locus-tag	class	description
CKQ55_RS00010	COG4725	Belongs to the MT-A70-like family
CKQ55_RS00020	COG1802	Transcriptional regulator
CKQ55_RS00020	COG4626	Terminase
CKQ55_RS00065	COG5532	Uncharacterized conserved protein (DUF2303)
CKQ55_RS00070	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
CKQ55_RS00120	COG0582	viral genome integration into host DNA
CKQ55_RS00125	COG0538	isocitrate dehydrogenase activity
CKQ55_RS00135	COG2801	Transposase and inactivated derivatives
CKQ55_RS00145	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CKQ55_RS00150	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CKQ55_RS00155	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CKQ55_RS00170	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CKQ55_RS00270	COG4695	Portal protein
CKQ55_RS00275	COG1802	Transcriptional regulator
CKQ55_RS00275	COG4626	Terminase
CKQ55_RS00350	COG0484	heat shock protein binding
CKQ55_RS00355	COG1403	HNH endonuclease
CKQ55_RS00370	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CKQ55_RS00380	COG4725	Belongs to the MT-A70-like family
CKQ55_RS00390	COG4626	Terminase
CKQ55_RS00390	COG1802	Transcriptional regulator
CKQ55_RS00435	COG5532	Uncharacterized conserved protein (DUF2303)
CKQ55_RS00440	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
CKQ55_RS00490	COG0582	viral genome integration into host DNA
CKQ55_RS00495	COG0538	isocitrate dehydrogenase activity
CKQ55_RS00500	COG1187	pseudouridine synthase activity
CKQ55_RS00520	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CKQ55_RS00525	COG2814	Major facilitator Superfamily
CKQ55_RS00535	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS00540	COG2205	protein histidine kinase activity
CKQ55_RS00545	COG2850	peptidyl-arginine hydroxylation
CKQ55_RS00570	COG1177	transmembrane transport
CKQ55_RS00585	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CKQ55_RS00590	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CKQ55_RS00595	COG0698	ribose 5-phosphate isomerase
CKQ55_RS00610	COG3395	kinase activity
CKQ55_RS00625	COG2390	Transcriptional regulator
CKQ55_RS00630	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CKQ55_RS00640	COG4591	ABC-type transport system involved in lipoprotein release permease component
CKQ55_RS00645	COG1136	(ABC) transporter
CKQ55_RS00650	COG4591	ABC-type transport system involved in lipoprotein release permease component
CKQ55_RS00655	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CKQ55_RS00660	COG1376	ErfK ybiS ycfS ynhG family protein
CKQ55_RS00660	COG1388	LysM domain
CKQ55_RS00670	COG1309	transcriptional regulator
CKQ55_RS00680	COG3134	Outer membrane lipoprotein
CKQ55_RS00685	COG1252	NADH dehydrogenase
CKQ55_RS00715	COG5633	Lipoprotein
CKQ55_RS00720	COG0537	adenosine 5'-monophosphoramidase activity
CKQ55_RS00730	COG4773	Receptor
CKQ55_RS00740	COG0084	hydrolase, TatD family'
CKQ55_RS00745	COG0470	DNA polymerase III
CKQ55_RS00755	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CKQ55_RS00760	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CKQ55_RS00765	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CKQ55_RS00780	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CKQ55_RS00800	COG1399	metal-binding, possibly nucleic acid-binding protein
CKQ55_RS00805	COG0424	maF-like protein
CKQ55_RS00825	COG1530	ribonuclease E activity
CKQ55_RS00830	COG0583	DNA-binding transcription factor activity
CKQ55_RS00835	COG2814	Major facilitator Superfamily
CKQ55_RS00845	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS00855	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CKQ55_RS00865	COG2999	glutathione oxidoreductase activity
CKQ55_RS00905	COG1560	Kdo2-lipid A biosynthetic process
CKQ55_RS00925	COG5645	(Lipo)protein
CKQ55_RS00965	COG3381	protein complex oligomerization
CKQ55_RS00985	COG0583	DNA-binding transcription factor activity
CKQ55_RS00995	COG1335	isochorismatase
CKQ55_RS01015	COG3850	Histidine kinase
CKQ55_RS01015	COG5002	protein histidine kinase activity
CKQ55_RS01035	COG1702	phosphate starvation-inducible protein PhoH
CKQ55_RS01045	COG2822	iron ion transport
CKQ55_RS01055	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CKQ55_RS01065	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CKQ55_RS01085	COG1309	transcriptional regulator
CKQ55_RS01120	COG2233	PERMEase
CKQ55_RS01125	COG3729	General stress protein
CKQ55_RS01155	COG0531	amino acid
CKQ55_RS01165	COG0174	glutamine synthetase
CKQ55_RS01170	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CKQ55_RS01175	COG1917	Cupin 2, conserved barrel domain protein
CKQ55_RS01175	COG1396	sequence-specific DNA binding
CKQ55_RS01180	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS01185	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CKQ55_RS01190	COG0583	DNA-binding transcription factor activity
CKQ55_RS01195	COG0473	3-isopropylmalate dehydrogenase activity
CKQ55_RS01200	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS01200	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CKQ55_RS01200	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS01205	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS01210	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS01215	COG1882	Formate acetyltransferase
CKQ55_RS01220	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CKQ55_RS01225	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS01235	COG2207	Transcriptional regulator
CKQ55_RS01240	COG3706	GGDEF domain
CKQ55_RS01255	COG1605	Chorismate mutase
CKQ55_RS01255	COG0287	Prephenate dehydrogenase
CKQ55_RS01265	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CKQ55_RS01280	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CKQ55_RS01290	COG0765	amino acid transport
CKQ55_RS01345	COG1953	Uracil, thiamine, allantoin
CKQ55_RS01350	COG0402	S-adenosylhomocysteine deaminase activity
CKQ55_RS01355	COG2351	hydroxyisourate hydrolase activity
CKQ55_RS01365	COG2233	PERMEase
CKQ55_RS01370	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CKQ55_RS01440	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CKQ55_RS01450	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CKQ55_RS01465	COG5002	protein histidine kinase activity
CKQ55_RS01470	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS01480	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CKQ55_RS01490	COG1278	Cold shock
CKQ55_RS01495	COG1278	Cold shock
CKQ55_RS01500	COG0471	metal ion transport
CKQ55_RS01515	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
CKQ55_RS01535	COG3052	prosthetic group binding
CKQ55_RS01540	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
CKQ55_RS01545	COG0179	Fumarylacetoacetate (FAA) hydrolase
CKQ55_RS01550	COG2814	Major facilitator Superfamily
CKQ55_RS01555	COG2828	Protein conserved in bacteria
CKQ55_RS01560	COG0583	DNA-binding transcription factor activity
CKQ55_RS01580	COG0765	amino acid transport
CKQ55_RS01585	COG1126	abc transporter atp-binding protein
CKQ55_RS01615	COG0156	8-amino-7-oxononanoate synthase activity
CKQ55_RS01640	COG0604	alcohol dehydrogenase
CKQ55_RS01660	COG1486	melibiose metabolic process
CKQ55_RS01665	COG2207	Transcriptional regulator
CKQ55_RS01675	COG0477	Major facilitator Superfamily
CKQ55_RS01680	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS01690	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS01695	COG0765	amino acid transport
CKQ55_RS01700	COG1126	abc transporter atp-binding protein
CKQ55_RS01705	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CKQ55_RS01715	COG0006	proline dipeptidase activity
CKQ55_RS01720	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CKQ55_RS01725	COG0504	CTP synthase activity
CKQ55_RS01730	COG0436	Aminotransferase
CKQ55_RS01735	COG2188	Transcriptional regulator
CKQ55_RS01745	COG3715	PTS system
CKQ55_RS01750	COG3716	PTS system mannose fructose sorbose family IID component
CKQ55_RS01755	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS01760	COG4821	SIS domain
CKQ55_RS01770	COG4821	SIS domain
CKQ55_RS01795	COG0670	Belongs to the BI1 family
CKQ55_RS01810	COG2207	Transcriptional regulator
CKQ55_RS01815	COG1881	PFAM PEBP family protein
CKQ55_RS01840	COG0438	transferase activity, transferring glycosyl groups
CKQ55_RS01845	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS01850	COG2274	protein secretion by the type I secretion system
CKQ55_RS01865	COG1832	CoA-binding protein
CKQ55_RS01875	COG0210	DNA helicase
CKQ55_RS01880	COG3304	Inner membrane component domain
CKQ55_RS01885	COG1289	transmembrane transporter activity
CKQ55_RS01890	COG3070	regulator of competence-specific genes
CKQ55_RS01915	COG1067	ATP-dependent peptidase activity
CKQ55_RS01925	COG3130	regulation of translation
CKQ55_RS01935	COG3009	Protein conserved in bacteria
CKQ55_RS01940	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CKQ55_RS01940	COG3008	intermembrane lipid transfer
CKQ55_RS01945	COG2995	paraquat-inducible protein a
CKQ55_RS01950	COG0488	(ABC) transporter
CKQ55_RS01960	COG3217	Mosc domain protein beta barrel domain protein
CKQ55_RS01960	COG0633	Ferredoxin
CKQ55_RS01975	COG0431	NADPH-dependent FMN reductase
CKQ55_RS01980	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CKQ55_RS01985	COG1116	anion transmembrane transporter activity
CKQ55_RS01990	COG0308	aminopeptidase N
CKQ55_RS02005	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CKQ55_RS02010	COG1448	Aminotransferase
CKQ55_RS02020	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CKQ55_RS02025	COG3108	Peptidase M15
CKQ55_RS02035	COG2989	Protein conserved in bacteria
CKQ55_RS02045	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
CKQ55_RS02055	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CKQ55_RS02060	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CKQ55_RS02065	COG3173	Aminoglycoside phosphotransferase
CKQ55_RS02080	COG3214	Protein conserved in bacteria
CKQ55_RS02090	COG1132	(ABC) transporter
CKQ55_RS02095	COG0658	competence protein
CKQ55_RS02095	COG2333	competence protein COMEC
CKQ55_RS02105	COG0539	negative regulation of cytoplasmic translation
CKQ55_RS02125	COG2323	membrane
CKQ55_RS02130	COG1944	ATP diphosphatase activity
CKQ55_RS02135	COG2116	formate transmembrane transporter activity
CKQ55_RS02140	COG1882	Formate acetyltransferase
CKQ55_RS02145	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CKQ55_RS02165	COG3959	Transketolase, thiamine diphosphate binding domain
CKQ55_RS02170	COG3958	Transketolase
CKQ55_RS02175	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS02180	COG0477	Major facilitator Superfamily
CKQ55_RS02185	COG3302	dmso reductase anchor subunit
CKQ55_RS02190	COG0437	4 iron, 4 sulfur cluster binding
CKQ55_RS02195	COG0243	molybdopterin cofactor binding
CKQ55_RS02205	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CKQ55_RS02230	COG0492	ferredoxin-NADP+ reductase activity
CKQ55_RS02235	COG4988	ABC transporter
CKQ55_RS02240	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CKQ55_RS02255	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CKQ55_RS02260	COG0542	response to heat
CKQ55_RS02270	COG1278	Cold shock
CKQ55_RS02280	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS02285	COG3593	DNA synthesis involved in DNA repair
CKQ55_RS02290	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CKQ55_RS02295	COG2431	L-lysine efflux transmembrane transporter activity
CKQ55_RS02305	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CKQ55_RS02315	COG0028	Belongs to the TPP enzyme family
CKQ55_RS02320	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
CKQ55_RS02325	COG0702	epimerase
CKQ55_RS02330	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CKQ55_RS02335	COG3023	N-Acetylmuramoyl-L-alanine amidase
CKQ55_RS02340	COG0393	Putative heavy-metal-binding
CKQ55_RS02350	COG1126	abc transporter atp-binding protein
CKQ55_RS02355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS02360	COG4215	(ABC) transporter
CKQ55_RS02365	COG4160	amino acid transport
CKQ55_RS02370	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS02375	COG5002	protein histidine kinase activity
CKQ55_RS02380	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS02395	COG1177	transmembrane transport
CKQ55_RS02400	COG1176	ABC-type spermidine putrescine transport system, permease component I
CKQ55_RS02405	COG3842	ATPase activity
CKQ55_RS02410	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CKQ55_RS02425	COG0778	Nitroreductase
CKQ55_RS02450	COG3226	Transcriptional regulator
CKQ55_RS02455	COG0738	Major facilitator superfamily
CKQ55_RS02460	COG0561	phosphatase activity
CKQ55_RS02465	COG2814	Major facilitator Superfamily
CKQ55_RS02470	COG0671	phosphoesterase, PA-phosphatase related
CKQ55_RS02475	COG1349	DNA-binding transcription factor activity
CKQ55_RS02480	COG1686	Belongs to the peptidase S11 family
CKQ55_RS02590	COG5001	Diguanylate cyclase
CKQ55_RS02590	COG3300	MHYT domain
CKQ55_RS02615	COG3173	Aminoglycoside phosphotransferase
CKQ55_RS02645	COG1695	Transcriptional regulator
CKQ55_RS02865	COG4725	Belongs to the MT-A70-like family
CKQ55_RS02900	COG1846	Transcriptional regulator
CKQ55_RS02920	COG1396	sequence-specific DNA binding
CKQ55_RS02950	COG0582	viral genome integration into host DNA
CKQ55_RS02955	COG0625	glutathione transferase activity
CKQ55_RS02960	COG2133	pyrroloquinoline quinone binding
CKQ55_RS02995	COG0747	negative chemotaxis
CKQ55_RS03005	COG1446	asparaginase
CKQ55_RS03010	COG0303	'Molybdopterin
CKQ55_RS03015	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CKQ55_RS03020	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CKQ55_RS03025	COG1882	Formate acetyltransferase
CKQ55_RS03030	COG0561	phosphatase activity
CKQ55_RS03040	COG1609	Transcriptional regulator
CKQ55_RS03045	COG2271	Major facilitator Superfamily
CKQ55_RS03055	COG0488	(ABC) transporter
CKQ55_RS03065	COG1376	ErfK ybiS ycfS ynhG family protein
CKQ55_RS03070	COG2188	Transcriptional regulator
CKQ55_RS03075	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS03080	COG0667	Aldo Keto reductase
CKQ55_RS03085	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CKQ55_RS03100	COG2194	sulfuric ester hydrolase activity
CKQ55_RS03105	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CKQ55_RS03120	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS03125	COG0765	amino acid transport
CKQ55_RS03130	COG1126	abc transporter atp-binding protein
CKQ55_RS03140	COG0668	transmembrane transport
CKQ55_RS03155	COG4774	siderophore transport
CKQ55_RS03165	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CKQ55_RS03175	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CKQ55_RS03185	COG0513	Belongs to the DEAD box helicase family
CKQ55_RS03190	COG3958	Transketolase
CKQ55_RS03195	COG3959	Transketolase, thiamine diphosphate binding domain
CKQ55_RS03200	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS03205	COG2271	Major facilitator Superfamily
CKQ55_RS03215	COG0583	DNA-binding transcription factor activity
CKQ55_RS03220	COG1309	transcriptional regulator
CKQ55_RS03225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS03230	COG1131	(ABC) transporter
CKQ55_RS03235	COG0842	Transport permease protein
CKQ55_RS03240	COG0842	Transport permease protein
CKQ55_RS03250	COG3568	Endonuclease Exonuclease Phosphatase
CKQ55_RS03255	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CKQ55_RS03260	COG0392	lysyltransferase activity
CKQ55_RS03265	COG0670	Belongs to the BI1 family
CKQ55_RS03270	COG0314	molybdopterin synthase activity
CKQ55_RS03275	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CKQ55_RS03285	COG0521	Mo-molybdopterin cofactor biosynthetic process
CKQ55_RS03305	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS03340	COG2226	methyltransferase
CKQ55_RS03355	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CKQ55_RS03360	COG1881	PFAM PEBP family protein
CKQ55_RS03390	COG4677	pectinesterase activity
CKQ55_RS03405	COG0789	Transcriptional regulator
CKQ55_RS03410	COG2200	EAL domain
CKQ55_RS03445	COG0561	phosphatase activity
CKQ55_RS03455	COG4149	molybdate abc transporter
CKQ55_RS03460	COG0725	ABC transporter, periplasmic molybdate-binding protein
CKQ55_RS03470	COG2005	Transcriptional regulator
CKQ55_RS03470	COG3585	molybdate ion transport
CKQ55_RS03480	COG1119	ATPase activity
CKQ55_RS03485	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CKQ55_RS03490	COG1085	galactose-1-phosphate uridylyltransferase
CKQ55_RS03500	COG2017	converts alpha-aldose to the beta-anomer
CKQ55_RS03510	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CKQ55_RS03530	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CKQ55_RS03565	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CKQ55_RS03570	COG2885	chlorophyll binding
CKQ55_RS03580	COG3064	Membrane
CKQ55_RS03585	COG0848	biopolymer transport protein
CKQ55_RS03590	COG0811	peptide transport
CKQ55_RS03595	COG0824	Thioesterase
CKQ55_RS03600	COG3790	cyd operon protein YbgE
CKQ55_RS03610	COG4890	Cyd operon protein YbgT
CKQ55_RS03615	COG1294	oxidase, subunit
CKQ55_RS03620	COG1271	oxidase subunit
CKQ55_RS03625	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CKQ55_RS03635	COG4865	methylaspartate mutase activity
CKQ55_RS03640	COG3799	methylaspartate ammonia-lyase activity
CKQ55_RS03660	COG1301	dicarboxylic acid transport
CKQ55_RS03670	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CKQ55_RS03670	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CKQ55_RS03705	COG0583	DNA-binding transcription factor activity
CKQ55_RS03715	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CKQ55_RS03725	COG0508	dehydrogenase complex catalyzes the overall conversion of
CKQ55_RS03730	COG0567	Dehydrogenase, E1 component
CKQ55_RS03735	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CKQ55_RS03740	COG1053	succinate dehydrogenase
CKQ55_RS03745	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CKQ55_RS03760	COG0372	Belongs to the citrate synthase family
CKQ55_RS03790	COG1984	allophanate hydrolase subunit 2
CKQ55_RS03795	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CKQ55_RS03800	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CKQ55_RS03810	COG0415	Belongs to the DNA photolyase family
CKQ55_RS03840	COG2205	protein histidine kinase activity
CKQ55_RS03845	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS03855	COG3623	hexulose-6-phosphate isomerase
CKQ55_RS03860	COG1070	Carbohydrate kinase
CKQ55_RS03865	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS03870	COG1129	ABC transporter
CKQ55_RS03875	COG1879	ABC-type sugar transport system periplasmic component
CKQ55_RS03880	COG1063	alcohol dehydrogenase
CKQ55_RS03885	COG1349	DNA-binding transcription factor activity
CKQ55_RS03895	COG0033	Phosphoglucomutase
CKQ55_RS03900	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
CKQ55_RS03905	COG0596	Alpha beta hydrolase
CKQ55_RS03920	COG0735	belongs to the Fur family
CKQ55_RS03925	COG0583	DNA-binding transcription factor activity
CKQ55_RS03930	COG1053	succinate dehydrogenase
CKQ55_RS03980	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CKQ55_RS03985	COG1846	Transcriptional regulator
CKQ55_RS03985	COG1940	carbohydrate kinase activity
CKQ55_RS03990	COG0647	UMP catabolic process
CKQ55_RS03995	COG0367	asparagine synthase
CKQ55_RS04035	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CKQ55_RS04045	COG1702	phosphate starvation-inducible protein PhoH
CKQ55_RS04050	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CKQ55_RS04055	COG4535	Mg2 and Co2 transporter CorC
CKQ55_RS04070	COG0765	amino acid transport
CKQ55_RS04075	COG0765	amino acid transport
CKQ55_RS04080	COG1126	abc transporter atp-binding protein
CKQ55_RS04085	COG2831	hemolysin activation secretion protein
CKQ55_RS04095	COG2888	peptidyl-tyrosine sulfation
CKQ55_RS04110	COG1466	dna polymerase III delta subunit
CKQ55_RS04130	COG0799	negative regulation of ribosome biogenesis
CKQ55_RS04140	COG0768	penicillin binding
CKQ55_RS04145	COG0772	Belongs to the SEDS family
CKQ55_RS04150	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CKQ55_RS04155	COG1686	Belongs to the peptidase S11 family
CKQ55_RS04170	COG0583	DNA-binding transcription factor activity
CKQ55_RS04180	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CKQ55_RS04185	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CKQ55_RS04205	COG3069	C4-dicarboxylate transmembrane transporter activity
CKQ55_RS04210	COG3719	Belongs to the RNase T2 family
CKQ55_RS04215	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CKQ55_RS04225	COG3634	alkyl hydroperoxide reductase activity
CKQ55_RS04240	COG0583	DNA-binding transcription factor activity
CKQ55_RS04245	COG3969	phosphoadenosine phosphosulfate
CKQ55_RS04250	COG1475	DNA binding
CKQ55_RS04255	COG0436	Aminotransferase
CKQ55_RS04260	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
CKQ55_RS04265	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
CKQ55_RS04280	COG1129	ABC transporter
CKQ55_RS04290	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS04300	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CKQ55_RS04315	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CKQ55_RS04325	COG0402	S-adenosylhomocysteine deaminase activity
CKQ55_RS04335	COG0483	inositol monophosphate 1-phosphatase activity
CKQ55_RS04340	COG2271	Major facilitator Superfamily
CKQ55_RS04375	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS04380	COG1129	ABC transporter
CKQ55_RS04385	COG0371	Dehydrogenase
CKQ55_RS04400	COG2879	small protein
CKQ55_RS04405	COG1966	Carbon starvation protein
CKQ55_RS04420	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS04425	COG3433	isochorismatase activity
CKQ55_RS04425	COG1535	isochorismatase
CKQ55_RS04430	COG1021	2,3-dihydroxybenzoate-AMP ligase
CKQ55_RS04435	COG1169	isochorismate synthase
CKQ55_RS04440	COG4592	Periplasmic binding protein
CKQ55_RS04455	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS04460	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS04465	COG1120	ATPase activity
CKQ55_RS04470	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CKQ55_RS04470	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CKQ55_RS04475	COG3251	PFAM MbtH domain protein
CKQ55_RS04480	COG2382	esterase
CKQ55_RS04490	COG4771	TonB-dependent receptor
CKQ55_RS04495	COG2977	Belongs to the P-Pant transferase superfamily
CKQ55_RS04500	COG3958	Transketolase
CKQ55_RS04505	COG3959	Transketolase, thiamine diphosphate binding domain
CKQ55_RS04510	COG2390	Transcriptional regulator
CKQ55_RS04515	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CKQ55_RS04525	COG1879	ABC-type sugar transport system periplasmic component
CKQ55_RS04535	COG1129	ABC transporter
CKQ55_RS04540	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS04550	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS04560	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CKQ55_RS04595	COG0601	transmembrane transport
CKQ55_RS04600	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CKQ55_RS04605	COG0444	Belongs to the ABC transporter superfamily
CKQ55_RS04610	COG4608	Belongs to the ABC transporter superfamily
CKQ55_RS04615	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CKQ55_RS04620	COG4221	oxidoreductase activity
CKQ55_RS04630	COG0765	amino acid transport
CKQ55_RS04635	COG0765	amino acid transport
CKQ55_RS04650	COG1280	lysine exporter protein (LysE YggA)
CKQ55_RS04675	COG0154	amidase activity
CKQ55_RS04680	COG0444	Belongs to the ABC transporter superfamily
CKQ55_RS04685	COG4608	Belongs to the ABC transporter superfamily
CKQ55_RS04690	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CKQ55_RS04710	COG3698	Phosphodiester glycosidase
CKQ55_RS04740	COG4774	siderophore transport
CKQ55_RS04775	COG2315	Protein conserved in bacteria
CKQ55_RS04780	COG0778	Nitroreductase
CKQ55_RS04870	COG1621	beta-fructofuranosidase activity
CKQ55_RS04870	COG1621	beta-fructofuranosidase activity
CKQ55_RS04875	COG3716	PTS system mannose fructose sorbose family IID component
CKQ55_RS04880	COG3715	PTS system
CKQ55_RS04885	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS04890	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS04890	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS04900	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CKQ55_RS04900	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CKQ55_RS04910	COG0477	Major facilitator Superfamily
CKQ55_RS04915	COG0668	transmembrane transport
CKQ55_RS04925	COG0494	nUDIX hydrolase
CKQ55_RS04945	COG3188	usher protein
CKQ55_RS04960	COG2771	luxR family
CKQ55_RS04965	COG0583	DNA-binding transcription factor activity
CKQ55_RS04970	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS04990	COG2211	Major facilitator Superfamily
CKQ55_RS04995	COG1113	amino acid transport
CKQ55_RS05005	COG0667	Aldo Keto reductase
CKQ55_RS05010	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS05015	COG1473	amidohydrolase
CKQ55_RS05040	COG4139	cobalamin transport
CKQ55_RS05045	COG1120	ATPase activity
CKQ55_RS05085	COG3711	transcriptional antiterminator
CKQ55_RS05090	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS05095	COG2190	(PTS) system
CKQ55_RS05095	COG1263	PTS System
CKQ55_RS05095	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS05100	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS05105	COG1129	ABC transporter
CKQ55_RS05120	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS05130	COG2367	Beta-lactamase
CKQ55_RS05150	COG3104	oligopeptide transport
CKQ55_RS05160	COG0531	amino acid
CKQ55_RS05170	COG3710	Transcriptional regulator
CKQ55_RS05180	COG0583	DNA-binding transcription factor activity
CKQ55_RS05190	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CKQ55_RS05200	COG2808	Putative FMN-binding domain
CKQ55_RS05205	COG0582	viral genome integration into host DNA
CKQ55_RS05340	COG0582	viral genome integration into host DNA
CKQ55_RS05365	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CKQ55_RS05370	COG5301	cellulose 1,4-beta-cellobiosidase activity
CKQ55_RS05370	COG5301	cellulose 1,4-beta-cellobiosidase activity
CKQ55_RS05495	COG1783	phage Terminase large subunit
CKQ55_RS05545	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CKQ55_RS05705	COG0582	viral genome integration into host DNA
CKQ55_RS05720	COG2501	S4 domain
CKQ55_RS05730	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CKQ55_RS05745	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CKQ55_RS05750	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CKQ55_RS05770	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CKQ55_RS05775	COG4181	ATPase activity
CKQ55_RS05780	COG2755	lipolytic protein G-D-S-L family
CKQ55_RS05785	COG0300	oxidoreductase activity
CKQ55_RS05790	COG3118	belongs to the thioredoxin family
CKQ55_RS05795	COG0390	transport system, permease component
CKQ55_RS05800	COG4619	ABC transporter
CKQ55_RS05805	COG0330	HflC and HflK could
CKQ55_RS05810	COG1585	Membrane protein implicated in regulation of membrane protease activity
CKQ55_RS05840	COG0811	peptide transport
CKQ55_RS05860	COG3735	TraB family
CKQ55_RS05865	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CKQ55_RS05875	COG2223	nitrite transmembrane transporter activity
CKQ55_RS05880	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CKQ55_RS05880	COG4651	solute:proton antiporter activity
CKQ55_RS05885	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS05925	COG2832	Protein of unknown function (DUF454)
CKQ55_RS05930	COG3923	Primosomal replication protein n
CKQ55_RS05945	COG3264	Mechanosensitive ion channel
CKQ55_RS05945	COG1196	nuclear chromosome segregation
CKQ55_RS05950	COG1309	transcriptional regulator
CKQ55_RS05955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS05960	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CKQ55_RS05975	COG0110	maltose O-acetyltransferase activity
CKQ55_RS05995	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CKQ55_RS06015	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS06015	COG1263	PTS System
CKQ55_RS06020	COG1874	Beta-galactosidase
CKQ55_RS06025	COG3867	Arabinogalactan endo-beta-1,4-galactanase
CKQ55_RS06030	COG3833	ABC-type maltose transport systems, permease component
CKQ55_RS06035	COG1175	transmembrane transport
CKQ55_RS06040	COG2182	Extracellular solute-binding protein
CKQ55_RS06050	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CKQ55_RS06065	COG5507	3-demethylubiquinone-9 3-methyltransferase
CKQ55_RS06070	COG2364	Membrane
CKQ55_RS06100	COG3695	enzyme binding
CKQ55_RS06105	COG3126	Type III secretion system lipoprotein chaperone (YscW)
CKQ55_RS06110	COG1946	Acyl-CoA thioesterase
CKQ55_RS06115	COG0004	ammonium transporteR
CKQ55_RS06120	COG0347	Belongs to the P(II) protein family
CKQ55_RS06130	COG1132	(ABC) transporter
CKQ55_RS06135	COG1132	(ABC) transporter
CKQ55_RS06140	COG1522	sequence-specific DNA binding
CKQ55_RS06155	COG4533	DNA binding
CKQ55_RS06165	COG0824	Thioesterase
CKQ55_RS06170	COG1555	photosystem II stabilization
CKQ55_RS06180	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CKQ55_RS06185	COG0776	regulation of translation
CKQ55_RS06190	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CKQ55_RS06220	COG0271	Belongs to the BolA IbaG family
CKQ55_RS06225	COG3056	Lipoprotein
CKQ55_RS06230	COG2223	nitrite transmembrane transporter activity
CKQ55_RS06235	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CKQ55_RS06240	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CKQ55_RS06245	COG1845	cytochrome c oxidase, subunit III
CKQ55_RS06250	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CKQ55_RS06265	COG1414	Transcriptional regulator
CKQ55_RS06275	COG1053	succinate dehydrogenase
CKQ55_RS06305	COG2211	Major facilitator Superfamily
CKQ55_RS06310	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS06315	COG2814	Major facilitator Superfamily
CKQ55_RS06325	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CKQ55_RS06345	COG0142	geranyltranstransferase activity
CKQ55_RS06355	COG0667	Aldo Keto reductase
CKQ55_RS06360	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CKQ55_RS06380	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CKQ55_RS06380	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CKQ55_RS06390	COG4238	major outer membrane lipoprotein
CKQ55_RS06420	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CKQ55_RS06425	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CKQ55_RS06430	COG1862	Preprotein translocase
CKQ55_RS06445	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
CKQ55_RS06450	COG0450	alkyl hydroperoxide reductase
CKQ55_RS06465	COG1574	metal-dependent hydrolase with the TIM-barrel fold
CKQ55_RS06475	COG1335	isochorismatase
CKQ55_RS06480	COG0583	DNA-binding transcription factor activity
CKQ55_RS06485	COG0366	Alpha amylase catalytic
CKQ55_RS06510	COG0420	3'-5' exonuclease activity
CKQ55_RS06515	COG0419	ATPase involved in DNA repair
CKQ55_RS06525	COG1940	carbohydrate kinase activity
CKQ55_RS06540	COG4126	flavin adenine dinucleotide binding
CKQ55_RS06550	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CKQ55_RS06555	COG3416	Protein conserved in bacteria
CKQ55_RS06565	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CKQ55_RS06575	COG1785	Belongs to the alkaline phosphatase family
CKQ55_RS06585	COG1609	Transcriptional regulator
CKQ55_RS06595	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS06630	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CKQ55_RS06640	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CKQ55_RS06645	COG0113	porphobilinogen synthase activity
CKQ55_RS06650	COG1943	Transposase
CKQ55_RS06660	COG2175	clavaminate synthase activity
CKQ55_RS06665	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CKQ55_RS06670	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CKQ55_RS06675	COG4521	taurine ABC transporter
CKQ55_RS06690	COG2271	Major facilitator Superfamily
CKQ55_RS06695	COG1840	ABC-type Fe3 transport system, periplasmic component
CKQ55_RS06705	COG3842	ATPase activity
CKQ55_RS06710	COG2040	homocysteine
CKQ55_RS06715	COG0833	amino acid
CKQ55_RS06730	COG4303	Ethanolamine ammonia lyase large subunit
CKQ55_RS06735	COG4302	ethanolamine ammonia-lyase activity
CKQ55_RS06770	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS06775	COG1126	abc transporter atp-binding protein
CKQ55_RS06780	COG0765	amino acid transport
CKQ55_RS06785	COG0765	amino acid transport
CKQ55_RS06800	COG3188	usher protein
CKQ55_RS06835	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
CKQ55_RS06845	COG3639	organic phosphonate transmembrane transporter activity
CKQ55_RS06865	COG3118	belongs to the thioredoxin family
CKQ55_RS06880	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CKQ55_RS06885	COG0583	DNA-binding transcription factor activity
CKQ55_RS06890	COG0791	NLP P60 protein
CKQ55_RS06895	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CKQ55_RS06900	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CKQ55_RS06905	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CKQ55_RS06915	COG0582	viral genome integration into host DNA
CKQ55_RS06980	COG1309	transcriptional regulator
CKQ55_RS06995	COG2814	Major facilitator Superfamily
CKQ55_RS07010	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CKQ55_RS07040	COG2986	histidine ammonia-lyase
CKQ55_RS07050	COG2188	Transcriptional regulator
CKQ55_RS07055	COG0402	S-adenosylhomocysteine deaminase activity
CKQ55_RS07060	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CKQ55_RS07070	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CKQ55_RS07080	COG0477	Major facilitator Superfamily
CKQ55_RS07135	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CKQ55_RS07140	COG3153	acetyltransferase
CKQ55_RS07155	COG0246	Mannitol dehydrogenase
CKQ55_RS07160	COG2186	Transcriptional regulator
CKQ55_RS07180	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS07195	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CKQ55_RS07205	COG1596	polysaccharide export
CKQ55_RS07225	COG0463	Glycosyl transferase, family 2
CKQ55_RS07230	COG0438	transferase activity, transferring glycosyl groups
CKQ55_RS07235	COG0297	glycogen (starch) synthase activity
CKQ55_RS07235	COG0438	transferase activity, transferring glycosyl groups
CKQ55_RS07250	COG1045	serine acetyltransferase
CKQ55_RS07270	COG2195	Cleaves the N-terminal amino acid of tripeptides
CKQ55_RS07275	COG0454	-acetyltransferase
CKQ55_RS07290	COG2991	Protein conserved in bacteria
CKQ55_RS07305	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CKQ55_RS07310	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CKQ55_RS07325	COG3034	peptidoglycan biosynthetic process
CKQ55_RS07330	COG0121	glutamine amidotransferase
CKQ55_RS07350	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CKQ55_RS07370	COG2226	methyltransferase
CKQ55_RS07380	COG1388	LysM domain
CKQ55_RS07380	COG0741	lytic transglycosylase activity
CKQ55_RS07385	COG2226	methyltransferase
CKQ55_RS07395	COG2814	Major facilitator Superfamily
CKQ55_RS07400	COG0583	DNA-binding transcription factor activity
CKQ55_RS07445	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CKQ55_RS07455	COG2011	ABC-type metal ion transport system permease component
CKQ55_RS07460	COG1464	Belongs to the NlpA lipoprotein family
CKQ55_RS07470	COG1720	tRNA m6t6A37 methyltransferase activity
CKQ55_RS07480	COG0791	NLP P60 protein
CKQ55_RS07485	COG3015	lipoprotein NlpE involved in copper resistance
CKQ55_RS07490	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CKQ55_RS07495	COG4681	YaeQ
CKQ55_RS07505	COG4568	rho-dependent transcription termination
CKQ55_RS07515	COG0346	lactoylglutathione lyase activity
CKQ55_RS07520	COG1982	Orn Lys Arg decarboxylase major
CKQ55_RS07560	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CKQ55_RS07565	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
CKQ55_RS07575	COG0750	zinc metalloprotease
CKQ55_RS07580	COG0575	Belongs to the CDS family
CKQ55_RS07610	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CKQ55_RS07620	COG0024	Methionine aminopeptidase
CKQ55_RS07630	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CKQ55_RS07650	COG3835	regulator
CKQ55_RS07655	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CKQ55_RS07675	COG2860	membrane
CKQ55_RS07695	COG5464	transposase or invertase
CKQ55_RS07700	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS07705	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CKQ55_RS07710	COG1120	ATPase activity
CKQ55_RS07720	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CKQ55_RS07810	COG1643	Atp-dependent helicase
CKQ55_RS07815	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CKQ55_RS07835	COG0617	tRNA 3'-terminal CCA addition
CKQ55_RS07840	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CKQ55_RS07865	COG3121	Chaperone
CKQ55_RS07870	COG3188	usher protein
CKQ55_RS07895	COG0726	polysaccharide deacetylase
CKQ55_RS07900	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS07905	COG0842	Transport permease protein
CKQ55_RS07910	COG1131	(ABC) transporter
CKQ55_RS07915	COG0288	reversible hydration of carbon dioxide
CKQ55_RS07925	COG4993	Dehydrogenase
CKQ55_RS07930	COG2132	Multicopper oxidase
CKQ55_RS07945	COG0545	Peptidyl-prolyl cis-trans isomerase
CKQ55_RS07960	COG1349	DNA-binding transcription factor activity
CKQ55_RS07990	COG3064	Membrane
CKQ55_RS08005	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CKQ55_RS08010	COG0508	dehydrogenase complex catalyzes the overall conversion of
CKQ55_RS08015	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CKQ55_RS08020	COG2186	Transcriptional regulator
CKQ55_RS08025	COG1113	amino acid transport
CKQ55_RS08030	COG2211	Major facilitator Superfamily
CKQ55_RS08035	COG3940	Belongs to the glycosyl hydrolase 43 family
CKQ55_RS08040	COG3725	Membrane protein required for beta-lactamase induction
CKQ55_RS08055	COG4969	Belongs to the N-Me-Phe pilin family
CKQ55_RS08060	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CKQ55_RS08065	COG1459	type II secretion system
CKQ55_RS08085	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CKQ55_RS08090	COG0494	nUDIX hydrolase
CKQ55_RS08110	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CKQ55_RS08115	COG0849	cell division
CKQ55_RS08140	COG0772	Belongs to the SEDS family
CKQ55_RS08155	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CKQ55_RS08165	COG0768	penicillin binding
CKQ55_RS08190	COG1609	Transcriptional regulator
CKQ55_RS08200	COG0028	Belongs to the TPP enzyme family
CKQ55_RS08215	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CKQ55_RS08240	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CKQ55_RS08245	COG0738	Major facilitator superfamily
CKQ55_RS08255	COG0583	DNA-binding transcription factor activity
CKQ55_RS08260	COG2271	Major facilitator Superfamily
CKQ55_RS08265	COG2814	Major facilitator Superfamily
CKQ55_RS08285	COG1178	ABC-type Fe3 transport system permease component
CKQ55_RS08295	COG0586	Pfam SNARE associated Golgi protein
CKQ55_RS08315	COG0235	Class ii aldolase
CKQ55_RS08320	COG0417	DNA replication proofreading
CKQ55_RS08330	COG0564	pseudouridine synthase activity
CKQ55_RS08340	COG3493	citrate carrier protein
CKQ55_RS08355	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CKQ55_RS08470	COG5016	pyruvate
CKQ55_RS08470	COG0511	ligase activity, forming carbon-carbon bonds
CKQ55_RS08490	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CKQ55_RS08500	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CKQ55_RS08505	COG0471	metal ion transport
CKQ55_RS08510	COG0471	metal ion transport
CKQ55_RS08515	COG2828	Protein conserved in bacteria
CKQ55_RS08520	COG0583	DNA-binding transcription factor activity
CKQ55_RS08535	COG1047	Peptidyl-prolyl cis-trans
CKQ55_RS08550	COG0196	riboflavin kinase activity
CKQ55_RS08565	COG0583	DNA-binding transcription factor activity
CKQ55_RS08625	COG4735	regulation of single-species biofilm formation
CKQ55_RS08630	COG1584	GPR1 FUN34 yaaH family protein
CKQ55_RS08635	COG0477	Major facilitator Superfamily
CKQ55_RS08640	COG0521	Mo-molybdopterin cofactor biosynthetic process
CKQ55_RS08645	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CKQ55_RS08650	COG1115	amino acid carrier protein
CKQ55_RS08660	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CKQ55_RS08670	COG0527	aspartate kinase activity
CKQ55_RS08670	COG0460	homoserine dehydrogenase
CKQ55_RS08680	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
CKQ55_RS08690	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS08695	COG4452	Inner membrane protein CreD
CKQ55_RS08700	COG2205	protein histidine kinase activity
CKQ55_RS08705	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS08710	COG3045	CreA protein
CKQ55_RS08715	COG3708	Transcriptional regulator
CKQ55_RS08715	COG2207	Transcriptional regulator
CKQ55_RS08735	COG0741	lytic transglycosylase activity
CKQ55_RS08740	COG0488	(ABC) transporter
CKQ55_RS08755	COG0560	Phosphoserine phosphatase
CKQ55_RS08765	COG3726	membrane protein affecting hemolysin expression
CKQ55_RS08775	COG0813	purine-nucleoside phosphorylase activity
CKQ55_RS08795	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CKQ55_RS08800	COG0084	hydrolase, TatD family'
CKQ55_RS08805	COG4667	esterase of the alpha-beta hydrolase superfamily
CKQ55_RS08810	COG5487	UPF0391 membrane protein
CKQ55_RS08815	COG2823	Periplasmic or secreted lipoprotein
CKQ55_RS08825	COG1011	Hydrolase
CKQ55_RS08830	COG0456	acetyltransferase
CKQ55_RS08835	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
CKQ55_RS08865	COG3706	GGDEF domain
CKQ55_RS08870	COG4114	ferric iron reductase
CKQ55_RS08875	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS08880	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CKQ55_RS08885	COG2197	response regulator
CKQ55_RS08890	COG2197	response regulator
CKQ55_RS08895	COG2207	Transcriptional regulator
CKQ55_RS08905	COG2966	Psort location CytoplasmicMembrane, score
CKQ55_RS08920	COG1484	DNA-dependent DNA replication
CKQ55_RS08935	COG5464	transposase or invertase
CKQ55_RS08940	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CKQ55_RS08945	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CKQ55_RS08950	COG3716	PTS system mannose fructose sorbose family IID component
CKQ55_RS08955	COG3715	PTS system
CKQ55_RS08970	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CKQ55_RS08970	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CKQ55_RS08985	COG1063	alcohol dehydrogenase
CKQ55_RS08990	COG1802	Transcriptional regulator
CKQ55_RS08995	COG2271	Major facilitator Superfamily
CKQ55_RS09005	COG2271	Major facilitator Superfamily
CKQ55_RS09010	COG0456	acetyltransferase
CKQ55_RS09020	COG1737	Transcriptional regulator
CKQ55_RS09025	COG0800	Aldolase
CKQ55_RS09030	COG3734	2-keto-3-deoxy-galactonokinase
CKQ55_RS09035	COG4145	pantothenate transmembrane transporter activity
CKQ55_RS09045	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CKQ55_RS09055	COG1846	Transcriptional regulator
CKQ55_RS09060	COG0179	Fumarylacetoacetate (FAA) hydrolase
CKQ55_RS09070	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS09075	COG3384	dioxygenase
CKQ55_RS09085	COG3971	2-oxopent-4-enoate hydratase activity
CKQ55_RS09105	COG2368	4-hydroxyphenylacetate
CKQ55_RS09110	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CKQ55_RS09115	COG1966	Carbon starvation protein
CKQ55_RS09120	COG2879	small protein
CKQ55_RS09125	COG0523	cobalamin synthesis protein
CKQ55_RS09140	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS09145	COG5464	transposase or invertase
CKQ55_RS09155	COG1280	lysine exporter protein (LysE YggA)
CKQ55_RS09160	COG2733	membrane
CKQ55_RS09165	COG2814	Major facilitator Superfamily
CKQ55_RS09170	COG1475	DNA binding
CKQ55_RS09175	COG3969	phosphoadenosine phosphosulfate
CKQ55_RS09185	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CKQ55_RS09190	COG1924	4 iron, 4 sulfur cluster binding
CKQ55_RS09200	COG1473	amidohydrolase
CKQ55_RS09205	COG0700	Nucleoside recognition
CKQ55_RS09210	COG3366	ferrous iron transmembrane transporter activity
CKQ55_RS09215	COG0583	DNA-binding transcription factor activity
CKQ55_RS09225	COG1566	PFAM secretion protein HlyD family protein
CKQ55_RS09240	COG5457	Domain of unknown function (DUF1127)
CKQ55_RS09245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CKQ55_RS09250	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
CKQ55_RS09260	COG0732	type I restriction modification DNA specificity domain
CKQ55_RS09275	COG0531	amino acid
CKQ55_RS09300	COG2249	NAD(P)H dehydrogenase (quinone) activity
CKQ55_RS09335	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS09335	COG1454	alcohol dehydrogenase
CKQ55_RS09350	COG1882	Formate acetyltransferase
CKQ55_RS09355	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CKQ55_RS09365	COG4869	propanediol catabolic process
CKQ55_RS09395	COG0814	amino acid
CKQ55_RS09405	COG3706	GGDEF domain
CKQ55_RS09410	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS09415	COG0842	Transport permease protein
CKQ55_RS09415	COG1129	ABC transporter
CKQ55_RS09420	COG0842	Transport permease protein
CKQ55_RS09455	COG2850	peptidyl-arginine hydroxylation
CKQ55_RS09460	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CKQ55_RS09475	COG0477	Major facilitator Superfamily
CKQ55_RS09490	COG4948	Mandelate Racemase Muconate Lactonizing
CKQ55_RS09495	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS09500	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CKQ55_RS09565	COG2003	Belongs to the UPF0758 family
CKQ55_RS09590	COG4983	Phage plasmid primase, P4 family domain protein
CKQ55_RS09600	COG3311	Transcriptional regulator
CKQ55_RS09610	COG3385	transposase activity
CKQ55_RS09620	COG4372	Transposase
CKQ55_RS09660	COG3539	Fimbrial protein
CKQ55_RS09675	COG4372	Transposase
CKQ55_RS09695	COG0246	Mannitol dehydrogenase
CKQ55_RS09710	COG4372	Transposase
CKQ55_RS09725	COG4372	Transposase
CKQ55_RS09735	COG4598	ABC transporter
CKQ55_RS09740	COG0765	amino acid transport
CKQ55_RS09745	COG0765	amino acid transport
CKQ55_RS09755	COG0583	DNA-binding transcription factor activity
CKQ55_RS09815	COG2801	Transposase and inactivated derivatives
CKQ55_RS09825	COG3344	reverse transcriptase
CKQ55_RS09885	COG0582	viral genome integration into host DNA
CKQ55_RS09905	COG1064	alcohol dehydrogenase
CKQ55_RS09910	COG1175	transmembrane transport
CKQ55_RS09915	COG0395	ABC-type sugar transport system, permease component
CKQ55_RS09920	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CKQ55_RS09925	COG3842	ATPase activity
CKQ55_RS09945	COG1082	Xylose isomerase domain protein TIM barrel
CKQ55_RS09955	COG3962	Belongs to the TPP enzyme family
CKQ55_RS09960	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS09965	COG1737	Transcriptional regulator
CKQ55_RS09965	COG0837	glucose binding
CKQ55_RS09970	COG3718	enzyme involved in inositol metabolism
CKQ55_RS09985	COG0433	COG0433 Predicted ATPase
CKQ55_RS09990	COG0795	lipopolysaccharide-transporting ATPase activity
CKQ55_RS09995	COG0795	lipopolysaccharide-transporting ATPase activity
CKQ55_RS10015	COG2927	DNA polymerase III (CHI subunit)
CKQ55_RS10020	COG0525	valine-tRNA ligase activity
CKQ55_RS10045	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CKQ55_RS10050	COG2731	YhcH YjgK YiaL family protein
CKQ55_RS10070	COG3397	chitin binding
CKQ55_RS10075	COG0251	oxidation-reduction process
CKQ55_RS10095	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS10095	COG1263	PTS System
CKQ55_RS10100	COG0366	Alpha amylase catalytic
CKQ55_RS10105	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS10110	COG1486	melibiose metabolic process
CKQ55_RS10130	COG0602	queuosine metabolic process
CKQ55_RS10155	COG3711	transcriptional antiterminator
CKQ55_RS10155	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS10160	COG2706	6-phosphogluconolactonase activity
CKQ55_RS10175	COG3964	amidohydrolase
CKQ55_RS10210	COG0312	modulator of DNA gyrase
CKQ55_RS10220	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS10240	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CKQ55_RS10250	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS10255	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS10260	COG1129	ABC transporter
CKQ55_RS10265	COG1879	ABC-type sugar transport system periplasmic component
CKQ55_RS10275	COG2105	PFAM AIG2 family protein
CKQ55_RS10280	COG2911	Protein conserved in bacteria
CKQ55_RS10285	COG0729	surface antigen
CKQ55_RS10295	COG1253	flavin adenine dinucleotide binding
CKQ55_RS10320	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CKQ55_RS10335	COG1733	regulation of RNA biosynthetic process
CKQ55_RS10340	COG0702	epimerase
CKQ55_RS10350	COG0697	spore germination
CKQ55_RS10360	COG1113	amino acid transport
CKQ55_RS10365	COG0545	Peptidyl-prolyl cis-trans isomerase
CKQ55_RS10375	COG3061	Opacity-associated protein A
CKQ55_RS10385	COG0359	binds to the 23S rRNA
CKQ55_RS10390	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CKQ55_RS10395	COG2965	DNA replication, synthesis of RNA primer
CKQ55_RS10455	COG1073	alpha beta
CKQ55_RS10460	COG3650	response to hydrogen peroxide
CKQ55_RS10470	COG1960	acyl-CoA dehydrogenase activity
CKQ55_RS10480	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CKQ55_RS10485	COG0557	exoribonuclease II activity
CKQ55_RS10500	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
CKQ55_RS10505	COG0330	HflC and HflK could
CKQ55_RS10510	COG0330	HflC and HflK could
CKQ55_RS10515	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CKQ55_RS10535	COG0860	N-Acetylmuramoyl-L-alanine amidase
CKQ55_RS10540	COG0802	atpase or kinase
CKQ55_RS10545	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CKQ55_RS10545	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CKQ55_RS10550	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CKQ55_RS10570	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS10575	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CKQ55_RS10595	COG1511	domain protein
CKQ55_RS10595	COG3264	Mechanosensitive ion channel
CKQ55_RS10610	COG1053	succinate dehydrogenase
CKQ55_RS10615	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CKQ55_RS10630	COG3040	lipid binding
CKQ55_RS10635	COG2076	Multidrug Resistance protein
CKQ55_RS10655	COG1509	lysine 2,3-aminomutase activity
CKQ55_RS10670	COG3121	Chaperone
CKQ55_RS10710	COG0459	protein refolding
CKQ55_RS10720	COG0531	amino acid
CKQ55_RS10725	COG3030	protein affecting phage T7 exclusion by the F plasmid
CKQ55_RS10735	COG1027	Aspartate ammonia-lyase
CKQ55_RS10740	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CKQ55_RS10755	COG1309	transcriptional regulator
CKQ55_RS10770	COG1216	Glycosyl transferase, family 2
CKQ55_RS10785	COG2249	NAD(P)H dehydrogenase (quinone) activity
CKQ55_RS10800	COG0861	Integral membrane protein TerC family
CKQ55_RS10820	COG2824	Alkylphosphonate utilization operon protein PhnA
CKQ55_RS10825	COG2764	glyoxalase bleomycin resistance protein dioxygenase
CKQ55_RS10830	COG2188	Transcriptional regulator
CKQ55_RS10835	COG3624	Phosphonate C-P lyase system protein PhnG
CKQ55_RS10840	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
CKQ55_RS10845	COG3626	phosphonate metabolism
CKQ55_RS10850	COG3627	carbon phosphorus lyase activity
CKQ55_RS10855	COG4107	phosphonate C-P lyase system protein PhnK
CKQ55_RS10860	COG4778	phosphonate C-P lyase system protein PhnL
CKQ55_RS10865	COG3454	Phosphonate metabolism
CKQ55_RS10870	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
CKQ55_RS10875	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CKQ55_RS10885	COG0698	ribose 5-phosphate isomerase
CKQ55_RS10890	COG1737	Transcriptional regulator
CKQ55_RS10895	COG1879	ABC-type sugar transport system periplasmic component
CKQ55_RS10900	COG1129	ABC transporter
CKQ55_RS10905	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS10910	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CKQ55_RS10915	COG1940	carbohydrate kinase activity
CKQ55_RS10925	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CKQ55_RS10930	COG1301	dicarboxylic acid transport
CKQ55_RS10940	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CKQ55_RS10945	COG3162	membrane
CKQ55_RS10985	COG1346	cytolysis
CKQ55_RS10990	COG1380	Effector of murein hydrolase LrgA
CKQ55_RS10995	COG0583	DNA-binding transcription factor activity
CKQ55_RS11000	COG0025	NhaP-type Na H and K H
CKQ55_RS11005	COG2252	PERMEase
CKQ55_RS11030	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CKQ55_RS11045	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CKQ55_RS11055	COG4771	TonB-dependent receptor
CKQ55_RS11060	COG0741	lytic transglycosylase activity
CKQ55_RS11065	COG0629	single-stranded DNA binding
CKQ55_RS11075	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CKQ55_RS11090	COG2315	Protein conserved in bacteria
CKQ55_RS11095	COG0432	Pfam Uncharacterised protein family UPF0047
CKQ55_RS11105	COG1448	Aminotransferase
CKQ55_RS11110	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CKQ55_RS11115	COG0305	Participates in initiation and elongation during chromosome replication
CKQ55_RS11130	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CKQ55_RS11140	COG0735	belongs to the Fur family
CKQ55_RS11150	COG0534	Mate efflux family protein
CKQ55_RS11160	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CKQ55_RS11240	COG0251	oxidation-reduction process
CKQ55_RS11250	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CKQ55_RS11265	COG0527	aspartate kinase activity
CKQ55_RS11270	COG3541	Predicted nucleotidyltransferase
CKQ55_RS11285	COG4650	regulator
CKQ55_RS11300	COG1187	pseudouridine synthase activity
CKQ55_RS11340	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CKQ55_RS11390	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CKQ55_RS11440	COG0151	Belongs to the GarS family
CKQ55_RS11450	COG4191	Histidine kinase
CKQ55_RS11490	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
CKQ55_RS11505	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CKQ55_RS11510	COG2104	thiamine diphosphate biosynthetic process
CKQ55_RS11520	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CKQ55_RS11525	COG3706	GGDEF domain
CKQ55_RS11535	COG1447	Phosphotransferase system cellobiose-specific component IIA
CKQ55_RS11540	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CKQ55_RS11580	COG0250	Participates in transcription elongation, termination and antitermination
CKQ55_RS11585	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CKQ55_RS11625	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CKQ55_RS11625	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CKQ55_RS11630	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CKQ55_RS11660	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
CKQ55_RS11670	COG1739	Uncharacterized protein family UPF0029
CKQ55_RS11725	COG0805	protein transport
CKQ55_RS11735	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CKQ55_RS11745	COG3165	ubiquinone biosynthetic process from chorismate
CKQ55_RS11765	COG0412	Dienelactone hydrolase
CKQ55_RS11780	COG0583	DNA-binding transcription factor activity
CKQ55_RS11785	COG0697	spore germination
CKQ55_RS11790	COG0561	phosphatase activity
CKQ55_RS11795	COG2267	carboxylic ester hydrolase activity
CKQ55_RS11800	COG1280	lysine exporter protein (LysE YggA)
CKQ55_RS11810	COG1280	lysine exporter protein (LysE YggA)
CKQ55_RS11825	COG2050	protein possibly involved in aromatic compounds catabolism
CKQ55_RS11835	COG0598	Magnesium transport protein CorA
CKQ55_RS11840	COG0210	DNA helicase
CKQ55_RS11845	COG1011	Hydrolase
CKQ55_RS11865	COG5567	small periplasmic lipoprotein
CKQ55_RS11880	COG0477	Major facilitator Superfamily
CKQ55_RS11895	COG3072	Adenylate cyclase
CKQ55_RS11905	COG1587	Uroporphyrinogen-III synthase
CKQ55_RS11910	COG2959	enzyme of heme biosynthesis
CKQ55_RS11915	COG3071	HemY protein
CKQ55_RS11960	COG2244	polysaccharide biosynthetic process
CKQ55_RS11965	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CKQ55_RS11970	COG0456	acetyltransferase
CKQ55_RS11975	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CKQ55_RS11980	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CKQ55_RS11990	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CKQ55_RS11995	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CKQ55_RS12000	COG3118	belongs to the thioredoxin family
CKQ55_RS12020	COG1397	ADP-ribosylglycohydrolase
CKQ55_RS12055	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CKQ55_RS12060	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CKQ55_RS12070	COG0583	DNA-binding transcription factor activity
CKQ55_RS12075	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CKQ55_RS12085	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CKQ55_RS12090	COG3978	acetolactate synthase activity
CKQ55_RS12110	COG3085	chromosome segregation
CKQ55_RS12185	COG0583	DNA-binding transcription factor activity
CKQ55_RS12205	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CKQ55_RS12220	COG3443	Belongs to the bacterial solute-binding protein 9 family
CKQ55_RS12225	COG2207	Transcriptional regulator
CKQ55_RS12235	COG0371	Dehydrogenase
CKQ55_RS12240	COG1349	DNA-binding transcription factor activity
CKQ55_RS12250	COG0583	DNA-binding transcription factor activity
CKQ55_RS12255	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CKQ55_RS12260	COG0460	homoserine dehydrogenase
CKQ55_RS12260	COG0527	aspartate kinase activity
CKQ55_RS12265	COG0626	cystathionine gamma-synthase activity
CKQ55_RS12280	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CKQ55_RS12285	COG1609	Transcriptional regulator
CKQ55_RS12290	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CKQ55_RS12305	COG1575	Belongs to the MenA family. Type 1 subfamily
CKQ55_RS12325	COG3678	ATP-independent chaperone mediated protein folding
CKQ55_RS12330	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS12335	COG2205	protein histidine kinase activity
CKQ55_RS12340	COG2258	MOSC domain
CKQ55_RS12390	COG1129	ABC transporter
CKQ55_RS12395	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS12405	COG1454	alcohol dehydrogenase
CKQ55_RS12425	COG1621	beta-fructofuranosidase activity
CKQ55_RS12430	COG2211	Major facilitator Superfamily
CKQ55_RS12435	COG1609	Transcriptional regulator
CKQ55_RS12450	COG0668	transmembrane transport
CKQ55_RS12465	COG3121	Chaperone
CKQ55_RS12475	COG3539	Fimbrial protein
CKQ55_RS12485	COG3188	usher protein
CKQ55_RS12490	COG3121	Chaperone
CKQ55_RS12500	COG3539	Fimbrial protein
CKQ55_RS12515	COG0110	maltose O-acetyltransferase activity
CKQ55_RS12520	COG2211	Major facilitator Superfamily
CKQ55_RS12565	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CKQ55_RS12605	COG0205	6-phosphofructokinase activity
CKQ55_RS12620	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
CKQ55_RS12630	COG3715	PTS system
CKQ55_RS12635	COG3716	PTS system mannose fructose sorbose family IID component
CKQ55_RS12660	COG0243	molybdopterin cofactor binding
CKQ55_RS12660	COG3383	formate dehydrogenase (NAD+) activity
CKQ55_RS12665	COG0243	molybdopterin cofactor binding
CKQ55_RS12665	COG3383	formate dehydrogenase (NAD+) activity
CKQ55_RS12670	COG0437	4 iron, 4 sulfur cluster binding
CKQ55_RS12675	COG2864	formate dehydrogenase
CKQ55_RS12685	COG0657	acetylesterase activity
CKQ55_RS12690	COG0456	acetyltransferase
CKQ55_RS12695	COG1490	D-aminoacyl-tRNA deacylase activity
CKQ55_RS12705	COG1011	Hydrolase
CKQ55_RS12730	COG3852	Histidine kinase
CKQ55_RS12745	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CKQ55_RS12775	COG0204	Acyl-transferase
CKQ55_RS12785	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CKQ55_RS12790	COG3084	Protein conserved in bacteria
CKQ55_RS12800	COG1763	Mo-molybdopterin cofactor biosynthetic process
CKQ55_RS12820	COG2186	Transcriptional regulator
CKQ55_RS12825	COG0477	Major facilitator Superfamily
CKQ55_RS12830	COG1609	Transcriptional regulator
CKQ55_RS12835	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS12845	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS12850	COG1129	ABC transporter
CKQ55_RS12880	COG1522	sequence-specific DNA binding
CKQ55_RS12885	COG0716	FMN binding
CKQ55_RS12900	COG3312	ion transport
CKQ55_RS12955	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CKQ55_RS12960	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CKQ55_RS12965	COG0573	inorganic phosphate transmembrane transporter activity
CKQ55_RS12970	COG0581	inorganic phosphate transmembrane transporter activity
CKQ55_RS12975	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CKQ55_RS12980	COG0704	Plays a role in the regulation of phosphate uptake
CKQ55_RS12990	COG2382	esterase
CKQ55_RS12995	COG0363	glucosamine-6-phosphate deaminase activity
CKQ55_RS13000	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CKQ55_RS13010	COG2252	PERMEase
CKQ55_RS13015	COG0431	NADPH-dependent FMN reductase
CKQ55_RS13020	COG2091	lysine biosynthetic process via aminoadipic acid
CKQ55_RS13035	COG0456	acetyltransferase
CKQ55_RS13050	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CKQ55_RS13060	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CKQ55_RS13075	COG0592	DNA-directed DNA polymerase activity
CKQ55_RS13085	COG0187	DNA topoisomerase II activity
CKQ55_RS13090	COG0583	DNA-binding transcription factor activity
CKQ55_RS13100	COG0561	phosphatase activity
CKQ55_RS13105	COG2186	Transcriptional regulator
CKQ55_RS13110	COG3734	2-keto-3-deoxy-galactonokinase
CKQ55_RS13115	COG0800	Aldolase
CKQ55_RS13125	COG2271	Major facilitator Superfamily
CKQ55_RS13130	COG0823	Involved in the tonB-independent uptake of proteins
CKQ55_RS13135	COG5645	(Lipo)protein
CKQ55_RS13155	COG2188	Transcriptional regulator
CKQ55_RS13170	COG2149	membrane
CKQ55_RS13180	COG0641	radical SAM
CKQ55_RS13190	COG2610	gluconate transmembrane transporter activity
CKQ55_RS13195	COG0583	DNA-binding transcription factor activity
CKQ55_RS13200	COG2814	Major facilitator Superfamily
CKQ55_RS13225	COG0028	Belongs to the TPP enzyme family
CKQ55_RS13230	COG0440	acetolactate synthase activity
CKQ55_RS13235	COG2197	response regulator
CKQ55_RS13285	COG2188	Transcriptional regulator
CKQ55_RS13310	COG4580	involved in the transport of maltose and maltodextrins
CKQ55_RS13315	COG1447	Phosphotransferase system cellobiose-specific component IIA
CKQ55_RS13320	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS13320	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS13330	COG1609	Transcriptional regulator
CKQ55_RS13340	COG5464	transposase or invertase
CKQ55_RS13350	COG0697	spore germination
CKQ55_RS13365	COG1263	PTS System
CKQ55_RS13365	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS13375	COG2814	Major facilitator Superfamily
CKQ55_RS13390	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS13400	COG1309	transcriptional regulator
CKQ55_RS13410	COG0583	DNA-binding transcription factor activity
CKQ55_RS13425	COG1464	Belongs to the NlpA lipoprotein family
CKQ55_RS13440	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CKQ55_RS13450	COG1064	alcohol dehydrogenase
CKQ55_RS13470	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CKQ55_RS13500	COG2211	Major facilitator Superfamily
CKQ55_RS13505	COG1501	Belongs to the glycosyl hydrolase 31 family
CKQ55_RS13510	COG3711	transcriptional antiterminator
CKQ55_RS13515	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS13515	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS13515	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS13520	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS13525	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS13525	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS13535	COG0191	fructose-bisphosphate aldolase activity
CKQ55_RS13540	COG1940	carbohydrate kinase activity
CKQ55_RS13555	COG1486	melibiose metabolic process
CKQ55_RS13560	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS13560	COG1263	PTS System
CKQ55_RS13565	COG2982	Protein involved in outer membrane biogenesis
CKQ55_RS13570	COG2233	PERMEase
CKQ55_RS13575	COG0786	glutamate:sodium symporter activity
CKQ55_RS13590	COG3074	FtsZ-dependent cytokinesis
CKQ55_RS13620	COG3152	Membrane
CKQ55_RS13630	COG1494	fructose-1,6-bisphosphatase
CKQ55_RS13635	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CKQ55_RS13640	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CKQ55_RS13645	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CKQ55_RS13665	COG2860	membrane
CKQ55_RS13675	COG1561	YicC-like family, N-terminal region
CKQ55_RS13685	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CKQ55_RS13700	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CKQ55_RS13710	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CKQ55_RS13715	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CKQ55_RS13735	COG1519	Transferase
CKQ55_RS13740	COG1216	Glycosyl transferase, family 2
CKQ55_RS13745	COG0438	transferase activity, transferring glycosyl groups
CKQ55_RS13755	COG0859	PFAM glycosyl transferase family 9
CKQ55_RS13780	COG0859	PFAM glycosyl transferase family 9
CKQ55_RS13785	COG0859	PFAM glycosyl transferase family 9
CKQ55_RS13795	COG0156	8-amino-7-oxononanoate synthase activity
CKQ55_RS13805	COG0463	Glycosyl transferase, family 2
CKQ55_RS13810	COG2861	carbohydrate metabolic process
CKQ55_RS13815	COG4942	peptidase
CKQ55_RS13825	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CKQ55_RS13830	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CKQ55_RS13850	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CKQ55_RS13860	COG2186	Transcriptional regulator
CKQ55_RS13880	COG3722	fumarate hydratase activity
CKQ55_RS13900	COG1566	PFAM secretion protein HlyD family protein
CKQ55_RS13905	COG0625	glutathione transferase activity
CKQ55_RS13915	COG3276	selenocysteine insertion sequence binding
CKQ55_RS13925	COG2211	Major facilitator Superfamily
CKQ55_RS13930	COG4977	sequence-specific DNA binding
CKQ55_RS13930	COG1917	Cupin 2, conserved barrel domain protein
CKQ55_RS13935	COG0235	Class ii aldolase
CKQ55_RS13940	COG3623	hexulose-6-phosphate isomerase
CKQ55_RS13945	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
CKQ55_RS13950	COG1070	Carbohydrate kinase
CKQ55_RS13965	COG2731	YhcH YjgK YiaL family protein
CKQ55_RS13975	COG1414	Transcriptional regulator
CKQ55_RS13980	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CKQ55_RS13985	COG3977	Valine--pyruvate aminotransferase
CKQ55_RS13990	COG0366	Alpha amylase catalytic
CKQ55_RS14000	COG2992	FlgJ-related protein
CKQ55_RS14005	COG2207	Transcriptional regulator
CKQ55_RS14005	COG1609	Transcriptional regulator
CKQ55_RS14010	COG4214	carbohydrate transport
CKQ55_RS14020	COG4213	ABC transporter substrate-binding protein
CKQ55_RS14025	COG2115	Belongs to the xylose isomerase family
CKQ55_RS14030	COG1070	Carbohydrate kinase
CKQ55_RS14035	COG4682	membrane
CKQ55_RS14040	COG3274	enterobacterial common antigen metabolic process
CKQ55_RS14070	COG1278	Cold shock
CKQ55_RS14075	COG2944	sequence-specific DNA binding
CKQ55_RS14080	COG2814	Major facilitator Superfamily
CKQ55_RS14100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS14110	COG1609	Transcriptional regulator
CKQ55_RS14115	COG2885	chlorophyll binding
CKQ55_RS14120	COG0243	molybdopterin cofactor binding
CKQ55_RS14125	COG0456	acetyltransferase
CKQ55_RS14130	COG2818	Glycosylase
CKQ55_RS14135	COG5571	outer membrane autotransporter
CKQ55_RS14145	COG2223	nitrite transmembrane transporter activity
CKQ55_RS14170	COG0747	negative chemotaxis
CKQ55_RS14175	COG0601	transmembrane transport
CKQ55_RS14180	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CKQ55_RS14185	COG0444	Belongs to the ABC transporter superfamily
CKQ55_RS14190	COG4608	Belongs to the ABC transporter superfamily
CKQ55_RS14200	COG0489	protein tyrosine kinase activity
CKQ55_RS14215	COG0457	Tetratricopeptide repeat
CKQ55_RS14245	COG2194	sulfuric ester hydrolase activity
CKQ55_RS14280	COG1215	transferase activity, transferring glycosyl groups
CKQ55_RS14285	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
CKQ55_RS14290	COG0457	Tetratricopeptide repeat
CKQ55_RS14290	COG3118	belongs to the thioredoxin family
CKQ55_RS14295	COG2200	EAL domain
CKQ55_RS14295	COG2199	diguanylate cyclase activity
CKQ55_RS14305	COG0612	Peptidase, M16
CKQ55_RS14320	COG2982	Protein involved in outer membrane biogenesis
CKQ55_RS14325	COG0477	Major facilitator Superfamily
CKQ55_RS14330	COG1295	ribonuclease BN
CKQ55_RS14335	COG0583	DNA-binding transcription factor activity
CKQ55_RS14340	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS14345	COG2197	response regulator
CKQ55_RS14365	COG1454	alcohol dehydrogenase
CKQ55_RS14370	COG0625	glutathione transferase activity
CKQ55_RS14375	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CKQ55_RS14380	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CKQ55_RS14385	COG0671	phosphoesterase, PA-phosphatase related
CKQ55_RS14400	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CKQ55_RS14405	COG2183	response to ionizing radiation
CKQ55_RS14410	COG1918	ferrous iron import across plasma membrane
CKQ55_RS14445	COG2610	gluconate transmembrane transporter activity
CKQ55_RS14465	COG0589	response to stress
CKQ55_RS14475	COG0306	phosphate transporter
CKQ55_RS14480	COG2081	HI0933 family
CKQ55_RS14485	COG2204	response regulator
CKQ55_RS14490	COG3964	amidohydrolase
CKQ55_RS14495	COG0471	metal ion transport
CKQ55_RS14500	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CKQ55_RS14505	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CKQ55_RS14515	COG2239	Acts as a magnesium transporter
CKQ55_RS14535	COG0444	Belongs to the ABC transporter superfamily
CKQ55_RS14540	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CKQ55_RS14545	COG0601	transmembrane transport
CKQ55_RS14550	COG0747	negative chemotaxis
CKQ55_RS14565	COG3479	Phenolic acid decarboxylase
CKQ55_RS14605	COG2091	lysine biosynthetic process via aminoadipic acid
CKQ55_RS14610	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CKQ55_RS14615	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS14625	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CKQ55_RS14650	COG1216	Glycosyl transferase, family 2
CKQ55_RS14670	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CKQ55_RS14700	COG0628	permease
CKQ55_RS14705	COG0477	Major facilitator Superfamily
CKQ55_RS14715	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CKQ55_RS14730	COG3714	YhhN family
CKQ55_RS14740	COG3776	membrane
CKQ55_RS14745	COG0742	ribosomal rna small subunit methyltransferase
CKQ55_RS14750	COG0552	protein localization to endoplasmic reticulum
CKQ55_RS14755	COG2884	Cell division ATP-binding protein ftsE
CKQ55_RS14760	COG2177	Part of the ABC transporter FtsEX involved in
CKQ55_RS14775	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CKQ55_RS14785	COG0683	leucine binding
CKQ55_RS14805	COG0683	leucine binding
CKQ55_RS14830	COG2721	sulfolactate sulfo-lyase activity
CKQ55_RS14835	COG2271	Major facilitator Superfamily
CKQ55_RS14840	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CKQ55_RS14845	COG1414	Transcriptional regulator
CKQ55_RS14870	COG0584	glycerophosphoryl diester phosphodiesterase
CKQ55_RS14880	COG0405	Gamma-glutamyltransferase
CKQ55_RS14885	COG1247	-acetyltransferase
CKQ55_RS14900	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS14905	COG1741	Belongs to the pirin family
CKQ55_RS14910	COG1609	Transcriptional regulator
CKQ55_RS14915	COG3265	gluconokinase activity
CKQ55_RS14920	COG2610	gluconate transmembrane transporter activity
CKQ55_RS14925	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CKQ55_RS14950	COG0058	SHG alpha-glucan phosphorylase activity
CKQ55_RS14955	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CKQ55_RS14970	COG1349	DNA-binding transcription factor activity
CKQ55_RS14985	COG0058	SHG alpha-glucan phosphorylase activity
CKQ55_RS14990	COG1640	4-alpha-glucanotransferase
CKQ55_RS15005	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CKQ55_RS15010	COG1011	Hydrolase
CKQ55_RS15020	COG0494	nUDIX hydrolase
CKQ55_RS15025	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CKQ55_RS15050	COG4796	Type ii and iii secretion system protein
CKQ55_RS15070	COG3266	domain, Protein
CKQ55_RS15075	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CKQ55_RS15080	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CKQ55_RS15105	COG2146	nitrite reductase [NAD(P)H] activity
CKQ55_RS15110	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CKQ55_RS15115	COG0402	S-adenosylhomocysteine deaminase activity
CKQ55_RS15120	COG0738	Major facilitator superfamily
CKQ55_RS15145	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CKQ55_RS15150	COG1289	transmembrane transporter activity
CKQ55_RS15170	COG1765	OsmC-like protein
CKQ55_RS15175	COG3954	Phosphoribulokinase
CKQ55_RS15185	COG0429	hydrolase of the alpha beta-hydrolase fold
CKQ55_RS15195	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CKQ55_RS15205	COG0488	(ABC) transporter
CKQ55_RS15225	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CKQ55_RS15230	COG1047	Peptidyl-prolyl cis-trans
CKQ55_RS15240	COG0545	Peptidyl-prolyl cis-trans isomerase
CKQ55_RS15245	COG2964	Protein conserved in bacteria
CKQ55_RS15310	COG0051	transcription antitermination factor activity, RNA binding
CKQ55_RS15320	COG0088	Forms part of the polypeptide exit tunnel
CKQ55_RS15335	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CKQ55_RS15350	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CKQ55_RS15400	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CKQ55_RS15415	COG0201	protein transport
CKQ55_RS15430	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CKQ55_RS15440	COG0202	RNA polymerase activity
CKQ55_RS15445	COG0203	ribosomal protein L17
CKQ55_RS15455	COG0789	Transcriptional regulator
CKQ55_RS15460	COG3036	rescue of stalled ribosome
CKQ55_RS15490	COG0758	DNA mediated transformation
CKQ55_RS15500	COG0551	DNA topoisomerase type I activity
CKQ55_RS15520	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CKQ55_RS15565	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CKQ55_RS15570	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS15575	COG1309	transcriptional regulator
CKQ55_RS15600	COG4145	pantothenate transmembrane transporter activity
CKQ55_RS15605	COG3924	membrane
CKQ55_RS15610	COG0439	Biotin carboxylase
CKQ55_RS15615	COG0511	ligase activity, forming carbon-carbon bonds
CKQ55_RS15640	COG0604	alcohol dehydrogenase
CKQ55_RS15645	COG2200	EAL domain
CKQ55_RS15645	COG2199	diguanylate cyclase activity
CKQ55_RS15650	COG1077	Cell shape determining protein MreB Mrl
CKQ55_RS15655	COG1792	Involved in formation and maintenance of cell shape
CKQ55_RS15660	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CKQ55_RS15675	COG3164	Protein of unknown function
CKQ55_RS15680	COG0312	modulator of DNA gyrase
CKQ55_RS15685	COG1349	DNA-binding transcription factor activity
CKQ55_RS15690	COG0583	DNA-binding transcription factor activity
CKQ55_RS15705	COG1289	transmembrane transporter activity
CKQ55_RS15710	COG2732	(Barnase) inhibitor
CKQ55_RS15735	COG2188	Transcriptional regulator
CKQ55_RS15745	COG0471	metal ion transport
CKQ55_RS15750	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CKQ55_RS15755	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CKQ55_RS15765	COG0511	ligase activity, forming carbon-carbon bonds
CKQ55_RS15765	COG5016	pyruvate
CKQ55_RS15780	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CKQ55_RS15785	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CKQ55_RS15790	COG3105	Protein conserved in bacteria
CKQ55_RS15795	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CKQ55_RS15815	COG0625	glutathione transferase activity
CKQ55_RS15820	COG2969	positive regulation of protein catabolic process
CKQ55_RS15850	COG2731	YhcH YjgK YiaL family protein
CKQ55_RS15855	COG0493	'glutamate synthase
CKQ55_RS15860	COG0069	glutamate synthase activity
CKQ55_RS15860	COG0070	glutamate synthase
CKQ55_RS15860	COG0067	glutamate synthase
CKQ55_RS15875	COG1242	4 iron, 4 sulfur cluster binding
CKQ55_RS15880	COG0784	Response regulator, receiver
CKQ55_RS15880	COG2198	Histidine kinase
CKQ55_RS15880	COG5002	protein histidine kinase activity
CKQ55_RS15885	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CKQ55_RS15890	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CKQ55_RS15895	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS15900	COG1660	Displays ATPase and GTPase activities
CKQ55_RS15905	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS15910	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CKQ55_RS15915	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CKQ55_RS15920	COG1137	ATPase activity
CKQ55_RS15925	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CKQ55_RS15930	COG3117	lipopolysaccharide transmembrane transporter activity
CKQ55_RS15935	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CKQ55_RS15945	COG0530	calcium, potassium:sodium antiporter activity
CKQ55_RS15950	COG1127	ABC transporter
CKQ55_RS15955	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CKQ55_RS15960	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CKQ55_RS15965	COG2854	intermembrane phospholipid transfer
CKQ55_RS15970	COG3113	response to antibiotic
CKQ55_RS15975	COG5007	Belongs to the BolA IbaG family
CKQ55_RS15985	COG3423	Transcriptional regulator
CKQ55_RS15990	COG0142	geranyltranstransferase activity
CKQ55_RS16005	COG0697	spore germination
CKQ55_RS16015	COG2027	D-alanyl-D-alanine carboxypeptidase
CKQ55_RS16025	COG1534	Rna-binding protein
CKQ55_RS16040	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CKQ55_RS16045	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CKQ55_RS16055	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CKQ55_RS16080	COG0195	Participates in both transcription termination and antitermination
CKQ55_RS16085	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CKQ55_RS16125	COG0513	Belongs to the DEAD box helicase family
CKQ55_RS16130	COG0814	amino acid
CKQ55_RS16135	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CKQ55_RS16140	COG0826	peptidase U32
CKQ55_RS16145	COG0826	peptidase U32
CKQ55_RS16150	COG3154	lipid carrier protein
CKQ55_RS16155	COG3153	acetyltransferase
CKQ55_RS16160	COG2827	Endonuclease containing a URI domain
CKQ55_RS16170	COG0693	protein deglycase activity
CKQ55_RS16175	COG0702	epimerase
CKQ55_RS16180	COG0701	Predicted permease
CKQ55_RS16185	COG2823	Periplasmic or secreted lipoprotein
CKQ55_RS16205	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CKQ55_RS16220	COG1063	alcohol dehydrogenase
CKQ55_RS16225	COG3775	system Galactitol-specific IIC component
CKQ55_RS16230	COG3414	Phosphotransferase system galactitol-specific IIB component
CKQ55_RS16235	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS16240	COG4573	that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of
CKQ55_RS16245	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS16245	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS16250	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS16250	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS16250	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS16265	COG1349	DNA-binding transcription factor activity
CKQ55_RS16270	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS16275	COG2721	sulfolactate sulfo-lyase activity
CKQ55_RS16285	COG2271	Major facilitator Superfamily
CKQ55_RS16295	COG2084	Dehydrogenase
CKQ55_RS16300	COG1929	Belongs to the glycerate kinase type-1 family
CKQ55_RS16315	COG1741	Belongs to the pirin family
CKQ55_RS16320	COG0583	DNA-binding transcription factor activity
CKQ55_RS16325	COG3152	Membrane
CKQ55_RS16330	COG0435	Glutathione S-transferase
CKQ55_RS16335	COG2259	Doxx family
CKQ55_RS16345	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
CKQ55_RS16350	COG4575	ribosome binding
CKQ55_RS16355	COG1422	Protein of unknown function (DUF1090)
CKQ55_RS16365	COG0586	Pfam SNARE associated Golgi protein
CKQ55_RS16370	COG2186	Transcriptional regulator
CKQ55_RS16375	COG2271	Major facilitator Superfamily
CKQ55_RS16385	COG2721	sulfolactate sulfo-lyase activity
CKQ55_RS16405	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS16410	COG1451	nucleotide metabolic process
CKQ55_RS16415	COG3507	Belongs to the glycosyl hydrolase 43 family
CKQ55_RS16425	COG2211	Major facilitator Superfamily
CKQ55_RS16435	COG1902	pentaerythritol trinitrate reductase activity
CKQ55_RS16435	COG0446	pyridine nucleotide-disulphide oxidoreductase
CKQ55_RS16500	COG3408	Glycogen debranching enzyme
CKQ55_RS16500	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
CKQ55_RS16510	COG0531	amino acid
CKQ55_RS16515	COG0531	amino acid
CKQ55_RS16520	COG2731	YhcH YjgK YiaL family protein
CKQ55_RS16525	COG3250	beta-galactosidase activity
CKQ55_RS16545	COG3250	beta-galactosidase activity
CKQ55_RS16550	COG1609	Transcriptional regulator
CKQ55_RS16555	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CKQ55_RS16570	COG1695	Transcriptional regulator
CKQ55_RS16575	COG2375	cellular response to nickel ion
CKQ55_RS16595	COG1461	Dihydroxyacetone kinase
CKQ55_RS16600	COG2376	Dihydroxyacetone kinase
CKQ55_RS16645	COG0358	DNA primase activity
CKQ55_RS16650	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CKQ55_RS16705	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CKQ55_RS16720	COG4991	sh3 domain protein
CKQ55_RS16725	COG3025	triphosphatase activity
CKQ55_RS16745	COG2960	long-chain fatty acid transporting porin activity
CKQ55_RS16760	COG3121	Chaperone
CKQ55_RS16765	COG3188	usher protein
CKQ55_RS16770	COG3539	Fimbrial protein
CKQ55_RS16780	COG3384	dioxygenase
CKQ55_RS16785	COG0754	glutathionylspermidine amidase activity
CKQ55_RS16800	COG0494	nUDIX hydrolase
CKQ55_RS16805	COG3151	Protein conserved in bacteria
CKQ55_RS16810	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CKQ55_RS16825	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CKQ55_RS16830	COG2249	NAD(P)H dehydrogenase (quinone) activity
CKQ55_RS16835	COG0642	Histidine kinase
CKQ55_RS16840	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS16845	COG3111	PFAM Bacterial OB fold (BOF) protein
CKQ55_RS16850	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CKQ55_RS16860	COG0204	Acyl-transferase
CKQ55_RS16865	COG2132	Multicopper oxidase
CKQ55_RS16870	COG1032	radical SAM domain protein
CKQ55_RS16885	COG1979	alcohol dehydrogenase
CKQ55_RS16895	COG2207	Transcriptional regulator
CKQ55_RS16900	COG0586	Pfam SNARE associated Golgi protein
CKQ55_RS16920	COG0848	biopolymer transport protein
CKQ55_RS16940	COG0625	glutathione transferase activity
CKQ55_RS16950	COG0754	glutathionylspermidine amidase activity
CKQ55_RS16955	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CKQ55_RS16965	COG2365	Tyrosine phosphatase family
CKQ55_RS16985	COG0626	cystathionine gamma-synthase activity
CKQ55_RS17000	COG0471	metal ion transport
CKQ55_RS17030	COG1192	Involved in chromosome partitioning
CKQ55_RS17055	COG1811	Na channel or pump
CKQ55_RS17060	COG1982	Orn Lys Arg decarboxylase major
CKQ55_RS17065	COG2211	Major facilitator Superfamily
CKQ55_RS17080	COG1194	a g-specific adenine glycosylase
CKQ55_RS17090	COG3171	Protein conserved in bacteria
CKQ55_RS17105	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
CKQ55_RS17110	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CKQ55_RS17115	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CKQ55_RS17130	COG0762	integral membrane protein
CKQ55_RS17135	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CKQ55_RS17140	COG2805	Type II/IV secretion system protein
CKQ55_RS17160	COG0189	ligase activity
CKQ55_RS17165	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CKQ55_RS17170	COG2356	endonuclease I
CKQ55_RS17180	COG2814	Major facilitator Superfamily
CKQ55_RS17200	COG1166	arginine decarboxylase activity
CKQ55_RS17210	COG0501	Belongs to the peptidase M48B family
CKQ55_RS17215	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CKQ55_RS17220	COG1122	ATPase activity
CKQ55_RS17255	COG0191	fructose-bisphosphate aldolase activity
CKQ55_RS17260	COG0668	transmembrane transport
CKQ55_RS17270	COG2968	Membrane
CKQ55_RS17275	COG0583	DNA-binding transcription factor activity
CKQ55_RS17280	COG0427	acetyl-CoA hydrolase
CKQ55_RS17285	COG1024	Enoyl-CoA hydratase
CKQ55_RS17290	COG1703	isobutyryl-CoA mutase activity
CKQ55_RS17295	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CKQ55_RS17295	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CKQ55_RS17315	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CKQ55_RS17320	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CKQ55_RS17340	COG0006	proline dipeptidase activity
CKQ55_RS17345	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CKQ55_RS17350	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CKQ55_RS17370	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS17375	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CKQ55_RS17380	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS17385	COG1737	Transcriptional regulator
CKQ55_RS17395	COG1272	protein, Hemolysin III
CKQ55_RS17410	COG3716	PTS system mannose fructose sorbose family IID component
CKQ55_RS17415	COG3715	PTS system
CKQ55_RS17420	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS17420	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS17440	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CKQ55_RS17450	COG0716	FMN binding
CKQ55_RS17465	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CKQ55_RS17485	COG1811	Na channel or pump
CKQ55_RS17495	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CKQ55_RS17500	COG0583	DNA-binding transcription factor activity
CKQ55_RS17505	COG4942	peptidase
CKQ55_RS17515	COG0582	viral genome integration into host DNA
CKQ55_RS17540	COG0702	epimerase
CKQ55_RS17550	COG0667	Aldo Keto reductase
CKQ55_RS17555	COG0656	L-ascorbic acid biosynthetic process
CKQ55_RS17595	COG5002	protein histidine kinase activity
CKQ55_RS17605	COG0667	Aldo Keto reductase
CKQ55_RS17615	COG0778	Nitroreductase
CKQ55_RS17620	COG2814	Major facilitator Superfamily
CKQ55_RS17635	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CKQ55_RS17640	COG1393	Belongs to the ArsC family
CKQ55_RS17655	COG2223	nitrite transmembrane transporter activity
CKQ55_RS17660	COG3835	regulator
CKQ55_RS17665	COG1929	Belongs to the glycerate kinase type-1 family
CKQ55_RS17710	COG0738	Major facilitator superfamily
CKQ55_RS17715	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS17720	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CKQ55_RS17725	COG1349	DNA-binding transcription factor activity
CKQ55_RS17740	COG1349	DNA-binding transcription factor activity
CKQ55_RS17765	COG2909	trisaccharide binding
CKQ55_RS17770	COG1538	Outer membrane efflux protein
CKQ55_RS17775	COG1289	transmembrane transporter activity
CKQ55_RS17790	COG3592	Divergent 4Fe-4S mono-cluster
CKQ55_RS17795	COG2388	GCN5-related N-acetyl-transferase
CKQ55_RS17805	COG1522	sequence-specific DNA binding
CKQ55_RS17810	COG1846	Transcriptional regulator
CKQ55_RS17815	COG0697	spore germination
CKQ55_RS17830	COG0640	Transcriptional regulator
CKQ55_RS17875	COG0667	Aldo Keto reductase
CKQ55_RS17880	COG0814	amino acid
CKQ55_RS17895	COG0183	Belongs to the thiolase family
CKQ55_RS17905	COG0823	Involved in the tonB-independent uptake of proteins
CKQ55_RS17910	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS17915	COG2814	Major facilitator Superfamily
CKQ55_RS17940	COG0823	Involved in the tonB-independent uptake of proteins
CKQ55_RS17950	COG3842	ATPase activity
CKQ55_RS17955	COG0395	ABC-type sugar transport system, permease component
CKQ55_RS17960	COG1175	transmembrane transport
CKQ55_RS17970	COG1794	racemase activity, acting on amino acids and derivatives
CKQ55_RS17990	COG3188	usher protein
CKQ55_RS17995	COG3121	Chaperone
CKQ55_RS18000	COG0583	DNA-binding transcription factor activity
CKQ55_RS18010	COG1609	Transcriptional regulator
CKQ55_RS18015	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS18020	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS18025	COG2186	Transcriptional regulator
CKQ55_RS18035	COG1609	Transcriptional regulator
CKQ55_RS18060	COG0667	Aldo Keto reductase
CKQ55_RS18070	COG0861	Integral membrane protein TerC family
CKQ55_RS18115	COG2165	general secretion pathway protein
CKQ55_RS18120	COG4795	General secretion pathway protein
CKQ55_RS18130	COG4967	type IV pilus modification protein PilV
CKQ55_RS18135	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CKQ55_RS18140	COG1025	Belongs to the peptidase M16 family
CKQ55_RS18145	COG1074	ATP-dependent DNA helicase activity
CKQ55_RS18150	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CKQ55_RS18155	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CKQ55_RS18155	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CKQ55_RS18160	COG0860	N-Acetylmuramoyl-L-alanine amidase
CKQ55_RS18165	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CKQ55_RS18195	COG4656	Part of a membrane complex involved in electron transport
CKQ55_RS18200	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS18200	COG1454	alcohol dehydrogenase
CKQ55_RS18215	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
CKQ55_RS18230	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CKQ55_RS18410	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CKQ55_RS18415	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CKQ55_RS18420	COG2166	iron-sulfur cluster assembly
CKQ55_RS18425	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CKQ55_RS18435	COG0583	DNA-binding transcription factor activity
CKQ55_RS18440	COG2363	Small membrane protein
CKQ55_RS18450	COG1349	DNA-binding transcription factor activity
CKQ55_RS18470	COG0738	Major facilitator superfamily
CKQ55_RS18475	COG0235	Class ii aldolase
CKQ55_RS18490	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CKQ55_RS18505	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CKQ55_RS18510	COG1760	l-serine dehydratase
CKQ55_RS18515	COG0814	amino acid
CKQ55_RS18520	COG1611	Belongs to the LOG family
CKQ55_RS18535	COG3098	single-species biofilm formation
CKQ55_RS18540	COG0564	pseudouridine synthase activity
CKQ55_RS18545	COG0716	FMN binding
CKQ55_RS18555	COG2271	Major facilitator Superfamily
CKQ55_RS18560	COG4948	Mandelate Racemase Muconate Lactonizing
CKQ55_RS18565	COG4948	Mandelate Racemase Muconate Lactonizing
CKQ55_RS18575	COG4999	Histidine kinase
CKQ55_RS18575	COG3850	Histidine kinase
CKQ55_RS18575	COG2205	protein histidine kinase activity
CKQ55_RS18575	COG3437	response regulator, receiver
CKQ55_RS18585	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CKQ55_RS18590	COG3956	TIGRFAM MazG family protein
CKQ55_RS18610	COG0602	queuosine metabolic process
CKQ55_RS18615	COG0720	synthase
CKQ55_RS18645	COG1203	CRISPR-associated helicase, Cas3
CKQ55_RS18675	COG1518	maintenance of DNA repeat elements
CKQ55_RS18680	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CKQ55_RS18685	COG2234	aminopeptidase activity
CKQ55_RS18745	COG4942	peptidase
CKQ55_RS18745	COG1388	LysM domain
CKQ55_RS18750	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CKQ55_RS18760	COG0477	Major facilitator Superfamily
CKQ55_RS18780	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CKQ55_RS18800	COG3539	Fimbrial protein
CKQ55_RS18810	COG3188	usher protein
CKQ55_RS18815	COG3121	Chaperone
CKQ55_RS18825	COG3539	Fimbrial protein
CKQ55_RS18855	COG1132	(ABC) transporter
CKQ55_RS18860	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS18870	COG1538	Outer membrane efflux protein
CKQ55_RS18875	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CKQ55_RS18920	COG1454	alcohol dehydrogenase
CKQ55_RS18930	COG1063	alcohol dehydrogenase
CKQ55_RS18935	COG2271	Major facilitator Superfamily
CKQ55_RS18940	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS18950	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
CKQ55_RS18955	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS18960	COG4558	Periplasmic binding protein
CKQ55_RS18965	COG3720	iron ion transport
CKQ55_RS18985	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CKQ55_RS18990	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CKQ55_RS18995	COG1121	(ABC) transporter
CKQ55_RS19005	COG1609	Transcriptional regulator
CKQ55_RS19010	COG1940	carbohydrate kinase activity
CKQ55_RS19015	COG1447	Phosphotransferase system cellobiose-specific component IIA
CKQ55_RS19020	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS19025	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS19030	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS19045	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS19050	COG0657	acetylesterase activity
CKQ55_RS19050	COG2755	lipolytic protein G-D-S-L family
CKQ55_RS19060	COG0309	Hydrogenase expression formation protein (HypE)
CKQ55_RS19065	COG0409	Hydrogenase expression formation protein
CKQ55_RS19070	COG0298	carbon dioxide binding
CKQ55_RS19075	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CKQ55_RS19090	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CKQ55_RS19095	COG0651	ATP synthesis coupled electron transport
CKQ55_RS19100	COG0650	Formate hydrogenlyase subunit 4
CKQ55_RS19105	COG3261	NADH dehydrogenase
CKQ55_RS19105	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CKQ55_RS19110	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CKQ55_RS19115	COG3260	NADH ubiquinone oxidoreductase 20
CKQ55_RS19125	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CKQ55_RS19130	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS19135	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS19135	COG1263	PTS System
CKQ55_RS19140	COG1609	Transcriptional regulator
CKQ55_RS19145	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CKQ55_RS19150	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CKQ55_RS19155	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CKQ55_RS19185	COG1349	DNA-binding transcription factor activity
CKQ55_RS19190	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS19195	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS19205	COG3732	PTS system glucitol sorbitol-specific
CKQ55_RS19210	COG3730	PTS system glucitol sorbitol-specific
CKQ55_RS19215	COG2951	lytic endotransglycosylase activity
CKQ55_RS19230	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CKQ55_RS19235	COG0803	Belongs to the bacterial solute-binding protein 9 family
CKQ55_RS19245	COG1546	Belongs to the CinA family
CKQ55_RS19265	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CKQ55_RS19295	COG2823	Periplasmic or secreted lipoprotein
CKQ55_RS19300	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CKQ55_RS19305	COG1238	metal cluster binding
CKQ55_RS19325	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CKQ55_RS19330	COG2814	Major facilitator Superfamily
CKQ55_RS19335	COG1566	PFAM secretion protein HlyD family protein
CKQ55_RS19340	COG1846	Transcriptional regulator
CKQ55_RS19350	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CKQ55_RS19360	COG4176	ABC-type proline glycine betaine transport system permease component
CKQ55_RS19375	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CKQ55_RS19385	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CKQ55_RS19390	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CKQ55_RS19400	COG4575	ribosome binding
CKQ55_RS19430	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CKQ55_RS19435	COG0640	Transcriptional regulator
CKQ55_RS19440	COG3284	Transcriptional regulator
CKQ55_RS19465	COG3188	usher protein
CKQ55_RS19490	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS19495	COG2814	Major facilitator Superfamily
CKQ55_RS19500	COG1858	cytochrome C peroxidase
CKQ55_RS19510	COG1858	cytochrome C peroxidase
CKQ55_RS19525	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CKQ55_RS19530	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CKQ55_RS19540	COG1138	Cytochrome C-type biogenesis protein
CKQ55_RS19545	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CKQ55_RS19550	COG4235	cytochrome complex assembly
CKQ55_RS19550	COG3088	subunit of a heme lyase
CKQ55_RS19560	COG0235	Class ii aldolase
CKQ55_RS19565	COG1126	abc transporter atp-binding protein
CKQ55_RS19570	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS19620	COG1403	HNH endonuclease
CKQ55_RS19675	COG0582	viral genome integration into host DNA
CKQ55_RS19690	COG2867	negative regulation of translational initiation
CKQ55_RS19705	COG0497	DNA recombination
CKQ55_RS19720	COG4536	flavin adenine dinucleotide binding
CKQ55_RS19725	COG4137	Cytochrome C assembly protein
CKQ55_RS19730	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CKQ55_RS19765	COG2885	chlorophyll binding
CKQ55_RS19770	COG2199	diguanylate cyclase activity
CKQ55_RS19780	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CKQ55_RS19785	COG0287	Prephenate dehydrogenase
CKQ55_RS19785	COG1605	Chorismate mutase
CKQ55_RS19795	COG1605	Chorismate mutase
CKQ55_RS19795	COG0077	Prephenate dehydratase
CKQ55_RS19800	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CKQ55_RS19805	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CKQ55_RS19820	COG0542	response to heat
CKQ55_RS19855	COG0477	Major facilitator Superfamily
CKQ55_RS19860	COG5544	Lipoprotein
CKQ55_RS19865	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CKQ55_RS19875	COG3148	PFAM DTW domain containing protein
CKQ55_RS19880	COG3118	belongs to the thioredoxin family
CKQ55_RS19885	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CKQ55_RS19905	COG0513	Belongs to the DEAD box helicase family
CKQ55_RS19915	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CKQ55_RS19925	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
CKQ55_RS19930	COG3026	antisigma factor binding
CKQ55_RS19935	COG3086	response to oxidative stress
CKQ55_RS19945	COG0681	Belongs to the peptidase S26 family
CKQ55_RS19975	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CKQ55_RS19985	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CKQ55_RS19990	COG1737	Transcriptional regulator
CKQ55_RS19995	COG0560	Phosphoserine phosphatase
CKQ55_RS20015	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CKQ55_RS20015	COG0047	phosphoribosylformylglycinamidine synthase activity
CKQ55_RS20020	COG2205	protein histidine kinase activity
CKQ55_RS20025	COG3170	Tfp pilus assembly protein FimV
CKQ55_RS20030	COG2204	response regulator
CKQ55_RS20035	COG0347	Belongs to the P(II) protein family
CKQ55_RS20040	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CKQ55_RS20040	COG1017	nitric oxide dioxygenase activity
CKQ55_RS20060	COG2259	Doxx family
CKQ55_RS20065	COG1940	carbohydrate kinase activity
CKQ55_RS20070	COG0457	Tetratricopeptide repeat
CKQ55_RS20075	COG0477	Major facilitator Superfamily
CKQ55_RS20075	COG2814	Major facilitator Superfamily
CKQ55_RS20080	COG2017	converts alpha-aldose to the beta-anomer
CKQ55_RS20085	COG2814	Major facilitator Superfamily
CKQ55_RS20090	COG3711	transcriptional antiterminator
CKQ55_RS20095	COG3683	transport system, periplasmic component
CKQ55_RS20100	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CKQ55_RS20125	COG0822	iron-sulfur transferase activity
CKQ55_RS20145	COG0633	Ferredoxin
CKQ55_RS20150	COG2975	iron-sulfur cluster assembly
CKQ55_RS20165	COG2897	thiosulfate sulfurtransferase activity
CKQ55_RS20170	COG1473	amidohydrolase
CKQ55_RS20180	COG2373	Large extracellular alpha-helical protein
CKQ55_RS20185	COG4953	penicillin-binding protein 1C
CKQ55_RS20215	COG2976	Protein conserved in bacteria
CKQ55_RS20240	COG1645	bacterial-type flagellum-dependent swarming motility
CKQ55_RS20255	COG1570	exodeoxyribonuclease VII activity
CKQ55_RS20260	COG0517	IMP dehydrogenase activity
CKQ55_RS20260	COG0516	GMP reductase activity
CKQ55_RS20265	COG0519	Catalyzes the synthesis of GMP from XMP
CKQ55_RS20265	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CKQ55_RS20275	COG0583	DNA-binding transcription factor activity
CKQ55_RS20285	COG2200	EAL domain
CKQ55_RS20290	COG0248	Ppx GppA phosphatase
CKQ55_RS20310	COG2211	Major facilitator Superfamily
CKQ55_RS20320	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CKQ55_RS20340	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS20345	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CKQ55_RS20350	COG2233	PERMEase
CKQ55_RS20360	COG1393	Belongs to the ArsC family
CKQ55_RS20365	COG4783	chaperone-mediated protein folding
CKQ55_RS20370	COG0628	permease
CKQ55_RS20375	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CKQ55_RS20380	COG2716	regulation of RNA biosynthetic process
CKQ55_RS20390	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CKQ55_RS20400	COG2321	neutral zinc metallopeptidase
CKQ55_RS20410	COG0400	carboxylic ester hydrolase activity
CKQ55_RS20425	COG1393	Belongs to the ArsC family
CKQ55_RS20430	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CKQ55_RS20435	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CKQ55_RS20435	COG0493	'glutamate synthase
CKQ55_RS20445	COG5342	invasion associated locus B
CKQ55_RS20450	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CKQ55_RS20460	COG4810	utilization protein
CKQ55_RS20470	COG4766	ethanolamine catabolic process
CKQ55_RS20540	COG2207	Transcriptional regulator
CKQ55_RS20550	COG0860	N-Acetylmuramoyl-L-alanine amidase
CKQ55_RS20575	COG2837	iron assimilation
CKQ55_RS20580	COG4150	thiosulfate binding
CKQ55_RS20585	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CKQ55_RS20590	COG4208	sulfate ABC transporter
CKQ55_RS20595	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CKQ55_RS20605	COG4319	ketosteroid isomerase
CKQ55_RS20645	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CKQ55_RS20665	COG3530	Putative quorum-sensing-regulated virulence factor
CKQ55_RS20670	COG0385	Bile acid
CKQ55_RS20675	COG0583	DNA-binding transcription factor activity
CKQ55_RS20680	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CKQ55_RS20685	COG2211	Major facilitator Superfamily
CKQ55_RS20690	COG0583	DNA-binding transcription factor activity
CKQ55_RS20720	COG3415	Transposase
CKQ55_RS20725	COG3415	Transposase
CKQ55_RS20740	COG2199	diguanylate cyclase activity
CKQ55_RS20740	COG2200	EAL domain
CKQ55_RS20745	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CKQ55_RS20760	COG0667	Aldo Keto reductase
CKQ55_RS20765	COG3961	Belongs to the TPP enzyme family
CKQ55_RS20780	COG3279	Response regulator of the LytR AlgR family
CKQ55_RS20785	COG3275	phosphorelay sensor kinase activity
CKQ55_RS20790	COG0436	Aminotransferase
CKQ55_RS20795	COG2807	transmembrane transport
CKQ55_RS20800	COG0583	DNA-binding transcription factor activity
CKQ55_RS20825	COG2116	formate transmembrane transporter activity
CKQ55_RS20840	COG3691	Protein conserved in bacteria
CKQ55_RS20855	COG2062	phosphohistidine phosphatase, SixA
CKQ55_RS20880	COG0730	response to heat
CKQ55_RS20885	COG3101	peptidyl-lysine hydroxylation
CKQ55_RS20900	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CKQ55_RS20920	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CKQ55_RS20930	COG0586	Pfam SNARE associated Golgi protein
CKQ55_RS20940	COG0285	dihydrofolate synthase activity
CKQ55_RS20945	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
CKQ55_RS20950	COG1286	toxin biosynthetic process
CKQ55_RS20955	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CKQ55_RS20960	COG0163	prenyltransferase activity
CKQ55_RS20980	COG4160	amino acid transport
CKQ55_RS20985	COG4598	ABC transporter
CKQ55_RS21005	COG1090	epimerase
CKQ55_RS21010	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CKQ55_RS21015	COG0625	glutathione transferase activity
CKQ55_RS21020	COG0625	glutathione transferase activity
CKQ55_RS21025	COG0622	Phosphoesterase
CKQ55_RS21035	COG1609	Transcriptional regulator
CKQ55_RS21040	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS21050	COG3037	sugar-specific permease SgaT UlaA
CKQ55_RS21055	COG3959	Transketolase, thiamine diphosphate binding domain
CKQ55_RS21060	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CKQ55_RS21085	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CKQ55_RS21090	COG0490	domain, Protein
CKQ55_RS21090	COG0471	metal ion transport
CKQ55_RS21100	COG0436	Aminotransferase
CKQ55_RS21105	COG0583	DNA-binding transcription factor activity
CKQ55_RS21155	COG0839	Belongs to the complex I subunit 6 family
CKQ55_RS21160	COG0713	ATP synthesis coupled electron transport
CKQ55_RS21165	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CKQ55_RS21170	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CKQ55_RS21180	COG0582	viral genome integration into host DNA
CKQ55_RS21190	COG3121	Chaperone
CKQ55_RS21210	COG0582	viral genome integration into host DNA
CKQ55_RS21220	COG2153	protein acetylation
CKQ55_RS21225	COG1169	isochorismate synthase
CKQ55_RS21255	COG3647	Membrane
CKQ55_RS21310	COG1414	Transcriptional regulator
CKQ55_RS21320	COG2271	Major facilitator Superfamily
CKQ55_RS21330	COG0247	lactate metabolic process
CKQ55_RS21340	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CKQ55_RS21345	COG2271	Major facilitator Superfamily
CKQ55_RS21350	COG0584	glycerophosphoryl diester phosphodiesterase
CKQ55_RS21355	COG0583	DNA-binding transcription factor activity
CKQ55_RS21360	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
CKQ55_RS21365	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CKQ55_RS21395	COG2205	protein histidine kinase activity
CKQ55_RS21395	COG0784	Response regulator, receiver
CKQ55_RS21405	COG0642	Histidine kinase
CKQ55_RS21405	COG2198	Histidine kinase
CKQ55_RS21425	COG2169	Transcriptional regulator
CKQ55_RS21425	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CKQ55_RS21430	COG3145	DNA-N1-methyladenine dioxygenase activity
CKQ55_RS21435	COG4615	Cyclic peptide transporter
CKQ55_RS21440	COG2239	Acts as a magnesium transporter
CKQ55_RS21445	COG0659	secondary active sulfate transmembrane transporter activity
CKQ55_RS21460	COG0628	permease
CKQ55_RS21520	COG3858	chitin binding
CKQ55_RS21520	COG1388	LysM domain
CKQ55_RS21600	COG1349	DNA-binding transcription factor activity
CKQ55_RS21605	COG0494	nUDIX hydrolase
CKQ55_RS21615	COG1061	Type III restriction enzyme res subunit
CKQ55_RS21620	COG1187	pseudouridine synthase activity
CKQ55_RS21625	COG2814	Major facilitator Superfamily
CKQ55_RS21635	COG4172	Belongs to the ABC transporter superfamily
CKQ55_RS21640	COG4239	(ABC) transporter, permease
CKQ55_RS21645	COG4174	ABC transporter (Permease)
CKQ55_RS21650	COG4166	transmembrane transport
CKQ55_RS21655	COG2200	EAL domain
CKQ55_RS21660	COG0791	NLP P60 protein
CKQ55_RS21665	COG0671	phosphoesterase, PA-phosphatase related
CKQ55_RS21670	COG0523	cobalamin synthesis protein
CKQ55_RS21675	COG0246	Mannitol dehydrogenase
CKQ55_RS21680	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CKQ55_RS21690	COG2814	Major facilitator Superfamily
CKQ55_RS21695	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS21695	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS21700	COG1105	Belongs to the carbohydrate kinase PfkB family
CKQ55_RS21705	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS21705	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CKQ55_RS21705	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CKQ55_RS21710	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS21715	COG2313	pseudouridylate synthase activity
CKQ55_RS21720	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CKQ55_RS21725	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS21725	COG1522	sequence-specific DNA binding
CKQ55_RS21735	COG2855	membrane
CKQ55_RS21740	COG0583	DNA-binding transcription factor activity
CKQ55_RS21750	COG0833	amino acid
CKQ55_RS21755	COG4771	TonB-dependent receptor
CKQ55_RS21770	COG2311	Membrane
CKQ55_RS21790	COG1129	ABC transporter
CKQ55_RS21800	COG2949	membrane
CKQ55_RS21810	COG1346	cytolysis
CKQ55_RS21820	COG0583	DNA-binding transcription factor activity
CKQ55_RS21825	COG2271	Major facilitator Superfamily
CKQ55_RS21840	COG0625	glutathione transferase activity
CKQ55_RS21845	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CKQ55_RS21850	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CKQ55_RS21860	COG3711	transcriptional antiterminator
CKQ55_RS21870	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS21875	COG2226	methyltransferase
CKQ55_RS21880	COG1538	Outer membrane efflux protein
CKQ55_RS21885	COG0586	Pfam SNARE associated Golgi protein
CKQ55_RS21895	COG1686	Belongs to the peptidase S11 family
CKQ55_RS21905	COG0277	FAD linked oxidase domain protein
CKQ55_RS21910	COG1472	Belongs to the glycosyl hydrolase 3 family
CKQ55_RS21915	COG1732	Glycine betaine
CKQ55_RS21920	COG1174	glycine betaine transport
CKQ55_RS21925	COG1125	glycine betaine transport
CKQ55_RS21930	COG1174	glycine betaine transport
CKQ55_RS21940	COG0789	Transcriptional regulator
CKQ55_RS21945	COG3275	phosphorelay sensor kinase activity
CKQ55_RS21955	COG4807	Protein conserved in bacteria
CKQ55_RS21960	COG4808	Protein conserved in bacteria
CKQ55_RS21980	COG5455	response to cobalt ion
CKQ55_RS21985	COG0583	DNA-binding transcription factor activity
CKQ55_RS21990	COG2252	PERMEase
CKQ55_RS22000	COG0583	DNA-binding transcription factor activity
CKQ55_RS22010	COG2015	COG2015, Alkyl sulfatase and related hydrolases
CKQ55_RS22095	COG0351	phosphomethylpyrimidine kinase
CKQ55_RS22100	COG2188	Transcriptional regulator
CKQ55_RS22105	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS22110	COG1397	ADP-ribosylglycohydrolase
CKQ55_RS22115	COG2211	Major facilitator Superfamily
CKQ55_RS22120	COG1830	Aldolase
CKQ55_RS22150	COG1070	Carbohydrate kinase
CKQ55_RS22160	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CKQ55_RS22165	COG4948	Mandelate Racemase Muconate Lactonizing
CKQ55_RS22170	COG0747	negative chemotaxis
CKQ55_RS22175	COG0601	transmembrane transport
CKQ55_RS22180	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CKQ55_RS22185	COG0444	Belongs to the ABC transporter superfamily
CKQ55_RS22190	COG4608	Belongs to the ABC transporter superfamily
CKQ55_RS22210	COG4974	Belongs to the 'phage' integrase family
CKQ55_RS22270	COG4695	Portal protein
CKQ55_RS22415	COG0826	peptidase U32
CKQ55_RS22420	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS22425	COG2205	protein histidine kinase activity
CKQ55_RS22455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS22470	COG1522	sequence-specific DNA binding
CKQ55_RS22480	COG2267	carboxylic ester hydrolase activity
CKQ55_RS22495	COG0601	transmembrane transport
CKQ55_RS22500	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CKQ55_RS22505	COG0444	Belongs to the ABC transporter superfamily
CKQ55_RS22510	COG4608	Belongs to the ABC transporter superfamily
CKQ55_RS22520	COG1301	dicarboxylic acid transport
CKQ55_RS22535	COG2205	protein histidine kinase activity
CKQ55_RS22540	COG0372	Belongs to the citrate synthase family
CKQ55_RS22545	COG0443	Heat shock 70 kDa protein
CKQ55_RS22550	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CKQ55_RS22565	COG2982	Protein involved in outer membrane biogenesis
CKQ55_RS22570	COG1253	flavin adenine dinucleotide binding
CKQ55_RS22625	COG0463	Glycosyl transferase, family 2
CKQ55_RS22630	COG0438	transferase activity, transferring glycosyl groups
CKQ55_RS22665	COG1088	dTDP-glucose 4,6-dehydratase activity
CKQ55_RS22675	COG1091	dTDP-4-dehydrorhamnose reductase activity
CKQ55_RS22725	COG1215	transferase activity, transferring glycosyl groups
CKQ55_RS22735	COG0107	imidazoleglycerol-phosphate synthase activity
CKQ55_RS22745	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CKQ55_RS22760	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CKQ55_RS22770	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CKQ55_RS22775	COG0583	DNA-binding transcription factor activity
CKQ55_RS22780	COG0531	amino acid
CKQ55_RS22795	COG3604	Transcriptional regulator
CKQ55_RS22800	COG2205	protein histidine kinase activity
CKQ55_RS22885	COG0640	Transcriptional regulator
CKQ55_RS22890	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CKQ55_RS22895	COG2925	Exonuclease
CKQ55_RS22920	COG1289	transmembrane transporter activity
CKQ55_RS22940	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CKQ55_RS22950	COG2814	Major facilitator Superfamily
CKQ55_RS22955	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS22960	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS22960	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS22965	COG1082	Xylose isomerase domain protein TIM barrel
CKQ55_RS22975	COG1942	4-Oxalocrotonate Tautomerase
CKQ55_RS22980	COG0583	DNA-binding transcription factor activity
CKQ55_RS22985	COG0095	Lipoate-protein ligase
CKQ55_RS22990	COG0477	Major facilitator Superfamily
CKQ55_RS23000	COG5001	Diguanylate cyclase
CKQ55_RS23000	COG3300	MHYT domain
CKQ55_RS23005	COG3615	Tellurite resistance protein tehB
CKQ55_RS23015	COG2188	Transcriptional regulator
CKQ55_RS23020	COG1263	PTS System
CKQ55_RS23020	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS23035	COG3539	Fimbrial protein
CKQ55_RS23040	COG3539	Fimbrial protein
CKQ55_RS23045	COG3539	Fimbrial protein
CKQ55_RS23050	COG3188	usher protein
CKQ55_RS23055	COG3121	Chaperone
CKQ55_RS23060	COG3539	Fimbrial protein
CKQ55_RS23100	COG1376	ErfK ybiS ycfS ynhG family protein
CKQ55_RS23115	COG0667	Aldo Keto reductase
CKQ55_RS23120	COG0583	DNA-binding transcription factor activity
CKQ55_RS23140	COG4373	Mu-like prophage FluMu protein gp28
CKQ55_RS23200	COG4948	Mandelate Racemase Muconate Lactonizing
CKQ55_RS23215	COG0667	Aldo Keto reductase
CKQ55_RS23225	COG0477	Major facilitator Superfamily
CKQ55_RS23255	COG0534	Mate efflux family protein
CKQ55_RS23265	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CKQ55_RS23295	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CKQ55_RS23305	COG0589	response to stress
CKQ55_RS23315	COG2819	hydrolase of the alpha beta superfamily
CKQ55_RS23335	COG0251	oxidation-reduction process
CKQ55_RS23365	COG0463	Glycosyl transferase, family 2
CKQ55_RS23375	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CKQ55_RS23385	COG1418	mRNA catabolic process
CKQ55_RS23390	COG0270	DNA (cytosine-5-)-methyltransferase activity
CKQ55_RS23395	COG3727	T/G mismatch-specific endonuclease activity
CKQ55_RS23400	COG0697	spore germination
CKQ55_RS23405	COG2354	Protein conserved in bacteria
CKQ55_RS23410	COG5475	Uncharacterized small protein (DUF2158)
CKQ55_RS23445	COG0366	Alpha amylase catalytic
CKQ55_RS23450	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS23460	COG0765	amino acid transport
CKQ55_RS23465	COG1126	abc transporter atp-binding protein
CKQ55_RS23470	COG2197	response regulator
CKQ55_RS23480	COG2197	response regulator
CKQ55_RS23510	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CKQ55_RS23515	COG3012	SEC-C Motif Domain Protein
CKQ55_RS23515	COG3318	Belongs to the UPF0149 family
CKQ55_RS23520	COG0814	amino acid
CKQ55_RS23530	COG1528	Iron-storage protein
CKQ55_RS23540	COG0477	Major facilitator Superfamily
CKQ55_RS23560	COG1528	Iron-storage protein
CKQ55_RS23570	COG1879	ABC-type sugar transport system periplasmic component
CKQ55_RS23580	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS23610	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
CKQ55_RS23620	COG3102	Protein conserved in bacteria
CKQ55_RS23645	COG3788	relative of glutathione S-transferase, MAPEG superfamily
CKQ55_RS23650	COG1801	Protein of unknown function DUF72
CKQ55_RS23655	COG1335	isochorismatase
CKQ55_RS23665	COG0494	nUDIX hydrolase
CKQ55_RS23670	COG0217	transcriptional regulatory protein
CKQ55_RS23690	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CKQ55_RS23700	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CKQ55_RS23705	COG0739	heme binding
CKQ55_RS23710	COG1560	Kdo2-lipid A biosynthetic process
CKQ55_RS23720	COG0281	malic enzyme
CKQ55_RS23725	COG0679	Auxin Efflux Carrier
CKQ55_RS23730	COG3493	citrate carrier protein
CKQ55_RS23740	COG1737	Transcriptional regulator
CKQ55_RS23745	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CKQ55_RS23750	COG0129	dihydroxy-acid dehydratase activity
CKQ55_RS23755	COG0800	Aldolase
CKQ55_RS23765	COG3141	response to X-ray
CKQ55_RS23770	COG2979	Protein of unknown function (DUF533)
CKQ55_RS23775	COG1770	oligopeptidase
CKQ55_RS23780	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CKQ55_RS23790	COG2372	response to copper ion
CKQ55_RS23795	COG1276	copper resistance
CKQ55_RS23830	COG2990	Protein conserved in bacteria
CKQ55_RS23855	COG3008	intermembrane lipid transfer
CKQ55_RS23860	COG2995	paraquat-inducible protein a
CKQ55_RS23865	COG1956	GAF domain-containing protein
CKQ55_RS23885	COG2814	Major facilitator Superfamily
CKQ55_RS23925	COG0768	penicillin binding
CKQ55_RS23930	COG2226	methyltransferase
CKQ55_RS23950	COG3716	PTS system mannose fructose sorbose family IID component
CKQ55_RS23955	COG3715	PTS system
CKQ55_RS23960	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS23960	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS23970	COG2200	EAL domain
CKQ55_RS23975	COG1760	l-serine dehydratase
CKQ55_RS24005	COG1653	transport
CKQ55_RS24010	COG1175	transmembrane transport
CKQ55_RS24015	COG0395	ABC-type sugar transport system, permease component
CKQ55_RS24020	COG3842	ATPase activity
CKQ55_RS24030	COG0251	oxidation-reduction process
CKQ55_RS24035	COG1199	ATP-dependent helicase activity
CKQ55_RS24040	COG1214	PFAM Peptidase M22, glycoprotease
CKQ55_RS24045	COG3065	identical protein binding
CKQ55_RS24060	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CKQ55_RS24070	COG2894	cell division
CKQ55_RS24085	COG0179	Fumarylacetoacetate (FAA) hydrolase
CKQ55_RS24115	COG2719	SpoVR family
CKQ55_RS24135	COG1619	proteins homologs of microcin C7 resistance protein MccF
CKQ55_RS24150	COG2211	Major facilitator Superfamily
CKQ55_RS24160	COG1472	Belongs to the glycosyl hydrolase 3 family
CKQ55_RS24170	COG2308	Evidence 4 Homologs of previously reported genes of
CKQ55_RS24195	COG2814	Major facilitator Superfamily
CKQ55_RS24210	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CKQ55_RS24220	COG1174	glycine betaine transport
CKQ55_RS24235	COG0564	pseudouridine synthase activity
CKQ55_RS24240	COG0583	DNA-binding transcription factor activity
CKQ55_RS24260	COG2351	hydroxyisourate hydrolase activity
CKQ55_RS24265	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS24265	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS24270	COG2814	Major facilitator Superfamily
CKQ55_RS24285	COG2068	MobA-Related Protein
CKQ55_RS24295	COG2233	PERMEase
CKQ55_RS24300	COG0493	'glutamate synthase
CKQ55_RS24300	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CKQ55_RS24305	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CKQ55_RS24310	COG0402	S-adenosylhomocysteine deaminase activity
CKQ55_RS24315	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CKQ55_RS24315	COG0493	'glutamate synthase
CKQ55_RS24325	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CKQ55_RS24325	COG3608	succinylglutamate desuccinylase aspartoacylase
CKQ55_RS24330	COG0549	Belongs to the carbamate kinase family
CKQ55_RS24340	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CKQ55_RS24345	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CKQ55_RS24350	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CKQ55_RS24360	COG3829	transcription factor binding
CKQ55_RS24370	COG0582	viral genome integration into host DNA
CKQ55_RS24375	COG0012	GTP binding
CKQ55_RS24395	COG0659	secondary active sulfate transmembrane transporter activity
CKQ55_RS24430	COG2890	protein-(glutamine-N5) methyltransferase activity
CKQ55_RS24450	COG0387	Pfam Sodium calcium exchanger
CKQ55_RS24455	COG4572	Cation transport regulator
CKQ55_RS24460	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
CKQ55_RS24470	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CKQ55_RS24475	COG3707	response regulator
CKQ55_RS24480	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CKQ55_RS24490	COG1116	anion transmembrane transporter activity
CKQ55_RS24495	COG2146	nitrite reductase [NAD(P)H] activity
CKQ55_RS24495	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CKQ55_RS24500	COG0243	molybdopterin cofactor binding
CKQ55_RS24505	COG4932	domain protein
CKQ55_RS24510	COG2197	response regulator
CKQ55_RS24515	COG3850	Histidine kinase
CKQ55_RS24520	COG2223	nitrite transmembrane transporter activity
CKQ55_RS24525	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CKQ55_RS24530	COG1140	nitrate reductase beta subunit
CKQ55_RS24535	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CKQ55_RS24540	COG2181	nitrate reductase activity
CKQ55_RS24575	COG0788	formyltetrahydrofolate deformylase activity
CKQ55_RS24585	COG1752	Esterase of the alpha-beta hydrolase superfamily
CKQ55_RS24590	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS24595	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CKQ55_RS24615	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS24615	COG1454	alcohol dehydrogenase
CKQ55_RS24620	COG2095	MarC family integral membrane protein
CKQ55_RS24635	COG0601	transmembrane transport
CKQ55_RS24640	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CKQ55_RS24645	COG0444	Belongs to the ABC transporter superfamily
CKQ55_RS24655	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CKQ55_RS24675	COG1902	pentaerythritol trinitrate reductase activity
CKQ55_RS24680	COG2350	Protein conserved in bacteria
CKQ55_RS24745	COG3001	Fructosamine kinase
CKQ55_RS24755	COG1105	Belongs to the carbohydrate kinase PfkB family
CKQ55_RS24760	COG3137	Salt-induced outer membrane protein
CKQ55_RS24790	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CKQ55_RS24800	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CKQ55_RS24800	COG0072	phenylalanine-tRNA ligase activity
CKQ55_RS24820	COG0386	Belongs to the glutathione peroxidase family
CKQ55_RS24830	COG0791	NLP P60 protein
CKQ55_RS24840	COG4256	Hemin uptake protein
CKQ55_RS24845	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CKQ55_RS24855	COG0574	Belongs to the PEP-utilizing enzyme family
CKQ55_RS24855	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CKQ55_RS24865	COG0628	permease
CKQ55_RS24870	COG0277	FAD linked oxidase domain protein
CKQ55_RS24870	COG0247	lactate metabolic process
CKQ55_RS24875	COG2050	protein possibly involved in aromatic compounds catabolism
CKQ55_RS24880	COG2261	transglycosylase associated protein
CKQ55_RS24885	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CKQ55_RS24900	COG3121	Chaperone
CKQ55_RS24915	COG3539	Fimbrial protein
CKQ55_RS24920	COG0316	Belongs to the HesB IscA family
CKQ55_RS24925	COG0719	Fe-S assembly protein
CKQ55_RS24930	COG0396	ATPase activity
CKQ55_RS24935	COG0719	Fe-S assembly protein
CKQ55_RS24950	COG1376	ErfK ybiS ycfS ynhG family protein
CKQ55_RS24975	COG3185	4-Hydroxyphenylpyruvate dioxygenase
CKQ55_RS24975	COG1082	Xylose isomerase domain protein TIM barrel
CKQ55_RS24980	COG2271	Major facilitator Superfamily
CKQ55_RS24985	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CKQ55_RS24995	COG1120	ATPase activity
CKQ55_RS25000	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS25005	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CKQ55_RS25010	COG1414	Transcriptional regulator
CKQ55_RS25045	COG2814	Major facilitator Superfamily
CKQ55_RS25075	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CKQ55_RS25080	COG1960	acyl-CoA dehydrogenase activity
CKQ55_RS25095	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CKQ55_RS25100	COG1116	anion transmembrane transporter activity
CKQ55_RS25105	COG4774	siderophore transport
CKQ55_RS25110	COG1120	ATPase activity
CKQ55_RS25115	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS25120	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS25140	COG0765	amino acid transport
CKQ55_RS25145	COG1126	abc transporter atp-binding protein
CKQ55_RS25155	COG1473	amidohydrolase
CKQ55_RS25160	COG3383	formate dehydrogenase (NAD+) activity
CKQ55_RS25165	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CKQ55_RS25320	COG1175	transmembrane transport
CKQ55_RS25325	COG3842	ATPase activity
CKQ55_RS25350	COG1278	Cold shock
CKQ55_RS25375	COG0582	viral genome integration into host DNA
CKQ55_RS25380	COG3539	Fimbrial protein
CKQ55_RS25395	COG3121	Chaperone
CKQ55_RS25405	COG0582	viral genome integration into host DNA
CKQ55_RS25410	COG4993	Dehydrogenase
CKQ55_RS25420	COG0444	Belongs to the ABC transporter superfamily
CKQ55_RS25435	COG4166	transmembrane transport
CKQ55_RS25445	COG0346	lactoylglutathione lyase activity
CKQ55_RS25450	COG1349	DNA-binding transcription factor activity
CKQ55_RS25465	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CKQ55_RS25470	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS25475	COG3111	PFAM Bacterial OB fold (BOF) protein
CKQ55_RS25480	COG4529	Protein conserved in bacteria
CKQ55_RS25495	COG2323	membrane
CKQ55_RS25500	COG1546	Belongs to the CinA family
CKQ55_RS25515	COG1294	oxidase, subunit
CKQ55_RS25520	COG1271	oxidase subunit
CKQ55_RS25525	COG3546	catalase activity
CKQ55_RS25530	COG3685	Protein conserved in bacteria
CKQ55_RS25535	COG3685	Protein conserved in bacteria
CKQ55_RS25540	COG3729	General stress protein
CKQ55_RS25565	COG0307	riboflavin synthase, alpha
CKQ55_RS25570	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CKQ55_RS25575	COG2814	Major facilitator Superfamily
CKQ55_RS25580	COG0583	DNA-binding transcription factor activity
CKQ55_RS25595	COG2814	Major facilitator Superfamily
CKQ55_RS25605	COG0791	NLP P60 protein
CKQ55_RS25610	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CKQ55_RS25620	COG0346	lactoylglutathione lyase activity
CKQ55_RS25625	COG1902	pentaerythritol trinitrate reductase activity
CKQ55_RS25630	COG1309	transcriptional regulator
CKQ55_RS25635	COG3313	Fe-S protein
CKQ55_RS25640	COG4989	oxidoreductase activity
CKQ55_RS25650	COG1289	transmembrane transporter activity
CKQ55_RS25655	COG1566	PFAM secretion protein HlyD family protein
CKQ55_RS25670	COG3706	GGDEF domain
CKQ55_RS25685	COG3895	Periplasmic Protein
CKQ55_RS25705	COG0625	glutathione transferase activity
CKQ55_RS25715	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CKQ55_RS25725	COG4659	FMN binding
CKQ55_RS25760	COG2723	6-phospho-beta-galactosidase activity
CKQ55_RS25770	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS25785	COG0425	Belongs to the sulfur carrier protein TusA family
CKQ55_RS25790	COG2391	methyltransferase activity
CKQ55_RS25800	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CKQ55_RS25805	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CKQ55_RS25805	COG1263	PTS System
CKQ55_RS25810	COG1609	Transcriptional regulator
CKQ55_RS25815	COG5339	Protein conserved in bacteria
CKQ55_RS25820	COG1482	cell wall glycoprotein biosynthetic process
CKQ55_RS25825	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CKQ55_RS25825	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CKQ55_RS25830	COG0114	fumarate hydratase activity
CKQ55_RS25840	COG2205	protein histidine kinase activity
CKQ55_RS25845	COG0582	viral genome integration into host DNA
CKQ55_RS25855	COG0386	Belongs to the glutathione peroxidase family
CKQ55_RS25865	COG0745	RESPONSE REGULATOR receiver
CKQ55_RS25885	COG3136	membrane protein required for alginate biosynthesis
CKQ55_RS25895	COG0531	amino acid
CKQ55_RS25910	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CKQ55_RS25915	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CKQ55_RS25925	COG0589	response to stress
CKQ55_RS25930	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CKQ55_RS25935	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CKQ55_RS25940	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CKQ55_RS25945	COG1473	amidohydrolase
CKQ55_RS25955	COG0583	DNA-binding transcription factor activity
CKQ55_RS25960	COG2840	Smr protein MutS2
CKQ55_RS25965	COG1414	Transcriptional regulator
CKQ55_RS25975	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CKQ55_RS25980	COG0183	Belongs to the thiolase family
CKQ55_RS25990	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CKQ55_RS25995	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CKQ55_RS26000	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CKQ55_RS26000	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CKQ55_RS26020	COG4565	transcriptional regulatory protein
CKQ55_RS26025	COG3290	protein histidine kinase activity
CKQ55_RS26035	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS26040	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
CKQ55_RS26055	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CKQ55_RS26065	COG0679	Auxin Efflux Carrier
CKQ55_RS26095	COG0628	permease
CKQ55_RS26120	COG3591	Belongs to the peptidase S1B family
CKQ55_RS26140	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CKQ55_RS26145	COG2814	Major facilitator Superfamily
CKQ55_RS26150	COG0583	DNA-binding transcription factor activity
CKQ55_RS26155	COG1940	carbohydrate kinase activity
CKQ55_RS26160	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CKQ55_RS26170	COG3381	protein complex oligomerization
CKQ55_RS26175	COG3302	dmso reductase anchor subunit
CKQ55_RS26180	COG0437	4 iron, 4 sulfur cluster binding
CKQ55_RS26200	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CKQ55_RS26215	COG4948	Mandelate Racemase Muconate Lactonizing
CKQ55_RS26220	COG1063	alcohol dehydrogenase
CKQ55_RS26225	COG0477	Major facilitator Superfamily
CKQ55_RS26230	COG0246	Mannitol dehydrogenase
CKQ55_RS26235	COG0589	response to stress
CKQ55_RS26240	COG1802	Transcriptional regulator
CKQ55_RS26245	COG4221	oxidoreductase activity
CKQ55_RS26250	COG0339	signal peptide processing
CKQ55_RS26280	COG3122	Protein conserved in bacteria
CKQ55_RS26305	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CKQ55_RS26310	COG2223	nitrite transmembrane transporter activity
CKQ55_RS26330	COG2200	EAL domain
CKQ55_RS26375	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CKQ55_RS26395	COG1129	ABC transporter
CKQ55_RS26420	COG2814	Major facilitator Superfamily
CKQ55_RS26425	COG0697	spore germination
CKQ55_RS26480	COG0861	Integral membrane protein TerC family
CKQ55_RS26485	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CKQ55_RS26490	COG1454	alcohol dehydrogenase
CKQ55_RS26495	COG3395	kinase activity
CKQ55_RS26500	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CKQ55_RS26505	COG1349	DNA-binding transcription factor activity
CKQ55_RS26510	COG0039	L-malate dehydrogenase activity
CKQ55_RS26520	COG0583	DNA-binding transcription factor activity
CKQ55_RS26525	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS26540	COG2199	diguanylate cyclase activity
CKQ55_RS26590	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS26595	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CKQ55_RS26635	COG0477	Major facilitator Superfamily
CKQ55_RS26650	COG2011	ABC-type metal ion transport system permease component
CKQ55_RS26670	COG4628	conserved protein (DUF2132)
CKQ55_RS26690	COG1126	abc transporter atp-binding protein
CKQ55_RS26695	COG0765	amino acid transport
CKQ55_RS26700	COG0765	amino acid transport
CKQ55_RS26720	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CKQ55_RS26725	COG2207	Transcriptional regulator
CKQ55_RS26735	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CKQ55_RS26740	COG1446	asparaginase
CKQ55_RS26745	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS26760	COG1120	ATPase activity
CKQ55_RS26765	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CKQ55_RS26770	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS26790	COG3775	system Galactitol-specific IIC component
CKQ55_RS26795	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CKQ55_RS26800	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS26805	COG1070	Carbohydrate kinase
CKQ55_RS26830	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS26835	COG1129	ABC transporter
CKQ55_RS26845	COG1609	Transcriptional regulator
CKQ55_RS26855	COG0693	protein deglycase activity
CKQ55_RS26870	COG0412	Dienelactone hydrolase
CKQ55_RS26875	COG0583	DNA-binding transcription factor activity
CKQ55_RS26900	COG2841	Protein conserved in bacteria
CKQ55_RS26925	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CKQ55_RS26940	COG4821	SIS domain
CKQ55_RS26990	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CKQ55_RS27020	COG3391	amine dehydrogenase activity
CKQ55_RS27025	COG4771	TonB-dependent receptor
CKQ55_RS27035	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CKQ55_RS27050	COG1172	Belongs to the binding-protein-dependent transport system permease family
CKQ55_RS27060	COG1609	Transcriptional regulator
CKQ55_RS27090	COG1652	LysM domain
CKQ55_RS27095	COG4771	TonB-dependent receptor
CKQ55_RS27100	COG1021	2,3-dihydroxybenzoate-AMP ligase
CKQ55_RS27120	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CKQ55_RS27120	COG2226	methyltransferase
CKQ55_RS27120	COG3433	isochorismatase activity
CKQ55_RS27130	COG2375	cellular response to nickel ion
CKQ55_RS27130	COG1132	(ABC) transporter
CKQ55_RS27135	COG1132	(ABC) transporter
CKQ55_RS27140	COG2814	Major facilitator Superfamily
CKQ55_RS27145	COG1169	isochorismate synthase
CKQ55_RS27175	COG0814	amino acid
CKQ55_RS27180	COG1760	l-serine dehydratase
CKQ55_RS27215	COG2801	Transposase and inactivated derivatives
CKQ55_RS27225	COG2801	Transposase and inactivated derivatives
CKQ55_RS27285	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CKQ55_RS27290	COG0022	dehydrogenase e1 component
CKQ55_RS27295	COG0508	dehydrogenase complex catalyzes the overall conversion of
CKQ55_RS27300	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CKQ55_RS27315	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CKQ55_RS27325	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS27335	COG0401	homolog of Blt101
CKQ55_RS27345	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CKQ55_RS27350	COG2771	luxR family
CKQ55_RS27350	COG2200	EAL domain
CKQ55_RS27355	COG1649	PFAM Uncharacterised BCR, COG1649
CKQ55_RS27385	COG1609	Transcriptional regulator
CKQ55_RS27390	COG1082	Xylose isomerase domain protein TIM barrel
CKQ55_RS27395	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS27400	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CKQ55_RS27405	COG1116	anion transmembrane transporter activity
CKQ55_RS27410	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CKQ55_RS27415	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CKQ55_RS27420	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CKQ55_RS27425	COG0076	glutamate decarboxylase activity
CKQ55_RS27440	COG0519	Catalyzes the synthesis of GMP from XMP
CKQ55_RS27440	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CKQ55_RS27455	COG0439	Biotin carboxylase
CKQ55_RS27470	COG1116	anion transmembrane transporter activity
CKQ55_RS27470	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CKQ55_RS27495	COG1280	lysine exporter protein (LysE YggA)
CKQ55_RS27530	COG2271	Major facilitator Superfamily
CKQ55_RS27540	COG0583	DNA-binding transcription factor activity
CKQ55_RS27545	COG0583	DNA-binding transcription factor activity
CKQ55_RS27555	COG1280	lysine exporter protein (LysE YggA)
CKQ55_RS27570	COG0243	molybdopterin cofactor binding
CKQ55_RS27575	COG3781	membrane
CKQ55_RS27590	COG1764	response to oxidative stress
CKQ55_RS27620	COG0488	(ABC) transporter
CKQ55_RS27645	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CKQ55_RS27655	COG1064	alcohol dehydrogenase
CKQ55_RS27665	COG0747	negative chemotaxis
CKQ55_RS27675	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CKQ55_RS27685	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CKQ55_RS27695	COG2814	Major facilitator Superfamily
CKQ55_RS27710	COG2864	formate dehydrogenase
CKQ55_RS27715	COG0437	4 iron, 4 sulfur cluster binding
CKQ55_RS27730	COG0697	spore germination
CKQ55_RS27750	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CKQ55_RS27755	COG1140	nitrate reductase beta subunit
CKQ55_RS27760	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CKQ55_RS27765	COG2181	nitrate reductase activity
CKQ55_RS27770	COG2162	N-hydroxyarylamine O-acetyltransferase activity
CKQ55_RS27775	COG1178	ABC-type Fe3 transport system permease component
CKQ55_RS27780	COG1840	ABC-type Fe3 transport system, periplasmic component
CKQ55_RS27785	COG3842	ATPase activity
CKQ55_RS27790	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CKQ55_RS27795	COG4977	sequence-specific DNA binding
CKQ55_RS27805	COG2211	Major facilitator Superfamily
CKQ55_RS27835	COG0625	glutathione transferase activity
CKQ55_RS27840	COG1609	Transcriptional regulator
CKQ55_RS27850	COG2271	Major facilitator Superfamily
CKQ55_RS27860	COG1126	abc transporter atp-binding protein
CKQ55_RS27875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS27880	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CKQ55_RS27885	COG1473	amidohydrolase
CKQ55_RS27890	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CKQ55_RS27915	COG4772	TonB-dependent receptor
CKQ55_RS27920	COG3691	Protein conserved in bacteria
CKQ55_RS27930	COG2130	NADP-dependent
CKQ55_RS27960	COG1247	-acetyltransferase
CKQ55_RS27965	COG3238	Protein conserved in bacteria
CKQ55_RS27975	COG0747	negative chemotaxis
CKQ55_RS27980	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS27985	COG4677	pectinesterase activity
CKQ55_RS27990	COG0596	Alpha beta hydrolase
CKQ55_RS28015	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS28020	COG1177	transmembrane transport
CKQ55_RS28025	COG1176	ABC-type spermidine putrescine transport system, permease component I
CKQ55_RS28030	COG3842	ATPase activity
CKQ55_RS28035	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CKQ55_RS28045	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CKQ55_RS28050	COG1271	oxidase subunit
CKQ55_RS28055	COG1294	oxidase, subunit
CKQ55_RS28070	COG0826	peptidase U32
CKQ55_RS28075	COG1396	sequence-specific DNA binding
CKQ55_RS28080	COG3135	benzoate transporter
CKQ55_RS28085	COG2207	Transcriptional regulator
CKQ55_RS28090	COG0697	spore germination
CKQ55_RS28100	COG0747	negative chemotaxis
CKQ55_RS28105	COG2195	Cleaves the N-terminal amino acid of tripeptides
CKQ55_RS28110	COG0500	methyltransferase
CKQ55_RS28115	COG1275	C4-dicarboxylate transporter malic acid transport protein
CKQ55_RS28120	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CKQ55_RS28125	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CKQ55_RS28135	COG2272	Belongs to the type-B carboxylesterase lipase family
CKQ55_RS28140	COG5383	Protein conserved in bacteria
CKQ55_RS28145	COG3485	protocatechuate 3,4-dioxygenase
CKQ55_RS28150	COG3485	protocatechuate 3,4-dioxygenase
CKQ55_RS28155	COG0583	DNA-binding transcription factor activity
CKQ55_RS28185	COG3038	cytochrome b561
CKQ55_RS28205	COG3706	GGDEF domain
CKQ55_RS28210	COG0583	DNA-binding transcription factor activity
CKQ55_RS28215	COG0456	acetyltransferase
CKQ55_RS28220	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CKQ55_RS28225	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS28230	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CKQ55_RS28240	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CKQ55_RS28265	COG4122	O-methyltransferase activity
CKQ55_RS28270	COG1643	Atp-dependent helicase
CKQ55_RS28285	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CKQ55_RS28290	COG3327	negative regulation of DNA-templated transcription, initiation
CKQ55_RS28295	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
CKQ55_RS28300	COG0183	Belongs to the thiolase family
CKQ55_RS28305	COG2050	protein possibly involved in aromatic compounds catabolism
CKQ55_RS28310	COG1250	3-hydroxyacyl-CoA dehydrogenase
CKQ55_RS28315	COG1024	Enoyl-CoA hydratase
CKQ55_RS28320	COG1024	Enoyl-CoA hydratase
CKQ55_RS28325	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CKQ55_RS28330	COG2151	metal-sulfur cluster biosynthetic enzyme
CKQ55_RS28335	COG3396	Phenylacetate-CoA oxygenase
CKQ55_RS28340	COG3460	Phenylacetate-CoA oxygenase
CKQ55_RS28345	COG3396	Phenylacetate-CoA oxygenase
CKQ55_RS28350	COG2030	dehydratase
CKQ55_RS28350	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS28370	COG3813	Protein conserved in bacteria
CKQ55_RS28385	COG0583	DNA-binding transcription factor activity
CKQ55_RS28420	COG2162	N-hydroxyarylamine O-acetyltransferase activity
CKQ55_RS28425	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CKQ55_RS28440	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS28445	COG2378	regulation of single-species biofilm formation
CKQ55_RS28450	COG0406	alpha-ribazole phosphatase activity
CKQ55_RS28465	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CKQ55_RS28470	COG3708	Transcriptional regulator
CKQ55_RS28470	COG2207	Transcriptional regulator
CKQ55_RS28475	COG2207	Transcriptional regulator
CKQ55_RS28490	COG1566	PFAM secretion protein HlyD family protein
CKQ55_RS28515	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CKQ55_RS28545	COG2072	flavoprotein involved in K transport
CKQ55_RS28550	COG0583	DNA-binding transcription factor activity
CKQ55_RS28555	COG1126	abc transporter atp-binding protein
CKQ55_RS28560	COG5285	phytanoyl-CoA dioxygenase
CKQ55_RS28575	COG1012	belongs to the aldehyde dehydrogenase family
CKQ55_RS28580	COG2207	Transcriptional regulator
CKQ55_RS28585	COG3784	Protein of unknown function (DUF1318)
CKQ55_RS28595	COG2911	Protein conserved in bacteria
CKQ55_RS28600	COG0586	Pfam SNARE associated Golgi protein
CKQ55_RS28605	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CKQ55_RS28610	COG3187	Heat shock protein
CKQ55_RS28615	COG3042	response to heat
CKQ55_RS28650	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CKQ55_RS28650	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CKQ55_RS28650	COG1013	pyruvate-flavodoxin oxidoreductase activity
CKQ55_RS28650	COG0674	pyruvate-flavodoxin oxidoreductase activity
CKQ55_RS28655	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CKQ55_RS28665	COG0589	response to stress
CKQ55_RS28690	COG0513	Belongs to the DEAD box helicase family
CKQ55_RS28710	COG1349	DNA-binding transcription factor activity
CKQ55_RS28715	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS28720	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CKQ55_RS28725	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CKQ55_RS28745	COG3477	response to acidic pH
CKQ55_RS28750	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CKQ55_RS28750	COG2885	chlorophyll binding
CKQ55_RS28775	COG0300	oxidoreductase activity
CKQ55_RS28785	COG0583	DNA-binding transcription factor activity
CKQ55_RS28810	COG0789	Transcriptional regulator
CKQ55_RS28820	COG0300	oxidoreductase activity
CKQ55_RS28835	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CKQ55_RS28845	COG3272	Protein of unknown function (DUF1722)
CKQ55_RS28850	COG4580	involved in the transport of maltose and maltodextrins
CKQ55_RS28860	COG0583	DNA-binding transcription factor activity
CKQ55_RS28865	COG0786	glutamate:sodium symporter activity
CKQ55_RS28880	COG0640	Transcriptional regulator
CKQ55_RS28910	COG2211	Major facilitator Superfamily
CKQ55_RS28915	COG3507	Belongs to the glycosyl hydrolase 43 family
CKQ55_RS28985	COG2885	chlorophyll binding
CKQ55_RS29015	COG0693	protein deglycase activity
CKQ55_RS29025	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CKQ55_RS29040	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CKQ55_RS29045	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CKQ55_RS29055	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CKQ55_RS29065	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CKQ55_RS29070	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CKQ55_RS29090	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CKQ55_RS29095	COG1045	serine acetyltransferase
CKQ55_RS29105	COG0765	amino acid transport
CKQ55_RS29110	COG1126	abc transporter atp-binding protein
CKQ55_RS29115	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CKQ55_RS29120	COG1605	Chorismate mutase
CKQ55_RS29130	COG0765	amino acid transport
CKQ55_RS29135	COG0765	amino acid transport
CKQ55_RS29140	COG4221	oxidoreductase activity
CKQ55_RS29155	COG0436	Aminotransferase
CKQ55_RS29160	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CKQ55_RS29165	COG1984	allophanate hydrolase subunit 2
CKQ55_RS29170	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CKQ55_RS29180	COG0697	spore germination
CKQ55_RS29185	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CKQ55_RS29190	COG0439	Biotin carboxylase
CKQ55_RS29195	COG0511	ligase activity, forming carbon-carbon bonds
CKQ55_RS29200	COG2188	Transcriptional regulator
CKQ55_RS29215	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CKQ55_RS29235	COG0477	Major facilitator Superfamily
CKQ55_RS29240	COG1464	Belongs to the NlpA lipoprotein family
CKQ55_RS29245	COG2011	ABC-type metal ion transport system permease component
CKQ55_RS29260	COG4166	transmembrane transport
CKQ55_RS29265	COG2866	Carboxypeptidase
CKQ55_RS29270	COG4948	Mandelate Racemase Muconate Lactonizing
CKQ55_RS29275	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CKQ55_RS29280	COG3180	Ammonia monooxygenase
CKQ55_RS29295	COG3106	COG3106 Predicted ATPase
CKQ55_RS29300	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CKQ55_RS29310	COG1983	PspC domain protein
CKQ55_RS29320	COG1842	Phage shock protein A
CKQ55_RS29325	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CKQ55_RS29335	COG1473	amidohydrolase
CKQ55_RS29350	COG4166	transmembrane transport
CKQ55_RS29360	COG4171	peptide transport system, permease
CKQ55_RS29370	COG4172	Belongs to the ABC transporter superfamily
CKQ55_RS29375	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CKQ55_RS29395	COG1349	DNA-binding transcription factor activity
CKQ55_RS29405	COG0023	Translation Initiation Factor
CKQ55_RS29415	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CKQ55_RS29420	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
CKQ55_RS29425	COG0671	phosphoesterase, PA-phosphatase related
CKQ55_RS29435	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CKQ55_RS29460	COG0616	signal peptide processing
CKQ55_RS29470	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS29480	COG2207	Transcriptional regulator
CKQ55_RS29490	COG2211	Major facilitator Superfamily
CKQ55_RS29495	COG1187	pseudouridine synthase activity
CKQ55_RS29500	COG0009	L-threonylcarbamoyladenylate synthase
CKQ55_RS29510	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CKQ55_RS29515	COG0512	Glutamine amidotransferase of anthranilate synthase
CKQ55_RS29515	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CKQ55_RS29520	COG0134	indole-3-glycerol-phosphate synthase activity
CKQ55_RS29520	COG0135	phosphoribosylanthranilate isomerase activity
CKQ55_RS29545	COG0583	DNA-binding transcription factor activity
CKQ55_RS29555	COG2207	Transcriptional regulator
CKQ55_RS29555	COG3708	Transcriptional regulator
CKQ55_RS29570	COG3047	cAMP biosynthetic process
CKQ55_RS29585	COG0038	chloride channel
CKQ55_RS29605	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CKQ55_RS29610	COG1028	Short-chain dehydrogenase reductase Sdr
CKQ55_RS29615	COG1988	membrane-bound metal-dependent
CKQ55_RS29620	COG1823	symporter activity
CKQ55_RS29640	COG1486	melibiose metabolic process
CKQ55_RS29645	COG2169	Transcriptional regulator
CKQ55_RS29645	COG1917	Cupin 2, conserved barrel domain protein
CKQ55_RS29650	COG1447	Phosphotransferase system cellobiose-specific component IIA
CKQ55_RS29655	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS29660	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CKQ55_RS29665	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CKQ55_RS29675	COG0322	excinuclease ABC activity
CKQ55_RS29680	COG4907	membrane protein (DUF2207)
CKQ55_RS29685	COG1704	LemA family
CKQ55_RS29690	COG3678	ATP-independent chaperone mediated protein folding
CKQ55_RS29715	COG3138	arginine N-succinyltransferase
CKQ55_RS29725	COG0708	Exodeoxyribonuclease III
CKQ55_RS29735	COG0398	Pfam SNARE associated Golgi protein
CKQ55_RS29740	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CKQ55_RS29745	COG4134	Bacterial extracellular solute-binding protein
CKQ55_RS29755	COG4136	ATPase activity
CKQ55_RS29760	COG2897	thiosulfate sulfurtransferase activity
CKQ55_RS29765	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CKQ55_RS29770	COG0494	nUDIX hydrolase
CKQ55_RS29785	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CKQ55_RS29790	COG0709	Synthesizes selenophosphate from selenide and ATP
CKQ55_RS29805	COG0778	Nitroreductase
CKQ55_RS29810	COG0616	signal peptide processing
CKQ55_RS29815	COG0252	asparaginase activity
CKQ55_RS29820	COG1335	isochorismatase
CKQ55_RS29825	COG2814	Major facilitator Superfamily
CKQ55_RS29830	COG1349	DNA-binding transcription factor activity
CKQ55_RS29835	COG0667	Aldo Keto reductase
CKQ55_RS29840	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CKQ55_RS29845	COG0191	fructose-bisphosphate aldolase activity
CKQ55_RS29850	COG1063	alcohol dehydrogenase
CKQ55_RS29855	COG2271	Major facilitator Superfamily
CKQ55_RS29860	COG1063	alcohol dehydrogenase
CKQ55_RS29875	COG3139	Protein of unknown function (DUF1315)
CKQ55_RS29900	COG0656	L-ascorbic acid biosynthetic process
CKQ55_RS29905	COG3713	MltA-interacting MipA family protein
CKQ55_RS29910	COG2766	serine protein kinase
CKQ55_RS29920	COG0859	PFAM glycosyl transferase family 9
CKQ55_RS29930	COG2199	diguanylate cyclase activity
CKQ55_RS29935	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CKQ55_RS29945	COG2207	Transcriptional regulator
CKQ55_RS29950	COG2807	transmembrane transport
CKQ55_RS29955	COG0504	CTP synthase activity
CKQ55_RS29960	COG1683	Conserved Protein
CKQ55_RS29965	COG3189	MarR family transcriptional regulator
CKQ55_RS29970	COG3042	response to heat
CKQ55_RS29975	COG2203	Gaf domain
CKQ55_RS29975	COG2199	diguanylate cyclase activity
CKQ55_RS29995	COG3182	Iron-regulated membrane protein
CKQ55_RS30005	COG1560	Kdo2-lipid A biosynthetic process
CKQ55_RS30010	COG2226	methyltransferase
CKQ55_RS30015	COG1595	DNA-templated transcription, initiation
CKQ55_RS30020	COG3712	iron ion homeostasis
CKQ55_RS30025	COG4772	TonB-dependent receptor
CKQ55_RS30030	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
CKQ55_RS30035	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS30040	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CKQ55_RS30045	COG1120	ATPase activity
CKQ55_RS30055	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CKQ55_RS30060	COG3706	GGDEF domain
CKQ55_RS30065	COG0538	isocitrate dehydrogenase activity
CKQ55_RS30075	COG2801	Transposase and inactivated derivatives
CKQ55_RS30085	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CKQ55_RS30090	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CKQ55_RS30095	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CKQ55_RS30110	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CKQ55_RS30240	COG4644	lycopene metabolic process
CKQ55_RS30295	COG1196	nuclear chromosome segregation
CKQ55_RS30420	COG0556	nucleotide-excision repair
CKQ55_RS30435	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CKQ55_RS30440	COG2135	peptidase activity
CKQ55_RS30750	COG1475	DNA binding
CKQ55_RS30760	COG0629	single-stranded DNA binding
CKQ55_RS30945	COG2135	peptidase activity
CKQ55_RS31220	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CKQ55_RS31220	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CKQ55_RS31305	COG3039	Transposase
CKQ55_RS31315	COG3039	Transposase
CKQ55_RS31320	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CKQ55_RS31365	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CKQ55_RS31415	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS31420	COG1324	tolerance protein
CKQ55_RS31440	COG2826	transposase and inactivated derivatives, IS30 family
CKQ55_RS31455	COG0456	acetyltransferase
CKQ55_RS31480	COG0456	acetyltransferase
CKQ55_RS31505	COG2610	gluconate transmembrane transporter activity
CKQ55_RS31540	COG5001	Diguanylate cyclase
CKQ55_RS31565	COG0789	Transcriptional regulator
CKQ55_RS31640	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
CKQ55_RS31670	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CKQ55_RS31675	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CKQ55_RS31730	COG2826	transposase and inactivated derivatives, IS30 family
CKQ55_RS31740	COG3039	Transposase
CKQ55_RS31745	COG0456	acetyltransferase
CKQ55_RS31765	COG0673	inositol 2-dehydrogenase activity
CKQ55_RS31770	COG1324	tolerance protein
CKQ55_RS31805	COG1192	Involved in chromosome partitioning
CKQ55_RS31850	COG0484	heat shock protein binding