AM360_RS00005	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS00025	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS00025	SM00387	Histidine kinase-like ATPases
AM360_RS00025	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS00030	SM00448	cheY-homologous receiver domain
AM360_RS00030	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS00060	SM00382	ATPases associated with a variety of cellular activities
AM360_RS00060	SM01086	C-terminal, D2-small domain, of ClpB protein
AM360_RS00075	SM00354	helix_turn _helix lactose operon repressor
AM360_RS00080	SM00487	DEAD-like helicases superfamily
AM360_RS00080	SM00490	helicase superfamily c-terminal domain
AM360_RS00145	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS00165	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM360_RS00270	SM00382	ATPases associated with a variety of cellular activities
AM360_RS00360	SM00487	DEAD-like helicases superfamily
AM360_RS00360	SM00490	helicase superfamily c-terminal domain
AM360_RS00375	SM00357	Cold shock protein domain
AM360_RS00375	SM00382	ATPases associated with a variety of cellular activities
AM360_RS00375	SM00959	Rho termination factor, N-terminal domain
AM360_RS00395	SM00984	UDP binding domain
AM360_RS00490	SM01219	AM360_RS00490
AM360_RS00550	SM00341	Helicase and RNase D C-terminal
AM360_RS00550	SM00487	DEAD-like helicases superfamily
AM360_RS00550	SM00490	helicase superfamily c-terminal domain
AM360_RS00550	SM00956	AM360_RS00550
AM360_RS00645	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AM360_RS00775	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AM360_RS00775	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AM360_RS00780	SM00649	Ribosomal protein L11/L12
AM360_RS00810	SM00663	RNA polymerase I subunit A N-terminus
AM360_RS00830	SM00267	diguanylate cyclase
AM360_RS00840	SM00876	Biotin and Thiamin Synthesis associated domain
AM360_RS00895	SM00411	bacterial (prokaryotic) histone like domain
AM360_RS00910	SM00387	Histidine kinase-like ATPases
AM360_RS00910	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS00915	SM00382	ATPases associated with a variety of cellular activities
AM360_RS00915	SM00448	cheY-homologous receiver domain
AM360_RS00920	SM01209	AM360_RS00920
AM360_RS00920	SM01210	AM360_RS00920
AM360_RS00925	SM00798	AICARFT/IMPCHase bienzyme
AM360_RS00925	SM00851	MGS-like domain
AM360_RS00985	SM00346	helix_turn_helix isocitrate lyase regulation
AM360_RS00990	SM01018	B12 binding domain
AM360_RS01040	SM00363	S4 RNA-binding domain
AM360_RS01125	SM00382	ATPases associated with a variety of cellular activities
AM360_RS01150	SM00563	Phosphate acyltransferases
AM360_RS01195	SM00829	Enoylreductase
AM360_RS01200	SM00382	ATPases associated with a variety of cellular activities
AM360_RS01205	SM01005	Alanine racemase, C-terminal domain
AM360_RS01240	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS01250	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS01285	SM00354	helix_turn _helix lactose operon repressor
AM360_RS01295	SM00382	ATPases associated with a variety of cellular activities
AM360_RS01325	SM00052	Putative diguanylate phosphodiesterase
AM360_RS01330	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS01335	SM00422	helix_turn_helix, mercury resistance
AM360_RS01430	SM00671	Sel1-like repeats.
AM360_RS01440	SM00448	cheY-homologous receiver domain
AM360_RS01440	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS01470	SM00382	ATPases associated with a variety of cellular activities
AM360_RS01475	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS01475	SM00387	Histidine kinase-like ATPases
AM360_RS01475	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS01475	SM00448	cheY-homologous receiver domain
AM360_RS01490	SM00072	Guanylate kinase homologues.
AM360_RS01500	SM00382	ATPases associated with a variety of cellular activities
AM360_RS01505	SM00382	ATPases associated with a variety of cellular activities
AM360_RS01530	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS01530	SM00866	AM360_RS01530
AM360_RS01555	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS01595	SM00271	DnaJ molecular chaperone homology domain
AM360_RS01635	SM00421	helix_turn_helix, Lux Regulon
AM360_RS01700	SM00883	Chaperonin 10 Kd subunit
AM360_RS01720	SM00382	ATPases associated with a variety of cellular activities
AM360_RS01770	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS01780	SM00841	Elongation factor P, C-terminal
AM360_RS01780	SM01185	AM360_RS01780
AM360_RS01855	SM00479	AM360_RS01855
AM360_RS01860	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS01860	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM360_RS01900	SM00646	AM360_RS01900
AM360_RS01905	SM00853	MutL C terminal dimerisation domain
AM360_RS01905	SM01340	AM360_RS01905
AM360_RS01925	SM00244	prohibitin homologues
AM360_RS01930	SM00244	prohibitin homologues
AM360_RS01945	SM00788	Adenylosuccinate synthetase
AM360_RS01955	SM00316	Ribosomal protein S1-like RNA-binding domain
AM360_RS01955	SM00357	Cold shock protein domain
AM360_RS01955	SM00955	AM360_RS01955
AM360_RS01960	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AM360_RS01985	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS01985	SM01134	AM360_RS01985
AM360_RS02010	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM360_RS02020	SM01007	Class II Aldolase and Adducin N-terminal domain
AM360_RS02080	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS02120	SM01091	Transporter associated domain
AM360_RS02165	SM00382	ATPases associated with a variety of cellular activities
AM360_RS02305	SM00642	Alpha-amylase domain
AM360_RS02315	SM00354	helix_turn _helix lactose operon repressor
AM360_RS02325	SM00831	Cation transporter/ATPase, N-terminus
AM360_RS02375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS02375	SM00866	AM360_RS02375
AM360_RS02515	SM00382	ATPases associated with a variety of cellular activities
AM360_RS02535	SM00829	Enoylreductase
AM360_RS02545	SM00947	Carbonic anhydrase
AM360_RS02615	SM00493	AM360_RS02615
AM360_RS02615	SM00778	Zinc-binding domain of primase-helicase
AM360_RS02615	SM00885	D5 N terminal like
AM360_RS02735	SM00422	helix_turn_helix, mercury resistance
AM360_RS02775	SM00448	cheY-homologous receiver domain
AM360_RS02775	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS02780	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS02780	SM00387	Histidine kinase-like ATPases
AM360_RS02780	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS02795	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
AM360_RS02830	SM00382	ATPases associated with a variety of cellular activities
AM360_RS02850	SM00382	ATPases associated with a variety of cellular activities
AM360_RS02880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS02890	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS02940	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS02965	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AM360_RS02990	SM00903	Flavin reductase like domain
AM360_RS03000	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS03050	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS03070	SM01119	AM360_RS03070
AM360_RS03125	SM00895	AM360_RS03125
AM360_RS03130	SM00829	Enoylreductase
AM360_RS03140	SM00382	ATPases associated with a variety of cellular activities
AM360_RS03190	SM00382	ATPases associated with a variety of cellular activities
AM360_RS03220	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS03225	SM00421	helix_turn_helix, Lux Regulon
AM360_RS03230	SM00421	helix_turn_helix, Lux Regulon
AM360_RS03250	SM00267	diguanylate cyclase
AM360_RS03300	SM00749	bacterial OsmY and nodulation domain
AM360_RS03325	SM01133	AM360_RS03325
AM360_RS03330	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AM360_RS03365	SM00382	ATPases associated with a variety of cellular activities
AM360_RS03370	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS03375	SM00382	ATPases associated with a variety of cellular activities
AM360_RS03400	SM00855	Phosphoglycerate mutase family
AM360_RS03405	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS03405	SM00871	Bacterial transcription activator, effector binding domain
AM360_RS03415	SM00448	cheY-homologous receiver domain
AM360_RS03415	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS03420	SM00387	Histidine kinase-like ATPases
AM360_RS03420	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS03430	SM00448	cheY-homologous receiver domain
AM360_RS03430	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS03490	SM00852	Probable molybdopterin binding domain
AM360_RS03520	SM00271	DnaJ molecular chaperone homology domain
AM360_RS03550	SM00904	Riboflavin kinase
AM360_RS03595	SM00448	cheY-homologous receiver domain
AM360_RS03600	SM00387	Histidine kinase-like ATPases
AM360_RS03625	SM00764	Citrate lyase ligase C-terminal domain
AM360_RS03660	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AM360_RS03665	SM00851	MGS-like domain
AM360_RS03665	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AM360_RS03710	SM00650	Ribosomal RNA adenine dimethylases
AM360_RS03730	SM00271	DnaJ molecular chaperone homology domain
AM360_RS03735	SM00448	cheY-homologous receiver domain
AM360_RS03740	SM00091	PAS domain
AM360_RS03740	SM00387	Histidine kinase-like ATPases
AM360_RS03765	SM00487	DEAD-like helicases superfamily
AM360_RS03765	SM00490	helicase superfamily c-terminal domain
AM360_RS03770	SM00486	DNA polymerase type-B family
AM360_RS03775	SM01007	Class II Aldolase and Adducin N-terminal domain
AM360_RS03790	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS03800	SM00382	ATPases associated with a variety of cellular activities
AM360_RS03870	SM01329	AM360_RS03870
AM360_RS03875	SM00917	LeuA allosteric (dimerisation) domain
AM360_RS03905	SM00354	helix_turn _helix lactose operon repressor
AM360_RS03980	SM00842	Cell division protein FtsA
AM360_RS03985	SM00864	Tubulin/FtsZ family, GTPase domain
AM360_RS03985	SM00865	Tubulin/FtsZ family, C-terminal domain
AM360_RS04000	SM00957	SecA DEAD-like domain
AM360_RS04000	SM00958	SecA preprotein cross-linking domain
AM360_RS04025	SM01240	AM360_RS04025
AM360_RS04050	SM00644	AM360_RS04050
AM360_RS04075	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS04075	SM00895	AM360_RS04075
AM360_RS04165	SM00564	beta-propeller repeat
AM360_RS04175	SM00947	Carbonic anhydrase
AM360_RS04180	SM00382	ATPases associated with a variety of cellular activities
AM360_RS04245	SM00487	DEAD-like helicases superfamily
AM360_RS04245	SM00490	helicase superfamily c-terminal domain
AM360_RS04245	SM00847	Helicase associated domain (HA2)  Add an annotation
AM360_RS04300	SM00382	ATPases associated with a variety of cellular activities
AM360_RS04315	SM00642	Alpha-amylase domain
AM360_RS04345	SM00382	ATPases associated with a variety of cellular activities
AM360_RS04390	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM360_RS04395	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM360_RS04415	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM360_RS04465	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM360_RS04475	SM00935	Outer membrane protein (OmpH-like)
AM360_RS04505	SM00481	DNA polymerase alpha chain like domain
AM360_RS04525	SM00977	TilS substrate C-terminal domain
AM360_RS04540	SM01322	AM360_RS04540
AM360_RS04585	SM00382	ATPases associated with a variety of cellular activities
AM360_RS04585	SM00930	AM360_RS04585
AM360_RS04650	SM00257	Lysin motif
AM360_RS04655	SM00849	Metallo-beta-lactamase superfamily
AM360_RS04670	SM00479	AM360_RS04670
AM360_RS04730	SM00900	AM360_RS04730
AM360_RS04790	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS04790	SM00895	AM360_RS04790
AM360_RS04865	SM01133	AM360_RS04865
AM360_RS04890	SM00861	Transketolase, pyrimidine binding domain
AM360_RS04900	SM00421	helix_turn_helix, Lux Regulon
AM360_RS04910	SM00493	AM360_RS04910
AM360_RS04910	SM00778	Zinc-binding domain of primase-helicase
AM360_RS04910	SM00885	D5 N terminal like
AM360_RS04975	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AM360_RS05025	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05030	SM00421	helix_turn_helix, Lux Regulon
AM360_RS05070	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05075	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS05075	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM360_RS05085	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05090	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05135	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS05140	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05155	SM00563	Phosphate acyltransferases
AM360_RS05160	SM01004	Delta-aminolevulinic acid dehydratase
AM360_RS05215	SM00098	Alkaline phosphatase homologues
AM360_RS05280	SM00448	cheY-homologous receiver domain
AM360_RS05280	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS05285	SM00091	PAS domain
AM360_RS05285	SM00387	Histidine kinase-like ATPases
AM360_RS05285	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS05300	SM00642	Alpha-amylase domain
AM360_RS05370	SM01323	AM360_RS05370
AM360_RS05440	SM00861	Transketolase, pyrimidine binding domain
AM360_RS05455	SM00981	AM360_RS05455
AM360_RS05520	SM00346	helix_turn_helix isocitrate lyase regulation
AM360_RS05590	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05590	SM00994	ClpX C4-type zinc finger
AM360_RS05590	SM01086	C-terminal, D2-small domain, of ClpB protein
AM360_RS05595	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05595	SM00464	Found in ATP-dependent protease La (LON)
AM360_RS05600	SM00411	bacterial (prokaryotic) histone like domain
AM360_RS05610	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM360_RS05640	SM00344	helix_turn_helix ASNC type
AM360_RS05645	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05650	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05655	SM00938	Nitrogen regulatory protein P-II
AM360_RS05700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS05720	SM00052	Putative diguanylate phosphodiesterase
AM360_RS05725	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05765	SM00354	helix_turn _helix lactose operon repressor
AM360_RS05785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS05795	SM01266	AM360_RS05795
AM360_RS05855	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05865	SM00493	AM360_RS05865
AM360_RS05870	SM00387	Histidine kinase-like ATPases
AM360_RS05920	SM00422	helix_turn_helix, mercury resistance
AM360_RS05930	SM00244	prohibitin homologues
AM360_RS05935	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05955	SM00822	AM360_RS05955
AM360_RS05965	SM00382	ATPases associated with a variety of cellular activities
AM360_RS05980	SM00450	Rhodanese Homology Domain
AM360_RS05990	SM01001	AIR carboxylase
AM360_RS06015	SM00840	AM360_RS06015
AM360_RS06100	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS06275	SM00635	Bacterial Ig-like domain 2
AM360_RS06285	SM01252	AM360_RS06285
AM360_RS06310	SM01040	BRO family, N-terminal domain
AM360_RS06315	SM01040	BRO family, N-terminal domain
AM360_RS06400	SM00095	Transthyretin
AM360_RS06425	SM00421	helix_turn_helix, Lux Regulon
AM360_RS06465	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS06515	SM00354	helix_turn _helix lactose operon repressor
AM360_RS06525	SM00382	ATPases associated with a variety of cellular activities
AM360_RS06540	SM00354	helix_turn _helix lactose operon repressor
AM360_RS06545	SM00640	Glycosyl hydrolases family 32
AM360_RS06580	SM00382	ATPases associated with a variety of cellular activities
AM360_RS06615	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS06635	SM00822	AM360_RS06635
AM360_RS06650	SM00421	helix_turn_helix, Lux Regulon
AM360_RS06755	SM00421	helix_turn_helix, Lux Regulon
AM360_RS06765	SM00354	helix_turn _helix lactose operon repressor
AM360_RS06780	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS06795	SM00382	ATPases associated with a variety of cellular activities
AM360_RS06845	SM00849	Metallo-beta-lactamase superfamily
AM360_RS06850	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS06865	SM00831	Cation transporter/ATPase, N-terminus
AM360_RS06900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS06905	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS06910	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS06925	SM00382	ATPases associated with a variety of cellular activities
AM360_RS06930	SM00822	AM360_RS06930
AM360_RS06945	SM00382	ATPases associated with a variety of cellular activities
AM360_RS06950	SM00382	ATPases associated with a variety of cellular activities
AM360_RS07035	SM00382	ATPases associated with a variety of cellular activities
AM360_RS07070	SM00861	Transketolase, pyrimidine binding domain
AM360_RS07095	SM00923	MbtH-like protein
AM360_RS07100	SM00823	Phosphopantetheine attachment site
AM360_RS07100	SM00824	Thioesterase
AM360_RS07105	SM00382	ATPases associated with a variety of cellular activities
AM360_RS07145	SM00822	AM360_RS07145
AM360_RS07165	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS07175	SM00822	AM360_RS07175
AM360_RS07185	SM00382	ATPases associated with a variety of cellular activities
AM360_RS07230	SM00354	helix_turn _helix lactose operon repressor
AM360_RS07250	SM01007	Class II Aldolase and Adducin N-terminal domain
AM360_RS07280	SM00382	ATPases associated with a variety of cellular activities
AM360_RS07310	SM00470	ParB-like nuclease domain
AM360_RS07365	SM00357	Cold shock protein domain
AM360_RS07385	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS07405	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM360_RS07440	SM00855	Phosphoglycerate mutase family
AM360_RS07470	SM00912	haemagglutination activity domain
AM360_RS07480	SM00382	ATPases associated with a variety of cellular activities
AM360_RS07495	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS07505	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM360_RS07505	SM01091	Transporter associated domain
AM360_RS07520	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS07665	SM00448	cheY-homologous receiver domain
AM360_RS07665	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS07670	SM00387	Histidine kinase-like ATPases
AM360_RS07670	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS07715	SM00796	Allophanate hydrolase subunit 1
AM360_RS07720	SM00797	Allophanate hydrolase subunit 2
AM360_RS07745	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AM360_RS07745	SM01232	AM360_RS07745
AM360_RS07780	SM00861	Transketolase, pyrimidine binding domain
AM360_RS07795	SM00881	CoA binding domain
AM360_RS07925	SM00855	Phosphoglycerate mutase family
AM360_RS07950	SM00382	ATPases associated with a variety of cellular activities
AM360_RS07980	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08010	SM00052	Putative diguanylate phosphodiesterase
AM360_RS08010	SM01034	Sensors of blue-light using FAD
AM360_RS08015	SM00422	helix_turn_helix, mercury resistance
AM360_RS08020	SM00421	helix_turn_helix, Lux Regulon
AM360_RS08060	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS08060	SM00866	AM360_RS08060
AM360_RS08095	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS08095	SM00876	Biotin and Thiamin Synthesis associated domain
AM360_RS08115	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08130	SM00487	DEAD-like helicases superfamily
AM360_RS08130	SM00490	helicase superfamily c-terminal domain
AM360_RS08140	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS08140	SM00387	Histidine kinase-like ATPases
AM360_RS08140	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS08145	SM00448	cheY-homologous receiver domain
AM360_RS08145	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS08165	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS08170	SM00852	Probable molybdopterin binding domain
AM360_RS08200	SM00155	Phospholipase D. Active site motifs.
AM360_RS08225	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08250	SM00822	AM360_RS08250
AM360_RS08260	SM00861	Transketolase, pyrimidine binding domain
AM360_RS08265	SM00487	DEAD-like helicases superfamily
AM360_RS08265	SM00490	helicase superfamily c-terminal domain
AM360_RS08270	SM00487	DEAD-like helicases superfamily
AM360_RS08270	SM00488	AM360_RS08270
AM360_RS08270	SM00491	AM360_RS08270
AM360_RS08295	SM00903	Flavin reductase like domain
AM360_RS08310	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08320	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS08320	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM360_RS08350	SM00529	Helix-turn-helix diphteria tox regulatory element
AM360_RS08365	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS08365	SM00866	AM360_RS08365
AM360_RS08380	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08400	SM00354	helix_turn _helix lactose operon repressor
AM360_RS08430	SM00852	Probable molybdopterin binding domain
AM360_RS08440	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08465	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS08490	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM360_RS08495	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS08495	SM01134	AM360_RS08495
AM360_RS08500	SM00014	Acid phosphatase homologues
AM360_RS08805	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08830	SM00448	cheY-homologous receiver domain
AM360_RS08830	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS08835	SM00387	Histidine kinase-like ATPases
AM360_RS08835	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS08840	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS08840	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM360_RS08855	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS08855	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM360_RS08860	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08875	SM00267	diguanylate cyclase
AM360_RS08880	SM00644	AM360_RS08880
AM360_RS08945	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08955	SM00357	Cold shock protein domain
AM360_RS08965	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08965	SM01086	C-terminal, D2-small domain, of ClpB protein
AM360_RS08970	SM00316	Ribosomal protein S1-like RNA-binding domain
AM360_RS08980	SM00382	ATPases associated with a variety of cellular activities
AM360_RS08985	SM00382	ATPases associated with a variety of cellular activities
AM360_RS09000	SM00344	helix_turn_helix ASNC type
AM360_RS09005	SM00843	AM360_RS09005
AM360_RS09015	SM00382	ATPases associated with a variety of cellular activities
AM360_RS09025	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM360_RS09090	SM00316	Ribosomal protein S1-like RNA-binding domain
AM360_RS09095	SM00411	bacterial (prokaryotic) histone like domain
AM360_RS09100	SM00849	Metallo-beta-lactamase superfamily
AM360_RS09105	SM00382	ATPases associated with a variety of cellular activities
AM360_RS09175	SM00849	Metallo-beta-lactamase superfamily
AM360_RS09195	SM00344	helix_turn_helix ASNC type
AM360_RS09195	SM00419	helix_turn_helix, cAMP Regulatory protein
AM360_RS09230	SM00382	ATPases associated with a variety of cellular activities
AM360_RS09245	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS09270	SM00981	AM360_RS09270
AM360_RS09275	SM00382	ATPases associated with a variety of cellular activities
AM360_RS09355	SM00851	MGS-like domain
AM360_RS09360	SM00881	CoA binding domain
AM360_RS09365	SM00992	Hemimethylated DNA-binding protein YccV like
AM360_RS09370	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AM360_RS09380	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS09410	SM00052	Putative diguanylate phosphodiesterase
AM360_RS09450	SM01329	AM360_RS09450
AM360_RS09470	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS09480	SM01230	AM360_RS09480
AM360_RS09545	SM00903	Flavin reductase like domain
AM360_RS09670	SM00481	DNA polymerase alpha chain like domain
AM360_RS09685	SM00506	Appr-1"-p processing enzyme
AM360_RS09740	SM00450	Rhodanese Homology Domain
AM360_RS09815	SM00316	Ribosomal protein S1-like RNA-binding domain
AM360_RS09820	SM00363	S4 RNA-binding domain
AM360_RS09850	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AM360_RS09855	SM00822	AM360_RS09855
AM360_RS09865	SM00825	Beta-ketoacyl synthase
AM360_RS09960	SM00257	Lysin motif
AM360_RS09965	SM00487	DEAD-like helicases superfamily
AM360_RS09965	SM00490	helicase superfamily c-terminal domain
AM360_RS09965	SM00982	AM360_RS09965
AM360_RS09965	SM01058	CarD-like/TRCF domain
AM360_RS09975	SM00382	ATPases associated with a variety of cellular activities
AM360_RS10025	SM00382	ATPases associated with a variety of cellular activities
AM360_RS10035	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
AM360_RS10040	SM00387	Histidine kinase-like ATPases
AM360_RS10045	SM00448	cheY-homologous receiver domain
AM360_RS10045	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS10050	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS10085	SM01329	AM360_RS10085
AM360_RS10090	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AM360_RS10160	SM00052	Putative diguanylate phosphodiesterase
AM360_RS10175	SM00267	diguanylate cyclase
AM360_RS10175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS10180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM360_RS10185	SM00870	AM360_RS10185
AM360_RS10225	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM360_RS10225	SM00267	diguanylate cyclase
AM360_RS10255	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS10305	SM00822	AM360_RS10305
AM360_RS10340	SM00763	PrkA AAA domain
AM360_RS10360	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM360_RS10375	SM00507	HNH nucleases
AM360_RS10380	SM00636	AM360_RS10380
AM360_RS10385	SM00829	Enoylreductase
AM360_RS10395	SM00829	Enoylreductase
AM360_RS10415	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS10415	SM01134	AM360_RS10415
AM360_RS10430	SM00870	AM360_RS10430
AM360_RS10455	SM00014	Acid phosphatase homologues
AM360_RS10465	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AM360_RS10465	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AM360_RS10465	SM00493	AM360_RS10465
AM360_RS10470	SM00829	Enoylreductase
AM360_RS10475	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AM360_RS10490	SM00450	Rhodanese Homology Domain
AM360_RS10495	SM00382	ATPases associated with a variety of cellular activities
AM360_RS10560	SM00465	GIY-YIG type nucleases (URI domain)
AM360_RS10590	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS10605	SM01060	AM360_RS10605
AM360_RS10670	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
AM360_RS10690	SM00829	Enoylreductase
AM360_RS10695	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS10710	SM01329	AM360_RS10710
AM360_RS10745	SM00481	DNA polymerase alpha chain like domain
AM360_RS10765	SM00363	S4 RNA-binding domain
AM360_RS10775	SM00822	AM360_RS10775
AM360_RS10800	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AM360_RS10800	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AM360_RS10800	SM00493	AM360_RS10800
AM360_RS10830	SM00014	Acid phosphatase homologues
AM360_RS10840	SM00028	Tetratricopeptide repeats
AM360_RS10845	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM360_RS10860	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS10860	SM01134	AM360_RS10860
AM360_RS10870	SM00357	Cold shock protein domain
AM360_RS10870	SM00955	AM360_RS10870
AM360_RS10895	SM00382	ATPases associated with a variety of cellular activities
AM360_RS10900	SM00382	ATPases associated with a variety of cellular activities
AM360_RS10965	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS11130	SM00635	Bacterial Ig-like domain 2
AM360_RS11225	SM00857	Resolvase, N terminal domain
AM360_RS11255	SM00901	AM360_RS11255
AM360_RS11280	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS11285	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS11300	SM00382	ATPases associated with a variety of cellular activities
AM360_RS11345	SM00091	PAS domain
AM360_RS11345	SM00382	ATPases associated with a variety of cellular activities
AM360_RS11360	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM360_RS11430	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM360_RS11475	SM00244	prohibitin homologues
AM360_RS11510	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS11515	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS11525	SM00487	DEAD-like helicases superfamily
AM360_RS11525	SM00490	helicase superfamily c-terminal domain
AM360_RS11530	SM00778	Zinc-binding domain of primase-helicase
AM360_RS11780	SM00382	ATPases associated with a variety of cellular activities
AM360_RS11780	SM01086	C-terminal, D2-small domain, of ClpB protein
AM360_RS11870	SM00822	AM360_RS11870
AM360_RS11880	SM00822	AM360_RS11880
AM360_RS11885	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS11910	SM00849	Metallo-beta-lactamase superfamily
AM360_RS11925	SM00829	Enoylreductase
AM360_RS11940	SM00382	ATPases associated with a variety of cellular activities
AM360_RS11940	SM00930	AM360_RS11940
AM360_RS11960	SM00344	helix_turn_helix ASNC type
AM360_RS11985	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS11985	SM01134	AM360_RS11985
AM360_RS12005	SM00487	DEAD-like helicases superfamily
AM360_RS12005	SM00490	helicase superfamily c-terminal domain
AM360_RS12030	SM00890	Domain of unknown function
AM360_RS12075	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS12090	SM00829	Enoylreductase
AM360_RS12185	SM00382	ATPases associated with a variety of cellular activities
AM360_RS12185	SM00487	DEAD-like helicases superfamily
AM360_RS12185	SM00490	helicase superfamily c-terminal domain
AM360_RS12185	SM00847	Helicase associated domain (HA2)  Add an annotation
AM360_RS12210	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS12225	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AM360_RS12275	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM360_RS12330	SM00354	helix_turn _helix lactose operon repressor
AM360_RS12360	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS12360	SM00387	Histidine kinase-like ATPases
AM360_RS12360	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS12370	SM00448	cheY-homologous receiver domain
AM360_RS12370	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS12405	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AM360_RS12405	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AM360_RS12425	SM00100	Cyclic nucleotide-monophosphate binding domain
AM360_RS12425	SM00419	helix_turn_helix, cAMP Regulatory protein
AM360_RS12465	SM00463	Small MutS-related domain
AM360_RS12470	SM00346	helix_turn_helix isocitrate lyase regulation
AM360_RS12475	SM00882	Coenzyme A transferase
AM360_RS12480	SM00882	Coenzyme A transferase
AM360_RS12490	SM00998	Adenylosuccinate lyase C-terminus
AM360_RS12535	SM00900	AM360_RS12535
AM360_RS12545	SM00448	cheY-homologous receiver domain
AM360_RS12550	SM00387	Histidine kinase-like ATPases
AM360_RS12575	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AM360_RS12745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS12745	SM00895	AM360_RS12745
AM360_RS12765	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS12775	SM00421	helix_turn_helix, Lux Regulon
AM360_RS12795	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS12810	SM01007	Class II Aldolase and Adducin N-terminal domain
AM360_RS12825	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS12825	SM01134	AM360_RS12825
AM360_RS12850	SM01038	Beta galactosidase small chain
AM360_RS12855	SM00354	helix_turn _helix lactose operon repressor
AM360_RS12870	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS12875	SM00450	Rhodanese Homology Domain
AM360_RS12905	SM00382	ATPases associated with a variety of cellular activities
AM360_RS12910	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS12930	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS12935	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS12955	SM00822	AM360_RS12955
AM360_RS12975	SM01130	AM360_RS12975
AM360_RS12995	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS12995	SM01134	AM360_RS12995
AM360_RS13030	SM00267	diguanylate cyclase
AM360_RS13130	SM00382	ATPases associated with a variety of cellular activities
AM360_RS13160	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS13205	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS13265	SM00052	Putative diguanylate phosphodiesterase
AM360_RS13265	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AM360_RS13265	SM00267	diguanylate cyclase
AM360_RS13300	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS13300	SM00866	AM360_RS13300
AM360_RS13350	SM00822	AM360_RS13350
AM360_RS13355	SM00882	Coenzyme A transferase
AM360_RS13385	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS13385	SM01134	AM360_RS13385
AM360_RS13390	SM01133	AM360_RS13390
AM360_RS13400	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS13400	SM01134	AM360_RS13400
AM360_RS13405	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS13425	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS13430	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM360_RS13480	SM00448	cheY-homologous receiver domain
AM360_RS13485	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS13485	SM00387	Histidine kinase-like ATPases
AM360_RS13485	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS13505	SM00257	Lysin motif
AM360_RS13535	SM00354	helix_turn _helix lactose operon repressor
AM360_RS13540	SM00382	ATPases associated with a variety of cellular activities
AM360_RS13570	SM00849	Metallo-beta-lactamase superfamily
AM360_RS13635	SM00354	helix_turn _helix lactose operon repressor
AM360_RS13665	SM01236	AM360_RS13665
AM360_RS13715	SM00382	ATPases associated with a variety of cellular activities
AM360_RS13730	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS13765	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM360_RS13785	SM00825	Beta-ketoacyl synthase
AM360_RS13805	SM01022	AM360_RS13805
AM360_RS13815	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS13840	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS13850	SM00855	Phosphoglycerate mutase family
AM360_RS13865	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS13885	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS13885	SM00895	AM360_RS13885
AM360_RS13900	SM00091	PAS domain
AM360_RS13900	SM00267	diguanylate cyclase
AM360_RS13905	SM00354	helix_turn _helix lactose operon repressor
AM360_RS13930	SM00382	ATPases associated with a variety of cellular activities
AM360_RS13965	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS13965	SM00387	Histidine kinase-like ATPases
AM360_RS13965	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS13970	SM00448	cheY-homologous receiver domain
AM360_RS13970	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS14005	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS14090	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS14135	SM00822	AM360_RS14135
AM360_RS14140	SM00642	Alpha-amylase domain
AM360_RS14190	SM00849	Metallo-beta-lactamase superfamily
AM360_RS14200	SM00919	Malic enzyme, NAD binding domain
AM360_RS14200	SM01274	AM360_RS14200
AM360_RS14210	SM00382	ATPases associated with a variety of cellular activities
AM360_RS14215	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS14225	SM00829	Enoylreductase
AM360_RS14245	SM00382	ATPases associated with a variety of cellular activities
AM360_RS14305	SM00822	AM360_RS14305
AM360_RS14335	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM360_RS14340	SM00346	helix_turn_helix isocitrate lyase regulation
AM360_RS14360	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM360_RS14395	SM00382	ATPases associated with a variety of cellular activities
AM360_RS14400	SM00903	Flavin reductase like domain
AM360_RS14405	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS14435	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS14440	SM00382	ATPases associated with a variety of cellular activities
AM360_RS14455	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS14525	SM00829	Enoylreductase
AM360_RS14530	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS14605	SM00382	ATPases associated with a variety of cellular activities
AM360_RS14615	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS14655	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS14665	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS14705	SM00829	Enoylreductase
AM360_RS14715	SM01150	AM360_RS14715
AM360_RS14735	SM00564	beta-propeller repeat
AM360_RS14740	SM00829	Enoylreductase
AM360_RS14825	SM00900	AM360_RS14825
AM360_RS14835	SM00478	endonuclease III
AM360_RS14835	SM00525	AM360_RS14835
AM360_RS14860	SM00363	S4 RNA-binding domain
AM360_RS14885	SM00267	diguanylate cyclase
AM360_RS14890	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS14940	SM00479	AM360_RS14940
AM360_RS14955	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS14970	SM00354	helix_turn _helix lactose operon repressor
AM360_RS15045	SM00849	Metallo-beta-lactamase superfamily
AM360_RS15065	SM00947	Carbonic anhydrase
AM360_RS15075	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS15075	SM01134	AM360_RS15075
AM360_RS15085	SM01059	Chloramphenicol acetyltransferase
AM360_RS15105	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15110	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15190	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15230	SM00882	Coenzyme A transferase
AM360_RS15235	SM00882	Coenzyme A transferase
AM360_RS15275	SM00822	AM360_RS15275
AM360_RS15310	SM00448	cheY-homologous receiver domain
AM360_RS15310	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS15315	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS15315	SM00387	Histidine kinase-like ATPases
AM360_RS15315	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS15390	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15415	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15440	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM360_RS15475	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15485	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS15485	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM360_RS15510	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15520	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15535	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS15560	SM00450	Rhodanese Homology Domain
AM360_RS15580	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM360_RS15605	SM00346	helix_turn_helix isocitrate lyase regulation
AM360_RS15620	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15690	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15760	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15850	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15890	SM00411	bacterial (prokaryotic) histone like domain
AM360_RS15895	SM00873	B3/4 domain
AM360_RS15895	SM00874	tRNA synthetase B5 domain
AM360_RS15895	SM00896	Ferredoxin-fold anticodon binding domain
AM360_RS15925	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AM360_RS15965	SM00867	YceI-like domain 
AM360_RS15975	SM00155	Phospholipase D. Active site motifs.
AM360_RS15990	SM00382	ATPases associated with a variety of cellular activities
AM360_RS15995	SM00382	ATPases associated with a variety of cellular activities
AM360_RS16035	SM00528	Domain in histone-like proteins of HNS family
AM360_RS16045	SM00448	cheY-homologous receiver domain
AM360_RS16095	SM00344	helix_turn_helix ASNC type
AM360_RS16120	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM360_RS16130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS16130	SM00387	Histidine kinase-like ATPases
AM360_RS16135	SM00421	helix_turn_helix, Lux Regulon
AM360_RS16135	SM00448	cheY-homologous receiver domain
AM360_RS16145	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM360_RS16155	SM00382	ATPases associated with a variety of cellular activities
AM360_RS16170	SM01012	AM360_RS16170
AM360_RS16220	SM00937	AM360_RS16220
AM360_RS16245	SM01400	AM360_RS16245
AM360_RS16255	SM00422	helix_turn_helix, mercury resistance
AM360_RS16520	SM00382	ATPases associated with a variety of cellular activities
AM360_RS16525	SM00382	ATPases associated with a variety of cellular activities
AM360_RS16595	SM00460	Transglutaminase/protease-like homologues
AM360_RS16630	SM01091	Transporter associated domain
AM360_RS16635	SM01005	Alanine racemase, C-terminal domain
AM360_RS16650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS16700	SM00341	Helicase and RNase D C-terminal
AM360_RS16700	SM00474	3'-5' exonuclease
AM360_RS16720	SM00487	DEAD-like helicases superfamily
AM360_RS16720	SM00491	AM360_RS16720
AM360_RS16750	SM00052	Putative diguanylate phosphodiesterase
AM360_RS16755	SM01091	Transporter associated domain
AM360_RS16800	SM00357	Cold shock protein domain
AM360_RS16835	SM00346	helix_turn_helix isocitrate lyase regulation
AM360_RS16850	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM360_RS16850	SM00245	tail specific protease
AM360_RS16855	SM00945	ProQ/FINO family
AM360_RS16860	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM360_RS16925	SM00479	AM360_RS16925
AM360_RS16990	SM00257	Lysin motif
AM360_RS17000	SM00382	ATPases associated with a variety of cellular activities
AM360_RS17010	SM00382	ATPases associated with a variety of cellular activities
AM360_RS17015	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM360_RS17075	SM00836	DALR anticodon binding domain
AM360_RS17075	SM01016	Arginyl tRNA synthetase N terminal dom
AM360_RS17110	SM00382	ATPases associated with a variety of cellular activities
AM360_RS17180	SM01130	AM360_RS17180
AM360_RS17205	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM360_RS17205	SM00465	GIY-YIG type nucleases (URI domain)
AM360_RS17210	SM00421	helix_turn_helix, Lux Regulon
AM360_RS17210	SM00448	cheY-homologous receiver domain
AM360_RS17220	SM00421	helix_turn_helix, Lux Regulon
AM360_RS17225	SM00382	ATPases associated with a variety of cellular activities
AM360_RS17240	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS17240	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM360_RS17245	SM00642	Alpha-amylase domain
AM360_RS17255	SM00421	helix_turn_helix, Lux Regulon
AM360_RS17270	SM00267	diguanylate cyclase
AM360_RS17295	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM360_RS17370	SM00829	Enoylreductase
AM360_RS17475	SM00028	Tetratricopeptide repeats
AM360_RS17515	SM00528	Domain in histone-like proteins of HNS family
AM360_RS17560	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM360_RS17560	SM00267	diguanylate cyclase
AM360_RS17595	SM00052	Putative diguanylate phosphodiesterase
AM360_RS17595	SM00267	diguanylate cyclase
AM360_RS17635	SM00996	S-adenosyl-L-homocysteine hydrolase
AM360_RS17635	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
AM360_RS17660	SM00871	Bacterial transcription activator, effector binding domain
AM360_RS17675	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM360_RS17680	SM00479	AM360_RS17680
AM360_RS17690	SM00838	Elongation factor G C-terminus
AM360_RS17690	SM00889	Elongation factor G, domain IV
AM360_RS17695	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AM360_RS17795	SM00382	ATPases associated with a variety of cellular activities
AM360_RS17840	SM00984	UDP binding domain
AM360_RS17865	SM01350	AM360_RS17865
AM360_RS17895	SM00226	Low molecular weight phosphatase family
AM360_RS17910	SM00014	Acid phosphatase homologues
AM360_RS17920	SM01091	Transporter associated domain
AM360_RS17940	SM00478	endonuclease III
AM360_RS17940	SM01009	AlkA N-terminal domain
AM360_RS17950	SM00387	Histidine kinase-like ATPases
AM360_RS17950	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS17955	SM00448	cheY-homologous receiver domain
AM360_RS17955	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS17960	SM00421	helix_turn_helix, Lux Regulon
AM360_RS17990	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS17990	SM00387	Histidine kinase-like ATPases
AM360_RS17990	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS17995	SM00448	cheY-homologous receiver domain
AM360_RS17995	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS18005	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AM360_RS18010	SM00382	ATPases associated with a variety of cellular activities
AM360_RS18015	SM00382	ATPases associated with a variety of cellular activities
AM360_RS18035	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM360_RS18065	SM00354	helix_turn _helix lactose operon repressor
AM360_RS18085	SM01133	AM360_RS18085
AM360_RS18150	SM00448	cheY-homologous receiver domain
AM360_RS18150	SM00850	LytTr DNA-binding domain
AM360_RS18155	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM360_RS18170	SM00382	ATPases associated with a variety of cellular activities
AM360_RS18185	SM01217	AM360_RS18185
AM360_RS18230	SM01061	CAT RNA binding domain
AM360_RS18275	SM00382	ATPases associated with a variety of cellular activities
AM360_RS18285	SM00354	helix_turn _helix lactose operon repressor
AM360_RS18340	SM00518	AP endonuclease family 2
AM360_RS18380	SM00841	Elongation factor P, C-terminal
AM360_RS18380	SM01185	AM360_RS18380
AM360_RS18395	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AM360_RS18400	SM00014	Acid phosphatase homologues
AM360_RS18410	SM00052	Putative diguanylate phosphodiesterase
AM360_RS18430	SM00382	ATPases associated with a variety of cellular activities
AM360_RS18445	SM00363	S4 RNA-binding domain
AM360_RS18450	SM00487	DEAD-like helicases superfamily
AM360_RS18450	SM00490	helicase superfamily c-terminal domain
AM360_RS18475	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS18475	SM01134	AM360_RS18475
AM360_RS18520	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM360_RS18520	SM00924	MgtE intracellular N domain
AM360_RS18525	SM00382	ATPases associated with a variety of cellular activities
AM360_RS18535	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS18555	SM00421	helix_turn_helix, Lux Regulon
AM360_RS18555	SM00448	cheY-homologous receiver domain
AM360_RS18560	SM00387	Histidine kinase-like ATPases
AM360_RS18560	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS18560	SM00448	cheY-homologous receiver domain
AM360_RS18565	SM00434	DNA Topoisomerase IV
AM360_RS18640	SM00346	helix_turn_helix isocitrate lyase regulation
AM360_RS18645	SM00852	Probable molybdopterin binding domain
AM360_RS18670	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM360_RS18740	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM360_RS18740	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AM360_RS18745	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AM360_RS18785	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM360_RS18840	SM00905	Dihydroneopterin aldolase
AM360_RS18855	SM00382	ATPases associated with a variety of cellular activities
AM360_RS18870	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS18875	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS18920	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM360_RS18940	SM00825	Beta-ketoacyl synthase
AM360_RS18980	SM00463	Small MutS-related domain
AM360_RS19060	SM00387	Histidine kinase-like ATPases
AM360_RS19065	SM00448	cheY-homologous receiver domain
AM360_RS19065	SM00850	LytTr DNA-binding domain
AM360_RS19105	SM00052	Putative diguanylate phosphodiesterase
AM360_RS19105	SM00267	diguanylate cyclase
AM360_RS19170	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM360_RS19170	SM00292	breast cancer carboxy-terminal domain
AM360_RS19170	SM00532	Ligase N family
AM360_RS19175	SM00771	ZipA, C-terminal domain (FtsZ-binding)
AM360_RS19215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS19230	SM00382	ATPases associated with a variety of cellular activities
AM360_RS19275	SM00646	AM360_RS19275
AM360_RS19285	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS19290	SM00877	AM360_RS19290
AM360_RS19295	SM00877	AM360_RS19295
AM360_RS19340	SM00877	AM360_RS19340
AM360_RS19365	SM00877	AM360_RS19365
AM360_RS19370	SM00919	Malic enzyme, NAD binding domain
AM360_RS19370	SM01274	AM360_RS19370
AM360_RS19380	SM00861	Transketolase, pyrimidine binding domain
AM360_RS19450	SM01130	AM360_RS19450
AM360_RS19530	SM00052	Putative diguanylate phosphodiesterase
AM360_RS19530	SM00267	diguanylate cyclase
AM360_RS19565	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM360_RS19565	SM01240	AM360_RS19565
AM360_RS19590	SM00564	beta-propeller repeat
AM360_RS19610	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS19620	SM00562	AM360_RS19620
AM360_RS19630	SM01359	AM360_RS19630
AM360_RS19630	SM01360	AM360_RS19630
AM360_RS19635	SM00450	Rhodanese Homology Domain
AM360_RS19670	SM00271	DnaJ molecular chaperone homology domain
AM360_RS19740	SM00028	Tetratricopeptide repeats
AM360_RS19770	SM00938	Nitrogen regulatory protein P-II
AM360_RS19775	SM00382	ATPases associated with a variety of cellular activities
AM360_RS19775	SM00448	cheY-homologous receiver domain
AM360_RS19785	SM00387	Histidine kinase-like ATPases
AM360_RS19785	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS19790	SM01211	AM360_RS19790
AM360_RS19795	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS19840	SM00358	Double-stranded RNA binding motif
AM360_RS19840	SM00535	Ribonuclease III family
AM360_RS19885	SM00487	DEAD-like helicases superfamily
AM360_RS19885	SM00490	helicase superfamily c-terminal domain
AM360_RS19895	SM00986	Uracil DNA glycosylase superfamily
AM360_RS19895	SM00987	UreE urease accessory protein, C-terminal domain 
AM360_RS19900	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AM360_RS19915	SM01144	AM360_RS19915
AM360_RS19920	SM00881	CoA binding domain
AM360_RS19925	SM00155	Phospholipase D. Active site motifs.
AM360_RS19960	SM00382	ATPases associated with a variety of cellular activities
AM360_RS19960	SM01086	C-terminal, D2-small domain, of ClpB protein
AM360_RS19970	SM00363	S4 RNA-binding domain
AM360_RS19990	SM00830	Chorismate mutase type II
AM360_RS20000	SM00830	Chorismate mutase type II
AM360_RS20015	SM00267	diguanylate cyclase
AM360_RS20055	SM00382	ATPases associated with a variety of cellular activities
AM360_RS20055	SM00962	SRP54-type protein, GTPase domain
AM360_RS20055	SM00963	SRP54-type protein, helical bundle domain
AM360_RS20065	SM01091	Transporter associated domain
AM360_RS20365	SM00903	Flavin reductase like domain
AM360_RS20370	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS20410	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS20415	SM00382	ATPases associated with a variety of cellular activities
AM360_RS20420	SM01007	Class II Aldolase and Adducin N-terminal domain
AM360_RS20440	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS20445	SM00421	helix_turn_helix, Lux Regulon
AM360_RS20495	SM00382	ATPases associated with a variety of cellular activities
AM360_RS20510	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AM360_RS20515	SM00450	Rhodanese Homology Domain
AM360_RS20530	SM00528	Domain in histone-like proteins of HNS family
AM360_RS20560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS20590	SM00382	ATPases associated with a variety of cellular activities
AM360_RS20615	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS20630	SM00917	LeuA allosteric (dimerisation) domain
AM360_RS20635	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS20660	SM00749	bacterial OsmY and nodulation domain
AM360_RS20700	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AM360_RS20710	SM00382	ATPases associated with a variety of cellular activities
AM360_RS20730	SM00382	ATPases associated with a variety of cellular activities
AM360_RS20770	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS20770	SM01134	AM360_RS20770
AM360_RS20775	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM360_RS20780	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM360_RS20780	SM00382	ATPases associated with a variety of cellular activities
AM360_RS20790	SM00849	Metallo-beta-lactamase superfamily
AM360_RS20815	SM00354	helix_turn _helix lactose operon repressor
AM360_RS20960	SM00354	helix_turn _helix lactose operon repressor
AM360_RS20970	SM00382	ATPases associated with a variety of cellular activities
AM360_RS21030	SM00382	ATPases associated with a variety of cellular activities
AM360_RS21050	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AM360_RS21050	SM00534	ATPase domain of DNA mismatch repair MUTS family
AM360_RS21075	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS21100	SM00257	Lysin motif
AM360_RS21195	SM01192	AM360_RS21195
AM360_RS21195	SM01193	AM360_RS21195
AM360_RS21210	SM00954	Region found in RelA / SpoT proteins
AM360_RS21220	SM00073	Histidine Phosphotransfer domain
AM360_RS21220	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS21220	SM00387	Histidine kinase-like ATPases
AM360_RS21220	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS21220	SM00448	cheY-homologous receiver domain
AM360_RS21230	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM360_RS21235	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM360_RS21285	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS21315	SM00382	ATPases associated with a variety of cellular activities
AM360_RS21335	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS21335	SM00382	ATPases associated with a variety of cellular activities
AM360_RS21340	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AM360_RS21340	SM00475	5'-3' exonuclease
AM360_RS21350	SM01007	Class II Aldolase and Adducin N-terminal domain
AM360_RS21375	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS21375	SM01134	AM360_RS21375
AM360_RS21415	SM00925	MltA specific insert domain
AM360_RS21450	SM00382	ATPases associated with a variety of cellular activities
AM360_RS21530	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS21540	SM00877	AM360_RS21540
AM360_RS21545	SM00877	AM360_RS21545
AM360_RS21575	SM00877	AM360_RS21575
AM360_RS21580	SM00877	AM360_RS21580
AM360_RS21620	SM00877	AM360_RS21620
AM360_RS21625	SM00877	AM360_RS21625
AM360_RS21650	SM00646	AM360_RS21650
AM360_RS21665	SM00382	ATPases associated with a variety of cellular activities
AM360_RS21715	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM360_RS21725	SM00927	DNA mismatch repair enzyme MutH
AM360_RS21750	SM00563	Phosphate acyltransferases
AM360_RS21765	SM00354	helix_turn _helix lactose operon repressor
AM360_RS21775	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS21775	SM00895	AM360_RS21775
AM360_RS21790	SM00354	helix_turn _helix lactose operon repressor
AM360_RS21825	SM00382	ATPases associated with a variety of cellular activities
AM360_RS21840	SM00640	Glycosyl hydrolases family 32
AM360_RS21850	SM00354	helix_turn _helix lactose operon repressor
AM360_RS21905	SM00421	helix_turn_helix, Lux Regulon
AM360_RS21910	SM00052	Putative diguanylate phosphodiesterase
AM360_RS21950	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM360_RS22015	SM00052	Putative diguanylate phosphodiesterase
AM360_RS22070	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AM360_RS22125	SM00257	Lysin motif
AM360_RS22190	SM01022	AM360_RS22190
AM360_RS22255	SM01011	Aminopeptidase P, N-terminal domain
AM360_RS22320	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM360_RS22325	SM00861	Transketolase, pyrimidine binding domain
AM360_RS22385	SM00346	helix_turn_helix isocitrate lyase regulation
AM360_RS22455	SM00731	SprT homologues.
AM360_RS22480	SM00732	Likely ribonuclease with RNase H fold.
AM360_RS22485	SM00421	helix_turn_helix, Lux Regulon
AM360_RS22490	SM00382	ATPases associated with a variety of cellular activities
AM360_RS22505	SM01152	AM360_RS22505
AM360_RS22515	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS22535	SM00478	endonuclease III
AM360_RS22535	SM00525	AM360_RS22535
AM360_RS22630	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS22640	SM00357	Cold shock protein domain
AM360_RS22645	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS22865	SM00382	ATPases associated with a variety of cellular activities
AM360_RS22905	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM360_RS23005	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS23025	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS23035	SM00563	Phosphate acyltransferases
AM360_RS23040	SM00434	DNA Topoisomerase IV
AM360_RS23045	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS23045	SM00871	Bacterial transcription activator, effector binding domain
AM360_RS23055	SM00448	cheY-homologous receiver domain
AM360_RS23055	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS23060	SM00387	Histidine kinase-like ATPases
AM360_RS23060	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS23075	SM00387	Histidine kinase-like ATPases
AM360_RS23075	SM00433	TopoisomeraseII
AM360_RS23150	SM01118	AM360_RS23150
AM360_RS23155	SM00287	Bacterial SH3 domain homologues
AM360_RS23170	SM00905	Dihydroneopterin aldolase
AM360_RS23175	SM01207	AM360_RS23175
AM360_RS23205	SM00988	UreE urease accessory protein, N-terminal domain
AM360_RS23240	SM00400	zinc finger
AM360_RS23240	SM00493	AM360_RS23240
AM360_RS23240	SM00766	DNA primase DnaG DnaB-binding
AM360_RS23250	SM00986	Uracil DNA glycosylase superfamily
AM360_RS23250	SM00987	UreE urease accessory protein, C-terminal domain 
AM360_RS23270	SM00421	helix_turn_helix, Lux Regulon
AM360_RS23270	SM00448	cheY-homologous receiver domain
AM360_RS23275	SM00062	Bacterial periplasmic substrate-binding proteins
AM360_RS23275	SM00073	Histidine Phosphotransfer domain
AM360_RS23275	SM00387	Histidine kinase-like ATPases
AM360_RS23275	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS23275	SM00448	cheY-homologous receiver domain
AM360_RS23340	SM00091	PAS domain
AM360_RS23340	SM00382	ATPases associated with a variety of cellular activities
AM360_RS23370	SM01120	AM360_RS23370
AM360_RS23380	SM01120	AM360_RS23380
AM360_RS23410	SM01133	AM360_RS23410
AM360_RS23430	SM00382	ATPases associated with a variety of cellular activities
AM360_RS23455	SM00873	B3/4 domain
AM360_RS23460	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS23490	SM00858	AM360_RS23490
AM360_RS23505	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS23505	SM00895	AM360_RS23505
AM360_RS23600	SM00858	AM360_RS23600
AM360_RS23610	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS23610	SM01134	AM360_RS23610
AM360_RS23655	SM00829	Enoylreductase
AM360_RS23660	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS23660	SM01134	AM360_RS23660
AM360_RS23690	SM00749	bacterial OsmY and nodulation domain
AM360_RS23700	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM360_RS23750	SM00487	DEAD-like helicases superfamily
AM360_RS23750	SM00490	helicase superfamily c-terminal domain
AM360_RS23760	SM00028	Tetratricopeptide repeats
AM360_RS23765	SM00316	Ribosomal protein S1-like RNA-binding domain
AM360_RS23765	SM00322	K homology RNA-binding domain
AM360_RS23775	SM01387	AM360_RS23775
AM360_RS23795	SM00316	Ribosomal protein S1-like RNA-binding domain
AM360_RS23850	SM00382	ATPases associated with a variety of cellular activities
AM360_RS23865	SM01103	AM360_RS23865
AM360_RS23940	SM00382	ATPases associated with a variety of cellular activities
AM360_RS23975	SM00382	ATPases associated with a variety of cellular activities
AM360_RS24015	SM00073	Histidine Phosphotransfer domain
AM360_RS24015	SM00091	PAS domain
AM360_RS24015	SM00387	Histidine kinase-like ATPases
AM360_RS24015	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS24015	SM00448	cheY-homologous receiver domain
AM360_RS24025	SM00829	Enoylreductase
AM360_RS24035	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS24095	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM360_RS24100	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM360_RS24160	SM00316	Ribosomal protein S1-like RNA-binding domain
AM360_RS24190	SM00052	Putative diguanylate phosphodiesterase
AM360_RS24190	SM00267	diguanylate cyclase
AM360_RS24225	SM00878	Biotin carboxylase C-terminal domain
AM360_RS24280	SM00507	HNH nucleases
AM360_RS24485	SM00422	helix_turn_helix, mercury resistance
AM360_RS24500	SM00662	RNA polymerases D
AM360_RS24505	SM00363	S4 RNA-binding domain
AM360_RS24505	SM01390	AM360_RS24505
AM360_RS24570	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AM360_RS24575	SM01374	AM360_RS24575
AM360_RS24595	SM00322	K homology RNA-binding domain
AM360_RS24610	SM01382	AM360_RS24610
AM360_RS24610	SM01383	AM360_RS24610
AM360_RS24630	SM01403	AM360_RS24630
AM360_RS24660	SM00838	Elongation factor G C-terminus
AM360_RS24660	SM00889	Elongation factor G, domain IV
AM360_RS24725	SM00382	ATPases associated with a variety of cellular activities
AM360_RS24760	SM00100	Cyclic nucleotide-monophosphate binding domain
AM360_RS24760	SM00419	helix_turn_helix, cAMP Regulatory protein
AM360_RS24905	SM00363	S4 RNA-binding domain
AM360_RS24920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS24920	SM00387	Histidine kinase-like ATPases
AM360_RS24920	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS24925	SM00448	cheY-homologous receiver domain
AM360_RS24925	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS24935	SM00316	Ribosomal protein S1-like RNA-binding domain
AM360_RS24935	SM00732	Likely ribonuclease with RNase H fold.
AM360_RS24940	SM00899	AM360_RS24940
AM360_RS24995	SM00421	helix_turn_helix, Lux Regulon
AM360_RS25000	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM360_RS25000	SM01134	AM360_RS25000
AM360_RS25010	SM00450	Rhodanese Homology Domain
AM360_RS25020	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS25045	SM00642	Alpha-amylase domain
AM360_RS25050	SM00642	Alpha-amylase domain
AM360_RS25055	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM360_RS25075	SM00354	helix_turn _helix lactose operon repressor
AM360_RS25120	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25150	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25155	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25195	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS25210	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25215	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25215	SM00962	SRP54-type protein, GTPase domain
AM360_RS25215	SM00963	SRP54-type protein, helical bundle domain
AM360_RS25330	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25335	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25385	SM00014	Acid phosphatase homologues
AM360_RS25420	SM00822	AM360_RS25420
AM360_RS25465	SM00052	Putative diguanylate phosphodiesterase
AM360_RS25465	SM00267	diguanylate cyclase
AM360_RS25465	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS25470	SM00028	Tetratricopeptide repeats
AM360_RS25525	SM00028	Tetratricopeptide repeats
AM360_RS25555	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25560	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25600	SM00248	ankyrin repeats
AM360_RS25640	SM00354	helix_turn _helix lactose operon repressor
AM360_RS25675	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS25680	SM00357	Cold shock protein domain
AM360_RS25685	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25750	SM00382	ATPases associated with a variety of cellular activities
AM360_RS25760	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS25765	SM00047	Lysozyme subfamily 2
AM360_RS25775	SM00642	Alpha-amylase domain
AM360_RS25850	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS25850	SM00895	AM360_RS25850
AM360_RS25865	SM00971	Serine acetyltransferase, N-terminal
AM360_RS25885	SM00450	Rhodanese Homology Domain
AM360_RS25910	SM00829	Enoylreductase
AM360_RS25990	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AM360_RS25990	SM01232	AM360_RS25990
AM360_RS26040	SM00382	ATPases associated with a variety of cellular activities
AM360_RS26070	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS26085	SM00532	Ligase N family
AM360_RS26090	SM00072	Guanylate kinase homologues.
AM360_RS26095	SM01409	AM360_RS26095
AM360_RS26100	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM360_RS26100	SM00954	Region found in RelA / SpoT proteins
AM360_RS26110	SM00487	DEAD-like helicases superfamily
AM360_RS26110	SM00490	helicase superfamily c-terminal domain
AM360_RS26225	SM00829	Enoylreductase
AM360_RS26240	SM00829	Enoylreductase
AM360_RS26245	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS26250	SM00849	Metallo-beta-lactamase superfamily
AM360_RS26270	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS26395	SM00354	helix_turn _helix lactose operon repressor
AM360_RS26430	SM00382	ATPases associated with a variety of cellular activities
AM360_RS26440	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS26440	SM00866	AM360_RS26440
AM360_RS26470	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS26490	SM00387	Histidine kinase-like ATPases
AM360_RS26495	SM00421	helix_turn_helix, Lux Regulon
AM360_RS26495	SM00448	cheY-homologous receiver domain
AM360_RS26575	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS26575	SM00866	AM360_RS26575
AM360_RS26615	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM360_RS26630	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS26630	SM00895	AM360_RS26630
AM360_RS26650	SM00387	Histidine kinase-like ATPases
AM360_RS26650	SM00433	TopoisomeraseII
AM360_RS26660	SM00480	DNA polymerase III beta subunit
AM360_RS26665	SM00382	ATPases associated with a variety of cellular activities
AM360_RS26665	SM00760	Bacterial dnaA protein helix-turn-helix domain
AM360_RS26685	SM01234	AM360_RS26685
AM360_RS26765	SM00382	ATPases associated with a variety of cellular activities
AM360_RS26800	SM00382	ATPases associated with a variety of cellular activities
AM360_RS26845	SM01228	AM360_RS26845
AM360_RS26855	SM00344	helix_turn_helix ASNC type
AM360_RS26865	SM00327	von Willebrand factor (vWF) type A domain
AM360_RS26870	SM00382	ATPases associated with a variety of cellular activities
AM360_RS26885	SM00382	ATPases associated with a variety of cellular activities
AM360_RS26905	SM00354	helix_turn _helix lactose operon repressor
AM360_RS26915	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM360_RS26915	SM00895	AM360_RS26915
AM360_RS26970	SM00563	Phosphate acyltransferases
AM360_RS26975	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AM360_RS26975	SM00474	3'-5' exonuclease
AM360_RS26975	SM00475	5'-3' exonuclease
AM360_RS26975	SM00482	DNA polymerase A domain
AM360_RS26995	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM360_RS27005	SM00382	ATPases associated with a variety of cellular activities
AM360_RS27005	SM00448	cheY-homologous receiver domain
AM360_RS27010	SM00091	PAS domain
AM360_RS27010	SM00387	Histidine kinase-like ATPases
AM360_RS27010	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS27015	SM01230	AM360_RS27015
AM360_RS27145	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS27150	SM00354	helix_turn _helix lactose operon repressor
AM360_RS27185	SM00382	ATPases associated with a variety of cellular activities
AM360_RS27195	SM01007	Class II Aldolase and Adducin N-terminal domain
AM360_RS27215	SM00342	helix_turn_helix, arabinose operon control protein
AM360_RS27235	SM00829	Enoylreductase
AM360_RS27245	SM00354	helix_turn _helix lactose operon repressor
AM360_RS27250	SM01038	Beta galactosidase small chain
AM360_RS27275	SM00487	DEAD-like helicases superfamily
AM360_RS27275	SM00490	helicase superfamily c-terminal domain
AM360_RS27340	SM00945	ProQ/FINO family
AM360_RS27565	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS27570	SM00530	Helix-turn-helix XRE-family like proteins 
AM360_RS27650	SM00470	ParB-like nuclease domain
AM360_RS27770	SM00470	ParB-like nuclease domain
AM360_RS27795	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM360_RS27795	SM00267	diguanylate cyclase
AM360_RS27800	SM00052	Putative diguanylate phosphodiesterase
AM360_RS27815	SM00052	Putative diguanylate phosphodiesterase
AM360_RS27860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS27860	SM00387	Histidine kinase-like ATPases
AM360_RS27860	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS27865	SM00448	cheY-homologous receiver domain
AM360_RS27865	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS27895	SM00746	metallochaperone-like domain
AM360_RS27935	SM00448	cheY-homologous receiver domain
AM360_RS27935	SM00862	Transcriptional regulatory protein, C terminal
AM360_RS27940	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM360_RS27940	SM00387	Histidine kinase-like ATPases
AM360_RS27940	SM00388	His Kinase A (phosphoacceptor) domain
AM360_RS27970	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AM360_RS28020	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AM360_RS28100	SM00382	ATPases associated with a variety of cellular activities
AM360_RS28100	SM01086	C-terminal, D2-small domain, of ClpB protein
AM360_RS28165	SM00382	ATPases associated with a variety of cellular activities
AM360_RS28295	SM00857	Resolvase, N terminal domain
AM360_RS28310	SM01059	Chloramphenicol acetyltransferase
AM360_RS28375	SM00382	ATPases associated with a variety of cellular activities
AM360_RS28400	SM01012	AM360_RS28400
AM360_RS28430	SM00965	Secretin and TonB N terminus short domain
AM360_RS28450	SM00382	ATPases associated with a variety of cellular activities
AM360_RS28520	SM00470	ParB-like nuclease domain
AM360_RS28770	SM00945	ProQ/FINO family
AM360_RS28800	SM00155	Phospholipase D. Active site motifs.
AM360_RS28865	SM00952	AM360_RS28865
AM360_RS28880	SM00857	Resolvase, N terminal domain
AM360_RS29055	SM00857	Resolvase, N terminal domain
AM360_RS29075	SM00829	Enoylreductase
AM360_RS29090	SM00857	Resolvase, N terminal domain
AM360_RS29135	SM00857	Resolvase, N terminal domain
AM360_RS29310	SM00382	ATPases associated with a variety of cellular activities
AM360_RS29335	SM00857	Resolvase, N terminal domain
AM360_RS29345	SM00244	prohibitin homologues
AM360_RS29385	SM00945	ProQ/FINO family
AM360_RS29410	SM00271	DnaJ molecular chaperone homology domain
AM360_RS29550	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AM360_RS29550	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AM360_RS29550	SM00493	AM360_RS29550
AM360_RS29570	SM00318	Staphylococcal nuclease homologues
AM360_RS29660	SM00857	Resolvase, N terminal domain
AM360_RS29715	SM00966	SpoVT / AbrB like domain 
AM360_RS29760	SM00470	ParB-like nuclease domain
AM360_RS29825	SM00857	Resolvase, N terminal domain
AM360_RS30030	SM00857	Resolvase, N terminal domain
AM360_RS30055	SM00382	ATPases associated with a variety of cellular activities
