locus-tag class description CKQ55_RS00010 PF05869 DNA N-6-adenine-methyltransferase (Dam) CKQ55_RS00020 PF03354 Phage Terminase CKQ55_RS00065 PF10065 Uncharacterized conserved protein (DUF2303) CKQ55_RS00120 PF00589 Phage integrase family CKQ55_RS00120 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain CKQ55_RS00125 PF00180 Isocitrate/isopropylmalate dehydrogenase CKQ55_RS00145 PF02463 RecF/RecN/SMC N terminal domain CKQ55_RS00150 PF00817 impB/mucB/samB family CKQ55_RS00150 PF13438 Domain of unknown function (DUF4113) CKQ55_RS00150 PF11798 IMS family HHH motif CKQ55_RS00150 PF11799 impB/mucB/samB family C-terminal domain CKQ55_RS00155 PF00717 Peptidase S24-like CKQ55_RS00160 PF06183 DinI-like family CKQ55_RS00170 PF00239 Resolvase, N terminal domain CKQ55_RS00170 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS00270 PF04860 Phage portal protein CKQ55_RS00275 PF03354 Phage Terminase CKQ55_RS00340 PF01555 DNA methylase CKQ55_RS00340 PF01555 DNA methylase CKQ55_RS00350 PF03589 Antitermination protein CKQ55_RS00355 PF06147 Protein of unknown function (DUF968) CKQ55_RS00365 PF05866 Endodeoxyribonuclease RusA CKQ55_RS00370 PF01726 LexA DNA binding domain CKQ55_RS00370 PF00717 Peptidase S24-like CKQ55_RS00375 PF00145 C-5 cytosine-specific DNA methylase CKQ55_RS00380 PF05869 DNA N-6-adenine-methyltransferase (Dam) CKQ55_RS00390 PF03354 Phage Terminase CKQ55_RS00435 PF10065 Uncharacterized conserved protein (DUF2303) CKQ55_RS00490 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain CKQ55_RS00490 PF00589 Phage integrase family CKQ55_RS00495 PF00180 Isocitrate/isopropylmalate dehydrogenase CKQ55_RS00500 PF00849 RNA pseudouridylate synthase CKQ55_RS00505 PF00293 NUDIX domain CKQ55_RS00515 PF04356 Protein of unknown function (DUF489) CKQ55_RS00520 PF08328 Adenylosuccinate lyase C-terminal CKQ55_RS00520 PF00206 Lyase CKQ55_RS00525 PF07690 Major Facilitator Superfamily CKQ55_RS00530 PF01638 HxlR-like helix-turn-helix CKQ55_RS00535 PF00072 Response regulator receiver domain CKQ55_RS00535 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS00540 PF08918 PhoQ Sensor CKQ55_RS00545 PF08007 Cupin superfamily protein CKQ55_RS00550 PF07687 Peptidase dimerisation domain CKQ55_RS00550 PF01546 Peptidase family M20/M25/M40 CKQ55_RS00560 PF08402 TOBE domain CKQ55_RS00560 PF00005 ABC transporter CKQ55_RS00565 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS00570 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS00575 PF13416 Bacterial extracellular solute-binding protein CKQ55_RS00585 PF02780 Transketolase, C-terminal domain CKQ55_RS00585 PF00456 Transketolase, thiamine diphosphate binding domain CKQ55_RS00585 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS00590 PF00923 Transaldolase/Fructose-6-phosphate aldolase CKQ55_RS00595 PF02502 Ribose/Galactose Isomerase CKQ55_RS00605 PF03812 2-keto-3-deoxygluconate permease CKQ55_RS00610 PF07005 Sugar-binding N-terminal domain CKQ55_RS00610 PF17042 Nucleotide-binding C-terminal domain CKQ55_RS00615 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CKQ55_RS00620 PF00121 Triosephosphate isomerase CKQ55_RS00625 PF04198 Putative sugar-binding domain CKQ55_RS00630 PF02146 Sir2 family CKQ55_RS00635 PF00480 ROK family CKQ55_RS00640 PF12704 MacB-like periplasmic core domain CKQ55_RS00640 PF02687 FtsX-like permease family CKQ55_RS00645 PF00005 ABC transporter CKQ55_RS00650 PF02687 FtsX-like permease family CKQ55_RS00650 PF12704 MacB-like periplasmic core domain CKQ55_RS00655 PF02559 CarD-like/TRCF domain CKQ55_RS00655 PF00270 DEAD/DEAH box helicase CKQ55_RS00655 PF00271 Helicase conserved C-terminal domain CKQ55_RS00655 PF03461 TRCF domain CKQ55_RS00655 PF17757 UvrB interaction domain CKQ55_RS00660 PF03734 L,D-transpeptidase catalytic domain CKQ55_RS00660 PF17969 L,D-transpeptidase C-terminal domain CKQ55_RS00660 PF01476 LysM domain CKQ55_RS00665 PF07338 Protein of unknown function (DUF1471) CKQ55_RS00670 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS00675 PF00593 TonB dependent receptor CKQ55_RS00675 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS00680 PF05433 Glycine zipper 2TM domain CKQ55_RS00685 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS00695 PF05728 Uncharacterised protein family (UPF0227) CKQ55_RS00700 PF00933 Glycosyl hydrolase family 3 N terminal domain CKQ55_RS00705 PF01636 Phosphotransferase enzyme family CKQ55_RS00710 PF13036 Peptidoglycan-synthase activator LpoB CKQ55_RS00715 PF07233 Protein of unknown function (DUF1425) CKQ55_RS00720 PF01230 HIT domain CKQ55_RS00730 PF00593 TonB dependent receptor CKQ55_RS00730 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS00735 PF02378 Phosphotransferase system, EIIC CKQ55_RS00735 PF00367 phosphotransferase system, EIIB CKQ55_RS00740 PF01026 TatD related DNase CKQ55_RS00745 PF09115 DNA polymerase III, delta subunit, C terminal CKQ55_RS00750 PF02223 Thymidylate kinase CKQ55_RS00755 PF02618 YceG-like family CKQ55_RS00760 PF01063 Amino-transferase class IV CKQ55_RS00765 PF00109 Beta-ketoacyl synthase, N-terminal domain CKQ55_RS00765 PF02801 Beta-ketoacyl synthase, C-terminal domain CKQ55_RS00770 PF00550 Phosphopantetheine attachment site CKQ55_RS00780 PF00698 Acyl transferase domain CKQ55_RS00785 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CKQ55_RS00785 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CKQ55_RS00790 PF02504 Fatty acid synthesis protein CKQ55_RS00795 PF01783 Ribosomal L32p protein family CKQ55_RS00800 PF02620 Large ribosomal RNA subunit accumulation protein YceD CKQ55_RS00805 PF02545 Maf-like protein CKQ55_RS00810 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CKQ55_RS00810 PF00326 Prolyl oligopeptidase family CKQ55_RS00815 PF01479 S4 domain CKQ55_RS00815 PF00849 RNA pseudouridylate synthase CKQ55_RS00825 PF10150 Ribonuclease E/G family CKQ55_RS00825 PF12111 Polyribonucleotide phosphorylase C terminal CKQ55_RS00825 PF00575 S1 RNA binding domain CKQ55_RS00830 PF03466 LysR substrate binding domain CKQ55_RS00830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS00835 PF07690 Major Facilitator Superfamily CKQ55_RS00840 PF03023 Lipid II flippase MurJ CKQ55_RS00845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS00850 PF04337 Protein of unknown function, DUF480 CKQ55_RS00855 PF13302 Acetyltransferase (GNAT) domain CKQ55_RS00860 PF07690 Major Facilitator Superfamily CKQ55_RS00865 PF04399 Glutaredoxin 2, C terminal domain CKQ55_RS00865 PF13417 Glutathione S-transferase, N-terminal domain CKQ55_RS00870 PF07273 Protein of unknown function (DUF1439) CKQ55_RS00875 PF01979 Amidohydrolase family CKQ55_RS00880 PF06183 DinI-like family CKQ55_RS00885 PF13991 BssS protein family CKQ55_RS00890 PF01266 FAD dependent oxidoreductase CKQ55_RS00895 PF10968 Protein of unknown function (DUF2770) CKQ55_RS00900 PF12368 Rhodanase C-terminal CKQ55_RS00900 PF00581 Rhodanese-like domain CKQ55_RS00900 PF17773 UPF0176 acylphosphatase like domain CKQ55_RS00905 PF03279 Bacterial lipid A biosynthesis acyltransferase CKQ55_RS00915 PF07690 Major Facilitator Superfamily CKQ55_RS00920 PF13984 MsyB protein CKQ55_RS00925 PF07119 Protein of unknown function (DUF1375) CKQ55_RS00930 PF00535 Glycosyl transferase family 2 CKQ55_RS00935 PF04349 Periplasmic glucan biosynthesis protein, MdoG CKQ55_RS00940 PF01757 Acyltransferase family CKQ55_RS00945 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS00945 PF13977 BetI-type transcriptional repressor, C-terminal CKQ55_RS00950 PF01661 Macro domain CKQ55_RS00960 PF06496 Protein of unknown function (DUF1097) CKQ55_RS00965 PF02613 Nitrate reductase delta subunit CKQ55_RS00970 PF02811 PHP domain CKQ55_RS00975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS00985 PF03466 LysR substrate binding domain CKQ55_RS00985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS00990 PF02678 Pirin CKQ55_RS00990 PF05726 Pirin C-terminal cupin domain CKQ55_RS00995 PF00857 Isochorismatase family CKQ55_RS01015 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS01015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS01015 PF00672 HAMP domain CKQ55_RS01035 PF02562 PhoH-like protein CKQ55_RS01040 PF04261 Dyp-type peroxidase family CKQ55_RS01045 PF09375 Imelysin CKQ55_RS01045 PF13473 Cupredoxin-like domain CKQ55_RS01050 PF03239 Iron permease FTR1 family CKQ55_RS01055 PF07662 Na+ dependent nucleoside transporter C-terminus CKQ55_RS01055 PF07670 Nucleoside recognition CKQ55_RS01055 PF01773 Na+ dependent nucleoside transporter N-terminus CKQ55_RS01065 PF00474 Sodium:solute symporter family CKQ55_RS01075 PF01619 Proline dehydrogenase CKQ55_RS01075 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CKQ55_RS01075 PF14850 DNA-binding domain of Proline dehydrogenase CKQ55_RS01075 PF00171 Aldehyde dehydrogenase family CKQ55_RS01085 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS01085 PF08362 YcdC-like protein, C-terminal region CKQ55_RS01090 PF00296 Luciferase-like monooxygenase CKQ55_RS01095 PF00857 Isochorismatase family CKQ55_RS01100 PF01042 Endoribonuclease L-PSP CKQ55_RS01105 PF00561 alpha/beta hydrolase fold CKQ55_RS01110 PF00881 Nitroreductase family CKQ55_RS01115 PF01613 Flavin reductase like domain CKQ55_RS01120 PF00860 Permease family CKQ55_RS01125 PF10685 Stress-induced bacterial acidophilic repeat motif CKQ55_RS01130 PF03358 NADPH-dependent FMN reductase CKQ55_RS01135 PF13993 YccJ-like protein CKQ55_RS01140 PF00328 Histidine phosphatase superfamily (branch 2) CKQ55_RS01155 PF00324 Amino acid permease CKQ55_RS01165 PF00120 Glutamine synthetase, catalytic domain CKQ55_RS01170 PF07722 Peptidase C26 CKQ55_RS01175 PF01381 Helix-turn-helix CKQ55_RS01175 PF07883 Cupin domain CKQ55_RS01180 PF00171 Aldehyde dehydrogenase family CKQ55_RS01185 PF01266 FAD dependent oxidoreductase CKQ55_RS01190 PF03466 LysR substrate binding domain CKQ55_RS01190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS01195 PF00180 Isocitrate/isopropylmalate dehydrogenase CKQ55_RS01200 PF02896 PEP-utilising enzyme, TIM barrel domain CKQ55_RS01200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS01200 PF00381 PTS HPr component phosphorylation site CKQ55_RS01200 PF05524 PEP-utilising enzyme, N-terminal CKQ55_RS01200 PF00391 PEP-utilising enzyme, mobile domain CKQ55_RS01210 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS01215 PF02901 Pyruvate formate lyase-like CKQ55_RS01215 PF01228 Glycine radical CKQ55_RS01220 PF04055 Radical SAM superfamily CKQ55_RS01225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS01235 PF12833 Helix-turn-helix domain CKQ55_RS01240 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS01240 PF05230 MASE2 domain CKQ55_RS01255 PF01817 Chorismate mutase type II CKQ55_RS01255 PF02153 Prephenate dehydrogenase CKQ55_RS01265 PF06178 Oligogalacturonate-specific porin protein (KdgM) CKQ55_RS01270 PF06917 Periplasmic pectate lyase CKQ55_RS01275 PF01546 Peptidase family M20/M25/M40 CKQ55_RS01275 PF07687 Peptidase dimerisation domain CKQ55_RS01280 PF00266 Aminotransferase class-V CKQ55_RS01285 PF00005 ABC transporter CKQ55_RS01290 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS01295 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS01320 PF01425 Amidase CKQ55_RS01335 PF01177 Asp/Glu/Hydantoin racemase CKQ55_RS01345 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CKQ55_RS01350 PF01979 Amidohydrolase family CKQ55_RS01355 PF00576 HIUase/Transthyretin family CKQ55_RS01365 PF00860 Permease family CKQ55_RS01370 PF01494 FAD binding domain CKQ55_RS01375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS01375 PF03466 LysR substrate binding domain CKQ55_RS01380 PF00355 Rieske [2Fe-2S] domain CKQ55_RS01385 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS01390 PF00005 ABC transporter CKQ55_RS01395 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS01410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS01410 PF03466 LysR substrate binding domain CKQ55_RS01430 PF02683 Cytochrome C biogenesis protein transmembrane region CKQ55_RS01430 PF11412 Disulphide bond corrector protein DsbC CKQ55_RS01440 PF13098 Thioredoxin-like domain CKQ55_RS01450 PF00296 Luciferase-like monooxygenase CKQ55_RS01455 PF01042 Endoribonuclease L-PSP CKQ55_RS01465 PF00672 HAMP domain CKQ55_RS01465 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS01470 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS01470 PF00072 Response regulator receiver domain CKQ55_RS01480 PF00873 AcrB/AcrD/AcrF family CKQ55_RS01490 PF00313 'Cold-shock' DNA-binding domain CKQ55_RS01495 PF00313 'Cold-shock' DNA-binding domain CKQ55_RS01500 PF00939 Sodium:sulfate symporter transmembrane region CKQ55_RS01505 PF00330 Aconitase family (aconitate hydratase) CKQ55_RS01505 PF06434 Aconitate hydratase 2 N-terminus CKQ55_RS01505 PF11791 Aconitate B N-terminal domain CKQ55_RS01515 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CKQ55_RS01525 PF04223 Citrate lyase, alpha subunit (CitF) CKQ55_RS01530 PF03328 HpcH/HpaI aldolase/citrate lyase family CKQ55_RS01535 PF06857 Malonate decarboxylase delta subunit (MdcD) CKQ55_RS01540 PF08218 Citrate lyase ligase C-terminal domain CKQ55_RS01545 PF01557 Fumarylacetoacetate (FAA) hydrolase family CKQ55_RS01550 PF07690 Major Facilitator Superfamily CKQ55_RS01555 PF04303 PrpF protein CKQ55_RS01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS01560 PF03466 LysR substrate binding domain CKQ55_RS01575 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS01580 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS01585 PF00005 ABC transporter CKQ55_RS01590 PF01063 Amino-transferase class IV CKQ55_RS01595 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS01610 PF07690 Major Facilitator Superfamily CKQ55_RS01615 PF00155 Aminotransferase class I and II CKQ55_RS01625 PF00873 AcrB/AcrD/AcrF family CKQ55_RS01640 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS01640 PF00107 Zinc-binding dehydrogenase CKQ55_RS01655 PF12833 Helix-turn-helix domain CKQ55_RS01655 PF12852 Cupin CKQ55_RS01660 PF02056 Family 4 glycosyl hydrolase CKQ55_RS01660 PF11975 Family 4 glycosyl hydrolase C-terminal domain CKQ55_RS01665 PF12833 Helix-turn-helix domain CKQ55_RS01675 PF07690 Major Facilitator Superfamily CKQ55_RS01690 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS01695 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS01700 PF00005 ABC transporter CKQ55_RS01705 PF07687 Peptidase dimerisation domain CKQ55_RS01705 PF01546 Peptidase family M20/M25/M40 CKQ55_RS01710 PF13378 Enolase C-terminal domain-like CKQ55_RS01710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS01715 PF01321 Creatinase/Prolidase N-terminal domain CKQ55_RS01715 PF00557 Metallopeptidase family M24 CKQ55_RS01720 PF00701 Dihydrodipicolinate synthetase family CKQ55_RS01725 PF06418 CTP synthase N-terminus CKQ55_RS01725 PF00117 Glutamine amidotransferase class-I CKQ55_RS01730 PF00155 Aminotransferase class I and II CKQ55_RS01735 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS01735 PF07702 UTRA domain CKQ55_RS01745 PF03609 PTS system sorbose-specific iic component CKQ55_RS01750 PF03613 PTS system mannose/fructose/sorbose family IID component CKQ55_RS01755 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS01760 PF13580 SIS domain CKQ55_RS01765 PF07470 Glycosyl Hydrolase Family 88 CKQ55_RS01770 PF13580 SIS domain CKQ55_RS01775 PF03573 outer membrane porin, OprD family CKQ55_RS01790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS01795 PF01027 Inhibitor of apoptosis-promoting Bax1 CKQ55_RS01800 PF04358 DsrC like protein CKQ55_RS01805 PF00708 Acylphosphatase CKQ55_RS01810 PF12833 Helix-turn-helix domain CKQ55_RS01815 PF01161 Phosphatidylethanolamine-binding protein CKQ55_RS01820 PF10672 S-adenosylmethionine-dependent methyltransferase CKQ55_RS01820 PF17785 PUA-like domain CKQ55_RS01825 PF08755 Hemimethylated DNA-binding protein YccV like CKQ55_RS01840 PF00534 Glycosyl transferases group 1 CKQ55_RS01840 PF13439 Glycosyltransferase Family 4 CKQ55_RS01845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS01845 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS01850 PF03412 Peptidase C39 family CKQ55_RS01850 PF00005 ABC transporter CKQ55_RS01850 PF00664 ABC transporter transmembrane region CKQ55_RS01865 PF13380 CoA binding domain CKQ55_RS01870 PF02142 MGS-like domain CKQ55_RS01875 PF12462 DNA helicase IV / RNA helicase N terminal CKQ55_RS01875 PF00580 UvrD/REP helicase N-terminal domain CKQ55_RS01875 PF13361 UvrD-like helicase C-terminal domain CKQ55_RS01880 PF03733 Inner membrane component domain CKQ55_RS01885 PF12805 FUSC-like inner membrane protein yccS CKQ55_RS01890 PF04994 TfoX C-terminal domain CKQ55_RS01890 PF04993 TfoX N-terminal domain CKQ55_RS01895 PF03846 Cell division inhibitor SulA CKQ55_RS01905 PF01389 OmpA-like transmembrane domain CKQ55_RS01905 PF00691 OmpA family CKQ55_RS01910 PF17414 MatP C-terminal ribbon-helix-helix domain CKQ55_RS01910 PF06303 MatP N-terminal domain CKQ55_RS01915 PF13654 AAA domain CKQ55_RS01915 PF05362 Lon protease (S16) C-terminal proteolytic domain CKQ55_RS01920 PF07977 FabA-like domain CKQ55_RS01925 PF04957 Ribosome modulation factor CKQ55_RS01935 PF03886 ABC-type transport auxiliary lipoprotein component CKQ55_RS01940 PF02470 MlaD protein CKQ55_RS01945 PF04403 Paraquat-inducible protein A CKQ55_RS01950 PF00005 ABC transporter CKQ55_RS01950 PF16326 ABC transporter C-terminal domain CKQ55_RS01950 PF12848 ABC transporter CKQ55_RS01955 PF01170 Putative RNA methylase family UPF0020 CKQ55_RS01955 PF10672 S-adenosylmethionine-dependent methyltransferase CKQ55_RS01955 PF02926 THUMP domain CKQ55_RS01960 PF03476 MOSC N-terminal beta barrel domain CKQ55_RS01960 PF03473 MOSC domain CKQ55_RS01960 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS01965 PF07126 Cell-division protein ZapC CKQ55_RS01970 PF01180 Dihydroorotate dehydrogenase CKQ55_RS01975 PF03358 NADPH-dependent FMN reductase CKQ55_RS01980 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS01985 PF00005 ABC transporter CKQ55_RS01990 PF11940 Domain of unknown function (DUF3458) Ig-like fold CKQ55_RS01990 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CKQ55_RS01990 PF01433 Peptidase family M1 domain CKQ55_RS01995 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CKQ55_RS01995 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CKQ55_RS02000 PF01336 OB-fold nucleic acid binding domain CKQ55_RS02000 PF00152 tRNA synthetases class II (D, K and N) CKQ55_RS02005 PF00267 Gram-negative porin CKQ55_RS02010 PF00155 Aminotransferase class I and II CKQ55_RS02015 PF01797 Transposase IS200 like CKQ55_RS02020 PF00753 Metallo-beta-lactamase superfamily CKQ55_RS02025 PF05951 Bacterial protein of unknown function (DUF882) CKQ55_RS02035 PF01471 Putative peptidoglycan binding domain CKQ55_RS02035 PF03734 L,D-transpeptidase catalytic domain CKQ55_RS02040 PF04310 MukB N-terminal CKQ55_RS02040 PF16330 MukB hinge domain CKQ55_RS02045 PF04288 MukE-like family CKQ55_RS02050 PF17193 MukF C-terminal domain CKQ55_RS02050 PF03882 MukF winged-helix domain CKQ55_RS02050 PF17192 MukF middle domain CKQ55_RS02055 PF13847 Methyltransferase domain CKQ55_RS02060 PF02698 DUF218 domain CKQ55_RS02065 PF01636 Phosphotransferase enzyme family CKQ55_RS02070 PF02348 Cytidylyltransferase CKQ55_RS02075 PF03966 Trm112p-like protein CKQ55_RS02080 PF06224 Winged helix DNA-binding domain CKQ55_RS02085 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CKQ55_RS02090 PF00664 ABC transporter transmembrane region CKQ55_RS02090 PF00005 ABC transporter CKQ55_RS02095 PF00753 Metallo-beta-lactamase superfamily CKQ55_RS02095 PF03772 Competence protein CKQ55_RS02100 PF00216 Bacterial DNA-binding protein CKQ55_RS02105 PF00575 S1 RNA binding domain CKQ55_RS02110 PF02224 Cytidylate kinase CKQ55_RS02115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CKQ55_RS02120 PF00266 Aminotransferase class-V CKQ55_RS02125 PF04239 Protein of unknown function (DUF421) CKQ55_RS02130 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CKQ55_RS02130 PF18381 YcaO cyclodehydratase C-terminal domain CKQ55_RS02135 PF01226 Formate/nitrite transporter CKQ55_RS02140 PF02901 Pyruvate formate lyase-like CKQ55_RS02140 PF01228 Glycine radical CKQ55_RS02145 PF04055 Radical SAM superfamily CKQ55_RS02155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS02165 PF00456 Transketolase, thiamine diphosphate binding domain CKQ55_RS02170 PF02780 Transketolase, C-terminal domain CKQ55_RS02170 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS02175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS02180 PF07690 Major Facilitator Superfamily CKQ55_RS02185 PF04976 DMSO reductase anchor subunit (DmsC) CKQ55_RS02190 PF12800 4Fe-4S binding domain CKQ55_RS02190 PF13247 4Fe-4S dicluster domain CKQ55_RS02195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CKQ55_RS02195 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS02195 PF00384 Molybdopterin oxidoreductase CKQ55_RS02200 PF02403 Seryl-tRNA synthetase N-terminal domain CKQ55_RS02200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CKQ55_RS02205 PF12002 MgsA AAA+ ATPase C terminal CKQ55_RS02205 PF16193 AAA C-terminal domain CKQ55_RS02205 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS02210 PF03548 Outer membrane lipoprotein carrier protein LolA CKQ55_RS02215 PF17854 FtsK alpha domain CKQ55_RS02215 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CKQ55_RS02215 PF01580 FtsK/SpoIIIE family CKQ55_RS02215 PF09397 Ftsk gamma domain CKQ55_RS02220 PF01037 Lrp/AsnC ligand binding domain CKQ55_RS02230 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS02235 PF00664 ABC transporter transmembrane region CKQ55_RS02235 PF00005 ABC transporter CKQ55_RS02240 PF00005 ABC transporter CKQ55_RS02240 PF00664 ABC transporter transmembrane region CKQ55_RS02245 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CKQ55_RS02255 PF01176 Translation initiation factor 1A / IF-1 CKQ55_RS02260 PF17871 AAA lid domain CKQ55_RS02260 PF02861 Clp amino terminal domain, pathogenicity island component CKQ55_RS02260 PF07724 AAA domain (Cdc48 subfamily) CKQ55_RS02260 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS02260 PF10431 C-terminal, D2-small domain, of ClpB protein CKQ55_RS02265 PF02617 ATP-dependent Clp protease adaptor protein ClpS CKQ55_RS02270 PF00313 'Cold-shock' DNA-binding domain CKQ55_RS02275 PF12704 MacB-like periplasmic core domain CKQ55_RS02275 PF02687 FtsX-like permease family CKQ55_RS02275 PF00005 ABC transporter CKQ55_RS02280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS02285 PF11398 Protein of unknown function (DUF2813) CKQ55_RS02290 PF00230 Major intrinsic protein CKQ55_RS02295 PF03956 Lysine exporter LysO CKQ55_RS02300 PF03063 Prismane/CO dehydrogenase family CKQ55_RS02305 PF00175 Oxidoreductase NAD-binding domain CKQ55_RS02305 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS02305 PF00970 Oxidoreductase FAD-binding domain CKQ55_RS02315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CKQ55_RS02315 PF00205 Thiamine pyrophosphate enzyme, central domain CKQ55_RS02315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS02320 PF01212 Beta-eliminating lyase CKQ55_RS02325 PF13460 NAD(P)H-binding CKQ55_RS02325 PF11066 Protein of unknown function (DUF2867) CKQ55_RS02330 PF01370 NAD dependent epimerase/dehydratase family CKQ55_RS02335 PF01510 N-acetylmuramoyl-L-alanine amidase CKQ55_RS02340 PF01906 Putative heavy-metal-binding CKQ55_RS02345 PF12883 Protein of unknown function (DUF3828) CKQ55_RS02350 PF00005 ABC transporter CKQ55_RS02355 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS02360 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS02365 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS02370 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS02375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS02375 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS02375 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB CKQ55_RS02375 PF00672 HAMP domain CKQ55_RS02375 PF08448 PAS fold CKQ55_RS02380 PF00072 Response regulator receiver domain CKQ55_RS02380 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS02385 PF05958 tRNA (Uracil-5-)-methyltransferase CKQ55_RS02390 PF10767 Protein of unknown function (DUF2593) CKQ55_RS02395 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS02400 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS02405 PF08402 TOBE domain CKQ55_RS02405 PF00005 ABC transporter CKQ55_RS02410 PF13416 Bacterial extracellular solute-binding protein CKQ55_RS02415 PF10722 Putative bacterial sensory transduction regulator CKQ55_RS02420 PF18030 RimK PreATP-grasp domain CKQ55_RS02420 PF08443 RimK-like ATP-grasp domain CKQ55_RS02425 PF00881 Nitroreductase family CKQ55_RS02430 PF07214 Protein of unknown function (DUF1418) CKQ55_RS02435 PF00462 Glutaredoxin CKQ55_RS02440 PF11045 Putative inner membrane protein of Enterobacteriaceae CKQ55_RS02445 PF02080 TrkA-C domain CKQ55_RS02445 PF06826 Predicted Permease Membrane Region CKQ55_RS02450 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS02455 PF07690 Major Facilitator Superfamily CKQ55_RS02465 PF07690 Major Facilitator Superfamily CKQ55_RS02470 PF01569 PAP2 superfamily CKQ55_RS02475 PF00455 DeoR C terminal sensor domain CKQ55_RS02475 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS02480 PF07943 Penicillin-binding protein 5, C-terminal domain CKQ55_RS02480 PF00768 D-alanyl-D-alanine carboxypeptidase CKQ55_RS02490 PF13610 DDE domain CKQ55_RS02495 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS02495 PF00239 Resolvase, N terminal domain CKQ55_RS02515 PF13610 DDE domain CKQ55_RS02525 PF13700 Domain of unknown function (DUF4158) CKQ55_RS02525 PF01526 Tn3 transposase DDE domain CKQ55_RS02535 PF00302 Chloramphenicol acetyltransferase CKQ55_RS02555 PF09278 MerR, DNA binding CKQ55_RS02555 PF00376 MerR family regulatory protein CKQ55_RS02560 PF02411 MerT mercuric transport protein CKQ55_RS02565 PF00403 Heavy-metal-associated domain CKQ55_RS02570 PF03203 MerC mercury resistance protein CKQ55_RS02575 PF00403 Heavy-metal-associated domain CKQ55_RS02575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CKQ55_RS02575 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS02580 PF13411 MerR HTH family regulatory protein CKQ55_RS02585 PF05052 MerE protein CKQ55_RS02590 PF13188 PAS domain CKQ55_RS02590 PF03707 Bacterial signalling protein N terminal repeat CKQ55_RS02590 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS02590 PF00563 EAL domain CKQ55_RS02605 PF13610 DDE domain CKQ55_RS02615 PF01636 Phosphotransferase enzyme family CKQ55_RS02635 PF13610 DDE domain CKQ55_RS02645 PF03551 Transcriptional regulator PadR-like family CKQ55_RS02665 PF00809 Pterin binding enzyme CKQ55_RS02670 PF00893 Small Multidrug Resistance protein CKQ55_RS02675 PF13427 Domain of unknown function (DUF4111) CKQ55_RS02675 PF01909 Nucleotidyltransferase domain CKQ55_RS02680 PF00186 Dihydrofolate reductase CKQ55_RS02685 PF13495 Phage integrase, N-terminal SAM-like domain CKQ55_RS02685 PF00589 Phage integrase family CKQ55_RS02695 PF13610 DDE domain CKQ55_RS02860 PF00145 C-5 cytosine-specific DNA methylase CKQ55_RS02865 PF05869 DNA N-6-adenine-methyltransferase (Dam) CKQ55_RS02920 PF01381 Helix-turn-helix CKQ55_RS02950 PF00589 Phage integrase family CKQ55_RS02950 PF12167 Arm DNA-binding domain CKQ55_RS02955 PF13417 Glutathione S-transferase, N-terminal domain CKQ55_RS02955 PF00043 Glutathione S-transferase, C-terminal domain CKQ55_RS02960 PF07995 Glucose / Sorbosone dehydrogenase CKQ55_RS02965 PF10799 Biofilm formation protein (YliH/bssR) CKQ55_RS02970 PF01306 LacY proton/sugar symporter CKQ55_RS02980 PF04055 Radical SAM superfamily CKQ55_RS02980 PF18693 TRAM domain CKQ55_RS02980 PF00919 Uncharacterized protein family UPF0004 CKQ55_RS02985 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS02985 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS02990 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS02995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS03000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS03000 PF00005 ABC transporter CKQ55_RS03005 PF01112 Asparaginase CKQ55_RS03010 PF00994 Probable molybdopterin binding domain CKQ55_RS03010 PF03454 MoeA C-terminal region (domain IV) CKQ55_RS03010 PF03453 MoeA N-terminal region (domain I and II) CKQ55_RS03015 PF00899 ThiF family CKQ55_RS03020 PF04055 Radical SAM superfamily CKQ55_RS03025 PF01228 Glycine radical CKQ55_RS03025 PF02901 Pyruvate formate lyase-like CKQ55_RS03035 PF07350 Protein of unknown function (DUF1479) CKQ55_RS03040 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS03045 PF07690 Major Facilitator Superfamily CKQ55_RS03050 PF17137 Domain of unknown function (DUF5110) CKQ55_RS03050 PF01055 Glycosyl hydrolases family 31 CKQ55_RS03050 PF13802 Galactose mutarotase-like CKQ55_RS03050 PF16338 Domain of unknown function (DUF4968) CKQ55_RS03055 PF12848 ABC transporter CKQ55_RS03055 PF00005 ABC transporter CKQ55_RS03065 PF03734 L,D-transpeptidase catalytic domain CKQ55_RS03065 PF17969 L,D-transpeptidase C-terminal domain CKQ55_RS03070 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS03070 PF07702 UTRA domain CKQ55_RS03075 PF00232 Glycosyl hydrolase family 1 CKQ55_RS03080 PF00248 Aldo/keto reductase family CKQ55_RS03085 PF03600 Citrate transporter CKQ55_RS03090 PF02742 Iron dependent repressor, metal binding and dimerisation domain CKQ55_RS03090 PF01325 Iron dependent repressor, N-terminal DNA binding domain CKQ55_RS03100 PF00884 Sulfatase CKQ55_RS03105 PF13505 Outer membrane protein beta-barrel domain CKQ55_RS03110 PF00892 EamA-like transporter family CKQ55_RS03115 PF00210 Ferritin-like domain CKQ55_RS03120 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS03125 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS03130 PF00005 ABC transporter CKQ55_RS03135 PF03797 Autotransporter beta-domain CKQ55_RS03140 PF00924 Mechanosensitive ion channel CKQ55_RS03145 PF05971 RNA methyltransferase CKQ55_RS03155 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS03155 PF00593 TonB dependent receptor CKQ55_RS03160 PF18331 PKHD-type hydroxylase C-terminal domain CKQ55_RS03160 PF13640 2OG-Fe(II) oxygenase superfamily CKQ55_RS03165 PF01258 Prokaryotic dksA/traR C4-type zinc finger CKQ55_RS03170 PF07338 Protein of unknown function (DUF1471) CKQ55_RS03175 PF02885 Glycosyl transferase family, helical bundle domain CKQ55_RS03180 PF06733 DEAD_2 CKQ55_RS03180 PF13307 Helicase C-terminal domain CKQ55_RS03185 PF00270 DEAD/DEAH box helicase CKQ55_RS03185 PF00271 Helicase conserved C-terminal domain CKQ55_RS03190 PF02780 Transketolase, C-terminal domain CKQ55_RS03190 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS03195 PF00456 Transketolase, thiamine diphosphate binding domain CKQ55_RS03205 PF07690 Major Facilitator Superfamily CKQ55_RS03215 PF03466 LysR substrate binding domain CKQ55_RS03215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS03220 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS03220 PF09209 Tetracyclin repressor-like, C-terminal domain CKQ55_RS03225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS03230 PF00005 ABC transporter CKQ55_RS03245 PF11076 Putative inner membrane protein YbhQ CKQ55_RS03250 PF03372 Endonuclease/Exonuclease/phosphatase family CKQ55_RS03255 PF13091 PLD-like domain CKQ55_RS03260 PF03706 Lysylphosphatidylglycerol synthase TM region CKQ55_RS03265 PF01027 Inhibitor of apoptosis-promoting Bax1 CKQ55_RS03270 PF02391 MoaE protein CKQ55_RS03275 PF02597 ThiS family CKQ55_RS03280 PF01967 MoaC family CKQ55_RS03285 PF00994 Probable molybdopterin binding domain CKQ55_RS03290 PF06463 Molybdenum Cofactor Synthesis C CKQ55_RS03290 PF04055 Radical SAM superfamily CKQ55_RS03295 PF01933 Uncharacterised protein family UPF0052 CKQ55_RS03300 PF00884 Sulfatase CKQ55_RS03300 PF08019 Phosphoethanolamine transferase EptA/EptB CKQ55_RS03305 PF00072 Response regulator receiver domain CKQ55_RS03305 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS03310 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS03320 PF02151 UvrB/uvrC motif CKQ55_RS03320 PF04851 Type III restriction enzyme, res subunit CKQ55_RS03320 PF00271 Helicase conserved C-terminal domain CKQ55_RS03320 PF17757 UvrB interaction domain CKQ55_RS03320 PF12344 Ultra-violet resistance protein B CKQ55_RS03330 PF00005 ABC transporter CKQ55_RS03340 PF08241 Methyltransferase domain CKQ55_RS03345 PF00155 Aminotransferase class I and II CKQ55_RS03350 PF06968 Biotin and Thiamin Synthesis associated domain CKQ55_RS03350 PF04055 Radical SAM superfamily CKQ55_RS03355 PF00202 Aminotransferase class-III CKQ55_RS03360 PF01161 Phosphatidylethanolamine-binding protein CKQ55_RS03365 PF00324 Amino acid permease CKQ55_RS03370 PF00221 Aromatic amino acid lyase CKQ55_RS03375 PF01175 Urocanase Rossmann-like domain CKQ55_RS03375 PF17392 Urocanase C-terminal domain CKQ55_RS03375 PF17391 Urocanase N-terminal domain CKQ55_RS03380 PF07702 UTRA domain CKQ55_RS03380 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS03385 PF01979 Amidohydrolase family CKQ55_RS03390 PF01095 Pectinesterase CKQ55_RS03405 PF13411 MerR HTH family regulatory protein CKQ55_RS03410 PF04940 Sensors of blue-light using FAD CKQ55_RS03410 PF00563 EAL domain CKQ55_RS03415 PF10798 Biofilm development protein YmgB/AriR CKQ55_RS03425 PF10798 Biofilm development protein YmgB/AriR CKQ55_RS03430 PF00155 Aminotransferase class I and II CKQ55_RS03430 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS03435 PF13673 Acetyltransferase (GNAT) domain CKQ55_RS03440 PF10282 Lactonase, 7-bladed beta-propeller CKQ55_RS03450 PF03459 TOBE domain CKQ55_RS03450 PF00005 ABC transporter CKQ55_RS03455 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS03465 PF10766 Multidrug efflux pump-associated protein AcrZ CKQ55_RS03470 PF03459 TOBE domain CKQ55_RS03470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS03480 PF00005 ABC transporter CKQ55_RS03485 PF16363 GDP-mannose 4,6 dehydratase CKQ55_RS03490 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CKQ55_RS03490 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CKQ55_RS03495 PF10509 Galactokinase galactose-binding signature CKQ55_RS03495 PF08544 GHMP kinases C terminal CKQ55_RS03495 PF00288 GHMP kinases N terminal domain CKQ55_RS03500 PF01263 Aldose 1-epimerase CKQ55_RS03505 PF00300 Histidine phosphatase superfamily (branch 1) CKQ55_RS03510 PF00793 DAHP synthetase I family CKQ55_RS03515 PF13985 YbgS-like protein CKQ55_RS03520 PF01545 Cation efflux family CKQ55_RS03525 PF04973 Nicotinamide mononucleotide transporter CKQ55_RS03530 PF02445 Quinolinate synthetase A protein CKQ55_RS03565 PF16331 TolA binding protein trimerisation CKQ55_RS03565 PF13174 Tetratricopeptide repeat CKQ55_RS03570 PF00691 OmpA family CKQ55_RS03575 PF07676 WD40-like Beta Propeller Repeat CKQ55_RS03575 PF04052 TolB amino-terminal domain CKQ55_RS03580 PF06519 TolA C-terminal CKQ55_RS03585 PF02472 Biopolymer transport protein ExbD/TolR CKQ55_RS03590 PF01618 MotA/TolQ/ExbB proton channel family CKQ55_RS03595 PF03061 Thioesterase superfamily CKQ55_RS03600 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CKQ55_RS03610 PF08173 Membrane bound YbgT-like protein CKQ55_RS03615 PF02322 Cytochrome bd terminal oxidase subunit II CKQ55_RS03620 PF01654 Cytochrome bd terminal oxidase subunit I CKQ55_RS03625 PF02310 B12 binding domain CKQ55_RS03630 PF13941 MutL protein CKQ55_RS03635 PF06368 Methylaspartate mutase E chain (MutE) CKQ55_RS03640 PF05034 Methylaspartate ammonia-lyase N-terminus CKQ55_RS03640 PF07476 Methylaspartate ammonia-lyase C-terminus CKQ55_RS03660 PF00375 Sodium:dicarboxylate symporter family CKQ55_RS03665 PF04960 Glutaminase CKQ55_RS03670 PF05683 Fumarase C-terminus CKQ55_RS03670 PF05681 Fumarate hydratase (Fumerase) CKQ55_RS03675 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CKQ55_RS03705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS03705 PF03466 LysR substrate binding domain CKQ55_RS03710 PF12833 Helix-turn-helix domain CKQ55_RS03710 PF10114 Sensory domain found in PocR CKQ55_RS03715 PF00549 CoA-ligase CKQ55_RS03715 PF02629 CoA binding domain CKQ55_RS03720 PF00549 CoA-ligase CKQ55_RS03720 PF08442 ATP-grasp domain CKQ55_RS03725 PF00364 Biotin-requiring enzyme CKQ55_RS03725 PF02817 e3 binding domain CKQ55_RS03725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CKQ55_RS03730 PF16870 2-oxoglutarate dehydrogenase C-terminal CKQ55_RS03730 PF16078 2-oxoglutarate dehydrogenase N-terminus CKQ55_RS03730 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS03730 PF00676 Dehydrogenase E1 component CKQ55_RS03735 PF13085 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS03740 PF02910 Fumarate reductase flavoprotein C-term CKQ55_RS03740 PF00890 FAD binding domain CKQ55_RS03745 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CKQ55_RS03750 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CKQ55_RS03760 PF00285 Citrate synthase, C-terminal domain CKQ55_RS03765 PF06827 Zinc finger found in FPG and IleRS CKQ55_RS03765 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CKQ55_RS03765 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CKQ55_RS03770 PF01470 Pyroglutamyl peptidase CKQ55_RS03785 PF03746 LamB/YcsF family CKQ55_RS03790 PF02626 Carboxyltransferase domain, subdomain A and B CKQ55_RS03795 PF02682 Carboxyltransferase domain, subdomain C and D CKQ55_RS03800 PF01784 NIF3 (NGG1p interacting factor 3) CKQ55_RS03805 PF00854 POT family CKQ55_RS03810 PF00875 DNA photolyase CKQ55_RS03810 PF03441 FAD binding domain of DNA photolyase CKQ55_RS03815 PF10725 Protein of unknown function (DUF2517) CKQ55_RS03820 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CKQ55_RS03825 PF03814 Potassium-transporting ATPase A subunit CKQ55_RS03835 PF02669 K+-transporting ATPase, c chain CKQ55_RS03840 PF02702 Osmosensitive K+ channel His kinase sensor domain CKQ55_RS03840 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS03840 PF13493 Domain of unknown function (DUF4118) CKQ55_RS03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS03840 PF13492 GAF domain CKQ55_RS03845 PF00072 Response regulator receiver domain CKQ55_RS03845 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS03850 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS03855 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS03860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS03860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS03865 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS03870 PF00005 ABC transporter CKQ55_RS03875 PF13407 Periplasmic binding protein domain CKQ55_RS03880 PF00107 Zinc-binding dehydrogenase CKQ55_RS03880 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS03885 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS03885 PF00455 DeoR C terminal sensor domain CKQ55_RS03895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CKQ55_RS03895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CKQ55_RS03895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CKQ55_RS03895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CKQ55_RS03900 PF17206 SeqA protein N-terminal domain CKQ55_RS03900 PF03925 SeqA protein C-terminal domain CKQ55_RS03905 PF12697 Alpha/beta hydrolase family CKQ55_RS03910 PF01402 Ribbon-helix-helix protein, copG family CKQ55_RS03915 PF00258 Flavodoxin CKQ55_RS03920 PF01475 Ferric uptake regulator family CKQ55_RS03925 PF03466 LysR substrate binding domain CKQ55_RS03925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS03930 PF00890 FAD binding domain CKQ55_RS03930 PF14537 Cytochrome c3 CKQ55_RS03940 PF07690 Major Facilitator Superfamily CKQ55_RS03945 PF13982 YbfN-like lipoprotein CKQ55_RS03950 PF03573 outer membrane porin, OprD family CKQ55_RS03965 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CKQ55_RS03965 PF00749 tRNA synthetases class I (E and Q), catalytic domain CKQ55_RS03970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CKQ55_RS03970 PF00367 phosphotransferase system, EIIB CKQ55_RS03970 PF02378 Phosphotransferase system, EIIC CKQ55_RS03975 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CKQ55_RS03980 PF01979 Amidohydrolase family CKQ55_RS03985 PF00480 ROK family CKQ55_RS03985 PF01047 MarR family CKQ55_RS03990 PF13344 Haloacid dehalogenase-like hydrolase CKQ55_RS03995 PF13537 Glutamine amidotransferase domain CKQ55_RS03995 PF00733 Asparagine synthase CKQ55_RS04035 PF01494 FAD binding domain CKQ55_RS04040 PF04055 Radical SAM superfamily CKQ55_RS04040 PF00919 Uncharacterized protein family UPF0004 CKQ55_RS04040 PF01938 TRAM domain CKQ55_RS04045 PF02562 PhoH-like protein CKQ55_RS04050 PF02130 Uncharacterized protein family UPF0054 CKQ55_RS04055 PF03471 Transporter associated domain CKQ55_RS04055 PF00571 CBS domain CKQ55_RS04060 PF00795 Carbon-nitrogen hydrolase CKQ55_RS04065 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS04070 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS04075 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS04080 PF00005 ABC transporter CKQ55_RS04085 PF17287 POTRA domain CKQ55_RS04085 PF08479 POTRA domain, ShlB-type CKQ55_RS04085 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CKQ55_RS04095 PF07295 Zinc-ribbon containing domain CKQ55_RS04100 PF00133 tRNA synthetases class I (I, L, M and V) CKQ55_RS04100 PF08264 Anticodon-binding domain of tRNA CKQ55_RS04100 PF13603 Leucyl-tRNA synthetase, Domain 2 CKQ55_RS04105 PF04390 Lipopolysaccharide-assembly CKQ55_RS04110 PF06144 DNA polymerase III, delta subunit CKQ55_RS04110 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CKQ55_RS04115 PF01467 Cytidylyltransferase-like CKQ55_RS04120 PF00300 Histidine phosphatase superfamily (branch 1) CKQ55_RS04135 PF02590 Predicted SPOUT methyltransferase CKQ55_RS04140 PF03717 Penicillin-binding Protein dimerisation domain CKQ55_RS04140 PF00905 Penicillin binding protein transpeptidase domain CKQ55_RS04145 PF01098 Cell cycle protein CKQ55_RS04150 PF03330 Lytic transglycolase CKQ55_RS04150 PF05036 Sporulation related domain CKQ55_RS04155 PF07943 Penicillin-binding protein 5, C-terminal domain CKQ55_RS04155 PF00768 D-alanyl-D-alanine carboxypeptidase CKQ55_RS04160 PF04359 Protein of unknown function (DUF493) CKQ55_RS04165 PF03099 Biotin/lipoate A/B protein ligase family CKQ55_RS04170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS04170 PF03466 LysR substrate binding domain CKQ55_RS04175 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CKQ55_RS04175 PF04055 Radical SAM superfamily CKQ55_RS04180 PF02416 mttA/Hcf106 family CKQ55_RS04185 PF00795 Carbon-nitrogen hydrolase CKQ55_RS04190 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CKQ55_RS04195 PF00313 'Cold-shock' DNA-binding domain CKQ55_RS04200 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CKQ55_RS04205 PF03606 C4-dicarboxylate anaerobic carrier CKQ55_RS04210 PF00445 Ribonuclease T2 family CKQ55_RS04215 PF14760 Rnk N-terminus CKQ55_RS04215 PF01272 Transcription elongation factor, GreA/GreB, C-term CKQ55_RS04220 PF00582 Universal stress protein family CKQ55_RS04225 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS04225 PF13192 Thioredoxin domain CKQ55_RS04235 PF00578 AhpC/TSA family CKQ55_RS04235 PF10417 C-terminal domain of 1-Cys peroxiredoxin CKQ55_RS04240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS04240 PF03466 LysR substrate binding domain CKQ55_RS04245 PF01507 Phosphoadenosine phosphosulfate reductase family CKQ55_RS04245 PF11922 Domain of unknown function (DUF3440) CKQ55_RS04250 PF02195 ParB-like nuclease domain CKQ55_RS04255 PF00155 Aminotransferase class I and II CKQ55_RS04265 PF03079 ARD/ARD' family CKQ55_RS04270 PF00384 Molybdopterin oxidoreductase CKQ55_RS04270 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS04280 PF00005 ABC transporter CKQ55_RS04290 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS04300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS04300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CKQ55_RS04305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS04305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS04310 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS04315 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CKQ55_RS04325 PF07969 Amidohydrolase family CKQ55_RS04330 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS04335 PF00459 Inositol monophosphatase family CKQ55_RS04340 PF07690 Major Facilitator Superfamily CKQ55_RS04345 PF00328 Histidine phosphatase superfamily (branch 2) CKQ55_RS04350 PF01008 Initiation factor 2 subunit family CKQ55_RS04355 PF01636 Phosphotransferase enzyme family CKQ55_RS04375 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS04380 PF00005 ABC transporter CKQ55_RS04385 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS04400 PF04328 Selenoprotein, putative CKQ55_RS04405 PF13722 5TM C-terminal transporter carbon starvation CstA CKQ55_RS04405 PF02554 Carbon starvation protein CstA CKQ55_RS04415 PF03061 Thioesterase superfamily CKQ55_RS04425 PF00550 Phosphopantetheine attachment site CKQ55_RS04425 PF00857 Isochorismatase family CKQ55_RS04430 PF00501 AMP-binding enzyme CKQ55_RS04430 PF13193 AMP-binding enzyme C-terminal domain CKQ55_RS04435 PF00425 chorismate binding enzyme CKQ55_RS04440 PF01497 Periplasmic binding protein CKQ55_RS04445 PF00704 Glycosyl hydrolases family 18 CKQ55_RS04450 PF05977 Transmembrane secretion effector CKQ55_RS04455 PF01032 FecCD transport family CKQ55_RS04460 PF01032 FecCD transport family CKQ55_RS04465 PF00005 ABC transporter CKQ55_RS04470 PF00550 Phosphopantetheine attachment site CKQ55_RS04470 PF00975 Thioesterase domain CKQ55_RS04470 PF00501 AMP-binding enzyme CKQ55_RS04470 PF00668 Condensation domain CKQ55_RS04470 PF13193 AMP-binding enzyme C-terminal domain CKQ55_RS04475 PF03621 MbtH-like protein CKQ55_RS04480 PF11806 Domain of unknown function (DUF3327) CKQ55_RS04480 PF00756 Putative esterase CKQ55_RS04490 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS04490 PF00593 TonB dependent receptor CKQ55_RS04495 PF01648 4'-phosphopantetheinyl transferase superfamily CKQ55_RS04495 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CKQ55_RS04500 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS04500 PF02780 Transketolase, C-terminal domain CKQ55_RS04505 PF00456 Transketolase, thiamine diphosphate binding domain CKQ55_RS04510 PF04198 Putative sugar-binding domain CKQ55_RS04510 PF00325 Bacterial regulatory proteins, crp family CKQ55_RS04515 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS04515 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS04525 PF13407 Periplasmic binding protein domain CKQ55_RS04535 PF00005 ABC transporter CKQ55_RS04540 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS04555 PF01848 Hok/gef family CKQ55_RS04560 PF02028 BCCT, betaine/carnitine/choline family transporter CKQ55_RS04570 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS04570 PF13977 BetI-type transcriptional repressor, C-terminal CKQ55_RS04575 PF00171 Aldehyde dehydrogenase family CKQ55_RS04580 PF05199 GMC oxidoreductase CKQ55_RS04580 PF00732 GMC oxidoreductase CKQ55_RS04595 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS04600 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS04600 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS04605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS04605 PF00005 ABC transporter CKQ55_RS04610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS04610 PF00005 ABC transporter CKQ55_RS04615 PF00202 Aminotransferase class-III CKQ55_RS04620 PF00106 short chain dehydrogenase CKQ55_RS04625 PF00005 ABC transporter CKQ55_RS04630 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS04635 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS04645 PF00155 Aminotransferase class I and II CKQ55_RS04645 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS04650 PF01810 LysE type translocator CKQ55_RS04670 PF07687 Peptidase dimerisation domain CKQ55_RS04670 PF01546 Peptidase family M20/M25/M40 CKQ55_RS04675 PF01425 Amidase CKQ55_RS04680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS04680 PF00005 ABC transporter CKQ55_RS04685 PF00005 ABC transporter CKQ55_RS04685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS04690 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS04690 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS04695 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS04700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS04705 PF04107 Glutamate-cysteine ligase family 2(GCS2) CKQ55_RS04710 PF09992 Phosphodiester glycosidase CKQ55_RS04715 PF00873 AcrB/AcrD/AcrF family CKQ55_RS04720 PF13533 Biotin-lipoyl like CKQ55_RS04725 PF00690 Cation transporter/ATPase, N-terminus CKQ55_RS04725 PF00689 Cation transporting ATPase, C-terminus CKQ55_RS04730 PF06643 Protein of unknown function (DUF1158) CKQ55_RS04740 PF00593 TonB dependent receptor CKQ55_RS04740 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS04745 PF12833 Helix-turn-helix domain CKQ55_RS04750 PF12706 Beta-lactamase superfamily domain CKQ55_RS04775 PF04237 YjbR CKQ55_RS04780 PF00881 Nitroreductase family CKQ55_RS04785 PF06750 Bacterial Peptidase A24 N-terminal domain CKQ55_RS04785 PF01478 Type IV leader peptidase family CKQ55_RS04790 PF01203 Type II secretion system (T2SS), protein N CKQ55_RS04800 PF12693 GspL periplasmic domain CKQ55_RS04800 PF05134 Type II secretion system (T2SS), protein L CKQ55_RS04805 PF03934 Type II secretion system (T2SS), protein K CKQ55_RS04810 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS04810 PF11612 Type II secretion system (T2SS), protein J CKQ55_RS04815 PF02501 Type II secretion system (T2SS), protein I CKQ55_RS04815 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS04820 PF12019 Type II transport protein GspH CKQ55_RS04825 PF08334 Type II secretion system (T2SS), protein G CKQ55_RS04825 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS04830 PF00482 Type II secretion system (T2SS), protein F CKQ55_RS04835 PF00437 Type II/IV secretion system protein CKQ55_RS04840 PF00263 Bacterial type II and III secretion system protein CKQ55_RS04840 PF03958 Bacterial type II/III secretion system short domain CKQ55_RS04845 PF11356 Type II secretion system protein C CKQ55_RS04870 PF08244 Glycosyl hydrolases family 32 C terminal CKQ55_RS04870 PF00251 Glycosyl hydrolases family 32 N-terminal domain CKQ55_RS04870 PF00251 Glycosyl hydrolases family 32 N-terminal domain CKQ55_RS04870 PF08244 Glycosyl hydrolases family 32 C terminal CKQ55_RS04875 PF03613 PTS system mannose/fructose/sorbose family IID component CKQ55_RS04880 PF03609 PTS system sorbose-specific iic component CKQ55_RS04885 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS04890 PF03610 PTS system fructose IIA component CKQ55_RS04890 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS04895 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CKQ55_RS04900 PF00158 Sigma-54 interaction domain CKQ55_RS04900 PF00874 PRD domain CKQ55_RS04900 PF03610 PTS system fructose IIA component CKQ55_RS04910 PF07690 Major Facilitator Superfamily CKQ55_RS04915 PF00924 Mechanosensitive ion channel CKQ55_RS04920 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS04925 PF00293 NUDIX domain CKQ55_RS04935 PF16449 Fimbrillin MatB CKQ55_RS04940 PF18649 EcpB C-terminal domain CKQ55_RS04945 PF15976 CS1-pili formation C-terminal CKQ55_RS04945 PF16967 E-set like domain CKQ55_RS04960 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS04965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS04965 PF03466 LysR substrate binding domain CKQ55_RS04990 PF03825 Nucleoside H+ symporter CKQ55_RS04995 PF00324 Amino acid permease CKQ55_RS05000 PF00593 TonB dependent receptor CKQ55_RS05000 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS05005 PF00248 Aldo/keto reductase family CKQ55_RS05010 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS05015 PF01546 Peptidase family M20/M25/M40 CKQ55_RS05015 PF07687 Peptidase dimerisation domain CKQ55_RS05040 PF01032 FecCD transport family CKQ55_RS05045 PF00005 ABC transporter CKQ55_RS05050 PF00294 pfkB family carbohydrate kinase CKQ55_RS05055 PF02264 LamB porin CKQ55_RS05055 PF11471 Maltoporin periplasmic N-terminal extension CKQ55_RS05060 PF00367 phosphotransferase system, EIIB CKQ55_RS05060 PF02378 Phosphotransferase system, EIIC CKQ55_RS05065 PF08244 Glycosyl hydrolases family 32 C terminal CKQ55_RS05065 PF00251 Glycosyl hydrolases family 32 N-terminal domain CKQ55_RS05070 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS05070 PF13407 Periplasmic binding protein domain CKQ55_RS05085 PF03123 CAT RNA binding domain CKQ55_RS05085 PF00874 PRD domain CKQ55_RS05090 PF00232 Glycosyl hydrolase family 1 CKQ55_RS05095 PF00367 phosphotransferase system, EIIB CKQ55_RS05095 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CKQ55_RS05095 PF02378 Phosphotransferase system, EIIC CKQ55_RS05100 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS05105 PF00005 ABC transporter CKQ55_RS05110 PF13407 Periplasmic binding protein domain CKQ55_RS05120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS05120 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS05125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS05125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS05140 PF01336 OB-fold nucleic acid binding domain CKQ55_RS05140 PF00152 tRNA synthetases class II (D, K and N) CKQ55_RS05150 PF00854 POT family CKQ55_RS05155 PF01276 Orn/Lys/Arg decarboxylase, major domain CKQ55_RS05155 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CKQ55_RS05155 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CKQ55_RS05160 PF13520 Amino acid permease CKQ55_RS05170 PF18500 CadC C-terminal domain 1 CKQ55_RS05170 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS05180 PF03466 LysR substrate binding domain CKQ55_RS05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS05190 PF00753 Metallo-beta-lactamase superfamily CKQ55_RS05190 PF16123 Hydroxyacylglutathione hydrolase C-terminus CKQ55_RS05195 PF00295 Glycosyl hydrolases family 28 CKQ55_RS05200 PF04299 Putative FMN-binding domain CKQ55_RS05205 PF00589 Phage integrase family CKQ55_RS05340 PF00589 Phage integrase family CKQ55_RS05340 PF13356 Arm DNA-binding domain CKQ55_RS05340 PF14659 Phage integrase, N-terminal SAM-like domain CKQ55_RS05365 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CKQ55_RS05370 PF07484 Phage Tail Collar Domain CKQ55_RS05370 PF03335 Phage tail fibre repeat CKQ55_RS05370 PF03335 Phage tail fibre repeat CKQ55_RS05370 PF07484 Phage Tail Collar Domain CKQ55_RS05495 PF17288 Terminase RNAseH like domain CKQ55_RS05495 PF04466 Phage terminase large subunit CKQ55_RS05545 PF00149 Calcineurin-like phosphoesterase CKQ55_RS05615 PF00717 Peptidase S24-like CKQ55_RS05615 PF01381 Helix-turn-helix CKQ55_RS05705 PF00589 Phage integrase family CKQ55_RS05715 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CKQ55_RS05715 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CKQ55_RS05725 PF09190 DALR domain CKQ55_RS05725 PF01406 tRNA synthetases class I (C) catalytic domain CKQ55_RS05730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CKQ55_RS05735 PF00149 Calcineurin-like phosphoesterase CKQ55_RS05745 PF00731 AIR carboxylase CKQ55_RS05750 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CKQ55_RS05750 PF02222 ATP-grasp domain CKQ55_RS05760 PF00267 Gram-negative porin CKQ55_RS05765 PF08803 Putative mono-oxygenase ydhR CKQ55_RS05775 PF00005 ABC transporter CKQ55_RS05780 PF13472 GDSL-like Lipase/Acylhydrolase family CKQ55_RS05785 PF00106 short chain dehydrogenase CKQ55_RS05790 PF00085 Thioredoxin CKQ55_RS05795 PF03649 Uncharacterised protein family (UPF0014) CKQ55_RS05800 PF00005 ABC transporter CKQ55_RS05805 PF16200 C-terminal region of band_7 CKQ55_RS05805 PF01145 SPFH domain / Band 7 family CKQ55_RS05810 PF01957 NfeD-like C-terminal, partner-binding CKQ55_RS05825 PF13411 MerR HTH family regulatory protein CKQ55_RS05830 PF00403 Heavy-metal-associated domain CKQ55_RS05840 PF01618 MotA/TolQ/ExbB proton channel family CKQ55_RS05860 PF01963 TraB family CKQ55_RS05865 PF04073 Aminoacyl-tRNA editing domain CKQ55_RS05870 PF00149 Calcineurin-like phosphoesterase CKQ55_RS05870 PF02872 5'-nucleotidase, C-terminal domain CKQ55_RS05875 PF07690 Major Facilitator Superfamily CKQ55_RS05880 PF02254 TrkA-N domain CKQ55_RS05880 PF00999 Sodium/hydrogen exchanger family CKQ55_RS05885 PF00294 pfkB family carbohydrate kinase CKQ55_RS05890 PF00762 Ferrochelatase CKQ55_RS05895 PF05191 Adenylate kinase, active site lid CKQ55_RS05900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS05900 PF00183 Hsp90 protein CKQ55_RS05905 PF13662 Toprim domain CKQ55_RS05905 PF02132 RecR protein CKQ55_RS05910 PF02575 YbaB/EbfC DNA-binding family CKQ55_RS05915 PF12170 DNA polymerase III tau subunit V interacting with alpha CKQ55_RS05915 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CKQ55_RS05915 PF12169 DNA polymerase III subunits gamma and tau domain III CKQ55_RS05920 PF00156 Phosphoribosyl transferase domain CKQ55_RS05925 PF04304 Protein of unknown function (DUF454) CKQ55_RS05930 PF07445 Primosomal replication protein priC CKQ55_RS05935 PF10689 Protein of unknown function (DUF2496) CKQ55_RS05940 PF04754 Putative transposase, YhgA-like CKQ55_RS05945 PF00924 Mechanosensitive ion channel CKQ55_RS05945 PF12794 Mechanosensitive ion channel inner membrane domain 1 CKQ55_RS05945 PF12795 Mechanosensitive ion channel porin domain CKQ55_RS05950 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS05950 PF08361 MAATS-type transcriptional repressor, C-terminal region CKQ55_RS05955 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS05955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS05960 PF00873 AcrB/AcrD/AcrF family CKQ55_RS05965 PF10757 Biofilm formation regulator YbaJ CKQ55_RS05970 PF05321 Haemolysin expression modulating protein CKQ55_RS05975 PF14602 Hexapeptide repeat of succinyl-transferase CKQ55_RS05975 PF12464 Maltose acetyltransferase CKQ55_RS05980 PF10777 Inner membrane protein YlaC CKQ55_RS05985 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS05985 PF00155 Aminotransferase class I and II CKQ55_RS05995 PF00444 Ribosomal protein L36 CKQ55_RS06000 PF01197 Ribosomal protein L31 CKQ55_RS06005 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS06010 PF02264 LamB porin CKQ55_RS06015 PF00367 phosphotransferase system, EIIB CKQ55_RS06015 PF02378 Phosphotransferase system, EIIC CKQ55_RS06020 PF08533 Beta-galactosidase C-terminal domain CKQ55_RS06020 PF08532 Beta-galactosidase trimerisation domain CKQ55_RS06020 PF02449 Beta-galactosidase CKQ55_RS06025 PF07745 Glycosyl hydrolase family 53 CKQ55_RS06030 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06035 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06040 PF13416 Bacterial extracellular solute-binding protein CKQ55_RS06045 PF17912 MalK OB fold domain CKQ55_RS06045 PF00005 ABC transporter CKQ55_RS06050 PF00563 EAL domain CKQ55_RS06050 PF12792 CSS motif domain associated with EAL CKQ55_RS06055 PF02583 Metal-sensitive transcriptional repressor CKQ55_RS06060 PF03824 High-affinity nickel-transport protein CKQ55_RS06065 PF07237 Protein of unknown function (DUF1428) CKQ55_RS06100 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CKQ55_RS06105 PF09619 Type III secretion system lipoprotein chaperone (YscW) CKQ55_RS06115 PF00909 Ammonium Transporter Family CKQ55_RS06120 PF00543 Nitrogen regulatory protein P-II CKQ55_RS06130 PF00005 ABC transporter CKQ55_RS06130 PF00664 ABC transporter transmembrane region CKQ55_RS06135 PF00005 ABC transporter CKQ55_RS06135 PF00664 ABC transporter transmembrane region CKQ55_RS06140 PF13404 AsnC-type helix-turn-helix domain CKQ55_RS06140 PF01037 Lrp/AsnC ligand binding domain CKQ55_RS06155 PF12793 Sugar transport-related sRNA regulator N-term CKQ55_RS06155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS06160 PF06508 Queuosine biosynthesis protein QueC CKQ55_RS06180 PF13145 PPIC-type PPIASE domain CKQ55_RS06185 PF00216 Bacterial DNA-binding protein CKQ55_RS06190 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS06190 PF05362 Lon protease (S16) C-terminal proteolytic domain CKQ55_RS06190 PF02190 ATP-dependent protease La (LON) substrate-binding domain CKQ55_RS06195 PF10431 C-terminal, D2-small domain, of ClpB protein CKQ55_RS06195 PF07724 AAA domain (Cdc48 subfamily) CKQ55_RS06195 PF06689 ClpX C4-type zinc finger CKQ55_RS06200 PF00574 Clp protease CKQ55_RS06205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CKQ55_RS06205 PF05698 Bacterial trigger factor protein (TF) C-terminus CKQ55_RS06205 PF05697 Bacterial trigger factor protein (TF) CKQ55_RS06220 PF01722 BolA-like protein CKQ55_RS06225 PF03923 Uncharacterized lipoprotein CKQ55_RS06225 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CKQ55_RS06230 PF07690 Major Facilitator Superfamily CKQ55_RS06235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CKQ55_RS06235 PF06481 COX Aromatic Rich Motif CKQ55_RS06240 PF00115 Cytochrome C and Quinol oxidase polypeptide I CKQ55_RS06245 PF00510 Cytochrome c oxidase subunit III CKQ55_RS06250 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CKQ55_RS06255 PF01040 UbiA prenyltransferase family CKQ55_RS06265 PF01614 Bacterial transcriptional regulator CKQ55_RS06265 PF09339 IclR helix-turn-helix domain CKQ55_RS06270 PF08501 Shikimate dehydrogenase substrate binding domain CKQ55_RS06270 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CKQ55_RS06270 PF01488 Shikimate / quinate 5-dehydrogenase CKQ55_RS06275 PF00890 FAD binding domain CKQ55_RS06285 PF00890 FAD binding domain CKQ55_RS06295 PF07690 Major Facilitator Superfamily CKQ55_RS06310 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS06310 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS06315 PF07690 Major Facilitator Superfamily CKQ55_RS06320 PF04461 Protein of unknown function (DUF520) CKQ55_RS06325 PF02558 Ketopantoate reductase PanE/ApbA CKQ55_RS06325 PF08546 Ketopantoate reductase PanE/ApbA C terminal CKQ55_RS06330 PF01965 DJ-1/PfpI family CKQ55_RS06335 PF02926 THUMP domain CKQ55_RS06335 PF02568 Thiamine biosynthesis protein (ThiI) CKQ55_RS06340 PF02609 Exonuclease VII small subunit CKQ55_RS06345 PF00348 Polyprenyl synthetase CKQ55_RS06350 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS06350 PF02780 Transketolase, C-terminal domain CKQ55_RS06350 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CKQ55_RS06355 PF00248 Aldo/keto reductase family CKQ55_RS06360 PF04608 Phosphatidylglycerophosphatase A CKQ55_RS06365 PF00586 AIR synthase related protein, N-terminal domain CKQ55_RS06365 PF02769 AIR synthase related protein, C-terminal domain CKQ55_RS06370 PF01029 NusB family CKQ55_RS06375 PF00885 6,7-dimethyl-8-ribityllumazine synthase CKQ55_RS06380 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CKQ55_RS06380 PF01872 RibD C-terminal domain CKQ55_RS06385 PF03477 ATP cone domain CKQ55_RS06390 PF11622 Protein of unknown function (DUF3251) CKQ55_RS06395 PF03502 Nucleoside-specific channel-forming protein, Tsx CKQ55_RS06415 PF01797 Transposase IS200 like CKQ55_RS06420 PF02355 Protein export membrane protein CKQ55_RS06420 PF07549 SecD/SecF GG Motif CKQ55_RS06425 PF13721 SecD export protein N-terminal TM region CKQ55_RS06425 PF02355 Protein export membrane protein CKQ55_RS06425 PF07549 SecD/SecF GG Motif CKQ55_RS06430 PF02699 Preprotein translocase subunit CKQ55_RS06435 PF01702 Queuine tRNA-ribosyltransferase CKQ55_RS06440 PF02547 Queuosine biosynthesis protein CKQ55_RS06445 PF04336 Acyl carrier protein phosphodiesterase CKQ55_RS06450 PF00578 AhpC/TSA family CKQ55_RS06450 PF10417 C-terminal domain of 1-Cys peroxiredoxin CKQ55_RS06465 PF07969 Amidohydrolase family CKQ55_RS06475 PF00857 Isochorismatase family CKQ55_RS06480 PF03466 LysR substrate binding domain CKQ55_RS06480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS06485 PF02903 Alpha amylase, N-terminal ig-like domain CKQ55_RS06485 PF00128 Alpha amylase, catalytic domain CKQ55_RS06490 PF00324 Amino acid permease CKQ55_RS06495 PF05525 Branched-chain amino acid transport protein CKQ55_RS06500 PF00989 PAS fold CKQ55_RS06500 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS06500 PF11808 Phosphate regulon sensor protein PhoR CKQ55_RS06505 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS06505 PF00072 Response regulator receiver domain CKQ55_RS06510 PF12320 Type 5 capsule protein repressor C-terminal domain CKQ55_RS06510 PF00149 Calcineurin-like phosphoesterase CKQ55_RS06515 PF13476 AAA domain CKQ55_RS06525 PF00480 ROK family CKQ55_RS06530 PF04381 Putative exonuclease, RdgC CKQ55_RS06535 PF06865 Pyrimidine/purine nucleoside phosphorylase CKQ55_RS06540 PF07302 AroM protein CKQ55_RS06545 PF16362 YaiA protein CKQ55_RS06550 PF01202 Shikimate kinase CKQ55_RS06555 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) CKQ55_RS06560 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CKQ55_RS06565 PF14748 Pyrroline-5-carboxylate reductase dimerisation CKQ55_RS06565 PF03807 NADP oxidoreductase coenzyme F420-dependent CKQ55_RS06570 PF07769 psiF repeat CKQ55_RS06575 PF00245 Alkaline phosphatase CKQ55_RS06580 PF10796 Sigma-S stabilisation anti-adaptor protein CKQ55_RS06585 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS06595 PF00106 short chain dehydrogenase CKQ55_RS06600 PF07690 Major Facilitator Superfamily CKQ55_RS06610 PF07478 D-ala D-ala ligase C-terminus CKQ55_RS06610 PF01820 D-ala D-ala ligase N-terminus CKQ55_RS06615 PF10953 Protein of unknown function (DUF2754) CKQ55_RS06620 PF10954 Protein of unknown function (DUF2755) CKQ55_RS06625 PF07759 Protein of unknown function (DUF1615) CKQ55_RS06630 PF05992 SbmA/BacA-like family CKQ55_RS06640 PF00144 Beta-lactamase CKQ55_RS06645 PF00490 Delta-aminolevulinic acid dehydratase CKQ55_RS06660 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CKQ55_RS06665 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06670 PF00005 ABC transporter CKQ55_RS06675 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CKQ55_RS06680 PF00072 Response regulator receiver domain CKQ55_RS06680 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS06685 PF07730 Histidine kinase CKQ55_RS06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS06685 PF05231 MASE1 CKQ55_RS06690 PF07690 Major Facilitator Superfamily CKQ55_RS06700 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06705 PF00005 ABC transporter CKQ55_RS06705 PF08402 TOBE domain CKQ55_RS06710 PF02574 Homocysteine S-methyltransferase CKQ55_RS06715 PF00324 Amino acid permease CKQ55_RS06725 PF00324 Amino acid permease CKQ55_RS06730 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CKQ55_RS06735 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CKQ55_RS06740 PF13458 Periplasmic binding protein CKQ55_RS06745 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS06750 PF11862 Domain of unknown function (DUF3382) CKQ55_RS06750 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS06755 PF12399 Branched-chain amino acid ATP-binding cassette transporter CKQ55_RS06755 PF00005 ABC transporter CKQ55_RS06760 PF00005 ABC transporter CKQ55_RS06770 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS06775 PF00005 ABC transporter CKQ55_RS06780 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06785 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06800 PF15976 CS1-pili formation C-terminal CKQ55_RS06800 PF16967 E-set like domain CKQ55_RS06805 PF18649 EcpB C-terminal domain CKQ55_RS06810 PF16449 Fimbrillin MatB CKQ55_RS06815 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS06820 PF00005 ABC transporter CKQ55_RS06830 PF13737 Transposase DDE domain CKQ55_RS06840 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06845 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06865 PF00085 Thioredoxin CKQ55_RS06870 PF00005 ABC transporter CKQ55_RS06875 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS06880 PF09084 NMT1/THI5 like CKQ55_RS06885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS06885 PF03466 LysR substrate binding domain CKQ55_RS06890 PF00877 NlpC/P60 family CKQ55_RS06895 PF00267 Gram-negative porin CKQ55_RS06900 PF01472 PUA domain CKQ55_RS06900 PF00696 Amino acid kinase family CKQ55_RS06905 PF00171 Aldehyde dehydrogenase family CKQ55_RS06915 PF00589 Phage integrase family CKQ55_RS06915 PF14659 Phage integrase, N-terminal SAM-like domain CKQ55_RS06915 PF13356 Arm DNA-binding domain CKQ55_RS06935 PF04606 Ogr/Delta-like zinc finger CKQ55_RS06965 PF17345 Family of unknown function (DUF5375) CKQ55_RS06980 PF16859 Tetracyclin repressor-like, C-terminal domain CKQ55_RS06980 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS06995 PF07690 Major Facilitator Superfamily CKQ55_RS07005 PF01979 Amidohydrolase family CKQ55_RS07010 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CKQ55_RS07015 PF17391 Urocanase N-terminal domain CKQ55_RS07015 PF01175 Urocanase Rossmann-like domain CKQ55_RS07015 PF17392 Urocanase C-terminal domain CKQ55_RS07020 PF00005 ABC transporter CKQ55_RS07020 PF00571 CBS domain CKQ55_RS07025 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS07030 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS07040 PF00221 Aromatic amino acid lyase CKQ55_RS07045 PF05962 HutD CKQ55_RS07050 PF07702 UTRA domain CKQ55_RS07050 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS07055 PF01979 Amidohydrolase family CKQ55_RS07060 PF03605 Anaerobic c4-dicarboxylate membrane transporter CKQ55_RS07065 PF01557 Fumarylacetoacetate (FAA) hydrolase family CKQ55_RS07070 PF00701 Dihydrodipicolinate synthetase family CKQ55_RS07075 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS07080 PF07690 Major Facilitator Superfamily CKQ55_RS07085 PF04966 Carbohydrate-selective porin, OprB family CKQ55_RS07090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS07090 PF03466 LysR substrate binding domain CKQ55_RS07135 PF13847 Methyltransferase domain CKQ55_RS07140 PF00583 Acetyltransferase (GNAT) family CKQ55_RS07145 PF09857 Putative toxin of bacterial toxin-antitoxin pair CKQ55_RS07150 PF03786 D-mannonate dehydratase (UxuA) CKQ55_RS07155 PF08125 Mannitol dehydrogenase C-terminal domain CKQ55_RS07155 PF01232 Mannitol dehydrogenase Rossmann domain CKQ55_RS07160 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS07160 PF07729 FCD domain CKQ55_RS07170 PF00593 TonB dependent receptor CKQ55_RS07170 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS07180 PF00171 Aldehyde dehydrogenase family CKQ55_RS07190 PF13737 Transposase DDE domain CKQ55_RS07195 PF02397 Bacterial sugar transferase CKQ55_RS07205 PF02563 Polysaccharide biosynthesis/export protein CKQ55_RS07225 PF00535 Glycosyl transferase family 2 CKQ55_RS07230 PF13439 Glycosyltransferase Family 4 CKQ55_RS07230 PF00534 Glycosyl transferases group 1 CKQ55_RS07235 PF00534 Glycosyl transferases group 1 CKQ55_RS07235 PF13439 Glycosyltransferase Family 4 CKQ55_RS07250 PF06426 Serine acetyltransferase, N-terminal CKQ55_RS07250 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS07255 PF07417 Sigma factor-binding transcriptional regulator Crl CKQ55_RS07260 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CKQ55_RS07265 PF00156 Phosphoribosyl transferase domain CKQ55_RS07270 PF07687 Peptidase dimerisation domain CKQ55_RS07270 PF01546 Peptidase family M20/M25/M40 CKQ55_RS07275 PF13673 Acetyltransferase (GNAT) domain CKQ55_RS07280 PF11799 impB/mucB/samB family C-terminal domain CKQ55_RS07280 PF00817 impB/mucB/samB family CKQ55_RS07280 PF11798 IMS family HHH motif CKQ55_RS07285 PF03009 Glycerophosphoryl diester phosphodiesterase family CKQ55_RS07290 PF04400 (Na+)-NQR maturation NqrM CKQ55_RS07295 PF00175 Oxidoreductase NAD-binding domain CKQ55_RS07295 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS07295 PF00970 Oxidoreductase FAD-binding domain CKQ55_RS07300 PF02508 Rnf-Nqr subunit, membrane protein CKQ55_RS07305 PF02508 Rnf-Nqr subunit, membrane protein CKQ55_RS07310 PF04205 FMN-binding domain CKQ55_RS07315 PF03116 NQR2, RnfD, RnfE family CKQ55_RS07320 PF11973 NQRA C-terminal domain CKQ55_RS07320 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CKQ55_RS07325 PF03734 L,D-transpeptidase catalytic domain CKQ55_RS07330 PF13230 Glutamine amidotransferases class-II CKQ55_RS07340 PF13580 SIS domain CKQ55_RS07345 PF09317 Domain of unknown function (DUF1974) CKQ55_RS07345 PF02770 Acyl-CoA dehydrogenase, middle domain CKQ55_RS07345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CKQ55_RS07345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CKQ55_RS07350 PF00795 Carbon-nitrogen hydrolase CKQ55_RS07360 PF00929 Exonuclease CKQ55_RS07365 PF00075 RNase H CKQ55_RS07370 PF08241 Methyltransferase domain CKQ55_RS07375 PF00753 Metallo-beta-lactamase superfamily CKQ55_RS07375 PF16123 Hydroxyacylglutathione hydrolase C-terminus CKQ55_RS07380 PF01464 Transglycosylase SLT domain CKQ55_RS07380 PF01476 LysM domain CKQ55_RS07385 PF08241 Methyltransferase domain CKQ55_RS07390 PF03372 Endonuclease/Exonuclease/phosphatase family CKQ55_RS07395 PF07690 Major Facilitator Superfamily CKQ55_RS07400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS07400 PF03466 LysR substrate binding domain CKQ55_RS07405 PF00248 Aldo/keto reductase family CKQ55_RS07450 PF09383 NIL domain CKQ55_RS07450 PF00005 ABC transporter CKQ55_RS07455 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS07460 PF03180 NLPA lipoprotein CKQ55_RS07465 PF16358 RcsF lipoprotein CKQ55_RS07470 PF18389 TrmO C-terminal domain CKQ55_RS07470 PF01980 tRNA-methyltransferase O CKQ55_RS07475 PF04073 Aminoacyl-tRNA editing domain CKQ55_RS07475 PF03129 Anticodon binding domain CKQ55_RS07475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CKQ55_RS07480 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CKQ55_RS07485 PF04170 NlpE N-terminal domain CKQ55_RS07485 PF17185 NlpE C-terminal OB domain CKQ55_RS07490 PF00472 RF-1 domain CKQ55_RS07495 PF07152 YaeQ protein CKQ55_RS07500 PF06786 Uncharacterised protein family (UPF0253) CKQ55_RS07505 PF07073 Modulator of Rho-dependent transcription termination (ROF) CKQ55_RS07510 PF01171 PP-loop family CKQ55_RS07510 PF09179 TilS substrate binding domain CKQ55_RS07510 PF11734 TilS substrate C-terminal domain CKQ55_RS07515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CKQ55_RS07520 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CKQ55_RS07520 PF01276 Orn/Lys/Arg decarboxylase, major domain CKQ55_RS07520 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CKQ55_RS07530 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CKQ55_RS07535 PF01336 OB-fold nucleic acid binding domain CKQ55_RS07535 PF07733 Bacterial DNA polymerase III alpha NTPase domain CKQ55_RS07535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CKQ55_RS07535 PF02811 PHP domain CKQ55_RS07535 PF14579 Helix-hairpin-helix motif CKQ55_RS07540 PF01351 Ribonuclease HII CKQ55_RS07545 PF02684 Lipid-A-disaccharide synthetase CKQ55_RS07550 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CKQ55_RS07550 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS07555 PF07977 FabA-like domain CKQ55_RS07560 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CKQ55_RS07560 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS07565 PF03938 Outer membrane protein (OmpH-like) CKQ55_RS07570 PF01103 Surface antigen CKQ55_RS07570 PF07244 Surface antigen variable number repeat CKQ55_RS07575 PF17820 PDZ domain CKQ55_RS07575 PF02163 Peptidase family M50 CKQ55_RS07585 PF01255 Putative undecaprenyl diphosphate synthase CKQ55_RS07595 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CKQ55_RS07595 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CKQ55_RS07595 PF13288 DXP reductoisomerase C-terminal domain CKQ55_RS07600 PF01765 Ribosome recycling factor CKQ55_RS07605 PF00696 Amino acid kinase family CKQ55_RS07610 PF00889 Elongation factor TS CKQ55_RS07615 PF00318 Ribosomal protein S2 CKQ55_RS07620 PF00557 Metallopeptidase family M24 CKQ55_RS07630 PF01842 ACT domain CKQ55_RS07630 PF08335 GlnD PII-uridylyltransferase CKQ55_RS07630 PF01966 HD domain CKQ55_RS07630 PF01909 Nucleotidyltransferase domain CKQ55_RS07635 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS07635 PF14602 Hexapeptide repeat of succinyl-transferase CKQ55_RS07635 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CKQ55_RS07640 PF11944 Protein of unknown function (DUF3461) CKQ55_RS07650 PF13556 PucR C-terminal helix-turn-helix domain CKQ55_RS07650 PF17853 GGDEF-like domain CKQ55_RS07650 PF05651 Putative sugar diacid recognition CKQ55_RS07655 PF00595 PDZ domain CKQ55_RS07660 PF01966 HD domain CKQ55_RS07660 PF13286 Phosphohydrolase-associated domain CKQ55_RS07665 PF01048 Phosphorylase superfamily CKQ55_RS07670 PF01497 Periplasmic binding protein CKQ55_RS07675 PF03458 UPF0126 domain CKQ55_RS07680 PF01521 Iron-sulphur cluster biosynthesis CKQ55_RS07685 PF00654 Voltage gated chloride channel CKQ55_RS07690 PF00202 Aminotransferase class-III CKQ55_RS07695 PF04754 Putative transposase, YhgA-like CKQ55_RS07700 PF01032 FecCD transport family CKQ55_RS07705 PF01497 Periplasmic binding protein CKQ55_RS07710 PF00005 ABC transporter CKQ55_RS07720 PF00912 Transglycosylase CKQ55_RS07720 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CKQ55_RS07720 PF00905 Penicillin binding protein transpeptidase domain CKQ55_RS07720 PF14814 Bifunctional transglycosylase second domain CKQ55_RS07730 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CKQ55_RS07735 PF16537 Type II secretion system protein B CKQ55_RS07740 PF17967 Pullulanase N2 domain CKQ55_RS07740 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CKQ55_RS07740 PF18494 Pullulanase Ins domain CKQ55_RS07740 PF03714 Bacterial pullanase-associated domain CKQ55_RS07740 PF11852 Domain of unknown function (DUF3372) CKQ55_RS07745 PF11356 Type II secretion system protein C CKQ55_RS07750 PF03958 Bacterial type II/III secretion system short domain CKQ55_RS07750 PF00263 Bacterial type II and III secretion system protein CKQ55_RS07755 PF00437 Type II/IV secretion system protein CKQ55_RS07760 PF00482 Type II secretion system (T2SS), protein F CKQ55_RS07765 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS07765 PF08334 Type II secretion system (T2SS), protein G CKQ55_RS07770 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS07775 PF02501 Type II secretion system (T2SS), protein I CKQ55_RS07775 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS07780 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS07780 PF11612 Type II secretion system (T2SS), protein J CKQ55_RS07785 PF03934 Type II secretion system (T2SS), protein K CKQ55_RS07790 PF05134 Type II secretion system (T2SS), protein L CKQ55_RS07790 PF12693 GspL periplasmic domain CKQ55_RS07795 PF04612 Type II secretion system (T2SS), protein M CKQ55_RS07800 PF01203 Type II secretion system (T2SS), protein N CKQ55_RS07805 PF06750 Bacterial Peptidase A24 N-terminal domain CKQ55_RS07805 PF01478 Type IV leader peptidase family CKQ55_RS07810 PF00270 DEAD/DEAH box helicase CKQ55_RS07810 PF08482 ATP-dependent helicase C-terminal CKQ55_RS07810 PF00271 Helicase conserved C-terminal domain CKQ55_RS07810 PF04408 Helicase associated domain (HA2) CKQ55_RS07815 PF02834 LigT like Phosphoesterase CKQ55_RS07820 PF17746 SfsA N-terminal OB domain CKQ55_RS07820 PF03749 Sugar fermentation stimulation protein RE domain CKQ55_RS07825 PF01258 Prokaryotic dksA/traR C4-type zinc finger CKQ55_RS07830 PF00749 tRNA synthetases class I (E and Q), catalytic domain CKQ55_RS07835 PF12626 Polymerase A arginine-rich C-terminus CKQ55_RS07835 PF01743 Poly A polymerase head domain CKQ55_RS07835 PF12627 Probable RNA and SrmB- binding site of polymerase A CKQ55_RS07840 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CKQ55_RS07845 PF02548 Ketopantoate hydroxymethyltransferase CKQ55_RS07850 PF02569 Pantoate-beta-alanine ligase CKQ55_RS07855 PF02261 Aspartate decarboxylase CKQ55_RS07865 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS07865 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS07870 PF13953 PapC C-terminal domain CKQ55_RS07870 PF13954 PapC N-terminal domain CKQ55_RS07870 PF00577 Outer membrane usher protein CKQ55_RS07895 PF01522 Polysaccharide deacetylase CKQ55_RS07900 PF03610 PTS system fructose IIA component CKQ55_RS07905 PF01061 ABC-2 type transporter CKQ55_RS07910 PF00005 ABC transporter CKQ55_RS07915 PF00484 Carbonic anhydrase CKQ55_RS07920 PF00156 Phosphoribosyl transferase domain CKQ55_RS07925 PF01011 PQQ enzyme repeat CKQ55_RS07930 PF07732 Multicopper oxidase CKQ55_RS07930 PF07731 Multicopper oxidase CKQ55_RS07930 PF00394 Multicopper oxidase CKQ55_RS07935 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CKQ55_RS07945 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CKQ55_RS07945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CKQ55_RS07950 PF17284 Spermidine synthase tetramerisation domain CKQ55_RS07955 PF02675 S-adenosylmethionine decarboxylase CKQ55_RS07960 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS07960 PF00455 DeoR C terminal sensor domain CKQ55_RS07965 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CKQ55_RS07970 PF17042 Nucleotide-binding C-terminal domain CKQ55_RS07970 PF07005 Sugar-binding N-terminal domain CKQ55_RS07975 PF03812 2-keto-3-deoxygluconate permease CKQ55_RS07980 PF06062 Uncharacterised protein family (UPF0231) CKQ55_RS07985 PF11791 Aconitate B N-terminal domain CKQ55_RS07985 PF00330 Aconitase family (aconitate hydratase) CKQ55_RS07985 PF06434 Aconitate hydratase 2 N-terminus CKQ55_RS07990 PF11737 Protein of unknown function (DUF3300) CKQ55_RS08005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CKQ55_RS08005 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS08010 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CKQ55_RS08010 PF00364 Biotin-requiring enzyme CKQ55_RS08010 PF02817 e3 binding domain CKQ55_RS08015 PF00456 Transketolase, thiamine diphosphate binding domain CKQ55_RS08015 PF17831 Pyruvate dehydrogenase E1 component middle domain CKQ55_RS08020 PF07729 FCD domain CKQ55_RS08020 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS08025 PF00324 Amino acid permease CKQ55_RS08035 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain CKQ55_RS08035 PF04616 Glycosyl hydrolases family 43 CKQ55_RS08040 PF17113 Regulatory signalling modulator protein AmpE CKQ55_RS08045 PF01510 N-acetylmuramoyl-L-alanine amidase CKQ55_RS08050 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CKQ55_RS08050 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CKQ55_RS08055 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS08060 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CKQ55_RS08060 PF00437 Type II/IV secretion system protein CKQ55_RS08065 PF00482 Type II secretion system (T2SS), protein F CKQ55_RS08070 PF00478 IMP dehydrogenase / GMP reductase domain CKQ55_RS08075 PF01121 Dephospho-CoA kinase CKQ55_RS08080 PF07072 Cell division protein CKQ55_RS08085 PF03884 DNA gyrase inhibitor YacG CKQ55_RS08090 PF00293 NUDIX domain CKQ55_RS08095 PF07516 SecA Wing and Scaffold domain CKQ55_RS08095 PF02810 SEC-C motif CKQ55_RS08095 PF01043 SecA preprotein cross-linking domain CKQ55_RS08095 PF07517 SecA DEAD-like domain CKQ55_RS08100 PF06558 Secretion monitor precursor protein (SecM) CKQ55_RS08105 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CKQ55_RS08110 PF12327 FtsZ family, C-terminal domain CKQ55_RS08110 PF00091 Tubulin/FtsZ family, GTPase domain CKQ55_RS08115 PF02491 SHS2 domain inserted in FTSA CKQ55_RS08120 PF03799 Cell division protein FtsQ CKQ55_RS08120 PF08478 POTRA domain, FtsQ-type CKQ55_RS08125 PF07478 D-ala D-ala ligase C-terminus CKQ55_RS08125 PF01820 D-ala D-ala ligase N-terminus CKQ55_RS08130 PF08245 Mur ligase middle domain CKQ55_RS08130 PF01225 Mur ligase family, catalytic domain CKQ55_RS08130 PF02875 Mur ligase family, glutamate ligase domain CKQ55_RS08135 PF03033 Glycosyltransferase family 28 N-terminal domain CKQ55_RS08135 PF04101 Glycosyltransferase family 28 C-terminal domain CKQ55_RS08140 PF01098 Cell cycle protein CKQ55_RS08145 PF08245 Mur ligase middle domain CKQ55_RS08145 PF02875 Mur ligase family, glutamate ligase domain CKQ55_RS08150 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CKQ55_RS08150 PF00953 Glycosyl transferase family 4 CKQ55_RS08155 PF01225 Mur ligase family, catalytic domain CKQ55_RS08155 PF02875 Mur ligase family, glutamate ligase domain CKQ55_RS08155 PF08245 Mur ligase middle domain CKQ55_RS08160 PF08245 Mur ligase middle domain CKQ55_RS08160 PF02875 Mur ligase family, glutamate ligase domain CKQ55_RS08160 PF01225 Mur ligase family, catalytic domain CKQ55_RS08165 PF00905 Penicillin binding protein transpeptidase domain CKQ55_RS08165 PF03717 Penicillin-binding Protein dimerisation domain CKQ55_RS08170 PF04999 Cell division protein FtsL CKQ55_RS08175 PF01795 MraW methylase family CKQ55_RS08180 PF02381 MraZ protein, putative antitoxin-like CKQ55_RS08190 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CKQ55_RS08190 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS08195 PF10369 Small subunit of acetolactate synthase CKQ55_RS08200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS08200 PF00205 Thiamine pyrophosphate enzyme, central domain CKQ55_RS08200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CKQ55_RS08205 PF03466 LysR substrate binding domain CKQ55_RS08205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS08215 PF00682 HMGL-like CKQ55_RS08215 PF08502 LeuA allosteric (dimerisation) domain CKQ55_RS08220 PF00180 Isocitrate/isopropylmalate dehydrogenase CKQ55_RS08225 PF00330 Aconitase family (aconitate hydratase) CKQ55_RS08230 PF00694 Aconitase C-terminal domain CKQ55_RS08235 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS08235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CKQ55_RS08240 PF08501 Shikimate dehydrogenase substrate binding domain CKQ55_RS08240 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CKQ55_RS08245 PF07690 Major Facilitator Superfamily CKQ55_RS08250 PF01487 Type I 3-dehydroquinase CKQ55_RS08255 PF03466 LysR substrate binding domain CKQ55_RS08255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS08260 PF07690 Major Facilitator Superfamily CKQ55_RS08265 PF07690 Major Facilitator Superfamily CKQ55_RS08275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS08275 PF12793 Sugar transport-related sRNA regulator N-term CKQ55_RS08285 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS08290 PF00005 ABC transporter CKQ55_RS08295 PF09335 SNARE associated Golgi protein CKQ55_RS08300 PF02311 AraC-like ligand binding domain CKQ55_RS08300 PF12833 Helix-turn-helix domain CKQ55_RS08305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS08310 PF11762 L-arabinose isomerase C-terminal domain CKQ55_RS08310 PF02610 L-arabinose isomerase CKQ55_RS08315 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS08320 PF00136 DNA polymerase family B CKQ55_RS08320 PF03104 DNA polymerase family B, exonuclease domain CKQ55_RS08325 PF12137 RNA polymerase recycling family C-terminal CKQ55_RS08325 PF00271 Helicase conserved C-terminal domain CKQ55_RS08325 PF18337 RapA N-terminal Tudor like domain CKQ55_RS08325 PF18339 RapA N-terminal Tudor like domain 1 CKQ55_RS08325 PF00176 SNF2 family N-terminal domain CKQ55_RS08330 PF00849 RNA pseudouridylate synthase CKQ55_RS08335 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CKQ55_RS08340 PF03390 2-hydroxycarboxylate transporter family CKQ55_RS08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS08345 PF17203 Single cache domain 3 CKQ55_RS08350 PF12431 Transcriptional regulator CKQ55_RS08350 PF00072 Response regulator receiver domain CKQ55_RS08355 PF05099 Tellurite resistance protein TerB CKQ55_RS08355 PF00226 DnaJ domain CKQ55_RS08360 PF04453 LPS transport system D CKQ55_RS08360 PF03968 OstA-like protein CKQ55_RS08365 PF00639 PPIC-type PPIASE domain CKQ55_RS08365 PF09312 SurA N-terminal domain CKQ55_RS08370 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CKQ55_RS08375 PF00398 Ribosomal RNA adenine dimethylase CKQ55_RS08380 PF04379 ApaG domain CKQ55_RS08385 PF00149 Calcineurin-like phosphoesterase CKQ55_RS08390 PF00186 Dihydrofolate reductase CKQ55_RS08400 PF02254 TrkA-N domain CKQ55_RS08400 PF00999 Sodium/hydrogen exchanger family CKQ55_RS08405 PF02525 Flavodoxin-like fold CKQ55_RS08410 PF06004 Bacterial protein of unknown function (DUF903) CKQ55_RS08420 PF02142 MGS-like domain CKQ55_RS08420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CKQ55_RS08420 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CKQ55_RS08425 PF00117 Glutamine amidotransferase class-I CKQ55_RS08425 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CKQ55_RS08430 PF05173 Dihydrodipicolinate reductase, C-terminus CKQ55_RS08430 PF01113 Dihydrodipicolinate reductase, N-terminus CKQ55_RS08435 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CKQ55_RS08440 PF04223 Citrate lyase, alpha subunit (CitF) CKQ55_RS08445 PF03328 HpcH/HpaI aldolase/citrate lyase family CKQ55_RS08450 PF06857 Malonate decarboxylase delta subunit (MdcD) CKQ55_RS08455 PF00583 Acetyltransferase (GNAT) family CKQ55_RS08455 PF08218 Citrate lyase ligase C-terminal domain CKQ55_RS08460 PF03390 2-hydroxycarboxylate transporter family CKQ55_RS08465 PF04277 Oxaloacetate decarboxylase, gamma chain CKQ55_RS08470 PF00364 Biotin-requiring enzyme CKQ55_RS08470 PF00682 HMGL-like CKQ55_RS08470 PF02436 Conserved carboxylase domain CKQ55_RS08475 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CKQ55_RS08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS08480 PF17203 Single cache domain 3 CKQ55_RS08485 PF00072 Response regulator receiver domain CKQ55_RS08485 PF12431 Transcriptional regulator CKQ55_RS08490 PF02272 DHHA1 domain CKQ55_RS08490 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CKQ55_RS08490 PF01411 tRNA synthetases class II (A) CKQ55_RS08495 PF03466 LysR substrate binding domain CKQ55_RS08495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS08500 PF00330 Aconitase family (aconitate hydratase) CKQ55_RS08500 PF00694 Aconitase C-terminal domain CKQ55_RS08505 PF00939 Sodium:sulfate symporter transmembrane region CKQ55_RS08510 PF00939 Sodium:sulfate symporter transmembrane region CKQ55_RS08515 PF04303 PrpF protein CKQ55_RS08520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS08520 PF03466 LysR substrate binding domain CKQ55_RS08525 PF01156 Inosine-uridine preferring nucleoside hydrolase CKQ55_RS08530 PF02401 LytB protein CKQ55_RS08535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CKQ55_RS08540 PF01252 Signal peptidase (SPase) II CKQ55_RS08545 PF06827 Zinc finger found in FPG and IleRS CKQ55_RS08545 PF08264 Anticodon-binding domain of tRNA CKQ55_RS08545 PF00133 tRNA synthetases class I (I, L, M and V) CKQ55_RS08550 PF06574 FAD synthetase CKQ55_RS08550 PF01687 Riboflavin kinase CKQ55_RS08560 PF01649 Ribosomal protein S20 CKQ55_RS08565 PF03466 LysR substrate binding domain CKQ55_RS08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS08570 PF06965 Na+/H+ antiporter 1 CKQ55_RS08575 PF15977 Winged helix-turn-helix DNA binding CKQ55_RS08585 PF00704 Glycosyl hydrolases family 18 CKQ55_RS08605 PF03466 LysR substrate binding domain CKQ55_RS08605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS08610 PF01556 DnaJ C terminal domain CKQ55_RS08610 PF00684 DnaJ central domain CKQ55_RS08610 PF00226 DnaJ domain CKQ55_RS08615 PF00012 Hsp70 protein CKQ55_RS08620 PF10807 Protein of unknown function (DUF2541) CKQ55_RS08625 PF03981 Ubiquinol-cytochrome C chaperone CKQ55_RS08625 PF13099 Domain of unknown function (DUF3944) CKQ55_RS08630 PF01184 GPR1/FUN34/yaaH family CKQ55_RS08635 PF07690 Major Facilitator Superfamily CKQ55_RS08640 PF00994 Probable molybdopterin binding domain CKQ55_RS08645 PF00923 Transaldolase/Fructose-6-phosphate aldolase CKQ55_RS08650 PF01235 Sodium:alanine symporter family CKQ55_RS08655 PF03883 Peroxide stress protein YaaA CKQ55_RS08660 PF14821 Threonine synthase N terminus CKQ55_RS08660 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS08665 PF00288 GHMP kinases N terminal domain CKQ55_RS08665 PF08544 GHMP kinases C terminal CKQ55_RS08670 PF13840 ACT domain CKQ55_RS08670 PF00696 Amino acid kinase family CKQ55_RS08670 PF01842 ACT domain CKQ55_RS08670 PF00742 Homoserine dehydrogenase CKQ55_RS08670 PF03447 Homoserine dehydrogenase, NAD binding domain CKQ55_RS08675 PF08254 Threonine leader peptide CKQ55_RS08680 PF00588 SpoU rRNA Methylase family CKQ55_RS08690 PF00072 Response regulator receiver domain CKQ55_RS08690 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS08695 PF06123 Inner membrane protein CreD CKQ55_RS08700 PF00672 HAMP domain CKQ55_RS08700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS08700 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS08705 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS08705 PF00072 Response regulator receiver domain CKQ55_RS08710 PF05981 CreA protein CKQ55_RS08715 PF06445 GyrI-like small molecule binding domain CKQ55_RS08715 PF12833 Helix-turn-helix domain CKQ55_RS08720 PF00300 Histidine phosphatase superfamily (branch 1) CKQ55_RS08725 PF01931 Protein of unknown function DUF84 CKQ55_RS08730 PF01371 Trp repressor protein CKQ55_RS08735 PF01464 Transglycosylase SLT domain CKQ55_RS08735 PF14718 Soluble lytic murein transglycosylase L domain CKQ55_RS08740 PF12848 ABC transporter CKQ55_RS08740 PF00005 ABC transporter CKQ55_RS08745 PF13521 AAA domain CKQ55_RS08745 PF01381 Helix-turn-helix CKQ55_RS08750 PF18073 Rubredoxin metal binding domain CKQ55_RS08755 PF18429 Domain of unknown function (DUF5609) CKQ55_RS08765 PF10144 Bacterial virulence factor haemolysin CKQ55_RS08770 PF03099 Biotin/lipoate A/B protein ligase family CKQ55_RS08770 PF10437 Bacterial lipoate protein ligase C-terminus CKQ55_RS08775 PF01048 Phosphorylase superfamily CKQ55_RS08780 PF01676 Metalloenzyme superfamily CKQ55_RS08785 PF00591 Glycosyl transferase family, a/b domain CKQ55_RS08785 PF02885 Glycosyl transferase family, helical bundle domain CKQ55_RS08785 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CKQ55_RS08790 PF01791 DeoC/LacD family aldolase CKQ55_RS08795 PF01773 Na+ dependent nucleoside transporter N-terminus CKQ55_RS08795 PF07662 Na+ dependent nucleoside transporter C-terminus CKQ55_RS08795 PF07670 Nucleoside recognition CKQ55_RS08800 PF01026 TatD related DNase CKQ55_RS08805 PF01734 Patatin-like phospholipase CKQ55_RS08810 PF07043 Protein of unknown function (DUF1328) CKQ55_RS08815 PF04972 BON domain CKQ55_RS08820 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS08820 PF03144 Elongation factor Tu domain 2 CKQ55_RS08820 PF16658 Class II release factor RF3, C-terminal domain CKQ55_RS08825 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS08830 PF00583 Acetyltransferase (GNAT) family CKQ55_RS08835 PF03603 DNA polymerase III psi subunit CKQ55_RS08840 PF08468 Methyltransferase small domain N-terminal CKQ55_RS08840 PF05175 Methyltransferase small domain CKQ55_RS08860 PF07256 Protein of unknown function (DUF1435) CKQ55_RS08865 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS08870 PF11575 FhuF 2Fe-2S C-terminal domain CKQ55_RS08870 PF06276 Ferric iron reductase FhuF-like transporter CKQ55_RS08875 PF02378 Phosphotransferase system, EIIC CKQ55_RS08880 PF04073 Aminoacyl-tRNA editing domain CKQ55_RS08885 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS08890 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS08895 PF02311 AraC-like ligand binding domain CKQ55_RS08895 PF12833 Helix-turn-helix domain CKQ55_RS08900 PF01494 FAD binding domain CKQ55_RS08905 PF06738 Putative threonine/serine exporter CKQ55_RS08910 PF12821 Threonine/Serine exporter, ThrE CKQ55_RS08915 PF17948 DnaT DNA-binding domain CKQ55_RS08920 PF01695 IstB-like ATP binding protein CKQ55_RS08925 PF10696 Protein of unknown function (DUF2501) CKQ55_RS08930 PF00884 Sulfatase CKQ55_RS08935 PF04754 Putative transposase, YhgA-like CKQ55_RS08940 PF01380 SIS domain CKQ55_RS08945 PF01380 SIS domain CKQ55_RS08950 PF03613 PTS system mannose/fructose/sorbose family IID component CKQ55_RS08955 PF03609 PTS system sorbose-specific iic component CKQ55_RS08960 PF03610 PTS system fructose IIA component CKQ55_RS08960 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS08965 PF03610 PTS system fructose IIA component CKQ55_RS08965 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS08970 PF00874 PRD domain CKQ55_RS08970 PF03610 PTS system fructose IIA component CKQ55_RS08970 PF00158 Sigma-54 interaction domain CKQ55_RS08980 PF08125 Mannitol dehydrogenase C-terminal domain CKQ55_RS08980 PF01232 Mannitol dehydrogenase Rossmann domain CKQ55_RS08985 PF00107 Zinc-binding dehydrogenase CKQ55_RS08985 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS08990 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS08990 PF07729 FCD domain CKQ55_RS08995 PF07690 Major Facilitator Superfamily CKQ55_RS09005 PF07690 Major Facilitator Superfamily CKQ55_RS09010 PF00583 Acetyltransferase (GNAT) family CKQ55_RS09015 PF00583 Acetyltransferase (GNAT) family CKQ55_RS09020 PF01380 SIS domain CKQ55_RS09020 PF01418 Helix-turn-helix domain, rpiR family CKQ55_RS09025 PF01081 KDPG and KHG aldolase CKQ55_RS09030 PF05035 2-keto-3-deoxy-galactonokinase CKQ55_RS09035 PF00474 Sodium:solute symporter family CKQ55_RS09045 PF07969 Amidohydrolase family CKQ55_RS09050 PF01168 Alanine racemase, N-terminal domain CKQ55_RS09055 PF01047 MarR family CKQ55_RS09060 PF01557 Fumarylacetoacetate (FAA) hydrolase family CKQ55_RS09065 PF01557 Fumarylacetoacetate (FAA) hydrolase family CKQ55_RS09070 PF00171 Aldehyde dehydrogenase family CKQ55_RS09075 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CKQ55_RS09080 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase CKQ55_RS09085 PF01557 Fumarylacetoacetate (FAA) hydrolase family CKQ55_RS09090 PF03328 HpcH/HpaI aldolase/citrate lyase family CKQ55_RS09095 PF07690 Major Facilitator Superfamily CKQ55_RS09100 PF12833 Helix-turn-helix domain CKQ55_RS09105 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CKQ55_RS09105 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CKQ55_RS09110 PF01613 Flavin reductase like domain CKQ55_RS09115 PF13722 5TM C-terminal transporter carbon starvation CstA CKQ55_RS09115 PF02554 Carbon starvation protein CstA CKQ55_RS09120 PF04328 Selenoprotein, putative CKQ55_RS09125 PF07683 Cobalamin synthesis protein cobW C-terminal domain CKQ55_RS09125 PF02492 CobW/HypB/UreG, nucleotide-binding domain CKQ55_RS09140 PF00171 Aldehyde dehydrogenase family CKQ55_RS09145 PF04754 Putative transposase, YhgA-like CKQ55_RS09155 PF01810 LysE type translocator CKQ55_RS09160 PF04286 Protein of unknown function (DUF445) CKQ55_RS09165 PF07690 Major Facilitator Superfamily CKQ55_RS09170 PF02195 ParB-like nuclease domain CKQ55_RS09175 PF11922 Domain of unknown function (DUF3440) CKQ55_RS09175 PF01507 Phosphoadenosine phosphosulfate reductase family CKQ55_RS09185 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CKQ55_RS09190 PF01869 BadF/BadG/BcrA/BcrD ATPase family CKQ55_RS09195 PF11823 Protein of unknown function (DUF3343) CKQ55_RS09200 PF07687 Peptidase dimerisation domain CKQ55_RS09200 PF01546 Peptidase family M20/M25/M40 CKQ55_RS09205 PF07670 Nucleoside recognition CKQ55_RS09210 PF07670 Nucleoside recognition CKQ55_RS09215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS09215 PF03466 LysR substrate binding domain CKQ55_RS09225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS09225 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS09240 PF06568 Domain of unknown function (DUF1127) CKQ55_RS09245 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS09245 PF00155 Aminotransferase class I and II CKQ55_RS09250 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CKQ55_RS09250 PF00271 Helicase conserved C-terminal domain CKQ55_RS09250 PF08463 EcoEI R protein C-terminal CKQ55_RS09250 PF04851 Type III restriction enzyme, res subunit CKQ55_RS09255 PF02384 N-6 DNA Methylase CKQ55_RS09260 PF01420 Type I restriction modification DNA specificity domain CKQ55_RS09265 PF08845 Toxin SymE, type I toxin-antitoxin system CKQ55_RS09270 PF03069 Acetamidase/Formamidase family CKQ55_RS09275 PF00324 Amino acid permease CKQ55_RS09290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CKQ55_RS09300 PF02525 Flavodoxin-like fold CKQ55_RS09320 PF00936 BMC domain CKQ55_RS09325 PF00936 BMC domain CKQ55_RS09330 PF00936 BMC domain CKQ55_RS09335 PF00171 Aldehyde dehydrogenase family CKQ55_RS09335 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS09345 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS09350 PF01228 Glycine radical CKQ55_RS09350 PF02901 Pyruvate formate lyase-like CKQ55_RS09355 PF13187 4Fe-4S dicluster domain CKQ55_RS09355 PF04055 Radical SAM superfamily CKQ55_RS09360 PF00936 BMC domain CKQ55_RS09365 PF06130 Phosphate propanoyltransferase CKQ55_RS09375 PF00893 Small Multidrug Resistance protein CKQ55_RS09380 PF00893 Small Multidrug Resistance protein CKQ55_RS09390 PF01212 Beta-eliminating lyase CKQ55_RS09395 PF03222 Tryptophan/tyrosine permease family CKQ55_RS09400 PF00579 tRNA synthetases class I (W and Y) CKQ55_RS09405 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS09410 PF13533 Biotin-lipoyl like CKQ55_RS09415 PF00005 ABC transporter CKQ55_RS09455 PF08007 Cupin superfamily protein CKQ55_RS09460 PF01975 Survival protein SurE CKQ55_RS09475 PF00083 Sugar (and other) transporter CKQ55_RS09475 PF07690 Major Facilitator Superfamily CKQ55_RS09490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS09490 PF13378 Enolase C-terminal domain-like CKQ55_RS09500 PF00701 Dihydrodipicolinate synthetase family CKQ55_RS09510 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS09510 PF13407 Periplasmic binding protein domain CKQ55_RS09520 PF01223 DNA/RNA non-specific endonuclease CKQ55_RS09525 PF08845 Toxin SymE, type I toxin-antitoxin system CKQ55_RS09550 PF06755 CbtA_toxin of type IV toxin-antitoxin system CKQ55_RS09555 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CKQ55_RS09560 PF06174 Protein of unknown function (DUF987) CKQ55_RS09565 PF04002 RadC-like JAB domain CKQ55_RS09570 PF03230 Antirestriction protein CKQ55_RS09575 PF06006 Bacterial protein of unknown function (DUF905) CKQ55_RS09580 PF06067 Domain of unknown function (DUF932) CKQ55_RS09590 PF13148 Protein of unknown function (DUF3987) CKQ55_RS09600 PF05930 Prophage CP4-57 regulatory protein (AlpA) CKQ55_RS09610 PF13006 Insertion element 4 transposase N-terminal CKQ55_RS09610 PF01609 Transposase DDE domain CKQ55_RS09615 PF01381 Helix-turn-helix CKQ55_RS09620 PF13007 Transposase C of IS166 homeodomain CKQ55_RS09620 PF13005 zinc-finger binding domain of transposase IS66 CKQ55_RS09620 PF13817 IS66 C-terminal element CKQ55_RS09620 PF03050 Transposase IS66 family CKQ55_RS09645 PF00419 Fimbrial protein CKQ55_RS09650 PF13953 PapC C-terminal domain CKQ55_RS09650 PF00577 Outer membrane usher protein CKQ55_RS09650 PF13954 PapC N-terminal domain CKQ55_RS09655 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS09655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS09660 PF16970 Type-1 fimbrial protein, A CKQ55_RS09665 PF13737 Transposase DDE domain CKQ55_RS09675 PF03050 Transposase IS66 family CKQ55_RS09675 PF13005 zinc-finger binding domain of transposase IS66 CKQ55_RS09675 PF13817 IS66 C-terminal element CKQ55_RS09675 PF13007 Transposase C of IS166 homeodomain CKQ55_RS09695 PF08125 Mannitol dehydrogenase C-terminal domain CKQ55_RS09695 PF01232 Mannitol dehydrogenase Rossmann domain CKQ55_RS09710 PF13007 Transposase C of IS166 homeodomain CKQ55_RS09710 PF13817 IS66 C-terminal element CKQ55_RS09710 PF13005 zinc-finger binding domain of transposase IS66 CKQ55_RS09710 PF03050 Transposase IS66 family CKQ55_RS09725 PF13007 Transposase C of IS166 homeodomain CKQ55_RS09725 PF13005 zinc-finger binding domain of transposase IS66 CKQ55_RS09725 PF13817 IS66 C-terminal element CKQ55_RS09725 PF03050 Transposase IS66 family CKQ55_RS09735 PF00005 ABC transporter CKQ55_RS09740 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS09745 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS09755 PF03466 LysR substrate binding domain CKQ55_RS09755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS09760 PF00557 Metallopeptidase family M24 CKQ55_RS09760 PF01321 Creatinase/Prolidase N-terminal domain CKQ55_RS09765 PF13610 DDE domain CKQ55_RS09775 PF13737 Transposase DDE domain CKQ55_RS09820 PF13276 HTH-like domain CKQ55_RS09820 PF13333 Integrase core domain CKQ55_RS09820 PF00665 Integrase core domain CKQ55_RS09825 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CKQ55_RS09855 PF13737 Transposase DDE domain CKQ55_RS09885 PF13356 Arm DNA-binding domain CKQ55_RS09885 PF00589 Phage integrase family CKQ55_RS09905 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS09905 PF00107 Zinc-binding dehydrogenase CKQ55_RS09910 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS09915 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS09920 PF00149 Calcineurin-like phosphoesterase CKQ55_RS09925 PF17912 MalK OB fold domain CKQ55_RS09925 PF00005 ABC transporter CKQ55_RS09930 PF13416 Bacterial extracellular solute-binding protein CKQ55_RS09940 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS09945 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS09950 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS09950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS09955 PF00205 Thiamine pyrophosphate enzyme, central domain CKQ55_RS09955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS09955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CKQ55_RS09960 PF00294 pfkB family carbohydrate kinase CKQ55_RS09965 PF02685 Glucokinase CKQ55_RS09965 PF01418 Helix-turn-helix domain, rpiR family CKQ55_RS09965 PF01380 SIS domain CKQ55_RS09970 PF04962 KduI/IolB family CKQ55_RS09975 PF00171 Aldehyde dehydrogenase family CKQ55_RS09985 PF05872 Bacterial protein of unknown function (DUF853) CKQ55_RS09990 PF03739 Lipopolysaccharide export system permease LptF/LptG CKQ55_RS09995 PF03739 Lipopolysaccharide export system permease LptF/LptG CKQ55_RS10010 PF02789 Cytosol aminopeptidase family, N-terminal domain CKQ55_RS10010 PF00883 Cytosol aminopeptidase family, catalytic domain CKQ55_RS10015 PF04364 DNA polymerase III chi subunit, HolC CKQ55_RS10020 PF08264 Anticodon-binding domain of tRNA CKQ55_RS10020 PF00133 tRNA synthetases class I (I, L, M and V) CKQ55_RS10020 PF10458 Valyl tRNA synthetase tRNA binding arm CKQ55_RS10025 PF00583 Acetyltransferase (GNAT) family CKQ55_RS10030 PF00135 Carboxylesterase family CKQ55_RS10035 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CKQ55_RS10040 PF06877 Regulator of ribonuclease activity B CKQ55_RS10045 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CKQ55_RS10045 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CKQ55_RS10050 PF04074 YhcH/YjgK/YiaL CKQ55_RS10055 PF08052 PyrBI operon leader peptide CKQ55_RS10060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CKQ55_RS10060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CKQ55_RS10065 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CKQ55_RS10065 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CKQ55_RS10070 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CKQ55_RS10070 PF18416 N-acetylglucosamine binding protein domain 2 CKQ55_RS10075 PF01042 Endoribonuclease L-PSP CKQ55_RS10080 PF00689 Cation transporting ATPase, C-terminus CKQ55_RS10080 PF00690 Cation transporter/ATPase, N-terminus CKQ55_RS10090 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS10095 PF00367 phosphotransferase system, EIIB CKQ55_RS10095 PF02378 Phosphotransferase system, EIIC CKQ55_RS10100 PF11941 Domain of unknown function (DUF3459) CKQ55_RS10100 PF00128 Alpha amylase, catalytic domain CKQ55_RS10105 PF02378 Phosphotransferase system, EIIC CKQ55_RS10110 PF02056 Family 4 glycosyl hydrolase CKQ55_RS10110 PF11975 Family 4 glycosyl hydrolase C-terminal domain CKQ55_RS10115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS10125 PF13597 Anaerobic ribonucleoside-triphosphate reductase CKQ55_RS10125 PF03477 ATP cone domain CKQ55_RS10135 PF06715 Gp5 C-terminal repeat (3 copies) CKQ55_RS10135 PF04717 Type VI secretion system, phage-baseplate injector CKQ55_RS10155 PF00874 PRD domain CKQ55_RS10155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS10155 PF08279 HTH domain CKQ55_RS10155 PF05043 Mga helix-turn-helix domain CKQ55_RS10160 PF10282 Lactonase, 7-bladed beta-propeller CKQ55_RS10165 PF07071 KDGP aldolase CKQ55_RS10170 PF03841 L-seryl-tRNA selenium transferase CKQ55_RS10175 PF01979 Amidohydrolase family CKQ55_RS10205 PF07361 Cytochrome b562 CKQ55_RS10210 PF01523 Putative modulator of DNA gyrase CKQ55_RS10215 PF04751 Protein of unknown function (DUF615) CKQ55_RS10220 PF00171 Aldehyde dehydrogenase family CKQ55_RS10225 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS10240 PF01225 Mur ligase family, catalytic domain CKQ55_RS10240 PF02875 Mur ligase family, glutamate ligase domain CKQ55_RS10240 PF08245 Mur ligase middle domain CKQ55_RS10245 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CKQ55_RS10250 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS10255 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS10260 PF00005 ABC transporter CKQ55_RS10265 PF13407 Periplasmic binding protein domain CKQ55_RS10270 PF00719 Inorganic pyrophosphatase CKQ55_RS10275 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CKQ55_RS10280 PF04357 TamB, inner membrane protein subunit of TAM complex CKQ55_RS10285 PF01103 Surface antigen CKQ55_RS10285 PF17243 POTRA domain TamA domain 1 CKQ55_RS10285 PF07244 Surface antigen variable number repeat CKQ55_RS10290 PF01625 Peptide methionine sulfoxide reductase CKQ55_RS10295 PF01595 Cyclin M transmembrane N-terminal domain CKQ55_RS10295 PF03471 Transporter associated domain CKQ55_RS10295 PF00571 CBS domain CKQ55_RS10300 PF01306 LacY proton/sugar symporter CKQ55_RS10305 PF08532 Beta-galactosidase trimerisation domain CKQ55_RS10305 PF08533 Beta-galactosidase C-terminal domain CKQ55_RS10305 PF02449 Beta-galactosidase CKQ55_RS10310 PF12833 Helix-turn-helix domain CKQ55_RS10310 PF02311 AraC-like ligand binding domain CKQ55_RS10315 PF06526 Protein of unknown function (DUF1107) CKQ55_RS10320 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CKQ55_RS10325 PF00459 Inositol monophosphatase family CKQ55_RS10330 PF00149 Calcineurin-like phosphoesterase CKQ55_RS10330 PF02872 5'-nucleotidase, C-terminal domain CKQ55_RS10335 PF01638 HxlR-like helix-turn-helix CKQ55_RS10340 PF05368 NmrA-like family CKQ55_RS10345 PF12833 Helix-turn-helix domain CKQ55_RS10350 PF00892 EamA-like transporter family CKQ55_RS10355 PF04405 Domain of Unknown function (DUF542) CKQ55_RS10355 PF01814 Hemerythrin HHE cation binding domain CKQ55_RS10360 PF00324 Amino acid permease CKQ55_RS10365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CKQ55_RS10365 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CKQ55_RS10375 PF04225 Opacity-associated protein A LysM-like domain CKQ55_RS10375 PF08525 Opacity-associated protein A N-terminal motif CKQ55_RS10385 PF03948 Ribosomal protein L9, C-terminal domain CKQ55_RS10385 PF01281 Ribosomal protein L9, N-terminal domain CKQ55_RS10390 PF01084 Ribosomal protein S18 CKQ55_RS10395 PF00436 Single-strand binding protein family CKQ55_RS10400 PF01250 Ribosomal protein S6 CKQ55_RS10405 PF07338 Protein of unknown function (DUF1471) CKQ55_RS10415 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS10420 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS10425 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CKQ55_RS10430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS10435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS10440 PF03611 PTS system sugar-specific permease component CKQ55_RS10450 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS10450 PF00455 DeoR C terminal sensor domain CKQ55_RS10455 PF00326 Prolyl oligopeptidase family CKQ55_RS10460 PF07338 Protein of unknown function (DUF1471) CKQ55_RS10465 PF07338 Protein of unknown function (DUF1471) CKQ55_RS10470 PF18158 Adaptive response protein AidB N-terminal domain CKQ55_RS10470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CKQ55_RS10470 PF02770 Acyl-CoA dehydrogenase, middle domain CKQ55_RS10480 PF00588 SpoU rRNA Methylase family CKQ55_RS10480 PF08032 RNA 2'-O ribose methyltransferase substrate binding CKQ55_RS10485 PF00575 S1 RNA binding domain CKQ55_RS10485 PF17876 Cold shock domain CKQ55_RS10485 PF08461 Ribonuclease R winged-helix domain CKQ55_RS10485 PF00773 RNB domain CKQ55_RS10485 PF08206 Ribonuclease B OB domain CKQ55_RS10490 PF02082 Transcriptional regulator CKQ55_RS10495 PF00709 Adenylosuccinate synthetase CKQ55_RS10500 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CKQ55_RS10505 PF01145 SPFH domain / Band 7 family CKQ55_RS10510 PF12221 Bacterial membrane protein N terminal CKQ55_RS10510 PF01145 SPFH domain / Band 7 family CKQ55_RS10515 PF16360 GTP-binding GTPase Middle Region CKQ55_RS10515 PF13167 GTP-binding GTPase N-terminal CKQ55_RS10515 PF01926 50S ribosome-binding GTPase CKQ55_RS10520 PF17209 Hfq protein CKQ55_RS10530 PF01119 DNA mismatch repair protein, C-terminal domain CKQ55_RS10530 PF08676 MutL C terminal dimerisation domain CKQ55_RS10535 PF01520 N-acetylmuramoyl-L-alanine amidase CKQ55_RS10540 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CKQ55_RS10545 PF01256 Carbohydrate kinase CKQ55_RS10545 PF03853 YjeF-related protein N-terminus CKQ55_RS10550 PF08331 Domain of unknown function (DUF1730) CKQ55_RS10570 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS10575 PF00929 Exonuclease CKQ55_RS10585 PF03193 RsgA GTPase CKQ55_RS10590 PF02666 Phosphatidylserine decarboxylase CKQ55_RS10595 PF00924 Mechanosensitive ion channel CKQ55_RS10595 PF12794 Mechanosensitive ion channel inner membrane domain 1 CKQ55_RS10595 PF12795 Mechanosensitive ion channel porin domain CKQ55_RS10600 PF13520 Amino acid permease CKQ55_RS10605 PF00152 tRNA synthetases class II (D, K and N) CKQ55_RS10610 PF00890 FAD binding domain CKQ55_RS10610 PF02910 Fumarate reductase flavoprotein C-term CKQ55_RS10615 PF13183 4Fe-4S dicluster domain CKQ55_RS10615 PF13085 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS10620 PF02300 Fumarate reductase subunit C CKQ55_RS10625 PF02313 Fumarate reductase subunit D CKQ55_RS10630 PF08212 Lipocalin-like domain CKQ55_RS10635 PF00893 Small Multidrug Resistance protein CKQ55_RS10640 PF08085 Entericidin EcnA/B family CKQ55_RS10645 PF08085 Entericidin EcnA/B family CKQ55_RS10650 PF01132 Elongation factor P (EF-P) OB domain CKQ55_RS10650 PF08207 Elongation factor P (EF-P) KOW-like domain CKQ55_RS10650 PF09285 Elongation factor P, C-terminal CKQ55_RS10655 PF04055 Radical SAM superfamily CKQ55_RS10670 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS10670 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS10675 PF00577 Outer membrane usher protein CKQ55_RS10675 PF13954 PapC N-terminal domain CKQ55_RS10675 PF13953 PapC C-terminal domain CKQ55_RS10690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS10690 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS10695 PF00664 ABC transporter transmembrane region CKQ55_RS10695 PF00005 ABC transporter CKQ55_RS10695 PF03412 Peptidase C39 family CKQ55_RS10705 PF13698 Domain of unknown function (DUF4156) CKQ55_RS10710 PF00118 TCP-1/cpn60 chaperonin family CKQ55_RS10715 PF00166 Chaperonin 10 Kd subunit CKQ55_RS10720 PF13520 Amino acid permease CKQ55_RS10725 PF04186 FxsA cytoplasmic membrane protein CKQ55_RS10735 PF10415 Fumarase C C-terminus CKQ55_RS10735 PF00206 Lyase CKQ55_RS10740 PF03605 Anaerobic c4-dicarboxylate membrane transporter CKQ55_RS10745 PF03091 CutA1 divalent ion tolerance protein CKQ55_RS10750 PF02683 Cytochrome C biogenesis protein transmembrane region CKQ55_RS10750 PF11412 Disulphide bond corrector protein DsbC CKQ55_RS10770 PF00535 Glycosyl transferase family 2 CKQ55_RS10785 PF02525 Flavodoxin-like fold CKQ55_RS10800 PF03741 Integral membrane protein TerC family CKQ55_RS10805 PF00226 DnaJ domain CKQ55_RS10805 PF01556 DnaJ C terminal domain CKQ55_RS10815 PF08946 Osmosensory transporter coiled coil CKQ55_RS10815 PF00083 Sugar (and other) transporter CKQ55_RS10820 PF08274 PhnA Zinc-Ribbon CKQ55_RS10820 PF03831 PhnA domain CKQ55_RS10825 PF06983 3-demethylubiquinone-9 3-methyltransferase CKQ55_RS10830 PF07702 UTRA domain CKQ55_RS10830 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS10835 PF06754 Phosphonate metabolism protein PhnG CKQ55_RS10840 PF05845 Bacterial phosphonate metabolism protein (PhnH) CKQ55_RS10845 PF05861 Bacterial phosphonate metabolism protein (PhnI) CKQ55_RS10850 PF06007 Phosphonate metabolism protein PhnJ CKQ55_RS10855 PF00005 ABC transporter CKQ55_RS10860 PF00005 ABC transporter CKQ55_RS10865 PF07969 Amidohydrolase family CKQ55_RS10875 PF12706 Beta-lactamase superfamily domain CKQ55_RS10885 PF02502 Ribose/Galactose Isomerase CKQ55_RS10890 PF01380 SIS domain CKQ55_RS10890 PF01418 Helix-turn-helix domain, rpiR family CKQ55_RS10895 PF13407 Periplasmic binding protein domain CKQ55_RS10900 PF00005 ABC transporter CKQ55_RS10905 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS10910 PF00834 Ribulose-phosphate 3 epimerase family CKQ55_RS10915 PF00480 ROK family CKQ55_RS10925 PF08238 Sel1 repeat CKQ55_RS10930 PF00375 Sodium:dicarboxylate symporter family CKQ55_RS10940 PF00501 AMP-binding enzyme CKQ55_RS10940 PF16177 Acetyl-coenzyme A synthetase N-terminus CKQ55_RS10940 PF13193 AMP-binding enzyme C-terminal domain CKQ55_RS10945 PF04341 Protein of unknown function, DUF485 CKQ55_RS10950 PF00474 Sodium:solute symporter family CKQ55_RS10965 PF00419 Fimbrial protein CKQ55_RS10970 PF13953 PapC C-terminal domain CKQ55_RS10970 PF00577 Outer membrane usher protein CKQ55_RS10970 PF13954 PapC N-terminal domain CKQ55_RS10975 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS10975 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS10985 PF04172 LrgB-like family CKQ55_RS10990 PF03788 LrgA family CKQ55_RS10995 PF03466 LysR substrate binding domain CKQ55_RS10995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS11000 PF00999 Sodium/hydrogen exchanger family CKQ55_RS11005 PF00860 Permease family CKQ55_RS11015 PF02798 Glutathione S-transferase, N-terminal domain CKQ55_RS11015 PF00043 Glutathione S-transferase, C-terminal domain CKQ55_RS11020 PF09278 MerR, DNA binding CKQ55_RS11020 PF00376 MerR family regulatory protein CKQ55_RS11025 PF12833 Helix-turn-helix domain CKQ55_RS11030 PF00563 EAL domain CKQ55_RS11030 PF12792 CSS motif domain associated with EAL CKQ55_RS11035 PF15940 Family of unknown function CKQ55_RS11045 PF01103 Surface antigen CKQ55_RS11045 PF07244 Surface antigen variable number repeat CKQ55_RS11050 PF12833 Helix-turn-helix domain CKQ55_RS11055 PF00593 TonB dependent receptor CKQ55_RS11055 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS11060 PF01464 Transglycosylase SLT domain CKQ55_RS11065 PF00436 Single-strand binding protein family CKQ55_RS11075 PF17760 UvrA interaction domain CKQ55_RS11075 PF00005 ABC transporter CKQ55_RS11075 PF17755 UvrA DNA-binding domain CKQ55_RS11090 PF04237 YjbR CKQ55_RS11095 PF01894 Uncharacterised protein family UPF0047 CKQ55_RS11100 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CKQ55_RS11105 PF00155 Aminotransferase class I and II CKQ55_RS11110 PF00842 Alanine racemase, C-terminal domain CKQ55_RS11110 PF01168 Alanine racemase, N-terminal domain CKQ55_RS11115 PF03796 DnaB-like helicase C terminal domain CKQ55_RS11115 PF00772 DnaB-like helicase N terminal domain CKQ55_RS11120 PF00107 Zinc-binding dehydrogenase CKQ55_RS11120 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS11125 PF09583 Phage shock protein G (Phageshock_PspG) CKQ55_RS11130 PF01207 Dihydrouridine synthase (Dus) CKQ55_RS11140 PF01475 Ferric uptake regulator family CKQ55_RS11145 PF05532 CsbD-like CKQ55_RS11150 PF01554 MatE CKQ55_RS11155 PF01726 LexA DNA binding domain CKQ55_RS11155 PF00717 Peptidase S24-like CKQ55_RS11160 PF01219 Prokaryotic diacylglycerol kinase CKQ55_RS11165 PF01553 Acyltransferase CKQ55_RS11170 PF01040 UbiA prenyltransferase family CKQ55_RS11175 PF04345 Chorismate lyase CKQ55_RS11180 PF07148 Maltose operon periplasmic protein precursor (MalM) CKQ55_RS11185 PF02264 LamB porin CKQ55_RS11190 PF00005 ABC transporter CKQ55_RS11190 PF17912 MalK OB fold domain CKQ55_RS11200 PF01547 Bacterial extracellular solute-binding protein CKQ55_RS11210 PF14785 Maltose transport system permease protein MalF P2 domain CKQ55_RS11210 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS11215 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS11220 PF06146 Phosphate-starvation-inducible E CKQ55_RS11225 PF03313 Serine dehydratase alpha chain CKQ55_RS11240 PF01042 Endoribonuclease L-PSP CKQ55_RS11250 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS11250 PF14602 Hexapeptide repeat of succinyl-transferase CKQ55_RS11250 PF12804 MobA-like NTP transferase domain CKQ55_RS11255 PF00342 Phosphoglucose isomerase CKQ55_RS11265 PF00696 Amino acid kinase family CKQ55_RS11265 PF01842 ACT domain CKQ55_RS11270 PF10127 RNA repair pathway DNA polymerase beta family CKQ55_RS11285 PF06956 Regulator of RNA terminal phosphate cyclase CKQ55_RS11285 PF00158 Sigma-54 interaction domain CKQ55_RS11290 PF01758 Sodium Bile acid symporter family CKQ55_RS11295 PF11656 YjbD family (DUF3811) CKQ55_RS11300 PF01479 S4 domain CKQ55_RS11300 PF00849 RNA pseudouridylate synthase CKQ55_RS11305 PF04198 Putative sugar-binding domain CKQ55_RS11305 PF13936 Helix-turn-helix domain CKQ55_RS11310 PF00106 short chain dehydrogenase CKQ55_RS11315 PF03610 PTS system fructose IIA component CKQ55_RS11320 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS11325 PF03609 PTS system sorbose-specific iic component CKQ55_RS11330 PF03613 PTS system mannose/fructose/sorbose family IID component CKQ55_RS11335 PF00107 Zinc-binding dehydrogenase CKQ55_RS11335 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS11340 PF08501 Shikimate dehydrogenase substrate binding domain CKQ55_RS11355 PF03575 Peptidase family S51 CKQ55_RS11360 PF02690 Na+/Pi-cotransporter CKQ55_RS11365 PF02310 B12 binding domain CKQ55_RS11365 PF02965 Vitamin B12 dependent methionine synthase, activation domain CKQ55_RS11365 PF02607 B12 binding domain CKQ55_RS11365 PF02574 Homocysteine S-methyltransferase CKQ55_RS11365 PF00809 Pterin binding enzyme CKQ55_RS11370 PF09339 IclR helix-turn-helix domain CKQ55_RS11370 PF01614 Bacterial transcriptional regulator CKQ55_RS11380 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CKQ55_RS11385 PF00463 Isocitrate lyase family CKQ55_RS11390 PF01274 Malate synthase CKQ55_RS11395 PF04204 Homoserine O-succinyltransferase CKQ55_RS11400 PF13673 Acetyltransferase (GNAT) domain CKQ55_RS11435 PF01808 AICARFT/IMPCHase bienzyme CKQ55_RS11435 PF02142 MGS-like domain CKQ55_RS11440 PF02843 Phosphoribosylglycinamide synthetase, C domain CKQ55_RS11440 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CKQ55_RS11440 PF02844 Phosphoribosylglycinamide synthetase, N domain CKQ55_RS11450 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS11450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS11455 PF13801 Heavy-metal resistance CKQ55_RS11460 PF07356 Protein of unknown function (DUF1481) CKQ55_RS11465 PF00216 Bacterial DNA-binding protein CKQ55_RS11470 PF04222 Protein of unknown function (DUF416) CKQ55_RS11475 PF04493 Endonuclease V CKQ55_RS11480 PF01208 Uroporphyrinogen decarboxylase (URO-D) CKQ55_RS11485 PF09297 NADH pyrophosphatase zinc ribbon domain CKQ55_RS11485 PF00293 NUDIX domain CKQ55_RS11490 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CKQ55_RS11495 PF13667 ThiC-associated domain CKQ55_RS11495 PF01964 Radical SAM ThiC family CKQ55_RS11500 PF02581 Thiamine monophosphate synthase CKQ55_RS11505 PF00899 ThiF family CKQ55_RS11510 PF02597 ThiS family CKQ55_RS11515 PF05690 Thiazole biosynthesis protein ThiG CKQ55_RS11520 PF04055 Radical SAM superfamily CKQ55_RS11520 PF06968 Biotin and Thiamin Synthesis associated domain CKQ55_RS11525 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS11530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS11535 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CKQ55_RS11540 PF03605 Anaerobic c4-dicarboxylate membrane transporter CKQ55_RS11545 PF05000 RNA polymerase Rpb1, domain 4 CKQ55_RS11545 PF04998 RNA polymerase Rpb1, domain 5 CKQ55_RS11545 PF00623 RNA polymerase Rpb1, domain 2 CKQ55_RS11545 PF04997 RNA polymerase Rpb1, domain 1 CKQ55_RS11545 PF04983 RNA polymerase Rpb1, domain 3 CKQ55_RS11550 PF04561 RNA polymerase Rpb2, domain 2 CKQ55_RS11550 PF04565 RNA polymerase Rpb2, domain 3 CKQ55_RS11550 PF10385 RNA polymerase beta subunit external 1 domain CKQ55_RS11550 PF00562 RNA polymerase Rpb2, domain 6 CKQ55_RS11550 PF04560 RNA polymerase Rpb2, domain 7 CKQ55_RS11550 PF04563 RNA polymerase beta subunit CKQ55_RS11555 PF16320 Ribosomal protein L7/L12 dimerisation domain CKQ55_RS11555 PF00542 Ribosomal protein L7/L12 C-terminal domain CKQ55_RS11560 PF00466 Ribosomal protein L10 CKQ55_RS11570 PF00687 Ribosomal protein L1p/L10e family CKQ55_RS11575 PF00298 Ribosomal protein L11, RNA binding domain CKQ55_RS11575 PF03946 Ribosomal protein L11, N-terminal domain CKQ55_RS11580 PF02357 Transcription termination factor nusG CKQ55_RS11580 PF00467 KOW motif CKQ55_RS11585 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CKQ55_RS11595 PF03143 Elongation factor Tu C-terminal domain CKQ55_RS11595 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS11595 PF03144 Elongation factor Tu domain 2 CKQ55_RS11620 PF00485 Phosphoribulokinase / Uridine kinase family CKQ55_RS11625 PF08279 HTH domain CKQ55_RS11625 PF02237 Biotin protein ligase C terminal domain CKQ55_RS11625 PF03099 Biotin/lipoate A/B protein ligase family CKQ55_RS11630 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CKQ55_RS11630 PF01565 FAD binding domain CKQ55_RS11660 PF12724 Flavodoxin domain CKQ55_RS11665 PF02386 Cation transport protein CKQ55_RS11670 PF09186 Domain of unknown function (DUF1949) CKQ55_RS11670 PF01205 Uncharacterized protein family UPF0029 CKQ55_RS11675 PF00557 Metallopeptidase family M24 CKQ55_RS11685 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CKQ55_RS11685 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CKQ55_RS11685 PF00378 Enoyl-CoA hydratase/isomerase CKQ55_RS11690 PF02803 Thiolase, C-terminal domain CKQ55_RS11690 PF00108 Thiolase, N-terminal domain CKQ55_RS11705 PF00175 Oxidoreductase NAD-binding domain CKQ55_RS11705 PF00970 Oxidoreductase FAD-binding domain CKQ55_RS11710 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CKQ55_RS11715 PF02357 Transcription termination factor nusG CKQ55_RS11720 PF01026 TatD related DNase CKQ55_RS11725 PF00902 Sec-independent protein translocase protein (TatC) CKQ55_RS11735 PF02416 mttA/Hcf106 family CKQ55_RS11740 PF03109 ABC1 family CKQ55_RS11745 PF02036 SCP-2 sterol transfer family CKQ55_RS11750 PF01209 ubiE/COQ5 methyltransferase family CKQ55_RS11755 PF02646 RmuC family CKQ55_RS11760 PF01048 Phosphorylase superfamily CKQ55_RS11765 PF01738 Dienelactone hydrolase family CKQ55_RS11770 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS11775 PF08267 Cobalamin-independent synthase, N-terminal domain CKQ55_RS11775 PF01717 Cobalamin-independent synthase, Catalytic domain CKQ55_RS11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS11780 PF03466 LysR substrate binding domain CKQ55_RS11785 PF00892 EamA-like transporter family CKQ55_RS11795 PF12146 Serine aminopeptidase, S33 CKQ55_RS11800 PF01810 LysE type translocator CKQ55_RS11805 PF04754 Putative transposase, YhgA-like CKQ55_RS11810 PF01810 LysE type translocator CKQ55_RS11815 PF09382 RQC domain CKQ55_RS11815 PF00271 Helicase conserved C-terminal domain CKQ55_RS11815 PF00270 DEAD/DEAH box helicase CKQ55_RS11815 PF00570 HRDC domain CKQ55_RS11815 PF16124 RecQ zinc-binding CKQ55_RS11820 PF02253 Phospholipase A1 CKQ55_RS11825 PF03061 Thioesterase superfamily CKQ55_RS11830 PF00892 EamA-like transporter family CKQ55_RS11835 PF01544 CorA-like Mg2+ transporter protein CKQ55_RS11840 PF13361 UvrD-like helicase C-terminal domain CKQ55_RS11840 PF00580 UvrD/REP helicase N-terminal domain CKQ55_RS11845 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS11850 PF00589 Phage integrase family CKQ55_RS11850 PF02899 Phage integrase, N-terminal SAM-like domain CKQ55_RS11855 PF04340 Protein of unknown function, DUF484 CKQ55_RS11860 PF01678 Diaminopimelate epimerase CKQ55_RS11865 PF13627 Prokaryotic lipoprotein-attachment site CKQ55_RS11870 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS11870 PF00155 Aminotransferase class I and II CKQ55_RS11880 PF07690 Major Facilitator Superfamily CKQ55_RS11890 PF01491 Frataxin-like domain CKQ55_RS11895 PF12633 Adenylate cyclase NT domain CKQ55_RS11895 PF01295 Adenylate cyclase, class-I CKQ55_RS11900 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CKQ55_RS11900 PF03900 Porphobilinogen deaminase, C-terminal domain CKQ55_RS11905 PF02602 Uroporphyrinogen-III synthase HemD CKQ55_RS11910 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CKQ55_RS11915 PF07219 HemY protein N-terminus CKQ55_RS11915 PF07719 Tetratricopeptide repeat CKQ55_RS11940 PF00324 Amino acid permease CKQ55_RS11945 PF03808 Glycosyl transferase WecB/TagA/CpsF family CKQ55_RS11950 PF06899 WzyE protein, O-antigen assembly polymerase CKQ55_RS11955 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CKQ55_RS11960 PF01943 Polysaccharide biosynthesis protein CKQ55_RS11965 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CKQ55_RS11975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CKQ55_RS11975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CKQ55_RS11975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CKQ55_RS11980 PF02350 UDP-N-acetylglucosamine 2-epimerase CKQ55_RS11985 PF02706 Chain length determinant protein CKQ55_RS11990 PF00953 Glycosyl transferase family 4 CKQ55_RS11995 PF07498 Rho termination factor, N-terminal domain CKQ55_RS11995 PF07497 Rho termination factor, RNA-binding domain CKQ55_RS11995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CKQ55_RS12000 PF00085 Thioredoxin CKQ55_RS12005 PF00270 DEAD/DEAH box helicase CKQ55_RS12005 PF00271 Helicase conserved C-terminal domain CKQ55_RS12010 PF02541 Ppx/GppA phosphatase family CKQ55_RS12020 PF03747 ADP-ribosylglycohydrolase CKQ55_RS12035 PF13361 UvrD-like helicase C-terminal domain CKQ55_RS12035 PF00580 UvrD/REP helicase N-terminal domain CKQ55_RS12040 PF04973 Nicotinamide mononucleotide transporter CKQ55_RS12045 PF01048 Phosphorylase superfamily CKQ55_RS12065 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CKQ55_RS12065 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CKQ55_RS12070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS12070 PF03466 LysR substrate binding domain CKQ55_RS12075 PF00585 C-terminal regulatory domain of Threonine dehydratase CKQ55_RS12075 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS12080 PF00920 Dehydratase family CKQ55_RS12085 PF01063 Amino-transferase class IV CKQ55_RS12095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CKQ55_RS12095 PF00205 Thiamine pyrophosphate enzyme, central domain CKQ55_RS12095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS12100 PF08046 IlvGEDA operon leader peptide CKQ55_RS12105 PF01078 Magnesium chelatase, subunit ChlI CKQ55_RS12105 PF13335 Magnesium chelatase, subunit ChlI C-terminal CKQ55_RS12110 PF04219 Protein of unknown function, DUF CKQ55_RS12115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS12115 PF03466 LysR substrate binding domain CKQ55_RS12155 PF01177 Asp/Glu/Hydantoin racemase CKQ55_RS12160 PF00593 TonB dependent receptor CKQ55_RS12160 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS12165 PF05958 tRNA (Uracil-5-)-methyltransferase CKQ55_RS12170 PF07226 Protein of unknown function (DUF1422) CKQ55_RS12175 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS12180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CKQ55_RS12180 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS12185 PF03466 LysR substrate binding domain CKQ55_RS12185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS12195 PF14698 Argininosuccinate lyase C-terminal CKQ55_RS12195 PF00206 Lyase CKQ55_RS12200 PF00696 Amino acid kinase family CKQ55_RS12205 PF01118 Semialdehyde dehydrogenase, NAD binding domain CKQ55_RS12205 PF02774 Semialdehyde dehydrogenase, dimerisation domain CKQ55_RS12210 PF07687 Peptidase dimerisation domain CKQ55_RS12210 PF01546 Peptidase family M20/M25/M40 CKQ55_RS12215 PF00311 Phosphoenolpyruvate carboxylase CKQ55_RS12220 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CKQ55_RS12225 PF12833 Helix-turn-helix domain CKQ55_RS12230 PF00923 Transaldolase/Fructose-6-phosphate aldolase CKQ55_RS12235 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS12240 PF00455 DeoR C terminal sensor domain CKQ55_RS12240 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS12245 PF02219 Methylenetetrahydrofolate reductase CKQ55_RS12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS12250 PF03466 LysR substrate binding domain CKQ55_RS12255 PF02627 Carboxymuconolactone decarboxylase family CKQ55_RS12260 PF00696 Amino acid kinase family CKQ55_RS12260 PF03447 Homoserine dehydrogenase, NAD binding domain CKQ55_RS12260 PF00742 Homoserine dehydrogenase CKQ55_RS12265 PF01053 Cys/Met metabolism PLP-dependent enzyme CKQ55_RS12270 PF01340 Met Apo-repressor, MetJ CKQ55_RS12275 PF01197 Ribosomal protein L31 CKQ55_RS12280 PF00271 Helicase conserved C-terminal domain CKQ55_RS12280 PF17764 3′ DNA-binding domain (3′BD) CKQ55_RS12280 PF18074 Primosomal protein N C-terminal domain CKQ55_RS12280 PF00270 DEAD/DEAH box helicase CKQ55_RS12280 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CKQ55_RS12285 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS12290 PF05036 Sporulation related domain CKQ55_RS12295 PF00227 Proteasome subunit CKQ55_RS12300 PF07724 AAA domain (Cdc48 subfamily) CKQ55_RS12300 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS12300 PF10431 C-terminal, D2-small domain, of ClpB protein CKQ55_RS12305 PF01040 UbiA prenyltransferase family CKQ55_RS12310 PF03737 Aldolase/RraA CKQ55_RS12315 PF00365 Phosphofructokinase CKQ55_RS12320 PF16916 Dimerisation domain of Zinc Transporter CKQ55_RS12320 PF01545 Cation efflux family CKQ55_RS12325 PF07813 LTXXQ motif family protein CKQ55_RS12330 PF00072 Response regulator receiver domain CKQ55_RS12330 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS12335 PF16527 Two-component sensor protein CpxA, periplasmic domain CKQ55_RS12335 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS12335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS12335 PF00672 HAMP domain CKQ55_RS12340 PF03475 3-alpha domain CKQ55_RS12340 PF03473 MOSC domain CKQ55_RS12345 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CKQ55_RS12345 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CKQ55_RS12350 PF06379 L-rhamnose-proton symport protein (RhaT) CKQ55_RS12355 PF02311 AraC-like ligand binding domain CKQ55_RS12355 PF12833 Helix-turn-helix domain CKQ55_RS12360 PF02311 AraC-like ligand binding domain CKQ55_RS12360 PF12833 Helix-turn-helix domain CKQ55_RS12370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS12370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS12375 PF06134 L-rhamnose isomerase (RhaA) CKQ55_RS12380 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS12385 PF13407 Periplasmic binding protein domain CKQ55_RS12390 PF00005 ABC transporter CKQ55_RS12395 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS12400 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS12405 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS12410 PF05336 L-rhamnose mutarotase CKQ55_RS12420 PF05048 Periplasmic copper-binding protein (NosD) CKQ55_RS12420 PF18835 Beta helix repeat of Inulin fructotransferase CKQ55_RS12425 PF00251 Glycosyl hydrolases family 32 N-terminal domain CKQ55_RS12425 PF08244 Glycosyl hydrolases family 32 C terminal CKQ55_RS12435 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS12450 PF05552 Conserved TM helix CKQ55_RS12450 PF00924 Mechanosensitive ion channel CKQ55_RS12465 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS12465 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS12470 PF00419 Fimbrial protein CKQ55_RS12475 PF00419 Fimbrial protein CKQ55_RS12480 PF00419 Fimbrial protein CKQ55_RS12485 PF13953 PapC C-terminal domain CKQ55_RS12485 PF00577 Outer membrane usher protein CKQ55_RS12485 PF13954 PapC N-terminal domain CKQ55_RS12490 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS12490 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS12495 PF00419 Fimbrial protein CKQ55_RS12500 PF00419 Fimbrial protein CKQ55_RS12515 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS12515 PF12464 Maltose acetyltransferase CKQ55_RS12520 PF01306 LacY proton/sugar symporter CKQ55_RS12525 PF16874 Glycosyl hydrolase family 36 C-terminal domain CKQ55_RS12525 PF16875 Glycosyl hydrolase family 36 N-terminal domain CKQ55_RS12530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CKQ55_RS12530 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS12535 PF07690 Major Facilitator Superfamily CKQ55_RS12565 PF03591 AzlC protein CKQ55_RS12580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS12590 PF01116 Fructose-bisphosphate aldolase class-II CKQ55_RS12595 PF03611 PTS system sugar-specific permease component CKQ55_RS12605 PF00365 Phosphofructokinase CKQ55_RS12610 PF00874 PRD domain CKQ55_RS12610 PF00158 Sigma-54 interaction domain CKQ55_RS12620 PF07470 Glycosyl Hydrolase Family 88 CKQ55_RS12625 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS12630 PF03609 PTS system sorbose-specific iic component CKQ55_RS12635 PF03613 PTS system mannose/fructose/sorbose family IID component CKQ55_RS12645 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CKQ55_RS12645 PF04616 Glycosyl hydrolases family 43 CKQ55_RS12655 PF02634 FdhD/NarQ family CKQ55_RS12660 PF00384 Molybdopterin oxidoreductase CKQ55_RS12660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CKQ55_RS12660 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS12665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CKQ55_RS12665 PF00384 Molybdopterin oxidoreductase CKQ55_RS12665 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS12670 PF13247 4Fe-4S dicluster domain CKQ55_RS12670 PF09163 Formate dehydrogenase N, transmembrane CKQ55_RS12675 PF01292 Prokaryotic cytochrome b561 CKQ55_RS12680 PF04216 Protein involved in formate dehydrogenase formation CKQ55_RS12685 PF07859 alpha/beta hydrolase fold CKQ55_RS12690 PF09500 Putative thioesterase (yiiD_Cterm) CKQ55_RS12690 PF00583 Acetyltransferase (GNAT) family CKQ55_RS12695 PF02580 D-Tyr-tRNA(Tyr) deacylase CKQ55_RS12700 PF03631 Virulence factor BrkB CKQ55_RS12705 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS12710 PF00679 Elongation factor G C-terminus CKQ55_RS12710 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS12710 PF03144 Elongation factor Tu domain 2 CKQ55_RS12720 PF00120 Glutamine synthetase, catalytic domain CKQ55_RS12720 PF03951 Glutamine synthetase, beta-Grasp domain CKQ55_RS12730 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS12730 PF00989 PAS fold CKQ55_RS12730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS12735 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS12735 PF00158 Sigma-54 interaction domain CKQ55_RS12735 PF00072 Response regulator receiver domain CKQ55_RS12745 PF04055 Radical SAM superfamily CKQ55_RS12745 PF06969 HemN C-terminal domain CKQ55_RS12755 PF04220 Der GTPase activator (YihI) CKQ55_RS12760 PF01926 50S ribosome-binding GTPase CKQ55_RS12770 PF00476 DNA polymerase family A CKQ55_RS12770 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CKQ55_RS12770 PF01367 5'-3' exonuclease, C-terminal SAM fold CKQ55_RS12770 PF01612 3'-5' exonuclease CKQ55_RS12775 PF01553 Acyltransferase CKQ55_RS12780 PF01323 DSBA-like thioredoxin domain CKQ55_RS12785 PF01636 Phosphotransferase enzyme family CKQ55_RS12790 PF06288 Protein of unknown function (DUF1040) CKQ55_RS12795 PF12804 MobA-like NTP transferase domain CKQ55_RS12800 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CKQ55_RS12820 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS12820 PF07729 FCD domain CKQ55_RS12825 PF07690 Major Facilitator Superfamily CKQ55_RS12830 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS12835 PF00294 pfkB family carbohydrate kinase CKQ55_RS12840 PF13407 Periplasmic binding protein domain CKQ55_RS12845 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS12850 PF00005 ABC transporter CKQ55_RS12855 PF05025 RbsD / FucU transport protein family CKQ55_RS12860 PF02705 K+ potassium transporter CKQ55_RS12865 PF17868 AAA lid domain CKQ55_RS12865 PF07728 AAA domain (dynein-related subfamily) CKQ55_RS12865 PF12592 Protein of unknown function (DUF3763) CKQ55_RS12870 PF05762 VWA domain containing CoxE-like protein CKQ55_RS12875 PF03590 Aspartate-ammonia ligase CKQ55_RS12880 PF01037 Lrp/AsnC ligand binding domain CKQ55_RS12885 PF00258 Flavodoxin CKQ55_RS12890 PF01134 Glucose inhibited division protein A CKQ55_RS12890 PF13932 GidA associated domain CKQ55_RS12895 PF02527 rRNA small subunit methyltransferase G CKQ55_RS12900 PF03899 ATP synthase I chain CKQ55_RS12905 PF00119 ATP synthase A chain CKQ55_RS12910 PF00137 ATP synthase subunit C CKQ55_RS12915 PF00430 ATP synthase B/B' CF(0) CKQ55_RS12920 PF00213 ATP synthase delta (OSCP) subunit CKQ55_RS12925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CKQ55_RS12925 PF00306 ATP synthase alpha/beta chain, C terminal domain CKQ55_RS12925 PF02874 ATP synthase alpha/beta family, beta-barrel domain CKQ55_RS12930 PF00231 ATP synthase CKQ55_RS12935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CKQ55_RS12935 PF02874 ATP synthase alpha/beta family, beta-barrel domain CKQ55_RS12940 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CKQ55_RS12940 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CKQ55_RS12945 PF13229 Right handed beta helix region CKQ55_RS12950 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS12950 PF12804 MobA-like NTP transferase domain CKQ55_RS12955 PF01380 SIS domain CKQ55_RS12960 PF12849 PBP superfamily domain CKQ55_RS12965 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS12970 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS12975 PF00005 ABC transporter CKQ55_RS12980 PF01895 PhoU domain CKQ55_RS12985 PF11471 Maltoporin periplasmic N-terminal extension CKQ55_RS12985 PF02264 LamB porin CKQ55_RS12990 PF00756 Putative esterase CKQ55_RS12990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CKQ55_RS12995 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CKQ55_RS13000 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS13010 PF00860 Permease family CKQ55_RS13015 PF03358 NADPH-dependent FMN reductase CKQ55_RS13025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS13025 PF03466 LysR substrate binding domain CKQ55_RS13030 PF07690 Major Facilitator Superfamily CKQ55_RS13035 PF00583 Acetyltransferase (GNAT) family CKQ55_RS13040 PF10396 GTP-binding protein TrmE N-terminus CKQ55_RS13040 PF12631 MnmE helical domain CKQ55_RS13040 PF01926 50S ribosome-binding GTPase CKQ55_RS13045 PF02096 60Kd inner membrane protein CKQ55_RS13045 PF14849 YidC periplasmic domain CKQ55_RS13050 PF01809 Putative membrane protein insertion efficiency factor CKQ55_RS13055 PF00825 Ribonuclease P CKQ55_RS13060 PF00468 Ribosomal protein L34 CKQ55_RS13070 PF08299 Bacterial dnaA protein helix-turn-helix CKQ55_RS13070 PF00308 Bacterial dnaA protein CKQ55_RS13070 PF11638 DnaA N-terminal domain CKQ55_RS13075 PF02768 DNA polymerase III beta subunit, C-terminal domain CKQ55_RS13075 PF02767 DNA polymerase III beta subunit, central domain CKQ55_RS13075 PF00712 DNA polymerase III beta subunit, N-terminal domain CKQ55_RS13080 PF02463 RecF/RecN/SMC N terminal domain CKQ55_RS13085 PF18053 DNA gyrase B subunit insert domain CKQ55_RS13085 PF00986 DNA gyrase B subunit, carboxyl terminus CKQ55_RS13085 PF00204 DNA gyrase B CKQ55_RS13085 PF01751 Toprim domain CKQ55_RS13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS13090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS13090 PF03466 LysR substrate binding domain CKQ55_RS13095 PF00107 Zinc-binding dehydrogenase CKQ55_RS13095 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS13105 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS13105 PF07729 FCD domain CKQ55_RS13110 PF05035 2-keto-3-deoxy-galactonokinase CKQ55_RS13115 PF01081 KDPG and KHG aldolase CKQ55_RS13120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS13120 PF13378 Enolase C-terminal domain-like CKQ55_RS13125 PF07690 Major Facilitator Superfamily CKQ55_RS13130 PF07676 WD40-like Beta Propeller Repeat CKQ55_RS13130 PF12566 Protein of unknown function (DUF3748) CKQ55_RS13135 PF07119 Protein of unknown function (DUF1375) CKQ55_RS13140 PF00011 Hsp20/alpha crystallin family CKQ55_RS13145 PF00011 Hsp20/alpha crystallin family CKQ55_RS13150 PF06826 Predicted Permease Membrane Region CKQ55_RS13150 PF02080 TrkA-C domain CKQ55_RS13155 PF07702 UTRA domain CKQ55_RS13155 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS13160 PF02378 Phosphotransferase system, EIIC CKQ55_RS13160 PF00367 phosphotransferase system, EIIB CKQ55_RS13165 PF02056 Family 4 glycosyl hydrolase CKQ55_RS13165 PF11975 Family 4 glycosyl hydrolase C-terminal domain CKQ55_RS13170 PF02656 Domain of unknown function (DUF202) CKQ55_RS13175 PF02656 Domain of unknown function (DUF202) CKQ55_RS13185 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS13190 PF02447 GntP family permease CKQ55_RS13195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS13195 PF03466 LysR substrate binding domain CKQ55_RS13200 PF07690 Major Facilitator Superfamily CKQ55_RS13225 PF00205 Thiamine pyrophosphate enzyme, central domain CKQ55_RS13225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS13225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CKQ55_RS13230 PF01842 ACT domain CKQ55_RS13235 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS13235 PF00072 Response regulator receiver domain CKQ55_RS13240 PF05231 MASE1 CKQ55_RS13240 PF07730 Histidine kinase CKQ55_RS13240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS13245 PF07690 Major Facilitator Superfamily CKQ55_RS13250 PF07690 Major Facilitator Superfamily CKQ55_RS13255 PF06711 Protein of unknown function (DUF1198) CKQ55_RS13265 PF01381 Helix-turn-helix CKQ55_RS13280 PF00266 Aminotransferase class-V CKQ55_RS13285 PF07702 UTRA domain CKQ55_RS13285 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS13290 PF01547 Bacterial extracellular solute-binding protein CKQ55_RS13295 PF00005 ABC transporter CKQ55_RS13295 PF08402 TOBE domain CKQ55_RS13300 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS13305 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS13310 PF02264 LamB porin CKQ55_RS13315 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CKQ55_RS13320 PF02378 Phosphotransferase system, EIIC CKQ55_RS13320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS13325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS13330 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS13340 PF04754 Putative transposase, YhgA-like CKQ55_RS13350 PF00892 EamA-like transporter family CKQ55_RS13365 PF00367 phosphotransferase system, EIIB CKQ55_RS13365 PF02378 Phosphotransferase system, EIIC CKQ55_RS13370 PF13580 SIS domain CKQ55_RS13375 PF07690 Major Facilitator Superfamily CKQ55_RS13380 PF02321 Outer membrane efflux protein CKQ55_RS13390 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS13390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS13400 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS13400 PF13977 BetI-type transcriptional repressor, C-terminal CKQ55_RS13405 PF07690 Major Facilitator Superfamily CKQ55_RS13410 PF03466 LysR substrate binding domain CKQ55_RS13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS13425 PF03180 NLPA lipoprotein CKQ55_RS13435 PF00293 NUDIX domain CKQ55_RS13440 PF12706 Beta-lactamase superfamily domain CKQ55_RS13445 PF01965 DJ-1/PfpI family CKQ55_RS13450 PF00107 Zinc-binding dehydrogenase CKQ55_RS13450 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS13460 PF00107 Zinc-binding dehydrogenase CKQ55_RS13460 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS13470 PF01202 Shikimate kinase CKQ55_RS13505 PF01055 Glycosyl hydrolases family 31 CKQ55_RS13505 PF13802 Galactose mutarotase-like CKQ55_RS13510 PF08279 HTH domain CKQ55_RS13510 PF05043 Mga helix-turn-helix domain CKQ55_RS13510 PF00874 PRD domain CKQ55_RS13510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS13510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS13515 PF02378 Phosphotransferase system, EIIC CKQ55_RS13515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS13515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS13520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS13525 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS13530 PF01116 Fructose-bisphosphate aldolase class-II CKQ55_RS13535 PF01116 Fructose-bisphosphate aldolase class-II CKQ55_RS13540 PF00480 ROK family CKQ55_RS13555 PF11975 Family 4 glycosyl hydrolase C-terminal domain CKQ55_RS13555 PF02056 Family 4 glycosyl hydrolase CKQ55_RS13560 PF00367 phosphotransferase system, EIIB CKQ55_RS13560 PF02378 Phosphotransferase system, EIIC CKQ55_RS13565 PF05170 AsmA family CKQ55_RS13570 PF00860 Permease family CKQ55_RS13575 PF03616 Sodium/glutamate symporter CKQ55_RS13580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS13580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS13585 PF00230 Major intrinsic protein CKQ55_RS13590 PF06005 Cell division protein ZapB CKQ55_RS13600 PF02611 CDP-diacylglycerol pyrophosphatase CKQ55_RS13610 PF00121 Triosephosphate isomerase CKQ55_RS13615 PF07305 Protein of unknown function (DUF1454) CKQ55_RS13620 PF05656 Protein of unknown function (DUF805) CKQ55_RS13625 PF00970 Oxidoreductase FAD-binding domain CKQ55_RS13625 PF00175 Oxidoreductase NAD-binding domain CKQ55_RS13630 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CKQ55_RS13635 PF17191 RecG wedge domain CKQ55_RS13635 PF00270 DEAD/DEAH box helicase CKQ55_RS13635 PF00271 Helicase conserved C-terminal domain CKQ55_RS13640 PF00588 SpoU rRNA Methylase family CKQ55_RS13640 PF12105 SpoU, rRNA methylase, C-terminal CKQ55_RS13645 PF02824 TGS domain CKQ55_RS13645 PF04607 Region found in RelA / SpoT proteins CKQ55_RS13645 PF13291 ACT domain CKQ55_RS13650 PF01192 RNA polymerase Rpb6 CKQ55_RS13655 PF00625 Guanylate kinase CKQ55_RS13660 PF01653 NAD-dependent DNA ligase adenylation domain CKQ55_RS13660 PF03120 NAD-dependent DNA ligase OB-fold domain CKQ55_RS13665 PF03458 UPF0126 domain CKQ55_RS13675 PF08340 Domain of unknown function (DUF1732) CKQ55_RS13675 PF03755 YicC-like family, N-terminal region CKQ55_RS13680 PF01138 3' exoribonuclease family, domain 1 CKQ55_RS13680 PF03725 3' exoribonuclease family, domain 2 CKQ55_RS13685 PF00156 Phosphoribosyl transferase domain CKQ55_RS13690 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS13695 PF00692 dUTPase CKQ55_RS13700 PF04127 DNA / pantothenate metabolism flavoprotein CKQ55_RS13700 PF02441 Flavoprotein CKQ55_RS13705 PF04002 RadC-like JAB domain CKQ55_RS13710 PF00830 Ribosomal L28 family CKQ55_RS13715 PF00471 Ribosomal protein L33 CKQ55_RS13720 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CKQ55_RS13720 PF06827 Zinc finger found in FPG and IleRS CKQ55_RS13720 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CKQ55_RS13725 PF01467 Cytidylyltransferase-like CKQ55_RS13730 PF00535 Glycosyl transferase family 2 CKQ55_RS13735 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CKQ55_RS13740 PF00535 Glycosyl transferase family 2 CKQ55_RS13745 PF13439 Glycosyltransferase Family 4 CKQ55_RS13745 PF00534 Glycosyl transferases group 1 CKQ55_RS13750 PF00534 Glycosyl transferases group 1 CKQ55_RS13750 PF13439 Glycosyltransferase Family 4 CKQ55_RS13755 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CKQ55_RS13780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CKQ55_RS13785 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CKQ55_RS13790 PF01370 NAD dependent epimerase/dehydratase family CKQ55_RS13795 PF00155 Aminotransferase class I and II CKQ55_RS13800 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS13800 PF00107 Zinc-binding dehydrogenase CKQ55_RS13805 PF00535 Glycosyl transferase family 2 CKQ55_RS13810 PF04748 Divergent polysaccharide deacetylase CKQ55_RS13815 PF01551 Peptidase family M23 CKQ55_RS13820 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CKQ55_RS13820 PF01676 Metalloenzyme superfamily CKQ55_RS13825 PF00581 Rhodanese-like domain CKQ55_RS13830 PF00462 Glutaredoxin CKQ55_RS13835 PF02556 Preprotein translocase subunit SecB CKQ55_RS13840 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CKQ55_RS13840 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CKQ55_RS13845 PF06426 Serine acetyltransferase, N-terminal CKQ55_RS13845 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS13850 PF00588 SpoU rRNA Methylase family CKQ55_RS13855 PF01070 FMN-dependent dehydrogenase CKQ55_RS13860 PF07729 FCD domain CKQ55_RS13860 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS13865 PF02652 L-lactate permease CKQ55_RS13870 PF10928 Protein of unknown function (DUF2810) CKQ55_RS13880 PF05068 Mannitol repressor CKQ55_RS13885 PF01232 Mannitol dehydrogenase Rossmann domain CKQ55_RS13885 PF08125 Mannitol dehydrogenase C-terminal domain CKQ55_RS13890 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS13890 PF02378 Phosphotransferase system, EIIC CKQ55_RS13890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS13895 PF11742 Protein of unknown function (DUF3302) CKQ55_RS13900 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS13900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS13905 PF13417 Glutathione S-transferase, N-terminal domain CKQ55_RS13905 PF00043 Glutathione S-transferase, C-terminal domain CKQ55_RS13910 PF03841 L-seryl-tRNA selenium transferase CKQ55_RS13910 PF12390 Selenocysteine synthase N terminal CKQ55_RS13915 PF09107 Elongation factor SelB, winged helix CKQ55_RS13915 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS13915 PF09106 Elongation factor SelB, winged helix CKQ55_RS13915 PF03144 Elongation factor Tu domain 2 CKQ55_RS13920 PF07944 Beta-L-arabinofuranosidase, GH127 CKQ55_RS13930 PF02311 AraC-like ligand binding domain CKQ55_RS13930 PF12833 Helix-turn-helix domain CKQ55_RS13935 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS13940 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS13945 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CKQ55_RS13950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS13950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS13955 PF07690 Major Facilitator Superfamily CKQ55_RS13960 PF16154 Domain of unknown function (DUF4862) CKQ55_RS13965 PF04074 YhcH/YjgK/YiaL CKQ55_RS13970 PF02615 Malate/L-lactate dehydrogenase CKQ55_RS13975 PF01614 Bacterial transcriptional regulator CKQ55_RS13975 PF09339 IclR helix-turn-helix domain CKQ55_RS13980 PF12800 4Fe-4S binding domain CKQ55_RS13980 PF13247 4Fe-4S dicluster domain CKQ55_RS13985 PF00155 Aminotransferase class I and II CKQ55_RS13990 PF00128 Alpha amylase, catalytic domain CKQ55_RS14000 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CKQ55_RS14005 PF12833 Helix-turn-helix domain CKQ55_RS14010 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS14015 PF00005 ABC transporter CKQ55_RS14020 PF13407 Periplasmic binding protein domain CKQ55_RS14030 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS14030 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS14035 PF05360 yiaA/B two helix domain CKQ55_RS14040 PF01757 Acyltransferase family CKQ55_RS14045 PF13983 YsaB-like lipoprotein CKQ55_RS14050 PF02091 Glycyl-tRNA synthetase alpha subunit CKQ55_RS14055 PF05746 DALR anticodon binding domain CKQ55_RS14055 PF02092 Glycyl-tRNA synthetase beta subunit CKQ55_RS14060 PF01848 Hok/gef family CKQ55_RS14065 PF00005 ABC transporter CKQ55_RS14065 PF12848 ABC transporter CKQ55_RS14070 PF00313 'Cold-shock' DNA-binding domain CKQ55_RS14075 PF01381 Helix-turn-helix CKQ55_RS14080 PF07690 Major Facilitator Superfamily CKQ55_RS14085 PF11254 Protein of unknown function (DUF3053) CKQ55_RS14090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS14090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CKQ55_RS14100 PF00294 pfkB family carbohydrate kinase CKQ55_RS14110 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS14115 PF00691 OmpA family CKQ55_RS14115 PF13488 Glycine zipper CKQ55_RS14120 PF00384 Molybdopterin oxidoreductase CKQ55_RS14120 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS14120 PF18364 Molybdopterin oxidoreductase N-terminal domain CKQ55_RS14125 PF00583 Acetyltransferase (GNAT) family CKQ55_RS14130 PF03352 Methyladenine glycosylase CKQ55_RS14135 PF03797 Autotransporter beta-domain CKQ55_RS14145 PF07690 Major Facilitator Superfamily CKQ55_RS14150 PF00884 Sulfatase CKQ55_RS14150 PF08019 Phosphoethanolamine transferase EptA/EptB CKQ55_RS14170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS14175 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS14180 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS14180 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS14185 PF00005 ABC transporter CKQ55_RS14185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS14190 PF00005 ABC transporter CKQ55_RS14190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS14200 PF10609 NUBPL iron-transfer P-loop NTPase CKQ55_RS14205 PF00535 Glycosyl transferase family 2 CKQ55_RS14205 PF03170 Bacterial cellulose synthase subunit CKQ55_RS14205 PF07238 PilZ domain CKQ55_RS14210 PF03170 Bacterial cellulose synthase subunit CKQ55_RS14215 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CKQ55_RS14225 PF01270 Glycosyl hydrolases family 8 CKQ55_RS14230 PF13940 Toxin Ldr, type I toxin-antitoxin system CKQ55_RS14235 PF13940 Toxin Ldr, type I toxin-antitoxin system CKQ55_RS14240 PF13940 Toxin Ldr, type I toxin-antitoxin system CKQ55_RS14245 PF11658 Cellulose biosynthesis protein BcsG CKQ55_RS14250 PF11120 Cellulose biosynthesis protein BcsF CKQ55_RS14255 PF10995 Cellulose biosynthesis GIL CKQ55_RS14260 PF10945 Cellulose biosynthesis protein BcsR CKQ55_RS14265 PF06564 Cellulose biosynthesis protein BcsQ CKQ55_RS14270 PF00535 Glycosyl transferase family 2 CKQ55_RS14270 PF07238 PilZ domain CKQ55_RS14275 PF12323 Helix-turn-helix domain CKQ55_RS14275 PF07282 Putative transposase DNA-binding domain CKQ55_RS14275 PF01385 Probable transposase CKQ55_RS14280 PF03170 Bacterial cellulose synthase subunit CKQ55_RS14285 PF01270 Glycosyl hydrolases family 8 CKQ55_RS14290 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CKQ55_RS14295 PF17154 Gammaproteobacterial periplasmic sensor domain CKQ55_RS14295 PF00563 EAL domain CKQ55_RS14295 PF00672 HAMP domain CKQ55_RS14295 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS14300 PF00375 Sodium:dicarboxylate symporter family CKQ55_RS14305 PF05193 Peptidase M16 inactive domain CKQ55_RS14305 PF00675 Insulinase (Peptidase family M16) CKQ55_RS14310 PF00294 pfkB family carbohydrate kinase CKQ55_RS14320 PF05170 AsmA family CKQ55_RS14325 PF00083 Sugar (and other) transporter CKQ55_RS14325 PF07690 Major Facilitator Superfamily CKQ55_RS14330 PF03631 Virulence factor BrkB CKQ55_RS14335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS14335 PF03466 LysR substrate binding domain CKQ55_RS14345 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS14360 PF01204 Trehalase CKQ55_RS14365 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS14370 PF13417 Glutathione S-transferase, N-terminal domain CKQ55_RS14370 PF00043 Glutathione S-transferase, C-terminal domain CKQ55_RS14375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CKQ55_RS14375 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS14380 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CKQ55_RS14385 PF01569 PAP2 superfamily CKQ55_RS14390 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS14390 PF00672 HAMP domain CKQ55_RS14390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS14395 PF00072 Response regulator receiver domain CKQ55_RS14395 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS14400 PF01272 Transcription elongation factor, GreA/GreB, C-term CKQ55_RS14400 PF03449 Transcription elongation factor, N-terminal CKQ55_RS14405 PF09371 Tex-like protein N-terminal domain CKQ55_RS14405 PF16921 Tex protein YqgF-like domain CKQ55_RS14405 PF17674 HHH domain CKQ55_RS14405 PF00575 S1 RNA binding domain CKQ55_RS14410 PF04023 FeoA domain CKQ55_RS14415 PF07670 Nucleoside recognition CKQ55_RS14415 PF02421 Ferrous iron transport protein B CKQ55_RS14415 PF17910 FeoB cytosolic helical domain CKQ55_RS14415 PF07664 Ferrous iron transport protein B C terminus CKQ55_RS14420 PF09012 FeoC like transcriptional regulator CKQ55_RS14430 PF00561 alpha/beta hydrolase fold CKQ55_RS14435 PF00156 Phosphoribosyl transferase domain CKQ55_RS14440 PF01521 Iron-sulphur cluster biosynthesis CKQ55_RS14440 PF01106 NifU-like domain CKQ55_RS14445 PF02447 GntP family permease CKQ55_RS14450 PF01432 Peptidase family M3 CKQ55_RS14455 PF04445 Putative SAM-dependent methyltransferase CKQ55_RS14460 PF00854 POT family CKQ55_RS14465 PF00582 Universal stress protein family CKQ55_RS14470 PF10625 Universal stress protein B (UspB) CKQ55_RS14475 PF01384 Phosphate transporter family CKQ55_RS14485 PF00158 Sigma-54 interaction domain CKQ55_RS14485 PF00072 Response regulator receiver domain CKQ55_RS14485 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS14490 PF01979 Amidohydrolase family CKQ55_RS14495 PF00939 Sodium:sulfate symporter transmembrane region CKQ55_RS14500 PF03737 Aldolase/RraA CKQ55_RS14505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS14505 PF01842 ACT domain CKQ55_RS14505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CKQ55_RS14515 PF03448 MgtE intracellular N domain CKQ55_RS14515 PF01769 Divalent cation transporter CKQ55_RS14515 PF00571 CBS domain CKQ55_RS14525 PF08753 NikR C terminal nickel binding domain CKQ55_RS14525 PF01402 Ribbon-helix-helix protein, copG family CKQ55_RS14530 PF00005 ABC transporter CKQ55_RS14535 PF00005 ABC transporter CKQ55_RS14540 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS14545 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS14550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS14560 PF03466 LysR substrate binding domain CKQ55_RS14560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS14565 PF05870 Phenolic acid decarboxylase (PAD) CKQ55_RS14570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CKQ55_RS14575 PF00535 Glycosyl transferase family 2 CKQ55_RS14580 PF00551 Formyl transferase CKQ55_RS14580 PF01370 NAD dependent epimerase/dehydratase family CKQ55_RS14580 PF02911 Formyl transferase, C-terminal domain CKQ55_RS14585 PF01522 Polysaccharide deacetylase CKQ55_RS14590 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CKQ55_RS14595 PF00892 EamA-like transporter family CKQ55_RS14605 PF01648 4'-phosphopantetheinyl transferase superfamily CKQ55_RS14610 PF02801 Beta-ketoacyl synthase, C-terminal domain CKQ55_RS14610 PF00109 Beta-ketoacyl synthase, N-terminal domain CKQ55_RS14620 PF07977 FabA-like domain CKQ55_RS14625 PF02801 Beta-ketoacyl synthase, C-terminal domain CKQ55_RS14625 PF00109 Beta-ketoacyl synthase, N-terminal domain CKQ55_RS14650 PF00535 Glycosyl transferase family 2 CKQ55_RS14660 PF00501 AMP-binding enzyme CKQ55_RS14660 PF00975 Thioesterase domain CKQ55_RS14660 PF00668 Condensation domain CKQ55_RS14660 PF13193 AMP-binding enzyme C-terminal domain CKQ55_RS14660 PF00550 Phosphopantetheine attachment site CKQ55_RS14670 PF00550 Phosphopantetheine attachment site CKQ55_RS14675 PF00550 Phosphopantetheine attachment site CKQ55_RS14700 PF01594 AI-2E family transporter CKQ55_RS14705 PF07690 Major Facilitator Superfamily CKQ55_RS14710 PF08786 DcrB CKQ55_RS14715 PF02592 Putative vitamin uptake transporter CKQ55_RS14720 PF01206 Sulfurtransferase TusA CKQ55_RS14725 PF00403 Heavy-metal-associated domain CKQ55_RS14730 PF07947 YhhN family CKQ55_RS14735 PF10694 Protein of unknown function (DUF2500) CKQ55_RS14740 PF06611 Protein of unknown function (DUF1145) CKQ55_RS14750 PF00448 SRP54-type protein, GTPase domain CKQ55_RS14750 PF02881 SRP54-type protein, helical bundle domain CKQ55_RS14755 PF00005 ABC transporter CKQ55_RS14760 PF02687 FtsX-like permease family CKQ55_RS14760 PF18075 FtsX extracellular domain CKQ55_RS14765 PF04542 Sigma-70 region 2 CKQ55_RS14765 PF04545 Sigma-70, region 4 CKQ55_RS14770 PF00155 Aminotransferase class I and II CKQ55_RS14770 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS14775 PF00202 Aminotransferase class-III CKQ55_RS14785 PF13458 Periplasmic binding protein CKQ55_RS14790 PF12568 Acetyltransferase (GNAT) domain, PanZ CKQ55_RS14805 PF13458 Periplasmic binding protein CKQ55_RS14810 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS14815 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS14815 PF11862 Domain of unknown function (DUF3382) CKQ55_RS14820 PF00005 ABC transporter CKQ55_RS14820 PF12399 Branched-chain amino acid ATP-binding cassette transporter CKQ55_RS14825 PF00005 ABC transporter CKQ55_RS14830 PF08666 SAF domain CKQ55_RS14830 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CKQ55_RS14835 PF07690 Major Facilitator Superfamily CKQ55_RS14840 PF00701 Dihydrodipicolinate synthetase family CKQ55_RS14845 PF09339 IclR helix-turn-helix domain CKQ55_RS14845 PF01614 Bacterial transcriptional regulator CKQ55_RS14850 PF13416 Bacterial extracellular solute-binding protein CKQ55_RS14855 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS14860 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS14865 PF17912 MalK OB fold domain CKQ55_RS14865 PF00005 ABC transporter CKQ55_RS14870 PF03009 Glycerophosphoryl diester phosphodiesterase family CKQ55_RS14875 PF10956 Protein of unknown function (DUF2756) CKQ55_RS14885 PF00583 Acetyltransferase (GNAT) family CKQ55_RS14900 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS14900 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS14905 PF02678 Pirin CKQ55_RS14905 PF17954 Quercetinase C-terminal cupin domain CKQ55_RS14910 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS14910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CKQ55_RS14915 PF01202 Shikimate kinase CKQ55_RS14920 PF02447 GntP family permease CKQ55_RS14925 PF01118 Semialdehyde dehydrogenase, NAD binding domain CKQ55_RS14925 PF02774 Semialdehyde dehydrogenase, dimerisation domain CKQ55_RS14930 PF00128 Alpha amylase, catalytic domain CKQ55_RS14930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CKQ55_RS14930 PF02806 Alpha amylase, C-terminal all-beta domain CKQ55_RS14935 PF18390 Glycogen debranching enzyme C-terminal domain CKQ55_RS14935 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CKQ55_RS14935 PF00128 Alpha amylase, catalytic domain CKQ55_RS14940 PF00483 Nucleotidyl transferase CKQ55_RS14945 PF00534 Glycosyl transferases group 1 CKQ55_RS14945 PF08323 Starch synthase catalytic domain CKQ55_RS14950 PF00343 Carbohydrate phosphorylase CKQ55_RS14955 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CKQ55_RS14955 PF01266 FAD dependent oxidoreductase CKQ55_RS14960 PF00581 Rhodanese-like domain CKQ55_RS14965 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CKQ55_RS14965 PF01694 Rhomboid family CKQ55_RS14970 PF00455 DeoR C terminal sensor domain CKQ55_RS14970 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS14975 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS14975 PF17874 MalT-like TPR region CKQ55_RS14985 PF00343 Carbohydrate phosphorylase CKQ55_RS14990 PF02446 4-alpha-glucanotransferase CKQ55_RS14995 PF01293 Phosphoenolpyruvate carboxykinase CKQ55_RS15000 PF01430 Hsp33 protein CKQ55_RS15005 PF01479 S4 domain CKQ55_RS15010 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS15015 PF07095 Intracellular growth attenuator protein IgaA CKQ55_RS15020 PF00293 NUDIX domain CKQ55_RS15025 PF00912 Transglycosylase CKQ55_RS15025 PF00905 Penicillin binding protein transpeptidase domain CKQ55_RS15025 PF17092 Penicillin-binding protein OB-like domain CKQ55_RS15050 PF03958 Bacterial type II/III secretion system short domain CKQ55_RS15050 PF00263 Bacterial type II and III secretion system protein CKQ55_RS15060 PF01202 Shikimate kinase CKQ55_RS15065 PF01761 3-dehydroquinate synthase CKQ55_RS15070 PF05036 Sporulation related domain CKQ55_RS15075 PF02086 D12 class N6 adenine-specific DNA methyltransferase CKQ55_RS15080 PF00834 Ribulose-phosphate 3 epimerase family CKQ55_RS15085 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS15090 PF00579 tRNA synthetases class I (W and Y) CKQ55_RS15095 PF10414 Sirohaem synthase dimerisation region CKQ55_RS15095 PF14824 Sirohaem biosynthesis protein central CKQ55_RS15095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CKQ55_RS15100 PF01226 Formate/nitrite transporter CKQ55_RS15105 PF13806 Rieske-like [2Fe-2S] domain CKQ55_RS15110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CKQ55_RS15110 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS15110 PF18267 Rubredoxin NAD+ reductase C-terminal domain CKQ55_RS15110 PF04324 BFD-like [2Fe-2S] binding domain CKQ55_RS15110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CKQ55_RS15115 PF07969 Amidohydrolase family CKQ55_RS15120 PF07690 Major Facilitator Superfamily CKQ55_RS15125 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CKQ55_RS15130 PF10832 Protein of unknown function (DUF2559) CKQ55_RS15135 PF02661 Fic/DOC family CKQ55_RS15140 PF00117 Glutamine amidotransferase class-I CKQ55_RS15145 PF00202 Aminotransferase class-III CKQ55_RS15150 PF12805 FUSC-like inner membrane protein yccS CKQ55_RS15155 PF00027 Cyclic nucleotide-binding domain CKQ55_RS15155 PF13545 Crp-like helix-turn-helix domain CKQ55_RS15170 PF02566 OsmC-like protein CKQ55_RS15175 PF00485 Phosphoribulokinase / Uridine kinase family CKQ55_RS15180 PF06794 Uncharacterised protein family (UPF0270) CKQ55_RS15185 PF00561 alpha/beta hydrolase fold CKQ55_RS15195 PF14572 Phosphoribosyl synthetase-associated domain CKQ55_RS15195 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CKQ55_RS15200 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CKQ55_RS15205 PF00005 ABC transporter CKQ55_RS15205 PF12848 ABC transporter CKQ55_RS15215 PF02525 Flavodoxin-like fold CKQ55_RS15220 PF00999 Sodium/hydrogen exchanger family CKQ55_RS15220 PF02254 TrkA-N domain CKQ55_RS15225 PF09526 Probable metal-binding protein (DUF2387) CKQ55_RS15230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CKQ55_RS15235 PF04102 SlyX CKQ55_RS15240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CKQ55_RS15240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CKQ55_RS15245 PF13309 HTH domain CKQ55_RS15245 PF08348 YheO-like PAS domain CKQ55_RS15250 PF02635 DsrE/DsrF-like family CKQ55_RS15255 PF02635 DsrE/DsrF-like family CKQ55_RS15260 PF04077 DsrH like protein CKQ55_RS15265 PF00164 Ribosomal protein S12/S23 CKQ55_RS15270 PF00177 Ribosomal protein S7p/S5e CKQ55_RS15275 PF00679 Elongation factor G C-terminus CKQ55_RS15275 PF14492 Elongation Factor G, domain II CKQ55_RS15275 PF03764 Elongation factor G, domain IV CKQ55_RS15275 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS15275 PF03144 Elongation factor Tu domain 2 CKQ55_RS15280 PF03143 Elongation factor Tu C-terminal domain CKQ55_RS15280 PF03144 Elongation factor Tu domain 2 CKQ55_RS15280 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS15290 PF04324 BFD-like [2Fe-2S] binding domain CKQ55_RS15295 PF00210 Ferritin-like domain CKQ55_RS15300 PF01478 Type IV leader peptidase family CKQ55_RS15310 PF00338 Ribosomal protein S10p/S20e CKQ55_RS15315 PF00297 Ribosomal protein L3 CKQ55_RS15320 PF00573 Ribosomal protein L4/L1 family CKQ55_RS15325 PF00276 Ribosomal protein L23 CKQ55_RS15330 PF03947 Ribosomal Proteins L2, C-terminal domain CKQ55_RS15330 PF00181 Ribosomal Proteins L2, RNA binding domain CKQ55_RS15335 PF00203 Ribosomal protein S19 CKQ55_RS15340 PF00237 Ribosomal protein L22p/L17e CKQ55_RS15345 PF00189 Ribosomal protein S3, C-terminal domain CKQ55_RS15345 PF07650 KH domain CKQ55_RS15350 PF00252 Ribosomal protein L16p/L10e CKQ55_RS15355 PF00831 Ribosomal L29 protein CKQ55_RS15360 PF00366 Ribosomal protein S17 CKQ55_RS15365 PF00238 Ribosomal protein L14p/L23e CKQ55_RS15370 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CKQ55_RS15370 PF00467 KOW motif CKQ55_RS15375 PF00673 ribosomal L5P family C-terminus CKQ55_RS15375 PF00281 Ribosomal protein L5 CKQ55_RS15380 PF00253 Ribosomal protein S14p/S29e CKQ55_RS15385 PF00410 Ribosomal protein S8 CKQ55_RS15390 PF00347 Ribosomal protein L6 CKQ55_RS15395 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CKQ55_RS15400 PF00333 Ribosomal protein S5, N-terminal domain CKQ55_RS15400 PF03719 Ribosomal protein S5, C-terminal domain CKQ55_RS15405 PF00327 Ribosomal protein L30p/L7e CKQ55_RS15410 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CKQ55_RS15415 PF00344 SecY translocase CKQ55_RS15420 PF00444 Ribosomal protein L36 CKQ55_RS15425 PF00416 Ribosomal protein S13/S18 CKQ55_RS15430 PF00411 Ribosomal protein S11 CKQ55_RS15435 PF01479 S4 domain CKQ55_RS15435 PF00163 Ribosomal protein S4/S9 N-terminal domain CKQ55_RS15440 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CKQ55_RS15440 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CKQ55_RS15440 PF01000 RNA polymerase Rpb3/RpoA insert domain CKQ55_RS15445 PF01196 Ribosomal protein L17 CKQ55_RS15450 PF09350 Domain of unknown function (DUF1992) CKQ55_RS15455 PF13411 MerR HTH family regulatory protein CKQ55_RS15460 PF03889 Alternative ribosome-rescue factor A CKQ55_RS15465 PF01741 Large-conductance mechanosensitive channel, MscL CKQ55_RS15470 PF02254 TrkA-N domain CKQ55_RS15470 PF02080 TrkA-C domain CKQ55_RS15475 PF01189 16S rRNA methyltransferase RsmB/F CKQ55_RS15475 PF01029 NusB family CKQ55_RS15480 PF02911 Formyl transferase, C-terminal domain CKQ55_RS15480 PF00551 Formyl transferase CKQ55_RS15485 PF01327 Polypeptide deformylase CKQ55_RS15490 PF02481 DNA recombination-mediator protein A CKQ55_RS15490 PF17782 DprA winged helix domain CKQ55_RS15495 PF04361 Protein of unknown function (DUF494) CKQ55_RS15500 PF01396 Topoisomerase DNA binding C4 zinc finger CKQ55_RS15505 PF01300 Telomere recombination CKQ55_RS15510 PF01488 Shikimate / quinate 5-dehydrogenase CKQ55_RS15510 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CKQ55_RS15510 PF08501 Shikimate dehydrogenase substrate binding domain CKQ55_RS15515 PF07369 Protein of unknown function (DUF1488) CKQ55_RS15520 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS15565 PF00873 AcrB/AcrD/AcrF family CKQ55_RS15570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS15570 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS15575 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS15575 PF08361 MAATS-type transcriptional repressor, C-terminal region CKQ55_RS15580 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS15585 PF01207 Dihydrouridine synthase (Dus) CKQ55_RS15590 PF00194 Eukaryotic-type carbonic anhydrase CKQ55_RS15600 PF00474 Sodium:solute symporter family CKQ55_RS15605 PF06196 Protein of unknown function (DUF997) CKQ55_RS15610 PF02785 Biotin carboxylase C-terminal domain CKQ55_RS15610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CKQ55_RS15610 PF00289 Biotin carboxylase, N-terminal domain CKQ55_RS15615 PF00364 Biotin-requiring enzyme CKQ55_RS15630 PF01794 Ferric reductase like transmembrane component CKQ55_RS15635 PF00174 Oxidoreductase molybdopterin binding domain CKQ55_RS15640 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS15640 PF00107 Zinc-binding dehydrogenase CKQ55_RS15645 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS15645 PF17157 Gammaproteobacterial periplasmic sensor domain CKQ55_RS15645 PF00563 EAL domain CKQ55_RS15655 PF04085 rod shape-determining protein MreC CKQ55_RS15660 PF04093 rod shape-determining protein MreD CKQ55_RS15665 PF02545 Maf-like protein CKQ55_RS15670 PF00575 S1 RNA binding domain CKQ55_RS15670 PF10150 Ribonuclease E/G family CKQ55_RS15675 PF13116 Protein of unknown function CKQ55_RS15675 PF13502 AsmA-like C-terminal region CKQ55_RS15680 PF01523 Putative modulator of DNA gyrase CKQ55_RS15685 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS15685 PF00455 DeoR C terminal sensor domain CKQ55_RS15690 PF03466 LysR substrate binding domain CKQ55_RS15690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS15695 PF07869 Protein of unknown function (DUF1656) CKQ55_RS15700 PF13533 Biotin-lipoyl like CKQ55_RS15705 PF04632 Fusaric acid resistance protein family CKQ55_RS15710 PF01337 Barstar (barnase inhibitor) CKQ55_RS15715 PF07338 Protein of unknown function (DUF1471) CKQ55_RS15720 PF07338 Protein of unknown function (DUF1471) CKQ55_RS15725 PF01316 Arginine repressor, DNA binding domain CKQ55_RS15725 PF02863 Arginine repressor, C-terminal domain CKQ55_RS15730 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CKQ55_RS15730 PF00056 lactate/malate dehydrogenase, NAD binding domain CKQ55_RS15735 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS15735 PF07702 UTRA domain CKQ55_RS15745 PF00939 Sodium:sulfate symporter transmembrane region CKQ55_RS15750 PF05681 Fumarate hydratase (Fumerase) CKQ55_RS15755 PF05683 Fumarase C-terminus CKQ55_RS15760 PF04277 Oxaloacetate decarboxylase, gamma chain CKQ55_RS15765 PF00364 Biotin-requiring enzyme CKQ55_RS15765 PF00682 HMGL-like CKQ55_RS15765 PF02436 Conserved carboxylase domain CKQ55_RS15770 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CKQ55_RS15775 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CKQ55_RS15780 PF13180 PDZ domain CKQ55_RS15785 PF00595 PDZ domain CKQ55_RS15785 PF13180 PDZ domain CKQ55_RS15790 PF06295 Protein of unknown function (DUF1043) CKQ55_RS15795 PF03969 AFG1-like ATPase CKQ55_RS15800 PF00572 Ribosomal protein L13 CKQ55_RS15805 PF00380 Ribosomal protein S9/S16 CKQ55_RS15815 PF02798 Glutathione S-transferase, N-terminal domain CKQ55_RS15815 PF00043 Glutathione S-transferase, C-terminal domain CKQ55_RS15820 PF04386 Stringent starvation protein B CKQ55_RS15825 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS15825 PF07729 FCD domain CKQ55_RS15830 PF00701 Dihydrodipicolinate synthetase family CKQ55_RS15835 PF07690 Major Facilitator Superfamily CKQ55_RS15840 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CKQ55_RS15845 PF00480 ROK family CKQ55_RS15850 PF04074 YhcH/YjgK/YiaL CKQ55_RS15855 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS15855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CKQ55_RS15860 PF00310 Glutamine amidotransferases class-II CKQ55_RS15860 PF01493 GXGXG motif CKQ55_RS15860 PF04898 Glutamate synthase central domain CKQ55_RS15860 PF01645 Conserved region in glutamate synthase CKQ55_RS15875 PF04055 Radical SAM superfamily CKQ55_RS15875 PF16199 Radical_SAM C-terminal domain CKQ55_RS15880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS15880 PF00989 PAS fold CKQ55_RS15880 PF01627 Hpt domain CKQ55_RS15880 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS15880 PF00072 Response regulator receiver domain CKQ55_RS15880 PF18415 Histidine kinase receptor ArcB trans-membrane domain CKQ55_RS15890 PF00912 Transglycosylase CKQ55_RS15895 PF00381 PTS HPr component phosphorylation site CKQ55_RS15900 PF03668 P-loop ATPase protein family CKQ55_RS15905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS15910 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CKQ55_RS15915 PF04552 Sigma-54, DNA binding domain CKQ55_RS15915 PF00309 Sigma-54 factor, Activator interacting domain (AID) CKQ55_RS15915 PF04963 Sigma-54 factor, core binding domain CKQ55_RS15920 PF00005 ABC transporter CKQ55_RS15920 PF12399 Branched-chain amino acid ATP-binding cassette transporter CKQ55_RS15925 PF03968 OstA-like protein CKQ55_RS15930 PF06835 Lipopolysaccharide-assembly, LptC-related CKQ55_RS15940 PF00571 CBS domain CKQ55_RS15940 PF01380 SIS domain CKQ55_RS15945 PF01699 Sodium/calcium exchanger protein CKQ55_RS15950 PF00005 ABC transporter CKQ55_RS15955 PF02405 Permease MlaE CKQ55_RS15960 PF02470 MlaD protein CKQ55_RS15965 PF05494 MlaC protein CKQ55_RS15970 PF13466 STAS domain CKQ55_RS15975 PF01722 BolA-like protein CKQ55_RS15980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CKQ55_RS15985 PF13693 Winged helix-turn-helix DNA-binding CKQ55_RS15990 PF00348 Polyprenyl synthetase CKQ55_RS15995 PF00829 Ribosomal prokaryotic L21 protein CKQ55_RS16000 PF01016 Ribosomal L27 protein CKQ55_RS16005 PF00892 EamA-like transporter family CKQ55_RS16010 PF01926 50S ribosome-binding GTPase CKQ55_RS16010 PF01018 GTP1/OBG CKQ55_RS16015 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CKQ55_RS16020 PF01272 Transcription elongation factor, GreA/GreB, C-term CKQ55_RS16020 PF03449 Transcription elongation factor, N-terminal CKQ55_RS16025 PF01985 CRS1 / YhbY (CRM) domain CKQ55_RS16035 PF01728 FtsJ-like methyltransferase CKQ55_RS16040 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS16040 PF17862 AAA+ lid domain CKQ55_RS16040 PF06480 FtsH Extracellular CKQ55_RS16040 PF01434 Peptidase family M41 CKQ55_RS16045 PF00809 Pterin binding enzyme CKQ55_RS16050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CKQ55_RS16050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CKQ55_RS16050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CKQ55_RS16050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CKQ55_RS16055 PF03840 Preprotein translocase SecG subunit CKQ55_RS16065 PF00764 Arginosuccinate synthase CKQ55_RS16075 PF17384 RimP C-terminal SH3 domain CKQ55_RS16075 PF02576 RimP N-terminal domain CKQ55_RS16080 PF08529 NusA N-terminal domain CKQ55_RS16080 PF00575 S1 RNA binding domain CKQ55_RS16080 PF13184 NusA-like KH domain CKQ55_RS16085 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS16085 PF11987 Translation-initiation factor 2 CKQ55_RS16085 PF04760 Translation initiation factor IF-2, N-terminal region CKQ55_RS16085 PF08364 Bacterial translation initiation factor IF-2 associated region CKQ55_RS16090 PF02033 Ribosome-binding factor A CKQ55_RS16095 PF01509 TruB family pseudouridylate synthase (N terminal domain) CKQ55_RS16095 PF16198 tRNA pseudouridylate synthase B C-terminal domain CKQ55_RS16095 PF09157 Pseudouridine synthase II TruB, C-terminal CKQ55_RS16100 PF00312 Ribosomal protein S15 CKQ55_RS16110 PF00575 S1 RNA binding domain CKQ55_RS16110 PF03725 3' exoribonuclease family, domain 2 CKQ55_RS16110 PF00013 KH domain CKQ55_RS16110 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CKQ55_RS16110 PF01138 3' exoribonuclease family, domain 1 CKQ55_RS16115 PF07719 Tetratricopeptide repeat CKQ55_RS16115 PF13181 Tetratricopeptide repeat CKQ55_RS16125 PF03880 DbpA RNA binding domain CKQ55_RS16125 PF00270 DEAD/DEAH box helicase CKQ55_RS16125 PF00271 Helicase conserved C-terminal domain CKQ55_RS16125 PF12343 Cold shock protein DEAD box A CKQ55_RS16130 PF03222 Tryptophan/tyrosine permease family CKQ55_RS16135 PF00296 Luciferase-like monooxygenase CKQ55_RS16140 PF01136 Peptidase family U32 CKQ55_RS16145 PF01136 Peptidase family U32 CKQ55_RS16150 PF02036 SCP-2 sterol transfer family CKQ55_RS16155 PF13508 Acetyltransferase (GNAT) domain CKQ55_RS16160 PF01541 GIY-YIG catalytic domain CKQ55_RS16170 PF01965 DJ-1/PfpI family CKQ55_RS16175 PF13460 NAD(P)H-binding CKQ55_RS16180 PF03773 Predicted permease CKQ55_RS16185 PF04972 BON domain CKQ55_RS16190 PF13580 SIS domain CKQ55_RS16195 PF02021 Uncharacterised protein family UPF0102 CKQ55_RS16200 PF04348 LppC putative lipoprotein CKQ55_RS16205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CKQ55_RS16210 PF13784 Fic/DOC family N-terminal CKQ55_RS16210 PF02661 Fic/DOC family CKQ55_RS16215 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS16220 PF00107 Zinc-binding dehydrogenase CKQ55_RS16220 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS16225 PF03611 PTS system sugar-specific permease component CKQ55_RS16230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS16235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS16240 PF08013 Tagatose 6 phosphate kinase CKQ55_RS16245 PF00381 PTS HPr component phosphorylation site CKQ55_RS16245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS16250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS16250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS16255 PF00294 pfkB family carbohydrate kinase CKQ55_RS16260 PF01116 Fructose-bisphosphate aldolase class-II CKQ55_RS16265 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS16265 PF00455 DeoR C terminal sensor domain CKQ55_RS16270 PF00294 pfkB family carbohydrate kinase CKQ55_RS16275 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CKQ55_RS16275 PF08666 SAF domain CKQ55_RS16285 PF07690 Major Facilitator Superfamily CKQ55_RS16290 PF03328 HpcH/HpaI aldolase/citrate lyase family CKQ55_RS16295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CKQ55_RS16295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CKQ55_RS16300 PF02595 Glycerate kinase family CKQ55_RS16315 PF02678 Pirin CKQ55_RS16315 PF17954 Quercetinase C-terminal cupin domain CKQ55_RS16320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS16320 PF03466 LysR substrate binding domain CKQ55_RS16325 PF05656 Protein of unknown function (DUF805) CKQ55_RS16330 PF13409 Glutathione S-transferase, N-terminal domain CKQ55_RS16335 PF07681 DoxX CKQ55_RS16340 PF13997 YqjK-like protein CKQ55_RS16345 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CKQ55_RS16350 PF05957 Bacterial protein of unknown function (DUF883) CKQ55_RS16355 PF06476 Protein of unknown function (DUF1090) CKQ55_RS16360 PF13721 SecD export protein N-terminal TM region CKQ55_RS16365 PF09335 SNARE associated Golgi protein CKQ55_RS16370 PF07729 FCD domain CKQ55_RS16370 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS16375 PF07690 Major Facilitator Superfamily CKQ55_RS16380 PF02614 Glucuronate isomerase CKQ55_RS16385 PF08666 SAF domain CKQ55_RS16385 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CKQ55_RS16390 PF10688 Bacterial inner membrane protein CKQ55_RS16395 PF00375 Sodium:dicarboxylate symporter family CKQ55_RS16400 PF03741 Integral membrane protein TerC family CKQ55_RS16405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS16410 PF01863 Protein of unknown function DUF45 CKQ55_RS16415 PF04616 Glycosyl hydrolases family 43 CKQ55_RS16415 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CKQ55_RS16430 PF05175 Methyltransferase small domain CKQ55_RS16435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS16435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CKQ55_RS16440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS16440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS16445 PF04198 Putative sugar-binding domain CKQ55_RS16450 PF00005 ABC transporter CKQ55_RS16455 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS16460 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS16465 PF13407 Periplasmic binding protein domain CKQ55_RS16470 PF01791 DeoC/LacD family aldolase CKQ55_RS16475 PF03992 Antibiotic biosynthesis monooxygenase CKQ55_RS16500 PF01204 Trehalase CKQ55_RS16510 PF13520 Amino acid permease CKQ55_RS16515 PF13520 Amino acid permease CKQ55_RS16520 PF04074 YhcH/YjgK/YiaL CKQ55_RS16525 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CKQ55_RS16525 PF16353 Domain of unknown function(DUF4981) CKQ55_RS16525 PF02929 Beta galactosidase small chain CKQ55_RS16525 PF00703 Glycosyl hydrolases family 2 CKQ55_RS16525 PF02837 Glycosyl hydrolases family 2, sugar binding domain CKQ55_RS16545 PF02929 Beta galactosidase small chain CKQ55_RS16545 PF16353 Domain of unknown function(DUF4981) CKQ55_RS16545 PF00703 Glycosyl hydrolases family 2 CKQ55_RS16545 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CKQ55_RS16545 PF02837 Glycosyl hydrolases family 2, sugar binding domain CKQ55_RS16550 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS16555 PF01588 Putative tRNA binding domain CKQ55_RS16560 PF00202 Aminotransferase class-III CKQ55_RS16570 PF03551 Transcriptional regulator PadR-like family CKQ55_RS16575 PF04954 Siderophore-interacting protein CKQ55_RS16575 PF08021 Siderophore-interacting FAD-binding domain CKQ55_RS16585 PF02734 DAK2 domain CKQ55_RS16585 PF02733 Dak1 domain CKQ55_RS16590 PF00381 PTS HPr component phosphorylation site CKQ55_RS16590 PF00391 PEP-utilising enzyme, mobile domain CKQ55_RS16590 PF05524 PEP-utilising enzyme, N-terminal CKQ55_RS16590 PF03610 PTS system fructose IIA component CKQ55_RS16595 PF02734 DAK2 domain CKQ55_RS16600 PF02733 Dak1 domain CKQ55_RS16610 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS16615 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS16615 PF00989 PAS fold CKQ55_RS16615 PF00158 Sigma-54 interaction domain CKQ55_RS16620 PF08986 Domain of unknown function (DUF1889) CKQ55_RS16630 PF03167 Uracil DNA glycosylase superfamily CKQ55_RS16635 PF08361 MAATS-type transcriptional repressor, C-terminal region CKQ55_RS16635 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS16640 PF03979 Sigma-70 factor, region 1.1 CKQ55_RS16640 PF00140 Sigma-70 factor, region 1.2 CKQ55_RS16640 PF04546 Sigma-70, non-essential region CKQ55_RS16640 PF04539 Sigma-70 region 3 CKQ55_RS16640 PF04542 Sigma-70 region 2 CKQ55_RS16640 PF04545 Sigma-70, region 4 CKQ55_RS16645 PF08275 DNA primase catalytic core, N-terminal domain CKQ55_RS16645 PF01807 CHC2 zinc finger CKQ55_RS16645 PF10410 DnaB-helicase binding domain of primase CKQ55_RS16645 PF08278 DNA primase DnaG DnaB-binding CKQ55_RS16650 PF01165 Ribosomal protein S21 CKQ55_RS16655 PF00814 Glycoprotease family CKQ55_RS16665 PF02492 CobW/HypB/UreG, nucleotide-binding domain CKQ55_RS16670 PF01730 UreF CKQ55_RS16675 PF05194 UreE urease accessory protein, C-terminal domain CKQ55_RS16675 PF02814 UreE urease accessory protein, N-terminal domain CKQ55_RS16680 PF01979 Amidohydrolase family CKQ55_RS16680 PF00449 Urease alpha-subunit, N-terminal domain CKQ55_RS16685 PF00699 Urease beta subunit CKQ55_RS16690 PF00547 Urease, gamma subunit CKQ55_RS16695 PF01774 UreD urease accessory protein CKQ55_RS16700 PF02660 Glycerol-3-phosphate acyltransferase CKQ55_RS16705 PF02152 Dihydroneopterin aldolase CKQ55_RS16710 PF02673 Bacitracin resistance protein BacA CKQ55_RS16715 PF01743 Poly A polymerase head domain CKQ55_RS16715 PF12627 Probable RNA and SrmB- binding site of polymerase A CKQ55_RS16715 PF01966 HD domain CKQ55_RS16720 PF08239 Bacterial SH3 domain CKQ55_RS16725 PF01928 CYTH domain CKQ55_RS16730 PF03710 Glutamate-ammonia ligase adenylyltransferase CKQ55_RS16730 PF08335 GlnD PII-uridylyltransferase CKQ55_RS16735 PF00294 pfkB family carbohydrate kinase CKQ55_RS16735 PF01467 Cytidylyltransferase-like CKQ55_RS16740 PF08971 Glycogen synthesis protein CKQ55_RS16745 PF04380 Membrane fusogenic activity CKQ55_RS16750 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CKQ55_RS16760 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS16760 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS16765 PF00577 Outer membrane usher protein CKQ55_RS16765 PF13954 PapC N-terminal domain CKQ55_RS16765 PF13953 PapC C-terminal domain CKQ55_RS16770 PF00419 Fimbrial protein CKQ55_RS16775 PF02535 ZIP Zinc transporter CKQ55_RS16780 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CKQ55_RS16785 PF03738 Glutathionylspermidine synthase preATP-grasp CKQ55_RS16790 PF06693 Protein of unknown function (DUF1190) CKQ55_RS16795 PF02321 Outer membrane efflux protein CKQ55_RS16800 PF00293 NUDIX domain CKQ55_RS16805 PF06853 Protein of unknown function (DUF1249) CKQ55_RS16810 PF00149 Calcineurin-like phosphoesterase CKQ55_RS16820 PF01751 Toprim domain CKQ55_RS16820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS16820 PF00986 DNA gyrase B subunit, carboxyl terminus CKQ55_RS16820 PF00204 DNA gyrase B CKQ55_RS16825 PF03992 Antibiotic biosynthesis monooxygenase CKQ55_RS16830 PF02525 Flavodoxin-like fold CKQ55_RS16835 PF08521 Two-component sensor kinase N-terminal CKQ55_RS16835 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS16835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS16840 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS16840 PF00072 Response regulator receiver domain CKQ55_RS16845 PF04076 Bacterial OB fold (BOF) protein CKQ55_RS16850 PF06445 GyrI-like small molecule binding domain CKQ55_RS16855 PF00521 DNA gyrase/topoisomerase IV, subunit A CKQ55_RS16855 PF03989 DNA gyrase C-terminal domain, beta-propeller CKQ55_RS16860 PF01553 Acyltransferase CKQ55_RS16865 PF00394 Multicopper oxidase CKQ55_RS16865 PF07731 Multicopper oxidase CKQ55_RS16865 PF07732 Multicopper oxidase CKQ55_RS16870 PF11842 Domain of unknown function (DUF3362) CKQ55_RS16870 PF08497 Radical SAM N-terminal CKQ55_RS16870 PF04055 Radical SAM superfamily CKQ55_RS16880 PF00248 Aldo/keto reductase family CKQ55_RS16885 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS16895 PF12833 Helix-turn-helix domain CKQ55_RS16895 PF06719 AraC-type transcriptional regulator N-terminus CKQ55_RS16900 PF09335 SNARE associated Golgi protein CKQ55_RS16905 PF01053 Cys/Met metabolism PLP-dependent enzyme CKQ55_RS16915 PF01618 MotA/TolQ/ExbB proton channel family CKQ55_RS16920 PF02472 Biopolymer transport protein ExbD/TolR CKQ55_RS16925 PF03350 Uncharacterized protein family, UPF0114 CKQ55_RS16930 PF01738 Dienelactone hydrolase family CKQ55_RS16935 PF11115 Protein of unknown function (DUF2623) CKQ55_RS16940 PF02798 Glutathione S-transferase, N-terminal domain CKQ55_RS16950 PF03738 Glutathionylspermidine synthase preATP-grasp CKQ55_RS16950 PF05257 CHAP domain CKQ55_RS16955 PF00155 Aminotransferase class I and II CKQ55_RS16965 PF13350 Tyrosine phosphatase family CKQ55_RS16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS16980 PF03466 LysR substrate binding domain CKQ55_RS16985 PF01053 Cys/Met metabolism PLP-dependent enzyme CKQ55_RS16990 PF00571 CBS domain CKQ55_RS16990 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS17000 PF00939 Sodium:sulfate symporter transmembrane region CKQ55_RS17030 PF13614 AAA domain CKQ55_RS17040 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS17040 PF00239 Resolvase, N terminal domain CKQ55_RS17055 PF04474 Protein of unknown function (DUF554) CKQ55_RS17060 PF01276 Orn/Lys/Arg decarboxylase, major domain CKQ55_RS17060 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CKQ55_RS17060 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CKQ55_RS17065 PF03825 Nucleoside H+ symporter CKQ55_RS17070 PF01464 Transglycosylase SLT domain CKQ55_RS17070 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CKQ55_RS17075 PF04362 Bacterial Fe(2+) trafficking CKQ55_RS17080 PF14815 NUDIX domain CKQ55_RS17080 PF00730 HhH-GPD superfamily base excision DNA repair protein CKQ55_RS17080 PF00633 Helix-hairpin-helix motif CKQ55_RS17080 PF10576 Iron-sulfur binding domain of endonuclease III CKQ55_RS17085 PF02390 Putative methyltransferase CKQ55_RS17090 PF04320 Protein with unknown function (DUF469) CKQ55_RS17095 PF11101 Protein of unknown function (DUF2884) CKQ55_RS17100 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CKQ55_RS17105 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CKQ55_RS17110 PF03480 Bacterial extracellular solute-binding protein, family 7 CKQ55_RS17115 PF06969 HemN C-terminal domain CKQ55_RS17115 PF04055 Radical SAM superfamily CKQ55_RS17120 PF01725 Ham1 family CKQ55_RS17125 PF02594 Uncharacterised ACR, YggU family COG1872 CKQ55_RS17130 PF02325 YGGT family CKQ55_RS17135 PF01168 Alanine racemase, N-terminal domain CKQ55_RS17140 PF00437 Type II/IV secretion system protein CKQ55_RS17150 PF03652 Holliday junction resolvase CKQ55_RS17155 PF02622 Uncharacterized ACR, COG1678 CKQ55_RS17160 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CKQ55_RS17160 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CKQ55_RS17165 PF04452 RNA methyltransferase CKQ55_RS17170 PF04231 Endonuclease I CKQ55_RS17175 PF17283 SprT-like zinc ribbon domain CKQ55_RS17175 PF10263 SprT-like family CKQ55_RS17180 PF00083 Sugar (and other) transporter CKQ55_RS17185 PF00438 S-adenosylmethionine synthetase, N-terminal domain CKQ55_RS17185 PF02772 S-adenosylmethionine synthetase, central domain CKQ55_RS17185 PF02773 S-adenosylmethionine synthetase, C-terminal domain CKQ55_RS17200 PF17810 Arginine decarboxylase helical bundle domain CKQ55_RS17200 PF17944 Arginine decarboxylase C-terminal helical extension CKQ55_RS17200 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CKQ55_RS17205 PF00491 Arginase family CKQ55_RS17210 PF01435 Peptidase family M48 CKQ55_RS17215 PF00456 Transketolase, thiamine diphosphate binding domain CKQ55_RS17215 PF02780 Transketolase, C-terminal domain CKQ55_RS17215 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS17220 PF00005 ABC transporter CKQ55_RS17225 PF00005 ABC transporter CKQ55_RS17245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CKQ55_RS17245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CKQ55_RS17250 PF00162 Phosphoglycerate kinase CKQ55_RS17255 PF01116 Fructose-bisphosphate aldolase class-II CKQ55_RS17260 PF00924 Mechanosensitive ion channel CKQ55_RS17260 PF05552 Conserved TM helix CKQ55_RS17265 PF01810 LysE type translocator CKQ55_RS17270 PF04402 Protein of unknown function (DUF541) CKQ55_RS17275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS17275 PF03466 LysR substrate binding domain CKQ55_RS17280 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CKQ55_RS17280 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CKQ55_RS17285 PF00378 Enoyl-CoA hydratase/isomerase CKQ55_RS17295 PF01642 Methylmalonyl-CoA mutase CKQ55_RS17295 PF02310 B12 binding domain CKQ55_RS17305 PF03466 LysR substrate binding domain CKQ55_RS17305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS17310 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CKQ55_RS17315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CKQ55_RS17315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS17315 PF01842 ACT domain CKQ55_RS17320 PF01812 5-formyltetrahydrofolate cyclo-ligase family CKQ55_RS17330 PF05164 Cell division protein ZapA CKQ55_RS17335 PF03695 Uncharacterised protein family (UPF0149) CKQ55_RS17340 PF05195 Aminopeptidase P, N-terminal domain CKQ55_RS17340 PF00557 Metallopeptidase family M24 CKQ55_RS17345 PF01494 FAD binding domain CKQ55_RS17350 PF01494 FAD binding domain CKQ55_RS17355 PF01571 Aminomethyltransferase folate-binding domain CKQ55_RS17355 PF08669 Glycine cleavage T-protein C-terminal barrel domain CKQ55_RS17360 PF01597 Glycine cleavage H-protein CKQ55_RS17365 PF02347 Glycine cleavage system P-protein CKQ55_RS17375 PF00578 AhpC/TSA family CKQ55_RS17380 PF00232 Glycosyl hydrolase family 1 CKQ55_RS17385 PF01418 Helix-turn-helix domain, rpiR family CKQ55_RS17385 PF01380 SIS domain CKQ55_RS17390 PF04266 ASCH domain CKQ55_RS17395 PF03006 Haemolysin-III related CKQ55_RS17400 PF07071 KDGP aldolase CKQ55_RS17405 PF03841 L-seryl-tRNA selenium transferase CKQ55_RS17410 PF03613 PTS system mannose/fructose/sorbose family IID component CKQ55_RS17415 PF03609 PTS system sorbose-specific iic component CKQ55_RS17420 PF03610 PTS system fructose IIA component CKQ55_RS17420 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS17430 PF00874 PRD domain CKQ55_RS17430 PF00158 Sigma-54 interaction domain CKQ55_RS17435 PF01571 Aminomethyltransferase folate-binding domain CKQ55_RS17440 PF03937 Flavinator of succinate dehydrogenase CKQ55_RS17445 PF07254 Membrane-bound toxin component of toxin-antitoxin system CKQ55_RS17450 PF00258 Flavodoxin CKQ55_RS17455 PF02899 Phage integrase, N-terminal SAM-like domain CKQ55_RS17455 PF00589 Phage integrase family CKQ55_RS17460 PF10411 Disulfide bond isomerase protein N-terminus CKQ55_RS17460 PF13098 Thioredoxin-like domain CKQ55_RS17465 PF17768 RecJ OB domain CKQ55_RS17465 PF02272 DHHA1 domain CKQ55_RS17465 PF01368 DHH family CKQ55_RS17475 PF01336 OB-fold nucleic acid binding domain CKQ55_RS17475 PF00152 tRNA synthetases class II (D, K and N) CKQ55_RS17480 PF00293 NUDIX domain CKQ55_RS17485 PF04474 Protein of unknown function (DUF554) CKQ55_RS17490 PF02441 Flavoprotein CKQ55_RS17495 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CKQ55_RS17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS17500 PF03466 LysR substrate binding domain CKQ55_RS17505 PF01551 Peptidase family M23 CKQ55_RS17505 PF01476 LysM domain CKQ55_RS17515 PF00589 Phage integrase family CKQ55_RS17515 PF14659 Phage integrase, N-terminal SAM-like domain CKQ55_RS17515 PF13356 Arm DNA-binding domain CKQ55_RS17530 PF12833 Helix-turn-helix domain CKQ55_RS17540 PF13460 NAD(P)H-binding CKQ55_RS17540 PF11066 Protein of unknown function (DUF2867) CKQ55_RS17545 PF03466 LysR substrate binding domain CKQ55_RS17545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS17550 PF00248 Aldo/keto reductase family CKQ55_RS17555 PF00248 Aldo/keto reductase family CKQ55_RS17565 PF10137 Predicted nucleotide-binding protein containing TIR-like domain CKQ55_RS17595 PF00672 HAMP domain CKQ55_RS17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS17595 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS17600 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS17600 PF00072 Response regulator receiver domain CKQ55_RS17605 PF00248 Aldo/keto reductase family CKQ55_RS17610 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CKQ55_RS17615 PF00881 Nitroreductase family CKQ55_RS17620 PF07690 Major Facilitator Superfamily CKQ55_RS17630 PF01022 Bacterial regulatory protein, arsR family CKQ55_RS17635 PF02040 Arsenical pump membrane protein CKQ55_RS17640 PF03960 ArsC family CKQ55_RS17645 PF07690 Major Facilitator Superfamily CKQ55_RS17655 PF07690 Major Facilitator Superfamily CKQ55_RS17660 PF05651 Putative sugar diacid recognition CKQ55_RS17660 PF17853 GGDEF-like domain CKQ55_RS17660 PF13556 PucR C-terminal helix-turn-helix domain CKQ55_RS17665 PF02595 Glycerate kinase family CKQ55_RS17675 PF08450 SMP-30/Gluconolactonase/LRE-like region CKQ55_RS17680 PF07690 Major Facilitator Superfamily CKQ55_RS17685 PF00108 Thiolase, N-terminal domain CKQ55_RS17685 PF02803 Thiolase, C-terminal domain CKQ55_RS17695 PF01144 Coenzyme A transferase CKQ55_RS17700 PF00501 AMP-binding enzyme CKQ55_RS17700 PF13193 AMP-binding enzyme C-terminal domain CKQ55_RS17710 PF07690 Major Facilitator Superfamily CKQ55_RS17715 PF00294 pfkB family carbohydrate kinase CKQ55_RS17720 PF00834 Ribulose-phosphate 3 epimerase family CKQ55_RS17725 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS17725 PF00455 DeoR C terminal sensor domain CKQ55_RS17730 PF01791 DeoC/LacD family aldolase CKQ55_RS17735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS17735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS17740 PF00455 DeoR C terminal sensor domain CKQ55_RS17740 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS17755 PF00854 POT family CKQ55_RS17760 PF00106 short chain dehydrogenase CKQ55_RS17765 PF17874 MalT-like TPR region CKQ55_RS17765 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS17770 PF02321 Outer membrane efflux protein CKQ55_RS17775 PF04632 Fusaric acid resistance protein family CKQ55_RS17780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS17780 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS17785 PF17090 Uncharacterised protein family CKQ55_RS17790 PF06902 Divergent 4Fe-4S mono-cluster CKQ55_RS17795 PF14542 GCN5-related N-acetyl-transferase CKQ55_RS17800 PF01810 LysE type translocator CKQ55_RS17805 PF01037 Lrp/AsnC ligand binding domain CKQ55_RS17810 PF01047 MarR family CKQ55_RS17815 PF00892 EamA-like transporter family CKQ55_RS17835 PF00419 Fimbrial protein CKQ55_RS17840 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS17840 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS17845 PF13953 PapC C-terminal domain CKQ55_RS17845 PF13954 PapC N-terminal domain CKQ55_RS17845 PF00577 Outer membrane usher protein CKQ55_RS17850 PF00419 Fimbrial protein CKQ55_RS17875 PF00248 Aldo/keto reductase family CKQ55_RS17880 PF03222 Tryptophan/tyrosine permease family CKQ55_RS17890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS17890 PF03466 LysR substrate binding domain CKQ55_RS17895 PF00108 Thiolase, N-terminal domain CKQ55_RS17895 PF02803 Thiolase, C-terminal domain CKQ55_RS17900 PF06178 Oligogalacturonate-specific porin protein (KdgM) CKQ55_RS17905 PF14583 Oligogalacturonate lyase CKQ55_RS17915 PF00083 Sugar (and other) transporter CKQ55_RS17920 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CKQ55_RS17920 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS17925 PF01306 LacY proton/sugar symporter CKQ55_RS17930 PF08244 Glycosyl hydrolases family 32 C terminal CKQ55_RS17930 PF00251 Glycosyl hydrolases family 32 N-terminal domain CKQ55_RS17940 PF14583 Oligogalacturonate lyase CKQ55_RS17950 PF03459 TOBE domain CKQ55_RS17950 PF17912 MalK OB fold domain CKQ55_RS17950 PF00005 ABC transporter CKQ55_RS17955 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS17960 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS17970 PF01177 Asp/Glu/Hydantoin racemase CKQ55_RS17990 PF13953 PapC C-terminal domain CKQ55_RS17990 PF13954 PapC N-terminal domain CKQ55_RS17990 PF00577 Outer membrane usher protein CKQ55_RS17995 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS18000 PF03466 LysR substrate binding domain CKQ55_RS18000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS18005 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CKQ55_RS18005 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CKQ55_RS18010 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS18015 PF02378 Phosphotransferase system, EIIC CKQ55_RS18020 PF00232 Glycosyl hydrolase family 1 CKQ55_RS18025 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS18025 PF07729 FCD domain CKQ55_RS18035 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS18050 PF01553 Acyltransferase CKQ55_RS18050 PF00501 AMP-binding enzyme CKQ55_RS18055 PF07690 Major Facilitator Superfamily CKQ55_RS18060 PF00248 Aldo/keto reductase family CKQ55_RS18065 PF06004 Bacterial protein of unknown function (DUF903) CKQ55_RS18070 PF03741 Integral membrane protein TerC family CKQ55_RS18090 PF00293 NUDIX domain CKQ55_RS18095 PF01590 GAF domain CKQ55_RS18095 PF05524 PEP-utilising enzyme, N-terminal CKQ55_RS18095 PF00391 PEP-utilising enzyme, mobile domain CKQ55_RS18095 PF02896 PEP-utilising enzyme, TIM barrel domain CKQ55_RS18100 PF01790 Prolipoprotein diacylglyceryl transferase CKQ55_RS18105 PF00303 Thymidylate synthase CKQ55_RS18115 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS18120 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS18125 PF10713 Protein of unknown function (DUF2509) CKQ55_RS18130 PF07963 Prokaryotic N-terminal methylation motif CKQ55_RS18130 PF12528 Type II secretion prepilin peptidase dependent protein C CKQ55_RS18135 PF17946 RecC C-terminal domain CKQ55_RS18140 PF00675 Insulinase (Peptidase family M16) CKQ55_RS18140 PF05193 Peptidase M16 inactive domain CKQ55_RS18140 PF16187 Middle or third domain of peptidase_M16 CKQ55_RS18145 PF13361 UvrD-like helicase C-terminal domain CKQ55_RS18145 PF00580 UvrD/REP helicase N-terminal domain CKQ55_RS18145 PF12705 PD-(D/E)XK nuclease superfamily CKQ55_RS18150 PF13538 UvrD-like helicase C-terminal domain CKQ55_RS18155 PF00583 Acetyltransferase (GNAT) family CKQ55_RS18155 PF00696 Amino acid kinase family CKQ55_RS18160 PF11741 AMIN domain CKQ55_RS18160 PF01520 N-acetylmuramoyl-L-alanine amidase CKQ55_RS18165 PF00155 Aminotransferase class I and II CKQ55_RS18170 PF00288 GHMP kinases N terminal domain CKQ55_RS18175 PF00871 Acetokinase family CKQ55_RS18180 PF10662 Ethanolamine utilisation - propanediol utilisation CKQ55_RS18185 PF00936 BMC domain CKQ55_RS18195 PF13237 4Fe-4S dicluster domain CKQ55_RS18195 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CKQ55_RS18195 PF13375 RnfC Barrel sandwich hybrid domain CKQ55_RS18195 PF10531 SLBB domain CKQ55_RS18200 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS18200 PF00171 Aldehyde dehydrogenase family CKQ55_RS18205 PF00171 Aldehyde dehydrogenase family CKQ55_RS18210 PF01923 Cobalamin adenosyltransferase CKQ55_RS18215 PF03319 Ethanolamine utilisation protein EutN/carboxysome CKQ55_RS18225 PF06130 Phosphate propanoyltransferase CKQ55_RS18230 PF00936 BMC domain CKQ55_RS18235 PF00936 BMC domain CKQ55_RS18245 PF18427 DD-reactivating factor swiveling domain CKQ55_RS18245 PF08841 Diol dehydratase reactivase ATPase-like domain CKQ55_RS18250 PF02287 Dehydratase small subunit CKQ55_RS18255 PF02288 Dehydratase medium subunit CKQ55_RS18260 PF02286 Dehydratase large subunit CKQ55_RS18265 PF00936 BMC domain CKQ55_RS18280 PF00936 BMC domain CKQ55_RS18285 PF00936 BMC domain CKQ55_RS18290 PF00230 Major intrinsic protein CKQ55_RS18295 PF12833 Helix-turn-helix domain CKQ55_RS18295 PF10114 Sensory domain found in PocR CKQ55_RS18300 PF07685 CobB/CobQ-like glutamine amidotransferase domain CKQ55_RS18300 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CKQ55_RS18305 PF03186 CobD/Cbib protein CKQ55_RS18310 PF02570 Precorrin-8X methylmutase CKQ55_RS18315 PF01888 CbiD CKQ55_RS18320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CKQ55_RS18325 PF05175 Methyltransferase small domain CKQ55_RS18330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CKQ55_RS18335 PF01890 Cobalamin synthesis G C-terminus CKQ55_RS18335 PF11761 Cobalamin biosynthesis central region CKQ55_RS18335 PF11760 Cobalamin synthesis G N-terminal CKQ55_RS18340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CKQ55_RS18345 PF02571 Precorrin-6x reductase CbiJ/CobK CKQ55_RS18350 PF06180 Cobalt chelatase (CbiK) CKQ55_RS18355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CKQ55_RS18360 PF01891 Cobalt uptake substrate-specific transmembrane region CKQ55_RS18365 PF02553 Cobalt transport protein component CbiN CKQ55_RS18370 PF02361 Cobalt transport protein CKQ55_RS18375 PF00005 ABC transporter CKQ55_RS18380 PF07685 CobB/CobQ-like glutamine amidotransferase domain CKQ55_RS18385 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CKQ55_RS18390 PF02277 Phosphoribosyltransferase CKQ55_RS18410 PF03562 MltA specific insert domain CKQ55_RS18410 PF06725 3D domain CKQ55_RS18415 PF00899 ThiF family CKQ55_RS18420 PF02657 Fe-S metabolism associated domain CKQ55_RS18425 PF00266 Aminotransferase class-V CKQ55_RS18430 PF06004 Bacterial protein of unknown function (DUF903) CKQ55_RS18435 PF03466 LysR substrate binding domain CKQ55_RS18435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS18440 PF04241 Protein of unknown function (DUF423) CKQ55_RS18445 PF01728 FtsJ-like methyltransferase CKQ55_RS18445 PF18125 RlmM ferredoxin-like domain CKQ55_RS18450 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS18450 PF00455 DeoR C terminal sensor domain CKQ55_RS18455 PF05025 RbsD / FucU transport protein family CKQ55_RS18460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS18460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS18465 PF07882 L-fucose isomerase, second N-terminal domain CKQ55_RS18465 PF02952 L-fucose isomerase, C-terminal domain CKQ55_RS18465 PF07881 L-fucose isomerase, first N-terminal domain CKQ55_RS18470 PF07690 Major Facilitator Superfamily CKQ55_RS18475 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS18480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CKQ55_RS18480 PF01367 5'-3' exonuclease, C-terminal SAM fold CKQ55_RS18485 PF00158 Sigma-54 interaction domain CKQ55_RS18490 PF00296 Luciferase-like monooxygenase CKQ55_RS18500 PF00296 Luciferase-like monooxygenase CKQ55_RS18505 PF09084 NMT1/THI5 like CKQ55_RS18510 PF03315 Serine dehydratase beta chain CKQ55_RS18510 PF03313 Serine dehydratase alpha chain CKQ55_RS18520 PF03641 Possible lysine decarboxylase CKQ55_RS18520 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CKQ55_RS18520 PF11892 Domain of unknown function (DUF3412) CKQ55_RS18525 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CKQ55_RS18525 PF14489 QueF-like protein CKQ55_RS18530 PF07348 Syd protein (SUKH-2) CKQ55_RS18535 PF04287 tRNA pseudouridine synthase C CKQ55_RS18540 PF00849 RNA pseudouridylate synthase CKQ55_RS18545 PF00258 Flavodoxin CKQ55_RS18555 PF07690 Major Facilitator Superfamily CKQ55_RS18560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS18560 PF13378 Enolase C-terminal domain-like CKQ55_RS18565 PF13378 Enolase C-terminal domain-like CKQ55_RS18575 PF00672 HAMP domain CKQ55_RS18575 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS18575 PF01627 Hpt domain CKQ55_RS18575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS18575 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CKQ55_RS18575 PF00072 Response regulator receiver domain CKQ55_RS18580 PF01938 TRAM domain CKQ55_RS18580 PF05958 tRNA (Uracil-5-)-methyltransferase CKQ55_RS18585 PF02824 TGS domain CKQ55_RS18585 PF13291 ACT domain CKQ55_RS18585 PF04607 Region found in RelA / SpoT proteins CKQ55_RS18590 PF03819 MazG nucleotide pyrophosphohydrolase domain CKQ55_RS18595 PF00117 Glutamine amidotransferase class-I CKQ55_RS18595 PF06418 CTP synthase N-terminus CKQ55_RS18600 PF00113 Enolase, C-terminal TIM barrel domain CKQ55_RS18600 PF03952 Enolase, N-terminal domain CKQ55_RS18610 PF04055 Radical SAM superfamily CKQ55_RS18615 PF01242 6-pyruvoyl tetrahydropterin synthase CKQ55_RS18625 PF00175 Oxidoreductase NAD-binding domain CKQ55_RS18625 PF00258 Flavodoxin CKQ55_RS18625 PF00667 FAD binding domain CKQ55_RS18630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CKQ55_RS18630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CKQ55_RS18640 PF01507 Phosphoadenosine phosphosulfate reductase family CKQ55_RS18645 PF00270 DEAD/DEAH box helicase CKQ55_RS18645 PF00271 Helicase conserved C-terminal domain CKQ55_RS18645 PF18019 HD domain CKQ55_RS18650 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CKQ55_RS18665 PF09704 CRISPR-associated protein (Cas_Cas5) CKQ55_RS18675 PF01867 CRISPR associated protein Cas1 CKQ55_RS18680 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CKQ55_RS18685 PF04389 Peptidase family M28 CKQ55_RS18690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CKQ55_RS18690 PF10414 Sirohaem synthase dimerisation region CKQ55_RS18690 PF14824 Sirohaem biosynthesis protein central CKQ55_RS18695 PF01507 Phosphoadenosine phosphosulfate reductase family CKQ55_RS18700 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS18710 PF12084 Protein of unknown function (DUF3561) CKQ55_RS18715 PF04977 Septum formation initiator CKQ55_RS18720 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CKQ55_RS18725 PF02542 YgbB family CKQ55_RS18730 PF01142 tRNA pseudouridine synthase D (TruD) CKQ55_RS18735 PF01975 Survival protein SurE CKQ55_RS18745 PF01476 LysM domain CKQ55_RS18745 PF01551 Peptidase family M23 CKQ55_RS18750 PF04545 Sigma-70, region 4 CKQ55_RS18750 PF04542 Sigma-70 region 2 CKQ55_RS18750 PF00140 Sigma-70 factor, region 1.2 CKQ55_RS18750 PF04539 Sigma-70 region 3 CKQ55_RS18760 PF07690 Major Facilitator Superfamily CKQ55_RS18765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS18765 PF03466 LysR substrate binding domain CKQ55_RS18770 PF01047 MarR family CKQ55_RS18775 PF02441 Flavoprotein CKQ55_RS18780 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CKQ55_RS18790 PF01848 Hok/gef family CKQ55_RS18795 PF01624 MutS domain I CKQ55_RS18795 PF05188 MutS domain II CKQ55_RS18795 PF00488 MutS domain V CKQ55_RS18795 PF05192 MutS domain III CKQ55_RS18795 PF05190 MutS family domain IV CKQ55_RS18800 PF00419 Fimbrial protein CKQ55_RS18810 PF00577 Outer membrane usher protein CKQ55_RS18810 PF13954 PapC N-terminal domain CKQ55_RS18810 PF13953 PapC C-terminal domain CKQ55_RS18815 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS18815 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS18825 PF00419 Fimbrial protein CKQ55_RS18855 PF00005 ABC transporter CKQ55_RS18855 PF00664 ABC transporter transmembrane region CKQ55_RS18860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS18865 PF00005 ABC transporter CKQ55_RS18865 PF02687 FtsX-like permease family CKQ55_RS18865 PF12704 MacB-like periplasmic core domain CKQ55_RS18870 PF02321 Outer membrane efflux protein CKQ55_RS18875 PF00109 Beta-ketoacyl synthase, N-terminal domain CKQ55_RS18875 PF02801 Beta-ketoacyl synthase, C-terminal domain CKQ55_RS18920 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS18925 PF07729 FCD domain CKQ55_RS18925 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS18930 PF00107 Zinc-binding dehydrogenase CKQ55_RS18930 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS18935 PF07690 Major Facilitator Superfamily CKQ55_RS18940 PF00106 short chain dehydrogenase CKQ55_RS18945 PF13378 Enolase C-terminal domain-like CKQ55_RS18945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS18950 PF00005 ABC transporter CKQ55_RS18955 PF01032 FecCD transport family CKQ55_RS18960 PF01497 Periplasmic binding protein CKQ55_RS18965 PF05171 Haemin-degrading HemS.ChuX domain CKQ55_RS18970 PF00593 TonB dependent receptor CKQ55_RS18970 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS18980 PF11756 Nitrous oxide-stimulated promoter CKQ55_RS18985 PF00950 ABC 3 transport family CKQ55_RS18990 PF00950 ABC 3 transport family CKQ55_RS18995 PF00005 ABC transporter CKQ55_RS19000 PF01297 Zinc-uptake complex component A periplasmic CKQ55_RS19005 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS19010 PF00480 ROK family CKQ55_RS19015 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CKQ55_RS19020 PF02378 Phosphotransferase system, EIIC CKQ55_RS19025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS19030 PF02378 Phosphotransferase system, EIIC CKQ55_RS19035 PF02264 LamB porin CKQ55_RS19045 PF00232 Glycosyl hydrolase family 1 CKQ55_RS19050 PF13472 GDSL-like Lipase/Acylhydrolase family CKQ55_RS19050 PF07859 alpha/beta hydrolase fold CKQ55_RS19055 PF01590 GAF domain CKQ55_RS19055 PF00158 Sigma-54 interaction domain CKQ55_RS19055 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS19060 PF02769 AIR synthase related protein, C-terminal domain CKQ55_RS19060 PF00586 AIR synthase related protein, N-terminal domain CKQ55_RS19065 PF01924 Hydrogenase formation hypA family CKQ55_RS19070 PF01455 HupF/HypC family CKQ55_RS19075 PF02492 CobW/HypB/UreG, nucleotide-binding domain CKQ55_RS19080 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CKQ55_RS19085 PF11046 Transcriptional repressor of hyc and hyp operons CKQ55_RS19090 PF13247 4Fe-4S dicluster domain CKQ55_RS19095 PF00361 Proton-conducting membrane transporter CKQ55_RS19100 PF00146 NADH dehydrogenase CKQ55_RS19105 PF00374 Nickel-dependent hydrogenase CKQ55_RS19105 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CKQ55_RS19105 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CKQ55_RS19110 PF12838 4Fe-4S dicluster domain CKQ55_RS19115 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CKQ55_RS19120 PF07450 Formate hydrogenlyase maturation protein HycH CKQ55_RS19125 PF01750 Hydrogenase maturation protease CKQ55_RS19130 PF00232 Glycosyl hydrolase family 1 CKQ55_RS19135 PF02378 Phosphotransferase system, EIIC CKQ55_RS19135 PF00367 phosphotransferase system, EIIB CKQ55_RS19140 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS19145 PF12800 4Fe-4S binding domain CKQ55_RS19145 PF13247 4Fe-4S dicluster domain CKQ55_RS19150 PF01300 Telomere recombination CKQ55_RS19150 PF17788 HypF Kae1-like domain CKQ55_RS19150 PF00708 Acylphosphatase CKQ55_RS19150 PF07503 HypF finger CKQ55_RS19155 PF03824 High-affinity nickel-transport protein CKQ55_RS19160 PF18113 Rubredoxin binding C-terminal domain CKQ55_RS19160 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS19165 PF00258 Flavodoxin CKQ55_RS19165 PF00301 Rubredoxin CKQ55_RS19165 PF00753 Metallo-beta-lactamase superfamily CKQ55_RS19175 PF00158 Sigma-54 interaction domain CKQ55_RS19175 PF01590 GAF domain CKQ55_RS19180 PF00571 CBS domain CKQ55_RS19180 PF01380 SIS domain CKQ55_RS19185 PF00455 DeoR C terminal sensor domain CKQ55_RS19185 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS19190 PF06923 Glucitol operon activator protein (GutM) CKQ55_RS19195 PF00106 short chain dehydrogenase CKQ55_RS19200 PF03829 PTS system glucitol/sorbitol-specific IIA component CKQ55_RS19205 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CKQ55_RS19205 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CKQ55_RS19210 PF03608 PTS system enzyme II sorbitol-specific factor CKQ55_RS19215 PF13406 Transglycosylase SLT domain CKQ55_RS19225 PF00005 ABC transporter CKQ55_RS19230 PF00950 ABC 3 transport family CKQ55_RS19235 PF01297 Zinc-uptake complex component A periplasmic CKQ55_RS19245 PF02464 Competence-damaged protein CKQ55_RS19250 PF00154 recA bacterial DNA recombination protein CKQ55_RS19255 PF02631 RecX family CKQ55_RS19260 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CKQ55_RS19260 PF01411 tRNA synthetases class II (A) CKQ55_RS19260 PF02272 DHHA1 domain CKQ55_RS19265 PF02599 Global regulator protein family CKQ55_RS19295 PF04972 BON domain CKQ55_RS19300 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS19305 PF09335 SNARE associated Golgi protein CKQ55_RS19310 PF04262 Glutamate-cysteine ligase CKQ55_RS19315 PF02664 S-Ribosylhomocysteinase (LuxS) CKQ55_RS19320 PF12833 Helix-turn-helix domain CKQ55_RS19320 PF12852 Cupin CKQ55_RS19325 PF08502 LeuA allosteric (dimerisation) domain CKQ55_RS19325 PF00682 HMGL-like CKQ55_RS19330 PF07690 Major Facilitator Superfamily CKQ55_RS19335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS19335 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS19340 PF01047 MarR family CKQ55_RS19345 PF05437 Branched-chain amino acid transport protein (AzlD) CKQ55_RS19350 PF03591 AzlC protein CKQ55_RS19355 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CKQ55_RS19360 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS19365 PF00005 ABC transporter CKQ55_RS19365 PF00571 CBS domain CKQ55_RS19370 PF00268 Ribonucleotide reductase, small chain CKQ55_RS19375 PF00317 Ribonucleotide reductase, all-alpha domain CKQ55_RS19375 PF08343 Ribonucleotide reductase N-terminal CKQ55_RS19375 PF02867 Ribonucleotide reductase, barrel domain CKQ55_RS19380 PF07972 NrdI Flavodoxin like CKQ55_RS19385 PF00462 Glutaredoxin CKQ55_RS19390 PF02627 Carboxymuconolactone decarboxylase family CKQ55_RS19395 PF00155 Aminotransferase class I and II CKQ55_RS19395 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS19400 PF05957 Bacterial protein of unknown function (DUF883) CKQ55_RS19405 PF09400 Protein of unknown function (DUF2002) CKQ55_RS19410 PF06610 L-alanine exporter CKQ55_RS19420 PF00816 H-NS histone family CKQ55_RS19430 PF00581 Rhodanese-like domain CKQ55_RS19430 PF11127 Protein of unknown function (DUF2892) CKQ55_RS19435 PF01022 Bacterial regulatory protein, arsR family CKQ55_RS19440 PF01590 GAF domain CKQ55_RS19440 PF00158 Sigma-54 interaction domain CKQ55_RS19440 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS19445 PF00171 Aldehyde dehydrogenase family CKQ55_RS19455 PF00419 Fimbrial protein CKQ55_RS19460 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS19460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS19465 PF13954 PapC N-terminal domain CKQ55_RS19465 PF00577 Outer membrane usher protein CKQ55_RS19465 PF13953 PapC C-terminal domain CKQ55_RS19475 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS19480 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS19485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS19485 PF03466 LysR substrate binding domain CKQ55_RS19495 PF07690 Major Facilitator Superfamily CKQ55_RS19500 PF00034 Cytochrome c CKQ55_RS19500 PF03150 Di-haem cytochrome c peroxidase CKQ55_RS19500 PF14376 Haem-binding domain CKQ55_RS19510 PF03150 Di-haem cytochrome c peroxidase CKQ55_RS19510 PF14376 Haem-binding domain CKQ55_RS19510 PF00034 Cytochrome c CKQ55_RS19515 PF00005 ABC transporter CKQ55_RS19520 PF03379 CcmB protein CKQ55_RS19525 PF01578 Cytochrome C assembly protein CKQ55_RS19530 PF04995 Heme exporter protein D (CcmD) CKQ55_RS19535 PF03100 CcmE CKQ55_RS19540 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CKQ55_RS19540 PF01578 Cytochrome C assembly protein CKQ55_RS19545 PF08534 Redoxin CKQ55_RS19550 PF03918 Cytochrome C biogenesis protein CKQ55_RS19555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS19560 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS19565 PF00005 ABC transporter CKQ55_RS19570 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS19585 PF00491 Arginase family CKQ55_RS19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS19590 PF03466 LysR substrate binding domain CKQ55_RS19620 PF01844 HNH endonuclease CKQ55_RS19635 PF17345 Family of unknown function (DUF5375) CKQ55_RS19660 PF04606 Ogr/Delta-like zinc finger CKQ55_RS19675 PF13356 Arm DNA-binding domain CKQ55_RS19675 PF00589 Phage integrase family CKQ55_RS19685 PF01668 SmpB protein CKQ55_RS19690 PF03364 Polyketide cyclase / dehydrase and lipid transport CKQ55_RS19695 PF03658 RnfH family Ubiquitin CKQ55_RS19700 PF04355 SmpA / OmlA family CKQ55_RS19705 PF02463 RecF/RecN/SMC N terminal domain CKQ55_RS19710 PF01513 ATP-NAD kinase CKQ55_RS19715 PF01025 GrpE CKQ55_RS19720 PF00571 CBS domain CKQ55_RS19720 PF03471 Transporter associated domain CKQ55_RS19720 PF01595 Cyclin M transmembrane N-terminal domain CKQ55_RS19725 PF01578 Cytochrome C assembly protein CKQ55_RS19730 PF02881 SRP54-type protein, helical bundle domain CKQ55_RS19730 PF00448 SRP54-type protein, GTPase domain CKQ55_RS19730 PF02978 Signal peptide binding domain CKQ55_RS19735 PF00886 Ribosomal protein S16 CKQ55_RS19740 PF01782 RimM N-terminal domain CKQ55_RS19740 PF05239 PRC-barrel domain CKQ55_RS19745 PF01746 tRNA (Guanine-1)-methyltransferase CKQ55_RS19750 PF01245 Ribosomal protein L19 CKQ55_RS19765 PF00691 OmpA family CKQ55_RS19770 PF17152 Periplasmic sensor domain CKQ55_RS19770 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS19775 PF13689 YfiR/HmsC-like CKQ55_RS19780 PF00793 DAHP synthetase I family CKQ55_RS19785 PF02153 Prephenate dehydrogenase CKQ55_RS19785 PF01817 Chorismate mutase type II CKQ55_RS19790 PF08450 SMP-30/Gluconolactonase/LRE-like region CKQ55_RS19795 PF00800 Prephenate dehydratase CKQ55_RS19795 PF01817 Chorismate mutase type II CKQ55_RS19800 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CKQ55_RS19805 PF13525 Outer membrane lipoprotein CKQ55_RS19810 PF01479 S4 domain CKQ55_RS19810 PF00849 RNA pseudouridylate synthase CKQ55_RS19815 PF02578 Multi-copper polyphenol oxidoreductase laccase CKQ55_RS19820 PF10431 C-terminal, D2-small domain, of ClpB protein CKQ55_RS19820 PF17871 AAA lid domain CKQ55_RS19820 PF07724 AAA domain (Cdc48 subfamily) CKQ55_RS19820 PF02861 Clp amino terminal domain, pathogenicity island component CKQ55_RS19820 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS19855 PF00083 Sugar (and other) transporter CKQ55_RS19860 PF10043 Predicted periplasmic lipoprotein (DUF2279) CKQ55_RS19865 PF13091 PLD-like domain CKQ55_RS19870 PF13607 Succinyl-CoA ligase like flavodoxin domain CKQ55_RS19870 PF13380 CoA binding domain CKQ55_RS19870 PF00583 Acetyltransferase (GNAT) family CKQ55_RS19875 PF03942 DTW domain CKQ55_RS19880 PF00085 Thioredoxin CKQ55_RS19885 PF08032 RNA 2'-O ribose methyltransferase substrate binding CKQ55_RS19885 PF00588 SpoU rRNA Methylase family CKQ55_RS19890 PF01797 Transposase IS200 like CKQ55_RS19895 PF03167 Uracil DNA glycosylase superfamily CKQ55_RS19900 PF01228 Glycine radical CKQ55_RS19905 PF00271 Helicase conserved C-terminal domain CKQ55_RS19905 PF00270 DEAD/DEAH box helicase CKQ55_RS19910 PF05175 Methyltransferase small domain CKQ55_RS19915 PF00890 FAD binding domain CKQ55_RS19915 PF02910 Fumarate reductase flavoprotein C-term CKQ55_RS19920 PF04542 Sigma-70 region 2 CKQ55_RS19920 PF08281 Sigma-70, region 4 CKQ55_RS19925 PF03873 Anti sigma-E protein RseA, C-terminal domain CKQ55_RS19925 PF03872 Anti sigma-E protein RseA, N-terminal domain CKQ55_RS19930 PF17188 MucB/RseB C-terminal domain CKQ55_RS19930 PF03888 MucB/RseB N-terminal domain CKQ55_RS19940 PF00679 Elongation factor G C-terminus CKQ55_RS19940 PF06421 GTP-binding protein LepA C-terminus CKQ55_RS19940 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS19940 PF03144 Elongation factor Tu domain 2 CKQ55_RS19945 PF10502 Signal peptidase, peptidase S26 CKQ55_RS19955 PF14622 Ribonuclease-III-like CKQ55_RS19955 PF00035 Double-stranded RNA binding motif CKQ55_RS19960 PF07650 KH domain CKQ55_RS19960 PF01926 50S ribosome-binding GTPase CKQ55_RS19970 PF11967 Recombination protein O N terminal CKQ55_RS19970 PF02565 Recombination protein O C terminal CKQ55_RS19975 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CKQ55_RS19980 PF01648 4'-phosphopantetheinyl transferase superfamily CKQ55_RS19985 PF12838 4Fe-4S dicluster domain CKQ55_RS19990 PF01418 Helix-turn-helix domain, rpiR family CKQ55_RS19990 PF01380 SIS domain CKQ55_RS20000 PF14437 MafB19-like deaminase CKQ55_RS20005 PF01464 Transglycosylase SLT domain CKQ55_RS20005 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS20015 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CKQ55_RS20015 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CKQ55_RS20015 PF02769 AIR synthase related protein, C-terminal domain CKQ55_RS20020 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS20020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS20025 PF13942 YfhG lipoprotein CKQ55_RS20030 PF00158 Sigma-54 interaction domain CKQ55_RS20030 PF00072 Response regulator receiver domain CKQ55_RS20035 PF00543 Nitrogen regulatory protein P-II CKQ55_RS20040 PF00042 Globin CKQ55_RS20040 PF00970 Oxidoreductase FAD-binding domain CKQ55_RS20040 PF00175 Oxidoreductase NAD-binding domain CKQ55_RS20055 PF00464 Serine hydroxymethyltransferase CKQ55_RS20060 PF07681 DoxX CKQ55_RS20065 PF00480 ROK family CKQ55_RS20070 PF13181 Tetratricopeptide repeat CKQ55_RS20070 PF17128 Domain of unknown function (DUF5107) CKQ55_RS20075 PF00083 Sugar (and other) transporter CKQ55_RS20080 PF01263 Aldose 1-epimerase CKQ55_RS20085 PF12832 MFS_1 like family CKQ55_RS20090 PF00874 PRD domain CKQ55_RS20095 PF06226 Protein of unknown function (DUF1007) CKQ55_RS20100 PF03824 High-affinity nickel-transport protein CKQ55_RS20105 PF00459 Inositol monophosphatase family CKQ55_RS20110 PF00588 SpoU rRNA Methylase family CKQ55_RS20115 PF02082 Transcriptional regulator CKQ55_RS20120 PF00266 Aminotransferase class-V CKQ55_RS20125 PF01592 NifU-like N terminal domain CKQ55_RS20130 PF01521 Iron-sulphur cluster biosynthesis CKQ55_RS20135 PF07743 HSCB C-terminal oligomerisation domain CKQ55_RS20135 PF00226 DnaJ domain CKQ55_RS20140 PF00012 Hsp70 protein CKQ55_RS20145 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS20150 PF04384 Iron-sulphur cluster assembly CKQ55_RS20155 PF12404 Peptidase CKQ55_RS20155 PF00883 Cytosol aminopeptidase family, catalytic domain CKQ55_RS20160 PF14581 SseB protein C-terminal domain CKQ55_RS20160 PF07179 SseB protein N-terminal domain CKQ55_RS20165 PF00581 Rhodanese-like domain CKQ55_RS20170 PF07687 Peptidase dimerisation domain CKQ55_RS20170 PF01546 Peptidase family M20/M25/M40 CKQ55_RS20180 PF07678 A-macroglobulin TED domain CKQ55_RS20180 PF00207 Alpha-2-macroglobulin family CKQ55_RS20180 PF07703 Alpha-2-macroglobulin bait region domain CKQ55_RS20180 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CKQ55_RS20180 PF01835 MG2 domain CKQ55_RS20180 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CKQ55_RS20180 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CKQ55_RS20180 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CKQ55_RS20180 PF17962 Bacterial macroglobulin domain 6 CKQ55_RS20185 PF06832 Penicillin-Binding Protein C-terminus Family CKQ55_RS20185 PF00912 Transglycosylase CKQ55_RS20185 PF00905 Penicillin binding protein transpeptidase domain CKQ55_RS20190 PF00334 Nucleoside diphosphate kinase CKQ55_RS20195 PF04055 Radical SAM superfamily CKQ55_RS20200 PF13464 Domain of unknown function (DUF4115) CKQ55_RS20205 PF04551 GcpE protein CKQ55_RS20210 PF03129 Anticodon binding domain CKQ55_RS20210 PF13393 Histidyl-tRNA synthetase CKQ55_RS20215 PF09976 Tetratricopeptide repeat-like domain CKQ55_RS20220 PF13360 PQQ-like domain CKQ55_RS20225 PF01926 50S ribosome-binding GTPase CKQ55_RS20225 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CKQ55_RS20230 PF03544 Gram-negative bacterial TonB protein C-terminal CKQ55_RS20240 PF07191 zinc-ribbons CKQ55_RS20250 PF16485 Protealysin propeptide CKQ55_RS20250 PF02868 Thermolysin metallopeptidase, alpha-helical domain CKQ55_RS20250 PF01447 Thermolysin metallopeptidase, catalytic domain CKQ55_RS20255 PF02601 Exonuclease VII, large subunit CKQ55_RS20255 PF13742 OB-fold nucleic acid binding domain CKQ55_RS20260 PF00571 CBS domain CKQ55_RS20260 PF00478 IMP dehydrogenase / GMP reductase domain CKQ55_RS20265 PF00958 GMP synthase C terminal domain CKQ55_RS20265 PF00117 Glutamine amidotransferase class-I CKQ55_RS20265 PF02540 NAD synthase CKQ55_RS20275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS20275 PF03466 LysR substrate binding domain CKQ55_RS20280 PF11119 Protein of unknown function (DUF2633) CKQ55_RS20285 PF05231 MASE1 CKQ55_RS20285 PF00563 EAL domain CKQ55_RS20290 PF02541 Ppx/GppA phosphatase family CKQ55_RS20295 PF13089 Polyphosphate kinase N-terminal domain CKQ55_RS20295 PF17941 Polyphosphate kinase C-terminal domain 1 CKQ55_RS20295 PF02503 Polyphosphate kinase middle domain CKQ55_RS20295 PF13090 Polyphosphate kinase C-terminal domain 2 CKQ55_RS20320 PF00551 Formyl transferase CKQ55_RS20325 PF00586 AIR synthase related protein, N-terminal domain CKQ55_RS20325 PF02769 AIR synthase related protein, C-terminal domain CKQ55_RS20335 PF00480 ROK family CKQ55_RS20340 PF00232 Glycosyl hydrolase family 1 CKQ55_RS20350 PF00860 Permease family CKQ55_RS20355 PF00308 Bacterial dnaA protein CKQ55_RS20360 PF03960 ArsC family CKQ55_RS20365 PF01435 Peptidase family M48 CKQ55_RS20370 PF01594 AI-2E family transporter CKQ55_RS20375 PF00578 AhpC/TSA family CKQ55_RS20380 PF01842 ACT domain CKQ55_RS20385 PF00701 Dihydrodipicolinate synthetase family CKQ55_RS20390 PF06804 NlpB/DapX lipoprotein CKQ55_RS20395 PF01259 SAICAR synthetase CKQ55_RS20400 PF04228 Putative neutral zinc metallopeptidase CKQ55_RS20405 PF08351 Domain of unknown function (DUF1726) CKQ55_RS20405 PF05127 Helicase CKQ55_RS20405 PF17176 tRNA-binding domain CKQ55_RS20405 PF13718 GNAT acetyltransferase 2 CKQ55_RS20410 PF02230 Phospholipase/Carboxylesterase CKQ55_RS20415 PF13980 Uncharacterised protein family (UPF0370) CKQ55_RS20420 PF01546 Peptidase family M20/M25/M40 CKQ55_RS20420 PF07687 Peptidase dimerisation domain CKQ55_RS20425 PF03960 ArsC family CKQ55_RS20430 PF00873 AcrB/AcrD/AcrF family CKQ55_RS20435 PF13247 4Fe-4S dicluster domain CKQ55_RS20435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS20435 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CKQ55_RS20440 PF00293 NUDIX domain CKQ55_RS20445 PF06674 Protein of unknown function (DUF1176) CKQ55_RS20450 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS20450 PF02780 Transketolase, C-terminal domain CKQ55_RS20450 PF00456 Transketolase, thiamine diphosphate binding domain CKQ55_RS20455 PF01515 Phosphate acetyl/butaryl transferase CKQ55_RS20455 PF00390 Malic enzyme, N-terminal domain CKQ55_RS20455 PF03949 Malic enzyme, NAD binding domain CKQ55_RS20460 PF00936 BMC domain CKQ55_RS20465 PF10662 Ethanolamine utilisation - propanediol utilisation CKQ55_RS20470 PF06249 Ethanolamine utilisation protein EutQ CKQ55_RS20475 PF01923 Cobalamin adenosyltransferase CKQ55_RS20480 PF01515 Phosphate acetyl/butaryl transferase CKQ55_RS20485 PF00936 BMC domain CKQ55_RS20490 PF03319 Ethanolamine utilisation protein EutN/carboxysome CKQ55_RS20495 PF00171 Aldehyde dehydrogenase family CKQ55_RS20505 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS20510 PF04346 Ethanolamine utilisation protein, EutH CKQ55_RS20515 PF06277 Ethanolamine utilisation protein EutA CKQ55_RS20520 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CKQ55_RS20525 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CKQ55_RS20530 PF00936 BMC domain CKQ55_RS20535 PF00936 BMC domain CKQ55_RS20535 PF16365 Ethanolamine utilization protein EutK C-terminus CKQ55_RS20540 PF12833 Helix-turn-helix domain CKQ55_RS20545 PF01218 Coproporphyrinogen III oxidase CKQ55_RS20550 PF01520 N-acetylmuramoyl-L-alanine amidase CKQ55_RS20560 PF00583 Acetyltransferase (GNAT) family CKQ55_RS20565 PF11143 Protein of unknown function (DUF2919) CKQ55_RS20570 PF06572 Protein of unknown function (DUF1131) CKQ55_RS20575 PF04261 Dyp-type peroxidase family CKQ55_RS20585 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS20590 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS20595 PF00005 ABC transporter CKQ55_RS20600 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS20605 PF13474 SnoaL-like domain CKQ55_RS20610 PF00117 Glutamine amidotransferase class-I CKQ55_RS20615 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS20615 PF00155 Aminotransferase class I and II CKQ55_RS20620 PF08543 Phosphomethylpyrimidine kinase CKQ55_RS20630 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CKQ55_RS20635 PF00391 PEP-utilising enzyme, mobile domain CKQ55_RS20635 PF02896 PEP-utilising enzyme, TIM barrel domain CKQ55_RS20635 PF05524 PEP-utilising enzyme, N-terminal CKQ55_RS20640 PF00381 PTS HPr component phosphorylation site CKQ55_RS20645 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS20655 PF04354 ZipA, C-terminal FtsZ-binding domain CKQ55_RS20660 PF03120 NAD-dependent DNA ligase OB-fold domain CKQ55_RS20660 PF12826 Helix-hairpin-helix motif CKQ55_RS20660 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CKQ55_RS20660 PF00533 BRCA1 C Terminus (BRCT) domain CKQ55_RS20660 PF01653 NAD-dependent DNA ligase adenylation domain CKQ55_RS20665 PF12843 Putative quorum-sensing-regulated virulence factor CKQ55_RS20670 PF13593 SBF-like CPA transporter family (DUF4137) CKQ55_RS20675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS20675 PF03466 LysR substrate binding domain CKQ55_RS20680 PF01048 Phosphorylase superfamily CKQ55_RS20685 PF03825 Nucleoside H+ symporter CKQ55_RS20690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS20690 PF03466 LysR substrate binding domain CKQ55_RS20715 PF00749 tRNA synthetases class I (E and Q), catalytic domain CKQ55_RS20720 PF07037 Putative transcription regulator (DUF1323) CKQ55_RS20725 PF07037 Putative transcription regulator (DUF1323) CKQ55_RS20740 PF00563 EAL domain CKQ55_RS20740 PF05231 MASE1 CKQ55_RS20745 PF07662 Na+ dependent nucleoside transporter C-terminus CKQ55_RS20745 PF07670 Nucleoside recognition CKQ55_RS20745 PF01773 Na+ dependent nucleoside transporter N-terminus CKQ55_RS20750 PF01566 Natural resistance-associated macrophage protein CKQ55_RS20755 PF10697 Protein of unknown function (DUF2502) CKQ55_RS20760 PF00248 Aldo/keto reductase family CKQ55_RS20765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CKQ55_RS20765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS20765 PF00205 Thiamine pyrophosphate enzyme, central domain CKQ55_RS20770 PF00654 Voltage gated chloride channel CKQ55_RS20775 PF02685 Glucokinase CKQ55_RS20780 PF00072 Response regulator receiver domain CKQ55_RS20780 PF04397 LytTr DNA-binding domain CKQ55_RS20785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS20785 PF06580 Histidine kinase CKQ55_RS20785 PF07694 5TMR of 5TMR-LYT CKQ55_RS20790 PF00155 Aminotransferase class I and II CKQ55_RS20795 PF07690 Major Facilitator Superfamily CKQ55_RS20800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS20800 PF03466 LysR substrate binding domain CKQ55_RS20825 PF01226 Formate/nitrite transporter CKQ55_RS20830 PF04333 MlaA lipoprotein CKQ55_RS20835 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CKQ55_RS20840 PF04175 Protein of unknown function (DUF406) CKQ55_RS20845 PF02803 Thiolase, C-terminal domain CKQ55_RS20845 PF00108 Thiolase, N-terminal domain CKQ55_RS20850 PF00378 Enoyl-CoA hydratase/isomerase CKQ55_RS20850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CKQ55_RS20850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CKQ55_RS20855 PF00300 Histidine phosphatase superfamily (branch 1) CKQ55_RS20860 PF01713 Smr domain CKQ55_RS20865 PF05175 Methyltransferase small domain CKQ55_RS20870 PF01264 Chorismate synthase CKQ55_RS20875 PF03411 Penicillin-insensitive murein endopeptidase CKQ55_RS20880 PF01925 Sulfite exporter TauE/SafE CKQ55_RS20885 PF04315 Elongation factor P hydroxylase CKQ55_RS20890 PF08891 YfcL protein CKQ55_RS20895 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CKQ55_RS20895 PF01266 FAD dependent oxidoreductase CKQ55_RS20900 PF00109 Beta-ketoacyl synthase, N-terminal domain CKQ55_RS20900 PF02801 Beta-ketoacyl synthase, C-terminal domain CKQ55_RS20905 PF07690 Major Facilitator Superfamily CKQ55_RS20915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CKQ55_RS20915 PF11890 Domain of unknown function (DUF3410) CKQ55_RS20915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS20920 PF02774 Semialdehyde dehydrogenase, dimerisation domain CKQ55_RS20920 PF01118 Semialdehyde dehydrogenase, NAD binding domain CKQ55_RS20925 PF01416 tRNA pseudouridine synthase CKQ55_RS20930 PF09335 SNARE associated Golgi protein CKQ55_RS20935 PF17848 Acetyl-coA carboxylase zinc finger domain CKQ55_RS20935 PF01039 Carboxyl transferase domain CKQ55_RS20940 PF02875 Mur ligase family, glutamate ligase domain CKQ55_RS20940 PF08245 Mur ligase middle domain CKQ55_RS20945 PF05036 Sporulation related domain CKQ55_RS20950 PF02674 Colicin V production protein CKQ55_RS20955 PF00156 Phosphoribosyl transferase domain CKQ55_RS20960 PF02441 Flavoprotein CKQ55_RS20965 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS20970 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS20975 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS20980 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS20985 PF00005 ABC transporter CKQ55_RS20990 PF13302 Acetyltransferase (GNAT) domain CKQ55_RS21005 PF08338 Domain of unknown function (DUF1731) CKQ55_RS21005 PF01370 NAD dependent epimerase/dehydratase family CKQ55_RS21010 PF02152 Dihydroneopterin aldolase CKQ55_RS21015 PF00043 Glutathione S-transferase, C-terminal domain CKQ55_RS21015 PF02798 Glutathione S-transferase, N-terminal domain CKQ55_RS21020 PF02798 Glutathione S-transferase, N-terminal domain CKQ55_RS21020 PF14834 Glutathione S-transferase, C-terminal domain CKQ55_RS21025 PF12850 Calcineurin-like phosphoesterase superfamily domain CKQ55_RS21030 PF00293 NUDIX domain CKQ55_RS21035 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS21040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS21050 PF03611 PTS system sugar-specific permease component CKQ55_RS21055 PF00456 Transketolase, thiamine diphosphate binding domain CKQ55_RS21060 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CKQ55_RS21060 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS21060 PF02780 Transketolase, C-terminal domain CKQ55_RS21065 PF07085 DRTGG domain CKQ55_RS21065 PF01515 Phosphate acetyl/butaryl transferase CKQ55_RS21070 PF00871 Acetokinase family CKQ55_RS21075 PF04217 Protein of unknown function, DUF412 CKQ55_RS21080 PF03887 YfbU domain CKQ55_RS21085 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS21090 PF02080 TrkA-C domain CKQ55_RS21090 PF03600 Citrate transporter CKQ55_RS21100 PF00155 Aminotransferase class I and II CKQ55_RS21105 PF03466 LysR substrate binding domain CKQ55_RS21105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS21115 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CKQ55_RS21120 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CKQ55_RS21125 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CKQ55_RS21125 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CKQ55_RS21135 PF10531 SLBB domain CKQ55_RS21135 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CKQ55_RS21135 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CKQ55_RS21140 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS21140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CKQ55_RS21140 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CKQ55_RS21140 PF00384 Molybdopterin oxidoreductase CKQ55_RS21145 PF00146 NADH dehydrogenase CKQ55_RS21150 PF12838 4Fe-4S dicluster domain CKQ55_RS21155 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CKQ55_RS21160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CKQ55_RS21165 PF00361 Proton-conducting membrane transporter CKQ55_RS21165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CKQ55_RS21170 PF00361 Proton-conducting membrane transporter CKQ55_RS21175 PF00361 Proton-conducting membrane transporter CKQ55_RS21180 PF00589 Phage integrase family CKQ55_RS21190 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS21190 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS21195 PF00577 Outer membrane usher protein CKQ55_RS21195 PF13953 PapC C-terminal domain CKQ55_RS21195 PF13954 PapC N-terminal domain CKQ55_RS21200 PF00419 Fimbrial protein CKQ55_RS21210 PF00589 Phage integrase family CKQ55_RS21215 PF12706 Beta-lactamase superfamily domain CKQ55_RS21220 PF13673 Acetyltransferase (GNAT) domain CKQ55_RS21225 PF00425 chorismate binding enzyme CKQ55_RS21230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS21230 PF16582 Middle domain of thiamine pyrophosphate CKQ55_RS21230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CKQ55_RS21235 PF12697 Alpha/beta hydrolase family CKQ55_RS21240 PF00378 Enoyl-CoA hydratase/isomerase CKQ55_RS21245 PF13378 Enolase C-terminal domain-like CKQ55_RS21250 PF00501 AMP-binding enzyme CKQ55_RS21250 PF13193 AMP-binding enzyme C-terminal domain CKQ55_RS21255 PF09997 Predicted membrane protein (DUF2238) CKQ55_RS21260 PF01970 Tripartite tricarboxylate transporter TctA family CKQ55_RS21275 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS21275 PF00072 Response regulator receiver domain CKQ55_RS21280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS21280 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS21285 PF00293 NUDIX domain CKQ55_RS21290 PF04754 Putative transposase, YhgA-like CKQ55_RS21295 PF06628 Catalase-related immune-responsive CKQ55_RS21295 PF00199 Catalase CKQ55_RS21300 PF07437 YfaZ precursor CKQ55_RS21305 PF00994 Probable molybdopterin binding domain CKQ55_RS21310 PF01614 Bacterial transcriptional regulator CKQ55_RS21310 PF09339 IclR helix-turn-helix domain CKQ55_RS21315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS21315 PF13378 Enolase C-terminal domain-like CKQ55_RS21320 PF07690 Major Facilitator Superfamily CKQ55_RS21325 PF03328 HpcH/HpaI aldolase/citrate lyase family CKQ55_RS21330 PF13183 4Fe-4S dicluster domain CKQ55_RS21330 PF02754 Cysteine-rich domain CKQ55_RS21335 PF00890 FAD binding domain CKQ55_RS21340 PF04324 BFD-like [2Fe-2S] binding domain CKQ55_RS21340 PF01266 FAD dependent oxidoreductase CKQ55_RS21345 PF07690 Major Facilitator Superfamily CKQ55_RS21350 PF03009 Glycerophosphoryl diester phosphodiesterase family CKQ55_RS21355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS21355 PF03466 LysR substrate binding domain CKQ55_RS21360 PF00732 GMC oxidoreductase CKQ55_RS21360 PF05199 GMC oxidoreductase CKQ55_RS21365 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS21370 PF00268 Ribonucleotide reductase, small chain CKQ55_RS21375 PF03477 ATP cone domain CKQ55_RS21375 PF02867 Ribonucleotide reductase, barrel domain CKQ55_RS21375 PF00317 Ribonucleotide reductase, all-alpha domain CKQ55_RS21390 PF00521 DNA gyrase/topoisomerase IV, subunit A CKQ55_RS21390 PF03989 DNA gyrase C-terminal domain, beta-propeller CKQ55_RS21395 PF00072 Response regulator receiver domain CKQ55_RS21395 PF09456 RcsC Alpha-Beta-Loop (ABL) CKQ55_RS21395 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS21395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS21400 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS21400 PF00072 Response regulator receiver domain CKQ55_RS21405 PF01627 Hpt domain CKQ55_RS21405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS21405 PF16359 RcsD-ABL domain CKQ55_RS21415 PF00267 Gram-negative porin CKQ55_RS21420 PF02424 ApbE family CKQ55_RS21425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CKQ55_RS21425 PF02805 Metal binding domain of Ada CKQ55_RS21425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CKQ55_RS21425 PF12833 Helix-turn-helix domain CKQ55_RS21430 PF13532 2OG-Fe(II) oxygenase superfamily CKQ55_RS21435 PF00005 ABC transporter CKQ55_RS21440 PF01769 Divalent cation transporter CKQ55_RS21440 PF00571 CBS domain CKQ55_RS21440 PF03448 MgtE intracellular N domain CKQ55_RS21445 PF00916 Sulfate permease family CKQ55_RS21445 PF01740 STAS domain CKQ55_RS21450 PF06039 Malate:quinone oxidoreductase (Mqo) CKQ55_RS21455 PF03974 Ecotin CKQ55_RS21460 PF01594 AI-2E family transporter CKQ55_RS21470 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CKQ55_RS21495 PF17871 AAA lid domain CKQ55_RS21495 PF10431 C-terminal, D2-small domain, of ClpB protein CKQ55_RS21495 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS21495 PF07724 AAA domain (Cdc48 subfamily) CKQ55_RS21510 PF04717 Type VI secretion system, phage-baseplate injector CKQ55_RS21520 PF01476 LysM domain CKQ55_RS21520 PF00704 Glycosyl hydrolases family 18 CKQ55_RS21585 PF00884 Sulfatase CKQ55_RS21585 PF11893 Domain of unknown function (DUF3413) CKQ55_RS21590 PF07208 Protein of unknown function (DUF1414) CKQ55_RS21595 PF04245 37-kD nucleoid-associated bacterial protein CKQ55_RS21600 PF00455 DeoR C terminal sensor domain CKQ55_RS21600 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS21605 PF00293 NUDIX domain CKQ55_RS21610 PF01386 Ribosomal L25p family CKQ55_RS21615 PF04851 Type III restriction enzyme, res subunit CKQ55_RS21615 PF00271 Helicase conserved C-terminal domain CKQ55_RS21620 PF01479 S4 domain CKQ55_RS21620 PF00849 RNA pseudouridylate synthase CKQ55_RS21625 PF07690 Major Facilitator Superfamily CKQ55_RS21630 PF13989 YejG-like protein CKQ55_RS21635 PF00005 ABC transporter CKQ55_RS21635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS21640 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS21640 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS21645 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS21650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS21655 PF12792 CSS motif domain associated with EAL CKQ55_RS21655 PF00563 EAL domain CKQ55_RS21660 PF00877 NlpC/P60 family CKQ55_RS21665 PF01569 PAP2 superfamily CKQ55_RS21670 PF07683 Cobalamin synthesis protein cobW C-terminal domain CKQ55_RS21670 PF02492 CobW/HypB/UreG, nucleotide-binding domain CKQ55_RS21675 PF08125 Mannitol dehydrogenase C-terminal domain CKQ55_RS21675 PF01232 Mannitol dehydrogenase Rossmann domain CKQ55_RS21680 PF09285 Elongation factor P, C-terminal CKQ55_RS21680 PF01132 Elongation factor P (EF-P) OB domain CKQ55_RS21680 PF08207 Elongation factor P (EF-P) KOW-like domain CKQ55_RS21685 PF03692 Putative zinc- or iron-chelating domain CKQ55_RS21690 PF07690 Major Facilitator Superfamily CKQ55_RS21695 PF00381 PTS HPr component phosphorylation site CKQ55_RS21695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS21700 PF00294 pfkB family carbohydrate kinase CKQ55_RS21705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS21705 PF02378 Phosphotransferase system, EIIC CKQ55_RS21710 PF00294 pfkB family carbohydrate kinase CKQ55_RS21715 PF04227 Indigoidine synthase A like protein CKQ55_RS21720 PF01773 Na+ dependent nucleoside transporter N-terminus CKQ55_RS21720 PF07662 Na+ dependent nucleoside transporter C-terminus CKQ55_RS21725 PF00294 pfkB family carbohydrate kinase CKQ55_RS21730 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS21735 PF03601 Conserved hypothetical protein 698 CKQ55_RS21740 PF03466 LysR substrate binding domain CKQ55_RS21740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS21750 PF00324 Amino acid permease CKQ55_RS21755 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS21755 PF00593 TonB dependent receptor CKQ55_RS21760 PF00756 Putative esterase CKQ55_RS21765 PF01227 GTP cyclohydrolase I CKQ55_RS21770 PF04235 Protein of unknown function (DUF418) CKQ55_RS21780 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS21785 PF13407 Periplasmic binding protein domain CKQ55_RS21790 PF00005 ABC transporter CKQ55_RS21795 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS21800 PF02698 DUF218 domain CKQ55_RS21805 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CKQ55_RS21805 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CKQ55_RS21810 PF04172 LrgB-like family CKQ55_RS21815 PF03788 LrgA family CKQ55_RS21820 PF03466 LysR substrate binding domain CKQ55_RS21820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS21825 PF07690 Major Facilitator Superfamily CKQ55_RS21830 PF07883 Cupin domain CKQ55_RS21835 PF01557 Fumarylacetoacetate (FAA) hydrolase family CKQ55_RS21840 PF02798 Glutathione S-transferase, N-terminal domain CKQ55_RS21840 PF14497 Glutathione S-transferase, C-terminal domain CKQ55_RS21845 PF01494 FAD binding domain CKQ55_RS21850 PF01207 Dihydrouridine synthase (Dus) CKQ55_RS21855 PF13737 Transposase DDE domain CKQ55_RS21860 PF00874 PRD domain CKQ55_RS21860 PF03123 CAT RNA binding domain CKQ55_RS21865 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CKQ55_RS21865 PF00367 phosphotransferase system, EIIB CKQ55_RS21865 PF02378 Phosphotransferase system, EIIC CKQ55_RS21870 PF00232 Glycosyl hydrolase family 1 CKQ55_RS21875 PF08241 Methyltransferase domain CKQ55_RS21880 PF02321 Outer membrane efflux protein CKQ55_RS21885 PF09335 SNARE associated Golgi protein CKQ55_RS21890 PF04893 Yip1 domain CKQ55_RS21895 PF00768 D-alanyl-D-alanine carboxypeptidase CKQ55_RS21905 PF01565 FAD binding domain CKQ55_RS21905 PF09330 D-lactate dehydrogenase, membrane binding CKQ55_RS21910 PF00933 Glycosyl hydrolase family 3 N terminal domain CKQ55_RS21910 PF14310 Fibronectin type III-like domain CKQ55_RS21910 PF01915 Glycosyl hydrolase family 3 C-terminal domain CKQ55_RS21915 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CKQ55_RS21920 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS21925 PF00005 ABC transporter CKQ55_RS21930 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS21940 PF13411 MerR HTH family regulatory protein CKQ55_RS21945 PF07694 5TMR of 5TMR-LYT CKQ55_RS21945 PF06580 Histidine kinase CKQ55_RS21950 PF00072 Response regulator receiver domain CKQ55_RS21950 PF04397 LytTr DNA-binding domain CKQ55_RS21955 PF07308 Protein of unknown function (DUF1456) CKQ55_RS21960 PF06998 Protein of unknown function (DUF1307) CKQ55_RS21965 PF09334 tRNA synthetases class I (M) CKQ55_RS21965 PF01588 Putative tRNA binding domain CKQ55_RS21970 PF10609 NUBPL iron-transfer P-loop NTPase CKQ55_RS21980 PF11776 Nickel/cobalt transporter regulator CKQ55_RS21985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS21985 PF03466 LysR substrate binding domain CKQ55_RS21990 PF00860 Permease family CKQ55_RS21995 PF13382 Adenine deaminase C-terminal domain CKQ55_RS21995 PF01979 Amidohydrolase family CKQ55_RS22000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS22000 PF03466 LysR substrate binding domain CKQ55_RS22010 PF14863 Alkyl sulfatase dimerisation CKQ55_RS22010 PF14864 Alkyl sulfatase C-terminal CKQ55_RS22010 PF00753 Metallo-beta-lactamase superfamily CKQ55_RS22020 PF13737 Transposase DDE domain CKQ55_RS22060 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS22060 PF00239 Resolvase, N terminal domain CKQ55_RS22090 PF02110 Hydroxyethylthiazole kinase family CKQ55_RS22095 PF08543 Phosphomethylpyrimidine kinase CKQ55_RS22100 PF07702 UTRA domain CKQ55_RS22100 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS22105 PF00294 pfkB family carbohydrate kinase CKQ55_RS22110 PF03747 ADP-ribosylglycohydrolase CKQ55_RS22115 PF03825 Nucleoside H+ symporter CKQ55_RS22120 PF01791 DeoC/LacD family aldolase CKQ55_RS22130 PF00106 short chain dehydrogenase CKQ55_RS22135 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS22140 PF04198 Putative sugar-binding domain CKQ55_RS22145 PF01232 Mannitol dehydrogenase Rossmann domain CKQ55_RS22145 PF08125 Mannitol dehydrogenase C-terminal domain CKQ55_RS22150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS22150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS22155 PF07690 Major Facilitator Superfamily CKQ55_RS22160 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS22165 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS22165 PF13378 Enolase C-terminal domain-like CKQ55_RS22170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS22175 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS22180 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS22180 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS22185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS22185 PF00005 ABC transporter CKQ55_RS22190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS22190 PF00005 ABC transporter CKQ55_RS22205 PF00781 Diacylglycerol kinase catalytic domain CKQ55_RS22210 PF00589 Phage integrase family CKQ55_RS22210 PF02899 Phage integrase, N-terminal SAM-like domain CKQ55_RS22245 PF05840 Bacteriophage replication gene A protein (GPA) CKQ55_RS22255 PF02661 Fic/DOC family CKQ55_RS22255 PF17841 BID domain of Bartonella effector protein (Bep) CKQ55_RS22410 PF04606 Ogr/Delta-like zinc finger CKQ55_RS22415 PF16325 Peptidase family U32 C-terminal domain CKQ55_RS22415 PF01136 Peptidase family U32 CKQ55_RS22420 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS22420 PF00072 Response regulator receiver domain CKQ55_RS22425 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS22425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS22425 PF00672 HAMP domain CKQ55_RS22430 PF07690 Major Facilitator Superfamily CKQ55_RS22435 PF00873 AcrB/AcrD/AcrF family CKQ55_RS22440 PF00873 AcrB/AcrD/AcrF family CKQ55_RS22445 PF13533 Biotin-lipoyl like CKQ55_RS22455 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS22460 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS22465 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS22470 PF01037 Lrp/AsnC ligand binding domain CKQ55_RS22480 PF00561 alpha/beta hydrolase fold CKQ55_RS22485 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS22485 PF03472 Autoinducer binding domain CKQ55_RS22490 PF00561 alpha/beta hydrolase fold CKQ55_RS22495 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS22500 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS22500 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS22505 PF00005 ABC transporter CKQ55_RS22505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS22510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS22510 PF00005 ABC transporter CKQ55_RS22515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS22520 PF00375 Sodium:dicarboxylate symporter family CKQ55_RS22530 PF00072 Response regulator receiver domain CKQ55_RS22530 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS22535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS22535 PF13493 Domain of unknown function (DUF4118) CKQ55_RS22535 PF13492 GAF domain CKQ55_RS22535 PF02702 Osmosensitive K+ channel His kinase sensor domain CKQ55_RS22535 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS22540 PF00285 Citrate synthase, C-terminal domain CKQ55_RS22545 PF00012 Hsp70 protein CKQ55_RS22550 PF00730 HhH-GPD superfamily base excision DNA repair protein CKQ55_RS22550 PF06029 AlkA N-terminal domain CKQ55_RS22555 PF00485 Phosphoribulokinase / Uridine kinase family CKQ55_RS22560 PF00692 dUTPase CKQ55_RS22565 PF05170 AsmA family CKQ55_RS22570 PF03471 Transporter associated domain CKQ55_RS22570 PF03741 Integral membrane protein TerC family CKQ55_RS22570 PF00571 CBS domain CKQ55_RS22575 PF00483 Nucleotidyl transferase CKQ55_RS22580 PF01569 PAP2 superfamily CKQ55_RS22590 PF14052 Capsule assembly protein Wzi CKQ55_RS22595 PF02563 Polysaccharide biosynthesis/export protein CKQ55_RS22595 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CKQ55_RS22595 PF10531 SLBB domain CKQ55_RS22600 PF01451 Low molecular weight phosphotyrosine protein phosphatase CKQ55_RS22605 PF13614 AAA domain CKQ55_RS22605 PF02706 Chain length determinant protein CKQ55_RS22605 PF13807 G-rich domain on putative tyrosine kinase CKQ55_RS22610 PF02397 Bacterial sugar transferase CKQ55_RS22615 PF00535 Glycosyl transferase family 2 CKQ55_RS22625 PF00535 Glycosyl transferase family 2 CKQ55_RS22630 PF00534 Glycosyl transferases group 1 CKQ55_RS22655 PF14667 Polysaccharide biosynthesis C-terminal domain CKQ55_RS22660 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CKQ55_RS22660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CKQ55_RS22665 PF16363 GDP-mannose 4,6 dehydratase CKQ55_RS22670 PF00483 Nucleotidyl transferase CKQ55_RS22675 PF04321 RmlD substrate binding domain CKQ55_RS22680 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CKQ55_RS22685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CKQ55_RS22685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CKQ55_RS22685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CKQ55_RS22690 PF01370 NAD dependent epimerase/dehydratase family CKQ55_RS22695 PF01061 ABC-2 type transporter CKQ55_RS22700 PF00005 ABC transporter CKQ55_RS22710 PF03275 UDP-galactopyranose mutase CKQ55_RS22725 PF00535 Glycosyl transferase family 2 CKQ55_RS22730 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CKQ55_RS22730 PF01502 Phosphoribosyl-AMP cyclohydrolase CKQ55_RS22735 PF00977 Histidine biosynthesis protein CKQ55_RS22740 PF00977 Histidine biosynthesis protein CKQ55_RS22745 PF00117 Glutamine amidotransferase class-I CKQ55_RS22750 PF08645 Polynucleotide kinase 3 phosphatase CKQ55_RS22750 PF00475 Imidazoleglycerol-phosphate dehydratase CKQ55_RS22755 PF00155 Aminotransferase class I and II CKQ55_RS22760 PF00815 Histidinol dehydrogenase CKQ55_RS22765 PF01634 ATP phosphoribosyltransferase CKQ55_RS22765 PF08029 HisG, C-terminal domain CKQ55_RS22770 PF01370 NAD dependent epimerase/dehydratase family CKQ55_RS22775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS22775 PF03466 LysR substrate binding domain CKQ55_RS22780 PF13520 Amino acid permease CKQ55_RS22785 PF04891 NifQ CKQ55_RS22790 PF02579 Dinitrogenase iron-molybdenum cofactor CKQ55_RS22790 PF04055 Radical SAM superfamily CKQ55_RS22795 PF13185 GAF domain CKQ55_RS22795 PF00158 Sigma-54 interaction domain CKQ55_RS22795 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS22800 PF00989 PAS fold CKQ55_RS22805 PF00258 Flavodoxin CKQ55_RS22810 PF00639 PPIC-type PPIASE domain CKQ55_RS22815 PF04319 NifZ domain CKQ55_RS22820 PF03206 Nitrogen fixation protein NifW CKQ55_RS22825 PF00682 HMGL-like CKQ55_RS22830 PF00266 Aminotransferase class-V CKQ55_RS22835 PF04324 BFD-like [2Fe-2S] binding domain CKQ55_RS22835 PF01106 NifU-like domain CKQ55_RS22835 PF01592 NifU-like N terminal domain CKQ55_RS22840 PF02579 Dinitrogenase iron-molybdenum cofactor CKQ55_RS22845 PF00148 Nitrogenase component 1 type Oxidoreductase CKQ55_RS22850 PF00148 Nitrogenase component 1 type Oxidoreductase CKQ55_RS22855 PF02579 Dinitrogenase iron-molybdenum cofactor CKQ55_RS22860 PF06988 NifT/FixU protein CKQ55_RS22865 PF00148 Nitrogenase component 1 type Oxidoreductase CKQ55_RS22865 PF11844 Domain of unknown function (DUF3364) CKQ55_RS22870 PF00148 Nitrogenase component 1 type Oxidoreductase CKQ55_RS22875 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CKQ55_RS22880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS22880 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CKQ55_RS22880 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CKQ55_RS22880 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CKQ55_RS22880 PF12838 4Fe-4S dicluster domain CKQ55_RS22880 PF10371 Domain of unknown function CKQ55_RS22885 PF01022 Bacterial regulatory protein, arsR family CKQ55_RS22890 PF00009 Elongation factor Tu GTP binding domain CKQ55_RS22890 PF03764 Elongation factor G, domain IV CKQ55_RS22890 PF00679 Elongation factor G C-terminus CKQ55_RS22890 PF03144 Elongation factor Tu domain 2 CKQ55_RS22890 PF14492 Elongation Factor G, domain II CKQ55_RS22895 PF00929 Exonuclease CKQ55_RS22895 PF08411 Exonuclease C-terminal CKQ55_RS22900 PF00768 D-alanyl-D-alanine carboxypeptidase CKQ55_RS22900 PF07943 Penicillin-binding protein 5, C-terminal domain CKQ55_RS22905 PF14052 Capsule assembly protein Wzi CKQ55_RS22910 PF01610 Transposase CKQ55_RS22910 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CKQ55_RS22910 PF13542 Helix-turn-helix domain of transposase family ISL3 CKQ55_RS22915 PF06445 GyrI-like small molecule binding domain CKQ55_RS22920 PF04632 Fusaric acid resistance protein family CKQ55_RS22925 PF04363 Protein of unknown function (DUF496) CKQ55_RS22935 PF02654 Cobalamin-5-phosphate synthase CKQ55_RS22940 PF05221 S-adenosyl-L-homocysteine hydrolase CKQ55_RS22940 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CKQ55_RS22950 PF00083 Sugar (and other) transporter CKQ55_RS22955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS22955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS22960 PF00381 PTS HPr component phosphorylation site CKQ55_RS22960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS22965 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS22970 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS22975 PF14552 Tautomerase enzyme CKQ55_RS22980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS22980 PF03466 LysR substrate binding domain CKQ55_RS22990 PF07690 Major Facilitator Superfamily CKQ55_RS22990 PF00083 Sugar (and other) transporter CKQ55_RS23000 PF00563 EAL domain CKQ55_RS23000 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS23000 PF03707 Bacterial signalling protein N terminal repeat CKQ55_RS23000 PF13188 PAS domain CKQ55_RS23005 PF09313 Domain of unknown function (DUF1971) CKQ55_RS23010 PF08956 Domain of unknown function (DUF1869) CKQ55_RS23015 PF07702 UTRA domain CKQ55_RS23015 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS23020 PF00367 phosphotransferase system, EIIB CKQ55_RS23020 PF02378 Phosphotransferase system, EIIC CKQ55_RS23025 PF02056 Family 4 glycosyl hydrolase CKQ55_RS23025 PF11975 Family 4 glycosyl hydrolase C-terminal domain CKQ55_RS23035 PF00419 Fimbrial protein CKQ55_RS23035 PF09160 FimH, mannose binding CKQ55_RS23045 PF00419 Fimbrial protein CKQ55_RS23050 PF13954 PapC N-terminal domain CKQ55_RS23050 PF00577 Outer membrane usher protein CKQ55_RS23050 PF13953 PapC C-terminal domain CKQ55_RS23055 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS23055 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS23060 PF00419 Fimbrial protein CKQ55_RS23065 PF00419 Fimbrial protein CKQ55_RS23070 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS23070 PF00072 Response regulator receiver domain CKQ55_RS23090 PF03466 LysR substrate binding domain CKQ55_RS23090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS23095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS23095 PF03466 LysR substrate binding domain CKQ55_RS23100 PF03734 L,D-transpeptidase catalytic domain CKQ55_RS23100 PF17969 L,D-transpeptidase C-terminal domain CKQ55_RS23110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS23110 PF03466 LysR substrate binding domain CKQ55_RS23115 PF00248 Aldo/keto reductase family CKQ55_RS23120 PF03466 LysR substrate binding domain CKQ55_RS23120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS23140 PF03237 Terminase-like family CKQ55_RS23200 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS23200 PF13378 Enolase C-terminal domain-like CKQ55_RS23215 PF00248 Aldo/keto reductase family CKQ55_RS23225 PF07690 Major Facilitator Superfamily CKQ55_RS23255 PF01554 MatE CKQ55_RS23265 PF01048 Phosphorylase superfamily CKQ55_RS23265 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CKQ55_RS23285 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CKQ55_RS23295 PF00873 AcrB/AcrD/AcrF family CKQ55_RS23300 PF13533 Biotin-lipoyl like CKQ55_RS23305 PF00582 Universal stress protein family CKQ55_RS23310 PF00689 Cation transporting ATPase, C-terminus CKQ55_RS23310 PF00690 Cation transporter/ATPase, N-terminus CKQ55_RS23315 PF00756 Putative esterase CKQ55_RS23325 PF03466 LysR substrate binding domain CKQ55_RS23325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS23330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS23330 PF03466 LysR substrate binding domain CKQ55_RS23335 PF01042 Endoribonuclease L-PSP CKQ55_RS23340 PF00550 Phosphopantetheine attachment site CKQ55_RS23340 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS23340 PF14765 Polyketide synthase dehydratase CKQ55_RS23340 PF09277 Erythronolide synthase, docking CKQ55_RS23340 PF08990 Erythronolide synthase docking CKQ55_RS23340 PF00698 Acyl transferase domain CKQ55_RS23340 PF16197 Ketoacyl-synthetase C-terminal extension CKQ55_RS23340 PF00109 Beta-ketoacyl synthase, N-terminal domain CKQ55_RS23340 PF08659 KR domain CKQ55_RS23340 PF02801 Beta-ketoacyl synthase, C-terminal domain CKQ55_RS23350 PF06167 Glucose-regulated metallo-peptidase M90 CKQ55_RS23365 PF00535 Glycosyl transferase family 2 CKQ55_RS23375 PF00267 Gram-negative porin CKQ55_RS23385 PF01966 HD domain CKQ55_RS23390 PF18284 DNA methylase N-terminal domain CKQ55_RS23390 PF00145 C-5 cytosine-specific DNA methylase CKQ55_RS23395 PF03852 DNA mismatch endonuclease Vsr CKQ55_RS23400 PF00892 EamA-like transporter family CKQ55_RS23405 PF05661 Protein of unknown function (DUF808) CKQ55_RS23410 PF09926 Uncharacterized small protein (DUF2158) CKQ55_RS23415 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS23415 PF17151 Periplasmic sensor domain CKQ55_RS23420 PF10733 Protein of unknown function (DUF2525) CKQ55_RS23425 PF10781 Dextransucrase DSRB CKQ55_RS23430 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS23440 PF13987 YedD-like protein CKQ55_RS23445 PF00128 Alpha amylase, catalytic domain CKQ55_RS23445 PF02806 Alpha amylase, C-terminal all-beta domain CKQ55_RS23450 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS23455 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS23460 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS23465 PF00005 ABC transporter CKQ55_RS23470 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS23470 PF03472 Autoinducer binding domain CKQ55_RS23475 PF10769 Protein of unknown function (DUF2594) CKQ55_RS23480 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS23480 PF00072 Response regulator receiver domain CKQ55_RS23485 PF02151 UvrB/uvrC motif CKQ55_RS23485 PF01541 GIY-YIG catalytic domain CKQ55_RS23485 PF08459 UvrC Helix-hairpin-helix N-terminal CKQ55_RS23490 PF01066 CDP-alcohol phosphatidyltransferase CKQ55_RS23510 PF00701 Dihydrodipicolinate synthetase family CKQ55_RS23515 PF03695 Uncharacterised protein family (UPF0149) CKQ55_RS23515 PF02810 SEC-C motif CKQ55_RS23520 PF03222 Tryptophan/tyrosine permease family CKQ55_RS23525 PF10678 Protein of unknown function (DUF2492) CKQ55_RS23530 PF00210 Ferritin-like domain CKQ55_RS23540 PF07690 Major Facilitator Superfamily CKQ55_RS23550 PF10964 Protein of unknown function (DUF2766) CKQ55_RS23560 PF00210 Ferritin-like domain CKQ55_RS23570 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CKQ55_RS23575 PF00005 ABC transporter CKQ55_RS23580 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS23585 PF02358 Trehalose-phosphatase CKQ55_RS23590 PF00982 Glycosyltransferase family 20 CKQ55_RS23595 PF00582 Universal stress protein family CKQ55_RS23610 PF07470 Glycosyl Hydrolase Family 88 CKQ55_RS23615 PF05746 DALR anticodon binding domain CKQ55_RS23615 PF00750 tRNA synthetases class I (R) CKQ55_RS23615 PF03485 Arginyl tRNA synthetase N terminal domain CKQ55_RS23620 PF06185 YecM protein CKQ55_RS23625 PF03932 CutC family CKQ55_RS23635 PF08003 Protein of unknown function (DUF1698) CKQ55_RS23640 PF13649 Methyltransferase domain CKQ55_RS23645 PF01124 MAPEG family CKQ55_RS23650 PF01904 Protein of unknown function DUF72 CKQ55_RS23655 PF00857 Isochorismatase family CKQ55_RS23660 PF02938 GAD domain CKQ55_RS23660 PF00152 tRNA synthetases class II (D, K and N) CKQ55_RS23660 PF01336 OB-fold nucleic acid binding domain CKQ55_RS23665 PF00293 NUDIX domain CKQ55_RS23670 PF01709 Transcriptional regulator CKQ55_RS23675 PF02075 Crossover junction endodeoxyribonuclease RuvC CKQ55_RS23680 PF01330 RuvA N terminal domain CKQ55_RS23680 PF07499 RuvA, C-terminal domain CKQ55_RS23685 PF17864 RuvB AAA lid domain CKQ55_RS23685 PF05491 RuvB C-terminal winged helix domain CKQ55_RS23685 PF05496 Holliday junction DNA helicase RuvB P-loop domain CKQ55_RS23690 PF00950 ABC 3 transport family CKQ55_RS23695 PF00005 ABC transporter CKQ55_RS23700 PF01297 Zinc-uptake complex component A periplasmic CKQ55_RS23705 PF08525 Opacity-associated protein A N-terminal motif CKQ55_RS23705 PF01551 Peptidase family M23 CKQ55_RS23705 PF01476 LysM domain CKQ55_RS23710 PF03279 Bacterial lipid A biosynthesis acyltransferase CKQ55_RS23715 PF00072 Response regulator receiver domain CKQ55_RS23720 PF00390 Malic enzyme, N-terminal domain CKQ55_RS23720 PF03949 Malic enzyme, NAD binding domain CKQ55_RS23725 PF03547 Membrane transport protein CKQ55_RS23730 PF03390 2-hydroxycarboxylate transporter family CKQ55_RS23735 PF00224 Pyruvate kinase, barrel domain CKQ55_RS23735 PF02887 Pyruvate kinase, alpha/beta domain CKQ55_RS23740 PF01380 SIS domain CKQ55_RS23740 PF01418 Helix-turn-helix domain, rpiR family CKQ55_RS23745 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CKQ55_RS23745 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CKQ55_RS23750 PF00920 Dehydratase family CKQ55_RS23755 PF01081 KDPG and KHG aldolase CKQ55_RS23760 PF02222 ATP-grasp domain CKQ55_RS23765 PF07130 YebG protein CKQ55_RS23770 PF04391 Protein of unknown function (DUF533) CKQ55_RS23775 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CKQ55_RS23775 PF00326 Prolyl oligopeptidase family CKQ55_RS23780 PF00929 Exonuclease CKQ55_RS23785 PF06440 DNA polymerase III, theta subunit CKQ55_RS23790 PF04234 CopC domain CKQ55_RS23795 PF05425 Copper resistance protein D CKQ55_RS23800 PF10709 Protein of unknown function (DUF2511) CKQ55_RS23830 PF04393 Protein of unknown function (DUF535) CKQ55_RS23835 PF00149 Calcineurin-like phosphoesterase CKQ55_RS23840 PF07358 Protein of unknown function (DUF1482) CKQ55_RS23845 PF07351 Protein of unknown function (DUF1480) CKQ55_RS23850 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CKQ55_RS23850 PF01189 16S rRNA methyltransferase RsmB/F CKQ55_RS23850 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CKQ55_RS23855 PF02470 MlaD protein CKQ55_RS23860 PF04403 Paraquat-inducible protein A CKQ55_RS23865 PF13185 GAF domain CKQ55_RS23870 PF04352 ProQ/FINO family CKQ55_RS23870 PF17516 ProQ C-terminal domain CKQ55_RS23875 PF11818 C-terminal domain of tail specific protease (DUF3340) CKQ55_RS23875 PF17804 Tail specific protease N-terminal domain CKQ55_RS23875 PF03572 Peptidase family S41 CKQ55_RS23875 PF00595 PDZ domain CKQ55_RS23880 PF01435 Peptidase family M48 CKQ55_RS23885 PF07690 Major Facilitator Superfamily CKQ55_RS23895 PF13996 YobH-like protein CKQ55_RS23900 PF13998 MgrB protein CKQ55_RS23905 PF13974 YebO-like protein CKQ55_RS23915 PF10736 Protein of unknown function (DUF2627) CKQ55_RS23920 PF00313 'Cold-shock' DNA-binding domain CKQ55_RS23925 PF00905 Penicillin binding protein transpeptidase domain CKQ55_RS23925 PF03717 Penicillin-binding Protein dimerisation domain CKQ55_RS23930 PF13847 Methyltransferase domain CKQ55_RS23935 PF02659 Putative manganese efflux pump CKQ55_RS23945 PF06173 Protein of unknown function (DUF986) CKQ55_RS23950 PF03613 PTS system mannose/fructose/sorbose family IID component CKQ55_RS23955 PF03609 PTS system sorbose-specific iic component CKQ55_RS23960 PF03610 PTS system fructose IIA component CKQ55_RS23960 PF03830 PTS system sorbose subfamily IIB component CKQ55_RS23970 PF00563 EAL domain CKQ55_RS23970 PF12792 CSS motif domain associated with EAL CKQ55_RS23975 PF03313 Serine dehydratase alpha chain CKQ55_RS23975 PF03315 Serine dehydratase beta chain CKQ55_RS23980 PF00293 NUDIX domain CKQ55_RS23985 PF00425 chorismate binding enzyme CKQ55_RS23985 PF04715 Anthranilate synthase component I, N terminal region CKQ55_RS23990 PF03701 Uncharacterised protein family (UPF0181) CKQ55_RS23995 PF05426 Alginate lyase CKQ55_RS23995 PF07940 Heparinase II/III-like protein CKQ55_RS24005 PF01547 Bacterial extracellular solute-binding protein CKQ55_RS24010 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS24015 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS24020 PF00005 ABC transporter CKQ55_RS24020 PF17912 MalK OB fold domain CKQ55_RS24020 PF03459 TOBE domain CKQ55_RS24030 PF01042 Endoribonuclease L-PSP CKQ55_RS24035 PF13307 Helicase C-terminal domain CKQ55_RS24035 PF04851 Type III restriction enzyme, res subunit CKQ55_RS24040 PF00814 Glycoprotease family CKQ55_RS24045 PF03843 Outer membrane lipoprotein Slp family CKQ55_RS24055 PF00501 AMP-binding enzyme CKQ55_RS24055 PF13193 AMP-binding enzyme C-terminal domain CKQ55_RS24060 PF00570 HRDC domain CKQ55_RS24060 PF01612 3'-5' exonuclease CKQ55_RS24065 PF03776 Septum formation topological specificity factor MinE CKQ55_RS24070 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CKQ55_RS24075 PF05209 Septum formation inhibitor MinC, N-terminal domain CKQ55_RS24075 PF03775 Septum formation inhibitor MinC, C-terminal domain CKQ55_RS24080 PF05166 YcgL domain CKQ55_RS24085 PF01557 Fumarylacetoacetate (FAA) hydrolase family CKQ55_RS24090 PF03692 Putative zinc- or iron-chelating domain CKQ55_RS24100 PF02600 Disulfide bond formation protein DsbB CKQ55_RS24105 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CKQ55_RS24110 PF07840 FadR C-terminal domain CKQ55_RS24110 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS24115 PF04293 SpoVR like protein CKQ55_RS24120 PF01266 FAD dependent oxidoreductase CKQ55_RS24125 PF00842 Alanine racemase, C-terminal domain CKQ55_RS24125 PF01168 Alanine racemase, N-terminal domain CKQ55_RS24130 PF00999 Sodium/hydrogen exchanger family CKQ55_RS24130 PF02080 TrkA-C domain CKQ55_RS24130 PF03471 Transporter associated domain CKQ55_RS24135 PF02016 LD-carboxypeptidase N-terminal domain CKQ55_RS24135 PF17676 LD-carboxypeptidase C-terminal domain CKQ55_RS24140 PF01464 Transglycosylase SLT domain CKQ55_RS24145 PF01204 Trehalase CKQ55_RS24160 PF00933 Glycosyl hydrolase family 3 N terminal domain CKQ55_RS24160 PF14310 Fibronectin type III-like domain CKQ55_RS24160 PF01915 Glycosyl hydrolase family 3 C-terminal domain CKQ55_RS24170 PF14403 Circularly permuted ATP-grasp type 2 CKQ55_RS24195 PF07690 Major Facilitator Superfamily CKQ55_RS24210 PF00296 Luciferase-like monooxygenase CKQ55_RS24220 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS24225 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS24230 PF00571 CBS domain CKQ55_RS24230 PF00005 ABC transporter CKQ55_RS24235 PF00849 RNA pseudouridylate synthase CKQ55_RS24240 PF03466 LysR substrate binding domain CKQ55_RS24240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS24245 PF01293 Phosphoenolpyruvate carboxykinase CKQ55_RS24255 PF08212 Lipocalin-like domain CKQ55_RS24260 PF00576 HIUase/Transthyretin family CKQ55_RS24265 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS24265 PF00381 PTS HPr component phosphorylation site CKQ55_RS24270 PF00083 Sugar (and other) transporter CKQ55_RS24275 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CKQ55_RS24275 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CKQ55_RS24275 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS24275 PF01799 [2Fe-2S] binding domain CKQ55_RS24280 PF01799 [2Fe-2S] binding domain CKQ55_RS24280 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS24285 PF12804 MobA-like NTP transferase domain CKQ55_RS24295 PF00860 Permease family CKQ55_RS24300 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS24300 PF13247 4Fe-4S dicluster domain CKQ55_RS24300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CKQ55_RS24305 PF13247 4Fe-4S dicluster domain CKQ55_RS24310 PF01979 Amidohydrolase family CKQ55_RS24315 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CKQ55_RS24315 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS24325 PF13478 XdhC Rossmann domain CKQ55_RS24325 PF02625 XdhC and CoxI family CKQ55_RS24330 PF00696 Amino acid kinase family CKQ55_RS24335 PF01979 Amidohydrolase family CKQ55_RS24340 PF01546 Peptidase family M20/M25/M40 CKQ55_RS24340 PF07687 Peptidase dimerisation domain CKQ55_RS24345 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS24350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CKQ55_RS24350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CKQ55_RS24360 PF00158 Sigma-54 interaction domain CKQ55_RS24360 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS24360 PF13188 PAS domain CKQ55_RS24365 PF02661 Fic/DOC family CKQ55_RS24370 PF13356 Arm DNA-binding domain CKQ55_RS24370 PF00589 Phage integrase family CKQ55_RS24375 PF01926 50S ribosome-binding GTPase CKQ55_RS24375 PF06071 Protein of unknown function (DUF933) CKQ55_RS24380 PF01195 Peptidyl-tRNA hydrolase CKQ55_RS24385 PF10762 Protein of unknown function (DUF2583) CKQ55_RS24395 PF01740 STAS domain CKQ55_RS24395 PF00916 Sulfate permease family CKQ55_RS24400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CKQ55_RS24400 PF14572 Phosphoribosyl synthetase-associated domain CKQ55_RS24410 PF08544 GHMP kinases C terminal CKQ55_RS24410 PF00288 GHMP kinases N terminal domain CKQ55_RS24415 PF03550 Outer membrane lipoprotein LolB CKQ55_RS24420 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CKQ55_RS24420 PF01488 Shikimate / quinate 5-dehydrogenase CKQ55_RS24420 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CKQ55_RS24425 PF00472 RF-1 domain CKQ55_RS24425 PF03462 PCRF domain CKQ55_RS24430 PF13847 Methyltransferase domain CKQ55_RS24430 PF17827 PrmC N-terminal domain CKQ55_RS24435 PF04247 Invasion gene expression up-regulator, SirB CKQ55_RS24440 PF13369 Transglutaminase-like superfamily CKQ55_RS24445 PF00793 DAHP synthetase I family CKQ55_RS24450 PF01699 Sodium/calcium exchanger protein CKQ55_RS24455 PF06150 ChaB CKQ55_RS24460 PF04752 ChaC-like protein CKQ55_RS24470 PF02635 DsrE/DsrF-like family CKQ55_RS24475 PF08376 Nitrate and nitrite sensing CKQ55_RS24475 PF03861 ANTAR domain CKQ55_RS24485 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS24490 PF00005 ABC transporter CKQ55_RS24495 PF18267 Rubredoxin NAD+ reductase C-terminal domain CKQ55_RS24495 PF13806 Rieske-like [2Fe-2S] domain CKQ55_RS24495 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS24495 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CKQ55_RS24495 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CKQ55_RS24495 PF04324 BFD-like [2Fe-2S] binding domain CKQ55_RS24500 PF04324 BFD-like [2Fe-2S] binding domain CKQ55_RS24500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CKQ55_RS24500 PF00384 Molybdopterin oxidoreductase CKQ55_RS24500 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS24505 PF11924 Inverse autotransporter, beta-domain CKQ55_RS24510 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS24510 PF00072 Response regulator receiver domain CKQ55_RS24515 PF07730 Histidine kinase CKQ55_RS24515 PF00672 HAMP domain CKQ55_RS24515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS24515 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CKQ55_RS24520 PF07690 Major Facilitator Superfamily CKQ55_RS24525 PF00384 Molybdopterin oxidoreductase CKQ55_RS24525 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS24525 PF14710 Respiratory nitrate reductase alpha N-terminal CKQ55_RS24530 PF14711 Respiratory nitrate reductase beta C-terminal CKQ55_RS24530 PF13247 4Fe-4S dicluster domain CKQ55_RS24535 PF02613 Nitrate reductase delta subunit CKQ55_RS24540 PF02665 Nitrate reductase gamma subunit CKQ55_RS24575 PF01842 ACT domain CKQ55_RS24575 PF00551 Formyl transferase CKQ55_RS24580 PF02810 SEC-C motif CKQ55_RS24585 PF01734 Patatin-like phospholipase CKQ55_RS24590 PF00072 Response regulator receiver domain CKQ55_RS24595 PF00483 Nucleotidyl transferase CKQ55_RS24600 PF00816 H-NS histone family CKQ55_RS24610 PF00265 Thymidine kinase CKQ55_RS24615 PF00171 Aldehyde dehydrogenase family CKQ55_RS24615 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS24620 PF01914 MarC family integral membrane protein CKQ55_RS24630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS24635 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS24640 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS24640 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS24645 PF00005 ABC transporter CKQ55_RS24645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS24650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS24650 PF00005 ABC transporter CKQ55_RS24655 PF00027 Cyclic nucleotide-binding domain CKQ55_RS24655 PF00520 Ion transport protein CKQ55_RS24660 PF04269 Protein of unknown function, DUF440 CKQ55_RS24665 PF13396 Phospholipase_D-nuclease N-terminal CKQ55_RS24665 PF13091 PLD-like domain CKQ55_RS24675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CKQ55_RS24680 PF03795 YCII-related domain CKQ55_RS24725 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS24725 PF00239 Resolvase, N terminal domain CKQ55_RS24740 PF03544 Gram-negative bacterial TonB protein C-terminal CKQ55_RS24745 PF03881 Fructosamine kinase CKQ55_RS24750 PF11080 Endoribonuclease GhoS CKQ55_RS24755 PF00294 pfkB family carbohydrate kinase CKQ55_RS24760 PF04338 Protein of unknown function, DUF481 CKQ55_RS24775 PF03129 Anticodon binding domain CKQ55_RS24775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CKQ55_RS24775 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CKQ55_RS24775 PF02824 TGS domain CKQ55_RS24780 PF05198 Translation initiation factor IF-3, N-terminal domain CKQ55_RS24780 PF00707 Translation initiation factor IF-3, C-terminal domain CKQ55_RS24785 PF01632 Ribosomal protein L35 CKQ55_RS24790 PF00453 Ribosomal protein L20 CKQ55_RS24795 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CKQ55_RS24795 PF01409 tRNA synthetases class II core domain (F) CKQ55_RS24800 PF03483 B3/4 domain CKQ55_RS24800 PF03484 tRNA synthetase B5 domain CKQ55_RS24800 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CKQ55_RS24800 PF01588 Putative tRNA binding domain CKQ55_RS24800 PF03147 Ferredoxin-fold anticodon binding domain CKQ55_RS24805 PF00216 Bacterial DNA-binding protein CKQ55_RS24810 PF01032 FecCD transport family CKQ55_RS24815 PF03180 NLPA lipoprotein CKQ55_RS24820 PF00255 Glutathione peroxidase CKQ55_RS24825 PF00005 ABC transporter CKQ55_RS24830 PF00877 NlpC/P60 family CKQ55_RS24835 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CKQ55_RS24840 PF10636 Hemin uptake protein hemP CKQ55_RS24845 PF00793 DAHP synthetase I family CKQ55_RS24850 PF03618 Kinase/pyrophosphorylase CKQ55_RS24855 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CKQ55_RS24855 PF02896 PEP-utilising enzyme, TIM barrel domain CKQ55_RS24855 PF00391 PEP-utilising enzyme, mobile domain CKQ55_RS24865 PF01594 AI-2E family transporter CKQ55_RS24870 PF01565 FAD binding domain CKQ55_RS24870 PF02913 FAD linked oxidases, C-terminal domain CKQ55_RS24870 PF13183 4Fe-4S dicluster domain CKQ55_RS24875 PF03061 Thioesterase superfamily CKQ55_RS24880 PF04226 Transglycosylase associated protein CKQ55_RS24885 PF15977 Winged helix-turn-helix DNA binding CKQ55_RS24890 PF15977 Winged helix-turn-helix DNA binding CKQ55_RS24895 PF00419 Fimbrial protein CKQ55_RS24900 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS24900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS24905 PF13953 PapC C-terminal domain CKQ55_RS24905 PF00577 Outer membrane usher protein CKQ55_RS24905 PF13954 PapC N-terminal domain CKQ55_RS24920 PF01521 Iron-sulphur cluster biosynthesis CKQ55_RS24925 PF01458 Uncharacterized protein family (UPF0051) CKQ55_RS24930 PF00005 ABC transporter CKQ55_RS24935 PF01458 Uncharacterized protein family (UPF0051) CKQ55_RS24940 PF00266 Aminotransferase class-V CKQ55_RS24945 PF02657 Fe-S metabolism associated domain CKQ55_RS24950 PF03734 L,D-transpeptidase catalytic domain CKQ55_RS24950 PF01476 LysM domain CKQ55_RS24950 PF17969 L,D-transpeptidase C-terminal domain CKQ55_RS24955 PF04728 Lipoprotein leucine-zipper CKQ55_RS24960 PF02887 Pyruvate kinase, alpha/beta domain CKQ55_RS24960 PF00224 Pyruvate kinase, barrel domain CKQ55_RS24965 PF10965 Protein of unknown function (DUF2767) CKQ55_RS24975 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS24975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CKQ55_RS24980 PF07690 Major Facilitator Superfamily CKQ55_RS24985 PF08501 Shikimate dehydrogenase substrate binding domain CKQ55_RS24985 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CKQ55_RS24985 PF01488 Shikimate / quinate 5-dehydrogenase CKQ55_RS24995 PF00005 ABC transporter CKQ55_RS25000 PF01032 FecCD transport family CKQ55_RS25005 PF01497 Periplasmic binding protein CKQ55_RS25010 PF09339 IclR helix-turn-helix domain CKQ55_RS25010 PF01614 Bacterial transcriptional regulator CKQ55_RS25015 PF01494 FAD binding domain CKQ55_RS25020 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CKQ55_RS25025 PF12697 Alpha/beta hydrolase family CKQ55_RS25030 PF01557 Fumarylacetoacetate (FAA) hydrolase family CKQ55_RS25035 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CKQ55_RS25035 PF01118 Semialdehyde dehydrogenase, NAD binding domain CKQ55_RS25040 PF07836 DmpG-like communication domain CKQ55_RS25040 PF00682 HMGL-like CKQ55_RS25045 PF07690 Major Facilitator Superfamily CKQ55_RS25050 PF02578 Multi-copper polyphenol oxidoreductase laccase CKQ55_RS25065 PF05995 Cysteine dioxygenase type I CKQ55_RS25070 PF03466 LysR substrate binding domain CKQ55_RS25070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS25075 PF00296 Luciferase-like monooxygenase CKQ55_RS25080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CKQ55_RS25080 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CKQ55_RS25080 PF02770 Acyl-CoA dehydrogenase, middle domain CKQ55_RS25095 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS25100 PF00005 ABC transporter CKQ55_RS25105 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS25110 PF00005 ABC transporter CKQ55_RS25115 PF01032 FecCD transport family CKQ55_RS25120 PF01032 FecCD transport family CKQ55_RS25135 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS25140 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS25145 PF00005 ABC transporter CKQ55_RS25155 PF07687 Peptidase dimerisation domain CKQ55_RS25155 PF01546 Peptidase family M20/M25/M40 CKQ55_RS25160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CKQ55_RS25160 PF00384 Molybdopterin oxidoreductase CKQ55_RS25160 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS25165 PF02615 Malate/L-lactate dehydrogenase CKQ55_RS25175 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CKQ55_RS25205 PF04717 Type VI secretion system, phage-baseplate injector CKQ55_RS25205 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CKQ55_RS25205 PF13296 Putative type VI secretion system Rhs element Vgr CKQ55_RS25320 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS25325 PF08402 TOBE domain CKQ55_RS25325 PF00005 ABC transporter CKQ55_RS25330 PF00106 short chain dehydrogenase CKQ55_RS25335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS25335 PF00205 Thiamine pyrophosphate enzyme, central domain CKQ55_RS25335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CKQ55_RS25340 PF03306 Alpha-acetolactate decarboxylase CKQ55_RS25345 PF03466 LysR substrate binding domain CKQ55_RS25345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS25350 PF00313 'Cold-shock' DNA-binding domain CKQ55_RS25375 PF00589 Phage integrase family CKQ55_RS25385 PF00419 Fimbrial protein CKQ55_RS25390 PF00577 Outer membrane usher protein CKQ55_RS25390 PF13953 PapC C-terminal domain CKQ55_RS25390 PF13954 PapC N-terminal domain CKQ55_RS25395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CKQ55_RS25395 PF02753 Pili assembly chaperone PapD, C-terminal domain CKQ55_RS25405 PF00589 Phage integrase family CKQ55_RS25410 PF13360 PQQ-like domain CKQ55_RS25410 PF01011 PQQ enzyme repeat CKQ55_RS25415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS25415 PF00005 ABC transporter CKQ55_RS25420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS25420 PF00005 ABC transporter CKQ55_RS25425 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS25430 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS25435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS25445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CKQ55_RS25450 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS25450 PF00455 DeoR C terminal sensor domain CKQ55_RS25460 PF00484 Carbonic anhydrase CKQ55_RS25475 PF04076 Bacterial OB fold (BOF) protein CKQ55_RS25480 PF13454 FAD-NAD(P)-binding CKQ55_RS25495 PF04239 Protein of unknown function (DUF421) CKQ55_RS25500 PF02464 Competence-damaged protein CKQ55_RS25505 PF00106 short chain dehydrogenase CKQ55_RS25510 PF00128 Alpha amylase, catalytic domain CKQ55_RS25510 PF16657 Maltogenic Amylase, C-terminal domain CKQ55_RS25515 PF02322 Cytochrome bd terminal oxidase subunit II CKQ55_RS25520 PF01654 Cytochrome bd terminal oxidase subunit I CKQ55_RS25525 PF05067 Manganese containing catalase CKQ55_RS25530 PF05974 Domain of unknown function (DUF892) CKQ55_RS25535 PF05974 Domain of unknown function (DUF892) CKQ55_RS25540 PF10685 Stress-induced bacterial acidophilic repeat motif CKQ55_RS25560 PF01554 MatE CKQ55_RS25565 PF00677 Lumazine binding domain CKQ55_RS25575 PF07690 Major Facilitator Superfamily CKQ55_RS25580 PF03466 LysR substrate binding domain CKQ55_RS25580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS25585 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS25595 PF07690 Major Facilitator Superfamily CKQ55_RS25600 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CKQ55_RS25600 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CKQ55_RS25605 PF00877 NlpC/P60 family CKQ55_RS25610 PF00462 Glutaredoxin CKQ55_RS25615 PF00929 Exonuclease CKQ55_RS25620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CKQ55_RS25625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CKQ55_RS25630 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS25630 PF16925 Tetracyclin repressor-like, C-terminal domain CKQ55_RS25635 PF06945 Protein of unknown function (DUF1289) CKQ55_RS25640 PF00248 Aldo/keto reductase family CKQ55_RS25645 PF00080 Copper/zinc superoxide dismutase (SODC) CKQ55_RS25650 PF04632 Fusaric acid resistance protein family CKQ55_RS25655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS25655 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS25660 PF07869 Protein of unknown function (DUF1656) CKQ55_RS25665 PF01047 MarR family CKQ55_RS25670 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS25670 PF17158 Membrane-associated sensor, integral membrane domain CKQ55_RS25675 PF05433 Glycine zipper 2TM domain CKQ55_RS25680 PF03702 Anhydro-N-acetylmuramic acid kinase CKQ55_RS25685 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CKQ55_RS25690 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CKQ55_RS25690 PF01243 Pyridoxamine 5'-phosphate oxidase CKQ55_RS25695 PF00579 tRNA synthetases class I (W and Y) CKQ55_RS25700 PF08543 Phosphomethylpyrimidine kinase CKQ55_RS25705 PF02798 Glutathione S-transferase, N-terminal domain CKQ55_RS25705 PF00043 Glutathione S-transferase, C-terminal domain CKQ55_RS25710 PF00854 POT family CKQ55_RS25715 PF00730 HhH-GPD superfamily base excision DNA repair protein CKQ55_RS25715 PF00633 Helix-hairpin-helix motif CKQ55_RS25715 PF10576 Iron-sulfur binding domain of endonuclease III CKQ55_RS25720 PF02508 Rnf-Nqr subunit, membrane protein CKQ55_RS25725 PF04205 FMN-binding domain CKQ55_RS25730 PF03116 NQR2, RnfD, RnfE family CKQ55_RS25735 PF12838 4Fe-4S dicluster domain CKQ55_RS25735 PF13375 RnfC Barrel sandwich hybrid domain CKQ55_RS25735 PF10531 SLBB domain CKQ55_RS25735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CKQ55_RS25740 PF04060 Putative Fe-S cluster CKQ55_RS25745 PF02508 Rnf-Nqr subunit, membrane protein CKQ55_RS25750 PF10754 Protein of unknown function (DUF2569) CKQ55_RS25755 PF05321 Haemolysin expression modulating protein CKQ55_RS25760 PF00232 Glycosyl hydrolase family 1 CKQ55_RS25770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS25770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS25775 PF00962 Adenosine/AMP deaminase CKQ55_RS25780 PF03180 NLPA lipoprotein CKQ55_RS25785 PF01206 Sulfurtransferase TusA CKQ55_RS25790 PF04143 Sulphur transport CKQ55_RS25795 PF14001 YdfZ protein CKQ55_RS25800 PF00155 Aminotransferase class I and II CKQ55_RS25805 PF00367 phosphotransferase system, EIIB CKQ55_RS25805 PF02378 Phosphotransferase system, EIIC CKQ55_RS25810 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS25810 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CKQ55_RS25815 PF06097 Bacterial protein of unknown function (DUF945) CKQ55_RS25820 PF01238 Phosphomannose isomerase type I CKQ55_RS25825 PF05681 Fumarate hydratase (Fumerase) CKQ55_RS25825 PF05683 Fumarase C-terminus CKQ55_RS25830 PF10415 Fumarase C C-terminus CKQ55_RS25830 PF00206 Lyase CKQ55_RS25835 PF05472 DNA replication terminus site-binding protein (Ter protein) CKQ55_RS25840 PF00672 HAMP domain CKQ55_RS25840 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS25840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS25845 PF00589 Phage integrase family CKQ55_RS25845 PF12167 Arm DNA-binding domain CKQ55_RS25855 PF00255 Glutathione peroxidase CKQ55_RS25860 PF00563 EAL domain CKQ55_RS25860 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS25860 PF03707 Bacterial signalling protein N terminal repeat CKQ55_RS25865 PF00072 Response regulator receiver domain CKQ55_RS25865 PF00486 Transcriptional regulatory protein, C terminal CKQ55_RS25885 PF06942 GlpM protein CKQ55_RS25895 PF13520 Amino acid permease CKQ55_RS25900 PF07338 Protein of unknown function (DUF1471) CKQ55_RS25910 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CKQ55_RS25910 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CKQ55_RS25910 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CKQ55_RS25915 PF02233 NAD(P) transhydrogenase beta subunit CKQ55_RS25920 PF15930 Domain of unknown function CKQ55_RS25925 PF00582 Universal stress protein family CKQ55_RS25930 PF00325 Bacterial regulatory proteins, crp family CKQ55_RS25930 PF00027 Cyclic nucleotide-binding domain CKQ55_RS25935 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CKQ55_RS25935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CKQ55_RS25940 PF03806 AbgT putative transporter family CKQ55_RS25945 PF01546 Peptidase family M20/M25/M40 CKQ55_RS25950 PF07687 Peptidase dimerisation domain CKQ55_RS25950 PF01546 Peptidase family M20/M25/M40 CKQ55_RS25955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS25955 PF03466 LysR substrate binding domain CKQ55_RS25960 PF01713 Smr domain CKQ55_RS25965 PF09339 IclR helix-turn-helix domain CKQ55_RS25965 PF01614 Bacterial transcriptional regulator CKQ55_RS25970 PF01144 Coenzyme A transferase CKQ55_RS25975 PF01144 Coenzyme A transferase CKQ55_RS25980 PF02803 Thiolase, C-terminal domain CKQ55_RS25980 PF00108 Thiolase, N-terminal domain CKQ55_RS25985 PF10397 Adenylosuccinate lyase C-terminus CKQ55_RS25985 PF00206 Lyase CKQ55_RS25990 PF12146 Serine aminopeptidase, S33 CKQ55_RS25995 PF02627 Carboxymuconolactone decarboxylase family CKQ55_RS26000 PF05681 Fumarate hydratase (Fumerase) CKQ55_RS26000 PF05683 Fumarase C-terminus CKQ55_RS26010 PF00890 FAD binding domain CKQ55_RS26010 PF14537 Cytochrome c3 CKQ55_RS26015 PF02424 ApbE family CKQ55_RS26020 PF00072 Response regulator receiver domain CKQ55_RS26025 PF00989 PAS fold CKQ55_RS26025 PF17203 Single cache domain 3 CKQ55_RS26025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS26025 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CKQ55_RS26030 PF03466 LysR substrate binding domain CKQ55_RS26030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS26040 PF13580 SIS domain CKQ55_RS26045 PF06039 Malate:quinone oxidoreductase (Mqo) CKQ55_RS26050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS26050 PF03466 LysR substrate binding domain CKQ55_RS26055 PF00698 Acyl transferase domain CKQ55_RS26060 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CKQ55_RS26065 PF03547 Membrane transport protein CKQ55_RS26075 PF01039 Carboxyl transferase domain CKQ55_RS26080 PF06857 Malonate decarboxylase delta subunit (MdcD) CKQ55_RS26090 PF16957 Malonate decarboxylase, alpha subunit, transporter CKQ55_RS26095 PF01594 AI-2E family transporter CKQ55_RS26105 PF00893 Small Multidrug Resistance protein CKQ55_RS26110 PF00893 Small Multidrug Resistance protein CKQ55_RS26115 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS26115 PF03707 Bacterial signalling protein N terminal repeat CKQ55_RS26115 PF00563 EAL domain CKQ55_RS26120 PF00089 Trypsin CKQ55_RS26140 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CKQ55_RS26145 PF07690 Major Facilitator Superfamily CKQ55_RS26150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS26150 PF03466 LysR substrate binding domain CKQ55_RS26155 PF00480 ROK family CKQ55_RS26165 PF00654 Voltage gated chloride channel CKQ55_RS26170 PF02613 Nitrate reductase delta subunit CKQ55_RS26175 PF04976 DMSO reductase anchor subunit (DmsC) CKQ55_RS26180 PF12800 4Fe-4S binding domain CKQ55_RS26180 PF13247 4Fe-4S dicluster domain CKQ55_RS26190 PF06649 Protein of unknown function (DUF1161) CKQ55_RS26195 PF06788 Uncharacterised protein family (UPF0257) CKQ55_RS26200 PF13302 Acetyltransferase (GNAT) domain CKQ55_RS26205 PF06932 Protein of unknown function (DUF1283) CKQ55_RS26210 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CKQ55_RS26215 PF13378 Enolase C-terminal domain-like CKQ55_RS26215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS26220 PF00107 Zinc-binding dehydrogenase CKQ55_RS26220 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS26225 PF07690 Major Facilitator Superfamily CKQ55_RS26225 PF00083 Sugar (and other) transporter CKQ55_RS26230 PF08125 Mannitol dehydrogenase C-terminal domain CKQ55_RS26230 PF01232 Mannitol dehydrogenase Rossmann domain CKQ55_RS26235 PF00582 Universal stress protein family CKQ55_RS26240 PF07729 FCD domain CKQ55_RS26240 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS26245 PF00106 short chain dehydrogenase CKQ55_RS26250 PF01432 Peptidase family M3 CKQ55_RS26280 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CKQ55_RS26305 PF02463 RecF/RecN/SMC N terminal domain CKQ55_RS26310 PF01306 LacY proton/sugar symporter CKQ55_RS26315 PF02837 Glycosyl hydrolases family 2, sugar binding domain CKQ55_RS26315 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CKQ55_RS26315 PF00703 Glycosyl hydrolases family 2 CKQ55_RS26315 PF02929 Beta galactosidase small chain CKQ55_RS26315 PF16353 Domain of unknown function(DUF4981) CKQ55_RS26320 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS26330 PF00563 EAL domain CKQ55_RS26330 PF04940 Sensors of blue-light using FAD CKQ55_RS26350 PF08267 Cobalamin-independent synthase, N-terminal domain CKQ55_RS26350 PF01717 Cobalamin-independent synthase, Catalytic domain CKQ55_RS26365 PF01965 DJ-1/PfpI family CKQ55_RS26375 PF01717 Cobalamin-independent synthase, Catalytic domain CKQ55_RS26380 PF00158 Sigma-54 interaction domain CKQ55_RS26380 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS26380 PF13188 PAS domain CKQ55_RS26385 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS26390 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS26395 PF00005 ABC transporter CKQ55_RS26400 PF00005 ABC transporter CKQ55_RS26420 PF07690 Major Facilitator Superfamily CKQ55_RS26425 PF00892 EamA-like transporter family CKQ55_RS26430 PF13999 MarB protein CKQ55_RS26435 PF12833 Helix-turn-helix domain CKQ55_RS26440 PF01047 MarR family CKQ55_RS26445 PF01914 MarC family integral membrane protein CKQ55_RS26450 PF07690 Major Facilitator Superfamily CKQ55_RS26455 PF02567 Phenazine biosynthesis-like protein CKQ55_RS26460 PF02567 Phenazine biosynthesis-like protein CKQ55_RS26480 PF03741 Integral membrane protein TerC family CKQ55_RS26485 PF00701 Dihydrodipicolinate synthetase family CKQ55_RS26490 PF00465 Iron-containing alcohol dehydrogenase CKQ55_RS26495 PF07005 Sugar-binding N-terminal domain CKQ55_RS26495 PF17042 Nucleotide-binding C-terminal domain CKQ55_RS26500 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CKQ55_RS26505 PF00455 DeoR C terminal sensor domain CKQ55_RS26505 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS26510 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CKQ55_RS26510 PF00056 lactate/malate dehydrogenase, NAD binding domain CKQ55_RS26515 PF00583 Acetyltransferase (GNAT) family CKQ55_RS26520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS26520 PF03466 LysR substrate binding domain CKQ55_RS26525 PF00171 Aldehyde dehydrogenase family CKQ55_RS26530 PF04960 Glutaminase CKQ55_RS26535 PF13811 Domain of unknown function (DUF4186) CKQ55_RS26540 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS26550 PF01232 Mannitol dehydrogenase Rossmann domain CKQ55_RS26550 PF08125 Mannitol dehydrogenase C-terminal domain CKQ55_RS26565 PF13649 Methyltransferase domain CKQ55_RS26590 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS26590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS26595 PF00873 AcrB/AcrD/AcrF family CKQ55_RS26605 PF07690 Major Facilitator Superfamily CKQ55_RS26625 PF01810 LysE type translocator CKQ55_RS26635 PF06779 Uncharacterised MFS-type transporter YbfB CKQ55_RS26640 PF03466 LysR substrate binding domain CKQ55_RS26640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS26645 PF03060 Nitronate monooxygenase CKQ55_RS26650 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS26655 PF09383 NIL domain CKQ55_RS26655 PF00005 ABC transporter CKQ55_RS26660 PF03180 NLPA lipoprotein CKQ55_RS26670 PF09905 DNA-binding protein VF530 CKQ55_RS26685 PF07338 Protein of unknown function (DUF1471) CKQ55_RS26690 PF00005 ABC transporter CKQ55_RS26695 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS26700 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS26720 PF03807 NADP oxidoreductase coenzyme F420-dependent CKQ55_RS26720 PF14748 Pyrroline-5-carboxylate reductase dimerisation CKQ55_RS26725 PF12833 Helix-turn-helix domain CKQ55_RS26730 PF07690 Major Facilitator Superfamily CKQ55_RS26735 PF02789 Cytosol aminopeptidase family, N-terminal domain CKQ55_RS26735 PF00883 Cytosol aminopeptidase family, catalytic domain CKQ55_RS26740 PF01112 Asparaginase CKQ55_RS26745 PF02378 Phosphotransferase system, EIIC CKQ55_RS26760 PF00005 ABC transporter CKQ55_RS26765 PF01497 Periplasmic binding protein CKQ55_RS26770 PF01032 FecCD transport family CKQ55_RS26785 PF00267 Gram-negative porin CKQ55_RS26790 PF03611 PTS system sugar-specific permease component CKQ55_RS26795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS26795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CKQ55_RS26805 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CKQ55_RS26805 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CKQ55_RS26815 PF01791 DeoC/LacD family aldolase CKQ55_RS26820 PF00294 pfkB family carbohydrate kinase CKQ55_RS26830 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS26835 PF00005 ABC transporter CKQ55_RS26840 PF13407 Periplasmic binding protein domain CKQ55_RS26845 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS26855 PF01965 DJ-1/PfpI family CKQ55_RS26870 PF01738 Dienelactone hydrolase family CKQ55_RS26875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS26875 PF03466 LysR substrate binding domain CKQ55_RS26895 PF00561 alpha/beta hydrolase fold CKQ55_RS26900 PF04325 Protein of unknown function (DUF465) CKQ55_RS26905 PF02558 Ketopantoate reductase PanE/ApbA CKQ55_RS26905 PF08546 Ketopantoate reductase PanE/ApbA C terminal CKQ55_RS26925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CKQ55_RS26930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS26935 PF03611 PTS system sugar-specific permease component CKQ55_RS26940 PF13580 SIS domain CKQ55_RS26960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS26960 PF03466 LysR substrate binding domain CKQ55_RS26965 PF13847 Methyltransferase domain CKQ55_RS26965 PF03551 Transcriptional regulator PadR-like family CKQ55_RS26975 PF01638 HxlR-like helix-turn-helix CKQ55_RS26985 PF00557 Metallopeptidase family M24 CKQ55_RS26990 PF01266 FAD dependent oxidoreductase CKQ55_RS26995 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS26995 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CKQ55_RS26995 PF00384 Molybdopterin oxidoreductase CKQ55_RS27000 PF03916 Polysulphide reductase, NrfD CKQ55_RS27005 PF13247 4Fe-4S dicluster domain CKQ55_RS27010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS27010 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS27015 PF00072 Response regulator receiver domain CKQ55_RS27015 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS27025 PF00593 TonB dependent receptor CKQ55_RS27025 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS27035 PF01546 Peptidase family M20/M25/M40 CKQ55_RS27035 PF07687 Peptidase dimerisation domain CKQ55_RS27045 PF02126 Phosphotriesterase family CKQ55_RS27050 PF02653 Branched-chain amino acid transport system / permease component CKQ55_RS27055 PF00005 ABC transporter CKQ55_RS27060 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS27070 PF00294 pfkB family carbohydrate kinase CKQ55_RS27090 PF04972 BON domain CKQ55_RS27090 PF01476 LysM domain CKQ55_RS27095 PF00593 TonB dependent receptor CKQ55_RS27095 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS27100 PF13193 AMP-binding enzyme C-terminal domain CKQ55_RS27100 PF00501 AMP-binding enzyme CKQ55_RS27105 PF00975 Thioesterase domain CKQ55_RS27115 PF00668 Condensation domain CKQ55_RS27115 PF16197 Ketoacyl-synthetase C-terminal extension CKQ55_RS27115 PF02801 Beta-ketoacyl synthase, C-terminal domain CKQ55_RS27115 PF00550 Phosphopantetheine attachment site CKQ55_RS27115 PF00109 Beta-ketoacyl synthase, N-terminal domain CKQ55_RS27115 PF00698 Acyl transferase domain CKQ55_RS27120 PF00668 Condensation domain CKQ55_RS27120 PF00501 AMP-binding enzyme CKQ55_RS27120 PF00550 Phosphopantetheine attachment site CKQ55_RS27120 PF08242 Methyltransferase domain CKQ55_RS27130 PF04954 Siderophore-interacting protein CKQ55_RS27130 PF08021 Siderophore-interacting FAD-binding domain CKQ55_RS27130 PF00005 ABC transporter CKQ55_RS27130 PF00664 ABC transporter transmembrane region CKQ55_RS27135 PF00664 ABC transporter transmembrane region CKQ55_RS27135 PF00005 ABC transporter CKQ55_RS27140 PF07690 Major Facilitator Superfamily CKQ55_RS27145 PF00425 chorismate binding enzyme CKQ55_RS27150 PF07690 Major Facilitator Superfamily CKQ55_RS27165 PF00512 His Kinase A (phospho-acceptor) domain CKQ55_RS27165 PF00672 HAMP domain CKQ55_RS27165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CKQ55_RS27180 PF03315 Serine dehydratase beta chain CKQ55_RS27180 PF03313 Serine dehydratase alpha chain CKQ55_RS27195 PF01636 Phosphotransferase enzyme family CKQ55_RS27245 PF01425 Amidase CKQ55_RS27250 PF02979 Nitrile hydratase, alpha chain CKQ55_RS27255 PF02211 Nitrile hydratase beta subunit CKQ55_RS27280 PF13191 AAA ATPase domain CKQ55_RS27280 PF00069 Protein kinase domain CKQ55_RS27285 PF00676 Dehydrogenase E1 component CKQ55_RS27290 PF02780 Transketolase, C-terminal domain CKQ55_RS27290 PF02779 Transketolase, pyrimidine binding domain CKQ55_RS27295 PF02817 e3 binding domain CKQ55_RS27295 PF00364 Biotin-requiring enzyme CKQ55_RS27295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CKQ55_RS27300 PF07992 Pyridine nucleotide-disulphide oxidoreductase CKQ55_RS27300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CKQ55_RS27305 PF00128 Alpha amylase, catalytic domain CKQ55_RS27305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CKQ55_RS27310 PF00128 Alpha amylase, catalytic domain CKQ55_RS27315 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CKQ55_RS27315 PF00128 Alpha amylase, catalytic domain CKQ55_RS27315 PF11941 Domain of unknown function (DUF3459) CKQ55_RS27335 PF01679 Proteolipid membrane potential modulator CKQ55_RS27345 PF02508 Rnf-Nqr subunit, membrane protein CKQ55_RS27350 PF00563 EAL domain CKQ55_RS27350 PF00196 Bacterial regulatory proteins, luxR family CKQ55_RS27355 PF02638 Glycosyl hydrolase-like 10 CKQ55_RS27385 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS27390 PF01261 Xylose isomerase-like TIM barrel CKQ55_RS27395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS27395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS27400 PF03070 TENA/THI-4/PQQC family CKQ55_RS27405 PF00005 ABC transporter CKQ55_RS27410 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS27415 PF09084 NMT1/THI5 like CKQ55_RS27420 PF00202 Aminotransferase class-III CKQ55_RS27425 PF00282 Pyridoxal-dependent decarboxylase conserved domain CKQ55_RS27440 PF02540 NAD synthase CKQ55_RS27440 PF00117 Glutamine amidotransferase class-I CKQ55_RS27440 PF00958 GMP synthase C terminal domain CKQ55_RS27445 PF03717 Penicillin-binding Protein dimerisation domain CKQ55_RS27445 PF00905 Penicillin binding protein transpeptidase domain CKQ55_RS27450 PF01425 Amidase CKQ55_RS27455 PF00289 Biotin carboxylase, N-terminal domain CKQ55_RS27455 PF02785 Biotin carboxylase C-terminal domain CKQ55_RS27455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CKQ55_RS27470 PF00005 ABC transporter CKQ55_RS27495 PF01810 LysE type translocator CKQ55_RS27515 PF00141 Peroxidase CKQ55_RS27530 PF00083 Sugar (and other) transporter CKQ55_RS27540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS27540 PF03466 LysR substrate binding domain CKQ55_RS27545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS27545 PF03466 LysR substrate binding domain CKQ55_RS27550 PF12833 Helix-turn-helix domain CKQ55_RS27555 PF01810 LysE type translocator CKQ55_RS27560 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS27560 PF00384 Molybdopterin oxidoreductase CKQ55_RS27565 PF01548 Transposase CKQ55_RS27565 PF02371 Transposase IS116/IS110/IS902 family CKQ55_RS27570 PF00384 Molybdopterin oxidoreductase CKQ55_RS27575 PF01062 Bestrophin, RFP-TM, chloride channel CKQ55_RS27590 PF02566 OsmC-like protein CKQ55_RS27600 PF03466 LysR substrate binding domain CKQ55_RS27600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS27610 PF08136 30S ribosomal protein subunit S22 family CKQ55_RS27615 PF00390 Malic enzyme, N-terminal domain CKQ55_RS27615 PF03949 Malic enzyme, NAD binding domain CKQ55_RS27620 PF00005 ABC transporter CKQ55_RS27620 PF12848 ABC transporter CKQ55_RS27645 PF00239 Resolvase, N terminal domain CKQ55_RS27645 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS27650 PF00719 Inorganic pyrophosphatase CKQ55_RS27655 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS27655 PF00107 Zinc-binding dehydrogenase CKQ55_RS27665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS27670 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS27675 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS27675 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS27680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS27680 PF00005 ABC transporter CKQ55_RS27685 PF00296 Luciferase-like monooxygenase CKQ55_RS27695 PF07690 Major Facilitator Superfamily CKQ55_RS27710 PF01292 Prokaryotic cytochrome b561 CKQ55_RS27715 PF12800 4Fe-4S binding domain CKQ55_RS27715 PF13247 4Fe-4S dicluster domain CKQ55_RS27715 PF09163 Formate dehydrogenase N, transmembrane CKQ55_RS27730 PF00892 EamA-like transporter family CKQ55_RS27735 PF07690 Major Facilitator Superfamily CKQ55_RS27745 PF07690 Major Facilitator Superfamily CKQ55_RS27750 PF14710 Respiratory nitrate reductase alpha N-terminal CKQ55_RS27750 PF00384 Molybdopterin oxidoreductase CKQ55_RS27750 PF01568 Molydopterin dinucleotide binding domain CKQ55_RS27755 PF14711 Respiratory nitrate reductase beta C-terminal CKQ55_RS27755 PF13247 4Fe-4S dicluster domain CKQ55_RS27760 PF02613 Nitrate reductase delta subunit CKQ55_RS27765 PF02665 Nitrate reductase gamma subunit CKQ55_RS27770 PF00797 N-acetyltransferase CKQ55_RS27775 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS27785 PF00005 ABC transporter CKQ55_RS27785 PF08402 TOBE domain CKQ55_RS27790 PF01613 Flavin reductase like domain CKQ55_RS27795 PF12833 Helix-turn-helix domain CKQ55_RS27795 PF02311 AraC-like ligand binding domain CKQ55_RS27810 PF11471 Maltoporin periplasmic N-terminal extension CKQ55_RS27810 PF02264 LamB porin CKQ55_RS27830 PF01361 Tautomerase enzyme CKQ55_RS27835 PF13417 Glutathione S-transferase, N-terminal domain CKQ55_RS27840 PF00356 Bacterial regulatory proteins, lacI family CKQ55_RS27845 PF13378 Enolase C-terminal domain-like CKQ55_RS27845 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS27850 PF07690 Major Facilitator Superfamily CKQ55_RS27860 PF00005 ABC transporter CKQ55_RS27865 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS27875 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS27880 PF00296 Luciferase-like monooxygenase CKQ55_RS27885 PF01546 Peptidase family M20/M25/M40 CKQ55_RS27885 PF07687 Peptidase dimerisation domain CKQ55_RS27890 PF00296 Luciferase-like monooxygenase CKQ55_RS27895 PF02224 Cytidylate kinase CKQ55_RS27900 PF00324 Amino acid permease CKQ55_RS27905 PF06004 Bacterial protein of unknown function (DUF903) CKQ55_RS27915 PF00593 TonB dependent receptor CKQ55_RS27915 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS27920 PF04175 Protein of unknown function (DUF406) CKQ55_RS27925 PF01156 Inosine-uridine preferring nucleoside hydrolase CKQ55_RS27930 PF00107 Zinc-binding dehydrogenase CKQ55_RS27930 PF16884 N-terminal domain of oxidoreductase CKQ55_RS27935 PF01381 Helix-turn-helix CKQ55_RS27935 PF08671 Anti-repressor SinI CKQ55_RS27960 PF00583 Acetyltransferase (GNAT) family CKQ55_RS27965 PF04657 Putative inner membrane exporter, YdcZ CKQ55_RS27970 PF10735 Protein of unknown function (DUF2526) CKQ55_RS27975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS27980 PF00171 Aldehyde dehydrogenase family CKQ55_RS27985 PF01095 Pectinesterase CKQ55_RS27990 PF00561 alpha/beta hydrolase fold CKQ55_RS27995 PF10753 Toxin GhoT_OrtT CKQ55_RS28015 PF00171 Aldehyde dehydrogenase family CKQ55_RS28020 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS28025 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS28030 PF00005 ABC transporter CKQ55_RS28030 PF08402 TOBE domain CKQ55_RS28035 PF13416 Bacterial extracellular solute-binding protein CKQ55_RS28045 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS28045 PF00155 Aminotransferase class I and II CKQ55_RS28050 PF01654 Cytochrome bd terminal oxidase subunit I CKQ55_RS28055 PF02322 Cytochrome bd terminal oxidase subunit II CKQ55_RS28070 PF12392 Collagenase CKQ55_RS28070 PF01136 Peptidase family U32 CKQ55_RS28075 PF01381 Helix-turn-helix CKQ55_RS28075 PF07883 Cupin domain CKQ55_RS28080 PF03594 Benzoate membrane transport protein CKQ55_RS28085 PF12833 Helix-turn-helix domain CKQ55_RS28090 PF00892 EamA-like transporter family CKQ55_RS28095 PF11769 Protein of unknown function (DUF3313) CKQ55_RS28100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS28105 PF01546 Peptidase family M20/M25/M40 CKQ55_RS28105 PF07687 Peptidase dimerisation domain CKQ55_RS28110 PF03848 Tellurite resistance protein TehB CKQ55_RS28115 PF03595 Voltage-dependent anion channel CKQ55_RS28120 PF18836 Beta solenoid repeat from YDCK CKQ55_RS28125 PF13302 Acetyltransferase (GNAT) domain CKQ55_RS28130 PF04349 Periplasmic glucan biosynthesis protein, MdoG CKQ55_RS28135 PF00135 Carboxylesterase family CKQ55_RS28140 PF07063 Domain of unknown function (DUF1338) CKQ55_RS28145 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CKQ55_RS28145 PF00775 Dioxygenase CKQ55_RS28150 PF00775 Dioxygenase CKQ55_RS28155 PF03466 LysR substrate binding domain CKQ55_RS28155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS28165 PF01011 PQQ enzyme repeat CKQ55_RS28175 PF00107 Zinc-binding dehydrogenase CKQ55_RS28175 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS28180 PF02583 Metal-sensitive transcriptional repressor CKQ55_RS28185 PF01292 Prokaryotic cytochrome b561 CKQ55_RS28190 PF06183 DinI-like family CKQ55_RS28200 PF14001 YdfZ protein CKQ55_RS28205 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS28205 PF05230 MASE2 domain CKQ55_RS28210 PF03466 LysR substrate binding domain CKQ55_RS28210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS28215 PF00583 Acetyltransferase (GNAT) family CKQ55_RS28220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CKQ55_RS28220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CKQ55_RS28225 PF00171 Aldehyde dehydrogenase family CKQ55_RS28230 PF02698 DUF218 domain CKQ55_RS28240 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CKQ55_RS28240 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CKQ55_RS28255 PF13533 Biotin-lipoyl like CKQ55_RS28260 PF02321 Outer membrane efflux protein CKQ55_RS28265 PF01596 O-methyltransferase CKQ55_RS28270 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CKQ55_RS28270 PF00271 Helicase conserved C-terminal domain CKQ55_RS28270 PF04408 Helicase associated domain (HA2) CKQ55_RS28270 PF00270 DEAD/DEAH box helicase CKQ55_RS28270 PF11898 Domain of unknown function (DUF3418) CKQ55_RS28275 PF02525 Flavodoxin-like fold CKQ55_RS28285 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS28290 PF08223 PaaX-like protein C-terminal domain CKQ55_RS28290 PF07848 PaaX-like protein CKQ55_RS28295 PF14535 AMP-binding enzyme C-terminal domain CKQ55_RS28295 PF00501 AMP-binding enzyme CKQ55_RS28300 PF00108 Thiolase, N-terminal domain CKQ55_RS28300 PF02803 Thiolase, C-terminal domain CKQ55_RS28305 PF03061 Thioesterase superfamily CKQ55_RS28310 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CKQ55_RS28310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CKQ55_RS28310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CKQ55_RS28315 PF00378 Enoyl-CoA hydratase/isomerase CKQ55_RS28320 PF00378 Enoyl-CoA hydratase/isomerase CKQ55_RS28325 PF00175 Oxidoreductase NAD-binding domain CKQ55_RS28325 PF00970 Oxidoreductase FAD-binding domain CKQ55_RS28325 PF00111 2Fe-2S iron-sulfur cluster binding domain CKQ55_RS28330 PF01883 Iron-sulfur cluster assembly protein CKQ55_RS28335 PF05138 Phenylacetic acid catabolic protein CKQ55_RS28340 PF06243 Phenylacetic acid degradation B CKQ55_RS28345 PF05138 Phenylacetic acid catabolic protein CKQ55_RS28350 PF01575 MaoC like domain CKQ55_RS28350 PF00171 Aldehyde dehydrogenase family CKQ55_RS28355 PF01179 Copper amine oxidase, enzyme domain CKQ55_RS28355 PF07833 Copper amine oxidase N-terminal domain CKQ55_RS28355 PF02727 Copper amine oxidase, N2 domain CKQ55_RS28355 PF02728 Copper amine oxidase, N3 domain CKQ55_RS28370 PF06906 Protein of unknown function (DUF1272) CKQ55_RS28385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS28385 PF03466 LysR substrate binding domain CKQ55_RS28405 PF01965 DJ-1/PfpI family CKQ55_RS28405 PF12833 Helix-turn-helix domain CKQ55_RS28410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CKQ55_RS28410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CKQ55_RS28420 PF00797 N-acetyltransferase CKQ55_RS28425 PF00155 Aminotransferase class I and II CKQ55_RS28425 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS28445 PF13280 WYL domain CKQ55_RS28445 PF08279 HTH domain CKQ55_RS28450 PF00300 Histidine phosphatase superfamily (branch 1) CKQ55_RS28460 PF00873 AcrB/AcrD/AcrF family CKQ55_RS28465 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS28465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS28470 PF06445 GyrI-like small molecule binding domain CKQ55_RS28470 PF12833 Helix-turn-helix domain CKQ55_RS28475 PF02311 AraC-like ligand binding domain CKQ55_RS28475 PF12833 Helix-turn-helix domain CKQ55_RS28480 PF04632 Fusaric acid resistance protein family CKQ55_RS28490 PF00529 HlyD membrane-fusion protein of T1SS CKQ55_RS28490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CKQ55_RS28510 PF02774 Semialdehyde dehydrogenase, dimerisation domain CKQ55_RS28510 PF01118 Semialdehyde dehydrogenase, NAD binding domain CKQ55_RS28515 PF01872 RibD C-terminal domain CKQ55_RS28530 PF07687 Peptidase dimerisation domain CKQ55_RS28530 PF01546 Peptidase family M20/M25/M40 CKQ55_RS28540 PF01042 Endoribonuclease L-PSP CKQ55_RS28550 PF03466 LysR substrate binding domain CKQ55_RS28550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS28555 PF00005 ABC transporter CKQ55_RS28560 PF05721 Phytanoyl-CoA dioxygenase (PhyH) CKQ55_RS28570 PF00596 Class II Aldolase and Adducin N-terminal domain CKQ55_RS28575 PF00171 Aldehyde dehydrogenase family CKQ55_RS28580 PF14525 AraC-binding-like domain CKQ55_RS28580 PF12833 Helix-turn-helix domain CKQ55_RS28585 PF07027 Protein of unknown function (DUF1318) CKQ55_RS28590 PF13617 YnbE-like lipoprotein CKQ55_RS28595 PF11739 Dicarboxylate transport CKQ55_RS28600 PF09335 SNARE associated Golgi protein CKQ55_RS28605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CKQ55_RS28605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CKQ55_RS28610 PF03724 META domain CKQ55_RS28615 PF03891 Domain of unknown function (DUF333) CKQ55_RS28650 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CKQ55_RS28650 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CKQ55_RS28650 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CKQ55_RS28650 PF10371 Domain of unknown function CKQ55_RS28650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CKQ55_RS28655 PF00267 Gram-negative porin CKQ55_RS28665 PF00582 Universal stress protein family CKQ55_RS28670 PF06291 Bor protein CKQ55_RS28675 PF01278 Omptin family CKQ55_RS28685 PF01171 PP-loop family CKQ55_RS28690 PF00270 DEAD/DEAH box helicase CKQ55_RS28690 PF00271 Helicase conserved C-terminal domain CKQ55_RS28690 PF03880 DbpA RNA binding domain CKQ55_RS28700 PF01544 CorA-like Mg2+ transporter protein CKQ55_RS28710 PF00455 DeoR C terminal sensor domain CKQ55_RS28710 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS28715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CKQ55_RS28715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS28720 PF11798 IMS family HHH motif CKQ55_RS28720 PF13438 Domain of unknown function (DUF4113) CKQ55_RS28720 PF11799 impB/mucB/samB family C-terminal domain CKQ55_RS28720 PF00817 impB/mucB/samB family CKQ55_RS28725 PF00717 Peptidase S24-like CKQ55_RS28745 PF07274 Protein of unknown function (DUF1440) CKQ55_RS28750 PF00691 OmpA family CKQ55_RS28750 PF01389 OmpA-like transmembrane domain CKQ55_RS28755 PF15977 Winged helix-turn-helix DNA binding CKQ55_RS28775 PF00106 short chain dehydrogenase CKQ55_RS28780 PF03060 Nitronate monooxygenase CKQ55_RS28785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS28785 PF03466 LysR substrate binding domain CKQ55_RS28790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS28790 PF03466 LysR substrate binding domain CKQ55_RS28795 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CKQ55_RS28800 PF07690 Major Facilitator Superfamily CKQ55_RS28810 PF13411 MerR HTH family regulatory protein CKQ55_RS28820 PF00106 short chain dehydrogenase CKQ55_RS28845 PF08349 Protein of unknown function (DUF1722) CKQ55_RS28850 PF02264 LamB porin CKQ55_RS28860 PF03466 LysR substrate binding domain CKQ55_RS28860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS28865 PF03616 Sodium/glutamate symporter CKQ55_RS28885 PF02909 Tetracyclin repressor-like, C-terminal domain CKQ55_RS28885 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS28890 PF07690 Major Facilitator Superfamily CKQ55_RS28895 PF00440 Bacterial regulatory proteins, tetR family CKQ55_RS28900 PF12833 Helix-turn-helix domain CKQ55_RS28915 PF04616 Glycosyl hydrolases family 43 CKQ55_RS28915 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CKQ55_RS28970 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CKQ55_RS28970 PF04717 Type VI secretion system, phage-baseplate injector CKQ55_RS28970 PF13296 Putative type VI secretion system Rhs element Vgr CKQ55_RS28975 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS28975 PF07724 AAA domain (Cdc48 subfamily) CKQ55_RS28975 PF10431 C-terminal, D2-small domain, of ClpB protein CKQ55_RS28975 PF17871 AAA lid domain CKQ55_RS28985 PF00691 OmpA family CKQ55_RS28985 PF13488 Glycine zipper CKQ55_RS29000 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CKQ55_RS29015 PF01965 DJ-1/PfpI family CKQ55_RS29020 PF00005 ABC transporter CKQ55_RS29025 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29040 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS29045 PF02615 Malate/L-lactate dehydrogenase CKQ55_RS29055 PF00005 ABC transporter CKQ55_RS29060 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29065 PF00266 Aminotransferase class-V CKQ55_RS29075 PF00899 ThiF family CKQ55_RS29075 PF00581 Rhodanese-like domain CKQ55_RS29090 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS29095 PF00132 Bacterial transferase hexapeptide (six repeats) CKQ55_RS29105 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29110 PF00005 ABC transporter CKQ55_RS29115 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS29120 PF01817 Chorismate mutase type II CKQ55_RS29125 PF00005 ABC transporter CKQ55_RS29130 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29135 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29140 PF00106 short chain dehydrogenase CKQ55_RS29150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS29150 PF03466 LysR substrate binding domain CKQ55_RS29155 PF00155 Aminotransferase class I and II CKQ55_RS29160 PF03746 LamB/YcsF family CKQ55_RS29165 PF02626 Carboxyltransferase domain, subdomain A and B CKQ55_RS29170 PF02682 Carboxyltransferase domain, subdomain C and D CKQ55_RS29175 PF00497 Bacterial extracellular solute-binding proteins, family 3 CKQ55_RS29180 PF00892 EamA-like transporter family CKQ55_RS29185 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CKQ55_RS29185 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CKQ55_RS29190 PF02785 Biotin carboxylase C-terminal domain CKQ55_RS29190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CKQ55_RS29190 PF00289 Biotin carboxylase, N-terminal domain CKQ55_RS29195 PF00364 Biotin-requiring enzyme CKQ55_RS29200 PF07702 UTRA domain CKQ55_RS29200 PF00392 Bacterial regulatory proteins, gntR family CKQ55_RS29205 PF00005 ABC transporter CKQ55_RS29215 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29235 PF07690 Major Facilitator Superfamily CKQ55_RS29240 PF03180 NLPA lipoprotein CKQ55_RS29245 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29250 PF00005 ABC transporter CKQ55_RS29255 PF00296 Luciferase-like monooxygenase CKQ55_RS29260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS29265 PF00246 Zinc carboxypeptidase CKQ55_RS29270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CKQ55_RS29270 PF13378 Enolase C-terminal domain-like CKQ55_RS29275 PF08534 Redoxin CKQ55_RS29280 PF05145 Transition state regulatory protein AbrB CKQ55_RS29285 PF18024 Helix-turn-helix domain CKQ55_RS29285 PF00158 Sigma-54 interaction domain CKQ55_RS29290 PF05128 Domain of unknown function (DUF697) CKQ55_RS29295 PF04317 YcjX-like family, DUF463 CKQ55_RS29300 PF00581 Rhodanese-like domain CKQ55_RS29305 PF09584 Phage shock protein PspD (Phageshock_PspD) CKQ55_RS29310 PF04024 PspC domain CKQ55_RS29315 PF06667 Phage shock protein B CKQ55_RS29320 PF04012 PspA/IM30 family CKQ55_RS29325 PF02954 Bacterial regulatory protein, Fis family CKQ55_RS29325 PF00158 Sigma-54 interaction domain CKQ55_RS29330 PF07690 Major Facilitator Superfamily CKQ55_RS29335 PF07687 Peptidase dimerisation domain CKQ55_RS29335 PF01546 Peptidase family M20/M25/M40 CKQ55_RS29340 PF12833 Helix-turn-helix domain CKQ55_RS29350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CKQ55_RS29355 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29360 PF00528 Binding-protein-dependent transport system inner membrane component CKQ55_RS29360 PF12911 N-terminal TM domain of oligopeptide transport permease C CKQ55_RS29365 PF00005 ABC transporter CKQ55_RS29365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CKQ55_RS29370 PF00005 ABC transporter CKQ55_RS29385 PF00575 S1 RNA binding domain CKQ55_RS29385 PF17876 Cold shock domain CKQ55_RS29385 PF00773 RNB domain CKQ55_RS29385 PF08206 Ribonuclease B OB domain CKQ55_RS29395 PF00455 DeoR C terminal sensor domain CKQ55_RS29395 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS29400 PF05433 Glycine zipper 2TM domain CKQ55_RS29405 PF01253 Translation initiation factor SUI1 CKQ55_RS29410 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CKQ55_RS29415 PF18073 Rubredoxin metal binding domain CKQ55_RS29420 PF06305 Lipopolysaccharide assembly protein A domain CKQ55_RS29425 PF01569 PAP2 superfamily CKQ55_RS29430 PF00925 GTP cyclohydrolase II CKQ55_RS29435 PF00330 Aconitase family (aconitate hydratase) CKQ55_RS29435 PF00694 Aconitase C-terminal domain CKQ55_RS29445 PF03466 LysR substrate binding domain CKQ55_RS29445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS29450 PF01131 DNA topoisomerase CKQ55_RS29450 PF08272 Topoisomerase I zinc-ribbon-like CKQ55_RS29450 PF01396 Topoisomerase DNA binding C4 zinc finger CKQ55_RS29450 PF01751 Toprim domain CKQ55_RS29455 PF10692 Protein of unknown function (DUF2498) CKQ55_RS29460 PF08496 Peptidase family S49 N-terminal CKQ55_RS29460 PF01343 Peptidase family S49 CKQ55_RS29470 PF00106 short chain dehydrogenase CKQ55_RS29475 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CKQ55_RS29480 PF12833 Helix-turn-helix domain CKQ55_RS29495 PF01479 S4 domain CKQ55_RS29495 PF00849 RNA pseudouridylate synthase CKQ55_RS29500 PF01300 Telomere recombination CKQ55_RS29505 PF02811 PHP domain CKQ55_RS29510 PF00425 chorismate binding enzyme CKQ55_RS29510 PF04715 Anthranilate synthase component I, N terminal region CKQ55_RS29515 PF02885 Glycosyl transferase family, helical bundle domain CKQ55_RS29515 PF00117 Glutamine amidotransferase class-I CKQ55_RS29515 PF00591 Glycosyl transferase family, a/b domain CKQ55_RS29520 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CKQ55_RS29520 PF00218 Indole-3-glycerol phosphate synthase CKQ55_RS29525 PF00291 Pyridoxal-phosphate dependent enzyme CKQ55_RS29530 PF00290 Tryptophan synthase alpha chain CKQ55_RS29545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CKQ55_RS29545 PF03466 LysR substrate binding domain CKQ55_RS29550 PF00106 short chain dehydrogenase CKQ55_RS29550 PF00300 Histidine phosphatase superfamily (branch 1) CKQ55_RS29555 PF12833 Helix-turn-helix domain CKQ55_RS29565 PF10820 Protein of unknown function (DUF2543) CKQ55_RS29570 PF03922 OmpW family CKQ55_RS29580 PF04279 Intracellular septation protein A CKQ55_RS29585 PF00654 Voltage gated chloride channel CKQ55_RS29595 PF03061 Thioesterase superfamily CKQ55_RS29600 PF14002 YniB-like protein CKQ55_RS29605 PF13419 Haloacid dehalogenase-like hydrolase CKQ55_RS29615 PF04307 LexA-binding, inner membrane-associated putative hydrolase CKQ55_RS29620 PF00375 Sodium:dicarboxylate symporter family CKQ55_RS29625 PF10729 Cell division activator CedA CKQ55_RS29635 PF04794 YdjC-like protein CKQ55_RS29640 PF02056 Family 4 glycosyl hydrolase CKQ55_RS29640 PF11975 Family 4 glycosyl hydrolase C-terminal domain CKQ55_RS29645 PF12833 Helix-turn-helix domain CKQ55_RS29645 PF07883 Cupin domain CKQ55_RS29650 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CKQ55_RS29655 PF02378 Phosphotransferase system, EIIC CKQ55_RS29660 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CKQ55_RS29665 PF04355 SmpA / OmlA family CKQ55_RS29670 PF02540 NAD synthase CKQ55_RS29680 PF09972 Predicted membrane protein (DUF2207) CKQ55_RS29685 PF04011 LemA family CKQ55_RS29690 PF07813 LTXXQ motif family protein CKQ55_RS29700 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CKQ55_RS29705 PF04996 Succinylarginine dihydrolase CKQ55_RS29710 PF00171 Aldehyde dehydrogenase family CKQ55_RS29715 PF04958 Arginine N-succinyltransferase beta subunit CKQ55_RS29720 PF00202 Aminotransferase class-III CKQ55_RS29725 PF03372 Endonuclease/Exonuclease/phosphatase family CKQ55_RS29735 PF09335 SNARE associated Golgi protein CKQ55_RS29740 PF02627 Carboxymuconolactone decarboxylase family CKQ55_RS29745 PF13416 Bacterial extracellular solute-binding protein CKQ55_RS29755 PF00005 ABC transporter CKQ55_RS29760 PF00581 Rhodanese-like domain CKQ55_RS29765 PF01066 CDP-alcohol phosphatidyltransferase CKQ55_RS29770 PF00293 NUDIX domain CKQ55_RS29780 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CKQ55_RS29780 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CKQ55_RS29785 PF01751 Toprim domain CKQ55_RS29785 PF01131 DNA topoisomerase CKQ55_RS29790 PF02769 AIR synthase related protein, C-terminal domain CKQ55_RS29790 PF00586 AIR synthase related protein, N-terminal domain CKQ55_RS29800 PF01569 PAP2 superfamily CKQ55_RS29805 PF00881 Nitroreductase family CKQ55_RS29810 PF01343 Peptidase family S49 CKQ55_RS29815 PF00710 Asparaginase, N-terminal CKQ55_RS29815 PF17763 Glutaminase/Asparaginase C-terminal domain CKQ55_RS29820 PF00857 Isochorismatase family CKQ55_RS29825 PF00083 Sugar (and other) transporter CKQ55_RS29830 PF00455 DeoR C terminal sensor domain CKQ55_RS29830 PF08220 DeoR-like helix-turn-helix domain CKQ55_RS29835 PF00248 Aldo/keto reductase family CKQ55_RS29840 PF00294 pfkB family carbohydrate kinase CKQ55_RS29845 PF01116 Fructose-bisphosphate aldolase class-II CKQ55_RS29850 PF00107 Zinc-binding dehydrogenase CKQ55_RS29850 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS29855 PF00083 Sugar (and other) transporter CKQ55_RS29860 PF08240 Alcohol dehydrogenase GroES-like domain CKQ55_RS29860 PF00107 Zinc-binding dehydrogenase CKQ55_RS29865 PF00704 Glycosyl hydrolases family 18 CKQ55_RS29865 PF00041 Fibronectin type III domain CKQ55_RS29870 PF01844 HNH endonuclease CKQ55_RS29875 PF07023 Protein of unknown function (DUF1315) CKQ55_RS29880 PF01641 SelR domain CKQ55_RS29890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CKQ55_RS29890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CKQ55_RS29895 PF01263 Aldose 1-epimerase CKQ55_RS29900 PF00248 Aldo/keto reductase family CKQ55_RS29905 PF06629 MltA-interacting protein MipA CKQ55_RS29910 PF08298 PrkA AAA domain CKQ55_RS29910 PF06798 PrkA serine protein kinase C-terminal domain CKQ55_RS29915 PF04285 Protein of unknown function (DUF444) CKQ55_RS29920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CKQ55_RS29930 PF17155 Gammaproteobacterial periplasmic sensor domain CKQ55_RS29930 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS29935 PF04073 Aminoacyl-tRNA editing domain CKQ55_RS29940 PF04284 Protein of unknown function (DUF441) CKQ55_RS29945 PF12833 Helix-turn-helix domain CKQ55_RS29945 PF02311 AraC-like ligand binding domain CKQ55_RS29950 PF07690 Major Facilitator Superfamily CKQ55_RS29955 PF06418 CTP synthase N-terminus CKQ55_RS29955 PF00117 Glutamine amidotransferase class-I CKQ55_RS29960 PF04463 Protein of unknown function (DUF523) CKQ55_RS29965 PF04343 Protein of unknown function, DUF488 CKQ55_RS29970 PF03891 Domain of unknown function (DUF333) CKQ55_RS29975 PF13185 GAF domain CKQ55_RS29975 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS29995 PF10749 Protein of unknown function (DUF2534) CKQ55_RS30000 PF01810 LysE type translocator CKQ55_RS30005 PF03279 Bacterial lipid A biosynthesis acyltransferase CKQ55_RS30010 PF13649 Methyltransferase domain CKQ55_RS30015 PF08281 Sigma-70, region 4 CKQ55_RS30015 PF04542 Sigma-70 region 2 CKQ55_RS30020 PF04773 FecR protein CKQ55_RS30020 PF16220 Domain of unknown function (DUF4880) CKQ55_RS30025 PF07715 TonB-dependent Receptor Plug Domain CKQ55_RS30025 PF07660 Secretin and TonB N terminus short domain CKQ55_RS30025 PF00593 TonB dependent receptor CKQ55_RS30030 PF01497 Periplasmic binding protein CKQ55_RS30035 PF01032 FecCD transport family CKQ55_RS30040 PF01032 FecCD transport family CKQ55_RS30045 PF00005 ABC transporter CKQ55_RS30050 PF00710 Asparaginase, N-terminal CKQ55_RS30050 PF17763 Glutaminase/Asparaginase C-terminal domain CKQ55_RS30055 PF01966 HD domain CKQ55_RS30060 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS30065 PF00180 Isocitrate/isopropylmalate dehydrogenase CKQ55_RS30085 PF02463 RecF/RecN/SMC N terminal domain CKQ55_RS30090 PF11799 impB/mucB/samB family C-terminal domain CKQ55_RS30090 PF11798 IMS family HHH motif CKQ55_RS30090 PF13438 Domain of unknown function (DUF4113) CKQ55_RS30090 PF00817 impB/mucB/samB family CKQ55_RS30095 PF00717 Peptidase S24-like CKQ55_RS30100 PF06183 DinI-like family CKQ55_RS30110 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS30110 PF00239 Resolvase, N terminal domain CKQ55_RS30185 PF05321 Haemolysin expression modulating protein CKQ55_RS30195 PF01548 Transposase CKQ55_RS30195 PF02371 Transposase IS116/IS110/IS902 family CKQ55_RS30200 PF01526 Tn3 transposase DDE domain CKQ55_RS30200 PF13700 Domain of unknown function (DUF4158) CKQ55_RS30225 PF06965 Na+/H+ antiporter 1 CKQ55_RS30235 PF00239 Resolvase, N terminal domain CKQ55_RS30235 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS30240 PF13700 Domain of unknown function (DUF4158) CKQ55_RS30240 PF01526 Tn3 transposase DDE domain CKQ55_RS30245 PF01555 DNA methylase CKQ55_RS30260 PF06183 DinI-like family CKQ55_RS30265 PF00717 Peptidase S24-like CKQ55_RS30270 PF13438 Domain of unknown function (DUF4113) CKQ55_RS30270 PF00817 impB/mucB/samB family CKQ55_RS30270 PF11799 impB/mucB/samB family C-terminal domain CKQ55_RS30290 PF00239 Resolvase, N terminal domain CKQ55_RS30290 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS30305 PF13333 Integrase core domain CKQ55_RS30305 PF13276 HTH-like domain CKQ55_RS30305 PF00665 Integrase core domain CKQ55_RS30315 PF09019 EcoRII C terminal CKQ55_RS30315 PF09217 Restriction endonuclease EcoRII, N-terminal CKQ55_RS30320 PF18284 DNA methylase N-terminal domain CKQ55_RS30320 PF00145 C-5 cytosine-specific DNA methylase CKQ55_RS30325 PF00239 Resolvase, N terminal domain CKQ55_RS30325 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS30335 PF04754 Putative transposase, YhgA-like CKQ55_RS30355 PF01526 Tn3 transposase DDE domain CKQ55_RS30355 PF13700 Domain of unknown function (DUF4158) CKQ55_RS30360 PF00239 Resolvase, N terminal domain CKQ55_RS30360 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS30420 PF04851 Type III restriction enzyme, res subunit CKQ55_RS30420 PF02151 UvrB/uvrC motif CKQ55_RS30420 PF00271 Helicase conserved C-terminal domain CKQ55_RS30420 PF12344 Ultra-violet resistance protein B CKQ55_RS30420 PF17757 UvrB interaction domain CKQ55_RS30435 PF00176 SNF2 family N-terminal domain CKQ55_RS30435 PF00271 Helicase conserved C-terminal domain CKQ55_RS30440 PF02586 SOS response associated peptidase (SRAP) CKQ55_RS30450 PF02387 IncFII RepA protein family CKQ55_RS30465 PF10723 Replication regulatory protein RepB CKQ55_RS30500 PF05857 TraX protein CKQ55_RS30505 PF18272 single-stranded DNA binding TraI N-terminal subdomain CKQ55_RS30505 PF08751 TrwC relaxase CKQ55_RS30505 PF07057 DNA helicase TraI CKQ55_RS30505 PF18340 DNA relaxase TraI 2B/2B-like domain CKQ55_RS30510 PF10412 Type IV secretion-system coupling protein DNA-binding domain CKQ55_RS30510 PF12615 F sex factor protein N terminal CKQ55_RS30520 PF07916 TraG-like protein, N-terminal region CKQ55_RS30525 PF06122 Conjugative relaxosome accessory transposon protein CKQ55_RS30530 PF13728 F plasmid transfer operon protein CKQ55_RS30535 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) CKQ55_RS30540 PF13728 F plasmid transfer operon protein CKQ55_RS30550 PF11100 Conjugal transfer protein TrbE CKQ55_RS30565 PF06986 Type-1V conjugative transfer system mating pair stabilisation CKQ55_RS30570 PF09673 Type-F conjugative transfer system pilin assembly protein CKQ55_RS30575 PF06834 TraU protein CKQ55_RS30580 PF12477 Sex factor F TraW protein N terminal CKQ55_RS30585 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) CKQ55_RS30590 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer CKQ55_RS30620 PF09676 Type IV conjugative transfer system lipoprotein (TraV) CKQ55_RS30635 PF06586 TraK protein CKQ55_RS30640 PF05309 TraE protein CKQ55_RS30645 PF07178 TraL protein CKQ55_RS30650 PF05513 TraA CKQ55_RS30655 PF05509 TraY domain CKQ55_RS30665 PF05261 TraM protein, DNA-binding CKQ55_RS30670 PF01464 Transglycosylase SLT domain CKQ55_RS30675 PF03230 Antirestriction protein CKQ55_RS30740 PF06952 PsiA protein CKQ55_RS30745 PF06290 Plasmid SOS inhibition protein (PsiB) CKQ55_RS30750 PF02195 ParB-like nuclease domain CKQ55_RS30755 PF06006 Bacterial protein of unknown function (DUF905) CKQ55_RS30760 PF00436 Single-strand binding protein family CKQ55_RS30775 PF06440 DNA polymerase III, theta subunit CKQ55_RS30790 PF03230 Antirestriction protein CKQ55_RS30815 PF01555 DNA methylase CKQ55_RS30835 PF00717 Peptidase S24-like CKQ55_RS30840 PF11799 impB/mucB/samB family C-terminal domain CKQ55_RS30840 PF13438 Domain of unknown function (DUF4113) CKQ55_RS30840 PF00817 impB/mucB/samB family CKQ55_RS30850 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CKQ55_RS30870 PF06406 StbA protein CKQ55_RS30885 PF01051 Initiator Replication protein CKQ55_RS30895 PF03811 InsA N-terminal domain CKQ55_RS30895 PF12759 InsA C-terminal domain CKQ55_RS30900 PF03811 InsA N-terminal domain CKQ55_RS30900 PF12759 InsA C-terminal domain CKQ55_RS30930 PF11799 impB/mucB/samB family C-terminal domain CKQ55_RS30930 PF13438 Domain of unknown function (DUF4113) CKQ55_RS30930 PF00817 impB/mucB/samB family CKQ55_RS30940 PF01610 Transposase CKQ55_RS30940 PF13542 Helix-turn-helix domain of transposase family ISL3 CKQ55_RS30940 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CKQ55_RS30945 PF02586 SOS response associated peptidase (SRAP) CKQ55_RS30950 PF01555 DNA methylase CKQ55_RS30960 PF07128 Protein of unknown function (DUF1380) CKQ55_RS30980 PF06440 DNA polymerase III, theta subunit CKQ55_RS30995 PF06006 Bacterial protein of unknown function (DUF905) CKQ55_RS31000 PF02195 ParB-like nuclease domain CKQ55_RS31005 PF06290 Plasmid SOS inhibition protein (PsiB) CKQ55_RS31010 PF06952 PsiA protein CKQ55_RS31050 PF03230 Antirestriction protein CKQ55_RS31055 PF01464 Transglycosylase SLT domain CKQ55_RS31060 PF05261 TraM protein, DNA-binding CKQ55_RS31065 PF00989 PAS fold CKQ55_RS31070 PF05509 TraY domain CKQ55_RS31075 PF05513 TraA CKQ55_RS31080 PF07178 TraL protein CKQ55_RS31085 PF05309 TraE protein CKQ55_RS31090 PF06586 TraK protein CKQ55_RS31095 PF03743 Bacterial conjugation TrbI-like protein CKQ55_RS31100 PF09676 Type IV conjugative transfer system lipoprotein (TraV) CKQ55_RS31125 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer CKQ55_RS31130 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) CKQ55_RS31135 PF12477 Sex factor F TraW protein N terminal CKQ55_RS31140 PF06834 TraU protein CKQ55_RS31145 PF09673 Type-F conjugative transfer system pilin assembly protein CKQ55_RS31150 PF06986 Type-1V conjugative transfer system mating pair stabilisation CKQ55_RS31160 PF13728 F plasmid transfer operon protein CKQ55_RS31165 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) CKQ55_RS31170 PF13728 F plasmid transfer operon protein CKQ55_RS31180 PF06122 Conjugative relaxosome accessory transposon protein CKQ55_RS31185 PF07916 TraG-like protein, N-terminal region CKQ55_RS31200 PF12615 F sex factor protein N terminal CKQ55_RS31200 PF10412 Type IV secretion-system coupling protein DNA-binding domain CKQ55_RS31205 PF07057 DNA helicase TraI CKQ55_RS31205 PF18272 single-stranded DNA binding TraI N-terminal subdomain CKQ55_RS31205 PF18340 DNA relaxase TraI 2B/2B-like domain CKQ55_RS31205 PF08751 TrwC relaxase CKQ55_RS31210 PF05857 TraX protein CKQ55_RS31220 PF13462 Thioredoxin CKQ55_RS31220 PF06965 Na+/H+ antiporter 1 CKQ55_RS31230 PF10723 Replication regulatory protein RepB CKQ55_RS31245 PF02387 IncFII RepA protein family CKQ55_RS31305 PF05598 Transposase domain (DUF772) CKQ55_RS31305 PF01609 Transposase DDE domain CKQ55_RS31315 PF01609 Transposase DDE domain CKQ55_RS31315 PF05598 Transposase domain (DUF772) CKQ55_RS31320 PF00633 Helix-hairpin-helix motif CKQ55_RS31320 PF00730 HhH-GPD superfamily base excision DNA repair protein CKQ55_RS31325 PF00145 C-5 cytosine-specific DNA methylase CKQ55_RS31325 PF01381 Helix-turn-helix CKQ55_RS31350 PF00809 Pterin binding enzyme CKQ55_RS31355 PF00893 Small Multidrug Resistance protein CKQ55_RS31365 PF07724 AAA domain (Cdc48 subfamily) CKQ55_RS31365 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS31375 PF00665 Integrase core domain CKQ55_RS31375 PF09299 Mu transposase, C-terminal CKQ55_RS31395 PF07091 Ribosomal RNA methyltransferase (FmrO) CKQ55_RS31400 PF00753 Metallo-beta-lactamase superfamily CKQ55_RS31410 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CKQ55_RS31415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS31420 PF03091 CutA1 divalent ion tolerance protein CKQ55_RS31425 PF00166 Chaperonin 10 Kd subunit CKQ55_RS31430 PF00118 TCP-1/cpn60 chaperonin family CKQ55_RS31440 PF13936 Helix-turn-helix domain CKQ55_RS31440 PF00665 Integrase core domain CKQ55_RS31450 PF01609 Transposase DDE domain CKQ55_RS31450 PF05598 Transposase domain (DUF772) CKQ55_RS31470 PF01051 Initiator Replication protein CKQ55_RS31485 PF05598 Transposase domain (DUF772) CKQ55_RS31485 PF01609 Transposase DDE domain CKQ55_RS31495 PF01609 Transposase DDE domain CKQ55_RS31495 PF05598 Transposase domain (DUF772) CKQ55_RS31505 PF02447 GntP family permease CKQ55_RS31510 PF00589 Phage integrase family CKQ55_RS31520 PF01845 CcdB protein CKQ55_RS31525 PF07362 Post-segregation antitoxin CcdA CKQ55_RS31540 PF00563 EAL domain CKQ55_RS31540 PF08448 PAS fold CKQ55_RS31540 PF08447 PAS fold CKQ55_RS31540 PF00990 Diguanylate cyclase, GGDEF domain CKQ55_RS31545 PF13610 DDE domain CKQ55_RS31565 PF00376 MerR family regulatory protein CKQ55_RS31565 PF09278 MerR, DNA binding CKQ55_RS31570 PF05159 Capsule polysaccharide biosynthesis protein CKQ55_RS31575 PF05159 Capsule polysaccharide biosynthesis protein CKQ55_RS31630 PF03743 Bacterial conjugation TrbI-like protein CKQ55_RS31640 PF00437 Type II/IV secretion system protein CKQ55_RS31665 PF00565 Staphylococcal nuclease homologue CKQ55_RS31670 PF00004 ATPase family associated with various cellular activities (AAA) CKQ55_RS31670 PF06480 FtsH Extracellular CKQ55_RS31670 PF01434 Peptidase family M41 CKQ55_RS31670 PF17862 AAA+ lid domain CKQ55_RS31675 PF01131 DNA topoisomerase CKQ55_RS31675 PF01751 Toprim domain CKQ55_RS31680 PF00816 H-NS histone family CKQ55_RS31720 PF01526 Tn3 transposase DDE domain CKQ55_RS31720 PF13700 Domain of unknown function (DUF4158) CKQ55_RS31730 PF00665 Integrase core domain CKQ55_RS31730 PF13936 Helix-turn-helix domain CKQ55_RS31740 PF01609 Transposase DDE domain CKQ55_RS31740 PF05598 Transposase domain (DUF772) CKQ55_RS31750 PF00753 Metallo-beta-lactamase superfamily CKQ55_RS31760 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CKQ55_RS31765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CKQ55_RS31770 PF03091 CutA1 divalent ion tolerance protein CKQ55_RS31775 PF13610 DDE domain CKQ55_RS31785 PF00717 Peptidase S24-like CKQ55_RS31795 PF01610 Transposase CKQ55_RS31795 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CKQ55_RS31795 PF13542 Helix-turn-helix domain of transposase family ISL3 CKQ55_RS31800 PF02796 Helix-turn-helix domain of resolvase CKQ55_RS31800 PF00239 Resolvase, N terminal domain CKQ55_RS31805 PF13614 AAA domain CKQ55_RS31835 PF01051 Initiator Replication protein CKQ55_RS31850 PF00226 DnaJ domain CKQ55_RS31850 PF01556 DnaJ C terminal domain CKQ55_RS31850 PF00684 DnaJ central domain