locus_tag old_locus_tag gene Name start end strand product note type ID NCBI YP_009903475.1 18910 19233 + tape assembly chaperone tail assembly chaperone frameshift product%3B similar by BLASTp to phage T1 gp39 (NCBI YP_003906.1) CDS cds-YP_009903475.1 http://www.ncbi.nlm.nih.gov/gene/?term= YP_009903476.1 18593 18919 + tape assembly chaperone similar by BLASTp to phage T1 gp40 (NCBI YP_003905.1) and contains InterPro domain IPR014859 for phage tail assembly chaperone family CDS cds-YP_009903476.1 http://www.ncbi.nlm.nih.gov/gene/?term= H1O13_gp01 CPT_Sin4_001 H1O13_gp01 629 1226 + hypothetical protein gene gene-H1O13_gp01 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp01 H1O13_gp02 CPT_Sin4_002 H1O13_gp02 1287 1451 + hypothetical protein gene gene-H1O13_gp02 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp02 H1O13_gp03 CPT_Sin4_003 H1O13_gp03 1429 1650 + hypothetical protein gene gene-H1O13_gp03 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp03 H1O13_gp04 CPT_Sin4_004 H1O13_gp04 1711 1902 + hypothetical protein gene gene-H1O13_gp04 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp04 H1O13_gp05 CPT_Sin4_005 H1O13_gp05 1910 2027 + hypothetical protein gene gene-H1O13_gp05 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp05 H1O13_gp06 CPT_Sin4_006 H1O13_gp06 2084 2321 + hypothetical protein similar by BLASTp to phage T1 gp74 (NCBI YP_003870.1) gene gene-H1O13_gp06 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp06 H1O13_gp07 CPT_Sin4_007 H1O13_gp07 2378 2603 + hypothetical protein gene gene-H1O13_gp07 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp07 H1O13_gp08 CPT_Sin4_008 H1O13_gp08 2603 2934 + hypothetical protein gene gene-H1O13_gp08 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp08 H1O13_gp09 CPT_Sin4_009 H1O13_gp09 3008 3278 + hypothetical protein similar by BLASTp to phage T1 gp74 (NCBI YP_003870.1) gene gene-H1O13_gp09 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp09 H1O13_gp10 CPT_Sin4_010 H1O13_gp10 3261 3472 + hypothetical protein gene gene-H1O13_gp10 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp10 H1O13_gp11 CPT_Sin4_011 H1O13_gp11 3535 3917 + hypothetical protein gene gene-H1O13_gp11 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp11 H1O13_gp12 CPT_Sin4_012 H1O13_gp12 3916 4229 + hypothetical protein gene gene-H1O13_gp12 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp12 H1O13_gp13 CPT_Sin4_013 H1O13_gp13 4219 4474 + hypothetical protein gene gene-H1O13_gp13 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp13 H1O13_gp14 CPT_Sin4_014 H1O13_gp14 4460 4656 + hypothetical protein gene gene-H1O13_gp14 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp14 H1O13_gp15 CPT_Sin4_015 H1O13_gp15 4724 4954 + hypothetical protein gene gene-H1O13_gp15 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp15 H1O13_gp16 CPT_Sin4_016 H1O13_gp16 4941 5442 + hypothetical protein gene gene-H1O13_gp16 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp16 H1O13_gp17 CPT_Sin4_017 H1O13_gp17 5507 5838 + hypothetical protein gene gene-H1O13_gp17 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp17 H1O13_gp18 CPT_Sin4_018 H1O13_gp18 5861 6095 + hypothetical protein gene gene-H1O13_gp18 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp18 H1O13_gp19 CPT_Sin4_019 H1O13_gp19 6194 6418 + hypothetical protein gene gene-H1O13_gp19 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp19 H1O13_gp20 CPT_Sin4_020 H1O13_gp20 6401 6990 + hypothetical protein gene gene-H1O13_gp20 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp20 H1O13_gp21 CPT_Sin4_021 H1O13_gp21 7046 7296 + hypothetical protein gene gene-H1O13_gp21 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp21 H1O13_gp22 CPT_Sin4_022 H1O13_gp22 7272 7517 + hypothetical protein gene gene-H1O13_gp22 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp22 H1O13_gp23 CPT_Sin4_023 H1O13_gp23 7639 7840 + hypothetical protein gene gene-H1O13_gp23 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp23 H1O13_gp24 CPT_Sin4_024 H1O13_gp24 7822 8097 + hypothetical protein gene gene-H1O13_gp24 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp24 H1O13_gp25 CPT_Sin4_025 H1O13_gp25 8164 8701 + terminase small subunit similar by BLASTp to phage T1 gp54 (NCBI YP_003891.1) gene gene-H1O13_gp25 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp25 H1O13_gp26 CPT_Sin4_026 H1O13_gp26 8702 10312 + terminase large subunit similar by BLASTp to phage T1 gp53 (NCBI YP_003892.1) gene gene-H1O13_gp26 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp26 H1O13_gp27 CPT_Sin4_027 H1O13_gp27 10348 11665 + portal protein similar by BLASTp to phage T1 gp52 (NCBI YP_003893.1) gene gene-H1O13_gp27 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp27 H1O13_gp28 CPT_Sin4_028 H1O13_gp28 11647 12152 + HNH endonuclease similar by BLASTp to phage T1 gp63 (NCBI YP_003881.1) gene gene-H1O13_gp28 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp28 H1O13_gp29 CPT_Sin4_029 H1O13_gp29 12117 12897 + capsid morphogenesis protein contains InterPro domain IPR006528 and similar by BLASTp to phage T1 gp51 (NCBI YP_003894.1) gene gene-H1O13_gp29 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp29 H1O13_gp30 CPT_Sin4_030 H1O13_gp30 12886 14027 + capsid maturation protease HHPred predicted structural similarity at 78 probability to phage T4 prohead core protein protease gp21 Protein Data Bank entry 5JBL_E over predicted catalytic third of protein and similar by BLASTp to phage T1 gp50 (NCBI YP_003895.1) gene gene-H1O13_gp30 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp30 H1O13_gp31 CPT_Sin4_031 H1O13_gp31 14067 14594 + capsid decoration protein HHPred predicted structural similarity at 91 probability to phage TW1 Protein Data Bank Entry 5WK1_S capsid stabilizing protein%2C equivalent to phage lambda gpD dec protein%2C over most of protein and similar by BLASTp to phage T1 gp48 and gp49 (NCBI YP_003996.1 and YP_003997.1) gene gene-H1O13_gp31 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp31 H1O13_gp32 CPT_Sin4_032 H1O13_gp32 14696 15666 + major capsid protein similar by BLASTp to phage T1 gp47 (NCBI YP_003898.1) gene gene-H1O13_gp32 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp32 H1O13_gp33 CPT_Sin4_033 H1O13_gp33 15745 16062 + hypothetical protein gene gene-H1O13_gp33 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp33 H1O13_gp34 CPT_Sin4_034 H1O13_gp34 16104 16532 + head-to-tail connector complex protein HHPred predicted structural similarity at 96 probability to Bsubtilis yqbG (myophage protein%2C see PMID 29279385) Protein Data Bank entry 1ZTS over most of protein and similar by BLASTp to phage T1 gp45 (NCBI YP_003900.1) gene gene-H1O13_gp34 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp34 H1O13_gp35 CPT_Sin4_035 H1O13_gp35 16527 16915 + head-to-tail connector complex protein HHPred predicted structural similarity at 96 probability to phage SPP1 gp15 Protein Data Bank entry 5A21_F over most of protein and similar by BLASTp to phage T1 gp44 (NCBI YP_003901.1) gene gene-H1O13_gp35 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp35 H1O13_gp36 CPT_Sin4_036 H1O13_gp36 16896 17345 + hypothetical protein similar by BLASTp to phage T1 gp43 (NCBI YP_003902.1) gene gene-H1O13_gp36 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp36 H1O13_gp37 CPT_Sin4_037 H1O13_gp37 17324 17766 + minor tail protein similar by BLASTp to phage T1 gp42 (NCBI YP_003903.1) gene gene-H1O13_gp37 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp37 H1O13_gp38 CPT_Sin4_038 H1O13_gp38 17847 18516 + major tail protein similar by BLASTp to phage T1 gp41 (NCBI YP_003904.1) and contains phage tail tube protein family domain InterPr IPR014918 gene gene-H1O13_gp38 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp38 H1O13_gp39 CPT_Sin4_040 H1O13_gp39 18580 19233 + gene gene-H1O13_gp39 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp39 H1O13_gp40 CPT_Sin4_039 H1O13_gp40 18580 19233 + gene gene-H1O13_gp40 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp40 H1O13_gp41 CPT_Sin4_041 H1O13_gp41 19259 22236 + tape measure protein similar by BLASTp to phage lambda tape measure protein H (SwissProt P03736) and to phage T1 gp38 (NCBI YP_003907.1) gene gene-H1O13_gp41 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp41 H1O13_gp42 CPT_Sin4_042 H1O13_gp42 22228 22583 + tail tip protein similar by BLASTp to phage N15 tail assembly protein M (SwissProt accession 473826) gene gene-H1O13_gp42 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp42 H1O13_gp43 CPT_Sin4_043 H1O13_gp43 22640 23405 + tail tip protein similar by BLASTp to phage lambda tail tip protein L (SwissProt accession 473825) gene gene-H1O13_gp43 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp43 H1O13_gp44 CPT_Sin4_044 H1O13_gp44 23393 24144 + tail tip protein similar by BLASTp to phage lambda tail tip assembly protein K (SwissProt accession 473823) gene gene-H1O13_gp44 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp44 H1O13_gp45 CPT_Sin4_045 H1O13_gp45 24107 24721 + tail assembly protein similar by BLASTp to phage lambda tail tip assembly protein I (SwissProt accession 473819) gene gene-H1O13_gp45 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp45 H1O13_gp46 CPT_Sin4_046 H1O13_gp46 24796 28519 + tail fiber protein similar by BLASTp to phage lambda tip attachment protein J (SwissProt P03749) and to phage T1 gp33 (NCBI YP_003912.1) gene gene-H1O13_gp46 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp46 H1O13_gp47 CPT_Sin4_047 H1O13_gp47 28725 29484 - hypothetical protein gene gene-H1O13_gp47 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp47 H1O13_gp48 CPT_Sin4_048 H1O13_gp48 29477 31879 - tail fiber protein similar by BLASTp to phage T1 gp26 (NCBI YP_003919.1) gene gene-H1O13_gp48 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp48 H1O13_gp49 CPT_Sin4_049 H1O13_gp49 31928 32399 - ssDNA-binding protein similar by BLASTp to phage T1 gp27 (NCBI YP_003918.1) gene gene-H1O13_gp49 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp49 H1O13_gp50 CPT_Sin4_050 H1O13_gp50 32426 33095 - recombination protein similar by BLASTp to phage T1 gp28 (NCBI YP_003917.1) gene gene-H1O13_gp50 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp50 H1O13_gp51 CPT_Sin4_051 H1O13_gp51 33142 34200 - exodeoxyribonuclease VIII similar by BLASTp to phage T1 gp29 (NCBI YP_003916.1) gene gene-H1O13_gp51 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp51 H1O13_gp52 CPT_Sin4_052 H1O13_gp52 34681 35657 - DNA primase similar by BLASTp to phage T1 gp24 (NCBI YP_003921.1) gene gene-H1O13_gp52 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp52 H1O13_gp53 CPT_Sin4_053 H1O13_gp53 35640 36172 - HNH endonuclease similar by BLASTp to phage T1 gp63 (NCBI YP_003881.1) gene gene-H1O13_gp53 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp53 H1O13_gp54 CPT_Sin4_054 H1O13_gp54 36236 36647 - putative transcriptional regulator contains CATH superfamily lambda repressor-like DNA-binding domains (IPR010982) and similar by BLASTp to phage T1 gp23 (NCBI YP_003922.1) gene gene-H1O13_gp54 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp54 H1O13_gp55 CPT_Sin4_055 H1O13_gp55 36719 38762 + DNA helicase similar by BLASTp to phage T1 gp22 (NCBI YP_003923.1) gene gene-H1O13_gp55 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp55 H1O13_gp56 CPT_Sin4_056 H1O13_gp56 38751 39169 + putative holliday junction resolvase HHPred predicted structural similarity at 100 probability to Psychrobacter Vrr-NUC holliday junction resolvase protein from Protein Data Bank entry 4QBL_E over most of protein and others%3B InterPro domain IPR014883 and similar by BLASTp to phage T1 gp21 (NCBI YP_003924.1) gene gene-H1O13_gp56 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp56 H1O13_gp57 CPT_Sin4_057 H1O13_gp57 39231 39521 + hypothetical protein gene gene-H1O13_gp57 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp57 H1O13_gp58 CPT_Sin4_058 H1O13_gp58 39510 40255 + DNA adenine methyltransferase similar by BLASTp to phage T1 gp20 (NCBI YP_003925.1) and contains InterPro domain IPR008593 DNA N-6-adenine methyltransferase - Dam domain%2C see PMID 3312202 gene gene-H1O13_gp58 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp58 H1O13_gp59 CPT_Sin4_059 H1O13_gp59 40248 40495 + hypothetical protein gene gene-H1O13_gp59 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp59 H1O13_gp60 CPT_Sin4_060 H1O13_gp60 40547 40796 + hypothetical protein gene gene-H1O13_gp60 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp60 H1O13_gp61 CPT_Sin4_061 H1O13_gp61 40785 41044 + hypothetical protein gene gene-H1O13_gp61 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp61 H1O13_gp62 CPT_Sin4_062 H1O13_gp62 41131 42270 + hypothetical protein gene gene-H1O13_gp62 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp62 H1O13_gp63 CPT_Sin4_063 H1O13_gp63 42298 42796 + polynucleotide kinase/phosphatase similar by BLASTp to phage T1 gp64 (NCBI YP_003880.1) and phage T4 pseT polynucleotide kinase (NCBI NP_049834.1) gene gene-H1O13_gp63 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp63 H1O13_gp64 CPT_Sin4_064 H1O13_gp64 42782 43374 + nucleoside triphosphate hydrolase contains InterPro domains IPR023214 and IPR005519 and similar by BLASTp to phage T1 gp62 (NCBI YP_003883.1) gene gene-H1O13_gp64 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp64 H1O13_gp65 CPT_Sin4_065 H1O13_gp65 43488 43716 + pinholin similar by BLASTp to phage T1 gp13 (SwissProt Q6XQ99) holin%2C with one transmembrane domain by TMHMM gene gene-H1O13_gp65 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp65 H1O13_gp66 CPT_Sin4_066 H1O13_gp66 43705 44200 + SAR endolysin similar by BLASTp to phage T1 gp12 (NCBI YP_003933.1) endolysin%2C and contains the weak N-terminal Signal-anchor-release (SAR) domain gene gene-H1O13_gp66 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp66 H1O13_gp67 CPT_Sin4_067 H1O13_gp67 44187 44622 + u-spanin similar by BLASTp to phage T1 unimolecular spanin (SwissProt Q6XQ97)%2C see PMID 30135120 gene gene-H1O13_gp67 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp67 H1O13_gp68 CPT_Sin4_068 H1O13_gp68 44692 45163 - hypothetical protein gene gene-H1O13_gp68 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp68 H1O13_gp69 CPT_Sin4_069 H1O13_gp69 45157 46737 - hypothetical protein gene gene-H1O13_gp69 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp69 H1O13_gp70 CPT_Sin4_070 H1O13_gp70 46851 47304 - hypothetical protein gene gene-H1O13_gp70 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp70 H1O13_gp71 CPT_Sin4_071 H1O13_gp71 47290 47485 - hypothetical protein gene gene-H1O13_gp71 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp71 H1O13_gp72 CPT_Sin4_072 H1O13_gp72 47469 47685 - hypothetical protein gene gene-H1O13_gp72 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp72 H1O13_gp73 CPT_Sin4_073 H1O13_gp73 47745 48451 - DNA cytosine methyltransferase similar by BLASTp to E. coli DNA cytosine methyltransferase (NCBI WP_096549131.1) and others gene gene-H1O13_gp73 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp73 H1O13_gp74 CPT_Sin4_074 H1O13_gp74 48434 48673 - hypothetical protein similar by BLASTp to phage T1 gp05 (NCBI YP_003940.1) gene gene-H1O13_gp74 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp74 H1O13_gp75 CPT_Sin4_075 H1O13_gp75 48734 49125 - hypothetical protein gene gene-H1O13_gp75 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp75 H1O13_gp76 CPT_Sin4_076 H1O13_gp76 49111 49364 - hypothetical protein gene gene-H1O13_gp76 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp76 H1O13_gp77 CPT_Sin4_077 H1O13_gp77 49347 49553 - hypothetical protein gene gene-H1O13_gp77 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp77 H1O13_gp78 CPT_Sin4_078 H1O13_gp78 49614 49907 - hypothetical protein gene gene-H1O13_gp78 http://www.ncbi.nlm.nih.gov/gene/?term=H1O13_gp78