locus-tag	class	description
BKY56_RS00005	COG0716	FMN binding
BKY56_RS00010	COG1522	sequence-specific DNA binding
BKY56_RS00040	COG1129	ABC transporter
BKY56_RS00045	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS00055	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BKY56_RS00060	COG1609	Transcriptional regulator
BKY56_RS00065	COG0477	Major facilitator Superfamily
BKY56_RS00070	COG2186	Transcriptional regulator
BKY56_RS00100	COG1763	Mo-molybdopterin cofactor biosynthetic process
BKY56_RS00110	COG3084	Protein conserved in bacteria
BKY56_RS00115	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BKY56_RS00125	COG0204	Acyl-transferase
BKY56_RS00155	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BKY56_RS00165	COG3852	Histidine kinase
BKY56_RS00185	COG1011	Hydrolase
BKY56_RS00200	COG0456	acetyltransferase
BKY56_RS00210	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
BKY56_RS00225	COG2864	formate dehydrogenase
BKY56_RS00230	COG0437	4 iron, 4 sulfur cluster binding
BKY56_RS00255	COG0205	6-phosphofructokinase activity
BKY56_RS00315	COG2211	Major facilitator Superfamily
BKY56_RS00325	COG1454	alcohol dehydrogenase
BKY56_RS00330	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS00335	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS00340	COG1129	ABC transporter
BKY56_RS00385	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BKY56_RS00390	COG2258	MOSC domain
BKY56_RS00395	COG2205	protein histidine kinase activity
BKY56_RS00400	COG0745	RESPONSE REGULATOR receiver
BKY56_RS00405	COG3678	ATP-independent chaperone mediated protein folding
BKY56_RS00425	COG1575	Belongs to the MenA family. Type 1 subfamily
BKY56_RS00440	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BKY56_RS00445	COG1609	Transcriptional regulator
BKY56_RS00450	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BKY56_RS00465	COG0626	cystathionine gamma-synthase activity
BKY56_RS00470	COG0527	aspartate kinase activity
BKY56_RS00470	COG0460	homoserine dehydrogenase
BKY56_RS00480	COG0737	Belongs to the 5'-nucleotidase family
BKY56_RS00490	COG0583	DNA-binding transcription factor activity
BKY56_RS00500	COG0697	spore germination
BKY56_RS00505	COG0371	Dehydrogenase
BKY56_RS00515	COG2207	Transcriptional regulator
BKY56_RS00520	COG3443	Belongs to the bacterial solute-binding protein 9 family
BKY56_RS00535	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BKY56_RS00560	COG0583	DNA-binding transcription factor activity
BKY56_RS00635	COG3085	chromosome segregation
BKY56_RS00655	COG3978	acetolactate synthase activity
BKY56_RS00670	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BKY56_RS00675	COG0583	DNA-binding transcription factor activity
BKY56_RS00685	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BKY56_RS00690	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BKY56_RS00700	COG1811	Na channel or pump
BKY56_RS00730	COG3118	belongs to the thioredoxin family
BKY56_RS00740	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BKY56_RS00745	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BKY56_RS00755	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BKY56_RS00760	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BKY56_RS00765	COG1088	dTDP-glucose 4,6-dehydratase activity
BKY56_RS00770	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BKY56_RS00775	COG0456	acetyltransferase
BKY56_RS00780	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BKY56_RS00785	COG2244	polysaccharide biosynthetic process
BKY56_RS00830	COG3071	HemY protein
BKY56_RS00835	COG2959	enzyme of heme biosynthesis
BKY56_RS00850	COG3072	Adenylate cyclase
BKY56_RS00880	COG1011	Hydrolase
BKY56_RS00885	COG0210	DNA helicase
BKY56_RS00920	COG1280	lysine exporter protein (LysE YggA)
BKY56_RS00930	COG1280	lysine exporter protein (LysE YggA)
BKY56_RS00935	COG2267	carboxylic ester hydrolase activity
BKY56_RS00940	COG0561	phosphatase activity
BKY56_RS00945	COG0697	spore germination
BKY56_RS00950	COG0583	DNA-binding transcription factor activity
BKY56_RS00980	COG3165	ubiquinone biosynthetic process from chorismate
BKY56_RS01000	COG0805	protein transport
BKY56_RS01045	COG1739	Uncharacterized protein family UPF0029
BKY56_RS01055	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
BKY56_RS01140	COG0250	Participates in transcription elongation, termination and antitermination
BKY56_RS01180	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
BKY56_RS01185	COG1447	Phosphotransferase system cellobiose-specific component IIA
BKY56_RS01195	COG3706	GGDEF domain
BKY56_RS01215	COG2104	thiamine diphosphate biosynthetic process
BKY56_RS01220	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BKY56_RS01235	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
BKY56_RS01270	COG3678	ATP-independent chaperone mediated protein folding
BKY56_RS01275	COG4191	Histidine kinase
BKY56_RS01285	COG0151	Belongs to the GarS family
BKY56_RS01330	COG0456	acetyltransferase
BKY56_RS01340	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BKY56_RS01390	COG0527	aspartate kinase activity
BKY56_RS01405	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BKY56_RS01415	COG0251	oxidation-reduction process
BKY56_RS01490	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BKY56_RS01500	COG0534	Mate efflux family protein
BKY56_RS01505	COG3237	CsbD-like
BKY56_RS01510	COG0735	belongs to the Fur family
BKY56_RS01520	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BKY56_RS01535	COG0305	Participates in initiation and elongation during chromosome replication
BKY56_RS01540	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BKY56_RS01555	COG0432	Pfam Uncharacterised protein family UPF0047
BKY56_RS01560	COG2315	Protein conserved in bacteria
BKY56_RS01580	COG0741	lytic transglycosylase activity
BKY56_RS01585	COG4771	TonB-dependent receptor
BKY56_RS01605	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BKY56_RS01620	COG0483	inositol monophosphate 1-phosphatase activity
BKY56_RS01625	COG1609	Transcriptional regulator
BKY56_RS01630	COG1234	tRNA 3'-trailer cleavage
BKY56_RS01665	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BKY56_RS01675	COG0789	Transcriptional regulator
BKY56_RS01680	COG0625	glutathione transferase activity
BKY56_RS01685	COG2252	PERMEase
BKY56_RS01690	COG0025	NhaP-type Na H and K H
BKY56_RS01695	COG0583	DNA-binding transcription factor activity
BKY56_RS01700	COG1380	Effector of murein hydrolase LrgA
BKY56_RS01705	COG1346	cytolysis
BKY56_RS01710	COG3539	Fimbrial protein
BKY56_RS01740	COG3162	membrane
BKY56_RS01750	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BKY56_RS01760	COG1301	dicarboxylic acid transport
BKY56_RS01765	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
BKY56_RS01800	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS01805	COG1129	ABC transporter
BKY56_RS01810	COG4191	Histidine kinase
BKY56_RS01810	COG0784	Response regulator, receiver
BKY56_RS01820	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BKY56_RS01830	COG3454	Phosphonate metabolism
BKY56_RS01835	COG4778	phosphonate C-P lyase system protein PhnL
BKY56_RS01840	COG4107	phosphonate C-P lyase system protein PhnK
BKY56_RS01845	COG3627	carbon phosphorus lyase activity
BKY56_RS01850	COG3626	phosphonate metabolism
BKY56_RS01855	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
BKY56_RS01860	COG3624	Phosphonate C-P lyase system protein PhnG
BKY56_RS01865	COG2188	Transcriptional regulator
BKY56_RS01870	COG2764	glyoxalase bleomycin resistance protein dioxygenase
BKY56_RS01875	COG2824	Alkylphosphonate utilization operon protein PhnA
BKY56_RS01890	COG2169	Transcriptional regulator
BKY56_RS01900	COG1486	melibiose metabolic process
BKY56_RS01930	COG0861	Integral membrane protein TerC family
BKY56_RS01950	COG1215	transferase activity, transferring glycosyl groups
BKY56_RS01955	COG1649	PFAM Uncharacterised BCR, COG1649
BKY56_RS01955	COG0726	polysaccharide deacetylase
BKY56_RS01960	COG0457	Tetratricopeptide repeat
BKY56_RS02010	COG1309	transcriptional regulator
BKY56_RS02025	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
BKY56_RS02030	COG1027	Aspartate ammonia-lyase
BKY56_RS02040	COG3030	protein affecting phage T7 exclusion by the F plasmid
BKY56_RS02045	COG0531	amino acid
BKY56_RS02110	COG1509	lysine 2,3-aminomutase activity
BKY56_RS02125	COG5510	response to toxic substance
BKY56_RS02130	COG2076	Multidrug Resistance protein
BKY56_RS02150	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BKY56_RS02155	COG1053	succinate dehydrogenase
BKY56_RS02170	COG3264	Mechanosensitive ion channel
BKY56_RS02170	COG1511	domain protein
BKY56_RS02195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS02220	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BKY56_RS02225	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BKY56_RS02225	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BKY56_RS02230	COG0802	atpase or kinase
BKY56_RS02235	COG0860	N-Acetylmuramoyl-L-alanine amidase
BKY56_RS02255	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BKY56_RS02260	COG0330	HflC and HflK could
BKY56_RS02265	COG0330	HflC and HflK could
BKY56_RS02275	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
BKY56_RS02290	COG0557	exoribonuclease II activity
BKY56_RS02295	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BKY56_RS02300	COG1960	acyl-CoA dehydrogenase activity
BKY56_RS02310	COG3650	response to hydrogen peroxide
BKY56_RS02315	COG1073	alpha beta
BKY56_RS02375	COG2965	DNA replication, synthesis of RNA primer
BKY56_RS02380	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BKY56_RS02390	COG3061	Opacity-associated protein A
BKY56_RS02395	COG0545	Peptidyl-prolyl cis-trans isomerase
BKY56_RS02400	COG1113	amino acid transport
BKY56_RS02410	COG0697	spore germination
BKY56_RS02420	COG0702	epimerase
BKY56_RS02425	COG1733	regulation of RNA biosynthetic process
BKY56_RS02440	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
BKY56_RS02455	COG1253	flavin adenine dinucleotide binding
BKY56_RS02465	COG0729	surface antigen
BKY56_RS02470	COG2911	Protein conserved in bacteria
BKY56_RS02475	COG2105	PFAM AIG2 family protein
BKY56_RS02495	COG1879	ABC-type sugar transport system periplasmic component
BKY56_RS02500	COG1129	ABC transporter
BKY56_RS02505	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS02510	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS02520	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BKY56_RS02540	COG0312	modulator of DNA gyrase
BKY56_RS02575	COG3964	amidohydrolase
BKY56_RS02590	COG2706	6-phosphogluconolactonase activity
BKY56_RS02595	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS02595	COG3711	transcriptional antiterminator
BKY56_RS02600	COG3077	Addiction module antitoxin, RelB DinJ family
BKY56_RS02605	COG2026	Addiction module toxin, RelE StbE family
BKY56_RS02610	COG0602	queuosine metabolic process
BKY56_RS02630	COG1486	melibiose metabolic process
BKY56_RS02635	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS02640	COG0366	Alpha amylase catalytic
BKY56_RS02645	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS02645	COG1263	PTS System
BKY56_RS02685	COG2731	YhcH YjgK YiaL family protein
BKY56_RS02690	COG2222	sugar isomerase
BKY56_RS02695	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BKY56_RS02700	COG1228	amidohydrolase
BKY56_RS02705	COG1288	antiporter activity
BKY56_RS02710	COG2188	Transcriptional regulator
BKY56_RS02735	COG0525	valine-tRNA ligase activity
BKY56_RS02740	COG2927	DNA polymerase III (CHI subunit)
BKY56_RS02755	COG0795	lipopolysaccharide-transporting ATPase activity
BKY56_RS02760	COG0795	lipopolysaccharide-transporting ATPase activity
BKY56_RS02765	COG0433	COG0433 Predicted ATPase
BKY56_RS02780	COG3718	enzyme involved in inositol metabolism
BKY56_RS02795	COG0837	glucose binding
BKY56_RS02795	COG1737	Transcriptional regulator
BKY56_RS02800	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BKY56_RS02805	COG3962	Belongs to the TPP enzyme family
BKY56_RS02815	COG1082	Xylose isomerase domain protein TIM barrel
BKY56_RS02830	COG3842	ATPase activity
BKY56_RS02835	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BKY56_RS02840	COG0395	ABC-type sugar transport system, permease component
BKY56_RS02845	COG1175	transmembrane transport
BKY56_RS02850	COG1064	alcohol dehydrogenase
BKY56_RS02855	COG0659	secondary active sulfate transmembrane transporter activity
BKY56_RS02860	COG0288	reversible hydration of carbon dioxide
BKY56_RS02875	COG0582	viral genome integration into host DNA
BKY56_RS02880	COG0515	serine threonine protein kinase
BKY56_RS02880	COG2815	serine threonine protein kinase
BKY56_RS02935	COG1401	restriction endodeoxyribonuclease activity
BKY56_RS03025	COG3507	Belongs to the glycosyl hydrolase 43 family
BKY56_RS03030	COG2211	Major facilitator Superfamily
BKY56_RS03035	COG2115	Belongs to the xylose isomerase family
BKY56_RS03040	COG4580	involved in the transport of maltose and maltodextrins
BKY56_RS03045	COG3272	Protein of unknown function (DUF1722)
BKY56_RS03065	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BKY56_RS03080	COG0300	oxidoreductase activity
BKY56_RS03095	COG0789	Transcriptional regulator
BKY56_RS03100	COG3040	lipid binding
BKY56_RS03110	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BKY56_RS03115	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS03120	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS03125	COG1538	Outer membrane efflux protein
BKY56_RS03130	COG0745	RESPONSE REGULATOR receiver
BKY56_RS03135	COG5002	protein histidine kinase activity
BKY56_RS03150	COG2850	peptidyl-arginine hydroxylation
BKY56_RS03190	COG0842	Transport permease protein
BKY56_RS03195	COG1129	ABC transporter
BKY56_RS03195	COG0842	Transport permease protein
BKY56_RS03200	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS03225	COG4869	propanediol catabolic process
BKY56_RS03235	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BKY56_RS03240	COG1882	Formate acetyltransferase
BKY56_RS03255	COG1454	alcohol dehydrogenase
BKY56_RS03255	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS03290	COG2249	NAD(P)H dehydrogenase (quinone) activity
BKY56_RS03295	COG0583	DNA-binding transcription factor activity
BKY56_RS03305	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BKY56_RS03310	COG5457	Domain of unknown function (DUF1127)
BKY56_RS03320	COG1566	PFAM secretion protein HlyD family protein
BKY56_RS03335	COG1924	4 iron, 4 sulfur cluster binding
BKY56_RS03340	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
BKY56_RS03355	COG2733	membrane
BKY56_RS03365	COG1917	Cupin 2, conserved barrel domain protein
BKY56_RS03365	COG2207	Transcriptional regulator
BKY56_RS03375	COG5464	transposase or invertase
BKY56_RS03380	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS03390	COG0523	cobalamin synthesis protein
BKY56_RS03395	COG2879	small protein
BKY56_RS03400	COG1966	Carbon starvation protein
BKY56_RS03415	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BKY56_RS03420	COG2368	4-hydroxyphenylacetate
BKY56_RS03440	COG3971	2-oxopent-4-enoate hydratase activity
BKY56_RS03450	COG3384	dioxygenase
BKY56_RS03455	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS03465	COG0179	Fumarylacetoacetate (FAA) hydrolase
BKY56_RS03470	COG1846	Transcriptional regulator
BKY56_RS03500	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
BKY56_RS03510	COG4145	pantothenate transmembrane transporter activity
BKY56_RS03515	COG3734	2-keto-3-deoxy-galactonokinase
BKY56_RS03520	COG0800	Aldolase
BKY56_RS03525	COG1737	Transcriptional regulator
BKY56_RS03535	COG1214	PFAM Peptidase M22, glycoprotease
BKY56_RS03535	COG0456	acetyltransferase
BKY56_RS03540	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BKY56_RS03540	COG3933	PFAM sigma-54 factor interaction domain-containing protein
BKY56_RS03555	COG3715	PTS system
BKY56_RS03560	COG3716	PTS system mannose fructose sorbose family IID component
BKY56_RS03565	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BKY56_RS03575	COG5464	transposase or invertase
BKY56_RS03590	COG1484	DNA-dependent DNA replication
BKY56_RS03605	COG2966	Psort location CytoplasmicMembrane, score
BKY56_RS03625	COG2197	response regulator
BKY56_RS03630	COG2197	response regulator
BKY56_RS03635	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BKY56_RS03640	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS03640	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS03645	COG4114	ferric iron reductase
BKY56_RS03650	COG3706	GGDEF domain
BKY56_RS03680	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
BKY56_RS03685	COG0456	acetyltransferase
BKY56_RS03690	COG1011	Hydrolase
BKY56_RS03700	COG2823	Periplasmic or secreted lipoprotein
BKY56_RS03710	COG4667	esterase of the alpha-beta hydrolase superfamily
BKY56_RS03715	COG0084	hydrolase, TatD family'
BKY56_RS03720	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BKY56_RS03750	COG3726	membrane protein affecting hemolysin expression
BKY56_RS03760	COG0560	Phosphoserine phosphatase
BKY56_RS03765	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BKY56_RS03775	COG0488	(ABC) transporter
BKY56_RS03785	COG0741	lytic transglycosylase activity
BKY56_RS03805	COG3708	Transcriptional regulator
BKY56_RS03805	COG2207	Transcriptional regulator
BKY56_RS03810	COG3045	CreA protein
BKY56_RS03815	COG0745	RESPONSE REGULATOR receiver
BKY56_RS03820	COG2205	protein histidine kinase activity
BKY56_RS03825	COG4452	Inner membrane protein CreD
BKY56_RS03830	COG0745	RESPONSE REGULATOR receiver
BKY56_RS03845	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
BKY56_RS03855	COG0527	aspartate kinase activity
BKY56_RS03855	COG0460	homoserine dehydrogenase
BKY56_RS03865	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BKY56_RS03880	COG1115	amino acid carrier protein
BKY56_RS03885	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BKY56_RS03890	COG0521	Mo-molybdopterin cofactor biosynthetic process
BKY56_RS03895	COG0477	Major facilitator Superfamily
BKY56_RS03900	COG1584	GPR1 FUN34 yaaH family protein
BKY56_RS03905	COG4735	regulation of single-species biofilm formation
BKY56_RS03930	COG0583	DNA-binding transcription factor activity
BKY56_RS03950	COG0196	riboflavin kinase activity
BKY56_RS03965	COG1047	Peptidyl-prolyl cis-trans
BKY56_RS03990	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BKY56_RS04060	COG0505	Belongs to the CarA family
BKY56_RS04115	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BKY56_RS04125	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BKY56_RS04130	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BKY56_RS04145	COG3493	citrate carrier protein
BKY56_RS04160	COG0564	pseudouridine synthase activity
BKY56_RS04170	COG0417	DNA replication proofreading
BKY56_RS04175	COG0235	Class ii aldolase
BKY56_RS04195	COG0586	Pfam SNARE associated Golgi protein
BKY56_RS04205	COG1178	ABC-type Fe3 transport system permease component
BKY56_RS04225	COG2814	Major facilitator Superfamily
BKY56_RS04230	COG2271	Major facilitator Superfamily
BKY56_RS04235	COG0583	DNA-binding transcription factor activity
BKY56_RS04245	COG0738	Major facilitator superfamily
BKY56_RS04295	COG0028	Belongs to the TPP enzyme family
BKY56_RS04305	COG1609	Transcriptional regulator
BKY56_RS04330	COG0768	penicillin binding
BKY56_RS04335	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BKY56_RS04340	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BKY56_RS04355	COG0772	Belongs to the SEDS family
BKY56_RS04380	COG0849	cell division
BKY56_RS04385	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BKY56_RS04405	COG0494	nUDIX hydrolase
BKY56_RS04430	COG1459	type II secretion system
BKY56_RS04435	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BKY56_RS04440	COG4969	Belongs to the N-Me-Phe pilin family
BKY56_RS04450	COG3023	N-Acetylmuramoyl-L-alanine amidase
BKY56_RS04455	COG3725	Membrane protein required for beta-lactamase induction
BKY56_RS04460	COG3940	Belongs to the glycosyl hydrolase 43 family
BKY56_RS04465	COG2211	Major facilitator Superfamily
BKY56_RS04470	COG1113	amino acid transport
BKY56_RS04475	COG2186	Transcriptional regulator
BKY56_RS04480	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
BKY56_RS04485	COG0508	dehydrogenase complex catalyzes the overall conversion of
BKY56_RS04490	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BKY56_RS04505	COG3064	Membrane
BKY56_RS04560	COG2132	Multicopper oxidase
BKY56_RS04565	COG4993	Dehydrogenase
BKY56_RS04575	COG0288	reversible hydration of carbon dioxide
BKY56_RS04580	COG1131	(ABC) transporter
BKY56_RS04585	COG0842	Transport permease protein
BKY56_RS04590	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS04595	COG0726	polysaccharide deacetylase
BKY56_RS04615	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BKY56_RS04620	COG0617	tRNA 3'-terminal CCA addition
BKY56_RS04640	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
BKY56_RS04645	COG1643	Atp-dependent helicase
BKY56_RS04735	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BKY56_RS04740	COG4774	siderophore transport
BKY56_RS04745	COG1120	ATPase activity
BKY56_RS04750	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BKY56_RS04755	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS04775	COG2860	membrane
BKY56_RS04795	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BKY56_RS04800	COG3835	regulator
BKY56_RS04815	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BKY56_RS04820	COG0024	Methionine aminopeptidase
BKY56_RS04845	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BKY56_RS04860	COG0575	Belongs to the CDS family
BKY56_RS04865	COG0750	zinc metalloprotease
BKY56_RS04875	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
BKY56_RS04905	COG0587	DNA-directed DNA polymerase activity
BKY56_RS04915	COG1982	Orn Lys Arg decarboxylase major
BKY56_RS04920	COG0346	lactoylglutathione lyase activity
BKY56_RS04930	COG4568	rho-dependent transcription termination
BKY56_RS04945	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BKY56_RS04950	COG3015	lipoprotein NlpE involved in copper resistance
BKY56_RS04955	COG0791	NLP P60 protein
BKY56_RS04965	COG1720	tRNA m6t6A37 methyltransferase activity
BKY56_RS04975	COG1464	Belongs to the NlpA lipoprotein family
BKY56_RS04980	COG2011	ABC-type metal ion transport system permease component
BKY56_RS04990	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BKY56_RS05030	COG0656	L-ascorbic acid biosynthetic process
BKY56_RS05035	COG0583	DNA-binding transcription factor activity
BKY56_RS05040	COG2814	Major facilitator Superfamily
BKY56_RS05050	COG2226	methyltransferase
BKY56_RS05055	COG0741	lytic transglycosylase activity
BKY56_RS05055	COG1388	LysM domain
BKY56_RS05065	COG2226	methyltransferase
BKY56_RS05075	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BKY56_RS05090	COG0583	DNA-binding transcription factor activity
BKY56_RS05100	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BKY56_RS05105	COG1960	acyl-CoA dehydrogenase activity
BKY56_RS05115	COG0121	glutamine amidotransferase
BKY56_RS05120	COG3034	peptidoglycan biosynthetic process
BKY56_RS05140	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BKY56_RS05145	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BKY56_RS05160	COG2991	Protein conserved in bacteria
BKY56_RS05175	COG0454	-acetyltransferase
BKY56_RS05180	COG2195	Cleaves the N-terminal amino acid of tripeptides
BKY56_RS05200	COG1802	Transcriptional regulator
BKY56_RS05205	COG1113	amino acid transport
BKY56_RS05210	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BKY56_RS05215	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS05220	COG0579	oxidoreductase
BKY56_RS05240	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
BKY56_RS05245	COG0625	glutathione transferase activity
BKY56_RS05250	COG3775	system Galactitol-specific IIC component
BKY56_RS05255	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BKY56_RS05260	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS05265	COG1070	Carbohydrate kinase
BKY56_RS05290	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BKY56_RS05295	COG0508	dehydrogenase complex catalyzes the overall conversion of
BKY56_RS05300	COG0022	dehydrogenase e1 component
BKY56_RS05305	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BKY56_RS05315	COG0511	ligase activity, forming carbon-carbon bonds
BKY56_RS05320	COG0439	Biotin carboxylase
BKY56_RS05325	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BKY56_RS05330	COG0697	spore germination
BKY56_RS05345	COG1984	allophanate hydrolase subunit 2
BKY56_RS05350	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
BKY56_RS05355	COG0436	Aminotransferase
BKY56_RS05370	COG4221	oxidoreductase activity
BKY56_RS05380	COG0765	amino acid transport
BKY56_RS05395	COG4221	oxidoreductase activity
BKY56_RS05405	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS05410	COG1408	metallophosphoesterase
BKY56_RS05415	COG0583	DNA-binding transcription factor activity
BKY56_RS05420	COG0673	inositol 2-dehydrogenase activity
BKY56_RS05425	COG0673	inositol 2-dehydrogenase activity
BKY56_RS05435	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS05435	COG1263	PTS System
BKY56_RS05435	COG2190	(PTS) system
BKY56_RS05440	COG3711	transcriptional antiterminator
BKY56_RS05445	COG2814	Major facilitator Superfamily
BKY56_RS05475	COG0791	NLP P60 protein
BKY56_RS05505	COG3639	organic phosphonate transmembrane transporter activity
BKY56_RS05515	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
BKY56_RS05540	COG3188	usher protein
BKY56_RS05555	COG0765	amino acid transport
BKY56_RS05560	COG4597	amino acid ABC transporter
BKY56_RS05565	COG1126	abc transporter atp-binding protein
BKY56_RS05570	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS05605	COG4302	ethanolamine ammonia-lyase activity
BKY56_RS05610	COG4303	Ethanolamine ammonia lyase large subunit
BKY56_RS05620	COG0833	amino acid
BKY56_RS05625	COG2040	homocysteine
BKY56_RS05630	COG4521	taurine ABC transporter
BKY56_RS05635	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BKY56_RS05640	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BKY56_RS05645	COG2175	clavaminate synthase activity
BKY56_RS05655	COG0113	porphobilinogen synthase activity
BKY56_RS05660	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BKY56_RS05665	COG1335	isochorismatase
BKY56_RS05670	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
BKY56_RS05710	COG1785	Belongs to the alkaline phosphatase family
BKY56_RS05720	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BKY56_RS05730	COG3416	Protein conserved in bacteria
BKY56_RS05735	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BKY56_RS05745	COG4126	flavin adenine dinucleotide binding
BKY56_RS05760	COG1940	carbohydrate kinase activity
BKY56_RS05765	COG0419	ATPase involved in DNA repair
BKY56_RS05770	COG0420	3'-5' exonuclease activity
BKY56_RS05795	COG0366	Alpha amylase catalytic
BKY56_RS05800	COG0583	DNA-binding transcription factor activity
BKY56_RS05805	COG1335	isochorismatase
BKY56_RS05815	COG1228	amidohydrolase
BKY56_RS05825	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BKY56_RS05840	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS05845	COG0450	alkyl hydroperoxide reductase
BKY56_RS05865	COG1862	Preprotein translocase
BKY56_RS05870	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BKY56_RS05875	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BKY56_RS05895	COG4238	major outer membrane lipoprotein
BKY56_RS05905	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BKY56_RS05905	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BKY56_RS05925	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BKY56_RS05930	COG0667	Aldo Keto reductase
BKY56_RS05940	COG0142	geranyltranstransferase activity
BKY56_RS05960	COG0693	protein deglycase activity
BKY56_RS05965	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BKY56_RS05975	COG2814	Major facilitator Superfamily
BKY56_RS05980	COG0673	inositol 2-dehydrogenase activity
BKY56_RS05995	COG1053	succinate dehydrogenase
BKY56_RS06005	COG1053	succinate dehydrogenase
BKY56_RS06010	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BKY56_RS06015	COG1414	Transcriptional regulator
BKY56_RS06030	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BKY56_RS06035	COG1845	cytochrome c oxidase, subunit III
BKY56_RS06040	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BKY56_RS06045	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BKY56_RS06050	COG2223	nitrite transmembrane transporter activity
BKY56_RS06055	COG3056	Lipoprotein
BKY56_RS06060	COG0271	Belongs to the BolA IbaG family
BKY56_RS06090	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BKY56_RS06095	COG0776	regulation of translation
BKY56_RS06100	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BKY56_RS06105	COG1555	photosystem II stabilization
BKY56_RS06110	COG0824	Thioesterase
BKY56_RS06120	COG4533	DNA binding
BKY56_RS06135	COG1522	sequence-specific DNA binding
BKY56_RS06140	COG1132	(ABC) transporter
BKY56_RS06145	COG1132	(ABC) transporter
BKY56_RS06150	COG0347	Belongs to the P(II) protein family
BKY56_RS06155	COG0004	ammonium transporteR
BKY56_RS06160	COG1946	Acyl-CoA thioesterase
BKY56_RS06165	COG3126	Type III secretion system lipoprotein chaperone (YscW)
BKY56_RS06170	COG3695	enzyme binding
BKY56_RS06200	COG2364	Membrane
BKY56_RS06215	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BKY56_RS06225	COG2182	Extracellular solute-binding protein
BKY56_RS06230	COG1175	transmembrane transport
BKY56_RS06235	COG3833	ABC-type maltose transport systems, permease component
BKY56_RS06240	COG3867	Arabinogalactan endo-beta-1,4-galactanase
BKY56_RS06245	COG1874	Beta-galactosidase
BKY56_RS06290	COG0110	maltose O-acetyltransferase activity
BKY56_RS06305	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BKY56_RS06310	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS06315	COG1309	transcriptional regulator
BKY56_RS06320	COG1196	nuclear chromosome segregation
BKY56_RS06320	COG3264	Mechanosensitive ion channel
BKY56_RS06325	COG5464	transposase or invertase
BKY56_RS06335	COG3923	Primosomal replication protein n
BKY56_RS06340	COG2832	Protein of unknown function (DUF454)
BKY56_RS06385	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BKY56_RS06390	COG4651	solute:proton antiporter activity
BKY56_RS06390	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BKY56_RS06395	COG2223	nitrite transmembrane transporter activity
BKY56_RS06405	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BKY56_RS06410	COG3735	TraB family
BKY56_RS06425	COG1585	Membrane protein implicated in regulation of membrane protease activity
BKY56_RS06430	COG0330	HflC and HflK could
BKY56_RS06435	COG4619	ABC transporter
BKY56_RS06440	COG0390	transport system, permease component
BKY56_RS06450	COG3118	belongs to the thioredoxin family
BKY56_RS06455	COG0300	oxidoreductase activity
BKY56_RS06460	COG2755	lipolytic protein G-D-S-L family
BKY56_RS06465	COG4181	ATPase activity
BKY56_RS06470	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BKY56_RS06485	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BKY56_RS06490	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BKY56_RS06510	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BKY56_RS06520	COG2501	S4 domain
BKY56_RS06540	COG0582	viral genome integration into host DNA
BKY56_RS06615	COG0305	Participates in initiation and elongation during chromosome replication
BKY56_RS06715	COG3772	lysozyme
BKY56_RS06935	COG3539	Fimbrial protein
BKY56_RS06940	COG3121	Chaperone
BKY56_RS06945	COG3188	usher protein
BKY56_RS06960	COG1560	Kdo2-lipid A biosynthetic process
BKY56_RS06970	COG3710	Transcriptional regulator
BKY56_RS06975	COG0531	amino acid
BKY56_RS06980	COG1982	Orn Lys Arg decarboxylase major
BKY56_RS06985	COG3104	oligopeptide transport
BKY56_RS07020	COG0673	inositol 2-dehydrogenase activity
BKY56_RS07035	COG1129	ABC transporter
BKY56_RS07040	COG4211	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS07085	COG1566	PFAM secretion protein HlyD family protein
BKY56_RS07090	COG1120	ATPase activity
BKY56_RS07095	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS07115	COG1473	amidohydrolase
BKY56_RS07120	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS07125	COG0667	Aldo Keto reductase
BKY56_RS07170	COG4680	protein conserved in bacteria
BKY56_RS07185	COG0531	amino acid
BKY56_RS07195	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BKY56_RS07200	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS07215	COG1113	amino acid transport
BKY56_RS07220	COG2211	Major facilitator Superfamily
BKY56_RS07230	COG0673	inositol 2-dehydrogenase activity
BKY56_RS07240	COG2771	luxR family
BKY56_RS07255	COG3188	usher protein
BKY56_RS07285	COG0668	transmembrane transport
BKY56_RS07290	COG0477	Major facilitator Superfamily
BKY56_RS07310	COG3933	PFAM sigma-54 factor interaction domain-containing protein
BKY56_RS07310	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BKY56_RS07315	COG2222	sugar isomerase
BKY56_RS07320	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BKY56_RS07325	COG3716	PTS system mannose fructose sorbose family IID component
BKY56_RS07335	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS07345	COG0778	Nitroreductase
BKY56_RS07350	COG2315	Protein conserved in bacteria
BKY56_RS07395	COG3698	Phosphodiester glycosidase
BKY56_RS07405	COG0697	spore germination
BKY56_RS07420	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
BKY56_RS07425	COG0765	amino acid transport
BKY56_RS07430	COG4215	(ABC) transporter
BKY56_RS07440	COG4221	oxidoreductase activity
BKY56_RS07445	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BKY56_RS07460	COG4608	Belongs to the ABC transporter superfamily
BKY56_RS07465	COG0444	Belongs to the ABC transporter superfamily
BKY56_RS07470	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BKY56_RS07475	COG0601	transmembrane transport
BKY56_RS07480	COG0747	negative chemotaxis
BKY56_RS07510	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BKY56_RS07520	COG0668	transmembrane transport
BKY56_RS07525	COG0583	DNA-binding transcription factor activity
BKY56_RS07545	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS07550	COG1129	ABC transporter
BKY56_RS07560	COG1879	ABC-type sugar transport system periplasmic component
BKY56_RS07565	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BKY56_RS07570	COG2390	Transcriptional regulator
BKY56_RS07580	COG3959	Transketolase, thiamine diphosphate binding domain
BKY56_RS07585	COG3958	Transketolase
BKY56_RS07590	COG2977	Belongs to the P-Pant transferase superfamily
BKY56_RS07595	COG4771	TonB-dependent receptor
BKY56_RS07600	COG2382	esterase
BKY56_RS07605	COG3251	PFAM MbtH domain protein
BKY56_RS07610	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
BKY56_RS07610	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BKY56_RS07615	COG1120	ATPase activity
BKY56_RS07620	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS07625	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS07635	COG4592	Periplasmic binding protein
BKY56_RS07640	COG1169	isochorismate synthase
BKY56_RS07645	COG1021	2,3-dihydroxybenzoate-AMP ligase
BKY56_RS07650	COG1535	isochorismatase
BKY56_RS07650	COG3433	isochorismatase activity
BKY56_RS07655	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS07665	COG1966	Carbon starvation protein
BKY56_RS07670	COG2879	small protein
BKY56_RS07685	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS07690	COG0371	Dehydrogenase
BKY56_RS07695	COG1129	ABC transporter
BKY56_RS07700	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS07730	COG2271	Major facilitator Superfamily
BKY56_RS07735	COG0483	inositol monophosphate 1-phosphatase activity
BKY56_RS07745	COG0402	S-adenosylhomocysteine deaminase activity
BKY56_RS07755	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BKY56_RS07770	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BKY56_RS07780	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS07785	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS07790	COG1129	ABC transporter
BKY56_RS07815	COG0436	Aminotransferase
BKY56_RS07820	COG1475	DNA binding
BKY56_RS07825	COG3969	phosphoadenosine phosphosulfate
BKY56_RS07830	COG0583	DNA-binding transcription factor activity
BKY56_RS07835	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BKY56_RS07855	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BKY56_RS07860	COG3719	Belongs to the RNase T2 family
BKY56_RS07865	COG3069	C4-dicarboxylate transmembrane transporter activity
BKY56_RS07890	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BKY56_RS07905	COG0583	DNA-binding transcription factor activity
BKY56_RS07920	COG1686	Belongs to the peptidase S11 family
BKY56_RS07925	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BKY56_RS07930	COG0772	Belongs to the SEDS family
BKY56_RS07935	COG0768	penicillin binding
BKY56_RS07945	COG0799	negative regulation of ribosome biogenesis
BKY56_RS07965	COG1466	dna polymerase III delta subunit
BKY56_RS07980	COG2888	peptidyl-tyrosine sulfation
BKY56_RS07995	COG1126	abc transporter atp-binding protein
BKY56_RS08000	COG0765	amino acid transport
BKY56_RS08005	COG0765	amino acid transport
BKY56_RS08020	COG4535	Mg2 and Co2 transporter CorC
BKY56_RS08030	COG1702	phosphate starvation-inducible protein PhoH
BKY56_RS08040	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BKY56_RS08085	COG0367	asparagine synthase
BKY56_RS08090	COG0647	UMP catabolic process
BKY56_RS08095	COG1846	Transcriptional regulator
BKY56_RS08095	COG1940	carbohydrate kinase activity
BKY56_RS08100	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BKY56_RS08145	COG0735	belongs to the Fur family
BKY56_RS08160	COG0596	Alpha beta hydrolase
BKY56_RS08170	COG0033	Phosphoglucomutase
BKY56_RS08180	COG0745	RESPONSE REGULATOR receiver
BKY56_RS08185	COG2205	protein histidine kinase activity
BKY56_RS08215	COG0415	Belongs to the DNA photolyase family
BKY56_RS08230	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BKY56_RS08235	COG1984	allophanate hydrolase subunit 2
BKY56_RS08280	COG2009	succinate dehydrogenase
BKY56_RS08285	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BKY56_RS08290	COG1053	succinate dehydrogenase
BKY56_RS08295	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BKY56_RS08300	COG0567	Dehydrogenase, E1 component
BKY56_RS08305	COG0508	dehydrogenase complex catalyzes the overall conversion of
BKY56_RS08320	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BKY56_RS08330	COG1271	oxidase subunit
BKY56_RS08335	COG1294	oxidase, subunit
BKY56_RS08340	COG4890	Cyd operon protein YbgT
BKY56_RS08345	COG3790	cyd operon protein YbgE
BKY56_RS08350	COG0824	Thioesterase
BKY56_RS08355	COG0811	peptide transport
BKY56_RS08360	COG0848	biopolymer transport protein
BKY56_RS08365	COG3064	Membrane
BKY56_RS08375	COG2885	chlorophyll binding
BKY56_RS08380	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
BKY56_RS08425	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
BKY56_RS08430	COG3201	nicotinamide mononucleotide transporter
BKY56_RS08445	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BKY56_RS08450	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
BKY56_RS08450	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
BKY56_RS08465	COG0583	DNA-binding transcription factor activity
BKY56_RS08470	COG0471	metal ion transport
BKY56_RS08470	COG0490	domain, Protein
BKY56_RS08500	COG2017	converts alpha-aldose to the beta-anomer
BKY56_RS08510	COG1085	galactose-1-phosphate uridylyltransferase
BKY56_RS08520	COG1119	ATPase activity
BKY56_RS08525	COG3585	molybdate ion transport
BKY56_RS08525	COG2005	Transcriptional regulator
BKY56_RS08535	COG0725	ABC transporter, periplasmic molybdate-binding protein
BKY56_RS08540	COG4149	molybdate abc transporter
BKY56_RS08550	COG0561	phosphatase activity
BKY56_RS08575	COG2200	EAL domain
BKY56_RS08580	COG0789	Transcriptional regulator
BKY56_RS08610	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS08615	COG0589	response to stress
BKY56_RS08625	COG4677	pectinesterase activity
BKY56_RS08665	COG1881	PFAM PEBP family protein
BKY56_RS08670	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BKY56_RS08685	COG2226	methyltransferase
BKY56_RS08720	COG0642	Histidine kinase
BKY56_RS08725	COG0745	RESPONSE REGULATOR receiver
BKY56_RS08750	COG0521	Mo-molybdopterin cofactor biosynthetic process
BKY56_RS08760	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BKY56_RS08765	COG0314	molybdopterin synthase activity
BKY56_RS08770	COG0670	Belongs to the BI1 family
BKY56_RS08780	COG0392	lysyltransferase activity
BKY56_RS08785	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BKY56_RS08790	COG3568	Endonuclease Exonuclease Phosphatase
BKY56_RS08805	COG0842	Transport permease protein
BKY56_RS08810	COG0842	Transport permease protein
BKY56_RS08815	COG1131	(ABC) transporter
BKY56_RS08820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS08825	COG1309	transcriptional regulator
BKY56_RS08830	COG0583	DNA-binding transcription factor activity
BKY56_RS08835	COG2271	Major facilitator Superfamily
BKY56_RS08840	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS08845	COG3959	Transketolase, thiamine diphosphate binding domain
BKY56_RS08850	COG3958	Transketolase
BKY56_RS08855	COG0513	Belongs to the DEAD box helicase family
BKY56_RS08860	COG1199	ATP-dependent helicase activity
BKY56_RS08865	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BKY56_RS08875	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BKY56_RS08885	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BKY56_RS08895	COG0668	transmembrane transport
BKY56_RS08900	COG1126	abc transporter atp-binding protein
BKY56_RS08905	COG0765	amino acid transport
BKY56_RS08910	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS08925	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BKY56_RS08930	COG2194	sulfuric ester hydrolase activity
BKY56_RS08945	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BKY56_RS08950	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS08955	COG2188	Transcriptional regulator
BKY56_RS08960	COG1376	ErfK ybiS ycfS ynhG family protein
BKY56_RS08965	COG2365	Tyrosine phosphatase family
BKY56_RS08970	COG0488	(ABC) transporter
BKY56_RS08985	COG2271	Major facilitator Superfamily
BKY56_RS08990	COG1609	Transcriptional regulator
BKY56_RS09000	COG0561	phosphatase activity
BKY56_RS09005	COG1882	Formate acetyltransferase
BKY56_RS09010	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BKY56_RS09015	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BKY56_RS09020	COG0303	'Molybdopterin
BKY56_RS09035	COG0747	negative chemotaxis
BKY56_RS09060	COG2223	nitrite transmembrane transporter activity
BKY56_RS09070	COG2133	pyrroloquinoline quinone binding
BKY56_RS09075	COG0625	glutathione transferase activity
BKY56_RS09080	COG1686	Belongs to the peptidase S11 family
BKY56_RS09085	COG1349	DNA-binding transcription factor activity
BKY56_RS09090	COG0671	phosphoesterase, PA-phosphatase related
BKY56_RS09100	COG2814	Major facilitator Superfamily
BKY56_RS09105	COG0561	phosphatase activity
BKY56_RS09110	COG0738	Major facilitator superfamily
BKY56_RS09115	COG3226	Transcriptional regulator
BKY56_RS09140	COG0778	Nitroreductase
BKY56_RS09155	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BKY56_RS09160	COG3842	ATPase activity
BKY56_RS09165	COG1176	ABC-type spermidine putrescine transport system, permease component I
BKY56_RS09170	COG1177	transmembrane transport
BKY56_RS09185	COG0745	RESPONSE REGULATOR receiver
BKY56_RS09190	COG5002	protein histidine kinase activity
BKY56_RS09195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS09200	COG4160	amino acid transport
BKY56_RS09205	COG4215	(ABC) transporter
BKY56_RS09210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS09215	COG1126	abc transporter atp-binding protein
BKY56_RS09230	COG3706	GGDEF domain
BKY56_RS09230	COG4251	negative regulation of phosphorylation
BKY56_RS09230	COG5001	Diguanylate cyclase
BKY56_RS09230	COG2203	Gaf domain
BKY56_RS09235	COG3023	N-Acetylmuramoyl-L-alanine amidase
BKY56_RS09240	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BKY56_RS09245	COG0702	epimerase
BKY56_RS09250	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
BKY56_RS09255	COG0028	Belongs to the TPP enzyme family
BKY56_RS09270	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BKY56_RS09280	COG2431	L-lysine efflux transmembrane transporter activity
BKY56_RS09295	COG3593	DNA synthesis involved in DNA repair
BKY56_RS09300	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS09315	COG1278	Cold shock
BKY56_RS09325	COG0542	response to heat
BKY56_RS09340	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BKY56_RS09345	COG4988	ABC transporter
BKY56_RS09350	COG0492	ferredoxin-NADP+ reductase activity
BKY56_RS09360	COG1674	ftsk spoiiie
BKY56_RS09360	COG1178	ABC-type Fe3 transport system permease component
BKY56_RS09370	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BKY56_RS09380	COG0243	molybdopterin cofactor binding
BKY56_RS09385	COG0437	4 iron, 4 sulfur cluster binding
BKY56_RS09390	COG3302	dmso reductase anchor subunit
BKY56_RS09400	COG0477	Major facilitator Superfamily
BKY56_RS09405	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BKY56_RS09410	COG1882	Formate acetyltransferase
BKY56_RS09415	COG2116	formate transmembrane transporter activity
BKY56_RS09420	COG1944	ATP diphosphatase activity
BKY56_RS09425	COG2323	membrane
BKY56_RS09445	COG0539	negative regulation of cytoplasmic translation
BKY56_RS09455	COG2333	competence protein COMEC
BKY56_RS09455	COG0658	competence protein
BKY56_RS09470	COG3214	Protein conserved in bacteria
BKY56_RS09485	COG3173	Aminoglycoside phosphotransferase
BKY56_RS09490	COG1434	Gram-negative-bacterium-type cell wall biogenesis
BKY56_RS09495	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BKY56_RS09505	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
BKY56_RS09515	COG2989	Protein conserved in bacteria
BKY56_RS09525	COG3108	Peptidase M15
BKY56_RS09530	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BKY56_RS09535	COG1448	Aminotransferase
BKY56_RS09540	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BKY56_RS09550	COG1522	sequence-specific DNA binding
BKY56_RS09560	COG0814	amino acid
BKY56_RS09570	COG1473	amidohydrolase
BKY56_RS09585	COG0308	aminopeptidase N
BKY56_RS09595	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BKY56_RS09600	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BKY56_RS09605	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BKY56_RS09610	COG0431	NADPH-dependent FMN reductase
BKY56_RS09625	COG0633	Ferredoxin
BKY56_RS09625	COG3217	Mosc domain protein beta barrel domain protein
BKY56_RS09635	COG0488	(ABC) transporter
BKY56_RS09640	COG2995	paraquat-inducible protein a
BKY56_RS09645	COG3008	intermembrane lipid transfer
BKY56_RS09645	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BKY56_RS09650	COG3009	Protein conserved in bacteria
BKY56_RS09660	COG3130	regulation of translation
BKY56_RS09670	COG1067	ATP-dependent peptidase activity
BKY56_RS09695	COG3070	regulator of competence-specific genes
BKY56_RS09700	COG1289	transmembrane transporter activity
BKY56_RS09705	COG3304	Inner membrane component domain
BKY56_RS09710	COG0210	DNA helicase
BKY56_RS09720	COG1832	CoA-binding protein
BKY56_RS09735	COG1881	PFAM PEBP family protein
BKY56_RS09740	COG2207	Transcriptional regulator
BKY56_RS09755	COG0670	Belongs to the BI1 family
BKY56_RS09770	COG2200	EAL domain
BKY56_RS09780	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BKY56_RS09785	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS09790	COG4638	Rieske (2fe-2S)
BKY56_RS09795	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BKY56_RS09800	COG0473	3-isopropylmalate dehydrogenase activity
BKY56_RS09805	COG0583	DNA-binding transcription factor activity
BKY56_RS09810	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BKY56_RS09815	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS09820	COG1396	sequence-specific DNA binding
BKY56_RS09820	COG1917	Cupin 2, conserved barrel domain protein
BKY56_RS09825	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BKY56_RS09830	COG0174	glutamine synthetase
BKY56_RS09840	COG0531	amino acid
BKY56_RS09855	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS09880	COG3729	General stress protein
BKY56_RS09890	COG2233	PERMEase
BKY56_RS09925	COG1309	transcriptional regulator
BKY56_RS09945	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BKY56_RS09955	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BKY56_RS09975	COG1702	phosphate starvation-inducible protein PhoH
BKY56_RS09980	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BKY56_RS09995	COG1335	isochorismatase
BKY56_RS10005	COG0583	DNA-binding transcription factor activity
BKY56_RS10010	COG1309	transcriptional regulator
BKY56_RS10040	COG3381	protein complex oligomerization
BKY56_RS10080	COG5645	(Lipo)protein
BKY56_RS10100	COG1560	Kdo2-lipid A biosynthetic process
BKY56_RS10150	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BKY56_RS10170	COG2814	Major facilitator Superfamily
BKY56_RS10175	COG0583	DNA-binding transcription factor activity
BKY56_RS10180	COG1530	ribonuclease E activity
BKY56_RS10200	COG1399	metal-binding, possibly nucleic acid-binding protein
BKY56_RS10220	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BKY56_RS10235	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BKY56_RS10240	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BKY56_RS10245	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BKY56_RS10255	COG0470	DNA polymerase III
BKY56_RS10260	COG0084	hydrolase, TatD family'
BKY56_RS10270	COG0537	adenosine 5'-monophosphoramidase activity
BKY56_RS10275	COG5633	Lipoprotein
BKY56_RS10300	COG1252	NADH dehydrogenase
BKY56_RS10305	COG3134	Outer membrane lipoprotein
BKY56_RS10315	COG1309	transcriptional regulator
BKY56_RS10325	COG1376	ErfK ybiS ycfS ynhG family protein
BKY56_RS10325	COG1388	LysM domain
BKY56_RS10330	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BKY56_RS10335	COG4591	ABC-type transport system involved in lipoprotein release permease component
BKY56_RS10345	COG4591	ABC-type transport system involved in lipoprotein release permease component
BKY56_RS10355	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BKY56_RS10365	COG2390	Transcriptional regulator
BKY56_RS10380	COG3395	kinase activity
BKY56_RS10395	COG0698	ribose 5-phosphate isomerase
BKY56_RS10400	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BKY56_RS10405	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BKY56_RS10410	COG0318	PFAM AMP-dependent synthetase and ligase
BKY56_RS10425	COG1177	transmembrane transport
BKY56_RS10445	COG2850	peptidyl-arginine hydroxylation
BKY56_RS10450	COG2205	protein histidine kinase activity
BKY56_RS10470	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BKY56_RS10490	COG1187	pseudouridine synthase activity
BKY56_RS10495	COG0538	isocitrate dehydrogenase activity
BKY56_RS10500	COG0640	Transcriptional regulator
BKY56_RS10525	COG3813	Protein conserved in bacteria
BKY56_RS10530	COG1063	alcohol dehydrogenase
BKY56_RS10535	COG3729	General stress protein
BKY56_RS10540	COG3685	Protein conserved in bacteria
BKY56_RS10545	COG3685	Protein conserved in bacteria
BKY56_RS10550	COG3546	catalase activity
BKY56_RS10555	COG1271	oxidase subunit
BKY56_RS10560	COG1294	oxidase, subunit
BKY56_RS10585	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
BKY56_RS10590	COG0583	DNA-binding transcription factor activity
BKY56_RS10595	COG3706	GGDEF domain
BKY56_RS10600	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BKY56_RS10615	COG1560	Kdo2-lipid A biosynthetic process
BKY56_RS10625	COG3182	Iron-regulated membrane protein
BKY56_RS10645	COG2203	Gaf domain
BKY56_RS10645	COG2199	diguanylate cyclase activity
BKY56_RS10650	COG3042	response to heat
BKY56_RS10655	COG3189	MarR family transcriptional regulator
BKY56_RS10660	COG1683	Conserved Protein
BKY56_RS10665	COG0504	CTP synthase activity
BKY56_RS10670	COG2807	transmembrane transport
BKY56_RS10675	COG2207	Transcriptional regulator
BKY56_RS10685	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BKY56_RS10690	COG0859	PFAM glycosyl transferase family 9
BKY56_RS10700	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BKY56_RS10705	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BKY56_RS10710	COG0583	DNA-binding transcription factor activity
BKY56_RS10715	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS10735	COG0386	Belongs to the glutathione peroxidase family
BKY56_RS10750	COG2766	serine protein kinase
BKY56_RS10755	COG3713	MltA-interacting MipA family protein
BKY56_RS10760	COG0656	L-ascorbic acid biosynthetic process
BKY56_RS10780	COG3139	Protein of unknown function (DUF1315)
BKY56_RS10795	COG1335	isochorismatase
BKY56_RS10800	COG0252	asparaginase activity
BKY56_RS10805	COG0616	signal peptide processing
BKY56_RS10810	COG0778	Nitroreductase
BKY56_RS10830	COG0709	Synthesizes selenophosphate from selenide and ATP
BKY56_RS10835	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BKY56_RS10840	COG3321	synthase
BKY56_RS10840	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS10840	COG0604	alcohol dehydrogenase
BKY56_RS10845	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BKY56_RS10850	COG0494	nUDIX hydrolase
BKY56_RS10855	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BKY56_RS10860	COG2897	thiosulfate sulfurtransferase activity
BKY56_RS10865	COG4136	ATPase activity
BKY56_RS10870	COG4135	transport system, permease component
BKY56_RS10875	COG4134	Bacterial extracellular solute-binding protein
BKY56_RS10880	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BKY56_RS10885	COG0398	Pfam SNARE associated Golgi protein
BKY56_RS10890	COG0398	Pfam SNARE associated Golgi protein
BKY56_RS10895	COG0708	Exodeoxyribonuclease III
BKY56_RS10905	COG3138	arginine N-succinyltransferase
BKY56_RS10915	COG3724	N-succinylarginine dihydrolase activity
BKY56_RS10925	COG3678	ATP-independent chaperone mediated protein folding
BKY56_RS10930	COG0322	excinuclease ABC activity
BKY56_RS10940	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BKY56_RS10945	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS10950	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS10955	COG1447	Phosphotransferase system cellobiose-specific component IIA
BKY56_RS10960	COG1917	Cupin 2, conserved barrel domain protein
BKY56_RS10960	COG2169	Transcriptional regulator
BKY56_RS10965	COG1486	melibiose metabolic process
BKY56_RS10975	COG0753	catalase activity
BKY56_RS10985	COG1823	symporter activity
BKY56_RS10990	COG1988	membrane-bound metal-dependent
BKY56_RS10995	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS11030	COG0727	PFAM Uncharacterised protein family (UPF0153)
BKY56_RS11035	COG3047	cAMP biosynthetic process
BKY56_RS11045	COG4774	siderophore transport
BKY56_RS11100	COG0134	indole-3-glycerol-phosphate synthase activity
BKY56_RS11100	COG0135	phosphoribosylanthranilate isomerase activity
BKY56_RS11105	COG0512	Glutamine amidotransferase of anthranilate synthase
BKY56_RS11105	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BKY56_RS11110	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BKY56_RS11120	COG0009	L-threonylcarbamoyladenylate synthase
BKY56_RS11130	COG0583	DNA-binding transcription factor activity
BKY56_RS11160	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
BKY56_RS11165	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS11175	COG0616	signal peptide processing
BKY56_RS11210	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BKY56_RS11220	COG0671	phosphoesterase, PA-phosphatase related
BKY56_RS11225	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
BKY56_RS11230	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BKY56_RS11240	COG0023	Translation Initiation Factor
BKY56_RS11250	COG1349	DNA-binding transcription factor activity
BKY56_RS11265	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BKY56_RS11265	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BKY56_RS11270	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BKY56_RS11280	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BKY56_RS11295	COG4171	peptide transport system, permease
BKY56_RS11310	COG0702	epimerase
BKY56_RS11325	COG1473	amidohydrolase
BKY56_RS11335	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BKY56_RS11340	COG1842	Phage shock protein A
BKY56_RS11350	COG1983	PspC domain protein
BKY56_RS11360	COG3106	COG3106 Predicted ATPase
BKY56_RS11370	COG0583	DNA-binding transcription factor activity
BKY56_RS11375	COG1486	melibiose metabolic process
BKY56_RS11385	COG3180	Ammonia monooxygenase
BKY56_RS11390	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
BKY56_RS11395	COG4948	Mandelate Racemase Muconate Lactonizing
BKY56_RS11400	COG2866	Carboxypeptidase
BKY56_RS11405	COG4166	transmembrane transport
BKY56_RS11435	COG0656	L-ascorbic acid biosynthetic process
BKY56_RS11455	COG0583	DNA-binding transcription factor activity
BKY56_RS11460	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS11465	COG1078	dGTPase activity
BKY56_RS11470	COG0693	protein deglycase activity
BKY56_RS11475	COG0582	viral genome integration into host DNA
BKY56_RS11555	COG0484	heat shock protein binding
BKY56_RS11610	COG1802	Transcriptional regulator
BKY56_RS11610	COG4626	Terminase
BKY56_RS11615	COG4695	Portal protein
BKY56_RS11620	COG0740	serine-type endopeptidase activity
BKY56_RS11720	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BKY56_RS11765	COG2885	chlorophyll binding
BKY56_RS11865	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS11870	COG1309	transcriptional regulator
BKY56_RS11875	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS11895	COG0583	DNA-binding transcription factor activity
BKY56_RS11920	COG0604	alcohol dehydrogenase
BKY56_RS11925	COG0436	Aminotransferase
BKY56_RS11940	COG2011	ABC-type metal ion transport system permease component
BKY56_RS11945	COG1448	Aminotransferase
BKY56_RS11955	COG1522	sequence-specific DNA binding
BKY56_RS11960	COG1113	amino acid transport
BKY56_RS11975	COG0673	inositol 2-dehydrogenase activity
BKY56_RS11980	COG1349	DNA-binding transcription factor activity
BKY56_RS11995	COG0513	Belongs to the DEAD box helicase family
BKY56_RS12005	COG0589	response to stress
BKY56_RS12015	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BKY56_RS12020	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
BKY56_RS12020	COG1013	pyruvate-flavodoxin oxidoreductase activity
BKY56_RS12020	COG0674	pyruvate-flavodoxin oxidoreductase activity
BKY56_RS12020	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BKY56_RS12030	COG3042	response to heat
BKY56_RS12035	COG3187	Heat shock protein
BKY56_RS12040	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BKY56_RS12045	COG0586	Pfam SNARE associated Golgi protein
BKY56_RS12050	COG2911	Protein conserved in bacteria
BKY56_RS12060	COG3784	Protein of unknown function (DUF1318)
BKY56_RS12065	COG2207	Transcriptional regulator
BKY56_RS12070	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS12100	COG2030	dehydratase
BKY56_RS12100	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS12105	COG3396	Phenylacetate-CoA oxygenase
BKY56_RS12110	COG3460	Phenylacetate-CoA oxygenase
BKY56_RS12115	COG3396	Phenylacetate-CoA oxygenase
BKY56_RS12120	COG2151	metal-sulfur cluster biosynthetic enzyme
BKY56_RS12125	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BKY56_RS12130	COG1024	Enoyl-CoA hydratase
BKY56_RS12135	COG1024	Enoyl-CoA hydratase
BKY56_RS12140	COG1250	3-hydroxyacyl-CoA dehydrogenase
BKY56_RS12145	COG2050	protein possibly involved in aromatic compounds catabolism
BKY56_RS12150	COG0183	Belongs to the thiolase family
BKY56_RS12155	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
BKY56_RS12160	COG3327	negative regulation of DNA-templated transcription, initiation
BKY56_RS12165	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BKY56_RS12180	COG1643	Atp-dependent helicase
BKY56_RS12185	COG4122	O-methyltransferase activity
BKY56_RS12210	COG0583	DNA-binding transcription factor activity
BKY56_RS12215	COG0667	Aldo Keto reductase
BKY56_RS12220	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BKY56_RS12225	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BKY56_RS12230	COG3138	arginine N-succinyltransferase
BKY56_RS12235	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS12240	COG3724	N-succinylarginine dihydrolase activity
BKY56_RS12245	COG2988	succinylglutamate desuccinylase activity
BKY56_RS12250	COG1113	amino acid transport
BKY56_RS12260	COG1434	Gram-negative-bacterium-type cell wall biogenesis
BKY56_RS12265	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS12270	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BKY56_RS12275	COG0401	homolog of Blt101
BKY56_RS12280	COG5562	phage envelope protein
BKY56_RS12285	COG0425	Belongs to the sulfur carrier protein TusA family
BKY56_RS12290	COG2391	methyltransferase activity
BKY56_RS12315	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BKY56_RS12320	COG1263	PTS System
BKY56_RS12320	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS12325	COG1609	Transcriptional regulator
BKY56_RS12330	COG5339	Protein conserved in bacteria
BKY56_RS12335	COG1482	cell wall glycoprotein biosynthetic process
BKY56_RS12340	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
BKY56_RS12340	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
BKY56_RS12345	COG0114	fumarate hydratase activity
BKY56_RS12355	COG2205	protein histidine kinase activity
BKY56_RS12365	COG0745	RESPONSE REGULATOR receiver
BKY56_RS12370	COG3136	membrane protein required for alginate biosynthesis
BKY56_RS12380	COG0531	amino acid
BKY56_RS12400	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BKY56_RS12405	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BKY56_RS12420	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BKY56_RS12435	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
BKY56_RS12440	COG1473	amidohydrolase
BKY56_RS12450	COG0583	DNA-binding transcription factor activity
BKY56_RS12455	COG2840	Smr protein MutS2
BKY56_RS12460	COG1414	Transcriptional regulator
BKY56_RS12470	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BKY56_RS12475	COG0183	Belongs to the thiolase family
BKY56_RS12485	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BKY56_RS12490	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BKY56_RS12510	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
BKY56_RS12510	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
BKY56_RS12535	COG4565	transcriptional regulatory protein
BKY56_RS12540	COG3290	protein histidine kinase activity
BKY56_RS12580	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BKY56_RS12590	COG0679	Auxin Efflux Carrier
BKY56_RS12620	COG0628	permease
BKY56_RS12640	COG3591	Belongs to the peptidase S1B family
BKY56_RS12650	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
BKY56_RS12655	COG2814	Major facilitator Superfamily
BKY56_RS12660	COG0583	DNA-binding transcription factor activity
BKY56_RS12665	COG1940	carbohydrate kinase activity
BKY56_RS12670	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BKY56_RS12685	COG3302	dmso reductase anchor subunit
BKY56_RS12690	COG0437	4 iron, 4 sulfur cluster binding
BKY56_RS12695	COG0243	molybdopterin cofactor binding
BKY56_RS12710	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BKY56_RS12725	COG2271	Major facilitator Superfamily
BKY56_RS12730	COG0246	Mannitol dehydrogenase
BKY56_RS12735	COG0589	response to stress
BKY56_RS12740	COG1802	Transcriptional regulator
BKY56_RS12745	COG4221	oxidoreductase activity
BKY56_RS12760	COG2207	Transcriptional regulator
BKY56_RS12765	COG2135	peptidase activity
BKY56_RS12785	COG0071	Belongs to the small heat shock protein (HSP20) family
BKY56_RS12790	COG1546	Belongs to the CinA family
BKY56_RS12795	COG2200	EAL domain
BKY56_RS12810	COG3708	Transcriptional regulator
BKY56_RS12810	COG2207	Transcriptional regulator
BKY56_RS12815	COG2610	gluconate transmembrane transporter activity
BKY56_RS12820	COG3622	Belongs to the hyi family
BKY56_RS12825	COG0235	Class ii aldolase
BKY56_RS12830	COG3395	kinase activity
BKY56_RS12835	COG2084	Dehydrogenase
BKY56_RS12840	COG1349	DNA-binding transcription factor activity
BKY56_RS12855	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BKY56_RS12860	COG2223	nitrite transmembrane transporter activity
BKY56_RS12895	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BKY56_RS12930	COG2814	Major facilitator Superfamily
BKY56_RS12935	COG0697	spore germination
BKY56_RS12945	COG4977	sequence-specific DNA binding
BKY56_RS12970	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS12975	COG2731	YhcH YjgK YiaL family protein
BKY56_RS12990	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BKY56_RS13000	COG3395	kinase activity
BKY56_RS13005	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BKY56_RS13010	COG1349	DNA-binding transcription factor activity
BKY56_RS13015	COG0039	L-malate dehydrogenase activity
BKY56_RS13025	COG0583	DNA-binding transcription factor activity
BKY56_RS13030	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS13045	COG2199	diguanylate cyclase activity
BKY56_RS13125	COG0477	Major facilitator Superfamily
BKY56_RS13135	COG2070	2-Nitropropane dioxygenase
BKY56_RS13140	COG2011	ABC-type metal ion transport system permease component
BKY56_RS13160	COG4628	conserved protein (DUF2132)
BKY56_RS13175	COG2207	Transcriptional regulator
BKY56_RS13205	COG2233	PERMEase
BKY56_RS13210	COG3648	Uricase
BKY56_RS13210	COG3195	allantoin biosynthetic process
BKY56_RS13215	COG2351	hydroxyisourate hydrolase activity
BKY56_RS13220	COG1396	sequence-specific DNA binding
BKY56_RS13225	COG3550	peptidyl-serine autophosphorylation
BKY56_RS13230	COG1649	PFAM Uncharacterised BCR, COG1649
BKY56_RS13245	COG3188	usher protein
BKY56_RS13280	COG3300	MHYT domain
BKY56_RS13280	COG5001	Diguanylate cyclase
BKY56_RS13285	COG2819	hydrolase of the alpha beta superfamily
BKY56_RS13295	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS13295	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS13300	COG2814	Major facilitator Superfamily
BKY56_RS13310	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS13310	COG1263	PTS System
BKY56_RS13315	COG2186	Transcriptional regulator
BKY56_RS13335	COG3835	regulator
BKY56_RS13340	COG1929	Belongs to the glycerate kinase type-1 family
BKY56_RS13385	COG0738	Major facilitator superfamily
BKY56_RS13390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BKY56_RS13395	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BKY56_RS13400	COG1349	DNA-binding transcription factor activity
BKY56_RS13415	COG1349	DNA-binding transcription factor activity
BKY56_RS13420	COG4977	sequence-specific DNA binding
BKY56_RS13440	COG4977	sequence-specific DNA binding
BKY56_RS13470	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BKY56_RS13485	COG0667	Aldo Keto reductase
BKY56_RS13490	COG3386	PFAM SMP-30 Gluconolaconase
BKY56_RS13495	COG0667	Aldo Keto reductase
BKY56_RS13500	COG0667	Aldo Keto reductase
BKY56_RS13510	COG0456	acetyltransferase
BKY56_RS13510	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BKY56_RS13540	COG1652	LysM domain
BKY56_RS13570	COG1609	Transcriptional regulator
BKY56_RS13580	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS13595	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BKY56_RS13605	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BKY56_RS13610	COG0583	DNA-binding transcription factor activity
BKY56_RS13615	COG0583	DNA-binding transcription factor activity
BKY56_RS13630	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BKY56_RS13630	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
BKY56_RS13630	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BKY56_RS13635	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BKY56_RS13645	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BKY56_RS13650	COG3037	sugar-specific permease SgaT UlaA
BKY56_RS13660	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS13665	COG1609	Transcriptional regulator
BKY56_RS13675	COG2223	nitrite transmembrane transporter activity
BKY56_RS13705	COG0477	Major facilitator Superfamily
BKY56_RS13710	COG4529	Protein conserved in bacteria
BKY56_RS13715	COG1902	pentaerythritol trinitrate reductase activity
BKY56_RS13725	COG0583	DNA-binding transcription factor activity
BKY56_RS13730	COG2070	2-Nitropropane dioxygenase
BKY56_RS13740	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BKY56_RS13750	COG0765	amino acid transport
BKY56_RS13795	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BKY56_RS13815	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BKY56_RS13835	COG2207	Transcriptional regulator
BKY56_RS13855	COG0406	alpha-ribazole phosphatase activity
BKY56_RS13890	COG1953	Uracil, thiamine, allantoin
BKY56_RS13895	COG0402	S-adenosylhomocysteine deaminase activity
BKY56_RS13915	COG3706	GGDEF domain
BKY56_RS13930	COG0673	inositol 2-dehydrogenase activity
BKY56_RS13945	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BKY56_RS13950	COG1116	anion transmembrane transporter activity
BKY56_RS13955	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BKY56_RS13960	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BKY56_RS13965	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BKY56_RS13970	COG0076	glutamate decarboxylase activity
BKY56_RS13985	COG2205	protein histidine kinase activity
BKY56_RS13995	COG0596	Alpha beta hydrolase
BKY56_RS14035	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BKY56_RS14035	COG0519	Catalyzes the synthesis of GMP from XMP
BKY56_RS14055	COG0583	DNA-binding transcription factor activity
BKY56_RS14065	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BKY56_RS14070	COG1285	pathogenesis
BKY56_RS14080	COG2814	Major facilitator Superfamily
BKY56_RS14085	COG1447	Phosphotransferase system cellobiose-specific component IIA
BKY56_RS14090	COG0583	DNA-binding transcription factor activity
BKY56_RS14095	COG0243	molybdopterin cofactor binding
BKY56_RS14100	COG3781	membrane
BKY56_RS14125	COG1764	response to oxidative stress
BKY56_RS14130	COG3111	PFAM Bacterial OB fold (BOF) protein
BKY56_RS14140	COG2323	membrane
BKY56_RS14150	COG0366	Alpha amylase catalytic
BKY56_RS14160	COG3685	Protein conserved in bacteria
BKY56_RS14180	COG3729	General stress protein
BKY56_RS14185	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS14220	COG0488	(ABC) transporter
BKY56_RS14235	COG1064	alcohol dehydrogenase
BKY56_RS14240	COG0747	negative chemotaxis
BKY56_RS14250	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BKY56_RS14260	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BKY56_RS14270	COG2814	Major facilitator Superfamily
BKY56_RS14280	COG2326	polyphosphate kinase activity
BKY56_RS14295	COG2864	formate dehydrogenase
BKY56_RS14300	COG0437	4 iron, 4 sulfur cluster binding
BKY56_RS14325	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
BKY56_RS14335	COG3485	protocatechuate 3,4-dioxygenase
BKY56_RS14340	COG4829	muconolactone delta-isomerase
BKY56_RS14345	COG4948	Mandelate Racemase Muconate Lactonizing
BKY56_RS14350	COG1414	Transcriptional regulator
BKY56_RS14370	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
BKY56_RS14375	COG1140	nitrate reductase beta subunit
BKY56_RS14380	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
BKY56_RS14385	COG2181	nitrate reductase activity
BKY56_RS14390	COG2162	N-hydroxyarylamine O-acetyltransferase activity
BKY56_RS14395	COG1178	ABC-type Fe3 transport system permease component
BKY56_RS14400	COG1840	ABC-type Fe3 transport system, periplasmic component
BKY56_RS14405	COG3842	ATPase activity
BKY56_RS14410	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BKY56_RS14425	COG2211	Major facilitator Superfamily
BKY56_RS14455	COG0625	glutathione transferase activity
BKY56_RS14465	COG1126	abc transporter atp-binding protein
BKY56_RS14470	COG0765	amino acid transport
BKY56_RS14480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS14485	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BKY56_RS14490	COG1473	amidohydrolase
BKY56_RS14495	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BKY56_RS14500	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BKY56_RS14525	COG4772	TonB-dependent receptor
BKY56_RS14530	COG1228	amidohydrolase
BKY56_RS14535	COG3691	Protein conserved in bacteria
BKY56_RS14545	COG2130	NADP-dependent
BKY56_RS14555	COG1247	-acetyltransferase
BKY56_RS14560	COG3238	Protein conserved in bacteria
BKY56_RS14570	COG0747	negative chemotaxis
BKY56_RS14575	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS14605	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS14610	COG1177	transmembrane transport
BKY56_RS14615	COG1176	ABC-type spermidine putrescine transport system, permease component I
BKY56_RS14620	COG3842	ATPase activity
BKY56_RS14625	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BKY56_RS14630	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BKY56_RS14635	COG1271	oxidase subunit
BKY56_RS14640	COG1294	oxidase, subunit
BKY56_RS14660	COG0826	peptidase U32
BKY56_RS14670	COG1396	sequence-specific DNA binding
BKY56_RS14675	COG3135	benzoate transporter
BKY56_RS14680	COG2207	Transcriptional regulator
BKY56_RS14680	COG3708	Transcriptional regulator
BKY56_RS14695	COG0500	methyltransferase
BKY56_RS14700	COG1275	C4-dicarboxylate transporter malic acid transport protein
BKY56_RS14705	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BKY56_RS14710	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BKY56_RS14725	COG2272	Belongs to the type-B carboxylesterase lipase family
BKY56_RS14730	COG5383	Protein conserved in bacteria
BKY56_RS14735	COG3485	protocatechuate 3,4-dioxygenase
BKY56_RS14740	COG3485	protocatechuate 3,4-dioxygenase
BKY56_RS14745	COG0583	DNA-binding transcription factor activity
BKY56_RS14765	COG3038	cytochrome b561
BKY56_RS14785	COG2814	Major facilitator Superfamily
BKY56_RS14795	COG0673	inositol 2-dehydrogenase activity
BKY56_RS14805	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS14840	COG4659	FMN binding
BKY56_RS14850	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BKY56_RS14865	COG0625	glutathione transferase activity
BKY56_RS14870	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BKY56_RS14885	COG3895	Periplasmic Protein
BKY56_RS14900	COG3706	GGDEF domain
BKY56_RS14915	COG1566	PFAM secretion protein HlyD family protein
BKY56_RS14920	COG1289	transmembrane transporter activity
BKY56_RS14925	COG2032	superoxide dismutase activity
BKY56_RS14930	COG4989	oxidoreductase activity
BKY56_RS14935	COG3313	Fe-S protein
BKY56_RS14940	COG1309	transcriptional regulator
BKY56_RS14945	COG1902	pentaerythritol trinitrate reductase activity
BKY56_RS14950	COG0346	lactoylglutathione lyase activity
BKY56_RS14960	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BKY56_RS14965	COG0791	NLP P60 protein
BKY56_RS14980	COG2814	Major facilitator Superfamily
BKY56_RS14995	COG0583	DNA-binding transcription factor activity
BKY56_RS15000	COG2814	Major facilitator Superfamily
BKY56_RS15005	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BKY56_RS15010	COG0307	riboflavin synthase, alpha
BKY56_RS15055	COG0300	oxidoreductase activity
BKY56_RS15075	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BKY56_RS15105	COG1349	DNA-binding transcription factor activity
BKY56_RS15110	COG0346	lactoylglutathione lyase activity
BKY56_RS15135	COG0444	Belongs to the ABC transporter superfamily
BKY56_RS15140	COG4608	Belongs to the ABC transporter superfamily
BKY56_RS15170	COG3321	synthase
BKY56_RS15170	COG0604	alcohol dehydrogenase
BKY56_RS15170	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS15215	COG0402	S-adenosylhomocysteine deaminase activity
BKY56_RS15240	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BKY56_RS15245	COG0277	FAD linked oxidase domain protein
BKY56_RS15260	COG2814	Major facilitator Superfamily
BKY56_RS15290	COG0583	DNA-binding transcription factor activity
BKY56_RS15300	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BKY56_RS15310	COG1250	3-hydroxyacyl-CoA dehydrogenase
BKY56_RS15315	COG2610	gluconate transmembrane transporter activity
BKY56_RS15320	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS15355	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BKY56_RS15375	COG0745	RESPONSE REGULATOR receiver
BKY56_RS15380	COG3850	Histidine kinase
BKY56_RS15380	COG5002	protein histidine kinase activity
BKY56_RS15395	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
BKY56_RS15400	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BKY56_RS15435	COG3088	subunit of a heme lyase
BKY56_RS15435	COG4235	cytochrome complex assembly
BKY56_RS15440	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BKY56_RS15445	COG1138	Cytochrome C-type biogenesis protein
BKY56_RS15460	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BKY56_RS15465	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BKY56_RS15470	COG4133	protoheme IX ABC transporter activity
BKY56_RS15500	COG1175	transmembrane transport
BKY56_RS15515	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
BKY56_RS15520	COG3383	formate dehydrogenase (NAD+) activity
BKY56_RS15525	COG1473	amidohydrolase
BKY56_RS15555	COG1126	abc transporter atp-binding protein
BKY56_RS15560	COG0765	amino acid transport
BKY56_RS15580	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS15585	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS15590	COG1120	ATPase activity
BKY56_RS15595	COG4774	siderophore transport
BKY56_RS15600	COG1116	anion transmembrane transporter activity
BKY56_RS15605	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BKY56_RS15630	COG0583	DNA-binding transcription factor activity
BKY56_RS15650	COG2814	Major facilitator Superfamily
BKY56_RS15685	COG1414	Transcriptional regulator
BKY56_RS15690	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BKY56_RS15695	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS15700	COG1120	ATPase activity
BKY56_RS15710	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BKY56_RS15715	COG2271	Major facilitator Superfamily
BKY56_RS15720	COG3185	4-Hydroxyphenylpyruvate dioxygenase
BKY56_RS15720	COG1082	Xylose isomerase domain protein TIM barrel
BKY56_RS15725	COG1309	transcriptional regulator
BKY56_RS15750	COG1376	ErfK ybiS ycfS ynhG family protein
BKY56_RS15765	COG0719	Fe-S assembly protein
BKY56_RS15770	COG0396	ATPase activity
BKY56_RS15775	COG0719	Fe-S assembly protein
BKY56_RS15780	COG0316	Belongs to the HesB IscA family
BKY56_RS15795	COG1304	FMN binding
BKY56_RS15820	COG0583	DNA-binding transcription factor activity
BKY56_RS15830	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS15835	COG1120	ATPase activity
BKY56_RS15865	COG2261	transglycosylase associated protein
BKY56_RS15870	COG2050	protein possibly involved in aromatic compounds catabolism
BKY56_RS15875	COG0247	lactate metabolic process
BKY56_RS15875	COG0277	FAD linked oxidase domain protein
BKY56_RS15880	COG0628	permease
BKY56_RS15890	COG0574	Belongs to the PEP-utilizing enzyme family
BKY56_RS15890	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BKY56_RS15900	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BKY56_RS15905	COG4256	Hemin uptake protein
BKY56_RS15915	COG0791	NLP P60 protein
BKY56_RS15925	COG0386	Belongs to the glutathione peroxidase family
BKY56_RS15945	COG0583	DNA-binding transcription factor activity
BKY56_RS15965	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BKY56_RS15965	COG0072	phenylalanine-tRNA ligase activity
BKY56_RS16005	COG3137	Salt-induced outer membrane protein
BKY56_RS16010	COG1105	Belongs to the carbohydrate kinase PfkB family
BKY56_RS16020	COG3001	Fructosamine kinase
BKY56_RS16030	COG2350	Protein conserved in bacteria
BKY56_RS16035	COG2353	YceI-like domain
BKY56_RS16055	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BKY56_RS16065	COG0444	Belongs to the ABC transporter superfamily
BKY56_RS16070	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BKY56_RS16075	COG0601	transmembrane transport
BKY56_RS16080	COG4166	transmembrane transport
BKY56_RS16085	COG2095	MarC family integral membrane protein
BKY56_RS16095	COG1454	alcohol dehydrogenase
BKY56_RS16095	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS16100	COG1435	thymidine kinase activity
BKY56_RS16105	COG2916	Histone family protein nucleoid-structuring protein H-NS
BKY56_RS16110	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BKY56_RS16115	COG0745	RESPONSE REGULATOR receiver
BKY56_RS16120	COG1752	Esterase of the alpha-beta hydrolase superfamily
BKY56_RS16130	COG0788	formyltetrahydrofolate deformylase activity
BKY56_RS16160	COG1522	sequence-specific DNA binding
BKY56_RS16170	COG2181	nitrate reductase activity
BKY56_RS16175	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
BKY56_RS16180	COG1140	nitrate reductase beta subunit
BKY56_RS16185	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
BKY56_RS16190	COG2223	nitrite transmembrane transporter activity
BKY56_RS16195	COG3850	Histidine kinase
BKY56_RS16200	COG2197	response regulator
BKY56_RS16205	COG4932	domain protein
BKY56_RS16210	COG0243	molybdopterin cofactor binding
BKY56_RS16215	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BKY56_RS16215	COG2146	nitrite reductase [NAD(P)H] activity
BKY56_RS16220	COG1116	anion transmembrane transporter activity
BKY56_RS16230	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BKY56_RS16235	COG3707	response regulator
BKY56_RS16240	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
BKY56_RS16250	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
BKY56_RS16255	COG4572	Cation transport regulator
BKY56_RS16260	COG0387	Pfam Sodium calcium exchanger
BKY56_RS16280	COG2890	protein-(glutamine-N5) methyltransferase activity
BKY56_RS16315	COG0659	secondary active sulfate transmembrane transporter activity
BKY56_RS16335	COG0012	GTP binding
BKY56_RS16415	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BKY56_RS16500	COG2885	chlorophyll binding
BKY56_RS16525	COG3122	Protein conserved in bacteria
BKY56_RS16540	COG0583	DNA-binding transcription factor activity
BKY56_RS16570	COG0583	DNA-binding transcription factor activity
BKY56_RS16600	COG1882	Formate acetyltransferase
BKY56_RS16615	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BKY56_RS16620	COG0583	DNA-binding transcription factor activity
BKY56_RS16660	COG2308	Evidence 4 Homologs of previously reported genes of
BKY56_RS16675	COG2211	Major facilitator Superfamily
BKY56_RS16685	COG4774	siderophore transport
BKY56_RS16695	COG1619	proteins homologs of microcin C7 resistance protein MccF
BKY56_RS16715	COG2719	SpoVR family
BKY56_RS16745	COG0179	Fumarylacetoacetate (FAA) hydrolase
BKY56_RS16760	COG2894	cell division
BKY56_RS16770	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
BKY56_RS16780	COG3065	identical protein binding
BKY56_RS16790	COG1199	ATP-dependent helicase activity
BKY56_RS16795	COG0251	oxidation-reduction process
BKY56_RS16815	COG1760	l-serine dehydratase
BKY56_RS16820	COG2200	EAL domain
BKY56_RS16825	COG1253	flavin adenine dinucleotide binding
BKY56_RS16830	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS16830	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS16835	COG3715	PTS system
BKY56_RS16840	COG3716	PTS system mannose fructose sorbose family IID component
BKY56_RS16855	COG2226	methyltransferase
BKY56_RS16860	COG0768	penicillin binding
BKY56_RS16900	COG1414	Transcriptional regulator
BKY56_RS16910	COG2814	Major facilitator Superfamily
BKY56_RS16930	COG1956	GAF domain-containing protein
BKY56_RS16935	COG2995	paraquat-inducible protein a
BKY56_RS16940	COG3008	intermembrane lipid transfer
BKY56_RS16965	COG2990	Protein conserved in bacteria
BKY56_RS16980	COG1276	copper resistance
BKY56_RS16985	COG2372	response to copper ion
BKY56_RS16995	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BKY56_RS17000	COG1770	oligopeptidase
BKY56_RS17005	COG2979	Protein of unknown function (DUF533)
BKY56_RS17010	COG3141	response to X-ray
BKY56_RS17020	COG0800	Aldolase
BKY56_RS17025	COG0129	dihydroxy-acid dehydratase activity
BKY56_RS17030	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BKY56_RS17045	COG1737	Transcriptional regulator
BKY56_RS17055	COG1560	Kdo2-lipid A biosynthetic process
BKY56_RS17060	COG0739	heme binding
BKY56_RS17065	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
BKY56_RS17075	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BKY56_RS17100	COG0494	nUDIX hydrolase
BKY56_RS17110	COG1335	isochorismatase
BKY56_RS17115	COG1801	Protein of unknown function DUF72
BKY56_RS17120	COG3788	relative of glutathione S-transferase, MAPEG superfamily
BKY56_RS17140	COG3102	Protein conserved in bacteria
BKY56_RS17150	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
BKY56_RS17175	COG1172	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS17185	COG1879	ABC-type sugar transport system periplasmic component
BKY56_RS17195	COG1528	Iron-storage protein
BKY56_RS17205	COG2211	Major facilitator Superfamily
BKY56_RS17215	COG0477	Major facilitator Superfamily
BKY56_RS17230	COG1528	Iron-storage protein
BKY56_RS17240	COG0814	amino acid
BKY56_RS17245	COG3318	Belongs to the UPF0149 family
BKY56_RS17245	COG3012	SEC-C Motif Domain Protein
BKY56_RS17260	COG5290	Psort location Cytoplasmic, score
BKY56_RS17340	COG0740	serine-type endopeptidase activity
BKY56_RS17380	COG3772	lysozyme
BKY56_RS17390	COG1598	PFAM Uncharacterised protein family UPF0150
BKY56_RS17395	COG1724	mRNA binding
BKY56_RS17415	COG1403	HNH endonuclease
BKY56_RS17505	COG2197	response regulator
BKY56_RS17515	COG2197	response regulator
BKY56_RS17520	COG1126	abc transporter atp-binding protein
BKY56_RS17525	COG0765	amino acid transport
BKY56_RS17535	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS17540	COG0366	Alpha amylase catalytic
BKY56_RS17570	COG2354	Protein conserved in bacteria
BKY56_RS17575	COG0697	spore germination
BKY56_RS17580	COG3727	T/G mismatch-specific endonuclease activity
BKY56_RS17585	COG0270	DNA (cytosine-5-)-methyltransferase activity
BKY56_RS17590	COG1418	mRNA catabolic process
BKY56_RS17600	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
BKY56_RS17650	COG0025	NhaP-type Na H and K H
BKY56_RS17655	COG1309	transcriptional regulator
BKY56_RS17660	COG0604	alcohol dehydrogenase
BKY56_RS17680	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BKY56_RS17690	COG0534	Mate efflux family protein
BKY56_RS17710	COG3706	GGDEF domain
BKY56_RS17735	COG3615	Tellurite resistance protein tehB
BKY56_RS17740	COG5001	Diguanylate cyclase
BKY56_RS17740	COG3300	MHYT domain
BKY56_RS17755	COG0477	Major facilitator Superfamily
BKY56_RS17760	COG0095	Lipoate-protein ligase
BKY56_RS17765	COG0583	DNA-binding transcription factor activity
BKY56_RS17770	COG1942	4-Oxalocrotonate Tautomerase
BKY56_RS17780	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BKY56_RS17800	COG1289	transmembrane transporter activity
BKY56_RS17815	COG2925	Exonuclease
BKY56_RS17820	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BKY56_RS17825	COG0640	Transcriptional regulator
BKY56_RS17830	COG0531	amino acid
BKY56_RS17840	COG0583	DNA-binding transcription factor activity
BKY56_RS17845	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BKY56_RS17875	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BKY56_RS17900	COG0438	transferase activity, transferring glycosyl groups
BKY56_RS18040	COG1253	flavin adenine dinucleotide binding
BKY56_RS18045	COG2982	Protein involved in outer membrane biogenesis
BKY56_RS18060	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BKY56_RS18070	COG0443	Heat shock 70 kDa protein
BKY56_RS18075	COG5002	protein histidine kinase activity
BKY56_RS18090	COG1301	dicarboxylic acid transport
BKY56_RS18115	COG2205	protein histidine kinase activity
BKY56_RS18120	COG0745	RESPONSE REGULATOR receiver
BKY56_RS18125	COG0826	peptidase U32
BKY56_RS18135	COG4608	Belongs to the ABC transporter superfamily
BKY56_RS18140	COG0444	Belongs to the ABC transporter superfamily
BKY56_RS18145	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BKY56_RS18150	COG0601	transmembrane transport
BKY56_RS18155	COG0747	negative chemotaxis
BKY56_RS18160	COG4948	Mandelate Racemase Muconate Lactonizing
BKY56_RS18165	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BKY56_RS18175	COG1070	Carbohydrate kinase
BKY56_RS18200	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BKY56_RS18210	COG1830	Aldolase
BKY56_RS18215	COG0351	phosphomethylpyrimidine kinase
BKY56_RS18230	COG0583	DNA-binding transcription factor activity
BKY56_RS18240	COG2252	PERMEase
BKY56_RS18245	COG0583	DNA-binding transcription factor activity
BKY56_RS18250	COG5455	response to cobalt ion
BKY56_RS18270	COG4807	Protein conserved in bacteria
BKY56_RS18280	COG3275	phosphorelay sensor kinase activity
BKY56_RS18290	COG1174	glycine betaine transport
BKY56_RS18295	COG1125	glycine betaine transport
BKY56_RS18300	COG1174	glycine betaine transport
BKY56_RS18305	COG1732	Glycine betaine
BKY56_RS18310	COG1472	Belongs to the glycosyl hydrolase 3 family
BKY56_RS18315	COG0277	FAD linked oxidase domain protein
BKY56_RS18325	COG1686	Belongs to the peptidase S11 family
BKY56_RS18335	COG0586	Pfam SNARE associated Golgi protein
BKY56_RS18340	COG1538	Outer membrane efflux protein
BKY56_RS18345	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS18360	COG3659	wide pore channel activity
BKY56_RS18365	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BKY56_RS18375	COG1346	cytolysis
BKY56_RS18390	COG2949	membrane
BKY56_RS18400	COG1129	ABC transporter
BKY56_RS18415	COG2311	Membrane
BKY56_RS18430	COG4771	TonB-dependent receptor
BKY56_RS18440	COG0833	amino acid
BKY56_RS18445	COG0583	DNA-binding transcription factor activity
BKY56_RS18455	COG2855	membrane
BKY56_RS18465	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BKY56_RS18465	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
BKY56_RS18465	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BKY56_RS18470	COG1105	Belongs to the carbohydrate kinase PfkB family
BKY56_RS18475	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS18475	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS18500	COG1312	Catalyzes the dehydration of D-mannonate
BKY56_RS18505	COG0246	Mannitol dehydrogenase
BKY56_RS18510	COG0523	cobalamin synthesis protein
BKY56_RS18515	COG0671	phosphoesterase, PA-phosphatase related
BKY56_RS18520	COG0791	NLP P60 protein
BKY56_RS18525	COG2200	EAL domain
BKY56_RS18530	COG4166	transmembrane transport
BKY56_RS18535	COG4174	ABC transporter (Permease)
BKY56_RS18540	COG4239	(ABC) transporter, permease
BKY56_RS18545	COG4172	Belongs to the ABC transporter superfamily
BKY56_RS18555	COG2814	Major facilitator Superfamily
BKY56_RS18560	COG1187	pseudouridine synthase activity
BKY56_RS18565	COG1061	Type III restriction enzyme res subunit
BKY56_RS18585	COG0494	nUDIX hydrolase
BKY56_RS18590	COG1349	DNA-binding transcription factor activity
BKY56_RS18615	COG0628	permease
BKY56_RS18630	COG0659	secondary active sulfate transmembrane transporter activity
BKY56_RS18635	COG2239	Acts as a magnesium transporter
BKY56_RS18640	COG4615	Cyclic peptide transporter
BKY56_RS18645	COG3145	DNA-N1-methyladenine dioxygenase activity
BKY56_RS18650	COG2169	Transcriptional regulator
BKY56_RS18650	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BKY56_RS18665	COG0642	Histidine kinase
BKY56_RS18665	COG2198	Histidine kinase
BKY56_RS18675	COG2205	protein histidine kinase activity
BKY56_RS18675	COG0784	Response regulator, receiver
BKY56_RS18705	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BKY56_RS18715	COG0584	glycerophosphoryl diester phosphodiesterase
BKY56_RS18720	COG2271	Major facilitator Superfamily
BKY56_RS18725	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BKY56_RS18735	COG0247	lactate metabolic process
BKY56_RS18745	COG2271	Major facilitator Superfamily
BKY56_RS18755	COG1414	Transcriptional regulator
BKY56_RS18770	COG5464	transposase or invertase
BKY56_RS18780	COG0318	PFAM AMP-dependent synthetase and ligase
BKY56_RS18805	COG1169	isochorismate synthase
BKY56_RS18810	COG2153	protein acetylation
BKY56_RS18825	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BKY56_RS18830	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BKY56_RS18840	COG0839	Belongs to the complex I subunit 6 family
BKY56_RS18895	COG0583	DNA-binding transcription factor activity
BKY56_RS18900	COG0436	Aminotransferase
BKY56_RS18910	COG0471	metal ion transport
BKY56_RS18910	COG0490	domain, Protein
BKY56_RS18915	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BKY56_RS18935	COG0857	belongs to the CobB CobQ family
BKY56_RS18935	COG0280	phosphate acetyltransferase
BKY56_RS18940	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
BKY56_RS18945	COG0622	Phosphoesterase
BKY56_RS18950	COG0625	glutathione transferase activity
BKY56_RS18955	COG0625	glutathione transferase activity
BKY56_RS18960	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BKY56_RS18965	COG1090	epimerase
BKY56_RS18975	COG4598	ABC transporter
BKY56_RS18980	COG4160	amino acid transport
BKY56_RS19000	COG0163	prenyltransferase activity
BKY56_RS19005	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BKY56_RS19010	COG1286	toxin biosynthetic process
BKY56_RS19015	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
BKY56_RS19020	COG0285	dihydrofolate synthase activity
BKY56_RS19030	COG0586	Pfam SNARE associated Golgi protein
BKY56_RS19040	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BKY56_RS19060	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BKY56_RS19075	COG3101	peptidyl-lysine hydroxylation
BKY56_RS19080	COG0730	response to heat
BKY56_RS19105	COG2062	phosphohistidine phosphatase, SixA
BKY56_RS19120	COG3691	Protein conserved in bacteria
BKY56_RS19135	COG2853	Lipoprotein
BKY56_RS19140	COG2116	formate transmembrane transporter activity
BKY56_RS19160	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BKY56_RS19180	COG3188	usher protein
BKY56_RS19185	COG3121	Chaperone
BKY56_RS19215	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BKY56_RS19220	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
BKY56_RS19225	COG2376	Dihydroxyacetone kinase
BKY56_RS19240	COG3716	PTS system mannose fructose sorbose family IID component
BKY56_RS19245	COG3715	PTS system
BKY56_RS19250	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS19250	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS19255	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS19255	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS19295	COG1122	ATPase activity
BKY56_RS19360	COG2171	N-acyltransferase activity
BKY56_RS19365	COG4221	oxidoreductase activity
BKY56_RS19370	COG2814	Major facilitator Superfamily
BKY56_RS19400	COG0583	DNA-binding transcription factor activity
BKY56_RS19405	COG0590	tRNA wobble adenosine to inosine editing
BKY56_RS19410	COG2807	transmembrane transport
BKY56_RS19420	COG0436	Aminotransferase
BKY56_RS19430	COG3275	phosphorelay sensor kinase activity
BKY56_RS19435	COG3279	Response regulator of the LytR AlgR family
BKY56_RS19450	COG3961	Belongs to the TPP enzyme family
BKY56_RS19455	COG0667	Aldo Keto reductase
BKY56_RS19470	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BKY56_RS19475	COG2200	EAL domain
BKY56_RS19475	COG2199	diguanylate cyclase activity
BKY56_RS19490	COG3415	Transposase
BKY56_RS19495	COG3415	Transposase
BKY56_RS19530	COG0583	DNA-binding transcription factor activity
BKY56_RS19535	COG0385	Bile acid
BKY56_RS19540	COG3530	Putative quorum-sensing-regulated virulence factor
BKY56_RS19560	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BKY56_RS19595	COG4319	ketosteroid isomerase
BKY56_RS19605	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BKY56_RS19610	COG4208	sulfate ABC transporter
BKY56_RS19615	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BKY56_RS19620	COG4150	thiosulfate binding
BKY56_RS19630	COG2837	iron assimilation
BKY56_RS19650	COG0860	N-Acetylmuramoyl-L-alanine amidase
BKY56_RS19740	COG4810	utilization protein
BKY56_RS19750	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BKY56_RS19755	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BKY56_RS19760	COG5342	invasion associated locus B
BKY56_RS19770	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
BKY56_RS19770	COG0493	'glutamate synthase
BKY56_RS19780	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BKY56_RS19790	COG1393	Belongs to the ArsC family
BKY56_RS19805	COG0400	carboxylic ester hydrolase activity
BKY56_RS19810	COG1444	tRNA N-acetyltransferase activity
BKY56_RS19815	COG2321	neutral zinc metallopeptidase
BKY56_RS19830	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
BKY56_RS19840	COG2716	regulation of RNA biosynthetic process
BKY56_RS19845	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BKY56_RS19850	COG0628	permease
BKY56_RS19855	COG4783	chaperone-mediated protein folding
BKY56_RS19860	COG1393	Belongs to the ArsC family
BKY56_RS19875	COG2233	PERMEase
BKY56_RS19885	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS19900	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BKY56_RS19915	COG2200	EAL domain
BKY56_RS19935	COG0641	radical SAM
BKY56_RS19940	COG3119	arylsulfatase activity
BKY56_RS19950	COG0516	GMP reductase activity
BKY56_RS19950	COG0517	IMP dehydrogenase activity
BKY56_RS19960	COG1645	bacterial-type flagellum-dependent swarming motility
BKY56_RS20000	COG2976	Protein conserved in bacteria
BKY56_RS20035	COG4953	penicillin-binding protein 1C
BKY56_RS20040	COG2373	Large extracellular alpha-helical protein
BKY56_RS20045	COG2897	thiosulfate sulfurtransferase activity
BKY56_RS20065	COG2975	iron-sulfur cluster assembly
BKY56_RS20070	COG0633	Ferredoxin
BKY56_RS20090	COG0822	iron-sulfur transferase activity
BKY56_RS20120	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
BKY56_RS20125	COG3683	transport system, periplasmic component
BKY56_RS20130	COG3711	transcriptional antiterminator
BKY56_RS20135	COG2814	Major facilitator Superfamily
BKY56_RS20140	COG2017	converts alpha-aldose to the beta-anomer
BKY56_RS20145	COG0477	Major facilitator Superfamily
BKY56_RS20145	COG2814	Major facilitator Superfamily
BKY56_RS20150	COG0457	Tetratricopeptide repeat
BKY56_RS20155	COG1940	carbohydrate kinase activity
BKY56_RS20160	COG2259	Doxx family
BKY56_RS20175	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BKY56_RS20175	COG1017	nitric oxide dioxygenase activity
BKY56_RS20180	COG0347	Belongs to the P(II) protein family
BKY56_RS20185	COG2204	response regulator
BKY56_RS20190	COG3170	Tfp pilus assembly protein FimV
BKY56_RS20195	COG2205	protein histidine kinase activity
BKY56_RS20200	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BKY56_RS20200	COG0047	phosphoribosylformylglycinamidine synthase activity
BKY56_RS20215	COG0560	Phosphoserine phosphatase
BKY56_RS20220	COG1737	Transcriptional regulator
BKY56_RS20230	COG3772	lysozyme
BKY56_RS20340	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BKY56_RS20410	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BKY56_RS20420	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BKY56_RS20440	COG0681	Belongs to the peptidase S26 family
BKY56_RS20450	COG3086	response to oxidative stress
BKY56_RS20455	COG3026	antisigma factor binding
BKY56_RS20460	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
BKY56_RS20470	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BKY56_RS20480	COG0513	Belongs to the DEAD box helicase family
BKY56_RS20495	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BKY56_RS20500	COG3118	belongs to the thioredoxin family
BKY56_RS20505	COG3148	PFAM DTW domain containing protein
BKY56_RS20515	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BKY56_RS20520	COG5544	Lipoprotein
BKY56_RS20525	COG0477	Major facilitator Superfamily
BKY56_RS20550	COG0542	response to heat
BKY56_RS20565	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BKY56_RS20570	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BKY56_RS20580	COG1605	Chorismate mutase
BKY56_RS20580	COG0077	Prephenate dehydratase
BKY56_RS20590	COG1605	Chorismate mutase
BKY56_RS20590	COG0287	Prephenate dehydrogenase
BKY56_RS20595	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BKY56_RS20605	COG2199	diguanylate cyclase activity
BKY56_RS20610	COG2885	chlorophyll binding
BKY56_RS20645	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BKY56_RS20650	COG4137	Cytochrome C assembly protein
BKY56_RS20655	COG4536	flavin adenine dinucleotide binding
BKY56_RS20675	COG0497	DNA recombination
BKY56_RS20690	COG2867	negative regulation of translational initiation
BKY56_RS20720	COG2207	Transcriptional regulator
BKY56_RS20720	COG3708	Transcriptional regulator
BKY56_RS20725	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS20760	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS20770	COG0235	Class ii aldolase
BKY56_RS20780	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS20795	COG2197	response regulator
BKY56_RS20800	COG3539	Fimbrial protein
BKY56_RS20830	COG3121	Chaperone
BKY56_RS20835	COG3539	Fimbrial protein
BKY56_RS20845	COG3284	Transcriptional regulator
BKY56_RS20850	COG0583	DNA-binding transcription factor activity
BKY56_RS20860	COG0640	Transcriptional regulator
BKY56_RS20865	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BKY56_RS20880	COG2916	Histone family protein nucleoid-structuring protein H-NS
BKY56_RS20905	COG4575	ribosome binding
BKY56_RS20910	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BKY56_RS20915	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BKY56_RS20920	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BKY56_RS20930	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BKY56_RS20945	COG4176	ABC-type proline glycine betaine transport system permease component
BKY56_RS20955	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
BKY56_RS20965	COG1846	Transcriptional regulator
BKY56_RS20970	COG1566	PFAM secretion protein HlyD family protein
BKY56_RS20975	COG2814	Major facilitator Superfamily
BKY56_RS20980	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BKY56_RS21000	COG1238	metal cluster binding
BKY56_RS21005	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BKY56_RS21010	COG2823	Periplasmic or secreted lipoprotein
BKY56_RS21040	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BKY56_RS21065	COG1546	Belongs to the CinA family
BKY56_RS21075	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BKY56_RS21080	COG1121	(ABC) transporter
BKY56_RS21095	COG2951	lytic endotransglycosylase activity
BKY56_RS21100	COG3730	PTS system glucitol sorbitol-specific
BKY56_RS21105	COG3732	PTS system glucitol sorbitol-specific
BKY56_RS21115	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS21120	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS21125	COG1349	DNA-binding transcription factor activity
BKY56_RS21155	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
BKY56_RS21160	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
BKY56_RS21165	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
BKY56_RS21170	COG1609	Transcriptional regulator
BKY56_RS21175	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS21175	COG1263	PTS System
BKY56_RS21180	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS21190	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
BKY56_RS21200	COG3260	NADH ubiquinone oxidoreductase 20
BKY56_RS21205	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BKY56_RS21210	COG3261	NADH dehydrogenase
BKY56_RS21210	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
BKY56_RS21215	COG0650	Formate hydrogenlyase subunit 4
BKY56_RS21220	COG0651	ATP synthesis coupled electron transport
BKY56_RS21225	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
BKY56_RS21245	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
BKY56_RS21250	COG0298	carbon dioxide binding
BKY56_RS21255	COG0409	Hydrogenase expression formation protein
BKY56_RS21260	COG0309	Hydrogenase expression formation protein (HypE)
BKY56_RS21270	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS21280	COG4580	involved in the transport of maltose and maltodextrins
BKY56_RS21290	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS21295	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS21300	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS21305	COG1447	Phosphotransferase system cellobiose-specific component IIA
BKY56_RS21310	COG1940	carbohydrate kinase activity
BKY56_RS21315	COG1609	Transcriptional regulator
BKY56_RS21320	COG0803	Belongs to the bacterial solute-binding protein 9 family
BKY56_RS21325	COG1121	(ABC) transporter
BKY56_RS21330	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BKY56_RS21335	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BKY56_RS21350	COG0679	Auxin Efflux Carrier
BKY56_RS21370	COG3720	iron ion transport
BKY56_RS21375	COG4558	Periplasmic binding protein
BKY56_RS21380	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS21425	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
BKY56_RS21430	COG0163	prenyltransferase activity
BKY56_RS21455	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BKY56_RS21520	COG2234	aminopeptidase activity
BKY56_RS21535	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BKY56_RS21540	COG1518	maintenance of DNA repeat elements
BKY56_RS21555	COG1857	crispr-associated protein
BKY56_RS21570	COG1203	CRISPR-associated helicase, Cas3
BKY56_RS21590	COG0720	synthase
BKY56_RS21595	COG0602	queuosine metabolic process
BKY56_RS21615	COG3956	TIGRFAM MazG family protein
BKY56_RS21620	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BKY56_RS21630	COG2205	protein histidine kinase activity
BKY56_RS21630	COG3437	response regulator, receiver
BKY56_RS21630	COG4999	Histidine kinase
BKY56_RS21630	COG3850	Histidine kinase
BKY56_RS21635	COG1929	Belongs to the glycerate kinase type-1 family
BKY56_RS21640	COG4948	Mandelate Racemase Muconate Lactonizing
BKY56_RS21645	COG4948	Mandelate Racemase Muconate Lactonizing
BKY56_RS21650	COG2271	Major facilitator Superfamily
BKY56_RS21655	COG0716	FMN binding
BKY56_RS21660	COG0564	pseudouridine synthase activity
BKY56_RS21665	COG3098	single-species biofilm formation
BKY56_RS21680	COG1611	Belongs to the LOG family
BKY56_RS21685	COG0814	amino acid
BKY56_RS21690	COG1760	l-serine dehydratase
BKY56_RS21695	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BKY56_RS21705	COG0477	Major facilitator Superfamily
BKY56_RS21715	COG1464	Belongs to the NlpA lipoprotein family
BKY56_RS21720	COG2011	ABC-type metal ion transport system permease component
BKY56_RS21740	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BKY56_RS21755	COG1454	alcohol dehydrogenase
BKY56_RS21760	COG0235	Class ii aldolase
BKY56_RS21765	COG0738	Major facilitator superfamily
BKY56_RS21785	COG1349	DNA-binding transcription factor activity
BKY56_RS21795	COG2363	Small membrane protein
BKY56_RS21800	COG0583	DNA-binding transcription factor activity
BKY56_RS21810	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BKY56_RS21815	COG2166	iron-sulfur cluster assembly
BKY56_RS21820	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BKY56_RS21825	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
BKY56_RS21860	COG2885	chlorophyll binding
BKY56_RS22080	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
BKY56_RS22110	COG1454	alcohol dehydrogenase
BKY56_RS22110	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS22115	COG4656	Part of a membrane complex involved in electron transport
BKY56_RS22145	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BKY56_RS22150	COG0860	N-Acetylmuramoyl-L-alanine amidase
BKY56_RS22155	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BKY56_RS22155	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BKY56_RS22165	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BKY56_RS22170	COG1074	ATP-dependent DNA helicase activity
BKY56_RS22175	COG1025	Belongs to the peptidase M16 family
BKY56_RS22180	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BKY56_RS22185	COG4967	type IV pilus modification protein PilV
BKY56_RS22195	COG4795	General secretion pathway protein
BKY56_RS22200	COG2165	general secretion pathway protein
BKY56_RS22230	COG0861	Integral membrane protein TerC family
BKY56_RS22240	COG0667	Aldo Keto reductase
BKY56_RS22265	COG1609	Transcriptional regulator
BKY56_RS22275	COG2186	Transcriptional regulator
BKY56_RS22280	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS22285	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS22290	COG1609	Transcriptional regulator
BKY56_RS22300	COG0583	DNA-binding transcription factor activity
BKY56_RS22305	COG1794	racemase activity, acting on amino acids and derivatives
BKY56_RS22310	COG1917	Cupin 2, conserved barrel domain protein
BKY56_RS22315	COG1175	transmembrane transport
BKY56_RS22320	COG0395	ABC-type sugar transport system, permease component
BKY56_RS22325	COG3842	ATPase activity
BKY56_RS22355	COG2814	Major facilitator Superfamily
BKY56_RS22360	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS22365	COG0823	Involved in the tonB-independent uptake of proteins
BKY56_RS22375	COG0183	Belongs to the thiolase family
BKY56_RS22390	COG0814	amino acid
BKY56_RS22395	COG0667	Aldo Keto reductase
BKY56_RS22445	COG0697	spore germination
BKY56_RS22450	COG1846	Transcriptional regulator
BKY56_RS22455	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
BKY56_RS22465	COG0582	viral genome integration into host DNA
BKY56_RS22470	COG4974	Belongs to the 'phage' integrase family
BKY56_RS22480	COG3539	Fimbrial protein
BKY56_RS22485	COG3121	Chaperone
BKY56_RS22490	COG3188	usher protein
BKY56_RS22495	COG3539	Fimbrial protein
BKY56_RS22500	COG3539	Fimbrial protein
BKY56_RS22505	COG3539	Fimbrial protein
BKY56_RS22515	COG2388	GCN5-related N-acetyl-transferase
BKY56_RS22520	COG3592	Divergent 4Fe-4S mono-cluster
BKY56_RS22535	COG1289	transmembrane transporter activity
BKY56_RS22540	COG1538	Outer membrane efflux protein
BKY56_RS22555	COG1393	Belongs to the ArsC family
BKY56_RS22560	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BKY56_RS22600	COG0667	Aldo Keto reductase
BKY56_RS22615	COG2814	Major facilitator Superfamily
BKY56_RS22625	COG4942	peptidase
BKY56_RS22650	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BKY56_RS22660	COG4974	Belongs to the 'phage' integrase family
BKY56_RS22665	COG0716	FMN binding
BKY56_RS22675	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BKY56_RS22685	COG1272	protein, Hemolysin III
BKY56_RS22695	COG1737	Transcriptional regulator
BKY56_RS22700	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS22720	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BKY56_RS22730	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS22750	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BKY56_RS22760	COG0006	proline dipeptidase activity
BKY56_RS22780	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BKY56_RS22785	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BKY56_RS22800	COG2968	Membrane
BKY56_RS22810	COG0668	transmembrane transport
BKY56_RS22815	COG0191	fructose-bisphosphate aldolase activity
BKY56_RS22830	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BKY56_RS22835	COG0501	Belongs to the peptidase M48B family
BKY56_RS22855	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
BKY56_RS22860	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS22890	COG1414	Transcriptional regulator
BKY56_RS22895	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS22910	COG2146	nitrite reductase [NAD(P)H] activity
BKY56_RS22950	COG2814	Major facilitator Superfamily
BKY56_RS22960	COG2356	endonuclease I
BKY56_RS22965	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BKY56_RS22990	COG2805	Type II/IV secretion system protein
BKY56_RS22995	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BKY56_RS23000	COG0762	integral membrane protein
BKY56_RS23015	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BKY56_RS23020	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BKY56_RS23025	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
BKY56_RS23025	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
BKY56_RS23040	COG3171	Protein conserved in bacteria
BKY56_RS23050	COG1194	a g-specific adenine glycosylase
BKY56_RS23065	COG2211	Major facilitator Superfamily
BKY56_RS23070	COG1982	Orn Lys Arg decarboxylase major
BKY56_RS23080	COG1811	Na channel or pump
BKY56_RS23095	COG0626	cystathionine gamma-synthase activity
BKY56_RS23120	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BKY56_RS23125	COG0754	glutathionylspermidine amidase activity
BKY56_RS23135	COG0625	glutathione transferase activity
BKY56_RS23160	COG2211	Major facilitator Superfamily
BKY56_RS23165	COG0848	biopolymer transport protein
BKY56_RS23180	COG0626	cystathionine gamma-synthase activity
BKY56_RS23185	COG0586	Pfam SNARE associated Golgi protein
BKY56_RS23190	COG2207	Transcriptional regulator
BKY56_RS23195	COG1979	alcohol dehydrogenase
BKY56_RS23200	COG0656	L-ascorbic acid biosynthetic process
BKY56_RS23210	COG1032	radical SAM domain protein
BKY56_RS23215	COG2132	Multicopper oxidase
BKY56_RS23220	COG0204	Acyl-transferase
BKY56_RS23225	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BKY56_RS23230	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
BKY56_RS23235	COG3111	PFAM Bacterial OB fold (BOF) protein
BKY56_RS23245	COG0642	Histidine kinase
BKY56_RS23250	COG2249	NAD(P)H dehydrogenase (quinone) activity
BKY56_RS23255	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
BKY56_RS23265	COG3150	esterase
BKY56_RS23270	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BKY56_RS23275	COG3151	Protein conserved in bacteria
BKY56_RS23280	COG0494	nUDIX hydrolase
BKY56_RS23295	COG0754	glutathionylspermidine amidase activity
BKY56_RS23300	COG3384	dioxygenase
BKY56_RS23315	COG2960	long-chain fatty acid transporting porin activity
BKY56_RS23335	COG3025	triphosphatase activity
BKY56_RS23340	COG4991	sh3 domain protein
BKY56_RS23355	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BKY56_RS23420	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BKY56_RS23425	COG0358	DNA primase activity
BKY56_RS23430	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BKY56_RS23455	COG2197	response regulator
BKY56_RS23460	COG2205	protein histidine kinase activity
BKY56_RS23460	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS23460	COG0784	Response regulator, receiver
BKY56_RS23460	COG2198	Histidine kinase
BKY56_RS23470	COG3247	response to pH
BKY56_RS23545	COG2376	Dihydroxyacetone kinase
BKY56_RS23550	COG1461	Dihydroxyacetone kinase
BKY56_RS23565	COG2375	cellular response to nickel ion
BKY56_RS23570	COG1695	Transcriptional regulator
BKY56_RS23585	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BKY56_RS23590	COG1609	Transcriptional regulator
BKY56_RS23595	COG3250	beta-galactosidase activity
BKY56_RS23600	COG2731	YhcH YjgK YiaL family protein
BKY56_RS23605	COG0531	amino acid
BKY56_RS23610	COG0531	amino acid
BKY56_RS23620	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BKY56_RS23620	COG3408	Glycogen debranching enzyme
BKY56_RS23665	COG0446	pyridine nucleotide-disulphide oxidoreductase
BKY56_RS23665	COG1902	pentaerythritol trinitrate reductase activity
BKY56_RS23685	COG1451	nucleotide metabolic process
BKY56_RS23690	COG0673	inositol 2-dehydrogenase activity
BKY56_RS23695	COG0861	Integral membrane protein TerC family
BKY56_RS23710	COG2721	sulfolactate sulfo-lyase activity
BKY56_RS23720	COG2271	Major facilitator Superfamily
BKY56_RS23725	COG2186	Transcriptional regulator
BKY56_RS23730	COG0586	Pfam SNARE associated Golgi protein
BKY56_RS23740	COG1422	Protein of unknown function (DUF1090)
BKY56_RS23745	COG4575	ribosome binding
BKY56_RS23750	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
BKY56_RS23760	COG2259	Doxx family
BKY56_RS23765	COG0435	Glutathione S-transferase
BKY56_RS23770	COG3152	Membrane
BKY56_RS23775	COG0583	DNA-binding transcription factor activity
BKY56_RS23780	COG1741	Belongs to the pirin family
BKY56_RS23800	COG1929	Belongs to the glycerate kinase type-1 family
BKY56_RS23805	COG2084	Dehydrogenase
BKY56_RS23815	COG2271	Major facilitator Superfamily
BKY56_RS23820	COG2721	sulfolactate sulfo-lyase activity
BKY56_RS23825	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BKY56_RS23830	COG1349	DNA-binding transcription factor activity
BKY56_RS23840	COG1105	Belongs to the carbohydrate kinase PfkB family
BKY56_RS23845	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BKY56_RS23845	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BKY56_RS23845	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS23850	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS23850	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS23860	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS23865	COG3414	Phosphotransferase system galactitol-specific IIB component
BKY56_RS23870	COG3775	system Galactitol-specific IIC component
BKY56_RS23875	COG1063	alcohol dehydrogenase
BKY56_RS23890	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BKY56_RS23910	COG2823	Periplasmic or secreted lipoprotein
BKY56_RS23915	COG0701	Predicted permease
BKY56_RS23920	COG0702	epimerase
BKY56_RS23925	COG0693	protein deglycase activity
BKY56_RS23940	COG3153	acetyltransferase
BKY56_RS23945	COG3154	lipid carrier protein
BKY56_RS23950	COG0826	peptidase U32
BKY56_RS23955	COG0826	peptidase U32
BKY56_RS23960	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BKY56_RS23965	COG0814	amino acid
BKY56_RS24015	COG0195	Participates in both transcription termination and antitermination
BKY56_RS24055	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BKY56_RS24065	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BKY56_RS24070	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BKY56_RS24080	COG1534	Rna-binding protein
BKY56_RS24090	COG2027	D-alanyl-D-alanine carboxypeptidase
BKY56_RS24100	COG0697	spore germination
BKY56_RS24115	COG0142	geranyltranstransferase activity
BKY56_RS24120	COG3423	Transcriptional regulator
BKY56_RS24130	COG5007	Belongs to the BolA IbaG family
BKY56_RS24135	COG3113	response to antibiotic
BKY56_RS24140	COG2854	intermembrane phospholipid transfer
BKY56_RS24145	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BKY56_RS24150	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BKY56_RS24155	COG1127	ABC transporter
BKY56_RS24165	COG0530	calcium, potassium:sodium antiporter activity
BKY56_RS24175	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BKY56_RS24180	COG3117	lipopolysaccharide transmembrane transporter activity
BKY56_RS24185	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BKY56_RS24190	COG1137	ATPase activity
BKY56_RS24195	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BKY56_RS24200	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BKY56_RS24205	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS24215	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BKY56_RS24220	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BKY56_RS24225	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
BKY56_RS24230	COG0784	Response regulator, receiver
BKY56_RS24230	COG5002	protein histidine kinase activity
BKY56_RS24230	COG2198	Histidine kinase
BKY56_RS24235	COG1312	Catalyzes the dehydration of D-mannonate
BKY56_RS24240	COG1063	alcohol dehydrogenase
BKY56_RS24245	COG2271	Major facilitator Superfamily
BKY56_RS24250	COG1242	4 iron, 4 sulfur cluster binding
BKY56_RS24260	COG0067	glutamate synthase
BKY56_RS24260	COG0069	glutamate synthase activity
BKY56_RS24260	COG0070	glutamate synthase
BKY56_RS24265	COG0493	'glutamate synthase
BKY56_RS24275	COG2969	positive regulation of protein catabolic process
BKY56_RS24280	COG0625	glutathione transferase activity
BKY56_RS24300	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BKY56_RS24305	COG3105	Protein conserved in bacteria
BKY56_RS24310	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BKY56_RS24315	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BKY56_RS24340	COG2732	(Barnase) inhibitor
BKY56_RS24345	COG1289	transmembrane transporter activity
BKY56_RS24360	COG0583	DNA-binding transcription factor activity
BKY56_RS24365	COG0312	modulator of DNA gyrase
BKY56_RS24370	COG3164	Protein of unknown function
BKY56_RS24375	COG1530	ribonuclease E activity
BKY56_RS24385	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BKY56_RS24390	COG1792	Involved in formation and maintenance of cell shape
BKY56_RS24395	COG1077	Cell shape determining protein MreB Mrl
BKY56_RS24405	COG2199	diguanylate cyclase activity
BKY56_RS24405	COG2200	EAL domain
BKY56_RS24435	COG0511	ligase activity, forming carbon-carbon bonds
BKY56_RS24440	COG0439	Biotin carboxylase
BKY56_RS24445	COG3924	membrane
BKY56_RS24450	COG4145	pantothenate transmembrane transporter activity
BKY56_RS24475	COG1309	transcriptional regulator
BKY56_RS24480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BKY56_RS24485	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BKY56_RS24525	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BKY56_RS24545	COG0551	DNA topoisomerase type I activity
BKY56_RS24555	COG0758	DNA mediated transformation
BKY56_RS24585	COG3036	rescue of stalled ribosome
BKY56_RS24590	COG0789	Transcriptional regulator
BKY56_RS24605	COG0202	RNA polymerase activity
BKY56_RS24630	COG0201	protein transport
BKY56_RS24695	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BKY56_RS24710	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BKY56_RS24735	COG0051	transcription antitermination factor activity, RNA binding
BKY56_RS24795	COG2964	Protein conserved in bacteria
BKY56_RS24800	COG0545	Peptidyl-prolyl cis-trans isomerase
BKY56_RS24810	COG1047	Peptidyl-prolyl cis-trans
BKY56_RS24815	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
BKY56_RS24835	COG0488	(ABC) transporter
BKY56_RS24845	COG0429	hydrolase of the alpha beta-hydrolase fold
BKY56_RS24855	COG3954	Phosphoribulokinase
BKY56_RS24860	COG1765	OsmC-like protein
BKY56_RS24875	COG1289	transmembrane transporter activity
BKY56_RS24880	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BKY56_RS24905	COG0738	Major facilitator superfamily
BKY56_RS24910	COG0402	S-adenosylhomocysteine deaminase activity
BKY56_RS24915	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BKY56_RS24940	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BKY56_RS24945	COG0338	D12 class N6 adenine-specific DNA methyltransferase
BKY56_RS24950	COG3266	domain, Protein
BKY56_RS24970	COG4796	Type ii and iii secretion system protein
BKY56_RS24995	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BKY56_RS25000	COG0494	nUDIX hydrolase
BKY56_RS25010	COG1011	Hydrolase
BKY56_RS25015	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BKY56_RS25040	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BKY56_RS25045	COG2183	response to ionizing radiation
BKY56_RS25050	COG1918	ferrous iron import across plasma membrane
BKY56_RS25075	COG1040	competence protein
BKY56_RS25085	COG2610	gluconate transmembrane transporter activity
BKY56_RS25090	COG1640	4-alpha-glucanotransferase
BKY56_RS25095	COG0058	SHG alpha-glucan phosphorylase activity
BKY56_RS25110	COG1349	DNA-binding transcription factor activity
BKY56_RS25125	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BKY56_RS25130	COG0058	SHG alpha-glucan phosphorylase activity
BKY56_RS25155	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BKY56_RS25165	COG2610	gluconate transmembrane transporter activity
BKY56_RS25170	COG3265	gluconokinase activity
BKY56_RS25175	COG1609	Transcriptional regulator
BKY56_RS25180	COG1741	Belongs to the pirin family
BKY56_RS25185	COG0673	inositol 2-dehydrogenase activity
BKY56_RS25195	COG1247	-acetyltransferase
BKY56_RS25200	COG0405	Gamma-glutamyltransferase
BKY56_RS25210	COG0584	glycerophosphoryl diester phosphodiesterase
BKY56_RS25260	COG0559	Belongs to the binding-protein-dependent transport system permease family
BKY56_RS25265	COG0683	leucine binding
BKY56_RS25280	COG0683	leucine binding
BKY56_RS25290	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BKY56_RS25305	COG2177	Part of the ABC transporter FtsEX involved in
BKY56_RS25310	COG2884	Cell division ATP-binding protein ftsE
BKY56_RS25315	COG0552	protein localization to endoplasmic reticulum
BKY56_RS25320	COG0742	ribosomal rna small subunit methyltransferase
BKY56_RS25325	COG3776	membrane
BKY56_RS25335	COG3714	YhhN family
BKY56_RS25350	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BKY56_RS25360	COG0477	Major facilitator Superfamily
BKY56_RS25365	COG0628	permease
BKY56_RS25405	COG3479	Phenolic acid decarboxylase
BKY56_RS25420	COG0747	negative chemotaxis
BKY56_RS25425	COG0601	transmembrane transport
BKY56_RS25430	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BKY56_RS25440	COG1124	(ABC) transporter
BKY56_RS25450	COG2239	Acts as a magnesium transporter
BKY56_RS25455	COG2081	HI0933 family
BKY56_RS25460	COG0306	phosphate transporter
BKY56_RS25470	COG0589	response to stress
BKY56_RS25490	COG0671	phosphoesterase, PA-phosphatase related
BKY56_RS25495	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BKY56_RS25500	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BKY56_RS25510	COG1454	alcohol dehydrogenase
BKY56_RS25520	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BKY56_RS25525	COG1028	Short-chain dehydrogenase reductase Sdr
BKY56_RS25530	COG0583	DNA-binding transcription factor activity
BKY56_RS25535	COG1295	ribonuclease BN
BKY56_RS25540	COG0477	Major facilitator Superfamily
BKY56_RS25545	COG2982	Protein involved in outer membrane biogenesis
BKY56_RS25560	COG0612	Peptidase, M16
BKY56_RS25575	COG2200	EAL domain
BKY56_RS25575	COG2199	diguanylate cyclase activity
BKY56_RS25580	COG0457	Tetratricopeptide repeat
BKY56_RS25580	COG3118	belongs to the thioredoxin family
BKY56_RS25585	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BKY56_RS25590	COG1215	transferase activity, transferring glycosyl groups
BKY56_RS25620	COG2194	sulfuric ester hydrolase activity
BKY56_RS25635	COG0457	Tetratricopeptide repeat
BKY56_RS25640	COG1215	transferase activity, transferring glycosyl groups
BKY56_RS25650	COG2894	cell division
BKY56_RS25665	COG4608	Belongs to the ABC transporter superfamily
BKY56_RS25670	COG0444	Belongs to the ABC transporter superfamily
BKY56_RS25675	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BKY56_RS25680	COG0601	transmembrane transport
BKY56_RS25685	COG0747	negative chemotaxis
BKY56_RS25715	COG2223	nitrite transmembrane transporter activity
BKY56_RS25720	COG5571	outer membrane autotransporter
BKY56_RS25725	COG2818	Glycosylase
BKY56_RS25730	COG0456	acetyltransferase
BKY56_RS25735	COG0243	molybdopterin cofactor binding
BKY56_RS25745	COG1609	Transcriptional regulator
BKY56_RS25755	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BKY56_RS25780	COG2814	Major facilitator Superfamily
BKY56_RS25785	COG2944	sequence-specific DNA binding
BKY56_RS25790	COG1278	Cold shock
BKY56_RS25795	COG0488	(ABC) transporter
BKY56_RS25825	COG3274	enterobacterial common antigen metabolic process
BKY56_RS25830	COG4682	membrane
BKY56_RS25835	COG4682	membrane
BKY56_RS25855	COG4213	ABC transporter substrate-binding protein
BKY56_RS25865	COG4214	carbohydrate transport
BKY56_RS25870	COG1609	Transcriptional regulator
BKY56_RS25870	COG2207	Transcriptional regulator
BKY56_RS25875	COG2992	FlgJ-related protein
BKY56_RS25885	COG0366	Alpha amylase catalytic
BKY56_RS25890	COG3977	Valine--pyruvate aminotransferase
BKY56_RS25895	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
BKY56_RS25900	COG1414	Transcriptional regulator
BKY56_RS25905	COG3276	selenocysteine insertion sequence binding
BKY56_RS25915	COG0625	glutathione transferase activity
BKY56_RS25920	COG1566	PFAM secretion protein HlyD family protein
BKY56_RS25940	COG3722	fumarate hydratase activity
BKY56_RS25960	COG2186	Transcriptional regulator
BKY56_RS25970	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BKY56_RS25990	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BKY56_RS25995	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BKY56_RS26005	COG4942	peptidase
BKY56_RS26010	COG2861	carbohydrate metabolic process
BKY56_RS26015	COG0463	Glycosyl transferase, family 2
BKY56_RS26025	COG0156	8-amino-7-oxononanoate synthase activity
BKY56_RS26040	COG0859	PFAM glycosyl transferase family 9
BKY56_RS26065	COG0859	PFAM glycosyl transferase family 9
BKY56_RS26075	COG0438	transferase activity, transferring glycosyl groups
BKY56_RS26080	COG1216	Glycosyl transferase, family 2
BKY56_RS26085	COG1519	Transferase
BKY56_RS26120	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BKY56_RS26145	COG0842	Transport permease protein
BKY56_RS26150	COG1131	(ABC) transporter
BKY56_RS26170	COG1561	YicC-like family, N-terminal region
BKY56_RS26175	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
BKY56_RS26180	COG2169	Transcriptional regulator
BKY56_RS26180	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BKY56_RS26190	COG2860	membrane
BKY56_RS26210	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BKY56_RS26215	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BKY56_RS26220	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BKY56_RS26225	COG1494	fructose-1,6-bisphosphatase
BKY56_RS26235	COG3152	Membrane
BKY56_RS26260	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BKY56_RS26280	COG0786	glutamate:sodium symporter activity
BKY56_RS26285	COG2233	PERMEase
BKY56_RS26290	COG2982	Protein involved in outer membrane biogenesis
BKY56_RS26295	COG1263	PTS System
BKY56_RS26295	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS26300	COG1486	melibiose metabolic process
BKY56_RS26310	COG1501	Belongs to the glycosyl hydrolase 31 family
BKY56_RS26315	COG2211	Major facilitator Superfamily
BKY56_RS26350	COG1064	alcohol dehydrogenase
BKY56_RS26360	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
BKY56_RS26375	COG1464	Belongs to the NlpA lipoprotein family
BKY56_RS26400	COG0583	DNA-binding transcription factor activity
BKY56_RS26435	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BKY56_RS26445	COG2814	Major facilitator Superfamily
BKY56_RS26455	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BKY56_RS26455	COG1263	PTS System
BKY56_RS26460	COG0697	spore germination
BKY56_RS26475	COG2828	Protein conserved in bacteria
BKY56_RS26480	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BKY56_RS26485	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BKY56_RS26490	COG0583	DNA-binding transcription factor activity
BKY56_RS26495	COG3384	dioxygenase
BKY56_RS26505	COG1609	Transcriptional regulator
BKY56_RS26515	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS26515	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BKY56_RS26520	COG1447	Phosphotransferase system cellobiose-specific component IIA
BKY56_RS26525	COG4580	involved in the transport of maltose and maltodextrins
BKY56_RS26550	COG2188	Transcriptional regulator
BKY56_RS26595	COG2271	Major facilitator Superfamily
BKY56_RS26605	COG2197	response regulator
BKY56_RS26610	COG0440	acetolactate synthase activity
BKY56_RS26615	COG0028	Belongs to the TPP enzyme family
BKY56_RS26640	COG2814	Major facilitator Superfamily
BKY56_RS26645	COG0583	DNA-binding transcription factor activity
BKY56_RS26650	COG2610	gluconate transmembrane transporter activity
BKY56_RS26670	COG2149	membrane
BKY56_RS26685	COG2188	Transcriptional regulator
BKY56_RS26695	COG3645	SOS response
BKY56_RS26710	COG5645	(Lipo)protein
BKY56_RS26715	COG0823	Involved in the tonB-independent uptake of proteins
BKY56_RS26720	COG2271	Major facilitator Superfamily
BKY56_RS26730	COG0800	Aldolase
BKY56_RS26735	COG3734	2-keto-3-deoxy-galactonokinase
BKY56_RS26740	COG2186	Transcriptional regulator
BKY56_RS26755	COG0561	phosphatase activity
BKY56_RS26760	COG0187	DNA topoisomerase II activity
BKY56_RS26795	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BKY56_RS26830	COG2091	lysine biosynthetic process via aminoadipic acid
BKY56_RS26835	COG0431	NADPH-dependent FMN reductase
BKY56_RS26840	COG2252	PERMEase
BKY56_RS26850	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BKY56_RS26855	COG0363	glucosamine-6-phosphate deaminase activity
BKY56_RS26860	COG2382	esterase
BKY56_RS26875	COG0704	Plays a role in the regulation of phosphate uptake
BKY56_RS26880	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BKY56_RS26885	COG0581	inorganic phosphate transmembrane transporter activity
BKY56_RS26890	COG0573	inorganic phosphate transmembrane transporter activity
BKY56_RS26895	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BKY56_RS26900	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BKY56_RS26950	COG3312	ion transport
BKY56_RS26965	COG0500	methyltransferase
BKY56_RS26980	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BKY56_RS26990	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
BKY56_RS27045	COG0500	methyltransferase
BKY56_RS27080	COG2382	esterase
BKY56_RS27095	COG1475	DNA binding
BKY56_RS27100	COG3969	phosphoadenosine phosphosulfate
BKY56_RS27115	COG1595	DNA-templated transcription, initiation
BKY56_RS27125	COG4772	TonB-dependent receptor
BKY56_RS27130	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
BKY56_RS27145	COG5642	Protein of unknown function (DUF2384)
BKY56_RS27150	COG5654	RES domain protein
BKY56_RS27185	COG3547	Transposase (IS116 IS110 IS902 family)
BKY56_RS27195	COG4215	(ABC) transporter
BKY56_RS27205	COG1126	abc transporter atp-binding protein
BKY56_RS27220	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BKY56_RS27270	COG1169	isochorismate synthase
BKY56_RS27275	COG2814	Major facilitator Superfamily
BKY56_RS27280	COG1132	(ABC) transporter
BKY56_RS27295	COG2226	methyltransferase
BKY56_RS27295	COG3433	isochorismatase activity
BKY56_RS27295	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BKY56_RS27315	COG1021	2,3-dihydroxybenzoate-AMP ligase
BKY56_RS27320	COG4771	TonB-dependent receptor
BKY56_RS27340	COG2423	ornithine cyclodeaminase activity
BKY56_RS27350	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BKY56_RS27355	COG3138	arginine N-succinyltransferase
BKY56_RS27360	COG1012	belongs to the aldehyde dehydrogenase family
BKY56_RS27365	COG2988	succinylglutamate desuccinylase activity
BKY56_RS27370	COG4215	(ABC) transporter
BKY56_RS27375	COG4160	amino acid transport
BKY56_RS27380	COG4598	ABC transporter
BKY56_RS27385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BKY56_RS27390	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BKY56_RS27415	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BKY56_RS27465	COG2814	Major facilitator Superfamily
BKY56_RS27470	COG0583	DNA-binding transcription factor activity
BKY56_RS27475	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS27485	COG2223	nitrite transmembrane transporter activity
BKY56_RS27500	COG2723	6-phospho-beta-galactosidase activity
BKY56_RS27520	COG0778	Nitroreductase
BKY56_RS27530	COG1733	regulation of RNA biosynthetic process
BKY56_RS27535	COG0702	epimerase
BKY56_RS27625	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BKY56_RS27760	COG2801	Transposase and inactivated derivatives
BKY56_RS27770	COG2801	Transposase and inactivated derivatives
BKY56_RS27775	COG2963	transposase activity
BKY56_RS27790	COG5654	RES domain protein
BKY56_RS27795	COG5642	Protein of unknown function (DUF2384)
BKY56_RS28005	COG4316	Uncharacterized protein conserved in bacteria (DUF2251)
BKY56_RS28025	COG4245	von Willebrand factor, type A
BKY56_RS28030	COG4245	von Willebrand factor, type A
BKY56_RS28040	COG4245	von Willebrand factor, type A
BKY56_RS28060	COG1358	cellular component organization or biogenesis
BKY56_RS28165	COG1522	sequence-specific DNA binding
BKY56_RS28245	COG1956	GAF domain-containing protein
BKY56_RS28250	COG1956	GAF domain-containing protein
BKY56_RS28365	COG0523	cobalamin synthesis protein