS04550 PF00005 ABC transporter RC54_RS04555 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04560 PF00920 Dehydratase family RC54_RS04570 PF03466 LysR substrate binding domain RC54_RS04570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS04580 PF08450 SMP-30/Gluconolactonase/LRE-like region RC54_RS04590 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RC54_RS04590 PF13378 Enolase C-terminal domain-like RC54_RS04600 PF05336 L-rhamnose mutarotase RC54_RS04605 PF00005 ABC transporter RC54_RS04610 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04615 PF13407 Periplasmic binding protein domain RC54_RS04620 PF04909 Amidohydrolase RC54_RS04625 PF00440 Bacterial regulatory proteins, tetR family RC54_RS04630 PF01266 FAD dependent oxidoreductase RC54_RS04630 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RC54_RS04650 PF00106 short chain dehydrogenase RC54_RS04660 PF02308 MgtC family RC54_RS04670 PF13407 Periplasmic binding protein domain RC54_RS04675 PF00005 ABC transporter RC54_RS04680 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04685 PF00106 short chain dehydrogenase RC54_RS04690 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RC54_RS04690 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RC54_RS04700 PF05433 Glycine zipper 2TM domain RC54_RS04715 PF02540 NAD synthase RC54_RS04715 PF00117 Glutamine amidotransferase class-I RC54_RS04715 PF00958 GMP synthase C terminal domain RC54_RS04720 PF00593 TonB dependent receptor RC54_RS04720 PF07715 TonB-dependent Receptor Plug Domain RC54_RS04730 PF08281 Sigma-70, region 4 RC54_RS04730 PF04542 Sigma-70 region 2 RC54_RS04735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS04735 PF03466 LysR substrate binding domain RC54_RS04740 PF00850 Histone deacetylase domain RC54_RS04745 PF00083 Sugar (and other) transporter RC54_RS04745 PF07690 Major Facilitator Superfamily RC54_RS04750 PF00171 Aldehyde dehydrogenase family RC54_RS04755 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS04760 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS04770 PF08402 TOBE domain RC54_RS04770 PF00005 ABC transporter RC54_RS04775 PF00202 Aminotransferase class-III RC54_RS04780 PF00392 Bacterial regulatory proteins, gntR family RC54_RS04780 PF00155 Aminotransferase class I and II RC54_RS04785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RC54_RS04785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RC54_RS04795 PF03471 Transporter associated domain RC54_RS04795 PF00571 CBS domain RC54_RS04795 PF01595 Cyclin M transmembrane N-terminal domain RC54_RS04810 PF00356 Bacterial regulatory proteins, lacI family RC54_RS04810 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RC54_RS04815 PF02447 GntP family permease RC54_RS04820 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RC54_RS04820 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RC54_RS04830 PF00107 Zinc-binding dehydrogenase RC54_RS04830 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS04835 PF00672 HAMP domain RC54_RS04835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS04840 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS04840 PF00107 Zinc-binding dehydrogenase RC54_RS04845 PF02734 DAK2 domain RC54_RS04850 PF02733 Dak1 domain RC54_RS04860 PF13407 Periplasmic binding protein domain RC54_RS04865 PF02653 Branched-chain amino acid transport system / permease component RC54_RS04870 PF00005 ABC transporter RC54_RS04875 PF02502 Ribose/Galactose Isomerase RC54_RS04880 PF04198 Putative sugar-binding domain RC54_RS04880 PF00325 Bacterial regulatory proteins, crp family RC54_RS04885 PF00923 Transaldolase/Fructose-6-phosphate aldolase RC54_RS04890 PF01418 Helix-turn-helix domain, rpiR family RC54_RS04890 PF01380 SIS domain RC54_RS04895 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RC54_RS04895 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RC54_RS04900 PF00342 Phosphoglucose isomerase RC54_RS04905 PF00920 Dehydratase family RC54_RS04910 PF01081 KDPG and KHG aldolase RC54_RS04935 PF01790 Prolipoprotein diacylglyceryl transferase RC54_RS04940 PF03466 LysR substrate binding domain RC54_RS04940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS04945 PF00034 Cytochrome c RC54_RS04955 PF13396 Phospholipase_D-nuclease N-terminal RC54_RS04955 PF13091 PLD-like domain RC54_RS04960 PF00175 Oxidoreductase NAD-binding domain RC54_RS04960 PF00667 FAD binding domain RC54_RS04960 PF00258 Flavodoxin RC54_RS04970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS04970 PF03466 LysR substrate binding domain RC54_RS04975 PF07690 Major Facilitator Superfamily RC54_RS04980 PF04209 homogentisate 1,2-dioxygenase RC54_RS04990 PF13417 Glutathione S-transferase, N-terminal domain RC54_RS05005 PF01037 Lrp/AsnC ligand binding domain RC54_RS05010 PF00202 Aminotransferase class-III RC54_RS05020 PF13673 Acetyltransferase (GNAT) domain RC54_RS05020 PF18014 Acetyltransferase (GNAT) domain RC54_RS05025 PF00171 Aldehyde dehydrogenase family RC54_RS05030 PF01266 FAD dependent oxidoreductase RC54_RS05035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS05050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS05055 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS05060 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS05060 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS05065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS05065 PF00005 ABC transporter RC54_RS05075 PF01266 FAD dependent oxidoreductase RC54_RS05080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS05080 PF03466 LysR substrate binding domain RC54_RS05085 PF01042 Endoribonuclease L-PSP RC54_RS05090 PF00171 Aldehyde dehydrogenase family RC54_RS05095 PF01546 Peptidase family M20/M25/M40 RC54_RS05095 PF07687 Peptidase dimerisation domain RC54_RS05100 PF14031 Putative serine dehydratase domain RC54_RS05100 PF01168 Alanine racemase, N-terminal domain RC54_RS05105 PF03466 LysR substrate binding domain RC54_RS05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS05115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS05115 PF02203 Tar ligand binding domain homologue RC54_RS05115 PF00672 HAMP domain RC54_RS05120 PF01515 Phosphate acetyl/butaryl transferase RC54_RS05120 PF03949 Malic enzyme, NAD binding domain RC54_RS05120 PF00390 Malic enzyme, N-terminal domain RC54_RS05125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS05125 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS05130 PF00072 Response regulator receiver domain RC54_RS05130 PF00486 Transcriptional regulatory protein, C terminal RC54_RS05140 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS05180 PF13180 PDZ domain RC54_RS05185 PF00248 Aldo/keto reductase family RC54_RS05190 PF00356 Bacterial regulatory proteins, lacI family RC54_RS05195 PF13378 Enolase C-terminal domain-like RC54_RS05195 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RC54_RS05220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RC54_RS05220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RC54_RS05225 PF02601 Exonuclease VII, large subunit RC54_RS05225 PF13742 OB-fold nucleic acid binding domain RC54_RS05230 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS05235 PF02472 Biopolymer transport protein ExbD/TolR RC54_RS05240 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RC54_RS05245 PF03966 Trm112p-like protein RC54_RS05250 PF02348 Cytidylyltransferase RC54_RS05255 PF05191 Adenylate kinase, active site lid RC54_RS05260 PF03030 Inorganic H+ pyrophosphatase RC54_RS05270 PF00545 ribonuclease RC54_RS05280 PF00551 Formyl transferase RC54_RS05285 PF01189 16S rRNA methyltransferase RsmB/F RC54_RS05285 PF01029 NusB family RC54_RS05290 PF13091 PLD-like domain RC54_RS05295 PF00924 Mechanosensitive ion channel RC54_RS05305 PF00471 Ribosomal protein L33 RC54_RS05310 PF00830 Ribosomal L28 family RC54_RS05315 PF04002 RadC-like JAB domain RC54_RS05320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RC54_RS05325 PF02401 LytB protein RC54_RS05330 PF02653 Branched-chain amino acid transport system / permease component RC54_RS05335 PF02653 Branched-chain amino acid transport system / permease component RC54_RS05335 PF11862 Domain of unknown function (DUF3382) RC54_RS05340 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS05340 PF00005 ABC transporter RC54_RS05345 PF00005 ABC transporter RC54_RS05365 PF00210 Ferritin-like domain RC54_RS05370 PF05532 CsbD-like RC54_RS05380 PF04972 BON domain RC54_RS05385 PF00196 Bacterial regulatory proteins, luxR family RC54_RS05385 PF00072 Response regulator receiver domain RC54_RS05390 PF01339 CheB methylesterase RC54_RS05390 PF00072 Response regulator receiver domain RC54_RS05395 PF07730 Histidine kinase RC54_RS05395 PF05384 Sensor protein DegS RC54_RS05395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS05410 PF05433 Glycine zipper 2TM domain RC54_RS05430 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS05435 PF00005 ABC transporter RC54_RS05445 PF04241 Protein of unknown function (DUF423) RC54_RS05465 PF00392 Bacterial regulatory proteins, gntR family RC54_RS05465 PF07729 FCD domain RC54_RS05470 PF01070 FMN-dependent dehydrogenase RC54_RS05520 PF00691 OmpA family RC54_RS05525 PF04052 TolB amino-terminal domain RC54_RS05525 PF07676 WD40-like Beta Propeller Repeat RC54_RS05535 PF02472 Biopolymer transport protein ExbD/TolR RC54_RS05540 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS05545 PF03061 Thioesterase superfamily RC54_RS05550 PF00106 short chain dehydrogenase RC54_RS05555 PF00464 Serine hydroxymethyltransferase RC54_RS05560 PF03477 ATP cone domain RC54_RS05585 PF00271 Helicase conserved C-terminal domain RC54_RS05585 PF17191 RecG wedge domain RC54_RS05585 PF00270 DEAD/DEAH box helicase RC54_RS05590 PF02547 Queuosine biosynthesis protein RC54_RS05595 PF01702 Queuine tRNA-ribosyltransferase RC54_RS05600 PF00072 Response regulator receiver domain RC54_RS05600 PF01627 Hpt domain RC54_RS05600 PF00672 HAMP domain RC54_RS05600 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS05600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS05605 PF00072 Response regulator receiver domain RC54_RS05605 PF00196 Bacterial regulatory proteins, luxR family RC54_RS05615 PF00072 Response regulator receiver domain RC54_RS05620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS05620 PF00072 Response regulator receiver domain RC54_RS05620 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RC54_RS05620 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS05620 PF00672 HAMP domain RC54_RS05620 PF01627 Hpt domain RC54_RS05630 PF02699 Preprotein translocase subunit RC54_RS05635 PF07549 SecD/SecF GG Motif RC54_RS05635 PF13721 SecD export protein N-terminal TM region RC54_RS05635 PF02355 Protein export membrane protein RC54_RS05640 PF02355 Protein export membrane protein RC54_RS05640 PF07549 SecD/SecF GG Motif RC54_RS05645 PF00899 ThiF family RC54_RS05650 PF00892 EamA-like transporter family RC54_RS05660 PF00141 Peroxidase RC54_RS05665 PF01966 HD domain RC54_RS05670 PF12833 Helix-turn-helix domain RC54_RS05670 PF12852 Cupin RC54_RS05690 PF00534 Glycosyl transferases group 1 RC54_RS05690 PF13439 Glycosyltransferase Family 4 RC54_RS05695 PF02203 Tar ligand binding domain homologue RC54_RS05695 PF00672 HAMP domain RC54_RS05695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS05700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS05700 PF00672 HAMP domain RC54_RS05700 PF02203 Tar ligand binding domain homologue RC54_RS05710 PF00672 HAMP domain RC54_RS05710 PF02203 Tar ligand binding domain homologue RC54_RS05710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS05720 PF17941 Polyphosphate kinase C-terminal domain 1 RC54_RS05720 PF02503 Polyphosphate kinase middle domain RC54_RS05720 PF13090 Polyphosphate kinase C-terminal domain 2 RC54_RS05720 PF13089 Polyphosphate kinase N-terminal domain RC54_RS05725 PF12849 PBP superfamily domain RC54_RS05730 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS05735 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS05740 PF00005 ABC transporter RC54_RS05745 PF01895 PhoU domain RC54_RS05750 PF00486 Transcriptional regulatory protein, C terminal RC54_RS05750 PF00072 Response regulator receiver domain RC54_RS05755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS05755 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS05755 PF00989 PAS fold RC54_RS05755 PF11808 Phosphate regulon sensor protein PhoR RC54_RS05760 PF00672 HAMP domain RC54_RS05760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS05760 PF02203 Tar ligand binding domain homologue RC54_RS05770 PF01557 Fumarylacetoacetate (FAA) hydrolase family RC54_RS05775 PF17862 AAA+ lid domain RC54_RS05775 PF01434 Peptidase family M41 RC54_RS05775 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS05820 PF00665 Integrase core domain RC54_RS05825 PF07690 Major Facilitator Superfamily RC54_RS05835 PF00563 EAL domain RC54_RS05835 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS05835 PF03707 Bacterial signalling protein N terminal repeat RC54_RS05845 PF00239 Resolvase, N terminal domain RC54_RS05845 PF02796 Helix-turn-helix domain of resolvase RC54_RS05850 PF00563 EAL domain RC54_RS05850 PF05231 MASE1 RC54_RS05865 PF08479 POTRA domain, ShlB-type RC54_RS05865 PF17287 POTRA domain RC54_RS05865 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RC54_RS05870 PF18254 HMW1 domain 2 RC54_RS05870 PF18071 HMW1C N-terminal RC54_RS05875 PF05860 haemagglutination activity domain RC54_RS05880 PF01370 NAD dependent epimerase/dehydratase family RC54_RS05885 PF16363 GDP-mannose 4,6 dehydratase RC54_RS05895 PF04055 Radical SAM superfamily RC54_RS05895 PF18693 TRAM domain RC54_RS05895 PF00919 Uncharacterized protein family UPF0004 RC54_RS05900 PF16363 GDP-mannose 4,6 dehydratase RC54_RS05915 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS05930 PF03412 Peptidase C39 family RC54_RS05930 PF00005 ABC transporter RC54_RS05930 PF00664 ABC transporter transmembrane region RC54_RS05950 PF00239 Resolvase, N terminal domain RC54_RS05950 PF02796 Helix-turn-helix domain of resolvase RC54_RS05960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RC54_RS05965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS05965 PF03466 LysR substrate binding domain RC54_RS05970 PF00216 Bacterial DNA-binding protein RC54_RS06040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC54_RS06040 PF00205 Thiamine pyrophosphate enzyme, central domain RC54_RS06040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RC54_RS06055 PF18081 Fanconi anemia-associated nuclease SAP domain RC54_RS06055 PF08774 VRR-NUC domain RC54_RS06070 PF03552 Cellulose synthase RC54_RS06070 PF00535 Glycosyl transferase family 2 RC54_RS06070 PF07238 PilZ domain RC54_RS06075 PF03170 Bacterial cellulose synthase subunit RC54_RS06080 PF01270 Glycosyl hydrolases family 8 RC54_RS06085 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) RC54_RS06085 PF13181 Tetratricopeptide repeat RC54_RS06100 PF03062 MBOAT, membrane-bound O-acyltransferase family RC54_RS06105 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX RC54_RS06120 PF06470 SMC proteins Flexible Hinge Domain RC54_RS06120 PF02463 RecF/RecN/SMC N terminal domain RC54_RS06130 PF12146 Serine aminopeptidase, S33 RC54_RS06135 PF02426 Muconolactone delta-isomerase RC54_RS06140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS06140 PF03466 LysR substrate binding domain RC54_RS06145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RC54_RS06145 PF13378 Enolase C-terminal domain-like RC54_RS06150 PF00775 Dioxygenase RC54_RS06150 PF04444 Catechol dioxygenase N terminus RC54_RS06155 PF00355 Rieske [2Fe-2S] domain RC54_RS06155 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RC54_RS06160 PF00866 Ring hydroxylating beta subunit RC54_RS06165 PF00970 Oxidoreductase FAD-binding domain RC54_RS06165 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS06165 PF00175 Oxidoreductase NAD-binding domain RC54_RS06170 PF00106 short chain dehydrogenase RC54_RS06175 PF01042 Endoribonuclease L-PSP RC54_RS06180 PF07690 Major Facilitator Superfamily RC54_RS06185 PF03594 Benzoate membrane transport protein RC54_RS06190 PF01926 50S ribosome-binding GTPase RC54_RS06195 PF01926 50S ribosome-binding GTPase RC54_RS06210 PF01292 Prokaryotic cytochrome b561 RC54_RS06215 PF00174 Oxidoreductase molybdopterin binding domain RC54_RS06220 PF02203 Tar ligand binding domain homologue RC54_RS06220 PF00672 HAMP domain RC54_RS06220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS06225 PF00072 Response regulator receiver domain RC54_RS06225 PF00196 Bacterial regulatory proteins, luxR family RC54_RS06230 PF01613 Flavin reductase like domain RC54_RS06235 PF00175 Oxidoreductase NAD-binding domain RC54_RS06235 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS06245 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RC54_RS06245 PF00355 Rieske [2Fe-2S] domain RC54_RS06250 PF01425 Amidase RC54_RS06255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS06255 PF03466 LysR substrate binding domain RC54_RS06260 PF13609 Gram-negative porin RC54_RS06265 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS06265 PF00989 PAS fold RC54_RS06265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS06270 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS06295 PF00005 ABC transporter RC54_RS06295 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS06300 PF00005 ABC transporter RC54_RS06305 PF08546 Ketopantoate reductase PanE/ApbA C terminal RC54_RS06305 PF02558 Ketopantoate reductase PanE/ApbA RC54_RS06310 PF00596 Class II Aldolase and Adducin N-terminal domain RC54_RS06330 PF06715 Gp5 C-terminal repeat (3 copies) RC54_RS06330 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS06335 PF17922 Tetracyclin repressor-like, C-terminal domain RC54_RS06335 PF00440 Bacterial regulatory proteins, tetR family RC54_RS06340 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS06340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS06345 PF00873 AcrB/AcrD/AcrF family RC54_RS06350 PF02321 Outer membrane efflux protein RC54_RS06355 PF08361 MAATS-type transcriptional repressor, C-terminal region RC54_RS06355 PF00440 Bacterial regulatory proteins, tetR family RC54_RS06360 PF07690 Major Facilitator Superfamily RC54_RS06365 PF01425 Amidase RC54_RS06375 PF01266 FAD dependent oxidoreductase RC54_RS06380 PF00360 Phytochrome region RC54_RS06380 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS06380 PF01590 GAF domain RC54_RS06380 PF00563 EAL domain RC54_RS06385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS06385 PF00672 HAMP domain RC54_RS06385 PF02203 Tar ligand binding domain homologue RC54_RS06390 PF13411 MerR HTH family regulatory protein RC54_RS06395 PF02203 Tar ligand binding domain homologue RC54_RS06395 PF00672 HAMP domain RC54_RS06395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS06400 PF00989 PAS fold RC54_RS06400 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS06400 PF01590 GAF domain RC54_RS06400 PF00563 EAL domain RC54_RS06405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS06405 PF03466 LysR substrate binding domain RC54_RS06420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS06420 PF00072 Response regulator receiver domain RC54_RS06420 PF13426 PAS domain RC54_RS06420 PF08448 PAS fold RC54_RS06420 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS06425 PF00072 Response regulator receiver domain RC54_RS06425 PF07495 Y_Y_Y domain RC54_RS06425 PF07494 Two component regulator propeller RC54_RS06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS06425 PF12833 Helix-turn-helix domain RC54_RS06425 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS06435 PF00701 Dihydrodipicolinate synthetase family RC54_RS06440 PF03466 LysR substrate binding domain RC54_RS06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS06445 PF00392 Bacterial regulatory proteins, gntR family RC54_RS06445 PF07729 FCD domain RC54_RS06455 PF01205 Uncharacterized protein family UPF0029 RC54_RS06455 PF09186 Domain of unknown function (DUF1949) RC54_RS06465 PF01734 Patatin-like phospholipase RC54_RS06475 PF00877 NlpC/P60 family RC54_RS06480 PF03928 Haem-degrading RC54_RS06485 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RC54_RS06485 PF00117 Glutamine amidotransferase class-I RC54_RS06490 PF02142 MGS-like domain RC54_RS06490 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RC54_RS06490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC54_RS06495 PF01272 Transcription elongation factor, GreA/GreB, C-term RC54_RS06495 PF03449 Transcription elongation factor, N-terminal RC54_RS06500 PF01985 CRS1 / YhbY (CRM) domain RC54_RS06505 PF01728 FtsJ-like methyltransferase RC54_RS06510 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS06510 PF01434 Peptidase family M41 RC54_RS06510 PF17862 AAA+ lid domain RC54_RS06510 PF06480 FtsH Extracellular RC54_RS06515 PF00809 Pterin binding enzyme RC54_RS06520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RC54_RS06520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RC54_RS06520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RC54_RS06520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RC54_RS06525 PF00486 Transcriptional regulatory protein, C terminal RC54_RS06525 PF00072 Response regulator receiver domain RC54_RS06530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC54_RS06530 PF00034 Cytochrome c RC54_RS06530 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RC54_RS06540 PF17092 Penicillin-binding protein OB-like domain RC54_RS06540 PF00912 Transglycosylase RC54_RS06540 PF00905 Penicillin binding protein transpeptidase domain RC54_RS06545 PF16326 ABC transporter C-terminal domain RC54_RS06545 PF00005 ABC transporter RC54_RS06545 PF12848 ABC transporter RC54_RS06550 PF13369 Transglutaminase-like superfamily RC54_RS06555 PF03023 Lipid II flippase MurJ RC54_RS06560 PF01649 Ribosomal protein S20 RC54_RS06575 PF00849 RNA pseudouridylate synthase RC54_RS06580 PF00180 Isocitrate/isopropylmalate dehydrogenase RC54_RS06585 PF00313 'Cold-shock' DNA-binding domain RC54_RS06590 PF02617 ATP-dependent Clp protease adaptor protein ClpS RC54_RS06595 PF02861 Clp amino terminal domain, pathogenicity island component RC54_RS06595 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS06595 PF07724 AAA domain (Cdc48 subfamily) RC54_RS06595 PF10431 C-terminal, D2-small domain, of ClpB protein RC54_RS06595 PF17871 AAA lid domain RC54_RS06605 PF00692 dUTPase RC54_RS06610 PF02441 Flavoprotein RC54_RS06610 PF04127 DNA / pantothenate metabolism flavoprotein RC54_RS06615 PF01252 Signal peptidase (SPase) II RC54_RS06620 PF08264 Anticodon-binding domain of tRNA RC54_RS06620 PF06827 Zinc finger found in FPG and IleRS RC54_RS06620 PF00133 tRNA synthetases class I (I, L, M and V) RC54_RS06625 PF01687 Riboflavin kinase RC54_RS06625 PF06574 FAD synthetase RC54_RS06630 PF00392 Bacterial regulatory proteins, gntR family RC54_RS06630 PF07729 FCD domain RC54_RS06640 PF00857 Isochorismatase family RC54_RS06645 PF00005 ABC transporter RC54_RS06650 PF00857 Isochorismatase family RC54_RS06655 PF02653 Branched-chain amino acid transport system / permease component RC54_RS06670 PF12857 TOBE-like domain RC54_RS06670 PF00005 ABC transporter RC54_RS06675 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS06680 PF09084 NMT1/THI5 like RC54_RS06685 PF01425 Amidase RC54_RS06690 PF04452 RNA methyltransferase RC54_RS06695 PF02779 Transketolase, pyrimidine binding domain RC54_RS06695 PF00456 Transketolase, thiamine diphosphate binding domain RC54_RS06695 PF02780 Transketolase, C-terminal domain RC54_RS06705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RC54_RS06705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RC54_RS06715 PF08241 Methyltransferase domain RC54_RS06720 PF08335 GlnD PII-uridylyltransferase RC54_RS06720 PF03710 Glutamate-ammonia ligase adenylyltransferase RC54_RS06730 PF00795 Carbon-nitrogen hydrolase RC54_RS06735 PF01523 Putative modulator of DNA gyrase RC54_RS06740 PF00793 DAHP synthetase I family RC54_RS06745 PF04461 Protein of unknown function (DUF520) RC54_RS06750 PF01565 FAD binding domain RC54_RS06750 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RC54_RS06760 PF06865 Pyrimidine/purine nucleoside phosphorylase RC54_RS06765 PF00764 Arginosuccinate synthase RC54_RS06770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RC54_RS06770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RC54_RS06775 PF03193 RsgA GTPase RC54_RS06780 PF01329 Pterin 4 alpha carbinolamine dehydratase RC54_RS06785 PF01435 Peptidase family M48 RC54_RS06790 PF00929 Exonuclease RC54_RS06795 PF02810 SEC-C motif RC54_RS06795 PF03695 Uncharacterised protein family (UPF0149) RC54_RS06805 PF01636 Phosphotransferase enzyme family RC54_RS06830 PF13276 HTH-like domain RC54_RS06830 PF00665 Integrase core domain RC54_RS06865 PF02203 Tar ligand binding domain homologue RC54_RS06865 PF00672 HAMP domain RC54_RS06865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS06870 PF03352 Methyladenine glycosylase RC54_RS06870 PF13673 Acetyltransferase (GNAT) domain RC54_RS06870 PF00117 Glutamine amidotransferase class-I RC54_RS06870 PF00958 GMP synthase C terminal domain RC54_RS06870 PF13302 Acetyltransferase (GNAT) domain RC54_RS06875 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RC54_RS06875 PF01580 FtsK/SpoIIIE family RC54_RS06875 PF17854 FtsK alpha domain RC54_RS06875 PF09397 Ftsk gamma domain RC54_RS06880 PF00171 Aldehyde dehydrogenase family RC54_RS06885 PF03631 Virulence factor BrkB RC54_RS06900 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS06910 PF01266 FAD dependent oxidoreductase RC54_RS06920 PF04364 DNA polymerase III chi subunit, HolC RC54_RS06935 PF01432 Peptidase family M3 RC54_RS06940 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RC54_RS06940 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RC54_RS06945 PF04262 Glutamate-cysteine ligase RC54_RS06950 PF00456 Transketolase, thiamine diphosphate binding domain RC54_RS06950 PF17831 Pyruvate dehydrogenase E1 component middle domain RC54_RS06955 PF02817 e3 binding domain RC54_RS06955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RC54_RS06955 PF00364 Biotin-requiring enzyme RC54_RS06960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RC54_RS06960 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS06965 PF02913 FAD linked oxidases, C-terminal domain RC54_RS06965 PF01565 FAD binding domain RC54_RS06970 PF01177 Asp/Glu/Hydantoin racemase RC54_RS06975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS06975 PF03466 LysR substrate binding domain RC54_RS06980 PF00701 Dihydrodipicolinate synthetase family RC54_RS06985 PF00106 short chain dehydrogenase RC54_RS06990 PF01979 Amidohydrolase family RC54_RS06995 PF00795 Carbon-nitrogen hydrolase RC54_RS07000 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS07005 PF00005 ABC transporter RC54_RS07010 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07015 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07020 PF00005 ABC transporter RC54_RS07025 PF09084 NMT1/THI5 like RC54_RS07030 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07045 PF12697 Alpha/beta hydrolase family RC54_RS07050 PF01614 Bacterial transcriptional regulator RC54_RS07050 PF09339 IclR helix-turn-helix domain RC54_RS07065 PF03447 Homoserine dehydrogenase, NAD binding domain RC54_RS07065 PF01958 Domain of unknown function DUF108 RC54_RS07070 PF00171 Aldehyde dehydrogenase family RC54_RS07080 PF01494 FAD binding domain RC54_RS07090 PF00355 Rieske [2Fe-2S] domain RC54_RS07095 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS07100 PF13609 Gram-negative porin RC54_RS07105 PF00672 HAMP domain RC54_RS07105 PF02203 Tar ligand binding domain homologue RC54_RS07105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS07110 PF07690 Major Facilitator Superfamily RC54_RS07120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS07120 PF03466 LysR substrate binding domain RC54_RS07135 PF00267 Gram-negative porin RC54_RS07140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS07140 PF03466 LysR substrate binding domain RC54_RS07150 PF00005 ABC transporter RC54_RS07150 PF08402 TOBE domain RC54_RS07215 PF00180 Isocitrate/isopropylmalate dehydrogenase RC54_RS07220 PF01263 Aldose 1-epimerase RC54_RS07225 PF03466 LysR substrate binding domain RC54_RS07225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS07235 PF12727 PBP superfamily domain RC54_RS07235 PF12728 Helix-turn-helix domain RC54_RS07240 PF07690 Major Facilitator Superfamily RC54_RS07250 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RC54_RS07250 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RC54_RS07250 PF00037 4Fe-4S binding domain RC54_RS07255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC54_RS07255 PF00384 Molybdopterin oxidoreductase RC54_RS07255 PF00037 4Fe-4S binding domain RC54_RS07255 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RC54_RS07255 PF01568 Molydopterin dinucleotide binding domain RC54_RS07260 PF02634 FdhD/NarQ family RC54_RS07270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS07270 PF03466 LysR substrate binding domain RC54_RS07275 PF03992 Antibiotic biosynthesis monooxygenase RC54_RS07295 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07300 PF00005 ABC transporter RC54_RS07320 PF07715 TonB-dependent Receptor Plug Domain RC54_RS07320 PF00593 TonB dependent receptor RC54_RS07325 PF00356 Bacterial regulatory proteins, lacI family RC54_RS07330 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS07335 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07340 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07345 PF00005 ABC transporter RC54_RS07355 PF00294 pfkB family carbohydrate kinase RC54_RS07360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC54_RS07360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS07365 PF01012 Electron transfer flavoprotein domain RC54_RS07370 PF01012 Electron transfer flavoprotein domain RC54_RS07370 PF00766 Electron transfer flavoprotein FAD-binding domain RC54_RS07375 PF12806 Acetyl-CoA dehydrogenase C-terminal like RC54_RS07375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS07375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS07375 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS07385 PF00886 Ribosomal protein S16 RC54_RS07390 PF01782 RimM N-terminal domain RC54_RS07390 PF05239 PRC-barrel domain RC54_RS07395 PF01746 tRNA (Guanine-1)-methyltransferase RC54_RS07400 PF01245 Ribosomal protein L19 RC54_RS07405 PF00293 NUDIX domain RC54_RS07410 PF03186 CobD/Cbib protein RC54_RS07410 PF17113 Regulatory signalling modulator protein AmpE RC54_RS07420 PF10415 Fumarase C C-terminus RC54_RS07420 PF00206 Lyase RC54_RS07435 PF00579 tRNA synthetases class I (W and Y) RC54_RS07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS07440 PF00672 HAMP domain RC54_RS07440 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS07445 PF00072 Response regulator receiver domain RC54_RS07445 PF00486 Transcriptional regulatory protein, C terminal RC54_RS07455 PF13533 Biotin-lipoyl like RC54_RS07460 PF00873 AcrB/AcrD/AcrF family RC54_RS07465 PF00873 AcrB/AcrD/AcrF family RC54_RS07470 PF02321 Outer membrane efflux protein RC54_RS07475 PF04715 Anthranilate synthase component I, N terminal region RC54_RS07475 PF00425 chorismate binding enzyme RC54_RS07475 PF00117 Glutamine amidotransferase class-I RC54_RS07480 PF07690 Major Facilitator Superfamily RC54_RS07485 PF00892 EamA-like transporter family RC54_RS07490 PF01544 CorA-like Mg2+ transporter protein RC54_RS07495 PF07715 TonB-dependent Receptor Plug Domain RC54_RS07495 PF00593 TonB dependent receptor RC54_RS07505 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07510 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS07510 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS07515 PF00005 ABC transporter RC54_RS07525 PF01590 GAF domain RC54_RS07525 PF00563 EAL domain RC54_RS07525 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS07525 PF00360 Phytochrome region RC54_RS07530 PF04357 TamB, inner membrane protein subunit of TAM complex RC54_RS07540 PF00970 Oxidoreductase FAD-binding domain RC54_RS07540 PF00175 Oxidoreductase NAD-binding domain RC54_RS07555 PF01177 Asp/Glu/Hydantoin racemase RC54_RS07565 PF03350 Uncharacterized protein family, UPF0114 RC54_RS07570 PF16177 Acetyl-coenzyme A synthetase N-terminus RC54_RS07570 PF00501 AMP-binding enzyme RC54_RS07570 PF13193 AMP-binding enzyme C-terminal domain RC54_RS07585 PF09456 RcsC Alpha-Beta-Loop (ABL) RC54_RS07585 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS07585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS07585 PF00072 Response regulator receiver domain RC54_RS07590 PF00196 Bacterial regulatory proteins, luxR family RC54_RS07590 PF00072 Response regulator receiver domain RC54_RS07600 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RC54_RS07600 PF02753 Pili assembly chaperone PapD, C-terminal domain RC54_RS07605 PF00577 Outer membrane usher protein RC54_RS07605 PF13954 PapC N-terminal domain RC54_RS07605 PF13953 PapC C-terminal domain RC54_RS07610 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RC54_RS07610 PF02753 Pili assembly chaperone PapD, C-terminal domain RC54_RS07645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS07675 PF01494 FAD binding domain RC54_RS07680 PF00563 EAL domain RC54_RS07680 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS07680 PF03707 Bacterial signalling protein N terminal repeat RC54_RS07700 PF00072 Response regulator receiver domain RC54_RS07715 PF02203 Tar ligand binding domain homologue RC54_RS07715 PF00672 HAMP domain RC54_RS07715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS07735 PF03180 NLPA lipoprotein RC54_RS07740 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07745 PF09383 NIL domain RC54_RS07745 PF00005 ABC transporter RC54_RS07750 PF00266 Aminotransferase class-V RC54_RS07755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS07755 PF03466 LysR substrate binding domain RC54_RS07760 PF13454 FAD-NAD(P)-binding RC54_RS07765 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07770 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS07770 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS07775 PF00005 ABC transporter RC54_RS07775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS07780 PF00005 ABC transporter RC54_RS07780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS07785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS07805 PF01597 Glycine cleavage H-protein RC54_RS07810 PF00296 Luciferase-like monooxygenase RC54_RS07815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS07815 PF03466 LysR substrate binding domain RC54_RS07825 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS07835 PF00654 Voltage gated chloride channel RC54_RS07840 PF09084 NMT1/THI5 like RC54_RS07855 PF04185 Phosphoesterase family RC54_RS07855 PF05506 Domain of unknown function (DUF756) RC54_RS07870 PF00551 Formyl transferase RC54_RS07875 PF13193 AMP-binding enzyme C-terminal domain RC54_RS07875 PF00501 AMP-binding enzyme RC54_RS07885 PF07732 Multicopper oxidase RC54_RS07885 PF07731 Multicopper oxidase RC54_RS07885 PF00394 Multicopper oxidase RC54_RS07885 PF10518 TAT (twin-arginine translocation) pathway signal sequence RC54_RS07900 PF00403 Heavy-metal-associated domain RC54_RS07905 PF13411 MerR HTH family regulatory protein RC54_RS07910 PF00561 alpha/beta hydrolase fold RC54_RS07915 PF09278 MerR, DNA binding RC54_RS07915 PF00376 MerR family regulatory protein RC54_RS07920 PF00403 Heavy-metal-associated domain RC54_RS07940 PF17862 AAA+ lid domain RC54_RS07940 PF01434 Peptidase family M41 RC54_RS07940 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS07950 PF00034 Cytochrome c RC54_RS07955 PF00034 Cytochrome c RC54_RS07965 PF13458 Periplasmic binding protein RC54_RS07970 PF00730 HhH-GPD superfamily base excision DNA repair protein RC54_RS07970 PF10576 Iron-sulfur binding domain of endonuclease III RC54_RS07970 PF00633 Helix-hairpin-helix motif RC54_RS07975 PF04060 Putative Fe-S cluster RC54_RS07990 PF11953 Domain of unknown function (DUF3470) RC54_RS07990 PF00037 4Fe-4S binding domain RC54_RS08000 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RC54_RS08000 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RC54_RS08010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS08010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC54_RS08020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RC54_RS08055 PF00850 Histone deacetylase domain RC54_RS08070 PF08241 Methyltransferase domain RC54_RS08075 PF00768 D-alanyl-D-alanine carboxypeptidase RC54_RS08095 PF03358 NADPH-dependent FMN reductase RC54_RS08100 PF09084 NMT1/THI5 like RC54_RS08105 PF00296 Luciferase-like monooxygenase RC54_RS08110 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS08115 PF00005 ABC transporter RC54_RS08120 PF03459 TOBE domain RC54_RS08135 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS08140 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS08145 PF17850 CysA C-terminal regulatory domain RC54_RS08145 PF00005 ABC transporter RC54_RS08145 PF12857 TOBE-like domain RC54_RS08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS08150 PF03466 LysR substrate binding domain RC54_RS08175 PF13458 Periplasmic binding protein RC54_RS08180 PF02653 Branched-chain amino acid transport system / permease component RC54_RS08185 PF02653 Branched-chain amino acid transport system / permease component RC54_RS08185 PF11862 Domain of unknown function (DUF3382) RC54_RS08190 PF00005 ABC transporter RC54_RS08190 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS08195 PF00005 ABC transporter RC54_RS08200 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS08205 PF07690 Major Facilitator Superfamily RC54_RS08215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RC54_RS08220 PF01037 Lrp/AsnC ligand binding domain RC54_RS08225 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RC54_RS08225 PF12833 Helix-turn-helix domain RC54_RS08225 PF02805 Metal binding domain of Ada RC54_RS08225 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RC54_RS08230 PF13532 2OG-Fe(II) oxygenase superfamily RC54_RS08235 PF13018 Extended Signal Peptide of Type V secretion system RC54_RS08235 PF04829 Pre-toxin domain with VENN motif RC54_RS08235 PF05860 haemagglutination activity domain RC54_RS08235 PF13332 Hemagglutinin repeat RC54_RS08250 PF02203 Tar ligand binding domain homologue RC54_RS08250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS08250 PF00672 HAMP domain RC54_RS08255 PF01266 FAD dependent oxidoreductase RC54_RS08260 PF01037 Lrp/AsnC ligand binding domain RC54_RS08265 PF00384 Molybdopterin oxidoreductase RC54_RS08275 PF00155 Aminotransferase class I and II RC54_RS08275 PF00392 Bacterial regulatory proteins, gntR family RC54_RS08300 PF02424 ApbE family RC54_RS08305 PF00258 Flavodoxin RC54_RS08305 PF00667 FAD binding domain RC54_RS08305 PF00175 Oxidoreductase NAD-binding domain RC54_RS08310 PF01595 Cyclin M transmembrane N-terminal domain RC54_RS08310 PF03471 Transporter associated domain RC54_RS08310 PF00571 CBS domain RC54_RS08325 PF07690 Major Facilitator Superfamily RC54_RS08335 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS08340 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RC54_RS08345 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS08350 PF00005 ABC transporter RC54_RS08350 PF00571 CBS domain RC54_RS08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS08355 PF03466 LysR substrate binding domain RC54_RS08360 PF00491 Arginase family RC54_RS08370 PF00271 Helicase conserved C-terminal domain RC54_RS08370 PF00270 DEAD/DEAH box helicase RC54_RS08375 PF00561 alpha/beta hydrolase fold RC54_RS08385 PF00459 Inositol monophosphatase family RC54_RS08395 PF00588 SpoU rRNA Methylase family RC54_RS08400 PF01479 S4 domain RC54_RS08400 PF00849 RNA pseudouridylate synthase RC54_RS08410 PF01430 Hsp33 protein RC54_RS08415 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS08420 PF04305 Protein of unknown function (DUF455) RC54_RS08430 PF01674 Lipase (class 2) RC54_RS08455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RC54_RS08455 PF00205 Thiamine pyrophosphate enzyme, central domain RC54_RS08455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC54_RS08460 PF10369 Small subunit of acetolactate synthase RC54_RS08465 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RC54_RS08465 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RC54_RS08480 PF02666 Phosphatidylserine decarboxylase RC54_RS08485 PF01066 CDP-alcohol phosphatidyltransferase RC54_RS08495 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS08505 PF00392 Bacterial regulatory proteins, gntR family RC54_RS08505 PF00155 Aminotransferase class I and II RC54_RS08515 PF00294 pfkB family carbohydrate kinase RC54_RS08515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RC54_RS08530 PF07969 Amidohydrolase family RC54_RS08535 PF01042 Endoribonuclease L-PSP RC54_RS08540 PF02447 GntP family permease RC54_RS08550 PF00312 Ribosomal protein S15 RC54_RS08555 PF03725 3' exoribonuclease family, domain 2 RC54_RS08555 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RC54_RS08555 PF00575 S1 RNA binding domain RC54_RS08555 PF01138 3' exoribonuclease family, domain 1 RC54_RS08555 PF00013 KH domain RC54_RS08560 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS08580 PF03746 LamB/YcsF family RC54_RS08585 PF02626 Carboxyltransferase domain, subdomain A and B RC54_RS08590 PF02682 Carboxyltransferase domain, subdomain C and D RC54_RS08600 PF14765 Polyketide synthase dehydratase RC54_RS08600 PF00698 Acyl transferase domain RC54_RS08600 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS08600 PF16197 Ketoacyl-synthetase C-terminal extension RC54_RS08600 PF02801 Beta-ketoacyl synthase, C-terminal domain RC54_RS08600 PF00109 Beta-ketoacyl synthase, N-terminal domain RC54_RS08600 PF00550 Phosphopantetheine attachment site RC54_RS08600 PF08659 KR domain RC54_RS08605 PF00121 Triosephosphate isomerase RC54_RS08610 PF03840 Preprotein translocase SecG subunit RC54_RS08620 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RC54_RS08625 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RC54_RS08630 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RC54_RS08635 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RC54_RS08645 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RC54_RS08645 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RC54_RS08645 PF10531 SLBB domain RC54_RS08650 PF00384 Molybdopterin oxidoreductase RC54_RS08650 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RC54_RS08650 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RC54_RS08655 PF00146 NADH dehydrogenase RC54_RS08660 PF12838 4Fe-4S dicluster domain RC54_RS08665 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RC54_RS08670 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RC54_RS08675 PF00361 Proton-conducting membrane transporter RC54_RS08675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RC54_RS08680 PF00361 Proton-conducting membrane transporter RC54_RS08680 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RC54_RS08685 PF00361 Proton-conducting membrane transporter RC54_RS08695 PF00293 NUDIX domain RC54_RS08720 PF00005 ABC transporter RC54_RS08720 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS08725 PF00005 ABC transporter RC54_RS08730 PF12146 Serine aminopeptidase, S33 RC54_RS08755 PF05175 Methyltransferase small domain RC54_RS08760 PF03180 NLPA lipoprotein RC54_RS08770 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RC54_RS08800 PF00183 Hsp90 protein RC54_RS08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS08815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS08815 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS08825 PF03412 Peptidase C39 family RC54_RS08825 PF00005 ABC transporter RC54_RS08825 PF00664 ABC transporter transmembrane region RC54_RS08835 PF00392 Bacterial regulatory proteins, gntR family RC54_RS08835 PF00155 Aminotransferase class I and II RC54_RS08840 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS08850 PF00892 EamA-like transporter family RC54_RS08860 PF00155 Aminotransferase class I and II RC54_RS08875 PF14552 Tautomerase enzyme RC54_RS08880 PF03466 LysR substrate binding domain RC54_RS08880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS08885 PF00011 Hsp20/alpha crystallin family RC54_RS08895 PF02321 Outer membrane efflux protein RC54_RS08895 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RC54_RS08900 PF13533 Biotin-lipoyl like RC54_RS08905 PF00005 ABC transporter RC54_RS08915 PF00521 DNA gyrase/topoisomerase IV, subunit A RC54_RS08920 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RC54_RS08920 PF01464 Transglycosylase SLT domain RC54_RS08925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS08925 PF01751 Toprim domain RC54_RS08925 PF00986 DNA gyrase B subunit, carboxyl terminus RC54_RS08925 PF00204 DNA gyrase B RC54_RS08930 PF01425 Amidase RC54_RS08940 PF07690 Major Facilitator Superfamily RC54_RS08945 PF03466 LysR substrate binding domain RC54_RS08945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS08955 PF01112 Asparaginase RC54_RS08960 PF00005 ABC transporter RC54_RS08960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS08965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS08970 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS08975 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS08975 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS08980 PF03576 Peptidase family S58 RC54_RS08990 PF08546 Ketopantoate reductase PanE/ApbA C terminal RC54_RS08990 PF02558 Ketopantoate reductase PanE/ApbA RC54_RS08995 PF00392 Bacterial regulatory proteins, gntR family RC54_RS08995 PF07729 FCD domain RC54_RS09005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS09005 PF00005 ABC transporter RC54_RS09010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS09010 PF00005 ABC transporter RC54_RS09015 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS09015 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS09020 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS09025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS09030 PF01047 MarR family RC54_RS09035 PF07859 alpha/beta hydrolase fold RC54_RS09040 PF02230 Phospholipase/Carboxylesterase RC54_RS09050 PF00994 Probable molybdopterin binding domain RC54_RS09055 PF04751 Protein of unknown function (DUF615) RC54_RS09060 PF01523 Putative modulator of DNA gyrase RC54_RS09065 PF07690 Major Facilitator Superfamily RC54_RS09075 PF00875 DNA photolyase RC54_RS09075 PF03441 FAD binding domain of DNA photolyase RC54_RS09080 PF02203 Tar ligand binding domain homologue RC54_RS09080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS09080 PF00672 HAMP domain RC54_RS09090 PF00575 S1 RNA binding domain RC54_RS09090 PF00773 RNB domain RC54_RS09090 PF08206 Ribonuclease B OB domain RC54_RS09090 PF08461 Ribonuclease R winged-helix domain RC54_RS09090 PF17876 Cold shock domain RC54_RS09095 PF08032 RNA 2'-O ribose methyltransferase substrate binding RC54_RS09095 PF00588 SpoU rRNA Methylase family RC54_RS09100 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS09105 PF00149 Calcineurin-like phosphoesterase RC54_RS09110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RC54_RS09115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RC54_RS09130 PF01406 tRNA synthetases class I (C) catalytic domain RC54_RS09130 PF09190 DALR domain RC54_RS09140 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RC54_RS09145 PF11734 TilS substrate C-terminal domain RC54_RS09145 PF01171 PP-loop family RC54_RS09145 PF09179 TilS substrate binding domain RC54_RS09160 PF01810 LysE type translocator RC54_RS09195 PF02646 RmuC family RC54_RS09200 PF03453 MoeA N-terminal region (domain I and II) RC54_RS09200 PF03454 MoeA C-terminal region (domain IV) RC54_RS09200 PF00994 Probable molybdopterin binding domain RC54_RS09205 PF12804 MobA-like NTP transferase domain RC54_RS09210 PF06463 Molybdenum Cofactor Synthesis C RC54_RS09210 PF04055 Radical SAM superfamily RC54_RS09215 PF12111 Polyribonucleotide phosphorylase C terminal RC54_RS09215 PF10150 Ribonuclease E/G family RC54_RS09215 PF00575 S1 RNA binding domain RC54_RS09220 PF00849 RNA pseudouridylate synthase RC54_RS09220 PF01479 S4 domain RC54_RS09225 PF13419 Haloacid dehalogenase-like hydrolase RC54_RS09235 PF06965 Na+/H+ antiporter 1 RC54_RS09235 PF01343 Peptidase family S49 RC54_RS09240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC54_RS09245 PF02541 Ppx/GppA phosphatase family RC54_RS09250 PF13416 Bacterial extracellular solute-binding protein RC54_RS09260 PF00795 Carbon-nitrogen hydrolase RC54_RS09260 PF02540 NAD synthase RC54_RS09265 PF00543 Nitrogen regulatory protein P-II RC54_RS09270 PF00171 Aldehyde dehydrogenase family RC54_RS09280 PF00158 Sigma-54 interaction domain RC54_RS09280 PF01590 GAF domain RC54_RS09280 PF02954 Bacterial regulatory protein, Fis family RC54_RS09295 PF01713 Smr domain RC54_RS09305 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS09310 PF09397 Ftsk gamma domain RC54_RS09310 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RC54_RS09310 PF01580 FtsK/SpoIIIE family RC54_RS09310 PF17854 FtsK alpha domain RC54_RS09315 PF03548 Outer membrane lipoprotein carrier protein LolA RC54_RS09320 PF11953 Domain of unknown function (DUF3470) RC54_RS09320 PF00037 4Fe-4S binding domain RC54_RS09325 PF16193 AAA C-terminal domain RC54_RS09325 PF12002 MgsA AAA+ ATPase C terminal RC54_RS09325 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS09350 PF03466 LysR substrate binding domain RC54_RS09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS09360 PF02403 Seryl-tRNA synthetase N-terminal domain RC54_RS09360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC54_RS09365 PF00563 EAL domain RC54_RS09365 PF03707 Bacterial signalling protein N terminal repeat RC54_RS09365 PF13188 PAS domain RC54_RS09365 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS09375 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS09380 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RC54_RS09380 PF00356 Bacterial regulatory proteins, lacI family RC54_RS09400 PF02545 Maf-like protein RC54_RS09410 PF01783 Ribosomal L32p protein family RC54_RS09415 PF02504 Fatty acid synthesis protein RC54_RS09420 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RC54_RS09420 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RC54_RS09425 PF00698 Acyl transferase domain RC54_RS09435 PF00550 Phosphopantetheine attachment site RC54_RS09440 PF00109 Beta-ketoacyl synthase, N-terminal domain RC54_RS09440 PF02801 Beta-ketoacyl synthase, C-terminal domain RC54_RS09450 PF04542 Sigma-70 region 2 RC54_RS09450 PF08281 Sigma-70, region 4 RC54_RS09465 PF17820 PDZ domain RC54_RS09465 PF13180 PDZ domain RC54_RS09475 PF00679 Elongation factor G C-terminus RC54_RS09475 PF00009 Elongation factor Tu GTP binding domain RC54_RS09475 PF03144 Elongation factor Tu domain 2 RC54_RS09475 PF06421 GTP-binding protein LepA C-terminus RC54_RS09480 PF10502 Signal peptidase, peptidase S26 RC54_RS09485 PF14622 Ribonuclease-III-like RC54_RS09485 PF00035 Double-stranded RNA binding motif RC54_RS09490 PF01926 50S ribosome-binding GTPase RC54_RS09490 PF07650 KH domain RC54_RS09495 PF11967 Recombination protein O N terminal RC54_RS09495 PF02565 Recombination protein O C terminal RC54_RS09500 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RC54_RS09505 PF01648 4'-phosphopantetheinyl transferase superfamily RC54_RS09510 PF00933 Glycosyl hydrolase family 3 N terminal domain RC54_RS09515 PF08459 UvrC Helix-hairpin-helix N-terminal RC54_RS09515 PF02151 UvrB/uvrC motif RC54_RS09515 PF01541 GIY-YIG catalytic domain RC54_RS09520 PF01066 CDP-alcohol phosphatidyltransferase RC54_RS09550 PF00072 Response regulator receiver domain RC54_RS09550 PF01584 CheW-like domain RC54_RS09555 PF02277 Phosphoribosyltransferase RC54_RS09560 PF02654 Cobalamin-5-phosphate synthase RC54_RS09565 PF00300 Histidine phosphatase superfamily (branch 1) RC54_RS09585 PF04328 Selenoprotein, putative RC54_RS09600 PF00563 EAL domain RC54_RS09600 PF01590 GAF domain RC54_RS09600 PF00360 Phytochrome region RC54_RS09600 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS09610 PF01435 Peptidase family M48 RC54_RS09615 PF02254 TrkA-N domain RC54_RS09615 PF00999 Sodium/hydrogen exchanger family RC54_RS09620 PF00885 6,7-dimethyl-8-ribityllumazine synthase RC54_RS09645 PF00145 C-5 cytosine-specific DNA methylase RC54_RS09650 PF01381 Helix-turn-helix RC54_RS09665 PF01042 Endoribonuclease L-PSP RC54_RS09670 PF02824 TGS domain RC54_RS09670 PF04607 Region found in RelA / SpoT proteins RC54_RS09670 PF13291 ACT domain RC54_RS09685 PF00072 Response regulator receiver domain RC54_RS09695 PF03129 Anticodon binding domain RC54_RS09695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RC54_RS09695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RC54_RS09695 PF02824 TGS domain RC54_RS09700 PF00707 Translation initiation factor IF-3, C-terminal domain RC54_RS09700 PF05198 Translation initiation factor IF-3, N-terminal domain RC54_RS09705 PF01632 Ribosomal protein L35 RC54_RS09710 PF00453 Ribosomal protein L20 RC54_RS09715 PF01409 tRNA synthetases class II core domain (F) RC54_RS09715 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RC54_RS09720 PF03484 tRNA synthetase B5 domain RC54_RS09720 PF01588 Putative tRNA binding domain RC54_RS09720 PF03147 Ferredoxin-fold anticodon binding domain RC54_RS09720 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RC54_RS09720 PF03483 B3/4 domain RC54_RS09725 PF00216 Bacterial DNA-binding protein RC54_RS09755 PF02397 Bacterial sugar transferase RC54_RS09775 PF13614 AAA domain RC54_RS09780 PF09721 Transmembrane exosortase (Exosortase_EpsH) RC54_RS09790 PF00534 Glycosyl transferases group 1 RC54_RS09790 PF13439 Glycosyltransferase Family 4 RC54_RS09795 PF01757 Acyltransferase family RC54_RS09800 PF01757 Acyltransferase family RC54_RS09820 PF00483 Nucleotidyl transferase RC54_RS09825 PF01050 Mannose-6-phosphate isomerase RC54_RS09825 PF00483 Nucleotidyl transferase RC54_RS09845 PF00793 DAHP synthetase I family RC54_RS09850 PF01380 SIS domain RC54_RS09850 PF00571 CBS domain RC54_RS09855 PF02348 Cytidylyltransferase RC54_RS09860 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS09860 PF06426 Serine acetyltransferase, N-terminal RC54_RS09865 PF01548 Transposase RC54_RS09865 PF02371 Transposase IS116/IS110/IS902 family RC54_RS09875 PF02595 Glycerate kinase family RC54_RS09910 PF01545 Cation efflux family RC54_RS09910 PF16916 Dimerisation domain of Zinc Transporter RC54_RS09915 PF02583 Metal-sensitive transcriptional repressor RC54_RS09920 PF08447 PAS fold RC54_RS09920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS09920 PF13426 PAS domain RC54_RS09925 PF01739 CheR methyltransferase, SAM binding domain RC54_RS09925 PF03705 CheR methyltransferase, all-alpha domain RC54_RS09930 PF03975 CheD chemotactic sensory transduction RC54_RS09935 PF00072 Response regulator receiver domain RC54_RS09935 PF01339 CheB methylesterase RC54_RS09940 PF00072 Response regulator receiver domain RC54_RS09945 PF04344 Chemotaxis phosphatase, CheZ RC54_RS09950 PF01312 FlhB HrpN YscU SpaS Family RC54_RS09955 PF00771 FHIPEP family RC54_RS09960 PF00448 SRP54-type protein, GTPase domain RC54_RS09970 PF04539 Sigma-70 region 3 RC54_RS09970 PF04545 Sigma-70, region 4 RC54_RS09970 PF04542 Sigma-70 region 2 RC54_RS09990 PF00460 Flagella basal body rod protein RC54_RS09995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC54_RS09995 PF00460 Flagella basal body rod protein RC54_RS10000 PF03963 Flagellar hook capping protein - N-terminal region RC54_RS10000 PF13861 FlgD Tudor-like domain RC54_RS10000 PF13860 FlgD Ig-like domain RC54_RS10005 PF07559 Flagellar basal body protein FlaE RC54_RS10005 PF00460 Flagella basal body rod protein RC54_RS10005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC54_RS10010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC54_RS10010 PF00460 Flagella basal body rod protein RC54_RS10015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC54_RS10015 PF00460 Flagella basal body rod protein RC54_RS10020 PF02107 Flagellar L-ring protein RC54_RS10025 PF02119 Flagellar P-ring protein RC54_RS10030 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RC54_RS10030 PF10135 Rod binding protein RC54_RS10035 PF00460 Flagella basal body rod protein RC54_RS10035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RC54_RS10040 PF00669 Bacterial flagellin N-terminal helical region RC54_RS10045 PF01311 Bacterial export proteins, family 1 RC54_RS10050 PF01313 Bacterial export proteins, family 3 RC54_RS10055 PF00813 FliP family RC54_RS10060 PF04347 Flagellar biosynthesis protein, FliO RC54_RS10065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC54_RS10065 PF16973 Flagellar motor switch protein FliN N-terminal RC54_RS10070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC54_RS10070 PF02154 Flagellar motor switch protein FliM RC54_RS10075 PF03748 Flagellar basal body-associated protein FliL RC54_RS10090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC54_RS10090 PF18269 T3SS EscN ATPase C-terminal domain RC54_RS10100 PF01706 FliG C-terminal domain RC54_RS10100 PF14841 FliG middle domain RC54_RS10100 PF14842 FliG N-terminal domain RC54_RS10105 PF01514 Secretory protein of YscJ/FliF family RC54_RS10105 PF08345 Flagellar M-ring protein C-terminal RC54_RS10110 PF02049 Flagellar hook-basal body complex protein FliE RC54_RS10115 PF07317 Flagellar regulator YcgR RC54_RS10115 PF07238 PilZ domain RC54_RS10120 PF01312 FlhB HrpN YscU SpaS Family RC54_RS10135 PF02561 Flagellar protein FliS RC54_RS10140 PF02465 Flagellar hook-associated protein 2 N-terminus RC54_RS10140 PF07196 Flagellin hook IN motif RC54_RS10140 PF07195 Flagellar hook-associated protein 2 C-terminus RC54_RS10150 PF00700 Bacterial flagellin C-terminal helical region RC54_RS10150 PF07196 Flagellin hook IN motif RC54_RS10150 PF00669 Bacterial flagellin N-terminal helical region RC54_RS10160 PF00717 Peptidase S24-like RC54_RS10160 PF01726 LexA DNA binding domain RC54_RS10165 PF01250 Ribosomal protein S6 RC54_RS10175 PF01084 Ribosomal protein S18 RC54_RS10180 PF01281 Ribosomal protein L9, N-terminal domain RC54_RS10180 PF03948 Ribosomal protein L9, C-terminal domain RC54_RS10185 PF03796 DnaB-like helicase C terminal domain RC54_RS10185 PF00772 DnaB-like helicase N terminal domain RC54_RS10195 PF01384 Phosphate transporter family RC54_RS10200 PF02562 PhoH-like protein RC54_RS10200 PF13638 PIN domain RC54_RS10205 PF00578 AhpC/TSA family RC54_RS10210 PF01522 Polysaccharide deacetylase RC54_RS10215 PF01370 NAD dependent epimerase/dehydratase family RC54_RS10215 PF02911 Formyl transferase, C-terminal domain RC54_RS10215 PF00551 Formyl transferase RC54_RS10220 PF02911 Formyl transferase, C-terminal domain RC54_RS10220 PF01370 NAD dependent epimerase/dehydratase family RC54_RS10220 PF00551 Formyl transferase RC54_RS10225 PF00535 Glycosyl transferase family 2 RC54_RS10230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC54_RS10240 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RC54_RS10245 PF04430 Protein of unknown function (DUF498/DUF598) RC54_RS10250 PF00155 Aminotransferase class I and II RC54_RS10255 PF01842 ACT domain RC54_RS10255 PF03447 Homoserine dehydrogenase, NAD binding domain RC54_RS10255 PF00742 Homoserine dehydrogenase RC54_RS10265 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS10265 PF14821 Threonine synthase N terminus RC54_RS10270 PF00994 Probable molybdopterin binding domain RC54_RS10270 PF03454 MoeA C-terminal region (domain IV) RC54_RS10270 PF03453 MoeA N-terminal region (domain I and II) RC54_RS10280 PF02597 ThiS family RC54_RS10290 PF02447 GntP family permease RC54_RS10295 PF02391 MoaE protein RC54_RS10300 PF01566 Natural resistance-associated macrophage protein RC54_RS10315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS10315 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS10325 PF04632 Fusaric acid resistance protein family RC54_RS10330 PF02321 Outer membrane efflux protein RC54_RS10335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS10335 PF03466 LysR substrate binding domain RC54_RS10340 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RC54_RS10345 PF02861 Clp amino terminal domain, pathogenicity island component RC54_RS10345 PF17871 AAA lid domain RC54_RS10345 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS10345 PF10431 C-terminal, D2-small domain, of ClpB protein RC54_RS10345 PF07724 AAA domain (Cdc48 subfamily) RC54_RS10350 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS10350 PF00563 EAL domain RC54_RS10350 PF03707 Bacterial signalling protein N terminal repeat RC54_RS10355 PF03737 Aldolase/RraA RC54_RS10360 PF12805 FUSC-like inner membrane protein yccS RC54_RS10365 PF00463 Isocitrate lyase family RC54_RS10370 PF00005 ABC transporter RC54_RS10370 PF12857 TOBE-like domain RC54_RS10375 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS10390 PF00654 Voltage gated chloride channel RC54_RS10395 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RC54_RS10400 PF08668 HDOD domain RC54_RS10400 PF00563 EAL domain RC54_RS10410 PF02142 MGS-like domain RC54_RS10415 PF03449 Transcription elongation factor, N-terminal RC54_RS10415 PF01272 Transcription elongation factor, GreA/GreB, C-term RC54_RS10425 PF02525 Flavodoxin-like fold RC54_RS10430 PF03466 LysR substrate binding domain RC54_RS10430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS10435 PF13291 ACT domain RC54_RS10435 PF02824 TGS domain RC54_RS10435 PF04607 Region found in RelA / SpoT proteins RC54_RS10440 PF01192 RNA polymerase Rpb6 RC54_RS10445 PF00625 Guanylate kinase RC54_RS10450 PF03755 YicC-like family, N-terminal region RC54_RS10450 PF08340 Domain of unknown function (DUF1732) RC54_RS10455 PF03725 3' exoribonuclease family, domain 2 RC54_RS10455 PF01138 3' exoribonuclease family, domain 1 RC54_RS10460 PF01725 Ham1 family RC54_RS10465 PF04055 Radical SAM superfamily RC54_RS10465 PF06969 HemN C-terminal domain RC54_RS10475 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS10475 PF03707 Bacterial signalling protein N terminal repeat RC54_RS10475 PF00563 EAL domain RC54_RS10480 PF00080 Copper/zinc superoxide dismutase (SODC) RC54_RS10485 PF01381 Helix-turn-helix RC54_RS10520 PF02195 ParB-like nuclease domain RC54_RS10520 PF17762 HTH domain found in ParB protein RC54_RS10600 PF02413 Caudovirales tail fibre assembly protein, lambda gpK RC54_RS10615 PF01343 Peptidase family S49 RC54_RS10645 PF04984 Phage tail sheath protein subtilisin-like domain RC54_RS10645 PF17482 Phage tail sheath C-terminal domain RC54_RS10675 PF06890 Bacteriophage Mu Gp45 protein RC54_RS10690 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) RC54_RS10735 PF00589 Phage integrase family RC54_RS10735 PF14659 Phage integrase, N-terminal SAM-like domain RC54_RS10735 PF13356 Arm DNA-binding domain RC54_RS10745 PF01842 ACT domain RC54_RS10745 PF13840 ACT domain RC54_RS10745 PF00696 Amino acid kinase family RC54_RS10755 PF03466 LysR substrate binding domain RC54_RS10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS10765 PF00814 Glycoprotease family RC54_RS10770 PF00583 Acetyltransferase (GNAT) family RC54_RS10775 PF03167 Uracil DNA glycosylase superfamily RC54_RS10785 PF07690 Major Facilitator Superfamily RC54_RS10790 PF00842 Alanine racemase, C-terminal domain RC54_RS10790 PF01168 Alanine racemase, N-terminal domain RC54_RS10795 PF18073 Rubredoxin metal binding domain RC54_RS10805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS10805 PF00672 HAMP domain RC54_RS10805 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS10810 PF00486 Transcriptional regulatory protein, C terminal RC54_RS10810 PF00072 Response regulator receiver domain RC54_RS10820 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS10825 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS10830 PF00005 ABC transporter RC54_RS10830 PF12848 ABC transporter RC54_RS10835 PF05175 Methyltransferase small domain RC54_RS10840 PF07687 Peptidase dimerisation domain RC54_RS10840 PF01546 Peptidase family M20/M25/M40 RC54_RS10845 PF03960 ArsC family RC54_RS10850 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS10850 PF14602 Hexapeptide repeat of succinyl-transferase RC54_RS10850 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RC54_RS10855 PF00155 Aminotransferase class I and II RC54_RS10860 PF02203 Tar ligand binding domain homologue RC54_RS10860 PF00672 HAMP domain RC54_RS10860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS10865 PF02463 RecF/RecN/SMC N terminal domain RC54_RS10865 PF06470 SMC proteins Flexible Hinge Domain RC54_RS10875 PF00533 BRCA1 C Terminus (BRCT) domain RC54_RS10875 PF03120 NAD-dependent DNA ligase OB-fold domain RC54_RS10875 PF01653 NAD-dependent DNA ligase adenylation domain RC54_RS10875 PF12826 Helix-hairpin-helix motif RC54_RS10875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RC54_RS10880 PF00483 Nucleotidyl transferase RC54_RS10885 PF01327 Polypeptide deformylase RC54_RS10890 PF02875 Mur ligase family, glutamate ligase domain RC54_RS10890 PF08245 Mur ligase middle domain RC54_RS10890 PF08443 RimK-like ATP-grasp domain RC54_RS10895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC54_RS10895 PF08245 Mur ligase middle domain RC54_RS10895 PF02875 Mur ligase family, glutamate ligase domain RC54_RS10900 PF00005 ABC transporter RC54_RS10900 PF00664 ABC transporter transmembrane region RC54_RS10915 PF00849 RNA pseudouridylate synthase RC54_RS10915 PF01479 S4 domain RC54_RS10920 PF08335 GlnD PII-uridylyltransferase RC54_RS10920 PF01909 Nucleotidyltransferase domain RC54_RS10920 PF01966 HD domain RC54_RS10925 PF00557 Metallopeptidase family M24 RC54_RS10930 PF00318 Ribosomal protein S2 RC54_RS10935 PF00889 Elongation factor TS RC54_RS10940 PF00696 Amino acid kinase family RC54_RS10945 PF01765 Ribosome recycling factor RC54_RS10950 PF01255 Putative undecaprenyl diphosphate synthase RC54_RS10960 PF13288 DXP reductoisomerase C-terminal domain RC54_RS10960 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RC54_RS10960 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RC54_RS10965 PF02163 Peptidase family M50 RC54_RS10965 PF17820 PDZ domain RC54_RS10970 PF07244 Surface antigen variable number repeat RC54_RS10970 PF01103 Surface antigen RC54_RS10980 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS10980 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RC54_RS10985 PF07977 FabA-like domain RC54_RS10990 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RC54_RS10990 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS10995 PF02684 Lipid-A-disaccharide synthetase RC54_RS11000 PF01351 Ribonuclease HII RC54_RS11005 PF00588 SpoU rRNA Methylase family RC54_RS11005 PF08032 RNA 2'-O ribose methyltransferase substrate binding RC54_RS11015 PF03618 Kinase/pyrophosphorylase RC54_RS11025 PF00391 PEP-utilising enzyme, mobile domain RC54_RS11025 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RC54_RS11025 PF02896 PEP-utilising enzyme, TIM barrel domain RC54_RS11035 PF01145 SPFH domain / Band 7 family RC54_RS11045 PF00672 HAMP domain RC54_RS11045 PF16527 Two-component sensor protein CpxA, periplasmic domain RC54_RS11045 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS11045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11050 PF00072 Response regulator receiver domain RC54_RS11050 PF00486 Transcriptional regulatory protein, C terminal RC54_RS11060 PF01668 SmpB protein RC54_RS11065 PF03364 Polyketide cyclase / dehydrase and lipid transport RC54_RS11070 PF03658 RnfH family Ubiquitin RC54_RS11075 PF00571 CBS domain RC54_RS11075 PF00478 IMP dehydrogenase / GMP reductase domain RC54_RS11080 PF00958 GMP synthase C terminal domain RC54_RS11080 PF02540 NAD synthase RC54_RS11080 PF00117 Glutamine amidotransferase class-I RC54_RS11105 PF01242 6-pyruvoyl tetrahydropterin synthase RC54_RS11110 PF14437 MafB19-like deaminase RC54_RS11115 PF02016 LD-carboxypeptidase N-terminal domain RC54_RS11115 PF17676 LD-carboxypeptidase C-terminal domain RC54_RS11125 PF00005 ABC transporter RC54_RS11125 PF12848 ABC transporter RC54_RS11130 PF02445 Quinolinate synthetase A protein RC54_RS11135 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RC54_RS11135 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RC54_RS11140 PF01734 Patatin-like phospholipase RC54_RS11145 PF02910 Fumarate reductase flavoprotein C-term RC54_RS11145 PF00890 FAD binding domain RC54_RS11150 PF01370 NAD dependent epimerase/dehydratase family RC54_RS11150 PF02222 ATP-grasp domain RC54_RS11165 PF03600 Citrate transporter RC54_RS11170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS11170 PF03466 LysR substrate binding domain RC54_RS11175 PF08946 Osmosensory transporter coiled coil RC54_RS11175 PF00083 Sugar (and other) transporter RC54_RS11190 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS11195 PF00005 ABC transporter RC54_RS11195 PF08402 TOBE domain RC54_RS11205 PF05698 Bacterial trigger factor protein (TF) C-terminus RC54_RS11210 PF00958 GMP synthase C terminal domain RC54_RS11210 PF00117 Glutamine amidotransferase class-I RC54_RS11215 PF13472 GDSL-like Lipase/Acylhydrolase family RC54_RS11220 PF00005 ABC transporter RC54_RS11230 PF01256 Carbohydrate kinase RC54_RS11230 PF03853 YjeF-related protein N-terminus RC54_RS11235 PF01266 FAD dependent oxidoreductase RC54_RS11240 PF02769 AIR synthase related protein, C-terminal domain RC54_RS11240 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RC54_RS11240 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RC54_RS11245 PF13609 Gram-negative porin RC54_RS11260 PF04279 Intracellular septation protein A RC54_RS11265 PF01641 SelR domain RC54_RS11270 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RC54_RS11275 PF02653 Branched-chain amino acid transport system / permease component RC54_RS11285 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS11285 PF00005 ABC transporter RC54_RS11290 PF00005 ABC transporter RC54_RS11305 PF00535 Glycosyl transferase family 2 RC54_RS11320 PF07690 Major Facilitator Superfamily RC54_RS11330 PF00171 Aldehyde dehydrogenase family RC54_RS11335 PF00392 Bacterial regulatory proteins, gntR family RC54_RS11335 PF07729 FCD domain RC54_RS11345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS11345 PF03466 LysR substrate binding domain RC54_RS11350 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS11350 PF07694 5TMR of 5TMR-LYT RC54_RS11355 PF00342 Phosphoglucose isomerase RC54_RS11365 PF08446 PAS fold RC54_RS11365 PF00360 Phytochrome region RC54_RS11365 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS11365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11365 PF01590 GAF domain RC54_RS11370 PF00072 Response regulator receiver domain RC54_RS11375 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS11375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11380 PF00360 Phytochrome region RC54_RS11380 PF08446 PAS fold RC54_RS11380 PF01590 GAF domain RC54_RS11380 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11390 PF00072 Response regulator receiver domain RC54_RS11390 PF13426 PAS domain RC54_RS11400 PF00593 TonB dependent receptor RC54_RS11400 PF07715 TonB-dependent Receptor Plug Domain RC54_RS11420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS11425 PF00672 HAMP domain RC54_RS11425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11425 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS11430 PF00486 Transcriptional regulatory protein, C terminal RC54_RS11430 PF00072 Response regulator receiver domain RC54_RS11435 PF00873 AcrB/AcrD/AcrF family RC54_RS11440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS11445 PF02321 Outer membrane efflux protein RC54_RS11450 PF02515 CoA-transferase family III RC54_RS11455 PF10502 Signal peptidase, peptidase S26 RC54_RS11460 PF00440 Bacterial regulatory proteins, tetR family RC54_RS11460 PF16859 Tetracyclin repressor-like, C-terminal domain RC54_RS11475 PF13091 PLD-like domain RC54_RS11475 PF13396 Phospholipase_D-nuclease N-terminal RC54_RS11480 PF01584 CheW-like domain RC54_RS11480 PF02895 Signal transducing histidine kinase, homodimeric domain RC54_RS11480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11480 PF01627 Hpt domain RC54_RS11485 PF13426 PAS domain RC54_RS11485 PF08447 PAS fold RC54_RS11485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS11500 PF00072 Response regulator receiver domain RC54_RS11520 PF00654 Voltage gated chloride channel RC54_RS11525 PF15887 Putative zinc-binding metallo-peptidase RC54_RS11525 PF10005 zinc-ribbon domain RC54_RS11560 PF07690 Major Facilitator Superfamily RC54_RS11560 PF00083 Sugar (and other) transporter RC54_RS11565 PF06481 COX Aromatic Rich Motif RC54_RS11565 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RC54_RS11570 PF00115 Cytochrome C and Quinol oxidase polypeptide I RC54_RS11575 PF00510 Cytochrome c oxidase subunit III RC54_RS11580 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RC54_RS11590 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11595 PF00072 Response regulator receiver domain RC54_RS11600 PF13458 Periplasmic binding protein RC54_RS11610 PF00005 ABC transporter RC54_RS11610 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS11615 PF00005 ABC transporter RC54_RS11620 PF00072 Response regulator receiver domain RC54_RS11620 PF13426 PAS domain RC54_RS11620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11630 PF00202 Aminotransferase class-III RC54_RS11635 PF00155 Aminotransferase class I and II RC54_RS11640 PF00067 Cytochrome P450 RC54_RS11645 PF06968 Biotin and Thiamin Synthesis associated domain RC54_RS11645 PF04055 Radical SAM superfamily RC54_RS11650 PF07729 FCD domain RC54_RS11650 PF00392 Bacterial regulatory proteins, gntR family RC54_RS11660 PF00392 Bacterial regulatory proteins, gntR family RC54_RS11660 PF00155 Aminotransferase class I and II RC54_RS11665 PF03466 LysR substrate binding domain RC54_RS11665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS11670 PF01266 FAD dependent oxidoreductase RC54_RS11680 PF07690 Major Facilitator Superfamily RC54_RS11690 PF03104 DNA polymerase family B, exonuclease domain RC54_RS11690 PF00136 DNA polymerase family B RC54_RS11700 PF07690 Major Facilitator Superfamily RC54_RS11705 PF02203 Tar ligand binding domain homologue RC54_RS11705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS11705 PF00672 HAMP domain RC54_RS11725 PF02321 Outer membrane efflux protein RC54_RS11730 PF00873 AcrB/AcrD/AcrF family RC54_RS11735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS11740 PF00072 Response regulator receiver domain RC54_RS11740 PF00486 Transcriptional regulatory protein, C terminal RC54_RS11745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11745 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS11745 PF00672 HAMP domain RC54_RS11755 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS11755 PF08521 Two-component sensor kinase N-terminal RC54_RS11755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS11760 PF00072 Response regulator receiver domain RC54_RS11760 PF00486 Transcriptional regulatory protein, C terminal RC54_RS11765 PF00440 Bacterial regulatory proteins, tetR family RC54_RS11770 PF00561 alpha/beta hydrolase fold RC54_RS11775 PF04542 Sigma-70 region 2 RC54_RS11775 PF08281 Sigma-70, region 4 RC54_RS11785 PF07715 TonB-dependent Receptor Plug Domain RC54_RS11785 PF00593 TonB dependent receptor RC54_RS11790 PF04542 Sigma-70 region 2 RC54_RS11790 PF08281 Sigma-70, region 4 RC54_RS11800 PF07715 TonB-dependent Receptor Plug Domain RC54_RS11800 PF00593 TonB dependent receptor RC54_RS11825 PF00005 ABC transporter RC54_RS11825 PF00664 ABC transporter transmembrane region RC54_RS11830 PF08021 Siderophore-interacting FAD-binding domain RC54_RS11830 PF00664 ABC transporter transmembrane region RC54_RS11830 PF04954 Siderophore-interacting protein RC54_RS11830 PF00005 ABC transporter RC54_RS11840 PF07715 TonB-dependent Receptor Plug Domain RC54_RS11840 PF00593 TonB dependent receptor RC54_RS11845 PF00975 Thioesterase domain RC54_RS11850 PF08241 Methyltransferase domain RC54_RS11860 PF16197 Ketoacyl-synthetase C-terminal extension RC54_RS11860 PF00668 Condensation domain RC54_RS11860 PF02801 Beta-ketoacyl synthase, C-terminal domain RC54_RS11860 PF00698 Acyl transferase domain RC54_RS11860 PF00550 Phosphopantetheine attachment site RC54_RS11860 PF00109 Beta-ketoacyl synthase, N-terminal domain RC54_RS11865 PF00501 AMP-binding enzyme RC54_RS11865 PF00668 Condensation domain RC54_RS11865 PF08242 Methyltransferase domain RC54_RS11865 PF00550 Phosphopantetheine attachment site RC54_RS11870 PF00550 Phosphopantetheine attachment site RC54_RS11870 PF08242 Methyltransferase domain RC54_RS11870 PF00501 AMP-binding enzyme RC54_RS11870 PF00668 Condensation domain RC54_RS11875 PF17837 4'-phosphopantetheinyl transferase N-terminal domain RC54_RS11875 PF01648 4'-phosphopantetheinyl transferase superfamily RC54_RS11880 PF01527 Transposase RC54_RS11890 PF01475 Ferric uptake regulator family RC54_RS11895 PF00005 ABC transporter RC54_RS11895 PF00664 ABC transporter transmembrane region RC54_RS11900 PF03621 MbtH-like protein RC54_RS11905 PF00975 Thioesterase domain RC54_RS11915 PF00501 AMP-binding enzyme RC54_RS11920 PF00668 Condensation domain RC54_RS11920 PF00975 Thioesterase domain RC54_RS11920 PF13193 AMP-binding enzyme C-terminal domain RC54_RS11920 PF00550 Phosphopantetheine attachment site RC54_RS11920 PF00501 AMP-binding enzyme RC54_RS11925 PF00550 Phosphopantetheine attachment site RC54_RS11925 PF13193 AMP-binding enzyme C-terminal domain RC54_RS11925 PF00668 Condensation domain RC54_RS11925 PF00501 AMP-binding enzyme RC54_RS11930 PF00975 Thioesterase domain RC54_RS11930 PF00550 Phosphopantetheine attachment site RC54_RS11930 PF00668 Condensation domain RC54_RS11930 PF00501 AMP-binding enzyme RC54_RS11930 PF13193 AMP-binding enzyme C-terminal domain RC54_RS11940 PF00550 Phosphopantetheine attachment site RC54_RS11940 PF00668 Condensation domain RC54_RS11940 PF00501 AMP-binding enzyme RC54_RS11940 PF13193 AMP-binding enzyme C-terminal domain RC54_RS11950 PF07715 TonB-dependent Receptor Plug Domain RC54_RS11950 PF00593 TonB dependent receptor RC54_RS11960 PF01648 4'-phosphopantetheinyl transferase superfamily RC54_RS11970 PF00665 Integrase core domain RC54_RS11975 PF13276 HTH-like domain RC54_RS11975 PF00665 Integrase core domain RC54_RS12120 PF05707 Zonular occludens toxin (Zot) RC54_RS12125 PF03958 Bacterial type II/III secretion system short domain RC54_RS12125 PF00263 Bacterial type II and III secretion system protein RC54_RS12140 PF00665 Integrase core domain RC54_RS12245 PF05840 Bacteriophage replication gene A protein (GPA) RC54_RS12290 PF01523 Putative modulator of DNA gyrase RC54_RS12295 PF01523 Putative modulator of DNA gyrase RC54_RS12300 PF00005 ABC transporter RC54_RS12300 PF06472 ABC transporter transmembrane region 2 RC54_RS12305 PF02472 Biopolymer transport protein ExbD/TolR RC54_RS12310 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS12320 PF00593 TonB dependent receptor RC54_RS12320 PF07715 TonB-dependent Receptor Plug Domain RC54_RS12325 PF01037 Lrp/AsnC ligand binding domain RC54_RS12330 PF04542 Sigma-70 region 2 RC54_RS12330 PF08281 Sigma-70, region 4 RC54_RS12340 PF00155 Aminotransferase class I and II RC54_RS12340 PF00392 Bacterial regulatory proteins, gntR family RC54_RS12350 PF00085 Thioredoxin RC54_RS12355 PF00202 Aminotransferase class-III RC54_RS12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS12375 PF03466 LysR substrate binding domain RC54_RS12380 PF13649 Methyltransferase domain RC54_RS12395 PF07690 Major Facilitator Superfamily RC54_RS12410 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath RC54_RS12425 PF05947 Type VI secretion system, TssF RC54_RS12515 PF01590 GAF domain RC54_RS12515 PF00158 Sigma-54 interaction domain RC54_RS12515 PF02954 Bacterial regulatory protein, Fis family RC54_RS12520 PF03824 High-affinity nickel-transport protein RC54_RS12525 PF08753 NikR C terminal nickel binding domain RC54_RS12525 PF01402 Ribbon-helix-helix protein, copG family RC54_RS12540 PF05425 Copper resistance protein D RC54_RS12545 PF04234 CopC domain RC54_RS12555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS12555 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS12560 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS12560 PF00563 EAL domain RC54_RS12560 PF03707 Bacterial signalling protein N terminal repeat RC54_RS12575 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS12580 PF01381 Helix-turn-helix RC54_RS12590 PF00266 Aminotransferase class-V RC54_RS12600 PF07690 Major Facilitator Superfamily RC54_RS12605 PF00267 Gram-negative porin RC54_RS12620 PF12697 Alpha/beta hydrolase family RC54_RS12625 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RC54_RS12635 PF12697 Alpha/beta hydrolase family RC54_RS12640 PF01494 FAD binding domain RC54_RS12645 PF01979 Amidohydrolase family RC54_RS12650 PF00266 Aminotransferase class-V RC54_RS12655 PF01592 NifU-like N terminal domain RC54_RS12660 PF01521 Iron-sulphur cluster biosynthesis RC54_RS12665 PF01521 Iron-sulphur cluster biosynthesis RC54_RS12670 PF00012 Hsp70 protein RC54_RS12675 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS12680 PF00682 HMGL-like RC54_RS12685 PF03206 Nitrogen fixation protein NifW RC54_RS12690 PF01012 Electron transfer flavoprotein domain RC54_RS12695 PF01012 Electron transfer flavoprotein domain RC54_RS12695 PF00766 Electron transfer flavoprotein FAD-binding domain RC54_RS12700 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS12710 PF03459 TOBE domain RC54_RS12710 PF00005 ABC transporter RC54_RS12715 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS12725 PF04891 NifQ RC54_RS12730 PF12838 4Fe-4S dicluster domain RC54_RS12735 PF05082 Rop-like RC54_RS12740 PF03270 Protein of unknown function, DUF269 RC54_RS12745 PF02579 Dinitrogenase iron-molybdenum cofactor RC54_RS12750 PF00148 Nitrogenase component 1 type Oxidoreductase RC54_RS12755 PF04324 BFD-like [2Fe-2S] binding domain RC54_RS12755 PF00148 Nitrogenase component 1 type Oxidoreductase RC54_RS12760 PF00148 Nitrogenase component 1 type Oxidoreductase RC54_RS12760 PF11844 Domain of unknown function (DUF3364) RC54_RS12765 PF00148 Nitrogenase component 1 type Oxidoreductase RC54_RS12770 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RC54_RS12775 PF00486 Transcriptional regulatory protein, C terminal RC54_RS12775 PF00072 Response regulator receiver domain RC54_RS12805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RC54_RS12815 PF06988 NifT/FixU protein RC54_RS12820 PF00266 Aminotransferase class-V RC54_RS12835 PF04319 NifZ domain RC54_RS12845 PF01521 Iron-sulphur cluster biosynthesis RC54_RS12850 PF00037 4Fe-4S binding domain RC54_RS12855 PF02579 Dinitrogenase iron-molybdenum cofactor RC54_RS12855 PF04055 Radical SAM superfamily RC54_RS12860 PF02954 Bacterial regulatory protein, Fis family RC54_RS12860 PF00158 Sigma-54 interaction domain RC54_RS12860 PF01590 GAF domain RC54_RS12870 PF00296 Luciferase-like monooxygenase RC54_RS12875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS12875 PF03459 TOBE domain RC54_RS12890 PF06903 VirK protein RC54_RS12900 PF01156 Inosine-uridine preferring nucleoside hydrolase RC54_RS12905 PF00294 pfkB family carbohydrate kinase RC54_RS12920 PF02653 Branched-chain amino acid transport system / permease component RC54_RS12925 PF00005 ABC transporter RC54_RS12930 PF02608 ABC transporter substrate-binding protein PnrA-like RC54_RS12935 PF00392 Bacterial regulatory proteins, gntR family RC54_RS12935 PF07702 UTRA domain RC54_RS12940 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS12965 PF02203 Tar ligand binding domain homologue RC54_RS12965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS12965 PF00672 HAMP domain RC54_RS12985 PF00437 Type II/IV secretion system protein RC54_RS12990 PF00486 Transcriptional regulatory protein, C terminal RC54_RS12990 PF00072 Response regulator receiver domain RC54_RS12995 PF01464 Transglycosylase SLT domain RC54_RS13000 PF04917 Bacterial shufflon protein, N-terminal constant region RC54_RS13020 PF00437 Type II/IV secretion system protein RC54_RS13045 PF03958 Bacterial type II/III secretion system short domain RC54_RS13045 PF00263 Bacterial type II and III secretion system protein RC54_RS13070 PF01514 Secretory protein of YscJ/FliF family RC54_RS13085 PF01312 FlhB HrpN YscU SpaS Family RC54_RS13095 PF01313 Bacterial export proteins, family 3 RC54_RS13100 PF00813 FliP family RC54_RS13105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RC54_RS13120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC54_RS13120 PF18269 T3SS EscN ATPase C-terminal domain RC54_RS13120 PF02874 ATP synthase alpha/beta family, beta-barrel domain RC54_RS13140 PF00771 FHIPEP family RC54_RS13170 PF08281 Sigma-70, region 4 RC54_RS13170 PF04542 Sigma-70 region 2 RC54_RS13185 PF13847 Methyltransferase domain RC54_RS13185 PF10119 Predicted methyltransferase regulatory domain RC54_RS13240 PF09587 Bacterial capsule synthesis protein PGA_cap RC54_RS13255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS13255 PF00005 ABC transporter RC54_RS13260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS13260 PF00005 ABC transporter RC54_RS13265 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS13265 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS13270 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS13275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS13285 PF13609 Gram-negative porin RC54_RS13300 PF00106 short chain dehydrogenase RC54_RS13305 PF00202 Aminotransferase class-III RC54_RS13320 PF00465 Iron-containing alcohol dehydrogenase RC54_RS13325 PF00171 Aldehyde dehydrogenase family RC54_RS13330 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RC54_RS13330 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RC54_RS13330 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RC54_RS13335 PF02233 NAD(P) transhydrogenase beta subunit RC54_RS13340 PF01266 FAD dependent oxidoreductase RC54_RS13345 PF00005 ABC transporter RC54_RS13350 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS13355 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS13365 PF00171 Aldehyde dehydrogenase family RC54_RS13370 PF00202 Aminotransferase class-III RC54_RS13375 PF00120 Glutamine synthetase, catalytic domain RC54_RS13380 PF07722 Peptidase C26 RC54_RS13400 PF07044 Protein of unknown function (DUF1329) RC54_RS13405 PF00440 Bacterial regulatory proteins, tetR family RC54_RS13410 PF01425 Amidase RC54_RS13415 PF00324 Amino acid permease RC54_RS13420 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS13425 PF09383 NIL domain RC54_RS13425 PF00005 ABC transporter RC54_RS13430 PF03180 NLPA lipoprotein RC54_RS13445 PF00072 Response regulator receiver domain RC54_RS13445 PF00158 Sigma-54 interaction domain RC54_RS13445 PF02954 Bacterial regulatory protein, Fis family RC54_RS13450 PF00753 Metallo-beta-lactamase superfamily RC54_RS13465 PF01925 Sulfite exporter TauE/SafE RC54_RS13475 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) RC54_RS13480 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RC54_RS13480 PF00361 Proton-conducting membrane transporter RC54_RS13485 PF03466 LysR substrate binding domain RC54_RS13485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS13500 PF04143 Sulphur transport RC54_RS13510 PF00753 Metallo-beta-lactamase superfamily RC54_RS13545 PF05170 AsmA family RC54_RS13550 PF02203 Tar ligand binding domain homologue RC54_RS13550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS13550 PF00672 HAMP domain RC54_RS13555 PF05025 RbsD / FucU transport protein family RC54_RS13560 PF00294 pfkB family carbohydrate kinase RC54_RS13565 PF00356 Bacterial regulatory proteins, lacI family RC54_RS13570 PF02653 Branched-chain amino acid transport system / permease component RC54_RS13575 PF00005 ABC transporter RC54_RS13580 PF13407 Periplasmic binding protein domain RC54_RS13585 PF06965 Na+/H+ antiporter 1 RC54_RS13610 PF01979 Amidohydrolase family RC54_RS13620 PF00005 ABC transporter RC54_RS13625 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS13630 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS13640 PF00392 Bacterial regulatory proteins, gntR family RC54_RS13640 PF07729 FCD domain RC54_RS13645 PF00694 Aconitase C-terminal domain RC54_RS13645 PF00330 Aconitase family (aconitate hydratase) RC54_RS13650 PF04303 PrpF protein RC54_RS13655 PF09330 D-lactate dehydrogenase, membrane binding RC54_RS13655 PF01565 FAD binding domain RC54_RS13660 PF02653 Branched-chain amino acid transport system / permease component RC54_RS13665 PF00005 ABC transporter RC54_RS13675 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RC54_RS13680 PF01380 SIS domain RC54_RS13680 PF01418 Helix-turn-helix domain, rpiR family RC54_RS13680 PF02685 Glucokinase RC54_RS13685 PF13419 Haloacid dehalogenase-like hydrolase RC54_RS13690 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RC54_RS13690 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RC54_RS13695 PF00171 Aldehyde dehydrogenase family RC54_RS13725 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS13735 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS13735 PF06715 Gp5 C-terminal repeat (3 copies) RC54_RS13760 PF04679 ATP dependent DNA ligase C terminal region RC54_RS13760 PF01068 ATP dependent DNA ligase domain RC54_RS13760 PF13298 DNA polymerase Ligase (LigD) RC54_RS13765 PF02735 Ku70/Ku80 beta-barrel domain RC54_RS13770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RC54_RS13770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RC54_RS13770 PF00205 Thiamine pyrophosphate enzyme, central domain RC54_RS13805 PF00571 CBS domain RC54_RS13830 PF00128 Alpha amylase, catalytic domain RC54_RS13835 PF02446 4-alpha-glucanotransferase RC54_RS13840 PF11941 Domain of unknown function (DUF3459) RC54_RS13840 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RC54_RS13840 PF00128 Alpha amylase, catalytic domain RC54_RS13845 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RC54_RS13845 PF00128 Alpha amylase, catalytic domain RC54_RS13850 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RC54_RS13850 PF00128 Alpha amylase, catalytic domain RC54_RS13850 PF02806 Alpha amylase, C-terminal all-beta domain RC54_RS13855 PF08323 Starch synthase catalytic domain RC54_RS13855 PF00534 Glycosyl transferases group 1 RC54_RS13865 PF02954 Bacterial regulatory protein, Fis family RC54_RS13865 PF00158 Sigma-54 interaction domain RC54_RS13870 PF00175 Oxidoreductase NAD-binding domain RC54_RS13870 PF00042 Globin RC54_RS13870 PF00970 Oxidoreductase FAD-binding domain RC54_RS13880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC54_RS13880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS13885 PF07690 Major Facilitator Superfamily RC54_RS13895 PF03971 Monomeric isocitrate dehydrogenase RC54_RS13905 PF05985 Ethanolamine ammonia-lyase light chain (EutC) RC54_RS13910 PF06751 Ethanolamine ammonia lyase large subunit (EutB) RC54_RS13915 PF13520 Amino acid permease RC54_RS13920 PF12833 Helix-turn-helix domain RC54_RS13930 PF18254 HMW1 domain 2 RC54_RS13930 PF18071 HMW1C N-terminal RC54_RS13955 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS13960 PF00005 ABC transporter RC54_RS13965 PF00072 Response regulator receiver domain RC54_RS13965 PF00486 Transcriptional regulatory protein, C terminal RC54_RS13970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS13970 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS13970 PF08521 Two-component sensor kinase N-terminal RC54_RS13990 PF02678 Pirin RC54_RS13990 PF05726 Pirin C-terminal cupin domain RC54_RS13995 PF05726 Pirin C-terminal cupin domain RC54_RS13995 PF02678 Pirin RC54_RS14005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS14005 PF03466 LysR substrate binding domain RC54_RS14010 PF01965 DJ-1/PfpI family RC54_RS14015 PF07690 Major Facilitator Superfamily RC54_RS14025 PF13545 Crp-like helix-turn-helix domain RC54_RS14025 PF00027 Cyclic nucleotide-binding domain RC54_RS14030 PF01569 PAP2 superfamily RC54_RS14035 PF00781 Diacylglycerol kinase catalytic domain RC54_RS14055 PF07683 Cobalamin synthesis protein cobW C-terminal domain RC54_RS14055 PF02492 CobW/HypB/UreG, nucleotide-binding domain RC54_RS14060 PF02649 Type I GTP cyclohydrolase folE2 RC54_RS14080 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS14085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS14085 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS14085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS14095 PF00563 EAL domain RC54_RS14095 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS14095 PF00360 Phytochrome region RC54_RS14095 PF01590 GAF domain RC54_RS14100 PF02567 Phenazine biosynthesis-like protein RC54_RS14120 PF00563 EAL domain RC54_RS14120 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS14120 PF03707 Bacterial signalling protein N terminal repeat RC54_RS14125 PF02798 Glutathione S-transferase, N-terminal domain RC54_RS14140 PF00155 Aminotransferase class I and II RC54_RS14150 PF00005 ABC transporter RC54_RS14165 PF02653 Branched-chain amino acid transport system / permease component RC54_RS14170 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS14170 PF00005 ABC transporter RC54_RS14175 PF00501 AMP-binding enzyme RC54_RS14180 PF13545 Crp-like helix-turn-helix domain RC54_RS14180 PF00027 Cyclic nucleotide-binding domain RC54_RS14185 PF00072 Response regulator receiver domain RC54_RS14185 PF00486 Transcriptional regulatory protein, C terminal RC54_RS14190 PF00072 Response regulator receiver domain RC54_RS14190 PF00196 Bacterial regulatory proteins, luxR family RC54_RS14195 PF13492 GAF domain RC54_RS14195 PF07730 Histidine kinase RC54_RS14195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS14200 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS14200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS14200 PF00989 PAS fold RC54_RS14205 PF02779 Transketolase, pyrimidine binding domain RC54_RS14205 PF16078 2-oxoglutarate dehydrogenase N-terminus RC54_RS14205 PF00676 Dehydrogenase E1 component RC54_RS14205 PF16870 2-oxoglutarate dehydrogenase C-terminal RC54_RS14210 PF00672 HAMP domain RC54_RS14210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS14210 PF02203 Tar ligand binding domain homologue RC54_RS14225 PF00795 Carbon-nitrogen hydrolase RC54_RS14235 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS14240 PF00005 ABC transporter RC54_RS14260 PF00216 Bacterial DNA-binding protein RC54_RS14270 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS14270 PF05362 Lon protease (S16) C-terminal proteolytic domain RC54_RS14270 PF02190 ATP-dependent protease La (LON) substrate-binding domain RC54_RS14275 PF06689 ClpX C4-type zinc finger RC54_RS14275 PF07724 AAA domain (Cdc48 subfamily) RC54_RS14275 PF10431 C-terminal, D2-small domain, of ClpB protein RC54_RS14280 PF00574 Clp protease RC54_RS14285 PF05697 Bacterial trigger factor protein (TF) RC54_RS14285 PF05698 Bacterial trigger factor protein (TF) C-terminus RC54_RS14285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RC54_RS14290 PF05981 CreA protein RC54_RS14335 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RC54_RS14335 PF00722 Glycosyl hydrolases family 16 RC54_RS14360 PF01593 Flavin containing amine oxidoreductase RC54_RS14365 PF01070 FMN-dependent dehydrogenase RC54_RS14375 PF01026 TatD related DNase RC54_RS14380 PF00072 Response regulator receiver domain RC54_RS14385 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS14385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS14390 PF09115 DNA polymerase III, delta subunit, C terminal RC54_RS14395 PF02223 Thymidylate kinase RC54_RS14400 PF02618 YceG-like family RC54_RS14405 PF01571 Aminomethyltransferase folate-binding domain RC54_RS14420 PF03009 Glycerophosphoryl diester phosphodiesterase family RC54_RS14425 PF05506 Domain of unknown function (DUF756) RC54_RS14425 PF04185 Phosphoesterase family RC54_RS14430 PF03544 Gram-negative bacterial TonB protein C-terminal RC54_RS14435 PF02472 Biopolymer transport protein ExbD/TolR RC54_RS14440 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS14450 PF00356 Bacterial regulatory proteins, lacI family RC54_RS14455 PF13416 Bacterial extracellular solute-binding protein RC54_RS14460 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS14465 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS14470 PF01965 DJ-1/PfpI family RC54_RS14475 PF03466 LysR substrate binding domain RC54_RS14475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS14480 PF00375 Sodium:dicarboxylate symporter family RC54_RS14485 PF02743 Cache domain RC54_RS14485 PF00672 HAMP domain RC54_RS14485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS14490 PF13673 Acetyltransferase (GNAT) domain RC54_RS14505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS14505 PF03466 LysR substrate binding domain RC54_RS14510 PF00465 Iron-containing alcohol dehydrogenase RC54_RS14520 PF07690 Major Facilitator Superfamily RC54_RS14525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RC54_RS14525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RC54_RS14535 PF11339 Protein of unknown function (DUF3141) RC54_RS14555 PF03069 Acetamidase/Formamidase family RC54_RS14560 PF00795 Carbon-nitrogen hydrolase RC54_RS14565 PF00005 ABC transporter RC54_RS14570 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS14570 PF00005 ABC transporter RC54_RS14590 PF09308 LuxQ, periplasmic RC54_RS14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS14590 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS14590 PF00072 Response regulator receiver domain RC54_RS14595 PF00072 Response regulator receiver domain RC54_RS14600 PF02321 Outer membrane efflux protein RC54_RS14605 PF00873 AcrB/AcrD/AcrF family RC54_RS14610 PF00873 AcrB/AcrD/AcrF family RC54_RS14615 PF13533 Biotin-lipoyl like RC54_RS14625 PF07685 CobB/CobQ-like glutamine amidotransferase domain RC54_RS14625 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RC54_RS14630 PF00155 Aminotransferase class I and II RC54_RS14635 PF17113 Regulatory signalling modulator protein AmpE RC54_RS14635 PF03186 CobD/Cbib protein RC54_RS14640 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RC54_RS14645 PF00881 Nitroreductase family RC54_RS14650 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RC54_RS14650 PF07685 CobB/CobQ-like glutamine amidotransferase domain RC54_RS14655 PF12557 Cob(I)alamin adenosyltransferase N terminal RC54_RS14655 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RC54_RS14660 PF07683 Cobalamin synthesis protein cobW C-terminal domain RC54_RS14660 PF02492 CobW/HypB/UreG, nucleotide-binding domain RC54_RS14665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC54_RS14665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RC54_RS14670 PF01890 Cobalamin synthesis G C-terminus RC54_RS14670 PF11761 Cobalamin biosynthesis central region RC54_RS14670 PF11760 Cobalamin synthesis G N-terminal RC54_RS14675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC54_RS14680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC54_RS14685 PF01888 CbiD RC54_RS14690 PF01903 CbiX RC54_RS14695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC54_RS14695 PF14824 Sirohaem biosynthesis protein central RC54_RS14695 PF10414 Sirohaem synthase dimerisation region RC54_RS14700 PF13519 von Willebrand factor type A domain RC54_RS14700 PF07728 AAA domain (dynein-related subfamily) RC54_RS14700 PF17863 AAA lid domain RC54_RS14705 PF02514 CobN/Magnesium Chelatase RC54_RS14740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RC54_RS14740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RC54_RS14740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RC54_RS14740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RC54_RS14755 PF00483 Nucleotidyl transferase RC54_RS14765 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS14765 PF03473 MOSC domain RC54_RS14765 PF03476 MOSC N-terminal beta barrel domain RC54_RS14775 PF03061 Thioesterase superfamily RC54_RS14780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC54_RS14780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS14795 PF00698 Acyl transferase domain RC54_RS14800 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RC54_RS14815 PF01039 Carboxyl transferase domain RC54_RS14820 PF06857 Malonate decarboxylase delta subunit (MdcD) RC54_RS14825 PF16957 Malonate decarboxylase, alpha subunit, transporter RC54_RS14840 PF03480 Bacterial extracellular solute-binding protein, family 7 RC54_RS14845 PF00392 Bacterial regulatory proteins, gntR family RC54_RS14845 PF07729 FCD domain RC54_RS14850 PF00849 RNA pseudouridylate synthase RC54_RS14855 PF07804 HipA-like C-terminal domain RC54_RS14855 PF13657 HipA N-terminal domain RC54_RS14890 PF08281 Sigma-70, region 4 RC54_RS14890 PF04542 Sigma-70 region 2 RC54_RS14900 PF00563 EAL domain RC54_RS14900 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS14900 PF03707 Bacterial signalling protein N terminal repeat RC54_RS14915 PF02321 Outer membrane efflux protein RC54_RS14920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS14920 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS14925 PF07690 Major Facilitator Superfamily RC54_RS14930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS14930 PF03466 LysR substrate binding domain RC54_RS14935 PF00248 Aldo/keto reductase family RC54_RS14940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RC54_RS14945 PF00756 Putative esterase RC54_RS14950 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS14950 PF00107 Zinc-binding dehydrogenase RC54_RS14955 PF03707 Bacterial signalling protein N terminal repeat RC54_RS14955 PF00563 EAL domain RC54_RS14955 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS14965 PF00248 Aldo/keto reductase family RC54_RS14970 PF13593 SBF-like CPA transporter family (DUF4137) RC54_RS14975 PF08274 PhnA Zinc-Ribbon RC54_RS14975 PF03831 PhnA domain RC54_RS14980 PF04205 FMN-binding domain RC54_RS14980 PF12801 4Fe-4S binding domain RC54_RS14985 PF03239 Iron permease FTR1 family RC54_RS14990 PF13473 Cupredoxin-like domain RC54_RS14995 PF10634 Fe2+ transport protein RC54_RS15000 PF00672 HAMP domain RC54_RS15000 PF02203 Tar ligand binding domain homologue RC54_RS15000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS15005 PF00072 Response regulator receiver domain RC54_RS15015 PF07730 Histidine kinase RC54_RS15015 PF17200 Single Cache domain 2 RC54_RS15020 PF00196 Bacterial regulatory proteins, luxR family RC54_RS15020 PF00072 Response regulator receiver domain RC54_RS15025 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS15030 PF04973 Nicotinamide mononucleotide transporter RC54_RS15035 PF04977 Septum formation initiator RC54_RS15040 PF00113 Enolase, C-terminal TIM barrel domain RC54_RS15040 PF03952 Enolase, N-terminal domain RC54_RS15045 PF06418 CTP synthase N-terminus RC54_RS15045 PF00117 Glutamine amidotransferase class-I RC54_RS15050 PF12697 Alpha/beta hydrolase family RC54_RS15055 PF00753 Metallo-beta-lactamase superfamily RC54_RS15055 PF03772 Competence protein RC54_RS15060 PF01026 TatD related DNase RC54_RS15065 PF07687 Peptidase dimerisation domain RC54_RS15065 PF01546 Peptidase family M20/M25/M40 RC54_RS15070 PF00005 ABC transporter RC54_RS15075 PF12704 MacB-like periplasmic core domain RC54_RS15075 PF02687 FtsX-like permease family RC54_RS15080 PF00580 UvrD/REP helicase N-terminal domain RC54_RS15080 PF13361 UvrD-like helicase C-terminal domain RC54_RS15090 PF02272 DHHA1 domain RC54_RS15090 PF17768 RecJ OB domain RC54_RS15090 PF01368 DHH family RC54_RS15115 PF00152 tRNA synthetases class II (D, K and N) RC54_RS15115 PF01336 OB-fold nucleic acid binding domain RC54_RS15140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS15140 PF03466 LysR substrate binding domain RC54_RS15145 PF01118 Semialdehyde dehydrogenase, NAD binding domain RC54_RS15155 PF03480 Bacterial extracellular solute-binding protein, family 7 RC54_RS15160 PF00107 Zinc-binding dehydrogenase RC54_RS15160 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS15165 PF03328 HpcH/HpaI aldolase/citrate lyase family RC54_RS15170 PF02515 CoA-transferase family III RC54_RS15175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS15175 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS15175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS15185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS15185 PF03466 LysR substrate binding domain RC54_RS15195 PF00106 short chain dehydrogenase RC54_RS15230 PF01425 Amidase RC54_RS15235 PF02979 Nitrile hydratase, alpha chain RC54_RS15240 PF02211 Nitrile hydratase beta subunit RC54_RS15245 PF07683 Cobalamin synthesis protein cobW C-terminal domain RC54_RS15245 PF02492 CobW/HypB/UreG, nucleotide-binding domain RC54_RS15255 PF12833 Helix-turn-helix domain RC54_RS15255 PF14525 AraC-binding-like domain RC54_RS15260 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS15260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS15260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS15265 PF02803 Thiolase, C-terminal domain RC54_RS15265 PF00108 Thiolase, N-terminal domain RC54_RS15270 PF00106 short chain dehydrogenase RC54_RS15275 PF13193 AMP-binding enzyme C-terminal domain RC54_RS15275 PF00501 AMP-binding enzyme RC54_RS15280 PF12833 Helix-turn-helix domain RC54_RS15285 PF12833 Helix-turn-helix domain RC54_RS15285 PF02311 AraC-like ligand binding domain RC54_RS15300 PF13439 Glycosyltransferase Family 4 RC54_RS15305 PF00586 AIR synthase related protein, N-terminal domain RC54_RS15305 PF02769 AIR synthase related protein, C-terminal domain RC54_RS15320 PF00795 Carbon-nitrogen hydrolase RC54_RS15330 PF00155 Aminotransferase class I and II RC54_RS15330 PF00392 Bacterial regulatory proteins, gntR family RC54_RS15340 PF13533 Biotin-lipoyl like RC54_RS15345 PF03412 Peptidase C39 family RC54_RS15345 PF00664 ABC transporter transmembrane region RC54_RS15345 PF00005 ABC transporter RC54_RS15355 PF02321 Outer membrane efflux protein RC54_RS15360 PF13533 Biotin-lipoyl like RC54_RS15365 PF00005 ABC transporter RC54_RS15365 PF00664 ABC transporter transmembrane region RC54_RS15365 PF03412 Peptidase C39 family RC54_RS15385 PF14525 AraC-binding-like domain RC54_RS15385 PF12833 Helix-turn-helix domain RC54_RS15395 PF00171 Aldehyde dehydrogenase family RC54_RS15400 PF07833 Copper amine oxidase N-terminal domain RC54_RS15400 PF02728 Copper amine oxidase, N3 domain RC54_RS15400 PF02727 Copper amine oxidase, N2 domain RC54_RS15400 PF01179 Copper amine oxidase, enzyme domain RC54_RS15405 PF13609 Gram-negative porin RC54_RS15410 PF02405 Permease MlaE RC54_RS15415 PF00005 ABC transporter RC54_RS15430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS15430 PF03466 LysR substrate binding domain RC54_RS15435 PF04172 LrgB-like family RC54_RS15450 PF01161 Phosphatidylethanolamine-binding protein RC54_RS15460 PF02308 MgtC family RC54_RS15465 PF07690 Major Facilitator Superfamily RC54_RS15470 PF04324 BFD-like [2Fe-2S] binding domain RC54_RS15470 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RC54_RS15470 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RC54_RS15470 PF18267 Rubredoxin NAD+ reductase C-terminal domain RC54_RS15470 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS15475 PF13806 Rieske-like [2Fe-2S] domain RC54_RS15480 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RC54_RS15480 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS15480 PF18267 Rubredoxin NAD+ reductase C-terminal domain RC54_RS15480 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RC54_RS15480 PF04324 BFD-like [2Fe-2S] binding domain RC54_RS15485 PF01568 Molydopterin dinucleotide binding domain RC54_RS15485 PF00384 Molybdopterin oxidoreductase RC54_RS15485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC54_RS15485 PF04324 BFD-like [2Fe-2S] binding domain RC54_RS15525 PF11737 Protein of unknown function (DUF3300) RC54_RS15530 PF03144 Elongation factor Tu domain 2 RC54_RS15530 PF00009 Elongation factor Tu GTP binding domain RC54_RS15530 PF16658 Class II release factor RF3, C-terminal domain RC54_RS15535 PF00719 Inorganic pyrophosphatase RC54_RS15545 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase RC54_RS15550 PF02602 Uroporphyrinogen-III synthase HemD RC54_RS15555 PF03900 Porphobilinogen deaminase, C-terminal domain RC54_RS15555 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RC54_RS15560 PF00311 Phosphoenolpyruvate carboxylase RC54_RS15580 PF00206 Lyase RC54_RS15580 PF14698 Argininosuccinate lyase C-terminal RC54_RS15585 PF13458 Periplasmic binding protein RC54_RS15590 PF02653 Branched-chain amino acid transport system / permease component RC54_RS15595 PF11862 Domain of unknown function (DUF3382) RC54_RS15595 PF02653 Branched-chain amino acid transport system / permease component RC54_RS15600 PF00005 ABC transporter RC54_RS15600 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS15605 PF00005 ABC transporter RC54_RS15640 PF00912 Transglycosylase RC54_RS15640 PF00905 Penicillin binding protein transpeptidase domain RC54_RS15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS15650 PF03466 LysR substrate binding domain RC54_RS15655 PF07690 Major Facilitator Superfamily RC54_RS15670 PF00156 Phosphoribosyl transferase domain RC54_RS15675 PF00709 Adenylosuccinate synthetase RC54_RS15680 PF13393 Histidyl-tRNA synthetase RC54_RS15685 PF01145 SPFH domain / Band 7 family RC54_RS15690 PF12221 Bacterial membrane protein N terminal RC54_RS15690 PF01145 SPFH domain / Band 7 family RC54_RS15695 PF01926 50S ribosome-binding GTPase RC54_RS15695 PF13167 GTP-binding GTPase N-terminal RC54_RS15695 PF16360 GTP-binding GTPase Middle Region RC54_RS15700 PF17209 Hfq protein RC54_RS15705 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RC54_RS15705 PF01926 50S ribosome-binding GTPase RC54_RS15710 PF13360 PQQ-like domain RC54_RS15720 PF13393 Histidyl-tRNA synthetase RC54_RS15720 PF03129 Anticodon binding domain RC54_RS15725 PF04551 GcpE protein RC54_RS15735 PF04055 Radical SAM superfamily RC54_RS15740 PF00334 Nucleoside diphosphate kinase RC54_RS15745 PF01027 Inhibitor of apoptosis-promoting Bax1 RC54_RS15750 PF05958 tRNA (Uracil-5-)-methyltransferase RC54_RS15755 PF04545 Sigma-70, region 4 RC54_RS15755 PF04539 Sigma-70 region 3 RC54_RS15755 PF04542 Sigma-70 region 2 RC54_RS15755 PF00140 Sigma-70 factor, region 1.2 RC54_RS15760 PF01551 Peptidase family M23 RC54_RS15760 PF01476 LysM domain RC54_RS15770 PF01975 Survival protein SurE RC54_RS15780 PF13307 Helicase C-terminal domain RC54_RS15780 PF06733 DEAD_2 RC54_RS15795 PF03969 AFG1-like ATPase RC54_RS15800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RC54_RS15800 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS15805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RC54_RS15805 PF00364 Biotin-requiring enzyme RC54_RS15805 PF02817 e3 binding domain RC54_RS15810 PF00676 Dehydrogenase E1 component RC54_RS15810 PF16870 2-oxoglutarate dehydrogenase C-terminal RC54_RS15810 PF02779 Transketolase, pyrimidine binding domain RC54_RS15810 PF16078 2-oxoglutarate dehydrogenase N-terminus RC54_RS15815 PF00285 Citrate synthase, C-terminal domain RC54_RS15820 PF03937 Flavinator of succinate dehydrogenase RC54_RS15825 PF13085 2Fe-2S iron-sulfur cluster binding domain RC54_RS15830 PF00890 FAD binding domain RC54_RS15830 PF02910 Fumarate reductase flavoprotein C-term RC54_RS15840 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RC54_RS15845 PF00392 Bacterial regulatory proteins, gntR family RC54_RS15845 PF07702 UTRA domain RC54_RS15850 PF00056 lactate/malate dehydrogenase, NAD binding domain RC54_RS15850 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RC54_RS15865 PF00330 Aconitase family (aconitate hydratase) RC54_RS15865 PF00694 Aconitase C-terminal domain RC54_RS15875 PF01584 CheW-like domain RC54_RS15880 PF01584 CheW-like domain RC54_RS15880 PF01627 Hpt domain RC54_RS15880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS15880 PF02895 Signal transducing histidine kinase, homodimeric domain RC54_RS15880 PF09078 CheY binding RC54_RS15885 PF00072 Response regulator receiver domain RC54_RS15895 PF13677 Membrane MotB of proton-channel complex MotA/MotB RC54_RS15895 PF00691 OmpA family RC54_RS15900 PF01618 MotA/TolQ/ExbB proton channel family RC54_RS15910 PF05280 Flagellar transcriptional activator (FlhC) RC54_RS15915 PF05247 Flagellar transcriptional activator (FlhD) RC54_RS15920 PF01053 Cys/Met metabolism PLP-dependent enzyme RC54_RS15930 PF00919 Uncharacterized protein family UPF0004 RC54_RS15930 PF18693 TRAM domain RC54_RS15930 PF04055 Radical SAM superfamily RC54_RS15935 PF07879 PHB/PHA accumulation regulator DNA-binding domain RC54_RS15935 PF05233 PHB accumulation regulatory domain RC54_RS15940 PF00106 short chain dehydrogenase RC54_RS15945 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RC54_RS15970 PF02578 Multi-copper polyphenol oxidoreductase laccase RC54_RS15975 PF00849 RNA pseudouridylate synthase RC54_RS15975 PF01479 S4 domain RC54_RS15980 PF13525 Outer membrane lipoprotein RC54_RS15985 PF03883 Peroxide stress protein YaaA RC54_RS16000 PF00155 Aminotransferase class I and II RC54_RS16005 PF02798 Glutathione S-transferase, N-terminal domain RC54_RS16005 PF00043 Glutathione S-transferase, C-terminal domain RC54_RS16010 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS16010 PF08447 PAS fold RC54_RS16010 PF13426 PAS domain RC54_RS16010 PF05231 MASE1 RC54_RS16010 PF00563 EAL domain RC54_RS16010 PF08448 PAS fold RC54_RS16015 PF01575 MaoC like domain RC54_RS16020 PF01590 GAF domain RC54_RS16020 PF00360 Phytochrome region RC54_RS16020 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS16020 PF00563 EAL domain RC54_RS16025 PF01339 CheB methylesterase RC54_RS16025 PF00072 Response regulator receiver domain RC54_RS16030 PF00072 Response regulator receiver domain RC54_RS16030 PF01584 CheW-like domain RC54_RS16030 PF01627 Hpt domain RC54_RS16030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS16040 PF01739 CheR methyltransferase, SAM binding domain RC54_RS16050 PF12729 Four helix bundle sensory module for signal transduction RC54_RS16050 PF00672 HAMP domain RC54_RS16050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS16065 PF00271 Helicase conserved C-terminal domain RC54_RS16065 PF17757 UvrB interaction domain RC54_RS16065 PF00270 DEAD/DEAH box helicase RC54_RS16065 PF03461 TRCF domain RC54_RS16065 PF02559 CarD-like/TRCF domain RC54_RS16070 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RC54_RS16075 PF02542 YgbB family RC54_RS16080 PF00313 'Cold-shock' DNA-binding domain RC54_RS16085 PF01274 Malate synthase RC54_RS16090 PF03466 LysR substrate binding domain RC54_RS16090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS16095 PF02203 Tar ligand binding domain homologue RC54_RS16095 PF00672 HAMP domain RC54_RS16095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS16100 PF00392 Bacterial regulatory proteins, gntR family RC54_RS16100 PF00155 Aminotransferase class I and II RC54_RS16105 PF00368 Hydroxymethylglutaryl-coenzyme A reductase RC54_RS16115 PF07690 Major Facilitator Superfamily RC54_RS16155 PF13533 Biotin-lipoyl like RC54_RS16160 PF00664 ABC transporter transmembrane region RC54_RS16160 PF00005 ABC transporter RC54_RS16165 PF12792 CSS motif domain associated with EAL RC54_RS16165 PF00563 EAL domain RC54_RS16180 PF01625 Peptide methionine sulfoxide reductase RC54_RS16185 PF01794 Ferric reductase like transmembrane component RC54_RS16190 PF00174 Oxidoreductase molybdopterin binding domain RC54_RS16195 PF00072 Response regulator receiver domain RC54_RS16195 PF00486 Transcriptional regulatory protein, C terminal RC54_RS16200 PF00672 HAMP domain RC54_RS16200 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS16200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS16215 PF01654 Cytochrome bd terminal oxidase subunit I RC54_RS16220 PF02322 Cytochrome bd terminal oxidase subunit II RC54_RS16235 PF02566 OsmC-like protein RC54_RS16240 PF01047 MarR family RC54_RS16250 PF09285 Elongation factor P, C-terminal RC54_RS16250 PF08207 Elongation factor P (EF-P) KOW-like domain RC54_RS16250 PF01132 Elongation factor P (EF-P) OB domain RC54_RS16255 PF07729 FCD domain RC54_RS16255 PF00392 Bacterial regulatory proteins, gntR family RC54_RS16260 PF01370 NAD dependent epimerase/dehydratase family RC54_RS16265 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RC54_RS16265 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RC54_RS16270 PF00171 Aldehyde dehydrogenase family RC54_RS16280 PF03466 LysR substrate binding domain RC54_RS16280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS16285 PF01965 DJ-1/PfpI family RC54_RS16305 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS16335 PF00749 tRNA synthetases class I (E and Q), catalytic domain RC54_RS16340 PF10609 NUBPL iron-transfer P-loop NTPase RC54_RS16345 PF01588 Putative tRNA binding domain RC54_RS16345 PF09334 tRNA synthetases class I (M) RC54_RS16345 PF08264 Anticodon-binding domain of tRNA RC54_RS16355 PF04198 Putative sugar-binding domain RC54_RS16360 PF00005 ABC transporter RC54_RS16360 PF17912 MalK OB fold domain RC54_RS16365 PF13416 Bacterial extracellular solute-binding protein RC54_RS16370 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS16375 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS16390 PF02616 Segregation and condensation protein ScpA RC54_RS16395 PF02569 Pantoate-beta-alanine ligase RC54_RS16400 PF01497 Periplasmic binding protein RC54_RS16410 PF00005 ABC transporter RC54_RS16415 PF01032 FecCD transport family RC54_RS16420 PF07715 TonB-dependent Receptor Plug Domain RC54_RS16420 PF00593 TonB dependent receptor RC54_RS16425 PF04344 Chemotaxis phosphatase, CheZ RC54_RS16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS16430 PF01627 Hpt domain RC54_RS16430 PF00072 Response regulator receiver domain RC54_RS16430 PF01584 CheW-like domain RC54_RS16430 PF02895 Signal transducing histidine kinase, homodimeric domain RC54_RS16435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS16435 PF03466 LysR substrate binding domain RC54_RS16440 PF01925 Sulfite exporter TauE/SafE RC54_RS16445 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RC54_RS16445 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RC54_RS16455 PF01507 Phosphoadenosine phosphosulfate reductase family RC54_RS16460 PF01507 Phosphoadenosine phosphosulfate reductase family RC54_RS16465 PF00009 Elongation factor Tu GTP binding domain RC54_RS16470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC54_RS16480 PF03739 Lipopolysaccharide export system permease LptF/LptG RC54_RS16485 PF03739 Lipopolysaccharide export system permease LptF/LptG RC54_RS16490 PF02789 Cytosol aminopeptidase family, N-terminal domain RC54_RS16490 PF00883 Cytosol aminopeptidase family, catalytic domain RC54_RS16495 PF00326 Prolyl oligopeptidase family RC54_RS16495 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RC54_RS16500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RC54_RS16515 PF03372 Endonuclease/Exonuclease/phosphatase family RC54_RS16530 PF13193 AMP-binding enzyme C-terminal domain RC54_RS16530 PF16177 Acetyl-coenzyme A synthetase N-terminus RC54_RS16530 PF00501 AMP-binding enzyme RC54_RS16540 PF00285 Citrate synthase, C-terminal domain RC54_RS16550 PF00158 Sigma-54 interaction domain RC54_RS16550 PF02954 Bacterial regulatory protein, Fis family RC54_RS16550 PF06506 Propionate catabolism activator RC54_RS16555 PF07690 Major Facilitator Superfamily RC54_RS16560 PF00672 HAMP domain RC54_RS16560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS16560 PF02203 Tar ligand binding domain homologue RC54_RS16575 PF03466 LysR substrate binding domain RC54_RS16575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS16590 PF00753 Metallo-beta-lactamase superfamily RC54_RS16590 PF16123 Hydroxyacylglutathione hydrolase C-terminus RC54_RS16595 PF00072 Response regulator receiver domain RC54_RS16595 PF02954 Bacterial regulatory protein, Fis family RC54_RS16595 PF00158 Sigma-54 interaction domain RC54_RS16600 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS16600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS16600 PF00989 PAS fold RC54_RS16605 PF00120 Glutamine synthetase, catalytic domain RC54_RS16605 PF03951 Glutamine synthetase, beta-Grasp domain RC54_RS16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS16615 PF09456 RcsC Alpha-Beta-Loop (ABL) RC54_RS16615 PF00072 Response regulator receiver domain RC54_RS16615 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS16620 PF00196 Bacterial regulatory proteins, luxR family RC54_RS16620 PF00072 Response regulator receiver domain RC54_RS16660 PF04384 Iron-sulphur cluster assembly RC54_RS16665 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS16670 PF00012 Hsp70 protein RC54_RS16675 PF01810 LysE type translocator RC54_RS16680 PF07743 HSCB C-terminal oligomerisation domain RC54_RS16685 PF01521 Iron-sulphur cluster biosynthesis RC54_RS16690 PF01592 NifU-like N terminal domain RC54_RS16695 PF00266 Aminotransferase class-V RC54_RS16700 PF02082 Transcriptional regulator RC54_RS16705 PF07729 FCD domain RC54_RS16705 PF00392 Bacterial regulatory proteins, gntR family RC54_RS16710 PF00701 Dihydrodipicolinate synthetase family RC54_RS16715 PF02203 Tar ligand binding domain homologue RC54_RS16715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS16715 PF00672 HAMP domain RC54_RS16720 PF10282 Lactonase, 7-bladed beta-propeller RC54_RS16725 PF08666 SAF domain RC54_RS16725 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RC54_RS16730 PF07690 Major Facilitator Superfamily RC54_RS16735 PF03773 Predicted permease RC54_RS16745 PF00586 AIR synthase related protein, N-terminal domain RC54_RS16745 PF02769 AIR synthase related protein, C-terminal domain RC54_RS16760 PF00155 Aminotransferase class I and II RC54_RS16765 PF00271 Helicase conserved C-terminal domain RC54_RS16765 PF04851 Type III restriction enzyme, res subunit RC54_RS16765 PF02151 UvrB/uvrC motif RC54_RS16765 PF12344 Ultra-violet resistance protein B RC54_RS16765 PF17757 UvrB interaction domain RC54_RS16775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS16775 PF00672 HAMP domain RC54_RS16775 PF02743 Cache domain RC54_RS16785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS16785 PF03466 LysR substrate binding domain RC54_RS16795 PF01297 Zinc-uptake complex component A periplasmic RC54_RS16800 PF00950 ABC 3 transport family RC54_RS16805 PF00005 ABC transporter RC54_RS16815 PF00005 ABC transporter RC54_RS16845 PF07687 Peptidase dimerisation domain RC54_RS16845 PF01546 Peptidase family M20/M25/M40 RC54_RS16850 PF07687 Peptidase dimerisation domain RC54_RS16850 PF01546 Peptidase family M20/M25/M40 RC54_RS16855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS16855 PF00005 ABC transporter RC54_RS16860 PF00005 ABC transporter RC54_RS16860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS16865 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS16865 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS16870 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS16875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS16880 PF03466 LysR substrate binding domain RC54_RS16880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS16885 PF03797 Autotransporter beta-domain RC54_RS16885 PF12951 Passenger-associated-transport-repeat RC54_RS16885 PF00082 Subtilase family RC54_RS16895 PF07690 Major Facilitator Superfamily RC54_RS16900 PF13533 Biotin-lipoyl like RC54_RS16910 PF00561 alpha/beta hydrolase fold RC54_RS16915 PF01037 Lrp/AsnC ligand binding domain RC54_RS16920 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS16925 PF03922 OmpW family RC54_RS16935 PF00027 Cyclic nucleotide-binding domain RC54_RS16935 PF13545 Crp-like helix-turn-helix domain RC54_RS16950 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RC54_RS16950 PF13746 4Fe-4S dicluster domain RC54_RS16950 PF12801 4Fe-4S binding domain RC54_RS16955 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC54_RS16955 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RC54_RS16970 PF00115 Cytochrome C and Quinol oxidase polypeptide I RC54_RS16980 PF00403 Heavy-metal-associated domain RC54_RS16990 PF06969 HemN C-terminal domain RC54_RS16990 PF04055 Radical SAM superfamily RC54_RS17010 PF00593 TonB dependent receptor RC54_RS17010 PF07715 TonB-dependent Receptor Plug Domain RC54_RS17015 PF00892 EamA-like transporter family RC54_RS17020 PF02592 Putative vitamin uptake transporter RC54_RS17025 PF07690 Major Facilitator Superfamily RC54_RS17030 PF01546 Peptidase family M20/M25/M40 RC54_RS17030 PF07687 Peptidase dimerisation domain RC54_RS17045 PF00072 Response regulator receiver domain RC54_RS17065 PF01527 Transposase RC54_RS17070 PF13333 Integrase core domain RC54_RS17070 PF00665 Integrase core domain RC54_RS17070 PF13276 HTH-like domain RC54_RS17080 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS17080 PF00360 Phytochrome region RC54_RS17080 PF00563 EAL domain RC54_RS17080 PF01590 GAF domain RC54_RS17120 PF05840 Bacteriophage replication gene A protein (GPA) RC54_RS17140 PF00293 NUDIX domain RC54_RS17145 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RC54_RS17150 PF04377 Arginine-tRNA-protein transferase, C terminus RC54_RS17150 PF04376 Arginine-tRNA-protein transferase, N terminus RC54_RS17155 PF01180 Dihydroorotate dehydrogenase RC54_RS17180 PF02698 DUF218 domain RC54_RS17185 PF00672 HAMP domain RC54_RS17185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS17185 PF17200 Single Cache domain 2 RC54_RS17190 PF06532 Negative regulator of sigma F RC54_RS17195 PF04542 Sigma-70 region 2 RC54_RS17195 PF08281 Sigma-70, region 4 RC54_RS17210 PF05114 Protein of unknown function (DUF692) RC54_RS17225 PF08241 Methyltransferase domain RC54_RS17245 PF00576 HIUase/Transthyretin family RC54_RS17250 PF00593 TonB dependent receptor RC54_RS17250 PF07715 TonB-dependent Receptor Plug Domain RC54_RS17255 PF00593 TonB dependent receptor RC54_RS17255 PF07715 TonB-dependent Receptor Plug Domain RC54_RS17260 PF18331 PKHD-type hydroxylase C-terminal domain RC54_RS17260 PF13640 2OG-Fe(II) oxygenase superfamily RC54_RS17275 PF07687 Peptidase dimerisation domain RC54_RS17275 PF01546 Peptidase family M20/M25/M40 RC54_RS17280 PF01979 Amidohydrolase family RC54_RS17295 PF00860 Permease family RC54_RS17300 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS17300 PF01799 [2Fe-2S] binding domain RC54_RS17305 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RC54_RS17305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RC54_RS17315 PF01979 Amidohydrolase family RC54_RS17320 PF00440 Bacterial regulatory proteins, tetR family RC54_RS17325 PF02321 Outer membrane efflux protein RC54_RS17330 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS17330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS17335 PF07690 Major Facilitator Superfamily RC54_RS17350 PF01624 MutS domain I RC54_RS17350 PF05190 MutS family domain IV RC54_RS17350 PF00488 MutS domain V RC54_RS17350 PF05192 MutS domain III RC54_RS17350 PF05188 MutS domain II RC54_RS17360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RC54_RS17365 PF08007 Cupin superfamily protein RC54_RS17375 PF12706 Beta-lactamase superfamily domain RC54_RS17380 PF06804 NlpB/DapX lipoprotein RC54_RS17385 PF00701 Dihydrodipicolinate synthetase family RC54_RS17390 PF00579 tRNA synthetases class I (W and Y) RC54_RS17395 PF02163 Peptidase family M50 RC54_RS17400 PF01300 Telomere recombination RC54_RS17405 PF01435 Peptidase family M48 RC54_RS17410 PF02811 PHP domain RC54_RS17415 PF00561 alpha/beta hydrolase fold RC54_RS17425 PF03641 Possible lysine decarboxylase RC54_RS17430 PF01053 Cys/Met metabolism PLP-dependent enzyme RC54_RS17435 PF00156 Phosphoribosyl transferase domain RC54_RS17440 PF02674 Colicin V production protein RC54_RS17450 PF08245 Mur ligase middle domain RC54_RS17450 PF02875 Mur ligase family, glutamate ligase domain RC54_RS17455 PF01039 Carboxyl transferase domain RC54_RS17455 PF17848 Acetyl-coA carboxylase zinc finger domain RC54_RS17460 PF00290 Tryptophan synthase alpha chain RC54_RS17465 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS17470 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RC54_RS17475 PF01416 tRNA pseudouridine synthase RC54_RS17485 PF01118 Semialdehyde dehydrogenase, NAD binding domain RC54_RS17485 PF02774 Semialdehyde dehydrogenase, dimerisation domain RC54_RS17490 PF00180 Isocitrate/isopropylmalate dehydrogenase RC54_RS17495 PF00694 Aconitase C-terminal domain RC54_RS17505 PF00330 Aconitase family (aconitate hydratase) RC54_RS17510 PF01435 Peptidase family M48 RC54_RS17515 PF01264 Chorismate synthase RC54_RS17520 PF07690 Major Facilitator Superfamily RC54_RS17535 PF03631 Virulence factor BrkB RC54_RS17540 PF03358 NADPH-dependent FMN reductase RC54_RS17550 PF01565 FAD binding domain RC54_RS17550 PF02913 FAD linked oxidases, C-terminal domain RC54_RS17555 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS17555 PF00563 EAL domain RC54_RS17555 PF03707 Bacterial signalling protein N terminal repeat RC54_RS17565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RC54_RS17565 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS17570 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS17575 PF00005 ABC transporter RC54_RS17575 PF08402 TOBE domain RC54_RS17580 PF06715 Gp5 C-terminal repeat (3 copies) RC54_RS17580 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS17630 PF00392 Bacterial regulatory proteins, gntR family RC54_RS17630 PF07729 FCD domain RC54_RS17640 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RC54_RS17645 PF03466 LysR substrate binding domain RC54_RS17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS17650 PF07286 Protein of unknown function (DUF1445) RC54_RS17655 PF07690 Major Facilitator Superfamily RC54_RS17660 PF00999 Sodium/hydrogen exchanger family RC54_RS17670 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS17705 PF00005 ABC transporter RC54_RS17715 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS17715 PF00175 Oxidoreductase NAD-binding domain RC54_RS17715 PF00970 Oxidoreductase FAD-binding domain RC54_RS17720 PF00202 Aminotransferase class-III RC54_RS17725 PF00877 NlpC/P60 family RC54_RS17730 PF00392 Bacterial regulatory proteins, gntR family RC54_RS17730 PF07729 FCD domain RC54_RS17735 PF02615 Malate/L-lactate dehydrogenase RC54_RS17750 PF17912 MalK OB fold domain RC54_RS17750 PF00005 ABC transporter RC54_RS17750 PF03459 TOBE domain RC54_RS17760 PF14785 Maltose transport system permease protein MalF P2 domain RC54_RS17760 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS17765 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS17785 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RC54_RS17785 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS17785 PF13296 Putative type VI secretion system Rhs element Vgr RC54_RS17790 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC54_RS17790 PF00034 Cytochrome c RC54_RS17795 PF05199 GMC oxidoreductase RC54_RS17795 PF00732 GMC oxidoreductase RC54_RS17800 PF13618 Gluconate 2-dehydrogenase subunit 3 RC54_RS17810 PF05987 Bacterial protein of unknown function (DUF898) RC54_RS17830 PF13411 MerR HTH family regulatory protein RC54_RS17835 PF00248 Aldo/keto reductase family RC54_RS17840 PF00484 Carbonic anhydrase RC54_RS17845 PF03783 Curli production assembly/transport component CsgG RC54_RS17855 PF05643 Putative bacterial lipoprotein (DUF799) RC54_RS17860 PF00072 Response regulator receiver domain RC54_RS17860 PF00158 Sigma-54 interaction domain RC54_RS17860 PF02954 Bacterial regulatory protein, Fis family RC54_RS17865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS17865 PF02743 Cache domain RC54_RS17865 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS17870 PF00083 Sugar (and other) transporter RC54_RS17875 PF01515 Phosphate acetyl/butaryl transferase RC54_RS17875 PF00390 Malic enzyme, N-terminal domain RC54_RS17875 PF03949 Malic enzyme, NAD binding domain RC54_RS17880 PF02769 AIR synthase related protein, C-terminal domain RC54_RS17880 PF00586 AIR synthase related protein, N-terminal domain RC54_RS17885 PF04608 Phosphatidylglycerophosphatase A RC54_RS17890 PF02464 Competence-damaged protein RC54_RS17895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RC54_RS17900 PF04011 LemA family RC54_RS17920 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RC54_RS17925 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS17925 PF05230 MASE2 domain RC54_RS17935 PF00689 Cation transporting ATPase, C-terminus RC54_RS17935 PF00690 Cation transporter/ATPase, N-terminus RC54_RS17945 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS17945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS17945 PF00360 Phytochrome region RC54_RS17945 PF08446 PAS fold RC54_RS17945 PF01590 GAF domain RC54_RS17950 PF01339 CheB methylesterase RC54_RS17955 PF01739 CheR methyltransferase, SAM binding domain RC54_RS17955 PF03705 CheR methyltransferase, all-alpha domain RC54_RS17960 PF00672 HAMP domain RC54_RS17960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS17960 PF00072 Response regulator receiver domain RC54_RS17960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RC54_RS17960 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS17960 PF01627 Hpt domain RC54_RS17975 PF08521 Two-component sensor kinase N-terminal RC54_RS17975 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS17975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS17980 PF00486 Transcriptional regulatory protein, C terminal RC54_RS17980 PF00072 Response regulator receiver domain RC54_RS17985 PF00593 TonB dependent receptor RC54_RS17985 PF07715 TonB-dependent Receptor Plug Domain RC54_RS17990 PF13640 2OG-Fe(II) oxygenase superfamily RC54_RS17990 PF18331 PKHD-type hydroxylase C-terminal domain RC54_RS17995 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS18000 PF00005 ABC transporter RC54_RS18015 PF00072 Response regulator receiver domain RC54_RS18015 PF00486 Transcriptional regulatory protein, C terminal RC54_RS18020 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS18025 PF01547 Bacterial extracellular solute-binding protein RC54_RS18030 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS18035 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS18040 PF00107 Zinc-binding dehydrogenase RC54_RS18040 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS18045 PF17912 MalK OB fold domain RC54_RS18045 PF00005 ABC transporter RC54_RS18050 PF12833 Helix-turn-helix domain RC54_RS18050 PF02311 AraC-like ligand binding domain RC54_RS18055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RC54_RS18055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RC54_RS18075 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RC54_RS18075 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS18075 PF13296 Putative type VI secretion system Rhs element Vgr RC54_RS18110 PF00929 Exonuclease RC54_RS18115 PF00075 RNase H RC54_RS18125 PF00753 Metallo-beta-lactamase superfamily RC54_RS18125 PF16123 Hydroxyacylglutathione hydrolase C-terminus RC54_RS18130 PF01464 Transglycosylase SLT domain RC54_RS18130 PF01476 LysM domain RC54_RS18135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS18135 PF00005 ABC transporter RC54_RS18140 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS18140 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS18145 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS18150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS18160 PF00270 DEAD/DEAH box helicase RC54_RS18160 PF00271 Helicase conserved C-terminal domain RC54_RS18190 PF03886 ABC-type transport auxiliary lipoprotein component RC54_RS18195 PF02470 MlaD protein RC54_RS18200 PF04403 Paraquat-inducible protein A RC54_RS18205 PF04403 Paraquat-inducible protein A RC54_RS18210 PF08502 LeuA allosteric (dimerisation) domain RC54_RS18210 PF00682 HMGL-like RC54_RS18220 PF00672 HAMP domain RC54_RS18220 PF02203 Tar ligand binding domain homologue RC54_RS18220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS18225 PF03781 Sulfatase-modifying factor enzyme 1 RC54_RS18225 PF12867 DinB superfamily RC54_RS18230 PF10017 Histidine-specific methyltransferase, SAM-dependent RC54_RS18235 PF00005 ABC transporter RC54_RS18235 PF00664 ABC transporter transmembrane region RC54_RS18240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RC54_RS18245 PF09335 SNARE associated Golgi protein RC54_RS18265 PF11862 Domain of unknown function (DUF3382) RC54_RS18265 PF02653 Branched-chain amino acid transport system / permease component RC54_RS18270 PF00005 ABC transporter RC54_RS18280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RC54_RS18280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RC54_RS18285 PF05853 beta-keto acid cleavage enzyme RC54_RS18290 PF00303 Thymidylate synthase RC54_RS18295 PF03060 Nitronate monooxygenase RC54_RS18300 PF02321 Outer membrane efflux protein RC54_RS18305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS18310 PF00535 Glycosyl transferase family 2 RC54_RS18315 PF04349 Periplasmic glucan biosynthesis protein, MdoG RC54_RS18320 PF00186 Dihydrofolate reductase RC54_RS18325 PF01276 Orn/Lys/Arg decarboxylase, major domain RC54_RS18325 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RC54_RS18325 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RC54_RS18340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS18340 PF03466 LysR substrate binding domain RC54_RS18345 PF01022 Bacterial regulatory protein, arsR family RC54_RS18350 PF02040 Arsenical pump membrane protein RC54_RS18355 PF03960 ArsC family RC54_RS18360 PF00692 dUTPase RC54_RS18365 PF14581 SseB protein C-terminal domain RC54_RS18365 PF07179 SseB protein N-terminal domain RC54_RS18395 PF00271 Helicase conserved C-terminal domain RC54_RS18395 PF00270 DEAD/DEAH box helicase RC54_RS18395 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RC54_RS18395 PF04408 Helicase associated domain (HA2) RC54_RS18395 PF11898 Domain of unknown function (DUF3418) RC54_RS18400 PF00696 Amino acid kinase family RC54_RS18400 PF00583 Acetyltransferase (GNAT) family RC54_RS18405 PF04362 Bacterial Fe(2+) trafficking RC54_RS18410 PF05193 Peptidase M16 inactive domain RC54_RS18410 PF00675 Insulinase (Peptidase family M16) RC54_RS18420 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RC54_RS18425 PF00999 Sodium/hydrogen exchanger family RC54_RS18425 PF02254 TrkA-N domain RC54_RS18430 PF13404 AsnC-type helix-turn-helix domain RC54_RS18430 PF01037 Lrp/AsnC ligand binding domain RC54_RS18435 PF13458 Periplasmic binding protein RC54_RS18470 PF00589 Phage integrase family RC54_RS18490 PF03958 Bacterial type II/III secretion system short domain RC54_RS18490 PF00263 Bacterial type II and III secretion system protein RC54_RS18495 PF05707 Zonular occludens toxin (Zot) RC54_RS18595 PF02203 Tar ligand binding domain homologue RC54_RS18595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS18595 PF00672 HAMP domain RC54_RS18605 PF00295 Glycosyl hydrolases family 28 RC54_RS18610 PF02667 Short chain fatty acid transporter RC54_RS18615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS18615 PF00672 HAMP domain RC54_RS18615 PF02203 Tar ligand binding domain homologue RC54_RS18620 PF00672 HAMP domain RC54_RS18620 PF02203 Tar ligand binding domain homologue RC54_RS18620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS18625 PF01810 LysE type translocator RC54_RS18645 PF02203 Tar ligand binding domain homologue RC54_RS18645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS18645 PF00672 HAMP domain RC54_RS18665 PF01590 GAF domain RC54_RS18665 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS18665 PF00563 EAL domain RC54_RS18665 PF00360 Phytochrome region RC54_RS18670 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RC54_RS18675 PF11940 Domain of unknown function (DUF3458) Ig-like fold RC54_RS18675 PF01433 Peptidase family M1 domain RC54_RS18675 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RC54_RS18695 PF00107 Zinc-binding dehydrogenase RC54_RS18695 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS18700 PF00892 EamA-like transporter family RC54_RS18705 PF05872 Bacterial protein of unknown function (DUF853) RC54_RS18710 PF01709 Transcriptional regulator RC54_RS18715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RC54_RS18715 PF02843 Phosphoribosylglycinamide synthetase, C domain RC54_RS18715 PF02844 Phosphoribosylglycinamide synthetase, N domain RC54_RS18720 PF00924 Mechanosensitive ion channel RC54_RS18720 PF05552 Conserved TM helix RC54_RS18725 PF01218 Coproporphyrinogen III oxidase RC54_RS18730 PF01467 Cytidylyltransferase-like RC54_RS18740 PF02590 Predicted SPOUT methyltransferase RC54_RS18745 PF02545 Maf-like protein RC54_RS18750 PF00575 S1 RNA binding domain RC54_RS18750 PF10150 Ribonuclease E/G family RC54_RS18765 PF00005 ABC transporter RC54_RS18765 PF00664 ABC transporter transmembrane region RC54_RS18775 PF08437 Glycosyl transferase family 8 C-terminal RC54_RS18775 PF01501 Glycosyl transferase family 8 RC54_RS18780 PF08437 Glycosyl transferase family 8 C-terminal RC54_RS18780 PF01501 Glycosyl transferase family 8 RC54_RS18790 PF01336 OB-fold nucleic acid binding domain RC54_RS18790 PF02811 PHP domain RC54_RS18790 PF14579 Helix-hairpin-helix motif RC54_RS18790 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RC54_RS18790 PF07733 Bacterial DNA polymerase III alpha NTPase domain RC54_RS18795 PF17773 UPF0176 acylphosphatase like domain RC54_RS18800 PF03358 NADPH-dependent FMN reductase RC54_RS18805 PF17954 Quercetinase C-terminal cupin domain RC54_RS18805 PF02678 Pirin RC54_RS18810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS18810 PF03466 LysR substrate binding domain RC54_RS18815 PF00749 tRNA synthetases class I (E and Q), catalytic domain RC54_RS18820 PF00271 Helicase conserved C-terminal domain RC54_RS18820 PF00270 DEAD/DEAH box helicase RC54_RS18825 PF01557 Fumarylacetoacetate (FAA) hydrolase family RC54_RS18835 PF02685 Glucokinase RC54_RS18835 PF01418 Helix-turn-helix domain, rpiR family RC54_RS18835 PF01380 SIS domain RC54_RS18845 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RC54_RS18860 PF00155 Aminotransferase class I and II RC54_RS18865 PF01029 NusB family RC54_RS18870 PF00885 6,7-dimethyl-8-ribityllumazine synthase RC54_RS18875 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RC54_RS18875 PF00925 GTP cyclohydrolase II RC54_RS18880 PF01207 Dihydrouridine synthase (Dus) RC54_RS18935 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) RC54_RS18940 PF04865 Baseplate J-like protein RC54_RS18985 PF17482 Phage tail sheath C-terminal domain RC54_RS18985 PF04984 Phage tail sheath protein subtilisin-like domain RC54_RS19015 PF01343 Peptidase family S49 RC54_RS19095 PF02195 ParB-like nuclease domain RC54_RS19095 PF17762 HTH domain found in ParB protein RC54_RS19120 PF00009 Elongation factor Tu GTP binding domain RC54_RS19120 PF03144 Elongation factor Tu domain 2 RC54_RS19120 PF00679 Elongation factor G C-terminus RC54_RS19125 PF09157 Pseudouridine synthase II TruB, C-terminal RC54_RS19125 PF16198 tRNA pseudouridylate synthase B C-terminal domain RC54_RS19125 PF01509 TruB family pseudouridylate synthase (N terminal domain) RC54_RS19130 PF02033 Ribosome-binding factor A RC54_RS19135 PF08364 Bacterial translation initiation factor IF-2 associated region RC54_RS19135 PF04760 Translation initiation factor IF-2, N-terminal region RC54_RS19135 PF11987 Translation-initiation factor 2 RC54_RS19135 PF00009 Elongation factor Tu GTP binding domain RC54_RS19140 PF13184 NusA-like KH domain RC54_RS19140 PF08529 NusA N-terminal domain RC54_RS19145 PF17384 RimP C-terminal SH3 domain RC54_RS19145 PF02576 RimP N-terminal domain RC54_RS19150 PF01479 S4 domain RC54_RS19150 PF00849 RNA pseudouridylate synthase RC54_RS19155 PF04079 Segregation and condensation complex subunit ScpB RC54_RS19160 PF03707 Bacterial signalling protein N terminal repeat RC54_RS19160 PF00563 EAL domain RC54_RS19160 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS19165 PF01645 Conserved region in glutamate synthase RC54_RS19170 PF01206 Sulfurtransferase TusA RC54_RS19175 PF00293 NUDIX domain RC54_RS19180 PF02272 DHHA1 domain RC54_RS19180 PF01411 tRNA synthetases class II (A) RC54_RS19180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RC54_RS19190 PF03009 Glycerophosphoryl diester phosphodiesterase family RC54_RS19200 PF06580 Histidine kinase RC54_RS19205 PF00072 Response regulator receiver domain RC54_RS19205 PF04397 LytTr DNA-binding domain RC54_RS19210 PF00749 tRNA synthetases class I (E and Q), catalytic domain RC54_RS19210 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RC54_RS19220 PF01544 CorA-like Mg2+ transporter protein RC54_RS19230 PF00860 Permease family RC54_RS19235 PF03992 Antibiotic biosynthesis monooxygenase RC54_RS19250 PF08411 Exonuclease C-terminal RC54_RS19250 PF00929 Exonuclease RC54_RS19260 PF03551 Transcriptional regulator PadR-like family RC54_RS19270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS19270 PF09317 Domain of unknown function (DUF1974) RC54_RS19270 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS19270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS19275 PF04228 Putative neutral zinc metallopeptidase RC54_RS19285 PF07690 Major Facilitator Superfamily RC54_RS19290 PF07690 Major Facilitator Superfamily RC54_RS19295 PF14710 Respiratory nitrate reductase alpha N-terminal RC54_RS19295 PF00384 Molybdopterin oxidoreductase RC54_RS19295 PF01568 Molydopterin dinucleotide binding domain RC54_RS19300 PF14711 Respiratory nitrate reductase beta C-terminal RC54_RS19300 PF13247 4Fe-4S dicluster domain RC54_RS19305 PF02613 Nitrate reductase delta subunit RC54_RS19310 PF02665 Nitrate reductase gamma subunit RC54_RS19315 PF00639 PPIC-type PPIASE domain RC54_RS19315 PF09312 SurA N-terminal domain RC54_RS19320 PF06463 Molybdenum Cofactor Synthesis C RC54_RS19320 PF04055 Radical SAM superfamily RC54_RS19325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS19325 PF07730 Histidine kinase RC54_RS19325 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RC54_RS19325 PF00672 HAMP domain RC54_RS19330 PF00072 Response regulator receiver domain RC54_RS19330 PF00196 Bacterial regulatory proteins, luxR family RC54_RS19360 PF07963 Prokaryotic N-terminal methylation motif RC54_RS19360 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor RC54_RS19370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RC54_RS19370 PF01872 RibD C-terminal domain RC54_RS19375 PF00677 Lumazine binding domain RC54_RS19390 PF13396 Phospholipase_D-nuclease N-terminal RC54_RS19390 PF13091 PLD-like domain RC54_RS19395 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS19395 PF06715 Gp5 C-terminal repeat (3 copies) RC54_RS19400 PF01053 Cys/Met metabolism PLP-dependent enzyme RC54_RS19405 PF02146 Sir2 family RC54_RS19415 PF00474 Sodium:solute symporter family RC54_RS19420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS19420 PF02203 Tar ligand binding domain homologue RC54_RS19420 PF00672 HAMP domain RC54_RS19430 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS19435 PF00005 ABC transporter RC54_RS19445 PF02515 CoA-transferase family III RC54_RS19450 PF13662 Toprim domain RC54_RS19450 PF02132 RecR protein RC54_RS19460 PF02575 YbaB/EbfC DNA-binding family RC54_RS19465 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RC54_RS19465 PF12169 DNA polymerase III subunits gamma and tau domain III RC54_RS19465 PF12170 DNA polymerase III tau subunit V interacting with alpha RC54_RS19470 PF05230 MASE2 domain RC54_RS19470 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS19480 PF00294 pfkB family carbohydrate kinase RC54_RS19485 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RC54_RS19485 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RC54_RS19485 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RC54_RS19490 PF18073 Rubredoxin metal binding domain RC54_RS19500 PF00216 Bacterial DNA-binding protein RC54_RS19505 PF00575 S1 RNA binding domain RC54_RS19510 PF02224 Cytidylate kinase RC54_RS19520 PF01842 ACT domain RC54_RS19520 PF00800 Prephenate dehydratase RC54_RS19520 PF01817 Chorismate mutase type II RC54_RS19525 PF00266 Aminotransferase class-V RC54_RS19530 PF00521 DNA gyrase/topoisomerase IV, subunit A RC54_RS19530 PF03989 DNA gyrase C-terminal domain, beta-propeller RC54_RS19535 PF00691 OmpA family RC54_RS19545 PF13419 Haloacid dehalogenase-like hydrolase RC54_RS19580 PF00550 Phosphopantetheine attachment site RC54_RS19590 PF13193 AMP-binding enzyme C-terminal domain RC54_RS19590 PF00501 AMP-binding enzyme RC54_RS19605 PF00221 Aromatic amino acid lyase RC54_RS19630 PF00109 Beta-ketoacyl synthase, N-terminal domain RC54_RS19630 PF02801 Beta-ketoacyl synthase, C-terminal domain RC54_RS19645 PF00109 Beta-ketoacyl synthase, N-terminal domain RC54_RS19645 PF02801 Beta-ketoacyl synthase, C-terminal domain RC54_RS19655 PF01648 4'-phosphopantetheinyl transferase superfamily RC54_RS19665 PF00465 Iron-containing alcohol dehydrogenase RC54_RS19670 PF04444 Catechol dioxygenase N terminus RC54_RS19670 PF00775 Dioxygenase RC54_RS19675 PF03466 LysR substrate binding domain RC54_RS19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS19690 PF04244 Deoxyribodipyrimidine photo-lyase-related protein RC54_RS19695 PF00072 Response regulator receiver domain RC54_RS19700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS19700 PF09456 RcsC Alpha-Beta-Loop (ABL) RC54_RS19700 PF00072 Response regulator receiver domain RC54_RS19700 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS19710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS19710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RC54_RS19710 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS19710 PF00672 HAMP domain RC54_RS19710 PF01627 Hpt domain RC54_RS19710 PF00072 Response regulator receiver domain RC54_RS19720 PF01584 CheW-like domain RC54_RS19720 PF00072 Response regulator receiver domain RC54_RS19730 PF12792 CSS motif domain associated with EAL RC54_RS19730 PF00563 EAL domain RC54_RS19735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS19735 PF08447 PAS fold RC54_RS19740 PF13188 PAS domain RC54_RS19740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS19740 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS19740 PF08448 PAS fold RC54_RS19740 PF00072 Response regulator receiver domain RC54_RS19745 PF02954 Bacterial regulatory protein, Fis family RC54_RS19745 PF00072 Response regulator receiver domain RC54_RS19745 PF00158 Sigma-54 interaction domain RC54_RS19750 PF00196 Bacterial regulatory proteins, luxR family RC54_RS19750 PF00072 Response regulator receiver domain RC54_RS19755 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS19755 PF17151 Periplasmic sensor domain RC54_RS19780 PF00072 Response regulator receiver domain RC54_RS19780 PF00486 Transcriptional regulatory protein, C terminal RC54_RS19795 PF00672 HAMP domain RC54_RS19795 PF02203 Tar ligand binding domain homologue RC54_RS19795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS19800 PF07690 Major Facilitator Superfamily RC54_RS19805 PF00072 Response regulator receiver domain RC54_RS19805 PF00486 Transcriptional regulatory protein, C terminal RC54_RS19810 PF00072 Response regulator receiver domain RC54_RS19815 PF00486 Transcriptional regulatory protein, C terminal RC54_RS19815 PF00072 Response regulator receiver domain RC54_RS19820 PF18073 Rubredoxin metal binding domain RC54_RS19825 PF00083 Sugar (and other) transporter RC54_RS19825 PF07690 Major Facilitator Superfamily RC54_RS19835 PF01261 Xylose isomerase-like TIM barrel RC54_RS19835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RC54_RS19845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RC54_RS19850 PF09339 IclR helix-turn-helix domain RC54_RS19850 PF01614 Bacterial transcriptional regulator RC54_RS19855 PF09339 IclR helix-turn-helix domain RC54_RS19855 PF01614 Bacterial transcriptional regulator RC54_RS19860 PF00881 Nitroreductase family RC54_RS19865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS19865 PF03466 LysR substrate binding domain RC54_RS19875 PF01979 Amidohydrolase family RC54_RS19880 PF17645 Arylmalonate decarboxylase RC54_RS19885 PF00005 ABC transporter RC54_RS19890 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS19900 PF07729 FCD domain RC54_RS19900 PF00392 Bacterial regulatory proteins, gntR family RC54_RS19905 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS19930 PF06715 Gp5 C-terminal repeat (3 copies) RC54_RS19930 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS19950 PF00072 Response regulator receiver domain RC54_RS19950 PF00486 Transcriptional regulatory protein, C terminal RC54_RS19955 PF13493 Domain of unknown function (DUF4118) RC54_RS19955 PF13492 GAF domain RC54_RS19955 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS19955 PF02702 Osmosensitive K+ channel His kinase sensor domain RC54_RS19955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS19960 PF02669 K+-transporting ATPase, c chain RC54_RS19970 PF03814 Potassium-transporting ATPase A subunit RC54_RS19980 PF00563 EAL domain RC54_RS19980 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS19980 PF03707 Bacterial signalling protein N terminal repeat RC54_RS19990 PF00296 Luciferase-like monooxygenase RC54_RS19995 PF00107 Zinc-binding dehydrogenase RC54_RS19995 PF16884 N-terminal domain of oxidoreductase RC54_RS20000 PF00440 Bacterial regulatory proteins, tetR family RC54_RS20000 PF16925 Tetracyclin repressor-like, C-terminal domain RC54_RS20010 PF01965 DJ-1/PfpI family RC54_RS20010 PF12833 Helix-turn-helix domain RC54_RS20015 PF00149 Calcineurin-like phosphoesterase RC54_RS20025 PF03976 Polyphosphate kinase 2 (PPK2) RC54_RS20030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20030 PF03466 LysR substrate binding domain RC54_RS20035 PF17912 MalK OB fold domain RC54_RS20035 PF00005 ABC transporter RC54_RS20040 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS20045 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS20050 PF13416 Bacterial extracellular solute-binding protein RC54_RS20055 PF01040 UbiA prenyltransferase family RC54_RS20060 PF05724 Thiopurine S-methyltransferase (TPMT) RC54_RS20065 PF12441 CopG antitoxin of type II toxin-antitoxin system RC54_RS20080 PF01551 Peptidase family M23 RC54_RS20080 PF01476 LysM domain RC54_RS20085 PF14748 Pyrroline-5-carboxylate reductase dimerisation RC54_RS20085 PF03807 NADP oxidoreductase coenzyme F420-dependent RC54_RS20090 PF01168 Alanine racemase, N-terminal domain RC54_RS20095 PF00437 Type II/IV secretion system protein RC54_RS20100 PF00255 Glutathione peroxidase RC54_RS20110 PF00563 EAL domain RC54_RS20110 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS20110 PF03707 Bacterial signalling protein N terminal repeat RC54_RS20115 PF00158 Sigma-54 interaction domain RC54_RS20115 PF02954 Bacterial regulatory protein, Fis family RC54_RS20115 PF01590 GAF domain RC54_RS20120 PF03466 LysR substrate binding domain RC54_RS20120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RC54_RS20140 PF03480 Bacterial extracellular solute-binding protein, family 7 RC54_RS20150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RC54_RS20150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RC54_RS20155 PF00501 AMP-binding enzyme RC54_RS20155 PF13193 AMP-binding enzyme C-terminal domain RC54_RS20160 PF00375 Sodium:dicarboxylate symporter family RC54_RS20165 PF05506 Domain of unknown function (DUF756) RC54_RS20165 PF04185 Phosphoesterase family RC54_RS20170 PF02754 Cysteine-rich domain RC54_RS20170 PF13183 4Fe-4S dicluster domain RC54_RS20175 PF01565 FAD binding domain RC54_RS20180 PF02913 FAD linked oxidases, C-terminal domain RC54_RS20180 PF01565 FAD binding domain RC54_RS20185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20185 PF03466 LysR substrate binding domain RC54_RS20190 PF02913 FAD linked oxidases, C-terminal domain RC54_RS20190 PF01565 FAD binding domain RC54_RS20195 PF01923 Cobalamin adenosyltransferase RC54_RS20200 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RC54_RS20200 PF02779 Transketolase, pyrimidine binding domain RC54_RS20200 PF02780 Transketolase, C-terminal domain RC54_RS20205 PF00348 Polyprenyl synthetase RC54_RS20210 PF02609 Exonuclease VII small subunit RC54_RS20225 PF00581 Rhodanese-like domain RC54_RS20230 PF01584 CheW-like domain RC54_RS20230 PF02895 Signal transducing histidine kinase, homodimeric domain RC54_RS20230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS20230 PF01627 Hpt domain RC54_RS20230 PF07194 P2 response regulator binding domain RC54_RS20235 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RC54_RS20235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS20245 PF00301 Rubredoxin RC54_RS20255 PF00202 Aminotransferase class-III RC54_RS20260 PF01521 Iron-sulphur cluster biosynthesis RC54_RS20275 PF02774 Semialdehyde dehydrogenase, dimerisation domain RC54_RS20275 PF01118 Semialdehyde dehydrogenase, NAD binding domain RC54_RS20280 PF00380 Ribosomal protein S9/S16 RC54_RS20285 PF00572 Ribosomal protein L13 RC54_RS20295 PF03232 Ubiquinone biosynthesis protein COQ7 RC54_RS20300 PF01979 Amidohydrolase family RC54_RS20305 PF00005 ABC transporter RC54_RS20310 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS20315 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS20320 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS20325 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RC54_RS20325 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RC54_RS20330 PF03466 LysR substrate binding domain RC54_RS20330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20335 PF00664 ABC transporter transmembrane region RC54_RS20335 PF00005 ABC transporter RC54_RS20340 PF03061 Thioesterase superfamily RC54_RS20345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS20345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC54_RS20370 PF00501 AMP-binding enzyme RC54_RS20370 PF13193 AMP-binding enzyme C-terminal domain RC54_RS20375 PF01568 Molydopterin dinucleotide binding domain RC54_RS20375 PF00384 Molybdopterin oxidoreductase RC54_RS20375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RC54_RS20390 PF01546 Peptidase family M20/M25/M40 RC54_RS20390 PF07687 Peptidase dimerisation domain RC54_RS20415 PF03466 LysR substrate binding domain RC54_RS20415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20425 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS20430 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS20435 PF00005 ABC transporter RC54_RS20445 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RC54_RS20445 PF08666 SAF domain RC54_RS20460 PF08450 SMP-30/Gluconolactonase/LRE-like region RC54_RS20465 PF09411 Lipid A 3-O-deacylase (PagL) RC54_RS20500 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS20510 PF03562 MltA specific insert domain RC54_RS20510 PF06725 3D domain RC54_RS20515 PF04379 ApaG domain RC54_RS20520 PF00834 Ribulose-phosphate 3 epimerase family RC54_RS20525 PF13419 Haloacid dehalogenase-like hydrolase RC54_RS20530 PF00425 chorismate binding enzyme RC54_RS20530 PF04715 Anthranilate synthase component I, N terminal region RC54_RS20535 PF00117 Glutamine amidotransferase class-I RC54_RS20540 PF00591 Glycosyl transferase family, a/b domain RC54_RS20540 PF02885 Glycosyl transferase family, helical bundle domain RC54_RS20545 PF00218 Indole-3-glycerol phosphate synthase RC54_RS20550 PF07690 Major Facilitator Superfamily RC54_RS20555 PF03109 ABC1 family RC54_RS20570 PF01209 ubiE/COQ5 methyltransferase family RC54_RS20590 PF09335 SNARE associated Golgi protein RC54_RS20595 PF00585 C-terminal regulatory domain of Threonine dehydratase RC54_RS20595 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS20600 PF14489 QueF-like protein RC54_RS20600 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RC54_RS20605 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RC54_RS20610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RC54_RS20615 PF02603 HPr Serine kinase N terminus RC54_RS20615 PF07475 HPr Serine kinase C-terminal domain RC54_RS20620 PF03668 P-loop ATPase protein family RC54_RS20625 PF10576 Iron-sulfur binding domain of endonuclease III RC54_RS20625 PF00633 Helix-hairpin-helix motif RC54_RS20625 PF14815 NUDIX domain RC54_RS20625 PF00730 HhH-GPD superfamily base excision DNA repair protein RC54_RS20630 PF06827 Zinc finger found in FPG and IleRS RC54_RS20630 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RC54_RS20630 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RC54_RS20640 PF03550 Outer membrane lipoprotein LolB RC54_RS20645 PF00288 GHMP kinases N terminal domain RC54_RS20645 PF08544 GHMP kinases C terminal RC54_RS20655 PF14572 Phosphoribosyl synthetase-associated domain RC54_RS20655 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RC54_RS20660 PF14693 Ribosomal protein TL5, C-terminal domain RC54_RS20660 PF01386 Ribosomal L25p family RC54_RS20670 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RC54_RS20670 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS20675 PF04898 Glutamate synthase central domain RC54_RS20675 PF01645 Conserved region in glutamate synthase RC54_RS20675 PF01493 GXGXG motif RC54_RS20675 PF00310 Glutamine amidotransferases class-II RC54_RS20685 PF03741 Integral membrane protein TerC family RC54_RS20695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20695 PF03466 LysR substrate binding domain RC54_RS20700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20700 PF03466 LysR substrate binding domain RC54_RS20705 PF06779 Uncharacterised MFS-type transporter YbfB RC54_RS20710 PF01048 Phosphorylase superfamily RC54_RS20710 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RC54_RS20715 PF17763 Glutaminase/Asparaginase C-terminal domain RC54_RS20715 PF00710 Asparaginase, N-terminal RC54_RS20720 PF04349 Periplasmic glucan biosynthesis protein, MdoG RC54_RS20735 PF00873 AcrB/AcrD/AcrF family RC54_RS20745 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain RC54_RS20745 PF05594 Haemagluttinin repeat RC54_RS20745 PF13018 Extended Signal Peptide of Type V secretion system RC54_RS20745 PF13332 Hemagglutinin repeat RC54_RS20745 PF05860 haemagglutination activity domain RC54_RS20750 PF17287 POTRA domain RC54_RS20750 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RC54_RS20750 PF08479 POTRA domain, ShlB-type RC54_RS20755 PF00665 Integrase core domain RC54_RS20760 PF00665 Integrase core domain RC54_RS20760 PF13276 HTH-like domain RC54_RS20770 PF00436 Single-strand binding protein family RC54_RS20775 PF07690 Major Facilitator Superfamily RC54_RS20780 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RC54_RS20785 PF17760 UvrA interaction domain RC54_RS20785 PF17755 UvrA DNA-binding domain RC54_RS20790 PF05721 Phytanoyl-CoA dioxygenase (PhyH) RC54_RS20795 PF00672 HAMP domain RC54_RS20795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS20795 PF02203 Tar ligand binding domain homologue RC54_RS20800 PF02203 Tar ligand binding domain homologue RC54_RS20800 PF00672 HAMP domain RC54_RS20800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS20805 PF02254 TrkA-N domain RC54_RS20805 PF02080 TrkA-C domain RC54_RS20805 PF00999 Sodium/hydrogen exchanger family RC54_RS20810 PF00571 CBS domain RC54_RS20810 PF01380 SIS domain RC54_RS20825 PF03968 OstA-like protein RC54_RS20830 PF00005 ABC transporter RC54_RS20830 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS20835 PF00309 Sigma-54 factor, Activator interacting domain (AID) RC54_RS20835 PF04963 Sigma-54 factor, core binding domain RC54_RS20835 PF04552 Sigma-54, DNA binding domain RC54_RS20840 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RC54_RS20845 PF00462 Glutaredoxin RC54_RS20850 PF02441 Flavoprotein RC54_RS20860 PF17831 Pyruvate dehydrogenase E1 component middle domain RC54_RS20860 PF00456 Transketolase, thiamine diphosphate binding domain RC54_RS20865 PF01037 Lrp/AsnC ligand binding domain RC54_RS20875 PF06445 GyrI-like small molecule binding domain RC54_RS20885 PF01494 FAD binding domain RC54_RS20890 PF12833 Helix-turn-helix domain RC54_RS20890 PF02311 AraC-like ligand binding domain RC54_RS20895 PF09339 IclR helix-turn-helix domain RC54_RS20895 PF01614 Bacterial transcriptional regulator RC54_RS20900 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal RC54_RS20900 PF00775 Dioxygenase RC54_RS20910 PF10397 Adenylosuccinate lyase C-terminus RC54_RS20910 PF00206 Lyase RC54_RS20915 PF02627 Carboxymuconolactone decarboxylase family RC54_RS20920 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ RC54_RS20925 PF04221 RelB antitoxin RC54_RS20935 PF02525 Flavodoxin-like fold RC54_RS20940 PF03466 LysR substrate binding domain RC54_RS20940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20945 PF13458 Periplasmic binding protein RC54_RS20950 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS20950 PF00175 Oxidoreductase NAD-binding domain RC54_RS20955 PF00355 Rieske [2Fe-2S] domain RC54_RS20960 PF12802 MarR family RC54_RS20965 PF03466 LysR substrate binding domain RC54_RS20965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS20970 PF13458 Periplasmic binding protein RC54_RS20975 PF00355 Rieske [2Fe-2S] domain RC54_RS20980 PF00175 Oxidoreductase NAD-binding domain RC54_RS20980 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS20985 PF00005 ABC transporter RC54_RS20990 PF00005 ABC transporter RC54_RS20990 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS21005 PF02803 Thiolase, C-terminal domain RC54_RS21005 PF00108 Thiolase, N-terminal domain RC54_RS21010 PF01144 Coenzyme A transferase RC54_RS21015 PF01144 Coenzyme A transferase RC54_RS21020 PF09339 IclR helix-turn-helix domain RC54_RS21020 PF01614 Bacterial transcriptional regulator RC54_RS21025 PF13609 Gram-negative porin RC54_RS21030 PF13458 Periplasmic binding protein RC54_RS21035 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS21040 PF00501 AMP-binding enzyme RC54_RS21045 PF00108 Thiolase, N-terminal domain RC54_RS21045 PF02803 Thiolase, C-terminal domain RC54_RS21050 PF00106 short chain dehydrogenase RC54_RS21070 PF00005 ABC transporter RC54_RS21070 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS21075 PF00005 ABC transporter RC54_RS21080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS21080 PF12806 Acetyl-CoA dehydrogenase C-terminal like RC54_RS21080 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS21080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS21085 PF12802 MarR family RC54_RS21095 PF00672 HAMP domain RC54_RS21095 PF02203 Tar ligand binding domain homologue RC54_RS21095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS21115 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS21140 PF06761 Intracellular multiplication and human macrophage-killing RC54_RS21140 PF14331 ImcF-related N-terminal domain RC54_RS21140 PF06744 Type VI secretion protein IcmF C-terminal RC54_RS21150 PF00691 OmpA family RC54_RS21160 PF00004 ATPase family associated with various cellular activities (AAA) RC54_RS21160 PF07724 AAA domain (Cdc48 subfamily) RC54_RS21160 PF17871 AAA lid domain RC54_RS21160 PF10431 C-terminal, D2-small domain, of ClpB protein RC54_RS21170 PF05947 Type VI secretion system, TssF RC54_RS21180 PF05638 Type VI secretion system effector, Hcp RC54_RS21185 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath RC54_RS21190 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 RC54_RS21205 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE RC54_RS21215 PF06715 Gp5 C-terminal repeat (3 copies) RC54_RS21215 PF04717 Type VI secretion system, phage-baseplate injector RC54_RS21220 PF00182 Chitinase class I RC54_RS21235 PF18381 YcaO cyclodehydratase C-terminal domain RC54_RS21235 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RC54_RS21240 PF00291 Pyridoxal-phosphate dependent enzyme RC54_RS21240 PF13291 ACT domain RC54_RS21245 PF02423 Ornithine cyclodeaminase/mu-crystallin family RC54_RS21250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS21260 PF04386 Stringent starvation protein B RC54_RS21265 PF02798 Glutathione S-transferase, N-terminal domain RC54_RS21265 PF00043 Glutathione S-transferase, C-terminal domain RC54_RS21270 PF02167 Cytochrome C1 family RC54_RS21275 PF00032 Cytochrome b(C-terminal)/b6/petD RC54_RS21275 PF00033 Cytochrome b/b6/petB RC54_RS21280 PF00355 Rieske [2Fe-2S] domain RC54_RS21280 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RC54_RS21285 PF01741 Large-conductance mechanosensitive channel, MscL RC54_RS21290 PF01784 NIF3 (NGG1p interacting factor 3) RC54_RS21295 PF13180 PDZ domain RC54_RS21295 PF17820 PDZ domain RC54_RS21305 PF00902 Sec-independent protein translocase protein (TatC) RC54_RS21310 PF02416 mttA/Hcf106 family RC54_RS21315 PF02416 mttA/Hcf106 family RC54_RS21325 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RC54_RS21330 PF01502 Phosphoribosyl-AMP cyclohydrolase RC54_RS21335 PF00977 Histidine biosynthesis protein RC54_RS21340 PF00977 Histidine biosynthesis protein RC54_RS21345 PF00117 Glutamine amidotransferase class-I RC54_RS21350 PF00475 Imidazoleglycerol-phosphate dehydratase RC54_RS21355 PF00155 Aminotransferase class I and II RC54_RS21360 PF01555 DNA methylase RC54_RS21365 PF00815 Histidinol dehydrogenase RC54_RS21370 PF01634 ATP phosphoribosyltransferase RC54_RS21375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RC54_RS21380 PF01722 BolA-like protein RC54_RS21385 PF01061 ABC-2 type transporter RC54_RS21390 PF00005 ABC transporter RC54_RS21405 PF04333 MlaA lipoprotein RC54_RS21410 PF02470 MlaD protein RC54_RS21415 PF02405 Permease MlaE RC54_RS21420 PF00005 ABC transporter RC54_RS21425 PF01926 50S ribosome-binding GTPase RC54_RS21425 PF06071 Protein of unknown function (DUF933) RC54_RS21430 PF13175 AAA ATPase domain RC54_RS21440 PF03466 LysR substrate binding domain RC54_RS21440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS21445 PF03746 LamB/YcsF family RC54_RS21450 PF00364 Biotin-requiring enzyme RC54_RS21455 PF00289 Biotin carboxylase, N-terminal domain RC54_RS21455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC54_RS21455 PF02785 Biotin carboxylase C-terminal domain RC54_RS21465 PF02626 Carboxyltransferase domain, subdomain A and B RC54_RS21490 PF00005 ABC transporter RC54_RS21495 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS21495 PF00005 ABC transporter RC54_RS21505 PF01575 MaoC like domain RC54_RS21505 PF00171 Aldehyde dehydrogenase family RC54_RS21510 PF13458 Periplasmic binding protein RC54_RS21520 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS21525 PF05138 Phenylacetic acid catabolic protein RC54_RS21530 PF06243 Phenylacetic acid degradation B RC54_RS21535 PF05138 Phenylacetic acid catabolic protein RC54_RS21540 PF01883 Iron-sulfur cluster assembly protein RC54_RS21545 PF00970 Oxidoreductase FAD-binding domain RC54_RS21545 PF00111 2Fe-2S iron-sulfur cluster binding domain RC54_RS21545 PF00175 Oxidoreductase NAD-binding domain RC54_RS21550 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS21555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RC54_RS21555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RC54_RS21555 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RC54_RS21560 PF03061 Thioesterase superfamily RC54_RS21565 PF14535 AMP-binding enzyme C-terminal domain RC54_RS21565 PF00501 AMP-binding enzyme RC54_RS21570 PF02803 Thiolase, C-terminal domain RC54_RS21570 PF00108 Thiolase, N-terminal domain RC54_RS21575 PF00378 Enoyl-CoA hydratase/isomerase RC54_RS21585 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS21595 PF00037 4Fe-4S binding domain RC54_RS21600 PF01467 Cytidylyltransferase-like RC54_RS21610 PF05193 Peptidase M16 inactive domain RC54_RS21620 PF05193 Peptidase M16 inactive domain RC54_RS21620 PF00675 Insulinase (Peptidase family M16) RC54_RS21625 PF00448 SRP54-type protein, GTPase domain RC54_RS21625 PF02881 SRP54-type protein, helical bundle domain RC54_RS21630 PF00005 ABC transporter RC54_RS21635 PF18075 FtsX extracellular domain RC54_RS21645 PF04542 Sigma-70 region 2 RC54_RS21645 PF00140 Sigma-70 factor, region 1.2 RC54_RS21645 PF04545 Sigma-70, region 4 RC54_RS21650 PF02630 SCO1/SenC RC54_RS21655 PF01040 UbiA prenyltransferase family RC54_RS21660 PF02628 Cytochrome oxidase assembly protein RC54_RS21680 PF00510 Cytochrome c oxidase subunit III RC54_RS21690 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 RC54_RS21695 PF00115 Cytochrome C and Quinol oxidase polypeptide I RC54_RS21700 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RC54_RS21700 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RC54_RS21710 PF08241 Methyltransferase domain RC54_RS21715 PF00156 Phosphoribosyl transferase domain RC54_RS21720 PF00588 SpoU rRNA Methylase family RC54_RS21725 PF00005 ABC transporter RC54_RS21735 PF04392 ABC transporter substrate binding protein RC54_RS21750 PF04314 Copper chaperone PCu(A)C RC54_RS21755 PF01467 Cytidylyltransferase-like RC54_RS21770 PF13458 Periplasmic binding protein RC54_RS21785 PF06508 Queuosine biosynthesis protein QueC RC54_RS21800 PF17092 Penicillin-binding protein OB-like domain RC54_RS21800 PF00905 Penicillin binding protein transpeptidase domain RC54_RS21800 PF00912 Transglycosylase RC54_RS21825 PF07660 Secretin and TonB N terminus short domain RC54_RS21825 PF11741 AMIN domain RC54_RS21825 PF03958 Bacterial type II/III secretion system short domain RC54_RS21825 PF00263 Bacterial type II and III secretion system protein RC54_RS21830 PF01761 3-dehydroquinate synthase RC54_RS21835 PF01966 HD domain RC54_RS21835 PF13286 Phosphohydrolase-associated domain RC54_RS21845 PF17674 HHH domain RC54_RS21845 PF00575 S1 RNA binding domain RC54_RS21845 PF09371 Tex-like protein N-terminal domain RC54_RS21845 PF16921 Tex protein YqgF-like domain RC54_RS21850 PF01195 Peptidyl-tRNA hydrolase RC54_RS21855 PF10411 Disulfide bond isomerase protein N-terminus RC54_RS21855 PF13098 Thioredoxin-like domain RC54_RS21860 PF01494 FAD binding domain RC54_RS21880 PF05707 Zonular occludens toxin (Zot) RC54_RS21885 PF00263 Bacterial type II and III secretion system protein RC54_RS21885 PF03958 Bacterial type II/III secretion system short domain RC54_RS21900 PF00589 Phage integrase family RC54_RS21965 PF02801 Beta-ketoacyl synthase, C-terminal domain RC54_RS21965 PF00698 Acyl transferase domain RC54_RS21965 PF08990 Erythronolide synthase docking RC54_RS21965 PF09277 Erythronolide synthase, docking RC54_RS21965 PF16197 Ketoacyl-synthetase C-terminal extension RC54_RS21965 PF00109 Beta-ketoacyl synthase, N-terminal domain RC54_RS21965 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS21965 PF00550 Phosphopantetheine attachment site RC54_RS21965 PF14765 Polyketide synthase dehydratase RC54_RS21965 PF08659 KR domain RC54_RS21970 PF01061 ABC-2 type transporter RC54_RS21975 PF00005 ABC transporter RC54_RS21980 PF17994 Galactofuranosyltransferase 2 N-terminal RC54_RS21990 PF03275 UDP-galactopyranose mutase RC54_RS21995 PF00483 Nucleotidyl transferase RC54_RS22000 PF02563 Polysaccharide biosynthesis/export protein RC54_RS22005 PF05159 Capsule polysaccharide biosynthesis protein RC54_RS22010 PF05159 Capsule polysaccharide biosynthesis protein RC54_RS22015 PF00106 short chain dehydrogenase RC54_RS22025 PF00672 HAMP domain RC54_RS22025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS22025 PF02203 Tar ligand binding domain homologue RC54_RS22045 PF06039 Malate:quinone oxidoreductase (Mqo) RC54_RS22050 PF03975 CheD chemotactic sensory transduction RC54_RS22055 PF01261 Xylose isomerase-like TIM barrel RC54_RS22060 PF07690 Major Facilitator Superfamily RC54_RS22065 PF00596 Class II Aldolase and Adducin N-terminal domain RC54_RS22070 PF07005 Sugar-binding N-terminal domain RC54_RS22070 PF17042 Nucleotide-binding C-terminal domain RC54_RS22075 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RC54_RS22075 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RC54_RS22080 PF00392 Bacterial regulatory proteins, gntR family RC54_RS22080 PF07729 FCD domain RC54_RS22100 PF07690 Major Facilitator Superfamily RC54_RS22105 PF02311 AraC-like ligand binding domain RC54_RS22105 PF12833 Helix-turn-helix domain RC54_RS22110 PF01928 CYTH domain RC54_RS22115 PF07729 FCD domain RC54_RS22115 PF00392 Bacterial regulatory proteins, gntR family RC54_RS22120 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS22125 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS22130 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS22135 PF00005 ABC transporter RC54_RS22140 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) RC54_RS22145 PF01810 LysE type translocator RC54_RS22150 PF12852 Cupin RC54_RS22150 PF12833 Helix-turn-helix domain RC54_RS22160 PF00962 Adenosine/AMP deaminase RC54_RS22165 PF00392 Bacterial regulatory proteins, gntR family RC54_RS22170 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RC54_RS22175 PF01177 Asp/Glu/Hydantoin racemase RC54_RS22200 PF00005 ABC transporter RC54_RS22205 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS22210 PF00005 ABC transporter RC54_RS22215 PF02653 Branched-chain amino acid transport system / permease component RC54_RS22220 PF02653 Branched-chain amino acid transport system / permease component RC54_RS22225 PF02608 ABC transporter substrate-binding protein PnrA-like RC54_RS22230 PF17191 RecG wedge domain RC54_RS22230 PF00270 DEAD/DEAH box helicase RC54_RS22230 PF13749 Putative ATP-dependent DNA helicase recG C-terminal RC54_RS22245 PF01381 Helix-turn-helix RC54_RS22250 PF05209 Septum formation inhibitor MinC, N-terminal domain RC54_RS22250 PF03775 Septum formation inhibitor MinC, C-terminal domain RC54_RS22255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RC54_RS22260 PF03776 Septum formation topological specificity factor MinE RC54_RS22265 PF00072 Response regulator receiver domain RC54_RS22265 PF00486 Transcriptional regulatory protein, C terminal RC54_RS22270 PF01488 Shikimate / quinate 5-dehydrogenase RC54_RS22270 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RC54_RS22270 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RC54_RS22275 PF03462 PCRF domain RC54_RS22275 PF00472 RF-1 domain RC54_RS22280 PF02600 Disulfide bond formation protein DsbB RC54_RS22285 PF05175 Methyltransferase small domain RC54_RS22285 PF17827 PrmC N-terminal domain RC54_RS22295 PF00351 Biopterin-dependent aromatic amino acid hydroxylase RC54_RS22305 PF12627 Probable RNA and SrmB- binding site of polymerase A RC54_RS22305 PF01743 Poly A polymerase head domain RC54_RS22305 PF01966 HD domain RC54_RS22310 PF00043 Glutathione S-transferase, C-terminal domain RC54_RS22310 PF13417 Glutathione S-transferase, N-terminal domain RC54_RS22320 PF01464 Transglycosylase SLT domain RC54_RS22320 PF14718 Soluble lytic murein transglycosylase L domain RC54_RS22325 PF01812 5-formyltetrahydrofolate cyclo-ligase family RC54_RS22330 PF02219 Methylenetetrahydrofolate reductase RC54_RS22335 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RC54_RS22340 PF05221 S-adenosyl-L-homocysteine hydrolase RC54_RS22340 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RC54_RS22345 PF02773 S-adenosylmethionine synthetase, C-terminal domain RC54_RS22345 PF00438 S-adenosylmethionine synthetase, N-terminal domain RC54_RS22345 PF02772 S-adenosylmethionine synthetase, central domain RC54_RS22355 PF03279 Bacterial lipid A biosynthesis acyltransferase RC54_RS22360 PF01678 Diaminopimelate epimerase RC54_RS22370 PF13609 Gram-negative porin RC54_RS22380 PF00589 Phage integrase family RC54_RS22380 PF02899 Phage integrase, N-terminal SAM-like domain RC54_RS22400 PF00696 Amino acid kinase family RC54_RS22410 PF03309 Type III pantothenate kinase RC54_RS22415 PF02237 Biotin protein ligase C terminal domain RC54_RS22415 PF03099 Biotin/lipoate A/B protein ligase family RC54_RS22415 PF08279 HTH domain RC54_RS22430 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RC54_RS22435 PF07943 Penicillin-binding protein 5, C-terminal domain RC54_RS22435 PF00768 D-alanyl-D-alanine carboxypeptidase RC54_RS22440 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS22440 PF13192 Thioredoxin domain RC54_RS22445 PF10417 C-terminal domain of 1-Cys peroxiredoxin RC54_RS22445 PF00578 AhpC/TSA family RC54_RS22450 PF03061 Thioesterase superfamily RC54_RS22455 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RC54_RS22455 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RC54_RS22460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC54_RS22460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS22460 PF01842 ACT domain RC54_RS22470 PF00710 Asparaginase, N-terminal RC54_RS22470 PF17763 Glutaminase/Asparaginase C-terminal domain RC54_RS22475 PF03466 LysR substrate binding domain RC54_RS22475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS22480 PF03601 Conserved hypothetical protein 698 RC54_RS22490 PF13361 UvrD-like helicase C-terminal domain RC54_RS22490 PF00580 UvrD/REP helicase N-terminal domain RC54_RS22530 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS22535 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS22540 PF13247 4Fe-4S dicluster domain RC54_RS22540 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RC54_RS22540 PF07992 Pyridine nucleotide-disulphide oxidoreductase RC54_RS22550 PF00817 impB/mucB/samB family RC54_RS22550 PF11799 impB/mucB/samB family C-terminal domain RC54_RS22555 PF07733 Bacterial DNA polymerase III alpha NTPase domain RC54_RS22555 PF02811 PHP domain RC54_RS22555 PF14579 Helix-hairpin-helix motif RC54_RS22555 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RC54_RS22575 PF07729 FCD domain RC54_RS22575 PF00392 Bacterial regulatory proteins, gntR family RC54_RS22580 PF04381 Putative exonuclease, RdgC RC54_RS22585 PF01266 FAD dependent oxidoreductase RC54_RS22590 PF18665 Tetracyclin repressor-like, C-terminal domain RC54_RS22590 PF00440 Bacterial regulatory proteins, tetR family RC54_RS22595 PF00679 Elongation factor G C-terminus RC54_RS22595 PF14492 Elongation Factor G, domain II RC54_RS22595 PF03764 Elongation factor G, domain IV RC54_RS22595 PF00009 Elongation factor Tu GTP binding domain RC54_RS22595 PF03144 Elongation factor Tu domain 2 RC54_RS22605 PF00881 Nitroreductase family RC54_RS22610 PF01926 50S ribosome-binding GTPase RC54_RS22610 PF12631 MnmE helical domain RC54_RS22610 PF10396 GTP-binding protein TrmE N-terminus RC54_RS22615 PF14849 YidC periplasmic domain RC54_RS22615 PF02096 60Kd inner membrane protein RC54_RS22620 PF01809 Putative membrane protein insertion efficiency factor RC54_RS22625 PF00825 Ribonuclease P RC54_RS22630 PF00468 Ribosomal protein L34 RC54_RS22635 PF08298 PrkA AAA domain RC54_RS22635 PF06798 PrkA serine protein kinase C-terminal domain RC54_RS22640 PF04285 Protein of unknown function (DUF444) RC54_RS22645 PF04293 SpoVR like protein RC54_RS22655 PF01914 MarC family integral membrane protein RC54_RS22665 PF02574 Homocysteine S-methyltransferase RC54_RS22665 PF00809 Pterin binding enzyme RC54_RS22665 PF02965 Vitamin B12 dependent methionine synthase, activation domain RC54_RS22665 PF02607 B12 binding domain RC54_RS22665 PF02310 B12 binding domain RC54_RS22670 PF01048 Phosphorylase superfamily RC54_RS22675 PF00551 Formyl transferase RC54_RS22675 PF02911 Formyl transferase, C-terminal domain RC54_RS22680 PF00106 short chain dehydrogenase RC54_RS22685 PF13462 Thioredoxin RC54_RS22695 PF03485 Arginyl tRNA synthetase N terminal domain RC54_RS22695 PF05746 DALR anticodon binding domain RC54_RS22695 PF00750 tRNA synthetases class I (R) RC54_RS22700 PF17764 3′ DNA-binding domain (3′BD) RC54_RS22700 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RC54_RS22700 PF00271 Helicase conserved C-terminal domain RC54_RS22700 PF18074 Primosomal protein N C-terminal domain RC54_RS22700 PF00270 DEAD/DEAH box helicase RC54_RS22705 PF01208 Uroporphyrinogen decarboxylase (URO-D) RC54_RS22710 PF00497 Bacterial extracellular solute-binding proteins, family 3 RC54_RS22715 PF03976 Polyphosphate kinase 2 (PPK2) RC54_RS22720 PF13380 CoA binding domain RC54_RS22725 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RC54_RS22725 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RC54_RS22730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC54_RS22730 PF02874 ATP synthase alpha/beta family, beta-barrel domain RC54_RS22735 PF00231 ATP synthase RC54_RS22740 PF02874 ATP synthase alpha/beta family, beta-barrel domain RC54_RS22740 PF00306 ATP synthase alpha/beta chain, C terminal domain RC54_RS22740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RC54_RS22745 PF00213 ATP synthase delta (OSCP) subunit RC54_RS22750 PF00430 ATP synthase B/B' CF(0) RC54_RS22755 PF00137 ATP synthase subunit C RC54_RS22760 PF00119 ATP synthase A chain RC54_RS22770 PF16363 GDP-mannose 4,6 dehydratase RC54_RS22775 PF16363 GDP-mannose 4,6 dehydratase RC54_RS22780 PF00483 Nucleotidyl transferase RC54_RS22785 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RC54_RS22790 PF04321 RmlD substrate binding domain RC54_RS22800 PF08421 Putative zinc binding domain RC54_RS22800 PF08484 C-methyltransferase C-terminal domain RC54_RS22805 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RC54_RS22810 PF00483 Nucleotidyl transferase RC54_RS22825 PF01370 NAD dependent epimerase/dehydratase family RC54_RS22830 PF13580 SIS domain RC54_RS22835 PF16363 GDP-mannose 4,6 dehydratase RC54_RS22840 PF00456 Transketolase, thiamine diphosphate binding domain RC54_RS22845 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RC54_RS22845 PF02779 Transketolase, pyrimidine binding domain RC54_RS22845 PF02780 Transketolase, C-terminal domain RC54_RS22860 PF08241 Methyltransferase domain RC54_RS22865 PF00107 Zinc-binding dehydrogenase RC54_RS22865 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS22870 PF00483 Nucleotidyl transferase RC54_RS22890 PF01467 Cytidylyltransferase-like RC54_RS22890 PF00294 pfkB family carbohydrate kinase RC54_RS22900 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC54_RS22905 PF13677 Membrane MotB of proton-channel complex MotA/MotB RC54_RS22905 PF00691 OmpA family RC54_RS22925 PF07722 Peptidase C26 RC54_RS22930 PF02525 Flavodoxin-like fold RC54_RS22935 PF02254 TrkA-N domain RC54_RS22935 PF00999 Sodium/hydrogen exchanger family RC54_RS22940 PF17820 PDZ domain RC54_RS22940 PF13180 PDZ domain RC54_RS22945 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS22945 PF08521 Two-component sensor kinase N-terminal RC54_RS22945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS22950 PF00486 Transcriptional regulatory protein, C terminal RC54_RS22950 PF00072 Response regulator receiver domain RC54_RS22970 PF02152 Dihydroneopterin aldolase RC54_RS22975 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system RC54_RS22990 PF00155 Aminotransferase class I and II RC54_RS22995 PF01171 PP-loop family RC54_RS23000 PF16363 GDP-mannose 4,6 dehydratase RC54_RS23010 PF14602 Hexapeptide repeat of succinyl-transferase RC54_RS23010 PF12804 MobA-like NTP transferase domain RC54_RS23010 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS23020 PF01037 Lrp/AsnC ligand binding domain RC54_RS23025 PF01380 SIS domain RC54_RS23040 PF00171 Aldehyde dehydrogenase family RC54_RS23050 PF02311 AraC-like ligand binding domain RC54_RS23050 PF12833 Helix-turn-helix domain RC54_RS23060 PF02321 Outer membrane efflux protein RC54_RS23065 PF00873 AcrB/AcrD/AcrF family RC54_RS23070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS23070 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS23075 PF00593 TonB dependent receptor RC54_RS23075 PF07715 TonB-dependent Receptor Plug Domain RC54_RS23090 PF00873 AcrB/AcrD/AcrF family RC54_RS23095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS23095 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS23100 PF02321 Outer membrane efflux protein RC54_RS23115 PF08376 Nitrate and nitrite sensing RC54_RS23115 PF03861 ANTAR domain RC54_RS23125 PF01425 Amidase RC54_RS23130 PF02785 Biotin carboxylase C-terminal domain RC54_RS23130 PF00289 Biotin carboxylase, N-terminal domain RC54_RS23130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC54_RS23130 PF00364 Biotin-requiring enzyme RC54_RS23130 PF18140 Propionyl-coenzyme A carboxylase BT domain RC54_RS23145 PF00005 ABC transporter RC54_RS23145 PF08402 TOBE domain RC54_RS23150 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS23175 PF17645 Arylmalonate decarboxylase RC54_RS23180 PF00795 Carbon-nitrogen hydrolase RC54_RS23185 PF01557 Fumarylacetoacetate (FAA) hydrolase family RC54_RS23190 PF07883 Cupin domain RC54_RS23195 PF01494 FAD binding domain RC54_RS23215 PF12833 Helix-turn-helix domain RC54_RS23220 PF01593 Flavin containing amine oxidoreductase RC54_RS23225 PF04199 Putative cyclase RC54_RS23230 PF01613 Flavin reductase like domain RC54_RS23235 PF17885 Styrene monooxygenase A putative substrate binding domain RC54_RS23250 PF02203 Tar ligand binding domain homologue RC54_RS23250 PF00672 HAMP domain RC54_RS23250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS23260 PF08240 Alcohol dehydrogenase GroES-like domain RC54_RS23260 PF00107 Zinc-binding dehydrogenase RC54_RS23285 PF12833 Helix-turn-helix domain RC54_RS23290 PF13407 Periplasmic binding protein domain RC54_RS23295 PF00005 ABC transporter RC54_RS23300 PF02653 Branched-chain amino acid transport system / permease component RC54_RS23310 PF00920 Dehydratase family RC54_RS23320 PF00360 Phytochrome region RC54_RS23320 PF01590 GAF domain RC54_RS23320 PF00563 EAL domain RC54_RS23320 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS23325 PF00768 D-alanyl-D-alanine carboxypeptidase RC54_RS23330 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RC54_RS23340 PF04909 Amidohydrolase RC54_RS23350 PF07690 Major Facilitator Superfamily RC54_RS23355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RC54_RS23355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RC54_RS23360 PF03737 Aldolase/RraA RC54_RS23370 PF07690 Major Facilitator Superfamily RC54_RS23375 PF04909 Amidohydrolase RC54_RS23380 PF03466 LysR substrate binding domain RC54_RS23380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS23390 PF13419 Haloacid dehalogenase-like hydrolase RC54_RS23395 PF06736 Protein of unknown function (DUF1211) RC54_RS23405 PF00072 Response regulator receiver domain RC54_RS23405 PF00196 Bacterial regulatory proteins, luxR family RC54_RS23425 PF00210 Ferritin-like domain RC54_RS23430 PF00561 alpha/beta hydrolase fold RC54_RS23440 PF07969 Amidohydrolase family RC54_RS23445 PF00857 Isochorismatase family RC54_RS23465 PF13493 Domain of unknown function (DUF4118) RC54_RS23465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS23465 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS23465 PF00989 PAS fold RC54_RS23465 PF08447 PAS fold RC54_RS23465 PF13426 PAS domain RC54_RS23470 PF14525 AraC-binding-like domain RC54_RS23470 PF12833 Helix-turn-helix domain RC54_RS23485 PF03466 LysR substrate binding domain RC54_RS23485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS23490 PF02600 Disulfide bond formation protein DsbB RC54_RS23495 PF13609 Gram-negative porin RC54_RS23500 PF08402 TOBE domain RC54_RS23500 PF00005 ABC transporter RC54_RS23525 PF00072 Response regulator receiver domain RC54_RS23525 PF00486 Transcriptional regulatory protein, C terminal RC54_RS23530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS23530 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS23535 PF02203 Tar ligand binding domain homologue RC54_RS23535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS23535 PF00672 HAMP domain RC54_RS23540 PF00221 Aromatic amino acid lyase RC54_RS23545 PF01546 Peptidase family M20/M25/M40 RC54_RS23550 PF00375 Sodium:dicarboxylate symporter family RC54_RS23560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS23560 PF02203 Tar ligand binding domain homologue RC54_RS23560 PF00672 HAMP domain RC54_RS23565 PF01126 Heme oxygenase RC54_RS23575 PF00248 Aldo/keto reductase family RC54_RS23580 PF00672 HAMP domain RC54_RS23580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS23580 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS23585 PF00072 Response regulator receiver domain RC54_RS23585 PF00486 Transcriptional regulatory protein, C terminal RC54_RS23590 PF01547 Bacterial extracellular solute-binding protein RC54_RS23595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS23595 PF03466 LysR substrate binding domain RC54_RS23600 PF01717 Cobalamin-independent synthase, Catalytic domain RC54_RS23600 PF08267 Cobalamin-independent synthase, N-terminal domain RC54_RS23605 PF11737 Protein of unknown function (DUF3300) RC54_RS23610 PF00583 Acetyltransferase (GNAT) family RC54_RS23620 PF05199 GMC oxidoreductase RC54_RS23620 PF00732 GMC oxidoreductase RC54_RS23625 PF00034 Cytochrome c RC54_RS23625 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RC54_RS23635 PF01022 Bacterial regulatory protein, arsR family RC54_RS23640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RC54_RS23655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS23655 PF03466 LysR substrate binding domain RC54_RS23660 PF01467 Cytidylyltransferase-like RC54_RS23660 PF00293 NUDIX domain RC54_RS23665 PF00795 Carbon-nitrogen hydrolase RC54_RS23665 PF02540 NAD synthase RC54_RS23670 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RC54_RS23670 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RC54_RS23700 PF00171 Aldehyde dehydrogenase family RC54_RS23705 PF02954 Bacterial regulatory protein, Fis family RC54_RS23705 PF00158 Sigma-54 interaction domain RC54_RS23705 PF06505 Activator of aromatic catabolism RC54_RS23705 PF02830 V4R domain RC54_RS23715 PF00176 SNF2 family N-terminal domain RC54_RS23715 PF12419 SNF2 Helicase protein RC54_RS23715 PF00271 Helicase conserved C-terminal domain RC54_RS23725 PF07690 Major Facilitator Superfamily RC54_RS23730 PF17137 Domain of unknown function (DUF5110) RC54_RS23730 PF16338 Domain of unknown function (DUF4968) RC54_RS23730 PF13802 Galactose mutarotase-like RC54_RS23730 PF01055 Glycosyl hydrolases family 31 RC54_RS23745 PF01266 FAD dependent oxidoreductase RC54_RS23750 PF00884 Sulfatase RC54_RS23760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS23760 PF02203 Tar ligand binding domain homologue RC54_RS23760 PF00672 HAMP domain RC54_RS23765 PF04909 Amidohydrolase RC54_RS23770 PF07690 Major Facilitator Superfamily RC54_RS23790 PF02798 Glutathione S-transferase, N-terminal domain RC54_RS23790 PF14834 Glutathione S-transferase, C-terminal domain RC54_RS23795 PF07690 Major Facilitator Superfamily RC54_RS23800 PF00392 Bacterial regulatory proteins, gntR family RC54_RS23800 PF07729 FCD domain RC54_RS23805 PF01370 NAD dependent epimerase/dehydratase family RC54_RS23810 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RC54_RS23810 PF02321 Outer membrane efflux protein RC54_RS23815 PF00873 AcrB/AcrD/AcrF family RC54_RS23820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RC54_RS23820 PF00529 HlyD membrane-fusion protein of T1SS RC54_RS23825 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS23825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS23825 PF00672 HAMP domain RC54_RS23830 PF00072 Response regulator receiver domain RC54_RS23830 PF00486 Transcriptional regulatory protein, C terminal RC54_RS23835 PF00672 HAMP domain RC54_RS23835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS23835 PF02203 Tar ligand binding domain homologue RC54_RS23840 PF02321 Outer membrane efflux protein RC54_RS23850 PF00873 AcrB/AcrD/AcrF family RC54_RS23870 PF00034 Cytochrome c RC54_RS23890 PF07690 Major Facilitator Superfamily RC54_RS23905 PF00893 Small Multidrug Resistance protein RC54_RS23910 PF00106 short chain dehydrogenase RC54_RS23915 PF00106 short chain dehydrogenase RC54_RS23920 PF07690 Major Facilitator Superfamily RC54_RS23925 PF00158 Sigma-54 interaction domain RC54_RS23925 PF02954 Bacterial regulatory protein, Fis family RC54_RS23925 PF00072 Response regulator receiver domain RC54_RS23930 PF02743 Cache domain RC54_RS23930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS23930 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS23935 PF00563 EAL domain RC54_RS23935 PF00360 Phytochrome region RC54_RS23935 PF01590 GAF domain RC54_RS23935 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS23940 PF01144 Coenzyme A transferase RC54_RS23945 PF01144 Coenzyme A transferase RC54_RS23950 PF00196 Bacterial regulatory proteins, luxR family RC54_RS23950 PF00072 Response regulator receiver domain RC54_RS23955 PF03466 LysR substrate binding domain RC54_RS23955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS23960 PF13460 NAD(P)H-binding RC54_RS23980 PF00795 Carbon-nitrogen hydrolase RC54_RS23985 PF00158 Sigma-54 interaction domain RC54_RS23985 PF13188 PAS domain RC54_RS23985 PF02954 Bacterial regulatory protein, Fis family RC54_RS23990 PF02653 Branched-chain amino acid transport system / permease component RC54_RS23995 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS23995 PF00005 ABC transporter RC54_RS24000 PF00005 ABC transporter RC54_RS24005 PF17763 Glutaminase/Asparaginase C-terminal domain RC54_RS24005 PF00710 Asparaginase, N-terminal RC54_RS24030 PF13460 NAD(P)H-binding RC54_RS24045 PF00132 Bacterial transferase hexapeptide (six repeats) RC54_RS24045 PF14602 Hexapeptide repeat of succinyl-transferase RC54_RS24045 PF12804 MobA-like NTP transferase domain RC54_RS24055 PF03466 LysR substrate binding domain RC54_RS24055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS24065 PF00155 Aminotransferase class I and II RC54_RS24065 PF00392 Bacterial regulatory proteins, gntR family RC54_RS24070 PF00202 Aminotransferase class-III RC54_RS24075 PF00171 Aldehyde dehydrogenase family RC54_RS24090 PF02653 Branched-chain amino acid transport system / permease component RC54_RS24095 PF02653 Branched-chain amino acid transport system / permease component RC54_RS24095 PF11862 Domain of unknown function (DUF3382) RC54_RS24100 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS24100 PF00005 ABC transporter RC54_RS24105 PF00005 ABC transporter RC54_RS24110 PF01546 Peptidase family M20/M25/M40 RC54_RS24110 PF07687 Peptidase dimerisation domain RC54_RS24120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS24120 PF00672 HAMP domain RC54_RS24120 PF02203 Tar ligand binding domain homologue RC54_RS24125 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RC54_RS24155 PF02637 GatB domain RC54_RS24155 PF02934 GatB/GatE catalytic domain RC54_RS24160 PF01425 Amidase RC54_RS24165 PF02686 Glu-tRNAGln amidotransferase C subunit RC54_RS24175 PF04085 rod shape-determining protein MreC RC54_RS24185 PF00905 Penicillin binding protein transpeptidase domain RC54_RS24185 PF03717 Penicillin-binding Protein dimerisation domain RC54_RS24190 PF01098 Cell cycle protein RC54_RS24195 PF03330 Lytic transglycolase RC54_RS24195 PF05036 Sporulation related domain RC54_RS24200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RC54_RS24205 PF04348 LppC putative lipoprotein RC54_RS24210 PF02021 Uncharacterised protein family UPF0102 RC54_RS24215 PF13580 SIS domain RC54_RS24220 PF04972 BON domain RC54_RS24225 PF00578 AhpC/TSA family RC54_RS24235 PF00156 Phosphoribosyl transferase domain RC54_RS24240 PF03372 Endonuclease/Exonuclease/phosphatase family RC54_RS24245 PF01131 DNA topoisomerase RC54_RS24245 PF01751 Toprim domain RC54_RS24250 PF04361 Protein of unknown function (DUF494) RC54_RS24255 PF02481 DNA recombination-mediator protein A RC54_RS24255 PF17782 DprA winged helix domain RC54_RS24260 PF01327 Polypeptide deformylase RC54_RS24270 PF13411 MerR HTH family regulatory protein RC54_RS24275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS24275 PF02770 Acyl-CoA dehydrogenase, middle domain RC54_RS24275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS24290 PF01039 Carboxyl transferase domain RC54_RS24295 PF02785 Biotin carboxylase C-terminal domain RC54_RS24295 PF00289 Biotin carboxylase, N-terminal domain RC54_RS24295 PF00364 Biotin-requiring enzyme RC54_RS24295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RC54_RS24310 PF00682 HMGL-like RC54_RS24345 PF13018 Extended Signal Peptide of Type V secretion system RC54_RS24345 PF05860 haemagglutination activity domain RC54_RS24345 PF05860 haemagglutination activity domain RC54_RS24345 PF04829 Pre-toxin domain with VENN motif RC54_RS24345 PF13332 Hemagglutinin repeat RC54_RS24345 PF04829 Pre-toxin domain with VENN motif RC54_RS24345 PF13018 Extended Signal Peptide of Type V secretion system RC54_RS24345 PF13332 Hemagglutinin repeat RC54_RS24350 PF08479 POTRA domain, ShlB-type RC54_RS24350 PF17287 POTRA domain RC54_RS24350 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RC54_RS24355 PF03060 Nitronate monooxygenase RC54_RS24365 PF00561 alpha/beta hydrolase fold RC54_RS24370 PF07690 Major Facilitator Superfamily RC54_RS24375 PF00072 Response regulator receiver domain RC54_RS24385 PF00155 Aminotransferase class I and II RC54_RS24400 PF00501 AMP-binding enzyme RC54_RS24400 PF13193 AMP-binding enzyme C-terminal domain RC54_RS24410 PF01758 Sodium Bile acid symporter family RC54_RS24420 PF00005 ABC transporter RC54_RS24420 PF12848 ABC transporter RC54_RS24425 PF00892 EamA-like transporter family RC54_RS24430 PF04115 Ureidoglycolate lyase RC54_RS24435 PF01425 Amidase RC54_RS24440 PF00005 ABC transporter RC54_RS24440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS24445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RC54_RS24445 PF00005 ABC transporter RC54_RS24450 PF12911 N-terminal TM domain of oligopeptide transport permease C RC54_RS24450 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS24455 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS24460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RC54_RS24465 PF07729 FCD domain RC54_RS24465 PF00392 Bacterial regulatory proteins, gntR family RC54_RS24470 PF07690 Major Facilitator Superfamily RC54_RS24480 PF01547 Bacterial extracellular solute-binding protein RC54_RS24485 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS24485 PF00360 Phytochrome region RC54_RS24485 PF00563 EAL domain RC54_RS24485 PF01590 GAF domain RC54_RS24500 PF02653 Branched-chain amino acid transport system / permease component RC54_RS24505 PF02653 Branched-chain amino acid transport system / permease component RC54_RS24510 PF00005 ABC transporter RC54_RS24510 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS24515 PF00005 ABC transporter RC54_RS24520 PF01774 UreD urease accessory protein RC54_RS24525 PF00547 Urease, gamma subunit RC54_RS24530 PF00699 Urease beta subunit RC54_RS24535 PF01979 Amidohydrolase family RC54_RS24535 PF00449 Urease alpha-subunit, N-terminal domain RC54_RS24540 PF05194 UreE urease accessory protein, C-terminal domain RC54_RS24540 PF02814 UreE urease accessory protein, N-terminal domain RC54_RS24545 PF01730 UreF RC54_RS24550 PF02492 CobW/HypB/UreG, nucleotide-binding domain RC54_RS24555 PF04955 HupE / UreJ protein RC54_RS24585 PF04972 BON domain RC54_RS24590 PF00158 Sigma-54 interaction domain RC54_RS24590 PF00072 Response regulator receiver domain RC54_RS24600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RC54_RS24600 PF00512 His Kinase A (phospho-acceptor) domain RC54_RS24605 PF01546 Peptidase family M20/M25/M40 RC54_RS24605 PF07687 Peptidase dimerisation domain RC54_RS24610 PF07690 Major Facilitator Superfamily RC54_RS24615 PF01966 HD domain RC54_RS24615 PF11871 Domain of unknown function (DUF3391) RC54_RS24625 PF01227 GTP cyclohydrolase I RC54_RS24630 PF02107 Flagellar L-ring protein RC54_RS24645 PF01266 FAD dependent oxidoreductase RC54_RS24650 PF00528 Binding-protein-dependent transport system inner membrane component RC54_RS24655 PF00005 ABC transporter RC54_RS24660 PF00743 Flavin-binding monooxygenase-like RC54_RS24695 PF00892 EamA-like transporter family RC54_RS24700 PF00296 Luciferase-like monooxygenase RC54_RS24705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS24705 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS24710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RC54_RS24710 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RC54_RS24725 PF09361 Phasin protein RC54_RS24745 PF01266 FAD dependent oxidoreductase RC54_RS24745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RC54_RS24750 PF03707 Bacterial signalling protein N terminal repeat RC54_RS24750 PF00563 EAL domain RC54_RS24750 PF00990 Diguanylate cyclase, GGDEF domain RC54_RS24755 PF02492 CobW/HypB/UreG, nucleotide-binding domain RC54_RS24755 PF07683 Cobalamin synthesis protein cobW C-terminal domain RC54_RS24760 PF00925 GTP cyclohydrolase II RC54_RS24765 PF00732 GMC oxidoreductase RC54_RS24765 PF05199 GMC oxidoreductase RC54_RS24770 PF00171 Aldehyde dehydrogenase family RC54_RS24780 PF04055 Radical SAM superfamily RC54_RS24785 PF03099 Biotin/lipoate A/B protein ligase family RC54_RS24795 PF03466 LysR substrate binding domain RC54_RS24795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS24800 PF04359 Protein of unknown function (DUF493) RC54_RS24815 PF01063 Amino-transferase class IV RC54_RS24820 PF06472 ABC transporter transmembrane region 2 RC54_RS24820 PF00005 ABC transporter RC54_RS24825 PF02203 Tar ligand binding domain homologue RC54_RS24825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RC54_RS24825 PF00672 HAMP domain RC54_RS24830 PF00664 ABC transporter transmembrane region RC54_RS24830 PF00005 ABC transporter RC54_RS24835 PF01915 Glycosyl hydrolase family 3 C-terminal domain RC54_RS24835 PF00933 Glycosyl hydrolase family 3 N terminal domain RC54_RS24835 PF14310 Fibronectin type III-like domain RC54_RS24840 PF04349 Periplasmic glucan biosynthesis protein, MdoG RC54_RS24845 PF17762 HTH domain found in ParB protein RC54_RS24845 PF02195 ParB-like nuclease domain RC54_RS24850 PF13614 AAA domain RC54_RS24855 PF01810 LysE type translocator RC54_RS24860 PF08212 Lipocalin-like domain RC54_RS24865 PF02527 rRNA small subunit methyltransferase G RC54_RS24870 PF01134 Glucose inhibited division protein A RC54_RS24870 PF13932 GidA associated domain RC54_RS24875 PF01925 Sulfite exporter TauE/SafE RC54_RS24880 PF02653 Branched-chain amino acid transport system / permease component RC54_RS24885 PF02653 Branched-chain amino acid transport system / permease component RC54_RS24895 PF00005 ABC transporter RC54_RS24900 PF00005 ABC transporter RC54_RS24900 PF12399 Branched-chain amino acid ATP-binding cassette transporter RC54_RS24905 PF00732 GMC oxidoreductase RC54_RS24905 PF05199 GMC oxidoreductase RC54_RS24910 PF00171 Aldehyde dehydrogenase family RC54_RS24915 PF03466 LysR substrate binding domain RC54_RS24915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS24925 PF05170 AsmA family RC54_RS24930 PF03466 LysR substrate binding domain RC54_RS24930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RC54_RS24945 PF13230 Glutamine amidotransferases class-II