EAE_00035	SM00764	Citrate lyase ligase C-terminal domain
EAE_00050	SM00091	PAS domain
EAE_00050	SM00387	Histidine kinase-like ATPases
EAE_00055	SM00448	cheY-homologous receiver domain
EAE_00100	SM00421	helix_turn_helix, Lux Regulon
EAE_00105	SM00862	Transcriptional regulatory protein, C terminal
EAE_00255	SM00387	Histidine kinase-like ATPases
EAE_00260	SM00448	cheY-homologous receiver domain
EAE_00260	SM00850	LytTr DNA-binding domain
EAE_00300	SM00052	Putative diguanylate phosphodiesterase
EAE_00300	SM00267	diguanylate cyclase
EAE_00345	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EAE_00345	SM00292	breast cancer carboxy-terminal domain
EAE_00345	SM00532	Ligase N family
EAE_00350	SM00771	ZipA, C-terminal domain (FtsZ-binding)
EAE_00390	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_00405	SM00382	ATPases associated with a variety of cellular activities
EAE_00445	SM00646	EAE_00445
EAE_00455	SM00919	Malic enzyme, NAD binding domain
EAE_00455	SM01274	EAE_00455
EAE_00465	SM00861	Transketolase, pyrimidine binding domain
EAE_00530	SM01130	EAE_00530
EAE_00630	SM00052	Putative diguanylate phosphodiesterase
EAE_00630	SM00267	diguanylate cyclase
EAE_00665	SM00116	Domain in cystathionine beta-synthase and other proteins.
EAE_00665	SM01240	EAE_00665
EAE_00695	SM00564	beta-propeller repeat
EAE_00715	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_00725	SM00562	EAE_00725
EAE_00735	SM01359	EAE_00735
EAE_00735	SM01360	EAE_00735
EAE_00740	SM00450	Rhodanese Homology Domain
EAE_00770	SM00271	DnaJ molecular chaperone homology domain
EAE_00840	SM00938	Nitrogen regulatory protein P-II
EAE_00845	SM00382	ATPases associated with a variety of cellular activities
EAE_00845	SM00448	cheY-homologous receiver domain
EAE_00855	SM00387	Histidine kinase-like ATPases
EAE_00855	SM00388	His Kinase A (phosphoacceptor) domain
EAE_00860	SM01211	EAE_00860
EAE_00930	SM00358	Double-stranded RNA binding motif
EAE_00930	SM00535	Ribonuclease III family
EAE_00975	SM00487	DEAD-like helicases superfamily
EAE_00975	SM00490	helicase superfamily c-terminal domain
EAE_00985	SM00986	Uracil DNA glycosylase superfamily
EAE_00985	SM00987	UreE urease accessory protein, C-terminal domain 
EAE_00990	SM00967	RNA 2'-O ribose methyltransferase substrate binding
EAE_01000	SM01144	EAE_01000
EAE_01005	SM00881	CoA binding domain
EAE_01010	SM00155	Phospholipase D. Active site motifs.
EAE_01025	SM00382	ATPases associated with a variety of cellular activities
EAE_01025	SM01086	C-terminal, D2-small domain, of ClpB protein
EAE_01035	SM00363	S4 RNA-binding domain
EAE_01050	SM00830	Chorismate mutase type II
EAE_01060	SM00830	Chorismate mutase type II
EAE_01075	SM00267	diguanylate cyclase
EAE_01115	SM00382	ATPases associated with a variety of cellular activities
EAE_01115	SM00962	SRP54-type protein, GTPase domain
EAE_01115	SM00963	SRP54-type protein, helical bundle domain
EAE_01125	SM01091	Transporter associated domain
EAE_01185	SM00342	helix_turn_helix, arabinose operon control protein
EAE_01250	SM00382	ATPases associated with a variety of cellular activities
EAE_01265	SM00849	Metallo-beta-lactamase superfamily
EAE_01295	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_01330	SM00382	ATPases associated with a variety of cellular activities
EAE_01335	SM00382	ATPases associated with a variety of cellular activities
EAE_01345	SM00382	ATPases associated with a variety of cellular activities
EAE_01350	SM00014	Acid phosphatase homologues
EAE_01365	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
EAE_01370	SM00450	Rhodanese Homology Domain
EAE_01385	SM00528	Domain in histone-like proteins of HNS family
EAE_01405	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_01435	SM00382	ATPases associated with a variety of cellular activities
EAE_01450	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_01465	SM00917	LeuA allosteric (dimerisation) domain
EAE_01470	SM00342	helix_turn_helix, arabinose operon control protein
EAE_01495	SM00749	bacterial OsmY and nodulation domain
EAE_01510	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
EAE_01520	SM00382	ATPases associated with a variety of cellular activities
EAE_01540	SM00382	ATPases associated with a variety of cellular activities
EAE_01580	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_01580	SM01134	EAE_01580
EAE_01585	SM00116	Domain in cystathionine beta-synthase and other proteins.
EAE_01590	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EAE_01590	SM00382	ATPases associated with a variety of cellular activities
EAE_01595	SM00849	Metallo-beta-lactamase superfamily
EAE_01620	SM00354	helix_turn _helix lactose operon repressor
EAE_01705	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EAE_01705	SM00382	ATPases associated with a variety of cellular activities
EAE_01715	SM00382	ATPases associated with a variety of cellular activities
EAE_01775	SM00382	ATPases associated with a variety of cellular activities
EAE_01780	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
EAE_01780	SM00534	ATPase domain of DNA mismatch repair MUTS family
EAE_01830	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_01850	SM00257	Lysin motif
EAE_01950	SM01192	EAE_01950
EAE_01950	SM01193	EAE_01950
EAE_01965	SM00954	Region found in RelA / SpoT proteins
EAE_01975	SM00073	Histidine Phosphotransfer domain
EAE_01975	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_01975	SM00387	Histidine kinase-like ATPases
EAE_01975	SM00388	His Kinase A (phosphoacceptor) domain
EAE_01975	SM00448	cheY-homologous receiver domain
EAE_01985	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EAE_01990	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EAE_02045	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
EAE_02045	SM00475	5'-3' exonuclease
EAE_02080	SM00925	MltA specific insert domain
EAE_02085	SM00646	EAE_02085
EAE_02095	SM00382	ATPases associated with a variety of cellular activities
EAE_02145	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EAE_02155	SM00927	DNA mismatch repair enzyme MutH
EAE_02180	SM00563	Phosphate acyltransferases
EAE_02185	SM00354	helix_turn _helix lactose operon repressor
EAE_02195	SM00354	helix_turn _helix lactose operon repressor
EAE_02220	SM00640	Glycosyl hydrolases family 32
EAE_02230	SM00354	helix_turn _helix lactose operon repressor
EAE_02275	SM00421	helix_turn_helix, Lux Regulon
EAE_02280	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
EAE_02300	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_02305	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_02335	SM00822	EAE_02335
EAE_02345	SM00903	Flavin reductase like domain
EAE_02380	SM00344	helix_turn_helix ASNC type
EAE_02445	SM00052	Putative diguanylate phosphodiesterase
EAE_02540	SM00354	helix_turn _helix lactose operon repressor
EAE_02545	SM01060	EAE_02545
EAE_02570	SM01321	EAE_02570
EAE_02615	SM00862	Transcriptional regulatory protein, C terminal
EAE_02770	SM00052	Putative diguanylate phosphodiesterase
EAE_02785	SM00257	Lysin motif
EAE_02800	SM00937	EAE_02800
EAE_02845	SM01022	EAE_02845
EAE_02910	SM01011	Aminopeptidase P, N-terminal domain
EAE_02970	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
EAE_02975	SM00861	Transketolase, pyrimidine binding domain
EAE_03035	SM00346	helix_turn_helix isocitrate lyase regulation
EAE_03100	SM00731	SprT homologues.
EAE_03125	SM00732	Likely ribonuclease with RNase H fold.
EAE_03130	SM00421	helix_turn_helix, Lux Regulon
EAE_03135	SM00382	ATPases associated with a variety of cellular activities
EAE_03150	SM01152	EAE_03150
EAE_03160	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_03170	SM00382	ATPases associated with a variety of cellular activities
EAE_03195	SM00478	endonuclease III
EAE_03195	SM00525	EAE_03195
EAE_03255	SM01130	EAE_03255
EAE_03260	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_03260	SM00895	EAE_03260
EAE_03275	SM00382	ATPases associated with a variety of cellular activities
EAE_03315	SM00342	helix_turn_helix, arabinose operon control protein
EAE_03330	SM00257	Lysin motif
EAE_03415	SM00903	Flavin reductase like domain
EAE_03430	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_03430	SM00895	EAE_03430
EAE_03490	SM00342	helix_turn_helix, arabinose operon control protein
EAE_03515	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_03525	SM00563	Phosphate acyltransferases
EAE_03530	SM00434	DNA Topoisomerase IV
EAE_03535	SM00342	helix_turn_helix, arabinose operon control protein
EAE_03535	SM00871	Bacterial transcription activator, effector binding domain
EAE_03545	SM00448	cheY-homologous receiver domain
EAE_03545	SM00862	Transcriptional regulatory protein, C terminal
EAE_03570	SM00387	Histidine kinase-like ATPases
EAE_03570	SM00433	TopoisomeraseII
EAE_03640	SM01118	EAE_03640
EAE_03645	SM00287	Bacterial SH3 domain homologues
EAE_03660	SM00905	Dihydroneopterin aldolase
EAE_03665	SM01207	EAE_03665
EAE_03685	SM00400	zinc finger
EAE_03685	SM00493	EAE_03685
EAE_03685	SM00766	DNA primase DnaG DnaB-binding
EAE_03695	SM00986	Uracil DNA glycosylase superfamily
EAE_03695	SM00987	UreE urease accessory protein, C-terminal domain 
EAE_03805	SM00327	von Willebrand factor (vWF) type A domain
EAE_03810	SM00028	Tetratricopeptide repeats
EAE_03840	SM00382	ATPases associated with a variety of cellular activities
EAE_03855	SM01120	EAE_03855
EAE_03865	SM01120	EAE_03865
EAE_03890	SM00354	helix_turn _helix lactose operon repressor
EAE_03895	SM01038	Beta galactosidase small chain
EAE_03930	SM01133	EAE_03930
EAE_03950	SM00382	ATPases associated with a variety of cellular activities
EAE_03995	SM00858	EAE_03995
EAE_04010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_04010	SM00895	EAE_04010
EAE_04105	SM00858	EAE_04105
EAE_04110	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_04110	SM01134	EAE_04110
EAE_04185	SM00749	bacterial OsmY and nodulation domain
EAE_04245	SM00487	DEAD-like helicases superfamily
EAE_04245	SM00490	helicase superfamily c-terminal domain
EAE_04250	SM00028	Tetratricopeptide repeats
EAE_04255	SM00316	Ribosomal protein S1-like RNA-binding domain
EAE_04255	SM00322	K homology RNA-binding domain
EAE_04260	SM01387	EAE_04260
EAE_04280	SM00316	Ribosomal protein S1-like RNA-binding domain
EAE_04325	SM00382	ATPases associated with a variety of cellular activities
EAE_04335	SM01103	EAE_04335
EAE_04410	SM00382	ATPases associated with a variety of cellular activities
EAE_04440	SM00382	ATPases associated with a variety of cellular activities
EAE_04480	SM00073	Histidine Phosphotransfer domain
EAE_04480	SM00091	PAS domain
EAE_04480	SM00387	Histidine kinase-like ATPases
EAE_04480	SM00388	His Kinase A (phosphoacceptor) domain
EAE_04480	SM00448	cheY-homologous receiver domain
EAE_04485	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_04530	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EAE_04535	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EAE_04580	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_04580	SM00895	EAE_04580
EAE_04585	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_04645	SM00316	Ribosomal protein S1-like RNA-binding domain
EAE_04670	SM00052	Putative diguanylate phosphodiesterase
EAE_04670	SM00267	diguanylate cyclase
EAE_04675	SM00829	Enoylreductase
EAE_04700	SM00878	Biotin carboxylase C-terminal domain
EAE_04815	SM00422	helix_turn_helix, mercury resistance
EAE_04830	SM00662	RNA polymerases D
EAE_04835	SM00363	S4 RNA-binding domain
EAE_04835	SM01390	EAE_04835
EAE_04900	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
EAE_04905	SM01374	EAE_04905
EAE_04925	SM00322	K homology RNA-binding domain
EAE_04940	SM01382	EAE_04940
EAE_04940	SM01383	EAE_04940
EAE_04960	SM01403	EAE_04960
EAE_04985	SM00838	Elongation factor G C-terminus
EAE_04985	SM00889	Elongation factor G, domain IV
EAE_05050	SM00382	ATPases associated with a variety of cellular activities
EAE_05075	SM00100	Cyclic nucleotide-monophosphate binding domain
EAE_05075	SM00419	helix_turn_helix, cAMP Regulatory protein
EAE_05170	SM00965	Secretin and TonB N terminus short domain
EAE_05225	SM00363	S4 RNA-binding domain
EAE_05240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_05240	SM00387	Histidine kinase-like ATPases
EAE_05240	SM00388	His Kinase A (phosphoacceptor) domain
EAE_05245	SM00448	cheY-homologous receiver domain
EAE_05245	SM00862	Transcriptional regulatory protein, C terminal
EAE_05270	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EAE_05285	SM00895	EAE_05285
EAE_05295	SM00316	Ribosomal protein S1-like RNA-binding domain
EAE_05295	SM00732	Likely ribonuclease with RNase H fold.
EAE_05300	SM00899	EAE_05300
EAE_05350	SM00421	helix_turn_helix, Lux Regulon
EAE_05355	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_05355	SM01134	EAE_05355
EAE_05365	SM00450	Rhodanese Homology Domain
EAE_05390	SM00642	Alpha-amylase domain
EAE_05395	SM00642	Alpha-amylase domain
EAE_05400	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EAE_05415	SM00354	helix_turn _helix lactose operon repressor
EAE_05460	SM00382	ATPases associated with a variety of cellular activities
EAE_05480	SM00382	ATPases associated with a variety of cellular activities
EAE_05485	SM00382	ATPases associated with a variety of cellular activities
EAE_05530	SM00382	ATPases associated with a variety of cellular activities
EAE_05535	SM00382	ATPases associated with a variety of cellular activities
EAE_05535	SM00962	SRP54-type protein, GTPase domain
EAE_05535	SM00963	SRP54-type protein, helical bundle domain
EAE_05590	SM00563	Phosphate acyltransferases
EAE_05645	SM00825	Beta-ketoacyl synthase
EAE_05660	SM00825	Beta-ketoacyl synthase
EAE_05730	SM00382	ATPases associated with a variety of cellular activities
EAE_05735	SM00382	ATPases associated with a variety of cellular activities
EAE_05830	SM00354	helix_turn _helix lactose operon repressor
EAE_05860	SM00421	helix_turn_helix, Lux Regulon
EAE_05865	SM00822	EAE_05865
EAE_05905	SM00052	Putative diguanylate phosphodiesterase
EAE_05905	SM00267	diguanylate cyclase
EAE_05910	SM00028	Tetratricopeptide repeats
EAE_05970	SM00382	ATPases associated with a variety of cellular activities
EAE_05975	SM00382	ATPases associated with a variety of cellular activities
EAE_06040	SM00354	helix_turn _helix lactose operon repressor
EAE_06080	SM00357	Cold shock protein domain
EAE_06085	SM00382	ATPases associated with a variety of cellular activities
EAE_06135	SM00382	ATPases associated with a variety of cellular activities
EAE_06145	SM00342	helix_turn_helix, arabinose operon control protein
EAE_06150	SM00047	Lysozyme subfamily 2
EAE_06155	SM00642	Alpha-amylase domain
EAE_06230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_06230	SM00895	EAE_06230
EAE_06245	SM00971	Serine acetyltransferase, N-terminal
EAE_06265	SM00450	Rhodanese Homology Domain
EAE_06295	SM00829	Enoylreductase
EAE_06375	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
EAE_06375	SM01232	EAE_06375
EAE_06430	SM00532	Ligase N family
EAE_06435	SM00072	Guanylate kinase homologues.
EAE_06440	SM01409	EAE_06440
EAE_06445	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EAE_06445	SM00954	Region found in RelA / SpoT proteins
EAE_06455	SM00487	DEAD-like helicases superfamily
EAE_06455	SM00490	helicase superfamily c-terminal domain
EAE_06560	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_06665	SM00829	Enoylreductase
EAE_06675	SM00829	Enoylreductase
EAE_06680	SM00342	helix_turn_helix, arabinose operon control protein
EAE_06765	SM00342	helix_turn_helix, arabinose operon control protein
EAE_06775	SM01321	EAE_06775
EAE_06790	SM00354	helix_turn _helix lactose operon repressor
EAE_06820	SM00382	ATPases associated with a variety of cellular activities
EAE_06830	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_06830	SM00866	EAE_06830
EAE_06855	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_06875	SM00387	Histidine kinase-like ATPases
EAE_06880	SM00421	helix_turn_helix, Lux Regulon
EAE_06880	SM00448	cheY-homologous receiver domain
EAE_06950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_06950	SM00866	EAE_06950
EAE_06985	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EAE_07000	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_07000	SM00895	EAE_07000
EAE_07020	SM00387	Histidine kinase-like ATPases
EAE_07020	SM00433	TopoisomeraseII
EAE_07030	SM00480	DNA polymerase III beta subunit
EAE_07035	SM00382	ATPases associated with a variety of cellular activities
EAE_07035	SM00760	Bacterial dnaA protein helix-turn-helix domain
EAE_07050	SM01234	EAE_07050
EAE_07125	SM00382	ATPases associated with a variety of cellular activities
EAE_07165	SM00382	ATPases associated with a variety of cellular activities
EAE_07210	SM01228	EAE_07210
EAE_07220	SM00344	helix_turn_helix ASNC type
EAE_07230	SM00327	von Willebrand factor (vWF) type A domain
EAE_07235	SM00382	ATPases associated with a variety of cellular activities
EAE_07250	SM00382	ATPases associated with a variety of cellular activities
EAE_07270	SM00354	helix_turn _helix lactose operon repressor
EAE_07280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_07280	SM00895	EAE_07280
EAE_07310	SM00563	Phosphate acyltransferases
EAE_07315	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
EAE_07315	SM00474	3'-5' exonuclease
EAE_07315	SM00475	5'-3' exonuclease
EAE_07315	SM00482	DNA polymerase A domain
EAE_07335	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_07340	SM00382	ATPases associated with a variety of cellular activities
EAE_07340	SM00448	cheY-homologous receiver domain
EAE_07345	SM00091	PAS domain
EAE_07345	SM00387	Histidine kinase-like ATPases
EAE_07345	SM00388	His Kinase A (phosphoacceptor) domain
EAE_07350	SM01230	EAE_07350
EAE_07360	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_07360	SM00866	EAE_07360
EAE_07420	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_07445	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_07450	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_07455	SM01130	EAE_07455
EAE_07480	SM01007	Class II Aldolase and Adducin N-terminal domain
EAE_07500	SM00342	helix_turn_helix, arabinose operon control protein
EAE_07505	SM00342	helix_turn_helix, arabinose operon control protein
EAE_07525	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_07525	SM00387	Histidine kinase-like ATPases
EAE_07525	SM00388	His Kinase A (phosphoacceptor) domain
EAE_07530	SM00448	cheY-homologous receiver domain
EAE_07530	SM00862	Transcriptional regulatory protein, C terminal
EAE_07560	SM00382	ATPases associated with a variety of cellular activities
EAE_07560	SM01086	C-terminal, D2-small domain, of ClpB protein
EAE_07575	SM00354	helix_turn _helix lactose operon repressor
EAE_07580	SM00487	DEAD-like helicases superfamily
EAE_07580	SM00490	helicase superfamily c-terminal domain
EAE_07625	SM00342	helix_turn_helix, arabinose operon control protein
EAE_07645	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EAE_07705	SM00382	ATPases associated with a variety of cellular activities
EAE_07780	SM00487	DEAD-like helicases superfamily
EAE_07780	SM00490	helicase superfamily c-terminal domain
EAE_07790	SM00357	Cold shock protein domain
EAE_07790	SM00382	ATPases associated with a variety of cellular activities
EAE_07790	SM00959	Rho termination factor, N-terminal domain
EAE_07810	SM00984	UDP binding domain
EAE_07875	SM01219	EAE_07875
EAE_07935	SM00341	Helicase and RNase D C-terminal
EAE_07935	SM00487	DEAD-like helicases superfamily
EAE_07935	SM00490	helicase superfamily c-terminal domain
EAE_07935	SM00956	EAE_07935
EAE_08030	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
EAE_08100	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
EAE_08100	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
EAE_08105	SM00649	Ribosomal protein L11/L12
EAE_08130	SM00663	RNA polymerase I subunit A N-terminus
EAE_08150	SM00267	diguanylate cyclase
EAE_08155	SM00876	Biotin and Thiamin Synthesis associated domain
EAE_08210	SM00411	bacterial (prokaryotic) histone like domain
EAE_08225	SM00387	Histidine kinase-like ATPases
EAE_08225	SM00388	His Kinase A (phosphoacceptor) domain
EAE_08230	SM00382	ATPases associated with a variety of cellular activities
EAE_08230	SM00448	cheY-homologous receiver domain
EAE_08235	SM01209	EAE_08235
EAE_08235	SM01210	EAE_08235
EAE_08240	SM00798	AICARFT/IMPCHase bienzyme
EAE_08240	SM00851	MGS-like domain
EAE_08270	SM00346	helix_turn_helix isocitrate lyase regulation
EAE_08275	SM01018	B12 binding domain
EAE_08295	SM00363	S4 RNA-binding domain
EAE_08310	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_08320	SM00382	ATPases associated with a variety of cellular activities
EAE_08325	SM00244	prohibitin homologues
EAE_08395	SM00382	ATPases associated with a variety of cellular activities
EAE_08420	SM00563	Phosphate acyltransferases
EAE_08465	SM00829	Enoylreductase
EAE_08470	SM00382	ATPases associated with a variety of cellular activities
EAE_08475	SM01005	Alanine racemase, C-terminal domain
EAE_08535	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_08550	SM00052	Putative diguanylate phosphodiesterase
EAE_08555	SM00342	helix_turn_helix, arabinose operon control protein
EAE_08560	SM00422	helix_turn_helix, mercury resistance
EAE_08640	SM00671	Sel1-like repeats.
EAE_08655	SM00448	cheY-homologous receiver domain
EAE_08655	SM00862	Transcriptional regulatory protein, C terminal
EAE_08670	SM00382	ATPases associated with a variety of cellular activities
EAE_08675	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_08675	SM00387	Histidine kinase-like ATPases
EAE_08675	SM00388	His Kinase A (phosphoacceptor) domain
EAE_08675	SM00448	cheY-homologous receiver domain
EAE_08690	SM00072	Guanylate kinase homologues.
EAE_08700	SM00382	ATPases associated with a variety of cellular activities
EAE_08705	SM00382	ATPases associated with a variety of cellular activities
EAE_08730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_08730	SM00866	EAE_08730
EAE_08755	SM00342	helix_turn_helix, arabinose operon control protein
EAE_08785	SM00271	DnaJ molecular chaperone homology domain
EAE_08930	SM00014	Acid phosphatase homologues
EAE_08945	SM00342	helix_turn_helix, arabinose operon control protein
EAE_08990	SM01236	EAE_08990
EAE_09030	SM00912	haemagglutination activity domain
EAE_09130	SM00883	Chaperonin 10 Kd subunit
EAE_09150	SM00382	ATPases associated with a variety of cellular activities
EAE_09190	SM00862	Transcriptional regulatory protein, C terminal
EAE_09200	SM00841	Elongation factor P, C-terminal
EAE_09200	SM01185	EAE_09200
EAE_09275	SM00479	EAE_09275
EAE_09280	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_09300	SM00646	EAE_09300
EAE_09305	SM00853	MutL C terminal dimerisation domain
EAE_09305	SM01340	EAE_09305
EAE_09325	SM00244	prohibitin homologues
EAE_09330	SM00244	prohibitin homologues
EAE_09345	SM00788	Adenylosuccinate synthetase
EAE_09355	SM00316	Ribosomal protein S1-like RNA-binding domain
EAE_09355	SM00357	Cold shock protein domain
EAE_09355	SM00955	EAE_09355
EAE_09360	SM00967	RNA 2'-O ribose methyltransferase substrate binding
EAE_09390	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_09390	SM01134	EAE_09390
EAE_09415	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
EAE_09425	SM01007	Class II Aldolase and Adducin N-terminal domain
EAE_09490	SM00342	helix_turn_helix, arabinose operon control protein
EAE_09530	SM01091	Transporter associated domain
EAE_09565	SM00382	ATPases associated with a variety of cellular activities
EAE_09690	SM00642	Alpha-amylase domain
EAE_09700	SM00354	helix_turn _helix lactose operon repressor
EAE_09705	SM00831	Cation transporter/ATPase, N-terminus
EAE_09845	SM00382	ATPases associated with a variety of cellular activities
EAE_09865	SM00829	Enoylreductase
EAE_09875	SM00947	Carbonic anhydrase
EAE_09935	SM00487	DEAD-like helicases superfamily
EAE_09960	SM00477	DNA/RNA non-specific endonuclease
EAE_09960	SM00892	DNA/RNA non-specific endonuclease
EAE_09990	SM00448	cheY-homologous receiver domain
EAE_09990	SM00862	Transcriptional regulatory protein, C terminal
EAE_09995	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_09995	SM00387	Histidine kinase-like ATPases
EAE_09995	SM00388	His Kinase A (phosphoacceptor) domain
EAE_10000	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
EAE_10020	SM00382	ATPases associated with a variety of cellular activities
EAE_10030	SM00267	diguanylate cyclase
EAE_10060	SM00877	EAE_10060
EAE_10090	SM00877	EAE_10090
EAE_10095	SM00877	EAE_10095
EAE_10100	SM00877	EAE_10100
EAE_10110	SM00862	Transcriptional regulatory protein, C terminal
EAE_10150	SM00382	ATPases associated with a variety of cellular activities
EAE_10170	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_10180	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_10245	SM00833	Cobalamin synthesis protein cobW C-terminal domain
EAE_10265	SM00912	haemagglutination activity domain
EAE_10310	SM00903	Flavin reductase like domain
EAE_10320	SM00342	helix_turn_helix, arabinose operon control protein
EAE_10365	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_10390	SM00342	helix_turn_helix, arabinose operon control protein
EAE_10395	SM01130	EAE_10395
EAE_10415	SM01119	EAE_10415
EAE_10470	SM00382	ATPases associated with a variety of cellular activities
EAE_10495	SM00342	helix_turn_helix, arabinose operon control protein
EAE_10500	SM00421	helix_turn_helix, Lux Regulon
EAE_10505	SM00421	helix_turn_helix, Lux Regulon
EAE_10525	SM00267	diguanylate cyclase
EAE_10560	SM00749	bacterial OsmY and nodulation domain
EAE_10580	SM01133	EAE_10580
EAE_10585	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
EAE_10615	SM00382	ATPases associated with a variety of cellular activities
EAE_10620	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_10625	SM00382	ATPases associated with a variety of cellular activities
EAE_10645	SM00855	Phosphoglycerate mutase family
EAE_10650	SM00342	helix_turn_helix, arabinose operon control protein
EAE_10650	SM00871	Bacterial transcription activator, effector binding domain
EAE_10660	SM00448	cheY-homologous receiver domain
EAE_10660	SM00862	Transcriptional regulatory protein, C terminal
EAE_10665	SM00387	Histidine kinase-like ATPases
EAE_10665	SM00388	His Kinase A (phosphoacceptor) domain
EAE_10675	SM00448	cheY-homologous receiver domain
EAE_10675	SM00862	Transcriptional regulatory protein, C terminal
EAE_10715	SM00852	Probable molybdopterin binding domain
EAE_10735	SM00271	DnaJ molecular chaperone homology domain
EAE_10760	SM00636	EAE_10760
EAE_10840	SM00904	Riboflavin kinase
EAE_10910	SM00448	cheY-homologous receiver domain
EAE_10915	SM00091	PAS domain
EAE_10915	SM00387	Histidine kinase-like ATPases
EAE_10945	SM00764	Citrate lyase ligase C-terminal domain
EAE_10980	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
EAE_10985	SM00851	MGS-like domain
EAE_10985	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
EAE_10995	SM00869	Autotransporter beta-domain
EAE_11025	SM00650	Ribosomal RNA adenine dimethylases
EAE_11045	SM00271	DnaJ molecular chaperone homology domain
EAE_11050	SM00448	cheY-homologous receiver domain
EAE_11055	SM00091	PAS domain
EAE_11055	SM00387	Histidine kinase-like ATPases
EAE_11075	SM00487	DEAD-like helicases superfamily
EAE_11075	SM00490	helicase superfamily c-terminal domain
EAE_11080	SM00486	DNA polymerase type-B family
EAE_11085	SM01007	Class II Aldolase and Adducin N-terminal domain
EAE_11100	SM00342	helix_turn_helix, arabinose operon control protein
EAE_11110	SM00382	ATPases associated with a variety of cellular activities
EAE_11180	SM01329	EAE_11180
EAE_11185	SM00917	LeuA allosteric (dimerisation) domain
EAE_11210	SM00354	helix_turn _helix lactose operon repressor
EAE_11280	SM00842	Cell division protein FtsA
EAE_11285	SM00864	Tubulin/FtsZ family, GTPase domain
EAE_11285	SM00865	Tubulin/FtsZ family, C-terminal domain
EAE_11300	SM00957	SecA DEAD-like domain
EAE_11300	SM00958	SecA preprotein cross-linking domain
EAE_11325	SM01240	EAE_11325
EAE_11335	SM00382	ATPases associated with a variety of cellular activities
EAE_11350	SM00644	EAE_11350
EAE_11375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_11375	SM00895	EAE_11375
EAE_11450	SM00564	beta-propeller repeat
EAE_11460	SM00947	Carbonic anhydrase
EAE_11465	SM00382	ATPases associated with a variety of cellular activities
EAE_11530	SM00487	DEAD-like helicases superfamily
EAE_11530	SM00490	helicase superfamily c-terminal domain
EAE_11530	SM00847	Helicase associated domain (HA2)  Add an annotation
EAE_11555	SM00382	ATPases associated with a variety of cellular activities
EAE_11600	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EAE_11605	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EAE_11615	SM01276	EAE_11615
EAE_11630	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EAE_11675	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EAE_11685	SM00935	Outer membrane protein (OmpH-like)
EAE_11715	SM00481	DNA polymerase alpha chain like domain
EAE_11725	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
EAE_11740	SM00977	TilS substrate C-terminal domain
EAE_11755	SM01322	EAE_11755
EAE_11795	SM00382	ATPases associated with a variety of cellular activities
EAE_11795	SM00930	EAE_11795
EAE_11830	SM00257	Lysin motif
EAE_11835	SM00849	Metallo-beta-lactamase superfamily
EAE_11850	SM00479	EAE_11850
EAE_11900	SM00900	EAE_11900
EAE_12060	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_12060	SM00895	EAE_12060
EAE_12090	SM00052	Putative diguanylate phosphodiesterase
EAE_12155	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
EAE_12170	SM00342	helix_turn_helix, arabinose operon control protein
EAE_12200	SM00382	ATPases associated with a variety of cellular activities
EAE_12205	SM00421	helix_turn_helix, Lux Regulon
EAE_12260	SM00382	ATPases associated with a variety of cellular activities
EAE_12265	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_12265	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EAE_12285	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_12290	SM00382	ATPases associated with a variety of cellular activities
EAE_12305	SM00563	Phosphate acyltransferases
EAE_12315	SM01321	EAE_12315
EAE_12320	SM01004	Delta-aminolevulinic acid dehydratase
EAE_12370	SM00098	Alkaline phosphatase homologues
EAE_12435	SM00448	cheY-homologous receiver domain
EAE_12435	SM00862	Transcriptional regulatory protein, C terminal
EAE_12440	SM00091	PAS domain
EAE_12440	SM00387	Histidine kinase-like ATPases
EAE_12440	SM00388	His Kinase A (phosphoacceptor) domain
EAE_12455	SM00642	Alpha-amylase domain
EAE_12500	SM01323	EAE_12500
EAE_12570	SM00861	Transketolase, pyrimidine binding domain
EAE_12585	SM00981	EAE_12585
EAE_12610	SM00912	haemagglutination activity domain
EAE_12625	SM00822	EAE_12625
EAE_12645	SM00825	Beta-ketoacyl synthase
EAE_12650	SM00825	Beta-ketoacyl synthase
EAE_12660	SM00382	ATPases associated with a variety of cellular activities
EAE_12685	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
EAE_12770	SM00382	ATPases associated with a variety of cellular activities
EAE_12770	SM00994	ClpX C4-type zinc finger
EAE_12770	SM01086	C-terminal, D2-small domain, of ClpB protein
EAE_12775	SM00382	ATPases associated with a variety of cellular activities
EAE_12775	SM00464	Found in ATP-dependent protease La (LON)
EAE_12780	SM00411	bacterial (prokaryotic) histone like domain
EAE_12795	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EAE_12825	SM00344	helix_turn_helix ASNC type
EAE_12830	SM00382	ATPases associated with a variety of cellular activities
EAE_12835	SM00382	ATPases associated with a variety of cellular activities
EAE_12840	SM00938	Nitrogen regulatory protein P-II
EAE_12890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_12905	SM00052	Putative diguanylate phosphodiesterase
EAE_12925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_12935	SM01266	EAE_12935
EAE_12990	SM00382	ATPases associated with a variety of cellular activities
EAE_13000	SM00493	EAE_13000
EAE_13005	SM00387	Histidine kinase-like ATPases
EAE_13055	SM00422	helix_turn_helix, mercury resistance
EAE_13065	SM00244	prohibitin homologues
EAE_13070	SM00382	ATPases associated with a variety of cellular activities
EAE_13085	SM00822	EAE_13085
EAE_13095	SM00382	ATPases associated with a variety of cellular activities
EAE_13110	SM00450	Rhodanese Homology Domain
EAE_13120	SM01001	AIR carboxylase
EAE_13135	SM00840	EAE_13135
EAE_13205	SM00869	Autotransporter beta-domain
EAE_13240	SM00862	Transcriptional regulatory protein, C terminal
EAE_13290	SM00248	ankyrin repeats
EAE_13340	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_13355	SM00822	EAE_13355
EAE_13370	SM00421	helix_turn_helix, Lux Regulon
EAE_13390	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_13455	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_13480	SM00849	Metallo-beta-lactamase superfamily
EAE_13485	SM00342	helix_turn_helix, arabinose operon control protein
EAE_13495	SM00831	Cation transporter/ATPase, N-terminus
EAE_13565	SM00382	ATPases associated with a variety of cellular activities
EAE_13595	SM00861	Transketolase, pyrimidine binding domain
EAE_13610	SM00923	MbtH-like protein
EAE_13615	SM00823	Phosphopantetheine attachment site
EAE_13615	SM00824	Thioesterase
EAE_13620	SM00382	ATPases associated with a variety of cellular activities
EAE_13640	SM00636	EAE_13640
EAE_13665	SM00822	EAE_13665
EAE_13685	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_13695	SM00822	EAE_13695
EAE_13700	SM00382	ATPases associated with a variety of cellular activities
EAE_13725	SM01007	Class II Aldolase and Adducin N-terminal domain
EAE_13745	SM00470	ParB-like nuclease domain
EAE_13805	SM00357	Cold shock protein domain
EAE_13825	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_13845	SM00936	Penicillin-binding protein 5, C-terminal domain 
EAE_13875	SM00855	Phosphoglycerate mutase family
EAE_13905	SM00912	haemagglutination activity domain
EAE_13915	SM00382	ATPases associated with a variety of cellular activities
EAE_13930	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_13940	SM00116	Domain in cystathionine beta-synthase and other proteins.
EAE_13940	SM01091	Transporter associated domain
EAE_13955	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_14065	SM00448	cheY-homologous receiver domain
EAE_14065	SM00862	Transcriptional regulatory protein, C terminal
EAE_14070	SM00387	Histidine kinase-like ATPases
EAE_14070	SM00388	His Kinase A (phosphoacceptor) domain
EAE_14110	SM00796	Allophanate hydrolase subunit 1
EAE_14115	SM00797	Allophanate hydrolase subunit 2
EAE_14140	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
EAE_14140	SM01232	EAE_14140
EAE_14170	SM00861	Transketolase, pyrimidine binding domain
EAE_14185	SM00881	CoA binding domain
EAE_14280	SM00855	Phosphoglycerate mutase family
EAE_14305	SM00382	ATPases associated with a variety of cellular activities
EAE_14330	SM00382	ATPases associated with a variety of cellular activities
EAE_14360	SM00052	Putative diguanylate phosphodiesterase
EAE_14360	SM01034	Sensors of blue-light using FAD
EAE_14365	SM00422	helix_turn_helix, mercury resistance
EAE_14370	SM00421	helix_turn_helix, Lux Regulon
EAE_14395	SM00028	Tetratricopeptide repeats
EAE_14415	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_14415	SM00866	EAE_14415
EAE_14445	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_14445	SM00876	Biotin and Thiamin Synthesis associated domain
EAE_14465	SM00487	DEAD-like helicases superfamily
EAE_14465	SM00490	helicase superfamily c-terminal domain
EAE_14475	SM00387	Histidine kinase-like ATPases
EAE_14475	SM00388	His Kinase A (phosphoacceptor) domain
EAE_14480	SM00448	cheY-homologous receiver domain
EAE_14480	SM00862	Transcriptional regulatory protein, C terminal
EAE_14495	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_14500	SM00852	Probable molybdopterin binding domain
EAE_14530	SM00155	Phospholipase D. Active site motifs.
EAE_14555	SM00382	ATPases associated with a variety of cellular activities
EAE_14570	SM00487	DEAD-like helicases superfamily
EAE_14570	SM00490	helicase superfamily c-terminal domain
EAE_14575	SM00487	DEAD-like helicases superfamily
EAE_14575	SM00488	EAE_14575
EAE_14575	SM00491	EAE_14575
EAE_14600	SM00903	Flavin reductase like domain
EAE_14615	SM00382	ATPases associated with a variety of cellular activities
EAE_14625	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_14625	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EAE_14655	SM00529	Helix-turn-helix diphteria tox regulatory element
EAE_14675	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_14675	SM00866	EAE_14675
EAE_14690	SM00382	ATPases associated with a variety of cellular activities
EAE_14705	SM00354	helix_turn _helix lactose operon repressor
EAE_14735	SM00852	Probable molybdopterin binding domain
EAE_14745	SM00382	ATPases associated with a variety of cellular activities
EAE_14765	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_14785	SM00936	Penicillin-binding protein 5, C-terminal domain 
EAE_14790	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_14790	SM01134	EAE_14790
EAE_14795	SM00014	Acid phosphatase homologues
EAE_14880	SM00382	ATPases associated with a variety of cellular activities
EAE_14905	SM00448	cheY-homologous receiver domain
EAE_14905	SM00862	Transcriptional regulatory protein, C terminal
EAE_14910	SM00387	Histidine kinase-like ATPases
EAE_14910	SM00388	His Kinase A (phosphoacceptor) domain
EAE_14915	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_14915	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EAE_14930	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_14930	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EAE_14935	SM00382	ATPases associated with a variety of cellular activities
EAE_14955	SM00267	diguanylate cyclase
EAE_14960	SM00644	EAE_14960
EAE_15025	SM00382	ATPases associated with a variety of cellular activities
EAE_15030	SM00357	Cold shock protein domain
EAE_15040	SM00382	ATPases associated with a variety of cellular activities
EAE_15040	SM01086	C-terminal, D2-small domain, of ClpB protein
EAE_15045	SM00316	Ribosomal protein S1-like RNA-binding domain
EAE_15055	SM00382	ATPases associated with a variety of cellular activities
EAE_15060	SM00382	ATPases associated with a variety of cellular activities
EAE_15070	SM00344	helix_turn_helix ASNC type
EAE_15075	SM00843	EAE_15075
EAE_15085	SM00382	ATPases associated with a variety of cellular activities
EAE_15095	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_15155	SM00316	Ribosomal protein S1-like RNA-binding domain
EAE_15160	SM00411	bacterial (prokaryotic) histone like domain
EAE_15165	SM00849	Metallo-beta-lactamase superfamily
EAE_15170	SM00382	ATPases associated with a variety of cellular activities
EAE_15235	SM00849	Metallo-beta-lactamase superfamily
EAE_15265	SM00382	ATPases associated with a variety of cellular activities
EAE_15280	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_15305	SM00981	EAE_15305
EAE_15310	SM00382	ATPases associated with a variety of cellular activities
EAE_15380	SM00851	MGS-like domain
EAE_15385	SM00881	CoA binding domain
EAE_15405	SM00382	ATPases associated with a variety of cellular activities
EAE_15425	SM00992	Hemimethylated DNA-binding protein YccV like
EAE_15430	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
EAE_15475	SM00947	Carbonic anhydrase
EAE_15480	SM01116	EAE_15480
EAE_15485	SM00354	helix_turn _helix lactose operon repressor
EAE_15490	SM00640	Glycosyl hydrolases family 32
EAE_15525	SM00073	Histidine Phosphotransfer domain
EAE_15525	SM00260	Two component signalling adaptor domain
EAE_15525	SM00387	Histidine kinase-like ATPases
EAE_15525	SM01231	EAE_15525
EAE_15530	SM00260	Two component signalling adaptor domain
EAE_15535	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EAE_15535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_15535	SM00319	Homologues of the ligand binding domain of Tar
EAE_15540	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EAE_15540	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_15540	SM00319	Homologues of the ligand binding domain of Tar
EAE_15545	SM00138	Methyltransferase, chemotaxis proteins 
EAE_15550	SM00448	cheY-homologous receiver domain
EAE_15555	SM00448	cheY-homologous receiver domain
EAE_15590	SM00858	EAE_15590
EAE_15635	SM00047	Lysozyme subfamily 2
EAE_15650	SM00422	helix_turn_helix, mercury resistance
EAE_15685	SM00346	helix_turn_helix isocitrate lyase regulation
EAE_15715	SM00342	helix_turn_helix, arabinose operon control protein
EAE_15770	SM00382	ATPases associated with a variety of cellular activities
EAE_15870	SM00382	ATPases associated with a variety of cellular activities
EAE_15900	SM01329	EAE_15900
EAE_15925	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_15935	SM01230	EAE_15935
EAE_16010	SM00903	Flavin reductase like domain
EAE_16200	SM00481	DNA polymerase alpha chain like domain
EAE_16225	SM00506	Appr-1"-p processing enzyme
EAE_16265	SM00450	Rhodanese Homology Domain
EAE_16335	SM00316	Ribosomal protein S1-like RNA-binding domain
EAE_16340	SM00363	S4 RNA-binding domain
EAE_16370	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
EAE_16375	SM00822	EAE_16375
EAE_16385	SM00825	Beta-ketoacyl synthase
EAE_16480	SM00257	Lysin motif
EAE_16485	SM00487	DEAD-like helicases superfamily
EAE_16485	SM00490	helicase superfamily c-terminal domain
EAE_16485	SM00982	EAE_16485
EAE_16485	SM01058	CarD-like/TRCF domain
EAE_16495	SM00382	ATPases associated with a variety of cellular activities
EAE_16535	SM00382	ATPases associated with a variety of cellular activities
EAE_16545	SM01321	EAE_16545
EAE_16550	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
EAE_16555	SM00387	Histidine kinase-like ATPases
EAE_16560	SM00448	cheY-homologous receiver domain
EAE_16560	SM00862	Transcriptional regulatory protein, C terminal
EAE_16590	SM01329	EAE_16590
EAE_16600	SM00507	HNH nucleases
EAE_16610	SM00422	helix_turn_helix, mercury resistance
EAE_16620	SM00342	helix_turn_helix, arabinose operon control protein
EAE_16710	SM01400	EAE_16710
EAE_16730	SM00937	EAE_16730
EAE_16780	SM01012	EAE_16780
EAE_16795	SM00382	ATPases associated with a variety of cellular activities
EAE_16805	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_16815	SM00421	helix_turn_helix, Lux Regulon
EAE_16815	SM00448	cheY-homologous receiver domain
EAE_16820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_16820	SM00387	Histidine kinase-like ATPases
EAE_16830	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_16855	SM00344	helix_turn_helix ASNC type
EAE_16875	SM00448	cheY-homologous receiver domain
EAE_16885	SM00528	Domain in histone-like proteins of HNS family
EAE_16920	SM00382	ATPases associated with a variety of cellular activities
EAE_16925	SM00382	ATPases associated with a variety of cellular activities
EAE_16940	SM00155	Phospholipase D. Active site motifs.
EAE_16975	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
EAE_17000	SM00873	B3/4 domain
EAE_17000	SM00874	tRNA synthetase B5 domain
EAE_17000	SM00896	Ferredoxin-fold anticodon binding domain
EAE_17005	SM00411	bacterial (prokaryotic) histone like domain
EAE_17045	SM00382	ATPases associated with a variety of cellular activities
EAE_17120	SM00849	Metallo-beta-lactamase superfamily
EAE_17135	SM00382	ATPases associated with a variety of cellular activities
EAE_17200	SM00382	ATPases associated with a variety of cellular activities
EAE_17225	SM00450	Rhodanese Homology Domain
EAE_17250	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_17265	SM00382	ATPases associated with a variety of cellular activities
EAE_17275	SM00382	ATPases associated with a variety of cellular activities
EAE_17300	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_17300	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EAE_17310	SM00382	ATPases associated with a variety of cellular activities
EAE_17330	SM00822	EAE_17330
EAE_17375	SM00342	helix_turn_helix, arabinose operon control protein
EAE_17400	SM01022	EAE_17400
EAE_17410	SM00855	Phosphoglycerate mutase family
EAE_17415	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_17430	SM00342	helix_turn_helix, arabinose operon control protein
EAE_17440	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_17460	SM00382	ATPases associated with a variety of cellular activities
EAE_17490	SM00822	EAE_17490
EAE_17530	SM00882	Coenzyme A transferase
EAE_17535	SM00882	Coenzyme A transferase
EAE_17560	SM00564	beta-propeller repeat
EAE_17570	SM00382	ATPases associated with a variety of cellular activities
EAE_17575	SM00382	ATPases associated with a variety of cellular activities
EAE_17595	SM01059	Chloramphenicol acetyltransferase
EAE_17605	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_17605	SM01134	EAE_17605
EAE_17610	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
EAE_17610	SM01092	CO dehydrogenase flavoprotein C-terminal domain
EAE_17705	SM00091	PAS domain
EAE_17705	SM00382	ATPases associated with a variety of cellular activities
EAE_17720	SM00947	Carbonic anhydrase
EAE_17740	SM00873	B3/4 domain
EAE_17745	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_17785	SM00354	helix_turn _helix lactose operon repressor
EAE_17800	SM00342	helix_turn_helix, arabinose operon control protein
EAE_17815	SM00479	EAE_17815
EAE_17865	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_17870	SM00267	diguanylate cyclase
EAE_17895	SM00363	S4 RNA-binding domain
EAE_17920	SM00478	endonuclease III
EAE_17920	SM00525	EAE_17920
EAE_17930	SM00900	EAE_17930
EAE_17995	SM00422	helix_turn_helix, mercury resistance
EAE_18030	SM00354	helix_turn _helix lactose operon repressor
EAE_18070	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_18070	SM00387	Histidine kinase-like ATPases
EAE_18070	SM00388	His Kinase A (phosphoacceptor) domain
EAE_18080	SM00448	cheY-homologous receiver domain
EAE_18080	SM00862	Transcriptional regulatory protein, C terminal
EAE_18105	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
EAE_18105	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
EAE_18125	SM00100	Cyclic nucleotide-monophosphate binding domain
EAE_18125	SM00419	helix_turn_helix, cAMP Regulatory protein
EAE_18160	SM00463	Small MutS-related domain
EAE_18165	SM00346	helix_turn_helix isocitrate lyase regulation
EAE_18170	SM00882	Coenzyme A transferase
EAE_18175	SM00882	Coenzyme A transferase
EAE_18185	SM00998	Adenylosuccinate lyase C-terminus
EAE_18220	SM00900	EAE_18220
EAE_18230	SM00448	cheY-homologous receiver domain
EAE_18235	SM00387	Histidine kinase-like ATPases
EAE_18255	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
EAE_18315	SM00052	Putative diguanylate phosphodiesterase
EAE_18315	SM00267	diguanylate cyclase
EAE_18385	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_18420	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EAE_18425	SM00829	Enoylreductase
EAE_18445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_18445	SM00895	EAE_18445
EAE_18475	SM01038	Beta galactosidase small chain
EAE_18480	SM00354	helix_turn _helix lactose operon repressor
EAE_18495	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EAE_18495	SM00267	diguanylate cyclase
EAE_18510	SM00342	helix_turn_helix, arabinose operon control protein
EAE_18515	SM00450	Rhodanese Homology Domain
EAE_18525	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_18545	SM00342	helix_turn_helix, arabinose operon control protein
EAE_18550	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_18590	SM01130	EAE_18590
EAE_18610	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_18610	SM01134	EAE_18610
EAE_18635	SM00267	diguanylate cyclase
EAE_18680	SM01007	Class II Aldolase and Adducin N-terminal domain
EAE_18690	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_18690	SM01134	EAE_18690
EAE_18700	SM00849	Metallo-beta-lactamase superfamily
EAE_18730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_18755	SM00382	ATPases associated with a variety of cellular activities
EAE_18775	SM00342	helix_turn_helix, arabinose operon control protein
EAE_18790	SM00829	Enoylreductase
EAE_18845	SM00116	Domain in cystathionine beta-synthase and other proteins.
EAE_18905	SM00421	helix_turn_helix, Lux Regulon
EAE_18905	SM00448	cheY-homologous receiver domain
EAE_18910	SM00387	Histidine kinase-like ATPases
EAE_18910	SM00388	His Kinase A (phosphoacceptor) domain
EAE_18925	SM00855	Phosphoglycerate mutase family
EAE_18975	SM00354	helix_turn _helix lactose operon repressor
EAE_19080	SM00862	Transcriptional regulatory protein, C terminal
EAE_19105	SM00421	helix_turn_helix, Lux Regulon
EAE_19130	SM00382	ATPases associated with a variety of cellular activities
EAE_19145	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_19185	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_19185	SM00895	EAE_19185
EAE_19350	SM00382	ATPases associated with a variety of cellular activities
EAE_19350	SM01086	C-terminal, D2-small domain, of ClpB protein
EAE_19380	SM00331	Sigma factor PP2C-like phosphatases
EAE_19380	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
EAE_19505	SM00382	ATPases associated with a variety of cellular activities
EAE_19535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_19535	SM00387	Histidine kinase-like ATPases
EAE_19535	SM00388	His Kinase A (phosphoacceptor) domain
EAE_19540	SM00448	cheY-homologous receiver domain
EAE_19540	SM00862	Transcriptional regulatory protein, C terminal
EAE_19575	SM00729	Elongator protein 3, MiaB family, Radical SAM
EAE_19635	SM00831	Cation transporter/ATPase, N-terminus
EAE_19715	SM00849	Metallo-beta-lactamase superfamily
EAE_19725	SM00919	Malic enzyme, NAD binding domain
EAE_19725	SM01274	EAE_19725
EAE_19750	SM00382	ATPases associated with a variety of cellular activities
EAE_19755	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_19760	SM00829	Enoylreductase
EAE_19780	SM00382	ATPases associated with a variety of cellular activities
EAE_19800	SM00382	ATPases associated with a variety of cellular activities
EAE_19805	SM00382	ATPases associated with a variety of cellular activities
EAE_19870	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_19880	SM00822	EAE_19880
EAE_19910	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EAE_19915	SM00346	helix_turn_helix isocitrate lyase regulation
EAE_19935	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_19960	SM00903	Flavin reductase like domain
EAE_19965	SM00421	helix_turn_helix, Lux Regulon
EAE_19970	SM00862	Transcriptional regulatory protein, C terminal
EAE_19995	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_20000	SM00382	ATPases associated with a variety of cellular activities
EAE_20015	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_20070	SM00829	Enoylreductase
EAE_20075	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_20145	SM00382	ATPases associated with a variety of cellular activities
EAE_20155	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_20185	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_20195	SM00342	helix_turn_helix, arabinose operon control protein
EAE_20245	SM00829	Enoylreductase
EAE_20250	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_20280	SM01150	EAE_20280
EAE_20300	SM00564	beta-propeller repeat
EAE_20315	SM00829	Enoylreductase
EAE_20345	SM00382	ATPases associated with a variety of cellular activities
EAE_20370	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
EAE_20410	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
EAE_20415	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_20440	SM00382	ATPases associated with a variety of cellular activities
EAE_20440	SM00487	DEAD-like helicases superfamily
EAE_20440	SM00490	helicase superfamily c-terminal domain
EAE_20440	SM00847	Helicase associated domain (HA2)  Add an annotation
EAE_20535	SM00829	Enoylreductase
EAE_20550	SM00342	helix_turn_helix, arabinose operon control protein
EAE_20590	SM00890	Domain of unknown function
EAE_20610	SM00487	DEAD-like helicases superfamily
EAE_20610	SM00490	helicase superfamily c-terminal domain
EAE_20655	SM00382	ATPases associated with a variety of cellular activities
EAE_20660	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_20660	SM01134	EAE_20660
EAE_20750	SM00382	ATPases associated with a variety of cellular activities
EAE_20750	SM01086	C-terminal, D2-small domain, of ClpB protein
EAE_20825	SM00354	helix_turn _helix lactose operon repressor
EAE_20840	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EAE_20855	SM00091	PAS domain
EAE_20855	SM00382	ATPases associated with a variety of cellular activities
EAE_20890	SM00382	ATPases associated with a variety of cellular activities
EAE_20905	SM00342	helix_turn_helix, arabinose operon control protein
EAE_20955	SM01068	Putative carbohydrate binding domain
EAE_20960	SM00357	Cold shock protein domain
EAE_20965	SM00357	Cold shock protein domain
EAE_20975	SM00855	Phosphoglycerate mutase family
EAE_21045	SM00635	Bacterial Ig-like domain 2
EAE_21200	SM00530	Helix-turn-helix XRE-family like proteins 
EAE_21250	SM00382	ATPases associated with a variety of cellular activities
EAE_21255	SM00382	ATPases associated with a variety of cellular activities
EAE_21280	SM00357	Cold shock protein domain
EAE_21280	SM00955	EAE_21280
EAE_21290	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_21290	SM01134	EAE_21290
EAE_21305	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
EAE_21310	SM00028	Tetratricopeptide repeats
EAE_21320	SM00014	Acid phosphatase homologues
EAE_21345	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
EAE_21345	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
EAE_21345	SM00493	EAE_21345
EAE_21365	SM00822	EAE_21365
EAE_21375	SM00342	helix_turn_helix, arabinose operon control protein
EAE_21380	SM01217	EAE_21380
EAE_21390	SM00363	S4 RNA-binding domain
EAE_21395	SM00052	Putative diguanylate phosphodiesterase
EAE_21400	SM00052	Putative diguanylate phosphodiesterase
EAE_21410	SM00481	DNA polymerase alpha chain like domain
EAE_21440	SM00347	helix_turn_helix multiple antibiotic resistance protein
EAE_21445	SM00829	Enoylreductase
EAE_21525	SM01060	EAE_21525
EAE_21540	SM00342	helix_turn_helix, arabinose operon control protein
EAE_21570	SM00465	GIY-YIG type nucleases (URI domain)
EAE_21635	SM00382	ATPases associated with a variety of cellular activities
EAE_21640	SM00450	Rhodanese Homology Domain
EAE_21655	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
EAE_21660	SM00829	Enoylreductase
EAE_21670	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
EAE_21670	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
EAE_21670	SM00493	EAE_21670
EAE_21680	SM00014	Acid phosphatase homologues
EAE_21695	SM00870	EAE_21695
EAE_21705	SM00636	EAE_21705
EAE_21720	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
EAE_21735	SM00763	PrkA AAA domain
EAE_21745	SM00267	diguanylate cyclase
EAE_21760	SM00342	helix_turn_helix, arabinose operon control protein
EAE_21785	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EAE_21785	SM00267	diguanylate cyclase
EAE_21815	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EAE_21840	SM00091	PAS domain
EAE_21840	SM00267	diguanylate cyclase
EAE_22020	SM00382	ATPases associated with a variety of cellular activities
EAE_22065	SM00342	helix_turn_helix, arabinose operon control protein
EAE_22090	SM01091	Transporter associated domain
EAE_22095	SM01005	Alanine racemase, C-terminal domain
EAE_22110	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EAE_22230	SM01040	BRO family, N-terminal domain
EAE_22250	SM00635	Bacterial Ig-like domain 2
EAE_22545	SM00341	Helicase and RNase D C-terminal
EAE_22545	SM00474	3'-5' exonuclease
EAE_22565	SM00487	DEAD-like helicases superfamily
EAE_22565	SM00491	EAE_22565
EAE_22595	SM00052	Putative diguanylate phosphodiesterase
EAE_22600	SM01091	Transporter associated domain
EAE_22640	SM00357	Cold shock protein domain
EAE_22660	SM00346	helix_turn_helix isocitrate lyase regulation
EAE_22675	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EAE_22675	SM00245	tail specific protease
EAE_22680	SM00945	ProQ/FINO family
EAE_22685	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EAE_22730	SM00972	Spore Coat Protein U domain
EAE_22735	SM00972	Spore Coat Protein U domain
EAE_22750	SM00972	Spore Coat Protein U domain
EAE_22775	SM00479	EAE_22775
EAE_22830	SM00257	Lysin motif
EAE_22840	SM00382	ATPases associated with a variety of cellular activities
EAE_22850	SM00382	ATPases associated with a variety of cellular activities
EAE_22855	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EAE_22915	SM00836	DALR anticodon binding domain
EAE_22915	SM01016	Arginyl tRNA synthetase N terminal dom
EAE_22955	SM00382	ATPases associated with a variety of cellular activities
EAE_23010	SM01130	EAE_23010
EAE_23020	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EAE_23020	SM00465	GIY-YIG type nucleases (URI domain)
EAE_23025	SM00421	helix_turn_helix, Lux Regulon
EAE_23025	SM00448	cheY-homologous receiver domain
EAE_23035	SM00421	helix_turn_helix, Lux Regulon
EAE_23040	SM00382	ATPases associated with a variety of cellular activities
EAE_23055	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_23055	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EAE_23060	SM00642	Alpha-amylase domain
EAE_23070	SM00421	helix_turn_helix, Lux Regulon
EAE_23085	SM00267	diguanylate cyclase
EAE_23115	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EAE_23140	SM00382	ATPases associated with a variety of cellular activities
EAE_23265	SM00052	Putative diguanylate phosphodiesterase
EAE_23265	SM00267	diguanylate cyclase
EAE_23290	SM00996	S-adenosyl-L-homocysteine hydrolase
EAE_23290	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
EAE_23320	SM00871	Bacterial transcription activator, effector binding domain
EAE_23325	SM00936	Penicillin-binding protein 5, C-terminal domain 
EAE_23340	SM00479	EAE_23340
EAE_23345	SM00838	Elongation factor G C-terminus
EAE_23345	SM00889	Elongation factor G, domain IV
EAE_23350	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
EAE_23440	SM00984	UDP binding domain
EAE_23480	SM01350	EAE_23480
EAE_23525	SM00226	Low molecular weight phosphatase family
EAE_23540	SM00014	Acid phosphatase homologues
EAE_23555	SM01091	Transporter associated domain
EAE_23610	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_23610	SM00387	Histidine kinase-like ATPases
EAE_23610	SM00388	His Kinase A (phosphoacceptor) domain
EAE_23615	SM00448	cheY-homologous receiver domain
EAE_23615	SM00862	Transcriptional regulatory protein, C terminal
EAE_23625	SM00046	Diacylglycerol kinase catalytic domain (presumed)
EAE_23650	SM00354	helix_turn _helix lactose operon repressor
EAE_23670	SM01133	EAE_23670
EAE_23700	SM00849	Metallo-beta-lactamase superfamily
EAE_23710	SM00849	Metallo-beta-lactamase superfamily
EAE_23775	SM00448	cheY-homologous receiver domain
EAE_23775	SM00850	LytTr DNA-binding domain
EAE_23780	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EAE_23785	SM00422	helix_turn_helix, mercury resistance
EAE_23800	SM00382	ATPases associated with a variety of cellular activities
EAE_23815	SM01217	EAE_23815
EAE_23865	SM01061	CAT RNA binding domain
EAE_23945	SM00354	helix_turn _helix lactose operon repressor
EAE_23965	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
EAE_24010	SM00518	AP endonuclease family 2
EAE_24045	SM00841	Elongation factor P, C-terminal
EAE_24045	SM01185	EAE_24045
EAE_24060	SM00833	Cobalamin synthesis protein cobW C-terminal domain
EAE_24065	SM00014	Acid phosphatase homologues
EAE_24075	SM00052	Putative diguanylate phosphodiesterase
EAE_24095	SM00382	ATPases associated with a variety of cellular activities
EAE_24110	SM00363	S4 RNA-binding domain
EAE_24115	SM00487	DEAD-like helicases superfamily
EAE_24115	SM00490	helicase superfamily c-terminal domain
EAE_24140	SM00420	helix_turn_helix, Deoxyribose operon repressor
EAE_24140	SM01134	EAE_24140
EAE_24180	SM00924	MgtE intracellular N domain
EAE_24185	SM00382	ATPases associated with a variety of cellular activities
EAE_24195	SM00342	helix_turn_helix, arabinose operon control protein
EAE_24215	SM00387	Histidine kinase-like ATPases
EAE_24220	SM00421	helix_turn_helix, Lux Regulon
EAE_24220	SM00448	cheY-homologous receiver domain
EAE_24225	SM00387	Histidine kinase-like ATPases
EAE_24225	SM00388	His Kinase A (phosphoacceptor) domain
EAE_24225	SM00448	cheY-homologous receiver domain
EAE_24230	SM00434	DNA Topoisomerase IV
EAE_24280	SM00852	Probable molybdopterin binding domain
EAE_24295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EAE_24295	SM00387	Histidine kinase-like ATPases
EAE_24295	SM00388	His Kinase A (phosphoacceptor) domain
EAE_24300	SM00448	cheY-homologous receiver domain
EAE_24300	SM00862	Transcriptional regulatory protein, C terminal
EAE_24325	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EAE_24405	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EAE_24405	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
EAE_24410	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
EAE_24445	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EAE_24500	SM00905	Dihydroneopterin aldolase
EAE_24525	SM00382	ATPases associated with a variety of cellular activities
EAE_24540	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_24545	SM00062	Bacterial periplasmic substrate-binding proteins
EAE_24595	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EAE_24615	SM00825	Beta-ketoacyl synthase
EAE_24655	SM00463	Small MutS-related domain
EAE_24720	SM00972	Spore Coat Protein U domain
EAE_24725	SM00862	Transcriptional regulatory protein, C terminal
EAE_24785	SM00421	helix_turn_helix, Lux Regulon
EAE_24790	SM00052	Putative diguanylate phosphodiesterase
