locus-tag	class	description
D0896_RS00020	COG0187	DNA topoisomerase II activity
D0896_RS00025	COG0561	phosphatase activity
D0896_RS00040	COG2186	Transcriptional regulator
D0896_RS00045	COG3734	2-keto-3-deoxy-galactonokinase
D0896_RS00050	COG0800	Aldolase
D0896_RS00060	COG2271	Major facilitator Superfamily
D0896_RS00065	COG0823	Involved in the tonB-independent uptake of proteins
D0896_RS00070	COG5645	(Lipo)protein
D0896_RS00095	COG2188	Transcriptional regulator
D0896_RS00110	COG2149	membrane
D0896_RS00130	COG2610	gluconate transmembrane transporter activity
D0896_RS00135	COG0583	DNA-binding transcription factor activity
D0896_RS00140	COG2814	Major facilitator Superfamily
D0896_RS00165	COG0028	Belongs to the TPP enzyme family
D0896_RS00170	COG0440	acetolactate synthase activity
D0896_RS00175	COG2197	response regulator
D0896_RS00185	COG2271	Major facilitator Superfamily
D0896_RS00230	COG2188	Transcriptional regulator
D0896_RS00255	COG4580	involved in the transport of maltose and maltodextrins
D0896_RS00260	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0896_RS00265	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS00265	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS00275	COG1609	Transcriptional regulator
D0896_RS00285	COG3384	dioxygenase
D0896_RS00290	COG0583	DNA-binding transcription factor activity
D0896_RS00295	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D0896_RS00300	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
D0896_RS00305	COG2828	Protein conserved in bacteria
D0896_RS00320	COG0697	spore germination
D0896_RS00325	COG1263	PTS System
D0896_RS00325	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0896_RS00335	COG2814	Major facilitator Superfamily
D0896_RS00345	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0896_RS00380	COG0583	DNA-binding transcription factor activity
D0896_RS00405	COG1464	Belongs to the NlpA lipoprotein family
D0896_RS00420	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
D0896_RS00430	COG1064	alcohol dehydrogenase
D0896_RS00460	COG2211	Major facilitator Superfamily
D0896_RS00465	COG1501	Belongs to the glycosyl hydrolase 31 family
D0896_RS00475	COG1486	melibiose metabolic process
D0896_RS00480	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0896_RS00480	COG1263	PTS System
D0896_RS00485	COG2982	Protein involved in outer membrane biogenesis
D0896_RS00490	COG2233	PERMEase
D0896_RS00495	COG0786	glutamate:sodium symporter activity
D0896_RS00515	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
D0896_RS00540	COG3152	Membrane
D0896_RS00550	COG1494	fructose-1,6-bisphosphatase
D0896_RS00555	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
D0896_RS00560	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0896_RS00565	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D0896_RS00585	COG2860	membrane
D0896_RS00595	COG2169	Transcriptional regulator
D0896_RS00595	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D0896_RS00600	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
D0896_RS00605	COG1561	YicC-like family, N-terminal region
D0896_RS00625	COG1131	(ABC) transporter
D0896_RS00630	COG0842	Transport permease protein
D0896_RS00660	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D0896_RS00695	COG1519	Transferase
D0896_RS00700	COG1216	Glycosyl transferase, family 2
D0896_RS00705	COG0438	transferase activity, transferring glycosyl groups
D0896_RS00715	COG0859	PFAM glycosyl transferase family 9
D0896_RS00740	COG0859	PFAM glycosyl transferase family 9
D0896_RS00755	COG0156	8-amino-7-oxononanoate synthase activity
D0896_RS00765	COG0463	Glycosyl transferase, family 2
D0896_RS00770	COG2861	carbohydrate metabolic process
D0896_RS00775	COG4942	peptidase
D0896_RS00785	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D0896_RS00790	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D0896_RS00810	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
D0896_RS00820	COG2186	Transcriptional regulator
D0896_RS00840	COG3722	fumarate hydratase activity
D0896_RS00860	COG0625	glutathione transferase activity
D0896_RS00870	COG3276	selenocysteine insertion sequence binding
D0896_RS00875	COG0235	Class ii aldolase
D0896_RS00880	COG3623	hexulose-6-phosphate isomerase
D0896_RS00885	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
D0896_RS00890	COG1070	Carbohydrate kinase
D0896_RS00895	COG2271	Major facilitator Superfamily
D0896_RS00905	COG2731	YhcH YjgK YiaL family protein
D0896_RS00920	COG1414	Transcriptional regulator
D0896_RS00925	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0896_RS00930	COG3977	Valine--pyruvate aminotransferase
D0896_RS00935	COG0366	Alpha amylase catalytic
D0896_RS00945	COG2992	FlgJ-related protein
D0896_RS00950	COG2207	Transcriptional regulator
D0896_RS00950	COG1609	Transcriptional regulator
D0896_RS00955	COG4214	carbohydrate transport
D0896_RS00965	COG4213	ABC transporter substrate-binding protein
D0896_RS00985	COG4682	membrane
D0896_RS00990	COG4682	membrane
D0896_RS00995	COG3274	enterobacterial common antigen metabolic process
D0896_RS01025	COG1278	Cold shock
D0896_RS01030	COG2944	sequence-specific DNA binding
D0896_RS01035	COG2814	Major facilitator Superfamily
D0896_RS01060	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0896_RS01070	COG1609	Transcriptional regulator
D0896_RS01075	COG2885	chlorophyll binding
D0896_RS01080	COG0243	molybdopterin cofactor binding
D0896_RS01085	COG0456	acetyltransferase
D0896_RS01090	COG2818	Glycosylase
D0896_RS01095	COG5571	outer membrane autotransporter
D0896_RS01100	COG2223	nitrite transmembrane transporter activity
D0896_RS01140	COG0747	negative chemotaxis
D0896_RS01145	COG0601	transmembrane transport
D0896_RS01150	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS01155	COG0444	Belongs to the ABC transporter superfamily
D0896_RS01160	COG4608	Belongs to the ABC transporter superfamily
D0896_RS01175	COG2894	cell division
D0896_RS01185	COG1215	transferase activity, transferring glycosyl groups
D0896_RS01190	COG0457	Tetratricopeptide repeat
D0896_RS01205	COG2194	sulfuric ester hydrolase activity
D0896_RS01235	COG1215	transferase activity, transferring glycosyl groups
D0896_RS01240	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
D0896_RS01245	COG0457	Tetratricopeptide repeat
D0896_RS01245	COG3118	belongs to the thioredoxin family
D0896_RS01250	COG2199	diguanylate cyclase activity
D0896_RS01250	COG2200	EAL domain
D0896_RS01265	COG0612	Peptidase, M16
D0896_RS01280	COG2982	Protein involved in outer membrane biogenesis
D0896_RS01285	COG0477	Major facilitator Superfamily
D0896_RS01290	COG1295	ribonuclease BN
D0896_RS01295	COG0583	DNA-binding transcription factor activity
D0896_RS01300	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS01315	COG1454	alcohol dehydrogenase
D0896_RS01325	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D0896_RS01330	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
D0896_RS01335	COG0671	phosphoesterase, PA-phosphatase related
D0896_RS01355	COG0589	response to stress
D0896_RS01365	COG0306	phosphate transporter
D0896_RS01370	COG2081	HI0933 family
D0896_RS01400	COG1124	(ABC) transporter
D0896_RS01410	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS01415	COG0601	transmembrane transport
D0896_RS01420	COG0747	negative chemotaxis
D0896_RS01435	COG3479	Phenolic acid decarboxylase
D0896_RS01475	COG0628	permease
D0896_RS01480	COG0477	Major facilitator Superfamily
D0896_RS01490	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
D0896_RS01505	COG3714	YhhN family
D0896_RS01515	COG3776	membrane
D0896_RS01520	COG0742	ribosomal rna small subunit methyltransferase
D0896_RS01525	COG0552	protein localization to endoplasmic reticulum
D0896_RS01530	COG2884	Cell division ATP-binding protein ftsE
D0896_RS01535	COG2177	Part of the ABC transporter FtsEX involved in
D0896_RS01550	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D0896_RS01560	COG0683	leucine binding
D0896_RS01575	COG0683	leucine binding
D0896_RS01580	COG0559	Belongs to the binding-protein-dependent transport system permease family
D0896_RS01630	COG0584	glycerophosphoryl diester phosphodiesterase
D0896_RS01640	COG0405	Gamma-glutamyltransferase
D0896_RS01645	COG1247	-acetyltransferase
D0896_RS01655	COG0673	inositol 2-dehydrogenase activity
D0896_RS01660	COG1741	Belongs to the pirin family
D0896_RS01665	COG1609	Transcriptional regulator
D0896_RS01670	COG3265	gluconokinase activity
D0896_RS01675	COG2610	gluconate transmembrane transporter activity
D0896_RS01685	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D0896_RS01710	COG0058	SHG alpha-glucan phosphorylase activity
D0896_RS01725	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D0896_RS01740	COG1349	DNA-binding transcription factor activity
D0896_RS01755	COG0058	SHG alpha-glucan phosphorylase activity
D0896_RS01760	COG1640	4-alpha-glucanotransferase
D0896_RS01765	COG2610	gluconate transmembrane transporter activity
D0896_RS01775	COG1040	competence protein
D0896_RS01800	COG1918	ferrous iron import across plasma membrane
D0896_RS01805	COG2183	response to ionizing radiation
D0896_RS01810	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D0896_RS01835	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
D0896_RS01840	COG1011	Hydrolase
D0896_RS01850	COG0494	nUDIX hydrolase
D0896_RS01855	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
D0896_RS01880	COG4796	Type ii and iii secretion system protein
D0896_RS01900	COG3266	domain, Protein
D0896_RS01905	COG0338	D12 class N6 adenine-specific DNA methyltransferase
D0896_RS01910	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D0896_RS01935	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D0896_RS01940	COG0402	S-adenosylhomocysteine deaminase activity
D0896_RS01945	COG0738	Major facilitator superfamily
D0896_RS01970	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D0896_RS01975	COG1289	transmembrane transporter activity
D0896_RS01990	COG1765	OsmC-like protein
D0896_RS01995	COG3954	Phosphoribulokinase
D0896_RS02005	COG0429	hydrolase of the alpha beta-hydrolase fold
D0896_RS02015	COG0488	(ABC) transporter
D0896_RS02035	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
D0896_RS02040	COG1047	Peptidyl-prolyl cis-trans
D0896_RS02055	COG2964	Protein conserved in bacteria
D0896_RS02115	COG0051	transcription antitermination factor activity, RNA binding
D0896_RS02140	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
D0896_RS02155	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
D0896_RS02220	COG0201	protein transport
D0896_RS02245	COG0202	RNA polymerase activity
D0896_RS02260	COG0789	Transcriptional regulator
D0896_RS02265	COG3036	rescue of stalled ribosome
D0896_RS02295	COG0758	DNA mediated transformation
D0896_RS02305	COG0551	DNA topoisomerase type I activity
D0896_RS02325	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D0896_RS02365	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0896_RS02370	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS02375	COG1309	transcriptional regulator
D0896_RS02400	COG4145	pantothenate transmembrane transporter activity
D0896_RS02405	COG3924	membrane
D0896_RS02410	COG0439	Biotin carboxylase
D0896_RS02415	COG0511	ligase activity, forming carbon-carbon bonds
D0896_RS02445	COG2199	diguanylate cyclase activity
D0896_RS02445	COG2200	EAL domain
D0896_RS02455	COG1077	Cell shape determining protein MreB Mrl
D0896_RS02460	COG1792	Involved in formation and maintenance of cell shape
D0896_RS02465	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
D0896_RS02475	COG1530	ribonuclease E activity
D0896_RS02480	COG3164	Protein of unknown function
D0896_RS02485	COG0312	modulator of DNA gyrase
D0896_RS02490	COG0583	DNA-binding transcription factor activity
D0896_RS02505	COG1289	transmembrane transporter activity
D0896_RS02510	COG2732	(Barnase) inhibitor
D0896_RS02535	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0896_RS02540	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0896_RS02545	COG3105	Protein conserved in bacteria
D0896_RS02550	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
D0896_RS02570	COG0625	glutathione transferase activity
D0896_RS02575	COG2969	positive regulation of protein catabolic process
D0896_RS02585	COG0493	'glutamate synthase
D0896_RS02590	COG0067	glutamate synthase
D0896_RS02590	COG0069	glutamate synthase activity
D0896_RS02590	COG0070	glutamate synthase
D0896_RS02600	COG1242	4 iron, 4 sulfur cluster binding
D0896_RS02605	COG2271	Major facilitator Superfamily
D0896_RS02610	COG1063	alcohol dehydrogenase
D0896_RS02615	COG1312	Catalyzes the dehydration of D-mannonate
D0896_RS02620	COG2198	Histidine kinase
D0896_RS02620	COG5002	protein histidine kinase activity
D0896_RS02620	COG0784	Response regulator, receiver
D0896_RS02625	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
D0896_RS02630	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D0896_RS02635	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS02645	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS02650	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D0896_RS02655	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
D0896_RS02660	COG1137	ATPase activity
D0896_RS02665	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
D0896_RS02670	COG3117	lipopolysaccharide transmembrane transporter activity
D0896_RS02675	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
D0896_RS02685	COG0530	calcium, potassium:sodium antiporter activity
D0896_RS02695	COG1127	ABC transporter
D0896_RS02700	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
D0896_RS02705	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D0896_RS02710	COG2854	intermembrane phospholipid transfer
D0896_RS02715	COG3113	response to antibiotic
D0896_RS02720	COG5007	Belongs to the BolA IbaG family
D0896_RS02730	COG3423	Transcriptional regulator
D0896_RS02735	COG0142	geranyltranstransferase activity
D0896_RS02750	COG0697	spore germination
D0896_RS02760	COG2027	D-alanyl-D-alanine carboxypeptidase
D0896_RS02770	COG1534	Rna-binding protein
D0896_RS02785	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
D0896_RS02790	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
D0896_RS02800	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D0896_RS02840	COG0195	Participates in both transcription termination and antitermination
D0896_RS02890	COG0814	amino acid
D0896_RS02895	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0896_RS02900	COG0826	peptidase U32
D0896_RS02905	COG0826	peptidase U32
D0896_RS02910	COG3154	lipid carrier protein
D0896_RS02915	COG3153	acetyltransferase
D0896_RS02930	COG0693	protein deglycase activity
D0896_RS02935	COG0702	epimerase
D0896_RS02940	COG0701	Predicted permease
D0896_RS02945	COG2823	Periplasmic or secreted lipoprotein
D0896_RS02965	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
D0896_RS02970	COG2721	sulfolactate sulfo-lyase activity
D0896_RS02975	COG2271	Major facilitator Superfamily
D0896_RS02985	COG2084	Dehydrogenase
D0896_RS02990	COG1929	Belongs to the glycerate kinase type-1 family
D0896_RS03010	COG1741	Belongs to the pirin family
D0896_RS03015	COG0583	DNA-binding transcription factor activity
D0896_RS03020	COG3152	Membrane
D0896_RS03025	COG0435	Glutathione S-transferase
D0896_RS03030	COG2259	Doxx family
D0896_RS03040	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
D0896_RS03045	COG4575	ribosome binding
D0896_RS03050	COG1422	Protein of unknown function (DUF1090)
D0896_RS03060	COG0586	Pfam SNARE associated Golgi protein
D0896_RS03070	COG2186	Transcriptional regulator
D0896_RS03075	COG2271	Major facilitator Superfamily
D0896_RS03085	COG2721	sulfolactate sulfo-lyase activity
D0896_RS03100	COG0861	Integral membrane protein TerC family
D0896_RS03105	COG0673	inositol 2-dehydrogenase activity
D0896_RS03110	COG1451	nucleotide metabolic process
D0896_RS03130	COG0446	pyridine nucleotide-disulphide oxidoreductase
D0896_RS03130	COG1902	pentaerythritol trinitrate reductase activity
D0896_RS03185	COG1695	Transcriptional regulator
D0896_RS03190	COG2375	cellular response to nickel ion
D0896_RS03205	COG1461	Dihydroxyacetone kinase
D0896_RS03210	COG2376	Dihydroxyacetone kinase
D0896_RS03285	COG3247	response to pH
D0896_RS03295	COG2205	protein histidine kinase activity
D0896_RS03295	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS03295	COG0784	Response regulator, receiver
D0896_RS03295	COG2198	Histidine kinase
D0896_RS03300	COG2197	response regulator
D0896_RS03325	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D0896_RS03330	COG0358	DNA primase activity
D0896_RS03335	COG0828	Belongs to the bacterial ribosomal protein bS21 family
D0896_RS03400	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D0896_RS03415	COG4991	sh3 domain protein
D0896_RS03420	COG3025	triphosphatase activity
D0896_RS03440	COG2960	long-chain fatty acid transporting porin activity
D0896_RS03455	COG3384	dioxygenase
D0896_RS03460	COG0754	glutathionylspermidine amidase activity
D0896_RS03475	COG0494	nUDIX hydrolase
D0896_RS03480	COG3151	Protein conserved in bacteria
D0896_RS03485	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D0896_RS03490	COG3150	esterase
D0896_RS03500	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
D0896_RS03505	COG2249	NAD(P)H dehydrogenase (quinone) activity
D0896_RS03510	COG0642	Histidine kinase
D0896_RS03520	COG3111	PFAM Bacterial OB fold (BOF) protein
D0896_RS03525	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
D0896_RS03530	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D0896_RS03535	COG0204	Acyl-transferase
D0896_RS03540	COG2132	Multicopper oxidase
D0896_RS03545	COG1032	radical SAM domain protein
D0896_RS03555	COG0656	L-ascorbic acid biosynthetic process
D0896_RS03560	COG1979	alcohol dehydrogenase
D0896_RS03565	COG2207	Transcriptional regulator
D0896_RS03570	COG0586	Pfam SNARE associated Golgi protein
D0896_RS03575	COG0626	cystathionine gamma-synthase activity
D0896_RS03590	COG0848	biopolymer transport protein
D0896_RS03595	COG2211	Major facilitator Superfamily
D0896_RS03620	COG0625	glutathione transferase activity
D0896_RS03630	COG0754	glutathionylspermidine amidase activity
D0896_RS03635	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0896_RS03655	COG0583	DNA-binding transcription factor activity
D0896_RS03660	COG0626	cystathionine gamma-synthase activity
D0896_RS03710	COG1811	Na channel or pump
D0896_RS03720	COG1982	Orn Lys Arg decarboxylase major
D0896_RS03725	COG2211	Major facilitator Superfamily
D0896_RS03740	COG1194	a g-specific adenine glycosylase
D0896_RS03750	COG3171	Protein conserved in bacteria
D0896_RS03760	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D0896_RS03775	COG0762	integral membrane protein
D0896_RS03780	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
D0896_RS03785	COG2805	Type II/IV secretion system protein
D0896_RS03805	COG0189	ligase activity
D0896_RS03810	COG1385	rRNA (uridine-N3-)-methyltransferase activity
D0896_RS03815	COG2356	endonuclease I
D0896_RS03825	COG2814	Major facilitator Superfamily
D0896_RS03865	COG2146	nitrite reductase [NAD(P)H] activity
D0896_RS03880	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS03885	COG1414	Transcriptional regulator
D0896_RS03915	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS03920	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
D0896_RS03940	COG0501	Belongs to the peptidase M48B family
D0896_RS03945	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D0896_RS03960	COG0191	fructose-bisphosphate aldolase activity
D0896_RS03965	COG0668	transmembrane transport
D0896_RS03975	COG2968	Membrane
D0896_RS03990	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D0896_RS03995	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
D0896_RS04015	COG0006	proline dipeptidase activity
D0896_RS04020	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0896_RS04025	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0896_RS04045	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS04050	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D0896_RS04070	COG2723	6-phospho-beta-galactosidase activity
D0896_RS04075	COG1737	Transcriptional regulator
D0896_RS04085	COG1272	protein, Hemolysin III
D0896_RS04095	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
D0896_RS04105	COG0716	FMN binding
D0896_RS04110	COG4974	Belongs to the 'phage' integrase family
D0896_RS04120	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
D0896_RS04140	COG4942	peptidase
D0896_RS04150	COG2814	Major facilitator Superfamily
D0896_RS04165	COG0667	Aldo Keto reductase
D0896_RS04205	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D0896_RS04210	COG1393	Belongs to the ArsC family
D0896_RS04225	COG1538	Outer membrane efflux protein
D0896_RS04230	COG1289	transmembrane transporter activity
D0896_RS04245	COG3592	Divergent 4Fe-4S mono-cluster
D0896_RS04250	COG2388	GCN5-related N-acetyl-transferase
D0896_RS04260	COG3539	Fimbrial protein
D0896_RS04265	COG3539	Fimbrial protein
D0896_RS04270	COG3539	Fimbrial protein
D0896_RS04275	COG3188	usher protein
D0896_RS04280	COG3121	Chaperone
D0896_RS04285	COG3539	Fimbrial protein
D0896_RS04295	COG4974	Belongs to the 'phage' integrase family
D0896_RS04300	COG0582	viral genome integration into host DNA
D0896_RS04310	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
D0896_RS04315	COG1846	Transcriptional regulator
D0896_RS04320	COG0697	spore germination
D0896_RS04370	COG0667	Aldo Keto reductase
D0896_RS04375	COG0814	amino acid
D0896_RS04390	COG0183	Belongs to the thiolase family
D0896_RS04400	COG0823	Involved in the tonB-independent uptake of proteins
D0896_RS04405	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS04410	COG2814	Major facilitator Superfamily
D0896_RS04440	COG3842	ATPase activity
D0896_RS04445	COG0395	ABC-type sugar transport system, permease component
D0896_RS04450	COG1175	transmembrane transport
D0896_RS04455	COG1917	Cupin 2, conserved barrel domain protein
D0896_RS04460	COG1794	racemase activity, acting on amino acids and derivatives
D0896_RS04465	COG0583	DNA-binding transcription factor activity
D0896_RS04475	COG1609	Transcriptional regulator
D0896_RS04480	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS04485	COG2723	6-phospho-beta-galactosidase activity
D0896_RS04490	COG2186	Transcriptional regulator
D0896_RS04500	COG1609	Transcriptional regulator
D0896_RS04525	COG0667	Aldo Keto reductase
D0896_RS04535	COG0861	Integral membrane protein TerC family
D0896_RS04565	COG2165	general secretion pathway protein
D0896_RS04570	COG4795	General secretion pathway protein
D0896_RS04580	COG4967	type IV pilus modification protein PilV
D0896_RS04585	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
D0896_RS04590	COG1025	Belongs to the peptidase M16 family
D0896_RS04595	COG1074	ATP-dependent DNA helicase activity
D0896_RS04600	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D0896_RS04610	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
D0896_RS04610	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
D0896_RS04615	COG0860	N-Acetylmuramoyl-L-alanine amidase
D0896_RS04620	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
D0896_RS04650	COG4656	Part of a membrane complex involved in electron transport
D0896_RS04655	COG1454	alcohol dehydrogenase
D0896_RS04655	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS04685	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
D0896_RS04850	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
D0896_RS04855	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
D0896_RS04860	COG2166	iron-sulfur cluster assembly
D0896_RS04865	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D0896_RS04875	COG0583	DNA-binding transcription factor activity
D0896_RS04880	COG2363	Small membrane protein
D0896_RS04890	COG1349	DNA-binding transcription factor activity
D0896_RS04910	COG0738	Major facilitator superfamily
D0896_RS04915	COG0235	Class ii aldolase
D0896_RS04920	COG1454	alcohol dehydrogenase
D0896_RS04935	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0896_RS04950	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D0896_RS04955	COG2011	ABC-type metal ion transport system permease component
D0896_RS04960	COG1464	Belongs to the NlpA lipoprotein family
D0896_RS04970	COG0477	Major facilitator Superfamily
D0896_RS04980	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0896_RS04985	COG1760	l-serine dehydratase
D0896_RS04990	COG0814	amino acid
D0896_RS04995	COG1611	Belongs to the LOG family
D0896_RS05010	COG3098	single-species biofilm formation
D0896_RS05015	COG0564	pseudouridine synthase activity
D0896_RS05020	COG0716	FMN binding
D0896_RS05025	COG2271	Major facilitator Superfamily
D0896_RS05030	COG4948	Mandelate Racemase Muconate Lactonizing
D0896_RS05035	COG4948	Mandelate Racemase Muconate Lactonizing
D0896_RS05040	COG1929	Belongs to the glycerate kinase type-1 family
D0896_RS05050	COG4999	Histidine kinase
D0896_RS05050	COG3437	response regulator, receiver
D0896_RS05050	COG3850	Histidine kinase
D0896_RS05050	COG2205	protein histidine kinase activity
D0896_RS05060	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D0896_RS05065	COG3956	TIGRFAM MazG family protein
D0896_RS05085	COG0602	queuosine metabolic process
D0896_RS05090	COG0720	synthase
D0896_RS05110	COG2234	aminopeptidase activity
D0896_RS05170	COG1388	LysM domain
D0896_RS05170	COG4942	peptidase
D0896_RS05175	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D0896_RS05200	COG0163	prenyltransferase activity
D0896_RS05205	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
D0896_RS05310	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS05315	COG4558	Periplasmic binding protein
D0896_RS05320	COG3720	iron ion transport
D0896_RS05340	COG0679	Auxin Efflux Carrier
D0896_RS05355	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0896_RS05360	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0896_RS05405	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS05410	COG4558	Periplasmic binding protein
D0896_RS05415	COG3720	iron ion transport
D0896_RS05435	COG0679	Auxin Efflux Carrier
D0896_RS05450	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0896_RS05455	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0896_RS05460	COG1121	(ABC) transporter
D0896_RS05470	COG1609	Transcriptional regulator
D0896_RS05475	COG1940	carbohydrate kinase activity
D0896_RS05480	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0896_RS05485	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS05490	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS05495	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS05505	COG4580	involved in the transport of maltose and maltodextrins
D0896_RS05515	COG2723	6-phospho-beta-galactosidase activity
D0896_RS05525	COG0309	Hydrogenase expression formation protein (HypE)
D0896_RS05530	COG0409	Hydrogenase expression formation protein
D0896_RS05535	COG0298	carbon dioxide binding
D0896_RS05540	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
D0896_RS05560	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0896_RS05565	COG0651	ATP synthesis coupled electron transport
D0896_RS05570	COG0650	Formate hydrogenlyase subunit 4
D0896_RS05575	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
D0896_RS05575	COG3261	NADH dehydrogenase
D0896_RS05580	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D0896_RS05585	COG3260	NADH ubiquinone oxidoreductase 20
D0896_RS05595	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
D0896_RS05605	COG2723	6-phospho-beta-galactosidase activity
D0896_RS05610	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0896_RS05610	COG1263	PTS System
D0896_RS05615	COG1609	Transcriptional regulator
D0896_RS05620	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0896_RS05625	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
D0896_RS05630	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
D0896_RS05660	COG1349	DNA-binding transcription factor activity
D0896_RS05665	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS05670	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS05680	COG3732	PTS system glucitol sorbitol-specific
D0896_RS05685	COG3730	PTS system glucitol sorbitol-specific
D0896_RS05690	COG2951	lytic endotransglycosylase activity
D0896_RS05700	COG1121	(ABC) transporter
D0896_RS05705	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0896_RS05710	COG0803	Belongs to the bacterial solute-binding protein 9 family
D0896_RS05715	COG1546	Belongs to the CinA family
D0896_RS05735	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
D0896_RS05765	COG2823	Periplasmic or secreted lipoprotein
D0896_RS05770	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0896_RS05775	COG1238	metal cluster binding
D0896_RS05795	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
D0896_RS05800	COG2814	Major facilitator Superfamily
D0896_RS05805	COG1566	PFAM secretion protein HlyD family protein
D0896_RS05810	COG1846	Transcriptional regulator
D0896_RS05820	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
D0896_RS05830	COG4176	ABC-type proline glycine betaine transport system permease component
D0896_RS05845	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D0896_RS05855	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D0896_RS05860	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0896_RS05865	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0896_RS05870	COG4575	ribosome binding
D0896_RS05895	COG2916	Histone family protein nucleoid-structuring protein H-NS
D0896_RS05910	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D0896_RS05915	COG0640	Transcriptional regulator
D0896_RS05925	COG0583	DNA-binding transcription factor activity
D0896_RS05930	COG3284	Transcriptional regulator
D0896_RS05940	COG3539	Fimbrial protein
D0896_RS05945	COG3121	Chaperone
D0896_RS05965	COG3188	usher protein
D0896_RS05975	COG3539	Fimbrial protein
D0896_RS05980	COG2197	response regulator
D0896_RS05995	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS06005	COG0235	Class ii aldolase
D0896_RS06015	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS06050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS06055	COG2207	Transcriptional regulator
D0896_RS06055	COG3708	Transcriptional regulator
D0896_RS06080	COG4974	Belongs to the 'phage' integrase family
D0896_RS06115	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D0896_RS06155	COG4695	Portal protein
D0896_RS06310	COG2867	negative regulation of translational initiation
D0896_RS06325	COG0497	DNA recombination
D0896_RS06345	COG4536	flavin adenine dinucleotide binding
D0896_RS06350	COG4137	Cytochrome C assembly protein
D0896_RS06355	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
D0896_RS06390	COG2885	chlorophyll binding
D0896_RS06395	COG2199	diguanylate cyclase activity
D0896_RS06405	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0896_RS06410	COG1605	Chorismate mutase
D0896_RS06410	COG0287	Prephenate dehydrogenase
D0896_RS06420	COG0077	Prephenate dehydratase
D0896_RS06420	COG1605	Chorismate mutase
D0896_RS06430	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D0896_RS06435	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0896_RS06450	COG0542	response to heat
D0896_RS06480	COG0477	Major facilitator Superfamily
D0896_RS06485	COG5544	Lipoprotein
D0896_RS06490	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D0896_RS06500	COG3148	PFAM DTW domain containing protein
D0896_RS06505	COG3118	belongs to the thioredoxin family
D0896_RS06510	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0896_RS06525	COG0513	Belongs to the DEAD box helicase family
D0896_RS06535	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
D0896_RS06545	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
D0896_RS06550	COG3026	antisigma factor binding
D0896_RS06555	COG3086	response to oxidative stress
D0896_RS06565	COG0681	Belongs to the peptidase S26 family
D0896_RS06585	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
D0896_RS06595	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0896_RS06600	COG1737	Transcriptional regulator
D0896_RS06605	COG0560	Phosphoserine phosphatase
D0896_RS06620	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
D0896_RS06620	COG0047	phosphoribosylformylglycinamidine synthase activity
D0896_RS06625	COG2205	protein histidine kinase activity
D0896_RS06630	COG3170	Tfp pilus assembly protein FimV
D0896_RS06635	COG2204	response regulator
D0896_RS06640	COG0347	Belongs to the P(II) protein family
D0896_RS06645	COG1017	nitric oxide dioxygenase activity
D0896_RS06645	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0896_RS06660	COG2259	Doxx family
D0896_RS06665	COG1940	carbohydrate kinase activity
D0896_RS06670	COG0457	Tetratricopeptide repeat
D0896_RS06675	COG0477	Major facilitator Superfamily
D0896_RS06675	COG2814	Major facilitator Superfamily
D0896_RS06680	COG2017	converts alpha-aldose to the beta-anomer
D0896_RS06685	COG2814	Major facilitator Superfamily
D0896_RS06690	COG3711	transcriptional antiterminator
D0896_RS06695	COG3683	transport system, periplasmic component
D0896_RS06700	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
D0896_RS06730	COG0822	iron-sulfur transferase activity
D0896_RS06750	COG0633	Ferredoxin
D0896_RS06755	COG2975	iron-sulfur cluster assembly
D0896_RS06775	COG2897	thiosulfate sulfurtransferase activity
D0896_RS06780	COG2373	Large extracellular alpha-helical protein
D0896_RS06785	COG4953	penicillin-binding protein 1C
D0896_RS06825	COG2976	Protein conserved in bacteria
D0896_RS06865	COG1645	bacterial-type flagellum-dependent swarming motility
D0896_RS06875	COG0517	IMP dehydrogenase activity
D0896_RS06875	COG0516	GMP reductase activity
D0896_RS06885	COG3119	arylsulfatase activity
D0896_RS06890	COG0641	radical SAM
D0896_RS06910	COG2200	EAL domain
D0896_RS06925	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
D0896_RS06940	COG2723	6-phospho-beta-galactosidase activity
D0896_RS06950	COG2233	PERMEase
D0896_RS06965	COG1393	Belongs to the ArsC family
D0896_RS06970	COG4783	chaperone-mediated protein folding
D0896_RS06975	COG0628	permease
D0896_RS06980	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
D0896_RS06985	COG2716	regulation of RNA biosynthetic process
D0896_RS06995	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
D0896_RS07005	COG2321	neutral zinc metallopeptidase
D0896_RS07010	COG1444	tRNA N-acetyltransferase activity
D0896_RS07015	COG0400	carboxylic ester hydrolase activity
D0896_RS07030	COG1393	Belongs to the ArsC family
D0896_RS07040	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0896_RS07050	COG0493	'glutamate synthase
D0896_RS07050	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0896_RS07060	COG5342	invasion associated locus B
D0896_RS07065	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D0896_RS07070	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D0896_RS07080	COG4810	utilization protein
D0896_RS07170	COG0860	N-Acetylmuramoyl-L-alanine amidase
D0896_RS07190	COG2837	iron assimilation
D0896_RS07200	COG4150	thiosulfate binding
D0896_RS07205	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
D0896_RS07210	COG4208	sulfate ABC transporter
D0896_RS07215	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
D0896_RS07225	COG4319	ketosteroid isomerase
D0896_RS07260	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D0896_RS07280	COG3530	Putative quorum-sensing-regulated virulence factor
D0896_RS07285	COG0385	Bile acid
D0896_RS07290	COG0583	DNA-binding transcription factor activity
D0896_RS07325	COG3415	Transposase
D0896_RS07330	COG3415	Transposase
D0896_RS07345	COG2200	EAL domain
D0896_RS07345	COG2199	diguanylate cyclase activity
D0896_RS07350	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0896_RS07365	COG0667	Aldo Keto reductase
D0896_RS07370	COG3961	Belongs to the TPP enzyme family
D0896_RS07385	COG3279	Response regulator of the LytR AlgR family
D0896_RS07390	COG3275	phosphorelay sensor kinase activity
D0896_RS07400	COG0436	Aminotransferase
D0896_RS07410	COG2807	transmembrane transport
D0896_RS07415	COG0590	tRNA wobble adenosine to inosine editing
D0896_RS07420	COG0583	DNA-binding transcription factor activity
D0896_RS07440	COG2116	formate transmembrane transporter activity
D0896_RS07445	COG2853	Lipoprotein
D0896_RS07460	COG3691	Protein conserved in bacteria
D0896_RS07475	COG2062	phosphohistidine phosphatase, SixA
D0896_RS07500	COG0730	response to heat
D0896_RS07505	COG3101	peptidyl-lysine hydroxylation
D0896_RS07520	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D0896_RS07540	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D0896_RS07550	COG0586	Pfam SNARE associated Golgi protein
D0896_RS07560	COG0285	dihydrofolate synthase activity
D0896_RS07565	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
D0896_RS07570	COG1286	toxin biosynthetic process
D0896_RS07575	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
D0896_RS07580	COG0163	prenyltransferase activity
D0896_RS07600	COG4160	amino acid transport
D0896_RS07605	COG4598	ABC transporter
D0896_RS07615	COG1090	epimerase
D0896_RS07620	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D0896_RS07625	COG0625	glutathione transferase activity
D0896_RS07630	COG0625	glutathione transferase activity
D0896_RS07635	COG0622	Phosphoesterase
D0896_RS07640	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
D0896_RS07645	COG0857	belongs to the CobB CobQ family
D0896_RS07645	COG0280	phosphate acetyltransferase
D0896_RS07665	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0896_RS07670	COG0490	domain, Protein
D0896_RS07670	COG0471	metal ion transport
D0896_RS07680	COG0436	Aminotransferase
D0896_RS07685	COG0583	DNA-binding transcription factor activity
D0896_RS07740	COG0839	Belongs to the complex I subunit 6 family
D0896_RS07750	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D0896_RS07755	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D0896_RS07770	COG2153	protein acetylation
D0896_RS07775	COG1169	isochorismate synthase
D0896_RS07800	COG0318	PFAM AMP-dependent synthetase and ligase
D0896_RS07810	COG5464	transposase or invertase
D0896_RS07825	COG1414	Transcriptional regulator
D0896_RS07835	COG2271	Major facilitator Superfamily
D0896_RS07845	COG0247	lactate metabolic process
D0896_RS07855	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D0896_RS07860	COG2271	Major facilitator Superfamily
D0896_RS07865	COG0584	glycerophosphoryl diester phosphodiesterase
D0896_RS07875	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0896_RS07905	COG0784	Response regulator, receiver
D0896_RS07905	COG2205	protein histidine kinase activity
D0896_RS07915	COG2198	Histidine kinase
D0896_RS07915	COG0642	Histidine kinase
D0896_RS07930	COG2169	Transcriptional regulator
D0896_RS07930	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D0896_RS07935	COG3145	DNA-N1-methyladenine dioxygenase activity
D0896_RS07940	COG4615	Cyclic peptide transporter
D0896_RS07945	COG2239	Acts as a magnesium transporter
D0896_RS07950	COG0659	secondary active sulfate transmembrane transporter activity
D0896_RS07965	COG0628	permease
D0896_RS08030	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
D0896_RS08035	COG5532	Uncharacterized conserved protein (DUF2303)
D0896_RS08050	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
D0896_RS08055	COG4197	protein conserved in bacteria, prophage-related
D0896_RS08075	COG4626	Terminase
D0896_RS08075	COG1802	Transcriptional regulator
D0896_RS08085	COG4725	Belongs to the MT-A70-like family
D0896_RS08095	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
D0896_RS08110	COG1403	HNH endonuclease
D0896_RS08115	COG0484	heat shock protein binding
D0896_RS08160	COG3179	chitinase
D0896_RS08200	COG1802	Transcriptional regulator
D0896_RS08200	COG4626	Terminase
D0896_RS08205	COG4695	Portal protein
D0896_RS08305	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
D0896_RS08320	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
D0896_RS08325	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D0896_RS08330	COG2135	peptidase activity
D0896_RS08360	COG1349	DNA-binding transcription factor activity
D0896_RS08365	COG0494	nUDIX hydrolase
D0896_RS08385	COG1061	Type III restriction enzyme res subunit
D0896_RS08390	COG1187	pseudouridine synthase activity
D0896_RS08395	COG2814	Major facilitator Superfamily
D0896_RS08405	COG4172	Belongs to the ABC transporter superfamily
D0896_RS08410	COG4239	(ABC) transporter, permease
D0896_RS08415	COG4174	ABC transporter (Permease)
D0896_RS08420	COG4166	transmembrane transport
D0896_RS08425	COG2200	EAL domain
D0896_RS08430	COG0791	NLP P60 protein
D0896_RS08435	COG0671	phosphoesterase, PA-phosphatase related
D0896_RS08440	COG0523	cobalamin synthesis protein
D0896_RS08445	COG0246	Mannitol dehydrogenase
D0896_RS08450	COG1312	Catalyzes the dehydration of D-mannonate
D0896_RS08475	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS08475	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS08480	COG1105	Belongs to the carbohydrate kinase PfkB family
D0896_RS08485	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
D0896_RS08485	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0896_RS08485	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0896_RS08495	COG2855	membrane
D0896_RS08505	COG0583	DNA-binding transcription factor activity
D0896_RS08510	COG0833	amino acid
D0896_RS08520	COG4771	TonB-dependent receptor
D0896_RS08535	COG2311	Membrane
D0896_RS08550	COG1129	ABC transporter
D0896_RS08560	COG2949	membrane
D0896_RS08570	COG1346	cytolysis
D0896_RS08580	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D0896_RS08585	COG3659	wide pore channel activity
D0896_RS08600	COG2723	6-phospho-beta-galactosidase activity
D0896_RS08610	COG1538	Outer membrane efflux protein
D0896_RS08615	COG0586	Pfam SNARE associated Golgi protein
D0896_RS08625	COG1686	Belongs to the peptidase S11 family
D0896_RS08635	COG0277	FAD linked oxidase domain protein
D0896_RS08640	COG1472	Belongs to the glycosyl hydrolase 3 family
D0896_RS08645	COG1732	Glycine betaine
D0896_RS08650	COG1174	glycine betaine transport
D0896_RS08655	COG1125	glycine betaine transport
D0896_RS08660	COG1174	glycine betaine transport
D0896_RS08670	COG3275	phosphorelay sensor kinase activity
D0896_RS08680	COG4807	Protein conserved in bacteria
D0896_RS08700	COG5455	response to cobalt ion
D0896_RS08705	COG0583	DNA-binding transcription factor activity
D0896_RS08710	COG2252	PERMEase
D0896_RS08720	COG0583	DNA-binding transcription factor activity
D0896_RS08735	COG0351	phosphomethylpyrimidine kinase
D0896_RS08740	COG1830	Aldolase
D0896_RS08775	COG1070	Carbohydrate kinase
D0896_RS08785	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0896_RS08790	COG4948	Mandelate Racemase Muconate Lactonizing
D0896_RS08795	COG0747	negative chemotaxis
D0896_RS08800	COG0601	transmembrane transport
D0896_RS08805	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS08810	COG0444	Belongs to the ABC transporter superfamily
D0896_RS08815	COG4608	Belongs to the ABC transporter superfamily
D0896_RS08825	COG0826	peptidase U32
D0896_RS08830	COG0745	RESPONSE REGULATOR receiver
D0896_RS08835	COG2205	protein histidine kinase activity
D0896_RS08860	COG1301	dicarboxylic acid transport
D0896_RS08875	COG5002	protein histidine kinase activity
D0896_RS08880	COG0443	Heat shock 70 kDa protein
D0896_RS08890	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
D0896_RS08905	COG2982	Protein involved in outer membrane biogenesis
D0896_RS08910	COG1253	flavin adenine dinucleotide binding
D0896_RS08945	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
D0896_RS08970	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
D0896_RS08975	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D0896_RS08980	COG1051	belongs to the nudix hydrolase family
D0896_RS08985	COG0297	glycogen (starch) synthase activity
D0896_RS09060	COG0438	transferase activity, transferring glycosyl groups
D0896_RS09065	COG1216	Glycosyl transferase, family 2
D0896_RS09065	COG1442	glycosyl transferase family 8
D0896_RS09075	COG0463	Glycosyl transferase, family 2
D0896_RS09100	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
D0896_RS09130	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D0896_RS09135	COG0583	DNA-binding transcription factor activity
D0896_RS09145	COG0531	amino acid
D0896_RS09150	COG0640	Transcriptional regulator
D0896_RS09155	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
D0896_RS09165	COG2925	Exonuclease
D0896_RS09180	COG1289	transmembrane transporter activity
D0896_RS09200	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
D0896_RS09210	COG1942	4-Oxalocrotonate Tautomerase
D0896_RS09215	COG0583	DNA-binding transcription factor activity
D0896_RS09220	COG0095	Lipoate-protein ligase
D0896_RS09225	COG0477	Major facilitator Superfamily
D0896_RS09240	COG5001	Diguanylate cyclase
D0896_RS09240	COG3300	MHYT domain
D0896_RS09250	COG3615	Tellurite resistance protein tehB
D0896_RS09275	COG3706	GGDEF domain
D0896_RS09295	COG0534	Mate efflux family protein
D0896_RS09305	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D0896_RS09325	COG0604	alcohol dehydrogenase
D0896_RS09330	COG1309	transcriptional regulator
D0896_RS09335	COG0025	NhaP-type Na H and K H
D0896_RS09385	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0896_RS09400	COG1418	mRNA catabolic process
D0896_RS09405	COG0270	DNA (cytosine-5-)-methyltransferase activity
D0896_RS09410	COG3727	T/G mismatch-specific endonuclease activity
D0896_RS09415	COG0697	spore germination
D0896_RS09420	COG2354	Protein conserved in bacteria
D0896_RS09450	COG0366	Alpha amylase catalytic
D0896_RS09455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS09465	COG0765	amino acid transport
D0896_RS09470	COG1126	abc transporter atp-binding protein
D0896_RS09475	COG2197	response regulator
D0896_RS09485	COG2197	response regulator
D0896_RS09520	COG3318	Belongs to the UPF0149 family
D0896_RS09520	COG3012	SEC-C Motif Domain Protein
D0896_RS09525	COG0814	amino acid
D0896_RS09535	COG1528	Iron-storage protein
D0896_RS09550	COG0477	Major facilitator Superfamily
D0896_RS09560	COG2211	Major facilitator Superfamily
D0896_RS09570	COG1528	Iron-storage protein
D0896_RS09580	COG1879	ABC-type sugar transport system periplasmic component
D0896_RS09590	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS09615	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
D0896_RS09625	COG3102	Protein conserved in bacteria
D0896_RS09645	COG3788	relative of glutathione S-transferase, MAPEG superfamily
D0896_RS09650	COG1801	Protein of unknown function DUF72
D0896_RS09655	COG1335	isochorismatase
D0896_RS09665	COG0494	nUDIX hydrolase
D0896_RS09690	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0896_RS09700	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
D0896_RS09705	COG0739	heme binding
D0896_RS09710	COG1560	Kdo2-lipid A biosynthetic process
D0896_RS09720	COG1737	Transcriptional regulator
D0896_RS09730	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
D0896_RS09735	COG0129	dihydroxy-acid dehydratase activity
D0896_RS09740	COG0800	Aldolase
D0896_RS09750	COG3141	response to X-ray
D0896_RS09755	COG2979	Protein of unknown function (DUF533)
D0896_RS09760	COG1770	oligopeptidase
D0896_RS09765	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D0896_RS09775	COG2372	response to copper ion
D0896_RS09780	COG1276	copper resistance
D0896_RS09795	COG2990	Protein conserved in bacteria
D0896_RS09820	COG3008	intermembrane lipid transfer
D0896_RS09825	COG2995	paraquat-inducible protein a
D0896_RS09830	COG1956	GAF domain-containing protein
D0896_RS09850	COG2814	Major facilitator Superfamily
D0896_RS09860	COG1414	Transcriptional regulator
D0896_RS09900	COG0768	penicillin binding
D0896_RS09905	COG2226	methyltransferase
D0896_RS09920	COG3716	PTS system mannose fructose sorbose family IID component
D0896_RS09925	COG3715	PTS system
D0896_RS09930	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS09930	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0896_RS09935	COG1253	flavin adenine dinucleotide binding
D0896_RS09940	COG2200	EAL domain
D0896_RS09945	COG1760	l-serine dehydratase
D0896_RS09965	COG0251	oxidation-reduction process
D0896_RS09970	COG1199	ATP-dependent helicase activity
D0896_RS09980	COG3065	identical protein binding
D0896_RS09990	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
D0896_RS10000	COG2894	cell division
D0896_RS10015	COG0179	Fumarylacetoacetate (FAA) hydrolase
D0896_RS10045	COG2719	SpoVR family
D0896_RS10065	COG1619	proteins homologs of microcin C7 resistance protein MccF
D0896_RS10075	COG4774	siderophore transport
D0896_RS10090	COG2308	Evidence 4 Homologs of previously reported genes of
D0896_RS10130	COG0583	DNA-binding transcription factor activity
D0896_RS10135	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D0896_RS10150	COG1882	Formate acetyltransferase
D0896_RS10180	COG0583	DNA-binding transcription factor activity
D0896_RS10210	COG0583	DNA-binding transcription factor activity
D0896_RS10225	COG3122	Protein conserved in bacteria
D0896_RS10250	COG2885	chlorophyll binding
D0896_RS10260	COG1388	LysM domain
D0896_RS10315	COG0012	GTP binding
D0896_RS10335	COG0659	secondary active sulfate transmembrane transporter activity
D0896_RS10370	COG2890	protein-(glutamine-N5) methyltransferase activity
D0896_RS10390	COG0387	Pfam Sodium calcium exchanger
D0896_RS10395	COG4572	Cation transport regulator
D0896_RS10400	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
D0896_RS10410	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
D0896_RS10415	COG3707	response regulator
D0896_RS10420	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0896_RS10430	COG1116	anion transmembrane transporter activity
D0896_RS10435	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D0896_RS10435	COG2146	nitrite reductase [NAD(P)H] activity
D0896_RS10440	COG0243	molybdopterin cofactor binding
D0896_RS10445	COG4932	domain protein
D0896_RS10450	COG2197	response regulator
D0896_RS10455	COG3850	Histidine kinase
D0896_RS10460	COG2223	nitrite transmembrane transporter activity
D0896_RS10465	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
D0896_RS10470	COG1140	nitrate reductase beta subunit
D0896_RS10475	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
D0896_RS10480	COG2181	nitrate reductase activity
D0896_RS10490	COG1522	sequence-specific DNA binding
D0896_RS10520	COG0788	formyltetrahydrofolate deformylase activity
D0896_RS10530	COG1752	Esterase of the alpha-beta hydrolase superfamily
D0896_RS10535	COG0745	RESPONSE REGULATOR receiver
D0896_RS10540	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D0896_RS10545	COG2916	Histone family protein nucleoid-structuring protein H-NS
D0896_RS10550	COG1435	thymidine kinase activity
D0896_RS10555	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS10555	COG1454	alcohol dehydrogenase
D0896_RS10565	COG2095	MarC family integral membrane protein
D0896_RS10570	COG4166	transmembrane transport
D0896_RS10575	COG0601	transmembrane transport
D0896_RS10580	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS10585	COG0444	Belongs to the ABC transporter superfamily
D0896_RS10595	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D0896_RS10615	COG2353	YceI-like domain
D0896_RS10620	COG2350	Protein conserved in bacteria
D0896_RS10630	COG3001	Fructosamine kinase
D0896_RS10640	COG1105	Belongs to the carbohydrate kinase PfkB family
D0896_RS10645	COG3137	Salt-induced outer membrane protein
D0896_RS10850	COG3772	lysozyme
D0896_RS10875	COG5410	chromosome segregation
D0896_RS10950	COG1196	nuclear chromosome segregation
D0896_RS10950	COG0741	lytic transglycosylase activity
D0896_RS10950	COG0739	heme binding
D0896_RS11050	COG0072	phenylalanine-tRNA ligase activity
D0896_RS11050	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D0896_RS11070	COG0583	DNA-binding transcription factor activity
D0896_RS11090	COG0386	Belongs to the glutathione peroxidase family
D0896_RS11100	COG0791	NLP P60 protein
D0896_RS11110	COG4256	Hemin uptake protein
D0896_RS11115	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0896_RS11125	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D0896_RS11125	COG0574	Belongs to the PEP-utilizing enzyme family
D0896_RS11135	COG0628	permease
D0896_RS11140	COG0277	FAD linked oxidase domain protein
D0896_RS11140	COG0247	lactate metabolic process
D0896_RS11145	COG2050	protein possibly involved in aromatic compounds catabolism
D0896_RS11150	COG2261	transglycosylase associated protein
D0896_RS11180	COG1120	ATPase activity
D0896_RS11185	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS11195	COG0583	DNA-binding transcription factor activity
D0896_RS11220	COG1304	FMN binding
D0896_RS11235	COG0316	Belongs to the HesB IscA family
D0896_RS11240	COG0719	Fe-S assembly protein
D0896_RS11245	COG0396	ATPase activity
D0896_RS11250	COG0719	Fe-S assembly protein
D0896_RS11265	COG1376	ErfK ybiS ycfS ynhG family protein
D0896_RS11290	COG1309	transcriptional regulator
D0896_RS11295	COG1082	Xylose isomerase domain protein TIM barrel
D0896_RS11295	COG3185	4-Hydroxyphenylpyruvate dioxygenase
D0896_RS11300	COG2271	Major facilitator Superfamily
D0896_RS11305	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
D0896_RS11315	COG1120	ATPase activity
D0896_RS11320	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS11325	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D0896_RS11330	COG1414	Transcriptional regulator
D0896_RS11365	COG2814	Major facilitator Superfamily
D0896_RS11385	COG0583	DNA-binding transcription factor activity
D0896_RS11390	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0896_RS11410	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0896_RS11415	COG1116	anion transmembrane transporter activity
D0896_RS11420	COG4774	siderophore transport
D0896_RS11425	COG1120	ATPase activity
D0896_RS11430	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS11435	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS11455	COG0765	amino acid transport
D0896_RS11460	COG1126	abc transporter atp-binding protein
D0896_RS11490	COG1473	amidohydrolase
D0896_RS11495	COG3383	formate dehydrogenase (NAD+) activity
D0896_RS11500	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
D0896_RS11515	COG1175	transmembrane transport
D0896_RS11545	COG4133	protoheme IX ABC transporter activity
D0896_RS11550	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D0896_RS11555	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D0896_RS11570	COG1138	Cytochrome C-type biogenesis protein
D0896_RS11575	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D0896_RS11580	COG4235	cytochrome complex assembly
D0896_RS11580	COG3088	subunit of a heme lyase
D0896_RS11615	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D0896_RS11620	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
D0896_RS11635	COG5002	protein histidine kinase activity
D0896_RS11635	COG3850	Histidine kinase
D0896_RS11640	COG0745	RESPONSE REGULATOR receiver
D0896_RS11660	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0896_RS11695	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS11700	COG2610	gluconate transmembrane transporter activity
D0896_RS11705	COG1250	3-hydroxyacyl-CoA dehydrogenase
D0896_RS11715	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
D0896_RS11725	COG0583	DNA-binding transcription factor activity
D0896_RS11755	COG2814	Major facilitator Superfamily
D0896_RS11770	COG0277	FAD linked oxidase domain protein
D0896_RS11775	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0896_RS11800	COG0402	S-adenosylhomocysteine deaminase activity
D0896_RS11845	COG3321	synthase
D0896_RS11845	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS11845	COG0604	alcohol dehydrogenase
D0896_RS11875	COG4608	Belongs to the ABC transporter superfamily
D0896_RS11880	COG0444	Belongs to the ABC transporter superfamily
D0896_RS11905	COG0346	lactoylglutathione lyase activity
D0896_RS11910	COG1349	DNA-binding transcription factor activity
D0896_RS11940	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
D0896_RS11960	COG0300	oxidoreductase activity
D0896_RS12005	COG0307	riboflavin synthase, alpha
D0896_RS12010	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
D0896_RS12015	COG2814	Major facilitator Superfamily
D0896_RS12020	COG0583	DNA-binding transcription factor activity
D0896_RS12035	COG2814	Major facilitator Superfamily
D0896_RS12050	COG0791	NLP P60 protein
D0896_RS12055	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
D0896_RS12065	COG0346	lactoylglutathione lyase activity
D0896_RS12070	COG1902	pentaerythritol trinitrate reductase activity
D0896_RS12075	COG1309	transcriptional regulator
D0896_RS12080	COG3313	Fe-S protein
D0896_RS12085	COG4989	oxidoreductase activity
D0896_RS12090	COG2032	superoxide dismutase activity
D0896_RS12095	COG1289	transmembrane transporter activity
D0896_RS12100	COG1566	PFAM secretion protein HlyD family protein
D0896_RS12115	COG3706	GGDEF domain
D0896_RS12130	COG3895	Periplasmic Protein
D0896_RS12145	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
D0896_RS12150	COG0625	glutathione transferase activity
D0896_RS12165	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
D0896_RS12175	COG4659	FMN binding
D0896_RS12210	COG2723	6-phospho-beta-galactosidase activity
D0896_RS12220	COG0673	inositol 2-dehydrogenase activity
D0896_RS12230	COG2814	Major facilitator Superfamily
D0896_RS12250	COG3038	cytochrome b561
D0896_RS12270	COG0583	DNA-binding transcription factor activity
D0896_RS12275	COG3485	protocatechuate 3,4-dioxygenase
D0896_RS12280	COG3485	protocatechuate 3,4-dioxygenase
D0896_RS12285	COG5383	Protein conserved in bacteria
D0896_RS12290	COG2272	Belongs to the type-B carboxylesterase lipase family
D0896_RS12305	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0896_RS12310	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D0896_RS12315	COG1275	C4-dicarboxylate transporter malic acid transport protein
D0896_RS12320	COG0500	methyltransferase
D0896_RS12335	COG3708	Transcriptional regulator
D0896_RS12335	COG2207	Transcriptional regulator
D0896_RS12340	COG3135	benzoate transporter
D0896_RS12345	COG1396	sequence-specific DNA binding
D0896_RS12350	COG0826	peptidase U32
D0896_RS12370	COG1294	oxidase, subunit
D0896_RS12375	COG1271	oxidase subunit
D0896_RS12380	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0896_RS12385	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D0896_RS12390	COG3842	ATPase activity
D0896_RS12395	COG1176	ABC-type spermidine putrescine transport system, permease component I
D0896_RS12400	COG1177	transmembrane transport
D0896_RS12405	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS12435	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS12440	COG0747	negative chemotaxis
D0896_RS12450	COG3238	Protein conserved in bacteria
D0896_RS12455	COG1247	-acetyltransferase
D0896_RS12465	COG2130	NADP-dependent
D0896_RS12480	COG3691	Protein conserved in bacteria
D0896_RS12485	COG1228	amidohydrolase
D0896_RS12490	COG4772	TonB-dependent receptor
D0896_RS12515	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
D0896_RS12525	COG1473	amidohydrolase
D0896_RS12530	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0896_RS12535	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS12545	COG0765	amino acid transport
D0896_RS12550	COG1126	abc transporter atp-binding protein
D0896_RS12560	COG0625	glutathione transferase activity
D0896_RS12575	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D0896_RS12580	COG3842	ATPase activity
D0896_RS12585	COG1840	ABC-type Fe3 transport system, periplasmic component
D0896_RS12590	COG1178	ABC-type Fe3 transport system permease component
D0896_RS12595	COG2162	N-hydroxyarylamine O-acetyltransferase activity
D0896_RS12600	COG2181	nitrate reductase activity
D0896_RS12605	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
D0896_RS12610	COG1140	nitrate reductase beta subunit
D0896_RS12615	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
D0896_RS12620	COG2223	nitrite transmembrane transporter activity
D0896_RS12635	COG1414	Transcriptional regulator
D0896_RS12640	COG4948	Mandelate Racemase Muconate Lactonizing
D0896_RS12645	COG4829	muconolactone delta-isomerase
D0896_RS12650	COG3485	protocatechuate 3,4-dioxygenase
D0896_RS12660	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
D0896_RS12680	COG3383	formate dehydrogenase (NAD+) activity
D0896_RS12680	COG0243	molybdopterin cofactor binding
D0896_RS12685	COG3383	formate dehydrogenase (NAD+) activity
D0896_RS12685	COG0243	molybdopterin cofactor binding
D0896_RS12690	COG0437	4 iron, 4 sulfur cluster binding
D0896_RS12695	COG2864	formate dehydrogenase
D0896_RS12710	COG2326	polyphosphate kinase activity
D0896_RS12720	COG2814	Major facilitator Superfamily
D0896_RS12730	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0896_RS12740	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS12750	COG0747	negative chemotaxis
D0896_RS12755	COG1064	alcohol dehydrogenase
D0896_RS12770	COG0488	(ABC) transporter
D0896_RS12810	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS12815	COG3729	General stress protein
D0896_RS12835	COG3685	Protein conserved in bacteria
D0896_RS12845	COG0366	Alpha amylase catalytic
D0896_RS12855	COG2323	membrane
D0896_RS12865	COG3111	PFAM Bacterial OB fold (BOF) protein
D0896_RS12870	COG1764	response to oxidative stress
D0896_RS12895	COG3781	membrane
D0896_RS12900	COG0243	molybdopterin cofactor binding
D0896_RS12905	COG0583	DNA-binding transcription factor activity
D0896_RS12910	COG2814	Major facilitator Superfamily
D0896_RS12920	COG1285	pathogenesis
D0896_RS12925	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
D0896_RS12935	COG0583	DNA-binding transcription factor activity
D0896_RS12955	COG0519	Catalyzes the synthesis of GMP from XMP
D0896_RS12955	COG0518	GMP synthase (glutamine-hydrolyzing) activity
D0896_RS12995	COG0596	Alpha beta hydrolase
D0896_RS13005	COG2205	protein histidine kinase activity
D0896_RS13020	COG0076	glutamate decarboxylase activity
D0896_RS13025	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D0896_RS13030	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0896_RS13035	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0896_RS13040	COG1116	anion transmembrane transporter activity
D0896_RS13045	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
D0896_RS13060	COG0673	inositol 2-dehydrogenase activity
D0896_RS13070	COG1609	Transcriptional regulator
D0896_RS13075	COG3706	GGDEF domain
D0896_RS13080	COG0402	S-adenosylhomocysteine deaminase activity
D0896_RS13085	COG1953	Uracil, thiamine, allantoin
D0896_RS13120	COG1715	Restriction endonuclease
D0896_RS13135	COG2207	Transcriptional regulator
D0896_RS13155	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D0896_RS13220	COG0765	amino acid transport
D0896_RS13230	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
D0896_RS13240	COG2070	2-Nitropropane dioxygenase
D0896_RS13245	COG0583	DNA-binding transcription factor activity
D0896_RS13255	COG1902	pentaerythritol trinitrate reductase activity
D0896_RS13260	COG4529	Protein conserved in bacteria
D0896_RS13265	COG0477	Major facilitator Superfamily
D0896_RS13310	COG2223	nitrite transmembrane transporter activity
D0896_RS13320	COG1609	Transcriptional regulator
D0896_RS13325	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS13335	COG3037	sugar-specific permease SgaT UlaA
D0896_RS13340	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D0896_RS13350	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0896_RS13355	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
D0896_RS13355	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0896_RS13355	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0896_RS13370	COG0583	DNA-binding transcription factor activity
D0896_RS13375	COG0583	DNA-binding transcription factor activity
D0896_RS13380	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D0896_RS13390	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D0896_RS13405	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS13415	COG1609	Transcriptional regulator
D0896_RS13445	COG1652	LysM domain
D0896_RS13475	COG0456	acetyltransferase
D0896_RS13475	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
D0896_RS13485	COG0667	Aldo Keto reductase
D0896_RS13490	COG0667	Aldo Keto reductase
D0896_RS13495	COG3386	PFAM SMP-30 Gluconolaconase
D0896_RS13500	COG0667	Aldo Keto reductase
D0896_RS13515	COG2801	Transposase and inactivated derivatives
D0896_RS13520	COG1349	DNA-binding transcription factor activity
D0896_RS13535	COG1349	DNA-binding transcription factor activity
D0896_RS13540	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D0896_RS13545	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0896_RS13550	COG0738	Major facilitator superfamily
D0896_RS13575	COG0183	Belongs to the thiolase family
D0896_RS13595	COG1929	Belongs to the glycerate kinase type-1 family
D0896_RS13600	COG3835	regulator
D0896_RS13620	COG2186	Transcriptional regulator
D0896_RS13625	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0896_RS13625	COG1263	PTS System
D0896_RS13635	COG2814	Major facilitator Superfamily
D0896_RS13640	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS13640	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS13650	COG2819	hydrolase of the alpha beta superfamily
D0896_RS13655	COG3300	MHYT domain
D0896_RS13655	COG5001	Diguanylate cyclase
D0896_RS13690	COG3188	usher protein
D0896_RS13705	COG1649	PFAM Uncharacterised BCR, COG1649
D0896_RS13710	COG3550	peptidyl-serine autophosphorylation
D0896_RS13715	COG1396	sequence-specific DNA binding
D0896_RS13720	COG2351	hydroxyisourate hydrolase activity
D0896_RS13725	COG3195	allantoin biosynthetic process
D0896_RS13725	COG3648	Uricase
D0896_RS13730	COG2233	PERMEase
D0896_RS13760	COG2207	Transcriptional regulator
D0896_RS13775	COG4628	conserved protein (DUF2132)
D0896_RS13795	COG2011	ABC-type metal ion transport system permease component
D0896_RS13800	COG2070	2-Nitropropane dioxygenase
D0896_RS13810	COG0477	Major facilitator Superfamily
D0896_RS13865	COG2199	diguanylate cyclase activity
D0896_RS13880	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS13885	COG0583	DNA-binding transcription factor activity
D0896_RS13895	COG0039	L-malate dehydrogenase activity
D0896_RS13900	COG1349	DNA-binding transcription factor activity
D0896_RS13905	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
D0896_RS13910	COG3395	kinase activity
D0896_RS13920	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D0896_RS13925	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D0896_RS13930	COG2271	Major facilitator Superfamily
D0896_RS13955	COG4977	sequence-specific DNA binding
D0896_RS13965	COG0697	spore germination
D0896_RS13970	COG2814	Major facilitator Superfamily
D0896_RS13985	COG1129	ABC transporter
D0896_RS14005	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D0896_RS14040	COG2223	nitrite transmembrane transporter activity
D0896_RS14045	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
D0896_RS14060	COG1349	DNA-binding transcription factor activity
D0896_RS14075	COG3395	kinase activity
D0896_RS14080	COG0235	Class ii aldolase
D0896_RS14085	COG3622	Belongs to the hyi family
D0896_RS14090	COG2610	gluconate transmembrane transporter activity
D0896_RS14095	COG2207	Transcriptional regulator
D0896_RS14095	COG3708	Transcriptional regulator
D0896_RS14110	COG2200	EAL domain
D0896_RS14115	COG1546	Belongs to the CinA family
D0896_RS14120	COG0071	Belongs to the small heat shock protein (HSP20) family
D0896_RS14140	COG2135	peptidase activity
D0896_RS14145	COG2207	Transcriptional regulator
D0896_RS14155	COG0339	signal peptide processing
D0896_RS14160	COG4221	oxidoreductase activity
D0896_RS14165	COG1802	Transcriptional regulator
D0896_RS14170	COG0589	response to stress
D0896_RS14175	COG0246	Mannitol dehydrogenase
D0896_RS14180	COG2271	Major facilitator Superfamily
D0896_RS14195	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0896_RS14210	COG0243	molybdopterin cofactor binding
D0896_RS14215	COG0437	4 iron, 4 sulfur cluster binding
D0896_RS14220	COG3302	dmso reductase anchor subunit
D0896_RS14235	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
D0896_RS14240	COG1940	carbohydrate kinase activity
D0896_RS14245	COG0583	DNA-binding transcription factor activity
D0896_RS14250	COG2814	Major facilitator Superfamily
D0896_RS14255	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
D0896_RS14265	COG3591	Belongs to the peptidase S1B family
D0896_RS14285	COG0628	permease
D0896_RS14315	COG0679	Auxin Efflux Carrier
D0896_RS14325	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
D0896_RS14350	COG3290	protein histidine kinase activity
D0896_RS14355	COG4565	transcriptional regulatory protein
D0896_RS14380	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
D0896_RS14380	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
D0896_RS14400	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0896_RS14405	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
D0896_RS14415	COG0183	Belongs to the thiolase family
D0896_RS14420	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
D0896_RS14430	COG1414	Transcriptional regulator
D0896_RS14435	COG2840	Smr protein MutS2
D0896_RS14440	COG0583	DNA-binding transcription factor activity
D0896_RS14450	COG1473	amidohydrolase
D0896_RS14455	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
D0896_RS14470	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D0896_RS14485	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
D0896_RS14490	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
D0896_RS14510	COG0531	amino acid
D0896_RS14520	COG3136	membrane protein required for alginate biosynthesis
D0896_RS14525	COG0745	RESPONSE REGULATOR receiver
D0896_RS14535	COG2205	protein histidine kinase activity
D0896_RS14545	COG0114	fumarate hydratase activity
D0896_RS14550	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
D0896_RS14550	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
D0896_RS14555	COG1482	cell wall glycoprotein biosynthetic process
D0896_RS14560	COG5339	Protein conserved in bacteria
D0896_RS14565	COG1609	Transcriptional regulator
D0896_RS14570	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0896_RS14570	COG1263	PTS System
D0896_RS14575	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
D0896_RS14600	COG2391	methyltransferase activity
D0896_RS14605	COG0425	Belongs to the sulfur carrier protein TusA family
D0896_RS14610	COG5562	phage envelope protein
D0896_RS14615	COG0401	homolog of Blt101
D0896_RS14620	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D0896_RS14625	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS14630	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D0896_RS14635	COG0477	Major facilitator Superfamily
D0896_RS14640	COG1113	amino acid transport
D0896_RS14645	COG2988	succinylglutamate desuccinylase activity
D0896_RS14650	COG3724	N-succinylarginine dihydrolase activity
D0896_RS14655	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS14660	COG3138	arginine N-succinyltransferase
D0896_RS14665	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D0896_RS14670	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D0896_RS14675	COG0667	Aldo Keto reductase
D0896_RS14680	COG0583	DNA-binding transcription factor activity
D0896_RS14705	COG4122	O-methyltransferase activity
D0896_RS14710	COG1643	Atp-dependent helicase
D0896_RS14725	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D0896_RS14730	COG3327	negative regulation of DNA-templated transcription, initiation
D0896_RS14735	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
D0896_RS14740	COG0183	Belongs to the thiolase family
D0896_RS14745	COG2050	protein possibly involved in aromatic compounds catabolism
D0896_RS14750	COG1250	3-hydroxyacyl-CoA dehydrogenase
D0896_RS14755	COG1024	Enoyl-CoA hydratase
D0896_RS14760	COG1024	Enoyl-CoA hydratase
D0896_RS14765	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0896_RS14770	COG2151	metal-sulfur cluster biosynthetic enzyme
D0896_RS14775	COG3396	Phenylacetate-CoA oxygenase
D0896_RS14780	COG3460	Phenylacetate-CoA oxygenase
D0896_RS14785	COG3396	Phenylacetate-CoA oxygenase
D0896_RS14790	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS14790	COG2030	dehydratase
D0896_RS14815	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS14820	COG2207	Transcriptional regulator
D0896_RS14825	COG3784	Protein of unknown function (DUF1318)
D0896_RS14835	COG2911	Protein conserved in bacteria
D0896_RS14840	COG0586	Pfam SNARE associated Golgi protein
D0896_RS14845	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D0896_RS14850	COG3187	Heat shock protein
D0896_RS14855	COG3042	response to heat
D0896_RS14865	COG0674	pyruvate-flavodoxin oxidoreductase activity
D0896_RS14865	COG1013	pyruvate-flavodoxin oxidoreductase activity
D0896_RS14865	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
D0896_RS14865	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D0896_RS14870	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0896_RS14880	COG0589	response to stress
D0896_RS14890	COG0513	Belongs to the DEAD box helicase family
D0896_RS14910	COG1349	DNA-binding transcription factor activity
D0896_RS14915	COG0673	inositol 2-dehydrogenase activity
D0896_RS14930	COG1113	amino acid transport
D0896_RS14935	COG1522	sequence-specific DNA binding
D0896_RS14945	COG1448	Aminotransferase
D0896_RS14950	COG2011	ABC-type metal ion transport system permease component
D0896_RS14965	COG0436	Aminotransferase
D0896_RS14970	COG0604	alcohol dehydrogenase
D0896_RS14995	COG0583	DNA-binding transcription factor activity
D0896_RS15015	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS15020	COG1309	transcriptional regulator
D0896_RS15025	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS15100	COG2885	chlorophyll binding
D0896_RS15245	COG0740	serine-type endopeptidase activity
D0896_RS15250	COG4695	Portal protein
D0896_RS15255	COG4626	Terminase
D0896_RS15255	COG1802	Transcriptional regulator
D0896_RS15290	COG3772	lysozyme
D0896_RS15310	COG0484	heat shock protein binding
D0896_RS15395	COG0582	viral genome integration into host DNA
D0896_RS15400	COG0693	protein deglycase activity
D0896_RS15405	COG1078	dGTPase activity
D0896_RS15410	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS15415	COG0583	DNA-binding transcription factor activity
D0896_RS15435	COG0656	L-ascorbic acid biosynthetic process
D0896_RS15465	COG4166	transmembrane transport
D0896_RS15470	COG2866	Carboxypeptidase
D0896_RS15475	COG4948	Mandelate Racemase Muconate Lactonizing
D0896_RS15480	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
D0896_RS15485	COG3180	Ammonia monooxygenase
D0896_RS15495	COG1486	melibiose metabolic process
D0896_RS15500	COG0583	DNA-binding transcription factor activity
D0896_RS15510	COG3106	COG3106 Predicted ATPase
D0896_RS15520	COG1983	PspC domain protein
D0896_RS15530	COG1842	Phage shock protein A
D0896_RS15535	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D0896_RS15545	COG1473	amidohydrolase
D0896_RS15560	COG0702	epimerase
D0896_RS15575	COG4171	peptide transport system, permease
D0896_RS15590	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D0896_RS15600	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
D0896_RS15605	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0896_RS15605	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0896_RS15620	COG1349	DNA-binding transcription factor activity
D0896_RS15630	COG0023	Translation Initiation Factor
D0896_RS15640	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
D0896_RS15645	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
D0896_RS15650	COG0671	phosphoesterase, PA-phosphatase related
D0896_RS15660	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
D0896_RS15690	COG0616	signal peptide processing
D0896_RS15700	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS15705	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
D0896_RS15715	COG0583	DNA-binding transcription factor activity
D0896_RS15725	COG0009	L-threonylcarbamoyladenylate synthase
D0896_RS15735	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D0896_RS15740	COG0512	Glutamine amidotransferase of anthranilate synthase
D0896_RS15740	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D0896_RS15745	COG0134	indole-3-glycerol-phosphate synthase activity
D0896_RS15745	COG0135	phosphoribosylanthranilate isomerase activity
D0896_RS15800	COG4774	siderophore transport
D0896_RS15810	COG3047	cAMP biosynthetic process
D0896_RS15815	COG0727	PFAM Uncharacterised protein family (UPF0153)
D0896_RS15845	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0896_RS15850	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS15855	COG1988	membrane-bound metal-dependent
D0896_RS15860	COG1823	symporter activity
D0896_RS15870	COG0753	catalase activity
D0896_RS15880	COG1486	melibiose metabolic process
D0896_RS15885	COG2169	Transcriptional regulator
D0896_RS15885	COG1917	Cupin 2, conserved barrel domain protein
D0896_RS15890	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0896_RS15895	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS15900	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS15905	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0896_RS15915	COG0322	excinuclease ABC activity
D0896_RS15920	COG3678	ATP-independent chaperone mediated protein folding
D0896_RS15930	COG3724	N-succinylarginine dihydrolase activity
D0896_RS15940	COG3138	arginine N-succinyltransferase
D0896_RS15950	COG0708	Exodeoxyribonuclease III
D0896_RS15955	COG0398	Pfam SNARE associated Golgi protein
D0896_RS15960	COG0398	Pfam SNARE associated Golgi protein
D0896_RS15965	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0896_RS15970	COG4134	Bacterial extracellular solute-binding protein
D0896_RS15975	COG4135	transport system, permease component
D0896_RS15980	COG4136	ATPase activity
D0896_RS15985	COG2897	thiosulfate sulfurtransferase activity
D0896_RS15990	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D0896_RS15995	COG0494	nUDIX hydrolase
D0896_RS16000	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D0896_RS16005	COG0604	alcohol dehydrogenase
D0896_RS16005	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS16005	COG3321	synthase
D0896_RS16010	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D0896_RS16015	COG0709	Synthesizes selenophosphate from selenide and ATP
D0896_RS16035	COG0778	Nitroreductase
D0896_RS16040	COG0616	signal peptide processing
D0896_RS16045	COG0252	asparaginase activity
D0896_RS16050	COG1335	isochorismatase
D0896_RS16065	COG3139	Protein of unknown function (DUF1315)
D0896_RS16085	COG0656	L-ascorbic acid biosynthetic process
D0896_RS16090	COG3713	MltA-interacting MipA family protein
D0896_RS16095	COG2766	serine protein kinase
D0896_RS16125	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS16130	COG0583	DNA-binding transcription factor activity
D0896_RS16135	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D0896_RS16140	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
D0896_RS16150	COG0859	PFAM glycosyl transferase family 9
D0896_RS16155	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D0896_RS16165	COG2207	Transcriptional regulator
D0896_RS16170	COG2807	transmembrane transport
D0896_RS16175	COG0504	CTP synthase activity
D0896_RS16180	COG1683	Conserved Protein
D0896_RS16185	COG3189	MarR family transcriptional regulator
D0896_RS16190	COG3042	response to heat
D0896_RS16195	COG2203	Gaf domain
D0896_RS16195	COG2199	diguanylate cyclase activity
D0896_RS16215	COG3182	Iron-regulated membrane protein
D0896_RS16225	COG1560	Kdo2-lipid A biosynthetic process
D0896_RS16240	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
D0896_RS16245	COG3706	GGDEF domain
D0896_RS16250	COG0583	DNA-binding transcription factor activity
D0896_RS16255	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
D0896_RS16280	COG1294	oxidase, subunit
D0896_RS16285	COG1271	oxidase subunit
D0896_RS16290	COG3546	catalase activity
D0896_RS16295	COG3685	Protein conserved in bacteria
D0896_RS16300	COG3685	Protein conserved in bacteria
D0896_RS16305	COG3729	General stress protein
D0896_RS16310	COG1063	alcohol dehydrogenase
D0896_RS16315	COG3813	Protein conserved in bacteria
D0896_RS16335	COG0640	Transcriptional regulator
D0896_RS16340	COG0538	isocitrate dehydrogenase activity
D0896_RS16350	COG3300	MHYT domain
D0896_RS16350	COG5001	Diguanylate cyclase
D0896_RS16355	COG3706	GGDEF domain
D0896_RS16445	COG0616	signal peptide processing
D0896_RS16460	COG1802	Transcriptional regulator
D0896_RS16460	COG4626	Terminase
D0896_RS16490	COG3772	lysozyme
D0896_RS16515	COG1403	HNH endonuclease
D0896_RS16540	COG2378	regulation of single-species biofilm formation
D0896_RS16545	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS16605	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D0896_RS16615	COG0582	viral genome integration into host DNA
D0896_RS16620	COG0538	isocitrate dehydrogenase activity
D0896_RS16625	COG1187	pseudouridine synthase activity
D0896_RS16645	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
D0896_RS16665	COG2205	protein histidine kinase activity
D0896_RS16670	COG2850	peptidyl-arginine hydroxylation
D0896_RS16680	COG1943	Transposase
D0896_RS16705	COG1177	transmembrane transport
D0896_RS16720	COG0318	PFAM AMP-dependent synthetase and ligase
D0896_RS16725	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D0896_RS16730	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D0896_RS16735	COG0698	ribose 5-phosphate isomerase
D0896_RS16750	COG3395	kinase activity
D0896_RS16765	COG2390	Transcriptional regulator
D0896_RS16775	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
D0896_RS16785	COG4591	ABC-type transport system involved in lipoprotein release permease component
D0896_RS16795	COG4591	ABC-type transport system involved in lipoprotein release permease component
D0896_RS16800	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
D0896_RS16805	COG1388	LysM domain
D0896_RS16805	COG1376	ErfK ybiS ycfS ynhG family protein
D0896_RS16815	COG1309	transcriptional regulator
D0896_RS16825	COG3134	Outer membrane lipoprotein
D0896_RS16830	COG1252	NADH dehydrogenase
D0896_RS16855	COG5633	Lipoprotein
D0896_RS16860	COG0537	adenosine 5'-monophosphoramidase activity
D0896_RS16870	COG0084	hydrolase, TatD family'
D0896_RS16875	COG0470	DNA polymerase III
D0896_RS16885	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D0896_RS16890	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D0896_RS16895	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D0896_RS16910	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
D0896_RS16930	COG1399	metal-binding, possibly nucleic acid-binding protein
D0896_RS16950	COG1530	ribonuclease E activity
D0896_RS16955	COG0583	DNA-binding transcription factor activity
D0896_RS16960	COG2814	Major facilitator Superfamily
D0896_RS16980	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0896_RS17030	COG1560	Kdo2-lipid A biosynthetic process
D0896_RS17050	COG5645	(Lipo)protein
D0896_RS17090	COG3381	protein complex oligomerization
D0896_RS17115	COG0583	DNA-binding transcription factor activity
D0896_RS17125	COG1335	isochorismatase
D0896_RS17200	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0896_RS17205	COG1702	phosphate starvation-inducible protein PhoH
D0896_RS17225	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0896_RS17235	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D0896_RS17255	COG1309	transcriptional regulator
D0896_RS17290	COG2233	PERMEase
D0896_RS17300	COG3729	General stress protein
D0896_RS17325	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS17340	COG0531	amino acid
D0896_RS17350	COG0174	glutamine synthetase
D0896_RS17355	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
D0896_RS17360	COG1396	sequence-specific DNA binding
D0896_RS17360	COG1917	Cupin 2, conserved barrel domain protein
D0896_RS17365	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS17370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D0896_RS17375	COG0583	DNA-binding transcription factor activity
D0896_RS17380	COG0473	3-isopropylmalate dehydrogenase activity
D0896_RS17390	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0896_RS17395	COG4638	Rieske (2fe-2S)
D0896_RS17400	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS17405	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0896_RS17415	COG2200	EAL domain
D0896_RS17420	COG2200	EAL domain
D0896_RS17435	COG0670	Belongs to the BI1 family
D0896_RS17450	COG2207	Transcriptional regulator
D0896_RS17455	COG1881	PFAM PEBP family protein
D0896_RS17480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS17485	COG2274	protein secretion by the type I secretion system
D0896_RS17500	COG1832	CoA-binding protein
D0896_RS17510	COG0210	DNA helicase
D0896_RS17515	COG3304	Inner membrane component domain
D0896_RS17520	COG1289	transmembrane transporter activity
D0896_RS17525	COG3070	regulator of competence-specific genes
D0896_RS17550	COG1067	ATP-dependent peptidase activity
D0896_RS17560	COG3130	regulation of translation
D0896_RS17570	COG3009	Protein conserved in bacteria
D0896_RS17575	COG3008	intermembrane lipid transfer
D0896_RS17575	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D0896_RS17580	COG2995	paraquat-inducible protein a
D0896_RS17585	COG0488	(ABC) transporter
D0896_RS17595	COG0633	Ferredoxin
D0896_RS17595	COG3217	Mosc domain protein beta barrel domain protein
D0896_RS17610	COG0431	NADPH-dependent FMN reductase
D0896_RS17615	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0896_RS17620	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0896_RS17625	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0896_RS17635	COG0308	aminopeptidase N
D0896_RS17650	COG1473	amidohydrolase
D0896_RS17660	COG0814	amino acid
D0896_RS17670	COG1522	sequence-specific DNA binding
D0896_RS17680	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0896_RS17685	COG1448	Aminotransferase
D0896_RS17690	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D0896_RS17695	COG3108	Peptidase M15
D0896_RS17705	COG2989	Protein conserved in bacteria
D0896_RS17715	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
D0896_RS17725	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
D0896_RS17730	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D0896_RS17735	COG3173	Aminoglycoside phosphotransferase
D0896_RS17750	COG3214	Protein conserved in bacteria
D0896_RS17765	COG2333	competence protein COMEC
D0896_RS17765	COG0658	competence protein
D0896_RS17775	COG0539	negative regulation of cytoplasmic translation
D0896_RS17795	COG2323	membrane
D0896_RS17800	COG1944	ATP diphosphatase activity
D0896_RS17805	COG2116	formate transmembrane transporter activity
D0896_RS17810	COG1882	Formate acetyltransferase
D0896_RS17815	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0896_RS17820	COG0477	Major facilitator Superfamily
D0896_RS17830	COG3302	dmso reductase anchor subunit
D0896_RS17835	COG0437	4 iron, 4 sulfur cluster binding
D0896_RS17840	COG0243	molybdopterin cofactor binding
D0896_RS17850	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
D0896_RS17860	COG1178	ABC-type Fe3 transport system permease component
D0896_RS17860	COG1674	ftsk spoiiie
D0896_RS17870	COG0492	ferredoxin-NADP+ reductase activity
D0896_RS17875	COG4988	ABC transporter
D0896_RS17880	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
D0896_RS17895	COG0542	response to heat
D0896_RS17905	COG1278	Cold shock
D0896_RS17920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS17925	COG3593	DNA synthesis involved in DNA repair
D0896_RS17935	COG2431	L-lysine efflux transmembrane transporter activity
D0896_RS17945	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0896_RS17955	COG0028	Belongs to the TPP enzyme family
D0896_RS17960	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
D0896_RS17965	COG0702	epimerase
D0896_RS17970	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D0896_RS17975	COG3023	N-Acetylmuramoyl-L-alanine amidase
D0896_RS17980	COG5001	Diguanylate cyclase
D0896_RS17980	COG4251	negative regulation of phosphorylation
D0896_RS17980	COG3706	GGDEF domain
D0896_RS17980	COG2203	Gaf domain
D0896_RS17995	COG1126	abc transporter atp-binding protein
D0896_RS18000	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS18005	COG4215	(ABC) transporter
D0896_RS18010	COG4160	amino acid transport
D0896_RS18015	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS18020	COG5002	protein histidine kinase activity
D0896_RS18025	COG0745	RESPONSE REGULATOR receiver
D0896_RS18040	COG1177	transmembrane transport
D0896_RS18045	COG1176	ABC-type spermidine putrescine transport system, permease component I
D0896_RS18050	COG3842	ATPase activity
D0896_RS18055	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D0896_RS18070	COG0778	Nitroreductase
D0896_RS18095	COG3226	Transcriptional regulator
D0896_RS18100	COG0738	Major facilitator superfamily
D0896_RS18105	COG0561	phosphatase activity
D0896_RS18110	COG2814	Major facilitator Superfamily
D0896_RS18120	COG0671	phosphoesterase, PA-phosphatase related
D0896_RS18125	COG1349	DNA-binding transcription factor activity
D0896_RS18130	COG1686	Belongs to the peptidase S11 family
D0896_RS18135	COG0625	glutathione transferase activity
D0896_RS18140	COG2133	pyrroloquinoline quinone binding
D0896_RS18150	COG2223	nitrite transmembrane transporter activity
D0896_RS18175	COG0747	negative chemotaxis
D0896_RS18190	COG0303	'Molybdopterin
D0896_RS18195	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D0896_RS18200	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0896_RS18205	COG1882	Formate acetyltransferase
D0896_RS18210	COG0561	phosphatase activity
D0896_RS18220	COG1609	Transcriptional regulator
D0896_RS18225	COG2271	Major facilitator Superfamily
D0896_RS18240	COG0488	(ABC) transporter
D0896_RS18245	COG2365	Tyrosine phosphatase family
D0896_RS18250	COG1376	ErfK ybiS ycfS ynhG family protein
D0896_RS18255	COG2188	Transcriptional regulator
D0896_RS18260	COG2723	6-phospho-beta-galactosidase activity
D0896_RS18265	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D0896_RS18280	COG2194	sulfuric ester hydrolase activity
D0896_RS18285	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D0896_RS18300	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS18305	COG0765	amino acid transport
D0896_RS18310	COG1126	abc transporter atp-binding protein
D0896_RS18315	COG0668	transmembrane transport
D0896_RS18325	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D0896_RS18335	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D0896_RS18345	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D0896_RS18350	COG1199	ATP-dependent helicase activity
D0896_RS18355	COG0513	Belongs to the DEAD box helicase family
D0896_RS18360	COG3958	Transketolase
D0896_RS18365	COG3959	Transketolase, thiamine diphosphate binding domain
D0896_RS18370	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS18375	COG2271	Major facilitator Superfamily
D0896_RS18380	COG0583	DNA-binding transcription factor activity
D0896_RS18385	COG1309	transcriptional regulator
D0896_RS18390	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS18395	COG1131	(ABC) transporter
D0896_RS18400	COG0842	Transport permease protein
D0896_RS18405	COG0842	Transport permease protein
D0896_RS18420	COG3568	Endonuclease Exonuclease Phosphatase
D0896_RS18425	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D0896_RS18430	COG0392	lysyltransferase activity
D0896_RS18435	COG0670	Belongs to the BI1 family
D0896_RS18440	COG0314	molybdopterin synthase activity
D0896_RS18445	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
D0896_RS18455	COG0521	Mo-molybdopterin cofactor biosynthetic process
D0896_RS18480	COG0745	RESPONSE REGULATOR receiver
D0896_RS18485	COG0642	Histidine kinase
D0896_RS18520	COG2226	methyltransferase
D0896_RS18540	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D0896_RS18545	COG1881	PFAM PEBP family protein
D0896_RS18585	COG4677	pectinesterase activity
D0896_RS18595	COG0589	response to stress
D0896_RS18600	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS18630	COG0789	Transcriptional regulator
D0896_RS18635	COG2200	EAL domain
D0896_RS18660	COG0561	phosphatase activity
D0896_RS18670	COG4149	molybdate abc transporter
D0896_RS18675	COG0725	ABC transporter, periplasmic molybdate-binding protein
D0896_RS18685	COG2005	Transcriptional regulator
D0896_RS18685	COG3585	molybdate ion transport
D0896_RS18690	COG1119	ATPase activity
D0896_RS18700	COG1085	galactose-1-phosphate uridylyltransferase
D0896_RS18710	COG2017	converts alpha-aldose to the beta-anomer
D0896_RS18720	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0896_RS18735	COG3201	nicotinamide mononucleotide transporter
D0896_RS18740	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
D0896_RS18790	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
D0896_RS18795	COG2885	chlorophyll binding
D0896_RS18805	COG3064	Membrane
D0896_RS18810	COG0848	biopolymer transport protein
D0896_RS18815	COG0811	peptide transport
D0896_RS18820	COG0824	Thioesterase
D0896_RS18825	COG3790	cyd operon protein YbgE
D0896_RS18830	COG4890	Cyd operon protein YbgT
D0896_RS18835	COG1294	oxidase, subunit
D0896_RS18840	COG1271	oxidase subunit
D0896_RS18845	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D0896_RS18855	COG0508	dehydrogenase complex catalyzes the overall conversion of
D0896_RS18860	COG0567	Dehydrogenase, E1 component
D0896_RS18865	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D0896_RS18870	COG1053	succinate dehydrogenase
D0896_RS18875	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
D0896_RS18880	COG2009	succinate dehydrogenase
D0896_RS18925	COG1984	allophanate hydrolase subunit 2
D0896_RS18930	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
D0896_RS18945	COG0415	Belongs to the DNA photolyase family
D0896_RS18975	COG2205	protein histidine kinase activity
D0896_RS18980	COG0745	RESPONSE REGULATOR receiver
D0896_RS18990	COG0033	Phosphoglucomutase
D0896_RS19000	COG0596	Alpha beta hydrolase
D0896_RS19015	COG0735	belongs to the Fur family
D0896_RS19065	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D0896_RS19070	COG1846	Transcriptional regulator
D0896_RS19070	COG1940	carbohydrate kinase activity
D0896_RS19075	COG0647	UMP catabolic process
D0896_RS19080	COG0367	asparagine synthase
D0896_RS19125	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0896_RS19135	COG1702	phosphate starvation-inducible protein PhoH
D0896_RS19160	COG0765	amino acid transport
D0896_RS19165	COG0765	amino acid transport
D0896_RS19170	COG1126	abc transporter atp-binding protein
D0896_RS19185	COG2888	peptidyl-tyrosine sulfation
D0896_RS19200	COG1466	dna polymerase III delta subunit
D0896_RS19220	COG0799	negative regulation of ribosome biogenesis
D0896_RS19230	COG0768	penicillin binding
D0896_RS19235	COG0772	Belongs to the SEDS family
D0896_RS19240	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D0896_RS19245	COG1686	Belongs to the peptidase S11 family
D0896_RS19260	COG0583	DNA-binding transcription factor activity
D0896_RS19275	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D0896_RS19295	COG3069	C4-dicarboxylate transmembrane transporter activity
D0896_RS19300	COG3719	Belongs to the RNase T2 family
D0896_RS19305	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D0896_RS19325	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0896_RS19330	COG0583	DNA-binding transcription factor activity
D0896_RS19335	COG3969	phosphoadenosine phosphosulfate
D0896_RS19340	COG1475	DNA binding
D0896_RS19345	COG0436	Aminotransferase
D0896_RS19370	COG1129	ABC transporter
D0896_RS19375	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS19380	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS19390	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D0896_RS19405	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D0896_RS19415	COG0402	S-adenosylhomocysteine deaminase activity
D0896_RS19425	COG0483	inositol monophosphate 1-phosphatase activity
D0896_RS19430	COG2271	Major facilitator Superfamily
D0896_RS19460	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS19465	COG1129	ABC transporter
D0896_RS19470	COG0371	Dehydrogenase
D0896_RS19475	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS19490	COG2879	small protein
D0896_RS19495	COG1966	Carbon starvation protein
D0896_RS19510	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS19515	COG3433	isochorismatase activity
D0896_RS19515	COG1535	isochorismatase
D0896_RS19520	COG1021	2,3-dihydroxybenzoate-AMP ligase
D0896_RS19525	COG1169	isochorismate synthase
D0896_RS19530	COG4592	Periplasmic binding protein
D0896_RS19540	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS19545	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS19550	COG1120	ATPase activity
D0896_RS19555	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
D0896_RS19555	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D0896_RS19560	COG3251	PFAM MbtH domain protein
D0896_RS19565	COG2382	esterase
D0896_RS19570	COG4771	TonB-dependent receptor
D0896_RS19580	COG1879	ABC-type sugar transport system periplasmic component
D0896_RS19590	COG1129	ABC transporter
D0896_RS19595	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS19600	COG5464	transposase or invertase
D0896_RS19605	COG2390	Transcriptional regulator
D0896_RS19610	COG3959	Transketolase, thiamine diphosphate binding domain
D0896_RS19615	COG3958	Transketolase
D0896_RS19625	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
D0896_RS19635	COG0583	DNA-binding transcription factor activity
D0896_RS19640	COG0668	transmembrane transport
D0896_RS19650	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0896_RS19680	COG0747	negative chemotaxis
D0896_RS19685	COG0601	transmembrane transport
D0896_RS19690	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS19695	COG0444	Belongs to the ABC transporter superfamily
D0896_RS19700	COG4608	Belongs to the ABC transporter superfamily
D0896_RS19715	COG0656	L-ascorbic acid biosynthetic process
D0896_RS19740	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D0896_RS19745	COG4221	oxidoreductase activity
D0896_RS19755	COG4215	(ABC) transporter
D0896_RS19760	COG0765	amino acid transport
D0896_RS19765	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
D0896_RS19780	COG0697	spore germination
D0896_RS19795	COG4608	Belongs to the ABC transporter superfamily
D0896_RS19800	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS19810	COG4166	transmembrane transport
D0896_RS19820	COG3698	Phosphodiester glycosidase
D0896_RS19865	COG2315	Protein conserved in bacteria
D0896_RS19870	COG0778	Nitroreductase
D0896_RS19880	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0896_RS19890	COG3716	PTS system mannose fructose sorbose family IID component
D0896_RS19895	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D0896_RS19900	COG2222	sugar isomerase
D0896_RS19905	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D0896_RS19905	COG3933	PFAM sigma-54 factor interaction domain-containing protein
D0896_RS19925	COG0477	Major facilitator Superfamily
D0896_RS19930	COG0668	transmembrane transport
D0896_RS19935	COG1609	Transcriptional regulator
D0896_RS19945	COG0673	inositol 2-dehydrogenase activity
D0896_RS19955	COG2211	Major facilitator Superfamily
D0896_RS19960	COG1113	amino acid transport
D0896_RS19975	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS19980	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D0896_RS19990	COG0531	amino acid
D0896_RS20005	COG4680	protein conserved in bacteria
D0896_RS20045	COG0667	Aldo Keto reductase
D0896_RS20050	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS20055	COG1473	amidohydrolase
D0896_RS20075	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS20080	COG1120	ATPase activity
D0896_RS20085	COG1566	PFAM secretion protein HlyD family protein
D0896_RS20130	COG4211	Belongs to the binding-protein-dependent transport system permease family
D0896_RS20135	COG1129	ABC transporter
D0896_RS20150	COG0673	inositol 2-dehydrogenase activity
D0896_RS20185	COG3104	oligopeptide transport
D0896_RS20190	COG1982	Orn Lys Arg decarboxylase major
D0896_RS20195	COG0531	amino acid
D0896_RS20205	COG3710	Transcriptional regulator
D0896_RS20215	COG1560	Kdo2-lipid A biosynthetic process
D0896_RS20265	COG2501	S4 domain
D0896_RS20275	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D0896_RS20295	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
D0896_RS20300	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
D0896_RS20315	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
D0896_RS20320	COG4181	ATPase activity
D0896_RS20325	COG2755	lipolytic protein G-D-S-L family
D0896_RS20330	COG0300	oxidoreductase activity
D0896_RS20335	COG3118	belongs to the thioredoxin family
D0896_RS20345	COG0390	transport system, permease component
D0896_RS20350	COG4619	ABC transporter
D0896_RS20355	COG0330	HflC and HflK could
D0896_RS20360	COG1585	Membrane protein implicated in regulation of membrane protease activity
D0896_RS20375	COG3735	TraB family
D0896_RS20380	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D0896_RS20390	COG2223	nitrite transmembrane transporter activity
D0896_RS20395	COG4651	solute:proton antiporter activity
D0896_RS20395	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D0896_RS20400	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0896_RS20445	COG2832	Protein of unknown function (DUF454)
D0896_RS20450	COG3923	Primosomal replication protein n
D0896_RS20465	COG1196	nuclear chromosome segregation
D0896_RS20465	COG3264	Mechanosensitive ion channel
D0896_RS20470	COG1309	transcriptional regulator
D0896_RS20475	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS20480	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0896_RS20495	COG0110	maltose O-acetyltransferase activity
D0896_RS20540	COG1874	Beta-galactosidase
D0896_RS20545	COG3867	Arabinogalactan endo-beta-1,4-galactanase
D0896_RS20550	COG3833	ABC-type maltose transport systems, permease component
D0896_RS20555	COG1175	transmembrane transport
D0896_RS20560	COG2182	Extracellular solute-binding protein
D0896_RS20570	COG4943	cyclic-guanylate-specific phosphodiesterase activity
D0896_RS20585	COG2364	Membrane
D0896_RS20655	COG3695	enzyme binding
D0896_RS20660	COG3126	Type III secretion system lipoprotein chaperone (YscW)
D0896_RS20665	COG1946	Acyl-CoA thioesterase
D0896_RS20670	COG0004	ammonium transporteR
D0896_RS20675	COG0347	Belongs to the P(II) protein family
D0896_RS20680	COG1132	(ABC) transporter
D0896_RS20685	COG1132	(ABC) transporter
D0896_RS20690	COG1522	sequence-specific DNA binding
D0896_RS20705	COG4533	DNA binding
D0896_RS20715	COG0824	Thioesterase
D0896_RS20720	COG1555	photosystem II stabilization
D0896_RS20725	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0896_RS20730	COG0776	regulation of translation
D0896_RS20735	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
D0896_RS20765	COG0271	Belongs to the BolA IbaG family
D0896_RS20770	COG3056	Lipoprotein
D0896_RS20775	COG2223	nitrite transmembrane transporter activity
D0896_RS20780	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
D0896_RS20785	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D0896_RS20790	COG1845	cytochrome c oxidase, subunit III
D0896_RS20795	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
D0896_RS20810	COG1414	Transcriptional regulator
D0896_RS20815	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
D0896_RS20820	COG1053	succinate dehydrogenase
D0896_RS20830	COG1053	succinate dehydrogenase
D0896_RS20845	COG0673	inositol 2-dehydrogenase activity
D0896_RS20850	COG2814	Major facilitator Superfamily
D0896_RS20860	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
D0896_RS20865	COG0693	protein deglycase activity
D0896_RS20885	COG0142	geranyltranstransferase activity
D0896_RS20895	COG0667	Aldo Keto reductase
D0896_RS20900	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D0896_RS20920	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D0896_RS20920	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D0896_RS20930	COG4238	major outer membrane lipoprotein
D0896_RS20950	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D0896_RS20955	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D0896_RS20960	COG1862	Preprotein translocase
D0896_RS20980	COG0450	alkyl hydroperoxide reductase
D0896_RS20985	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS21000	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0896_RS21010	COG1228	amidohydrolase
D0896_RS21020	COG1335	isochorismatase
D0896_RS21025	COG0583	DNA-binding transcription factor activity
D0896_RS21030	COG0366	Alpha amylase catalytic
D0896_RS21055	COG0420	3'-5' exonuclease activity
D0896_RS21060	COG0419	ATPase involved in DNA repair
D0896_RS21065	COG1940	carbohydrate kinase activity
D0896_RS21080	COG4126	flavin adenine dinucleotide binding
D0896_RS21090	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
D0896_RS21095	COG3416	Protein conserved in bacteria
D0896_RS21105	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D0896_RS21115	COG1785	Belongs to the alkaline phosphatase family
D0896_RS21155	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
D0896_RS21160	COG1335	isochorismatase
D0896_RS21165	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D0896_RS21170	COG0113	porphobilinogen synthase activity
D0896_RS21180	COG2175	clavaminate synthase activity
D0896_RS21185	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0896_RS21190	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
D0896_RS21195	COG4521	taurine ABC transporter
D0896_RS21200	COG2040	homocysteine
D0896_RS21205	COG0833	amino acid
D0896_RS21215	COG4303	Ethanolamine ammonia lyase large subunit
D0896_RS21220	COG4302	ethanolamine ammonia-lyase activity
D0896_RS21260	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS21265	COG1126	abc transporter atp-binding protein
D0896_RS21270	COG4597	amino acid ABC transporter
D0896_RS21275	COG0765	amino acid transport
D0896_RS21290	COG3188	usher protein
D0896_RS21315	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
D0896_RS21325	COG3639	organic phosphonate transmembrane transporter activity
D0896_RS21355	COG0791	NLP P60 protein
D0896_RS21390	COG3188	usher protein
D0896_RS21395	COG3121	Chaperone
D0896_RS21400	COG3539	Fimbrial protein
D0896_RS21420	COG3710	Transcriptional regulator
D0896_RS21450	COG2200	EAL domain
D0896_RS21470	COG3121	Chaperone
D0896_RS21495	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
D0896_RS21515	COG0579	oxidoreductase
D0896_RS21520	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS21525	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D0896_RS21530	COG1113	amino acid transport
D0896_RS21535	COG1802	Transcriptional regulator
D0896_RS21555	COG2195	Cleaves the N-terminal amino acid of tripeptides
D0896_RS21560	COG0454	-acetyltransferase
D0896_RS21575	COG2991	Protein conserved in bacteria
D0896_RS21590	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
D0896_RS21595	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
D0896_RS21615	COG3034	peptidoglycan biosynthetic process
D0896_RS21620	COG0121	glutamine amidotransferase
D0896_RS21630	COG1960	acyl-CoA dehydrogenase activity
D0896_RS21635	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D0896_RS21645	COG0583	DNA-binding transcription factor activity
D0896_RS21660	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D0896_RS21670	COG2226	methyltransferase
D0896_RS21680	COG1388	LysM domain
D0896_RS21680	COG0741	lytic transglycosylase activity
D0896_RS21685	COG2226	methyltransferase
D0896_RS21695	COG2814	Major facilitator Superfamily
D0896_RS21700	COG0583	DNA-binding transcription factor activity
D0896_RS21705	COG0656	L-ascorbic acid biosynthetic process
D0896_RS21745	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
D0896_RS21755	COG2011	ABC-type metal ion transport system permease component
D0896_RS21760	COG1464	Belongs to the NlpA lipoprotein family
D0896_RS21770	COG1720	tRNA m6t6A37 methyltransferase activity
D0896_RS21780	COG0791	NLP P60 protein
D0896_RS21785	COG3015	lipoprotein NlpE involved in copper resistance
D0896_RS21790	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
D0896_RS21805	COG4568	rho-dependent transcription termination
D0896_RS21815	COG0346	lactoylglutathione lyase activity
D0896_RS21820	COG1982	Orn Lys Arg decarboxylase major
D0896_RS21830	COG0587	DNA-directed DNA polymerase activity
D0896_RS21860	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
D0896_RS21870	COG0750	zinc metalloprotease
D0896_RS21875	COG0575	Belongs to the CDS family
D0896_RS21890	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
D0896_RS21915	COG0024	Methionine aminopeptidase
D0896_RS21920	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
D0896_RS21935	COG3835	regulator
D0896_RS21940	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0896_RS21960	COG2860	membrane
D0896_RS21980	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS21985	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D0896_RS21990	COG1120	ATPase activity
D0896_RS21995	COG4774	siderophore transport
D0896_RS22000	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D0896_RS22090	COG1643	Atp-dependent helicase
D0896_RS22095	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
D0896_RS22115	COG0617	tRNA 3'-terminal CCA addition
D0896_RS22120	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
D0896_RS22140	COG0726	polysaccharide deacetylase
D0896_RS22145	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS22150	COG0842	Transport permease protein
D0896_RS22155	COG1131	(ABC) transporter
D0896_RS22160	COG0288	reversible hydration of carbon dioxide
D0896_RS22170	COG4993	Dehydrogenase
D0896_RS22175	COG2132	Multicopper oxidase
D0896_RS22220	COG3064	Membrane
D0896_RS22235	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D0896_RS22240	COG0508	dehydrogenase complex catalyzes the overall conversion of
D0896_RS22245	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
D0896_RS22250	COG2186	Transcriptional regulator
D0896_RS22255	COG1113	amino acid transport
D0896_RS22260	COG2211	Major facilitator Superfamily
D0896_RS22265	COG3940	Belongs to the glycosyl hydrolase 43 family
D0896_RS22270	COG3725	Membrane protein required for beta-lactamase induction
D0896_RS22275	COG3023	N-Acetylmuramoyl-L-alanine amidase
D0896_RS22285	COG4969	Belongs to the N-Me-Phe pilin family
D0896_RS22290	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D0896_RS22295	COG1459	type II secretion system
D0896_RS22320	COG0494	nUDIX hydrolase
D0896_RS22340	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
D0896_RS22345	COG0849	cell division
D0896_RS22370	COG0772	Belongs to the SEDS family
D0896_RS22385	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
D0896_RS22390	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
D0896_RS22395	COG0768	penicillin binding
D0896_RS22420	COG1609	Transcriptional regulator
D0896_RS22430	COG0028	Belongs to the TPP enzyme family
D0896_RS22480	COG0738	Major facilitator superfamily
D0896_RS22490	COG0583	DNA-binding transcription factor activity
D0896_RS22495	COG2271	Major facilitator Superfamily
D0896_RS22500	COG2814	Major facilitator Superfamily
D0896_RS22520	COG1178	ABC-type Fe3 transport system permease component
D0896_RS22530	COG0586	Pfam SNARE associated Golgi protein
D0896_RS22550	COG0235	Class ii aldolase
D0896_RS22555	COG0417	DNA replication proofreading
D0896_RS22565	COG0564	pseudouridine synthase activity
D0896_RS22580	COG3493	citrate carrier protein
D0896_RS22595	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
D0896_RS22600	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
D0896_RS22610	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
D0896_RS22660	COG0505	Belongs to the CarA family
D0896_RS22730	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
D0896_RS22755	COG1047	Peptidyl-prolyl cis-trans
D0896_RS22770	COG0196	riboflavin kinase activity
D0896_RS22785	COG0583	DNA-binding transcription factor activity
D0896_RS22810	COG4735	regulation of single-species biofilm formation
D0896_RS22815	COG1584	GPR1 FUN34 yaaH family protein
D0896_RS22820	COG0477	Major facilitator Superfamily
D0896_RS22825	COG0521	Mo-molybdopterin cofactor biosynthetic process
D0896_RS22830	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D0896_RS22835	COG1115	amino acid carrier protein
D0896_RS22850	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
D0896_RS22860	COG0527	aspartate kinase activity
D0896_RS22860	COG0460	homoserine dehydrogenase
D0896_RS22870	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
D0896_RS22885	COG0745	RESPONSE REGULATOR receiver
D0896_RS22890	COG4452	Inner membrane protein CreD
D0896_RS22895	COG2205	protein histidine kinase activity
D0896_RS22900	COG0745	RESPONSE REGULATOR receiver
D0896_RS22905	COG3045	CreA protein
D0896_RS22910	COG2207	Transcriptional regulator
D0896_RS22910	COG3708	Transcriptional regulator
D0896_RS22930	COG0741	lytic transglycosylase activity
D0896_RS22940	COG0488	(ABC) transporter
D0896_RS22950	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
D0896_RS22955	COG0560	Phosphoserine phosphatase
D0896_RS22965	COG3726	membrane protein affecting hemolysin expression
D0896_RS22995	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0896_RS23000	COG0084	hydrolase, TatD family'
D0896_RS23005	COG4667	esterase of the alpha-beta hydrolase superfamily
D0896_RS23015	COG2823	Periplasmic or secreted lipoprotein
D0896_RS23025	COG1011	Hydrolase
D0896_RS23030	COG0456	acetyltransferase
D0896_RS23035	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
D0896_RS23065	COG3706	GGDEF domain
D0896_RS23070	COG4114	ferric iron reductase
D0896_RS23075	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS23075	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS23080	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D0896_RS23085	COG2197	response regulator
D0896_RS23090	COG2197	response regulator
D0896_RS23110	COG2966	Psort location CytoplasmicMembrane, score
D0896_RS23125	COG1484	DNA-dependent DNA replication
D0896_RS23140	COG5464	transposase or invertase
D0896_RS23150	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D0896_RS23155	COG3716	PTS system mannose fructose sorbose family IID component
D0896_RS23160	COG3715	PTS system
D0896_RS23175	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D0896_RS23175	COG3933	PFAM sigma-54 factor interaction domain-containing protein
D0896_RS23180	COG1214	PFAM Peptidase M22, glycoprotease
D0896_RS23180	COG0456	acetyltransferase
D0896_RS23190	COG1737	Transcriptional regulator
D0896_RS23195	COG0800	Aldolase
D0896_RS23200	COG3734	2-keto-3-deoxy-galactonokinase
D0896_RS23205	COG4145	pantothenate transmembrane transporter activity
D0896_RS23215	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
D0896_RS23235	COG0531	amino acid
D0896_RS23240	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS23245	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D0896_RS23260	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D0896_RS23260	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
D0896_RS23275	COG1846	Transcriptional regulator
D0896_RS23280	COG0179	Fumarylacetoacetate (FAA) hydrolase
D0896_RS23290	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS23295	COG3384	dioxygenase
D0896_RS23305	COG3971	2-oxopent-4-enoate hydratase activity
D0896_RS23325	COG2368	4-hydroxyphenylacetate
D0896_RS23330	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D0896_RS23335	COG1966	Carbon starvation protein
D0896_RS23340	COG2879	small protein
D0896_RS23345	COG0523	cobalamin synthesis protein
D0896_RS23355	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS23360	COG5464	transposase or invertase
D0896_RS23365	COG1917	Cupin 2, conserved barrel domain protein
D0896_RS23365	COG2207	Transcriptional regulator
D0896_RS23375	COG2733	membrane
D0896_RS23390	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
D0896_RS23395	COG1924	4 iron, 4 sulfur cluster binding
D0896_RS23410	COG1566	PFAM secretion protein HlyD family protein
D0896_RS23420	COG5457	Domain of unknown function (DUF1127)
D0896_RS23425	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0896_RS23435	COG0583	DNA-binding transcription factor activity
D0896_RS23440	COG2249	NAD(P)H dehydrogenase (quinone) activity
D0896_RS23475	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS23475	COG1454	alcohol dehydrogenase
D0896_RS23490	COG1882	Formate acetyltransferase
D0896_RS23495	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0896_RS23505	COG4869	propanediol catabolic process
D0896_RS23530	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS23535	COG1129	ABC transporter
D0896_RS23535	COG0842	Transport permease protein
D0896_RS23540	COG0842	Transport permease protein
D0896_RS23575	COG2850	peptidyl-arginine hydroxylation
D0896_RS23590	COG5002	protein histidine kinase activity
D0896_RS23595	COG0745	RESPONSE REGULATOR receiver
D0896_RS23600	COG1538	Outer membrane efflux protein
D0896_RS23605	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS23610	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS23615	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0896_RS23625	COG3040	lipid binding
D0896_RS23630	COG0789	Transcriptional regulator
D0896_RS23640	COG0300	oxidoreductase activity
D0896_RS23655	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
D0896_RS23675	COG3272	Protein of unknown function (DUF1722)
D0896_RS23680	COG4580	involved in the transport of maltose and maltodextrins
D0896_RS23685	COG2115	Belongs to the xylose isomerase family
D0896_RS23690	COG2211	Major facilitator Superfamily
D0896_RS23695	COG3507	Belongs to the glycosyl hydrolase 43 family
D0896_RS23715	COG1216	Glycosyl transferase, family 2
D0896_RS23765	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0896_RS23800	COG2003	Belongs to the UPF0758 family
D0896_RS23820	COG3596	GTP binding
D0896_RS23845	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
D0896_RS23860	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
D0896_RS23885	COG0582	viral genome integration into host DNA
D0896_RS23900	COG0288	reversible hydration of carbon dioxide
D0896_RS23905	COG0659	secondary active sulfate transmembrane transporter activity
D0896_RS23910	COG1064	alcohol dehydrogenase
D0896_RS23915	COG1175	transmembrane transport
D0896_RS23920	COG0395	ABC-type sugar transport system, permease component
D0896_RS23925	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D0896_RS23930	COG3842	ATPase activity
D0896_RS23950	COG1082	Xylose isomerase domain protein TIM barrel
D0896_RS23960	COG3962	Belongs to the TPP enzyme family
D0896_RS23965	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0896_RS23970	COG0837	glucose binding
D0896_RS23970	COG1737	Transcriptional regulator
D0896_RS23985	COG3718	enzyme involved in inositol metabolism
D0896_RS24000	COG0433	COG0433 Predicted ATPase
D0896_RS24005	COG0795	lipopolysaccharide-transporting ATPase activity
D0896_RS24010	COG0795	lipopolysaccharide-transporting ATPase activity
D0896_RS24025	COG2927	DNA polymerase III (CHI subunit)
D0896_RS24030	COG0525	valine-tRNA ligase activity
D0896_RS24055	COG2188	Transcriptional regulator
D0896_RS24060	COG1288	antiporter activity
D0896_RS24065	COG1228	amidohydrolase
D0896_RS24070	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0896_RS24075	COG2222	sugar isomerase
D0896_RS24080	COG2731	YhcH YjgK YiaL family protein
D0896_RS24125	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0896_RS24125	COG1263	PTS System
D0896_RS24130	COG0366	Alpha amylase catalytic
D0896_RS24135	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0896_RS24140	COG1486	melibiose metabolic process
D0896_RS24160	COG0602	queuosine metabolic process
D0896_RS24165	COG2026	Addiction module toxin, RelE StbE family
D0896_RS24170	COG3077	Addiction module antitoxin, RelB DinJ family
D0896_RS24175	COG3711	transcriptional antiterminator
D0896_RS24175	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0896_RS24180	COG2706	6-phosphogluconolactonase activity
D0896_RS24195	COG3964	amidohydrolase
D0896_RS24230	COG0312	modulator of DNA gyrase
D0896_RS24250	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
D0896_RS24260	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS24265	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS24270	COG1129	ABC transporter
D0896_RS24275	COG1879	ABC-type sugar transport system periplasmic component
D0896_RS24295	COG2105	PFAM AIG2 family protein
D0896_RS24300	COG2911	Protein conserved in bacteria
D0896_RS24305	COG0729	surface antigen
D0896_RS24315	COG1253	flavin adenine dinucleotide binding
D0896_RS24340	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
D0896_RS24355	COG1733	regulation of RNA biosynthetic process
D0896_RS24360	COG0702	epimerase
D0896_RS24370	COG0697	spore germination
D0896_RS24380	COG1113	amino acid transport
D0896_RS24385	COG0545	Peptidyl-prolyl cis-trans isomerase
D0896_RS24390	COG3061	Opacity-associated protein A
D0896_RS24400	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
D0896_RS24405	COG2965	DNA replication, synthesis of RNA primer
D0896_RS24465	COG1073	alpha beta
D0896_RS24470	COG3650	response to hydrogen peroxide
D0896_RS24480	COG1960	acyl-CoA dehydrogenase activity
D0896_RS24485	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0896_RS24490	COG0557	exoribonuclease II activity
D0896_RS24505	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
D0896_RS24515	COG0330	HflC and HflK could
D0896_RS24520	COG0330	HflC and HflK could
D0896_RS24525	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
D0896_RS24545	COG0860	N-Acetylmuramoyl-L-alanine amidase
D0896_RS24550	COG0802	atpase or kinase
D0896_RS24555	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
D0896_RS24555	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
D0896_RS24560	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
D0896_RS24585	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0896_RS24610	COG3264	Mechanosensitive ion channel
D0896_RS24610	COG1511	domain protein
D0896_RS24625	COG1053	succinate dehydrogenase
D0896_RS24630	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D0896_RS24650	COG2076	Multidrug Resistance protein
D0896_RS24655	COG5510	response to toxic substance
D0896_RS24670	COG1509	lysine 2,3-aminomutase activity
D0896_RS24675	COG0745	RESPONSE REGULATOR receiver
D0896_RS24710	COG3188	usher protein
D0896_RS24715	COG3539	Fimbrial protein
D0896_RS24740	COG0531	amino acid
D0896_RS24745	COG3030	protein affecting phage T7 exclusion by the F plasmid
D0896_RS24755	COG1027	Aspartate ammonia-lyase
D0896_RS24760	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D0896_RS24775	COG1309	transcriptional regulator
D0896_RS24815	COG0457	Tetratricopeptide repeat
D0896_RS24820	COG0726	polysaccharide deacetylase
D0896_RS24820	COG1649	PFAM Uncharacterised BCR, COG1649
D0896_RS24825	COG1215	transferase activity, transferring glycosyl groups
D0896_RS24845	COG0861	Integral membrane protein TerC family
D0896_RS24875	COG1486	melibiose metabolic process
D0896_RS24885	COG2169	Transcriptional regulator
D0896_RS24900	COG2824	Alkylphosphonate utilization operon protein PhnA
D0896_RS24905	COG2764	glyoxalase bleomycin resistance protein dioxygenase
D0896_RS24910	COG2188	Transcriptional regulator
D0896_RS24915	COG3624	Phosphonate C-P lyase system protein PhnG
D0896_RS24920	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
D0896_RS24925	COG3626	phosphonate metabolism
D0896_RS24930	COG3627	carbon phosphorus lyase activity
D0896_RS24935	COG4107	phosphonate C-P lyase system protein PhnK
D0896_RS24940	COG4778	phosphonate C-P lyase system protein PhnL
D0896_RS24945	COG3454	Phosphonate metabolism
D0896_RS24955	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
D0896_RS24965	COG0784	Response regulator, receiver
D0896_RS24965	COG4191	Histidine kinase
D0896_RS24970	COG1129	ABC transporter
D0896_RS24975	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS25010	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
D0896_RS25015	COG1301	dicarboxylic acid transport
D0896_RS25025	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D0896_RS25035	COG3162	membrane
D0896_RS25065	COG3539	Fimbrial protein
D0896_RS25070	COG1346	cytolysis
D0896_RS25075	COG1380	Effector of murein hydrolase LrgA
D0896_RS25080	COG0583	DNA-binding transcription factor activity
D0896_RS25085	COG0025	NhaP-type Na H and K H
D0896_RS25090	COG2252	PERMEase
D0896_RS25095	COG0625	glutathione transferase activity
D0896_RS25100	COG0789	Transcriptional regulator
D0896_RS25110	COG4943	cyclic-guanylate-specific phosphodiesterase activity
D0896_RS25145	COG1234	tRNA 3'-trailer cleavage
D0896_RS25150	COG1609	Transcriptional regulator
D0896_RS25155	COG0483	inositol monophosphate 1-phosphatase activity
D0896_RS25170	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0896_RS25190	COG4771	TonB-dependent receptor
D0896_RS25195	COG0741	lytic transglycosylase activity
D0896_RS25215	COG2315	Protein conserved in bacteria
D0896_RS25220	COG0432	Pfam Uncharacterised protein family UPF0047
D0896_RS25235	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D0896_RS25240	COG0305	Participates in initiation and elongation during chromosome replication
D0896_RS25255	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D0896_RS25265	COG0735	belongs to the Fur family
D0896_RS25270	COG3237	CsbD-like
D0896_RS25275	COG0534	Mate efflux family protein
D0896_RS25285	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
D0896_RS25360	COG0251	oxidation-reduction process
D0896_RS25370	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
D0896_RS25390	COG0527	aspartate kinase activity
D0896_RS25445	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
D0896_RS25475	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
D0896_RS25485	COG0456	acetyltransferase
D0896_RS25530	COG0151	Belongs to the GarS family
D0896_RS25540	COG4191	Histidine kinase
D0896_RS25545	COG3678	ATP-independent chaperone mediated protein folding
D0896_RS25580	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
D0896_RS25595	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D0896_RS25600	COG2104	thiamine diphosphate biosynthetic process
D0896_RS25620	COG3706	GGDEF domain
D0896_RS25630	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0896_RS25635	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D0896_RS25675	COG0250	Participates in transcription elongation, termination and antitermination
D0896_RS25755	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
D0896_RS25765	COG1739	Uncharacterized protein family UPF0029
D0896_RS25810	COG0805	protein transport
D0896_RS25830	COG3165	ubiquinone biosynthetic process from chorismate
D0896_RS25860	COG0583	DNA-binding transcription factor activity
D0896_RS25865	COG0697	spore germination
D0896_RS25870	COG0561	phosphatase activity
D0896_RS25875	COG2267	carboxylic ester hydrolase activity
D0896_RS25880	COG1280	lysine exporter protein (LysE YggA)
D0896_RS25890	COG1280	lysine exporter protein (LysE YggA)
D0896_RS25925	COG0210	DNA helicase
D0896_RS25930	COG1011	Hydrolase
D0896_RS25960	COG3072	Adenylate cyclase
D0896_RS25975	COG2959	enzyme of heme biosynthesis
D0896_RS25980	COG3071	HemY protein
D0896_RS26025	COG2244	polysaccharide biosynthetic process
D0896_RS26030	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D0896_RS26035	COG0456	acetyltransferase
D0896_RS26040	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
D0896_RS26045	COG1088	dTDP-glucose 4,6-dehydratase activity
D0896_RS26050	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
D0896_RS26055	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
D0896_RS26065	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
D0896_RS26070	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
D0896_RS26080	COG3118	belongs to the thioredoxin family
D0896_RS26110	COG1811	Na channel or pump
D0896_RS26120	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0896_RS26125	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0896_RS26135	COG0583	DNA-binding transcription factor activity
D0896_RS26140	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D0896_RS26155	COG3978	acetolactate synthase activity
D0896_RS26175	COG3085	chromosome segregation
D0896_RS26250	COG0583	DNA-binding transcription factor activity
D0896_RS26275	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
D0896_RS26290	COG3443	Belongs to the bacterial solute-binding protein 9 family
D0896_RS26295	COG2207	Transcriptional regulator
D0896_RS26305	COG0371	Dehydrogenase
D0896_RS26310	COG0697	spore germination
D0896_RS26320	COG0583	DNA-binding transcription factor activity
D0896_RS26330	COG0737	Belongs to the 5'-nucleotidase family
D0896_RS26340	COG0460	homoserine dehydrogenase
D0896_RS26340	COG0527	aspartate kinase activity
D0896_RS26345	COG0626	cystathionine gamma-synthase activity
D0896_RS26360	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D0896_RS26365	COG1609	Transcriptional regulator
D0896_RS26370	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D0896_RS26385	COG1575	Belongs to the MenA family. Type 1 subfamily
D0896_RS26405	COG3678	ATP-independent chaperone mediated protein folding
D0896_RS26410	COG0745	RESPONSE REGULATOR receiver
D0896_RS26415	COG2205	protein histidine kinase activity
D0896_RS26420	COG2258	MOSC domain
D0896_RS26425	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D0896_RS26470	COG1129	ABC transporter
D0896_RS26475	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS26480	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS26485	COG1454	alcohol dehydrogenase
D0896_RS26495	COG2211	Major facilitator Superfamily
D0896_RS26540	COG0243	molybdopterin cofactor binding
D0896_RS26540	COG3383	formate dehydrogenase (NAD+) activity
D0896_RS26545	COG3383	formate dehydrogenase (NAD+) activity
D0896_RS26545	COG0243	molybdopterin cofactor binding
D0896_RS26550	COG0437	4 iron, 4 sulfur cluster binding
D0896_RS26555	COG2864	formate dehydrogenase
D0896_RS26570	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
D0896_RS26580	COG0456	acetyltransferase
D0896_RS26595	COG1011	Hydrolase
D0896_RS26615	COG3852	Histidine kinase
D0896_RS26625	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D0896_RS26655	COG0204	Acyl-transferase
D0896_RS26665	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D0896_RS26670	COG3084	Protein conserved in bacteria
D0896_RS26680	COG1763	Mo-molybdopterin cofactor biosynthetic process
D0896_RS26715	COG2186	Transcriptional regulator
D0896_RS26720	COG0477	Major facilitator Superfamily
D0896_RS26725	COG1609	Transcriptional regulator
D0896_RS26730	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0896_RS26740	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0896_RS26745	COG1129	ABC transporter
D0896_RS26775	COG1522	sequence-specific DNA binding
D0896_RS26780	COG0716	FMN binding
D0896_RS26795	COG3312	ion transport
D0896_RS26845	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D0896_RS26850	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
D0896_RS26855	COG0573	inorganic phosphate transmembrane transporter activity
D0896_RS26860	COG0581	inorganic phosphate transmembrane transporter activity
D0896_RS26865	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D0896_RS26870	COG0704	Plays a role in the regulation of phosphate uptake
D0896_RS26885	COG2382	esterase
D0896_RS26890	COG0363	glucosamine-6-phosphate deaminase activity
D0896_RS26895	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0896_RS26905	COG2252	PERMEase
D0896_RS26910	COG0431	NADPH-dependent FMN reductase
D0896_RS26915	COG2091	lysine biosynthetic process via aminoadipic acid
D0896_RS26950	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
D0896_RS27000	COG3547	Transposase (IS116 IS110 IS902 family)
D0896_RS27015	COG2200	EAL domain
D0896_RS27035	COG1012	belongs to the aldehyde dehydrogenase family
D0896_RS27040	COG1846	Transcriptional regulator
D0896_RS27045	COG0657	acetylesterase activity
D0896_RS27070	COG0300	oxidoreductase activity
D0896_RS27075	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
D0896_RS27105	COG4372	Transposase
D0896_RS27110	COG3436	PFAM IS66 Orf2 family protein
D0896_RS27125	COG4680	protein conserved in bacteria
D0896_RS27130	COG5499	transcription regulator containing HTH domain
D0896_RS27175	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0896_RS27205	COG0739	heme binding
D0896_RS27215	COG2132	Multicopper oxidase
D0896_RS27220	COG3667	copper resistance
D0896_RS27225	COG2372	response to copper ion
D0896_RS27230	COG1276	copper resistance
D0896_RS27235	COG0745	RESPONSE REGULATOR receiver
D0896_RS27240	COG2205	protein histidine kinase activity
D0896_RS27250	COG3039	Transposase
D0896_RS27260	COG1942	4-Oxalocrotonate Tautomerase
D0896_RS27270	COG4948	Mandelate Racemase Muconate Lactonizing
D0896_RS27275	COG4172	Belongs to the ABC transporter superfamily
D0896_RS27300	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS27315	COG0583	DNA-binding transcription factor activity
D0896_RS27375	COG3436	PFAM IS66 Orf2 family protein
D0896_RS27380	COG1120	ATPase activity
D0896_RS27385	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS27390	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0896_RS27395	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
D0896_RS27400	COG4772	TonB-dependent receptor
D0896_RS27405	COG3712	iron ion homeostasis
D0896_RS27410	COG1595	DNA-templated transcription, initiation
D0896_RS27440	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS27445	COG0601	transmembrane transport
D0896_RS27460	COG4172	Belongs to the ABC transporter superfamily
D0896_RS27465	COG2433	Pfam Transposase IS66
D0896_RS27470	COG3436	PFAM IS66 Orf2 family protein
D0896_RS27490	COG4172	Belongs to the ABC transporter superfamily
D0896_RS27500	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0896_RS27510	COG0747	negative chemotaxis
D0896_RS27555	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0896_RS27615	COG2801	Transposase and inactivated derivatives
D0896_RS27625	COG2801	Transposase and inactivated derivatives
D0896_RS27655	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
D0896_RS27665	COG3318	Belongs to the UPF0149 family
D0896_RS27665	COG3012	SEC-C Motif Domain Protein
D0896_RS27765	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D0896_RS27795	COG2986	histidine ammonia-lyase
D0896_RS27805	COG2188	Transcriptional regulator
D0896_RS27810	COG0402	S-adenosylhomocysteine deaminase activity
D0896_RS27840	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D0896_RS27885	COG0583	DNA-binding transcription factor activity
D0896_RS27890	COG1028	Short-chain dehydrogenase reductase Sdr
D0896_RS27900	COG0531	amino acid
D0896_RS27905	COG0174	glutamine synthetase
D0896_RS27930	COG5654	RES domain protein
D0896_RS27935	COG5642	Protein of unknown function (DUF2384)
D0896_RS28010	COG0735	belongs to the Fur family
D0896_RS28015	COG2186	Transcriptional regulator
D0896_RS28045	COG2234	aminopeptidase activity
D0896_RS28060	COG3188	usher protein
D0896_RS28150	COG3436	PFAM IS66 Orf2 family protein