locus-tag	class	description
JYA99_RS00020	COG0187	DNA topoisomerase II activity
JYA99_RS00025	COG0561	phosphatase activity
JYA99_RS00040	COG2186	Transcriptional regulator
JYA99_RS00045	COG3734	2-keto-3-deoxy-galactonokinase
JYA99_RS00050	COG0800	Aldolase
JYA99_RS00060	COG2271	Major facilitator Superfamily
JYA99_RS00065	COG0823	Involved in the tonB-independent uptake of proteins
JYA99_RS00070	COG5645	(Lipo)protein
JYA99_RS00085	COG3645	SOS response
JYA99_RS00095	COG2188	Transcriptional regulator
JYA99_RS00110	COG2149	membrane
JYA99_RS00130	COG2610	gluconate transmembrane transporter activity
JYA99_RS00140	COG0583	DNA-binding transcription factor activity
JYA99_RS00145	COG2814	Major facilitator Superfamily
JYA99_RS00175	COG0028	Belongs to the TPP enzyme family
JYA99_RS00180	COG0440	acetolactate synthase activity
JYA99_RS00185	COG2197	response regulator
JYA99_RS00195	COG2271	Major facilitator Superfamily
JYA99_RS00235	COG2188	Transcriptional regulator
JYA99_RS00260	COG4580	involved in the transport of maltose and maltodextrins
JYA99_RS00265	COG1447	Phosphotransferase system cellobiose-specific component IIA
JYA99_RS00270	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS00270	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS00280	COG1609	Transcriptional regulator
JYA99_RS00290	COG3384	dioxygenase
JYA99_RS00295	COG0583	DNA-binding transcription factor activity
JYA99_RS00300	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JYA99_RS00305	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JYA99_RS00310	COG2828	Protein conserved in bacteria
JYA99_RS00325	COG0697	spore germination
JYA99_RS00330	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYA99_RS00330	COG1263	PTS System
JYA99_RS00340	COG2814	Major facilitator Superfamily
JYA99_RS00350	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYA99_RS00385	COG0583	DNA-binding transcription factor activity
JYA99_RS00410	COG1464	Belongs to the NlpA lipoprotein family
JYA99_RS00425	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JYA99_RS00435	COG1064	alcohol dehydrogenase
JYA99_RS00465	COG2211	Major facilitator Superfamily
JYA99_RS00470	COG1501	Belongs to the glycosyl hydrolase 31 family
JYA99_RS00480	COG1486	melibiose metabolic process
JYA99_RS00485	COG1263	PTS System
JYA99_RS00485	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYA99_RS00490	COG2982	Protein involved in outer membrane biogenesis
JYA99_RS00495	COG2233	PERMEase
JYA99_RS00500	COG0786	glutamate:sodium symporter activity
JYA99_RS00520	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JYA99_RS00545	COG3152	Membrane
JYA99_RS00555	COG1494	fructose-1,6-bisphosphatase
JYA99_RS00560	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JYA99_RS00565	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JYA99_RS00570	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JYA99_RS00590	COG2860	membrane
JYA99_RS00600	COG2169	Transcriptional regulator
JYA99_RS00600	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JYA99_RS00605	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JYA99_RS00610	COG1561	YicC-like family, N-terminal region
JYA99_RS00630	COG1131	(ABC) transporter
JYA99_RS00635	COG0842	Transport permease protein
JYA99_RS00665	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JYA99_RS00700	COG1519	Transferase
JYA99_RS00705	COG1216	Glycosyl transferase, family 2
JYA99_RS00710	COG0438	transferase activity, transferring glycosyl groups
JYA99_RS00720	COG0859	PFAM glycosyl transferase family 9
JYA99_RS00745	COG0859	PFAM glycosyl transferase family 9
JYA99_RS00760	COG0156	8-amino-7-oxononanoate synthase activity
JYA99_RS00770	COG0463	Glycosyl transferase, family 2
JYA99_RS00775	COG2861	carbohydrate metabolic process
JYA99_RS00780	COG4942	peptidase
JYA99_RS00790	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JYA99_RS00795	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JYA99_RS00815	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JYA99_RS00825	COG2186	Transcriptional regulator
JYA99_RS00845	COG3722	fumarate hydratase activity
JYA99_RS00860	COG0625	glutathione transferase activity
JYA99_RS00870	COG3276	selenocysteine insertion sequence binding
JYA99_RS00875	COG1414	Transcriptional regulator
JYA99_RS00880	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JYA99_RS00885	COG3977	Valine--pyruvate aminotransferase
JYA99_RS00890	COG0366	Alpha amylase catalytic
JYA99_RS00895	COG2992	FlgJ-related protein
JYA99_RS00900	COG1609	Transcriptional regulator
JYA99_RS00900	COG2207	Transcriptional regulator
JYA99_RS00905	COG4214	carbohydrate transport
JYA99_RS00915	COG4213	ABC transporter substrate-binding protein
JYA99_RS00930	COG4682	membrane
JYA99_RS00935	COG4682	membrane
JYA99_RS00940	COG3274	enterobacterial common antigen metabolic process
JYA99_RS00990	COG1278	Cold shock
JYA99_RS00995	COG2944	sequence-specific DNA binding
JYA99_RS01000	COG2814	Major facilitator Superfamily
JYA99_RS01020	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JYA99_RS01030	COG1609	Transcriptional regulator
JYA99_RS01035	COG2885	chlorophyll binding
JYA99_RS01040	COG0243	molybdopterin cofactor binding
JYA99_RS01045	COG0456	acetyltransferase
JYA99_RS01050	COG2818	Glycosylase
JYA99_RS01055	COG5571	outer membrane autotransporter
JYA99_RS01060	COG2223	nitrite transmembrane transporter activity
JYA99_RS01090	COG0747	negative chemotaxis
JYA99_RS01095	COG0601	transmembrane transport
JYA99_RS01100	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYA99_RS01105	COG0444	Belongs to the ABC transporter superfamily
JYA99_RS01110	COG4608	Belongs to the ABC transporter superfamily
JYA99_RS01125	COG2894	cell division
JYA99_RS01135	COG1215	transferase activity, transferring glycosyl groups
JYA99_RS01140	COG0457	Tetratricopeptide repeat
JYA99_RS01155	COG2194	sulfuric ester hydrolase activity
JYA99_RS01185	COG1215	transferase activity, transferring glycosyl groups
JYA99_RS01190	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JYA99_RS01195	COG0457	Tetratricopeptide repeat
JYA99_RS01195	COG3118	belongs to the thioredoxin family
JYA99_RS01200	COG2199	diguanylate cyclase activity
JYA99_RS01200	COG2200	EAL domain
JYA99_RS01210	COG0612	Peptidase, M16
JYA99_RS01220	COG2982	Protein involved in outer membrane biogenesis
JYA99_RS01225	COG0477	Major facilitator Superfamily
JYA99_RS01230	COG1295	ribonuclease BN
JYA99_RS01235	COG0583	DNA-binding transcription factor activity
JYA99_RS01240	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS01245	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JYA99_RS01255	COG1454	alcohol dehydrogenase
JYA99_RS01265	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JYA99_RS01270	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JYA99_RS01275	COG0671	phosphoesterase, PA-phosphatase related
JYA99_RS01295	COG0589	response to stress
JYA99_RS01305	COG0306	phosphate transporter
JYA99_RS01310	COG2081	HI0933 family
JYA99_RS01315	COG2239	Acts as a magnesium transporter
JYA99_RS01325	COG1124	(ABC) transporter
JYA99_RS01335	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYA99_RS01340	COG0601	transmembrane transport
JYA99_RS01345	COG0747	negative chemotaxis
JYA99_RS01355	COG3479	Phenolic acid decarboxylase
JYA99_RS01395	COG0628	permease
JYA99_RS01400	COG0477	Major facilitator Superfamily
JYA99_RS01410	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JYA99_RS01425	COG3714	YhhN family
JYA99_RS01435	COG3776	membrane
JYA99_RS01440	COG0742	ribosomal rna small subunit methyltransferase
JYA99_RS01445	COG0552	protein localization to endoplasmic reticulum
JYA99_RS01450	COG2884	Cell division ATP-binding protein ftsE
JYA99_RS01455	COG2177	Part of the ABC transporter FtsEX involved in
JYA99_RS01470	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JYA99_RS01480	COG0683	leucine binding
JYA99_RS01490	COG0683	leucine binding
JYA99_RS01495	COG0559	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS01545	COG0584	glycerophosphoryl diester phosphodiesterase
JYA99_RS01555	COG0405	Gamma-glutamyltransferase
JYA99_RS01560	COG1247	-acetyltransferase
JYA99_RS01570	COG0673	inositol 2-dehydrogenase activity
JYA99_RS01575	COG1741	Belongs to the pirin family
JYA99_RS01580	COG1609	Transcriptional regulator
JYA99_RS01585	COG3265	gluconokinase activity
JYA99_RS01590	COG2610	gluconate transmembrane transporter activity
JYA99_RS01600	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JYA99_RS01625	COG0058	SHG alpha-glucan phosphorylase activity
JYA99_RS01640	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JYA99_RS01655	COG1349	DNA-binding transcription factor activity
JYA99_RS01665	COG0058	SHG alpha-glucan phosphorylase activity
JYA99_RS01670	COG1640	4-alpha-glucanotransferase
JYA99_RS01675	COG2610	gluconate transmembrane transporter activity
JYA99_RS01685	COG1040	competence protein
JYA99_RS01710	COG1918	ferrous iron import across plasma membrane
JYA99_RS01715	COG2183	response to ionizing radiation
JYA99_RS01720	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JYA99_RS01745	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JYA99_RS01750	COG1011	Hydrolase
JYA99_RS01760	COG0494	nUDIX hydrolase
JYA99_RS01765	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JYA99_RS01790	COG4796	Type ii and iii secretion system protein
JYA99_RS01805	COG3266	domain, Protein
JYA99_RS01810	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JYA99_RS01815	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JYA99_RS01840	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JYA99_RS01845	COG0402	S-adenosylhomocysteine deaminase activity
JYA99_RS01850	COG0738	Major facilitator superfamily
JYA99_RS01875	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JYA99_RS01880	COG1289	transmembrane transporter activity
JYA99_RS01890	COG1765	OsmC-like protein
JYA99_RS01895	COG3954	Phosphoribulokinase
JYA99_RS01905	COG0429	hydrolase of the alpha beta-hydrolase fold
JYA99_RS01910	COG0488	(ABC) transporter
JYA99_RS01925	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
JYA99_RS01930	COG1047	Peptidyl-prolyl cis-trans
JYA99_RS01940	COG0545	Peptidyl-prolyl cis-trans isomerase
JYA99_RS01945	COG2964	Protein conserved in bacteria
JYA99_RS02000	COG0051	transcription antitermination factor activity, RNA binding
JYA99_RS02025	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JYA99_RS02040	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JYA99_RS02105	COG0201	protein transport
JYA99_RS02130	COG0202	RNA polymerase activity
JYA99_RS02145	COG0789	Transcriptional regulator
JYA99_RS02150	COG3036	rescue of stalled ribosome
JYA99_RS02180	COG0758	DNA mediated transformation
JYA99_RS02190	COG0551	DNA topoisomerase type I activity
JYA99_RS02210	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JYA99_RS02250	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYA99_RS02255	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS02260	COG1309	transcriptional regulator
JYA99_RS02280	COG4145	pantothenate transmembrane transporter activity
JYA99_RS02285	COG3924	membrane
JYA99_RS02290	COG0439	Biotin carboxylase
JYA99_RS02295	COG0511	ligase activity, forming carbon-carbon bonds
JYA99_RS02320	COG2200	EAL domain
JYA99_RS02320	COG2199	diguanylate cyclase activity
JYA99_RS02325	COG1077	Cell shape determining protein MreB Mrl
JYA99_RS02330	COG1792	Involved in formation and maintenance of cell shape
JYA99_RS02335	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JYA99_RS02345	COG1530	ribonuclease E activity
JYA99_RS02350	COG3164	Protein of unknown function
JYA99_RS02355	COG0312	modulator of DNA gyrase
JYA99_RS02360	COG0583	DNA-binding transcription factor activity
JYA99_RS02375	COG1289	transmembrane transporter activity
JYA99_RS02380	COG2732	(Barnase) inhibitor
JYA99_RS02405	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JYA99_RS02410	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JYA99_RS02415	COG3105	Protein conserved in bacteria
JYA99_RS02420	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JYA99_RS02440	COG0625	glutathione transferase activity
JYA99_RS02445	COG2969	positive regulation of protein catabolic process
JYA99_RS02455	COG0493	'glutamate synthase
JYA99_RS02460	COG0067	glutamate synthase
JYA99_RS02460	COG0069	glutamate synthase activity
JYA99_RS02460	COG0070	glutamate synthase
JYA99_RS02465	COG1242	4 iron, 4 sulfur cluster binding
JYA99_RS02470	COG2271	Major facilitator Superfamily
JYA99_RS02475	COG1063	alcohol dehydrogenase
JYA99_RS02480	COG1312	Catalyzes the dehydration of D-mannonate
JYA99_RS02485	COG0784	Response regulator, receiver
JYA99_RS02485	COG5002	protein histidine kinase activity
JYA99_RS02485	COG2198	Histidine kinase
JYA99_RS02490	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JYA99_RS02495	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JYA99_RS02500	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS02510	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS02515	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JYA99_RS02520	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JYA99_RS02525	COG1137	ATPase activity
JYA99_RS02530	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JYA99_RS02535	COG3117	lipopolysaccharide transmembrane transporter activity
JYA99_RS02540	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JYA99_RS02550	COG0530	calcium, potassium:sodium antiporter activity
JYA99_RS02555	COG1127	ABC transporter
JYA99_RS02560	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JYA99_RS02565	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JYA99_RS02570	COG2854	intermembrane phospholipid transfer
JYA99_RS02575	COG3113	response to antibiotic
JYA99_RS02580	COG5007	Belongs to the BolA IbaG family
JYA99_RS02590	COG3423	Transcriptional regulator
JYA99_RS02595	COG0142	geranyltranstransferase activity
JYA99_RS02610	COG0697	spore germination
JYA99_RS02620	COG2027	D-alanyl-D-alanine carboxypeptidase
JYA99_RS02630	COG1534	Rna-binding protein
JYA99_RS02640	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JYA99_RS02645	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JYA99_RS02655	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JYA99_RS02695	COG0195	Participates in both transcription termination and antitermination
JYA99_RS02740	COG0814	amino acid
JYA99_RS02745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYA99_RS02750	COG0826	peptidase U32
JYA99_RS02755	COG0826	peptidase U32
JYA99_RS02760	COG3154	lipid carrier protein
JYA99_RS02765	COG3153	acetyltransferase
JYA99_RS02780	COG0693	protein deglycase activity
JYA99_RS02785	COG0702	epimerase
JYA99_RS02790	COG0701	Predicted permease
JYA99_RS02795	COG2823	Periplasmic or secreted lipoprotein
JYA99_RS02815	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JYA99_RS02820	COG2721	sulfolactate sulfo-lyase activity
JYA99_RS02825	COG2271	Major facilitator Superfamily
JYA99_RS02835	COG2084	Dehydrogenase
JYA99_RS02840	COG1929	Belongs to the glycerate kinase type-1 family
JYA99_RS02865	COG1741	Belongs to the pirin family
JYA99_RS02870	COG0583	DNA-binding transcription factor activity
JYA99_RS02875	COG3152	Membrane
JYA99_RS02880	COG0435	Glutathione S-transferase
JYA99_RS02885	COG2259	Doxx family
JYA99_RS02895	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
JYA99_RS02900	COG4575	ribosome binding
JYA99_RS02905	COG1422	Protein of unknown function (DUF1090)
JYA99_RS02915	COG0586	Pfam SNARE associated Golgi protein
JYA99_RS02920	COG2186	Transcriptional regulator
JYA99_RS02925	COG2271	Major facilitator Superfamily
JYA99_RS02935	COG2721	sulfolactate sulfo-lyase activity
JYA99_RS02950	COG0861	Integral membrane protein TerC family
JYA99_RS02955	COG0673	inositol 2-dehydrogenase activity
JYA99_RS02960	COG1451	nucleotide metabolic process
JYA99_RS02980	COG1902	pentaerythritol trinitrate reductase activity
JYA99_RS02980	COG0446	pyridine nucleotide-disulphide oxidoreductase
JYA99_RS03030	COG1695	Transcriptional regulator
JYA99_RS03035	COG2375	cellular response to nickel ion
JYA99_RS03050	COG1461	Dihydroxyacetone kinase
JYA99_RS03055	COG2376	Dihydroxyacetone kinase
JYA99_RS03125	COG3247	response to pH
JYA99_RS03135	COG2205	protein histidine kinase activity
JYA99_RS03135	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS03135	COG0784	Response regulator, receiver
JYA99_RS03135	COG2198	Histidine kinase
JYA99_RS03140	COG2197	response regulator
JYA99_RS03165	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JYA99_RS03170	COG0358	DNA primase activity
JYA99_RS03175	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JYA99_RS03240	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JYA99_RS03255	COG4991	sh3 domain protein
JYA99_RS03260	COG3025	triphosphatase activity
JYA99_RS03285	COG2960	long-chain fatty acid transporting porin activity
JYA99_RS03300	COG3384	dioxygenase
JYA99_RS03305	COG0754	glutathionylspermidine amidase activity
JYA99_RS03320	COG0494	nUDIX hydrolase
JYA99_RS03325	COG3151	Protein conserved in bacteria
JYA99_RS03330	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JYA99_RS03335	COG3150	esterase
JYA99_RS03345	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JYA99_RS03350	COG2249	NAD(P)H dehydrogenase (quinone) activity
JYA99_RS03355	COG0642	Histidine kinase
JYA99_RS03365	COG3111	PFAM Bacterial OB fold (BOF) protein
JYA99_RS03370	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
JYA99_RS03375	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JYA99_RS03380	COG0204	Acyl-transferase
JYA99_RS03385	COG2132	Multicopper oxidase
JYA99_RS03390	COG1032	radical SAM domain protein
JYA99_RS03400	COG0656	L-ascorbic acid biosynthetic process
JYA99_RS03405	COG1979	alcohol dehydrogenase
JYA99_RS03410	COG2207	Transcriptional regulator
JYA99_RS03415	COG0586	Pfam SNARE associated Golgi protein
JYA99_RS03420	COG0626	cystathionine gamma-synthase activity
JYA99_RS03430	COG0848	biopolymer transport protein
JYA99_RS03435	COG2211	Major facilitator Superfamily
JYA99_RS03460	COG0625	glutathione transferase activity
JYA99_RS03475	COG0754	glutathionylspermidine amidase activity
JYA99_RS03480	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYA99_RS03500	COG0583	DNA-binding transcription factor activity
JYA99_RS03505	COG0626	cystathionine gamma-synthase activity
JYA99_RS03535	COG1811	Na channel or pump
JYA99_RS03540	COG1982	Orn Lys Arg decarboxylase major
JYA99_RS03545	COG2211	Major facilitator Superfamily
JYA99_RS03560	COG1194	a g-specific adenine glycosylase
JYA99_RS03570	COG3171	Protein conserved in bacteria
JYA99_RS03585	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JYA99_RS03585	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JYA99_RS03595	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JYA99_RS03610	COG0762	integral membrane protein
JYA99_RS03615	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JYA99_RS03620	COG2805	Type II/IV secretion system protein
JYA99_RS03640	COG0189	ligase activity
JYA99_RS03645	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JYA99_RS03650	COG2356	endonuclease I
JYA99_RS03660	COG2814	Major facilitator Superfamily
JYA99_RS03695	COG0501	Belongs to the peptidase M48B family
JYA99_RS03700	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JYA99_RS03715	COG0191	fructose-bisphosphate aldolase activity
JYA99_RS03720	COG0668	transmembrane transport
JYA99_RS03730	COG2968	Membrane
JYA99_RS03745	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JYA99_RS03750	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JYA99_RS03770	COG0006	proline dipeptidase activity
JYA99_RS03775	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JYA99_RS03780	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JYA99_RS03800	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS03810	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JYA99_RS03830	COG2723	6-phospho-beta-galactosidase activity
JYA99_RS03835	COG1737	Transcriptional regulator
JYA99_RS03845	COG1272	protein, Hemolysin III
JYA99_RS03855	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
JYA99_RS03865	COG0716	FMN binding
JYA99_RS03870	COG4974	Belongs to the 'phage' integrase family
JYA99_RS03880	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JYA99_RS03900	COG4942	peptidase
JYA99_RS03910	COG4974	Belongs to the 'phage' integrase family
JYA99_RS03935	COG2814	Major facilitator Superfamily
JYA99_RS03950	COG0667	Aldo Keto reductase
JYA99_RS03990	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JYA99_RS03995	COG1393	Belongs to the ArsC family
JYA99_RS04010	COG1538	Outer membrane efflux protein
JYA99_RS04015	COG1289	transmembrane transporter activity
JYA99_RS04030	COG3592	Divergent 4Fe-4S mono-cluster
JYA99_RS04035	COG2388	GCN5-related N-acetyl-transferase
JYA99_RS04045	COG3539	Fimbrial protein
JYA99_RS04050	COG3539	Fimbrial protein
JYA99_RS04055	COG3539	Fimbrial protein
JYA99_RS04060	COG3188	usher protein
JYA99_RS04065	COG3121	Chaperone
JYA99_RS04070	COG3539	Fimbrial protein
JYA99_RS04080	COG4974	Belongs to the 'phage' integrase family
JYA99_RS04085	COG0582	viral genome integration into host DNA
JYA99_RS04090	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
JYA99_RS04095	COG1846	Transcriptional regulator
JYA99_RS04100	COG0697	spore germination
JYA99_RS04150	COG0667	Aldo Keto reductase
JYA99_RS04155	COG0814	amino acid
JYA99_RS04170	COG0183	Belongs to the thiolase family
JYA99_RS04180	COG0823	Involved in the tonB-independent uptake of proteins
JYA99_RS04185	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS04190	COG2814	Major facilitator Superfamily
JYA99_RS04225	COG3842	ATPase activity
JYA99_RS04230	COG0395	ABC-type sugar transport system, permease component
JYA99_RS04235	COG1175	transmembrane transport
JYA99_RS04240	COG1917	Cupin 2, conserved barrel domain protein
JYA99_RS04245	COG1794	racemase activity, acting on amino acids and derivatives
JYA99_RS04250	COG0583	DNA-binding transcription factor activity
JYA99_RS04260	COG1609	Transcriptional regulator
JYA99_RS04265	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS04270	COG2723	6-phospho-beta-galactosidase activity
JYA99_RS04275	COG2186	Transcriptional regulator
JYA99_RS04285	COG1609	Transcriptional regulator
JYA99_RS04305	COG0667	Aldo Keto reductase
JYA99_RS04315	COG0861	Integral membrane protein TerC family
JYA99_RS04350	COG2165	general secretion pathway protein
JYA99_RS04355	COG4795	General secretion pathway protein
JYA99_RS04365	COG4967	type IV pilus modification protein PilV
JYA99_RS04370	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
JYA99_RS04375	COG1025	Belongs to the peptidase M16 family
JYA99_RS04380	COG1074	ATP-dependent DNA helicase activity
JYA99_RS04385	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JYA99_RS04395	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JYA99_RS04395	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JYA99_RS04400	COG0860	N-Acetylmuramoyl-L-alanine amidase
JYA99_RS04405	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JYA99_RS04435	COG4656	Part of a membrane complex involved in electron transport
JYA99_RS04440	COG1454	alcohol dehydrogenase
JYA99_RS04440	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS04470	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
JYA99_RS04695	COG2885	chlorophyll binding
JYA99_RS04730	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JYA99_RS04735	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JYA99_RS04740	COG2166	iron-sulfur cluster assembly
JYA99_RS04745	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JYA99_RS04755	COG0583	DNA-binding transcription factor activity
JYA99_RS04760	COG2363	Small membrane protein
JYA99_RS04770	COG1349	DNA-binding transcription factor activity
JYA99_RS04795	COG0235	Class ii aldolase
JYA99_RS04800	COG1454	alcohol dehydrogenase
JYA99_RS04820	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYA99_RS04835	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JYA99_RS04840	COG2011	ABC-type metal ion transport system permease component
JYA99_RS04845	COG1464	Belongs to the NlpA lipoprotein family
JYA99_RS04850	COG0477	Major facilitator Superfamily
JYA99_RS04860	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JYA99_RS04865	COG1760	l-serine dehydratase
JYA99_RS04870	COG0814	amino acid
JYA99_RS04875	COG1611	Belongs to the LOG family
JYA99_RS04890	COG3098	single-species biofilm formation
JYA99_RS04895	COG0564	pseudouridine synthase activity
JYA99_RS04900	COG0716	FMN binding
JYA99_RS04905	COG2271	Major facilitator Superfamily
JYA99_RS04910	COG4948	Mandelate Racemase Muconate Lactonizing
JYA99_RS04915	COG4948	Mandelate Racemase Muconate Lactonizing
JYA99_RS04920	COG1929	Belongs to the glycerate kinase type-1 family
JYA99_RS04925	COG3437	response regulator, receiver
JYA99_RS04925	COG2205	protein histidine kinase activity
JYA99_RS04925	COG4999	Histidine kinase
JYA99_RS04925	COG3850	Histidine kinase
JYA99_RS04935	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JYA99_RS04940	COG3956	TIGRFAM MazG family protein
JYA99_RS04960	COG0602	queuosine metabolic process
JYA99_RS04965	COG0720	synthase
JYA99_RS04985	COG2234	aminopeptidase activity
JYA99_RS05045	COG4942	peptidase
JYA99_RS05045	COG1388	LysM domain
JYA99_RS05050	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JYA99_RS05075	COG0163	prenyltransferase activity
JYA99_RS05080	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JYA99_RS05120	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS05125	COG4558	Periplasmic binding protein
JYA99_RS05130	COG3720	iron ion transport
JYA99_RS05150	COG0679	Auxin Efflux Carrier
JYA99_RS05165	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JYA99_RS05170	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JYA99_RS05175	COG1121	(ABC) transporter
JYA99_RS05185	COG1609	Transcriptional regulator
JYA99_RS05190	COG1940	carbohydrate kinase activity
JYA99_RS05195	COG1447	Phosphotransferase system cellobiose-specific component IIA
JYA99_RS05200	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS05205	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS05210	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS05215	COG4580	involved in the transport of maltose and maltodextrins
JYA99_RS05225	COG2723	6-phospho-beta-galactosidase activity
JYA99_RS05235	COG0309	Hydrogenase expression formation protein (HypE)
JYA99_RS05240	COG0409	Hydrogenase expression formation protein
JYA99_RS05245	COG0298	carbon dioxide binding
JYA99_RS05250	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
JYA99_RS05265	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JYA99_RS05270	COG0651	ATP synthesis coupled electron transport
JYA99_RS05275	COG0650	Formate hydrogenlyase subunit 4
JYA99_RS05280	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
JYA99_RS05280	COG3261	NADH dehydrogenase
JYA99_RS05285	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JYA99_RS05290	COG3260	NADH ubiquinone oxidoreductase 20
JYA99_RS05300	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JYA99_RS05310	COG2723	6-phospho-beta-galactosidase activity
JYA99_RS05315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYA99_RS05315	COG1263	PTS System
JYA99_RS05320	COG1609	Transcriptional regulator
JYA99_RS05325	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JYA99_RS05330	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
JYA99_RS05335	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
JYA99_RS05360	COG1349	DNA-binding transcription factor activity
JYA99_RS05365	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS05370	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS05380	COG3732	PTS system glucitol sorbitol-specific
JYA99_RS05385	COG3730	PTS system glucitol sorbitol-specific
JYA99_RS05390	COG2951	lytic endotransglycosylase activity
JYA99_RS05395	COG1121	(ABC) transporter
JYA99_RS05400	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JYA99_RS05405	COG0803	Belongs to the bacterial solute-binding protein 9 family
JYA99_RS05410	COG1546	Belongs to the CinA family
JYA99_RS05430	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
JYA99_RS05465	COG2823	Periplasmic or secreted lipoprotein
JYA99_RS05470	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYA99_RS05475	COG1238	metal cluster binding
JYA99_RS05495	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JYA99_RS05500	COG2814	Major facilitator Superfamily
JYA99_RS05505	COG1566	PFAM secretion protein HlyD family protein
JYA99_RS05510	COG1846	Transcriptional regulator
JYA99_RS05520	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
JYA99_RS05530	COG4176	ABC-type proline glycine betaine transport system permease component
JYA99_RS05545	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JYA99_RS05555	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JYA99_RS05560	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JYA99_RS05565	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYA99_RS05570	COG4575	ribosome binding
JYA99_RS05585	COG2916	Histone family protein nucleoid-structuring protein H-NS
JYA99_RS05600	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JYA99_RS05605	COG0640	Transcriptional regulator
JYA99_RS05615	COG0583	DNA-binding transcription factor activity
JYA99_RS05620	COG3284	Transcriptional regulator
JYA99_RS05630	COG3539	Fimbrial protein
JYA99_RS05635	COG3121	Chaperone
JYA99_RS05665	COG3539	Fimbrial protein
JYA99_RS05670	COG2197	response regulator
JYA99_RS05685	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS05695	COG0235	Class ii aldolase
JYA99_RS05705	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS05740	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS05745	COG3708	Transcriptional regulator
JYA99_RS05745	COG2207	Transcriptional regulator
JYA99_RS05840	COG2867	negative regulation of translational initiation
JYA99_RS05855	COG0497	DNA recombination
JYA99_RS05870	COG4536	flavin adenine dinucleotide binding
JYA99_RS05875	COG4137	Cytochrome C assembly protein
JYA99_RS05880	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JYA99_RS05915	COG2885	chlorophyll binding
JYA99_RS05920	COG2199	diguanylate cyclase activity
JYA99_RS05930	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JYA99_RS05935	COG1605	Chorismate mutase
JYA99_RS05935	COG0287	Prephenate dehydrogenase
JYA99_RS05945	COG0077	Prephenate dehydratase
JYA99_RS05945	COG1605	Chorismate mutase
JYA99_RS05955	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JYA99_RS05960	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JYA99_RS05975	COG0542	response to heat
JYA99_RS06000	COG0477	Major facilitator Superfamily
JYA99_RS06005	COG5544	Lipoprotein
JYA99_RS06010	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JYA99_RS06020	COG3148	PFAM DTW domain containing protein
JYA99_RS06025	COG3118	belongs to the thioredoxin family
JYA99_RS06030	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JYA99_RS06045	COG0513	Belongs to the DEAD box helicase family
JYA99_RS06055	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JYA99_RS06070	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
JYA99_RS06075	COG3026	antisigma factor binding
JYA99_RS06080	COG3086	response to oxidative stress
JYA99_RS06090	COG0681	Belongs to the peptidase S26 family
JYA99_RS06110	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JYA99_RS06120	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JYA99_RS06125	COG1737	Transcriptional regulator
JYA99_RS06130	COG0560	Phosphoserine phosphatase
JYA99_RS06145	COG0047	phosphoribosylformylglycinamidine synthase activity
JYA99_RS06145	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JYA99_RS06150	COG2205	protein histidine kinase activity
JYA99_RS06155	COG3170	Tfp pilus assembly protein FimV
JYA99_RS06160	COG2204	response regulator
JYA99_RS06165	COG0347	Belongs to the P(II) protein family
JYA99_RS06170	COG1017	nitric oxide dioxygenase activity
JYA99_RS06170	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JYA99_RS06180	COG2259	Doxx family
JYA99_RS06185	COG1940	carbohydrate kinase activity
JYA99_RS06190	COG0457	Tetratricopeptide repeat
JYA99_RS06195	COG0477	Major facilitator Superfamily
JYA99_RS06195	COG2814	Major facilitator Superfamily
JYA99_RS06200	COG2017	converts alpha-aldose to the beta-anomer
JYA99_RS06205	COG2814	Major facilitator Superfamily
JYA99_RS06210	COG3711	transcriptional antiterminator
JYA99_RS06215	COG3683	transport system, periplasmic component
JYA99_RS06220	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
JYA99_RS06250	COG0822	iron-sulfur transferase activity
JYA99_RS06270	COG0633	Ferredoxin
JYA99_RS06275	COG2975	iron-sulfur cluster assembly
JYA99_RS06295	COG2897	thiosulfate sulfurtransferase activity
JYA99_RS06300	COG2373	Large extracellular alpha-helical protein
JYA99_RS06305	COG4953	penicillin-binding protein 1C
JYA99_RS06335	COG2976	Protein conserved in bacteria
JYA99_RS06365	COG1645	bacterial-type flagellum-dependent swarming motility
JYA99_RS06375	COG0517	IMP dehydrogenase activity
JYA99_RS06375	COG0516	GMP reductase activity
JYA99_RS06385	COG3119	arylsulfatase activity
JYA99_RS06390	COG0641	radical SAM
JYA99_RS06410	COG2200	EAL domain
JYA99_RS06425	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JYA99_RS06440	COG2723	6-phospho-beta-galactosidase activity
JYA99_RS06450	COG2233	PERMEase
JYA99_RS06465	COG1393	Belongs to the ArsC family
JYA99_RS06470	COG4783	chaperone-mediated protein folding
JYA99_RS06480	COG0628	permease
JYA99_RS06485	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JYA99_RS06490	COG2716	regulation of RNA biosynthetic process
JYA99_RS06500	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JYA99_RS06510	COG2321	neutral zinc metallopeptidase
JYA99_RS06515	COG1444	tRNA N-acetyltransferase activity
JYA99_RS06520	COG0400	carboxylic ester hydrolase activity
JYA99_RS06535	COG1393	Belongs to the ArsC family
JYA99_RS06545	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYA99_RS06550	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JYA99_RS06550	COG0493	'glutamate synthase
JYA99_RS06560	COG5342	invasion associated locus B
JYA99_RS06565	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JYA99_RS06570	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JYA99_RS06580	COG4810	utilization protein
JYA99_RS06660	COG2207	Transcriptional regulator
JYA99_RS06670	COG0860	N-Acetylmuramoyl-L-alanine amidase
JYA99_RS06690	COG2837	iron assimilation
JYA99_RS06700	COG4150	thiosulfate binding
JYA99_RS06705	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JYA99_RS06710	COG4208	sulfate ABC transporter
JYA99_RS06715	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JYA99_RS06725	COG4319	ketosteroid isomerase
JYA99_RS06760	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JYA99_RS06780	COG3530	Putative quorum-sensing-regulated virulence factor
JYA99_RS06785	COG0385	Bile acid
JYA99_RS06790	COG0583	DNA-binding transcription factor activity
JYA99_RS06825	COG3415	Transposase
JYA99_RS06830	COG3415	Transposase
JYA99_RS06845	COG2200	EAL domain
JYA99_RS06845	COG2199	diguanylate cyclase activity
JYA99_RS06850	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JYA99_RS06865	COG0667	Aldo Keto reductase
JYA99_RS06870	COG3961	Belongs to the TPP enzyme family
JYA99_RS06885	COG3279	Response regulator of the LytR AlgR family
JYA99_RS06890	COG3275	phosphorelay sensor kinase activity
JYA99_RS06905	COG0436	Aminotransferase
JYA99_RS06915	COG2807	transmembrane transport
JYA99_RS06920	COG0590	tRNA wobble adenosine to inosine editing
JYA99_RS06925	COG0583	DNA-binding transcription factor activity
JYA99_RS06960	COG2885	chlorophyll binding
JYA99_RS06990	COG5632	N-Acetylmuramoyl-L-alanine amidase
JYA99_RS06990	COG4193	domain, Protein
JYA99_RS06990	COG3266	domain, Protein
JYA99_RS07080	COG2116	formate transmembrane transporter activity
JYA99_RS07085	COG2853	Lipoprotein
JYA99_RS07095	COG3691	Protein conserved in bacteria
JYA99_RS07110	COG2062	phosphohistidine phosphatase, SixA
JYA99_RS07135	COG0730	response to heat
JYA99_RS07140	COG3101	peptidyl-lysine hydroxylation
JYA99_RS07155	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JYA99_RS07175	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JYA99_RS07185	COG0586	Pfam SNARE associated Golgi protein
JYA99_RS07195	COG0285	dihydrofolate synthase activity
JYA99_RS07200	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
JYA99_RS07205	COG1286	toxin biosynthetic process
JYA99_RS07210	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JYA99_RS07215	COG0163	prenyltransferase activity
JYA99_RS07240	COG4160	amino acid transport
JYA99_RS07245	COG4598	ABC transporter
JYA99_RS07260	COG1090	epimerase
JYA99_RS07265	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JYA99_RS07270	COG0625	glutathione transferase activity
JYA99_RS07280	COG0622	Phosphoesterase
JYA99_RS07285	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JYA99_RS07290	COG0280	phosphate acetyltransferase
JYA99_RS07290	COG0857	belongs to the CobB CobQ family
JYA99_RS07310	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYA99_RS07315	COG0490	domain, Protein
JYA99_RS07315	COG0471	metal ion transport
JYA99_RS07325	COG0436	Aminotransferase
JYA99_RS07330	COG0583	DNA-binding transcription factor activity
JYA99_RS07375	COG0839	Belongs to the complex I subunit 6 family
JYA99_RS07385	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JYA99_RS07390	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JYA99_RS07405	COG2153	protein acetylation
JYA99_RS07410	COG1169	isochorismate synthase
JYA99_RS07435	COG0318	PFAM AMP-dependent synthetase and ligase
JYA99_RS07445	COG5464	transposase or invertase
JYA99_RS07460	COG1414	Transcriptional regulator
JYA99_RS07470	COG2271	Major facilitator Superfamily
JYA99_RS07480	COG0247	lactate metabolic process
JYA99_RS07490	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JYA99_RS07495	COG2271	Major facilitator Superfamily
JYA99_RS07500	COG0584	glycerophosphoryl diester phosphodiesterase
JYA99_RS07505	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JYA99_RS07530	COG2205	protein histidine kinase activity
JYA99_RS07530	COG0784	Response regulator, receiver
JYA99_RS07540	COG0642	Histidine kinase
JYA99_RS07540	COG2198	Histidine kinase
JYA99_RS07555	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JYA99_RS07555	COG2169	Transcriptional regulator
JYA99_RS07560	COG3145	DNA-N1-methyladenine dioxygenase activity
JYA99_RS07565	COG4615	Cyclic peptide transporter
JYA99_RS07570	COG2239	Acts as a magnesium transporter
JYA99_RS07575	COG0659	secondary active sulfate transmembrane transporter activity
JYA99_RS07590	COG0628	permease
JYA99_RS07615	COG1349	DNA-binding transcription factor activity
JYA99_RS07620	COG0494	nUDIX hydrolase
JYA99_RS07640	COG1061	Type III restriction enzyme res subunit
JYA99_RS07645	COG1187	pseudouridine synthase activity
JYA99_RS07650	COG2814	Major facilitator Superfamily
JYA99_RS07660	COG4172	Belongs to the ABC transporter superfamily
JYA99_RS07665	COG4239	(ABC) transporter, permease
JYA99_RS07670	COG4174	ABC transporter (Permease)
JYA99_RS07675	COG4166	transmembrane transport
JYA99_RS07680	COG2200	EAL domain
JYA99_RS07685	COG0791	NLP P60 protein
JYA99_RS07690	COG0671	phosphoesterase, PA-phosphatase related
JYA99_RS07695	COG0523	cobalamin synthesis protein
JYA99_RS07700	COG0246	Mannitol dehydrogenase
JYA99_RS07705	COG1312	Catalyzes the dehydration of D-mannonate
JYA99_RS07725	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS07725	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS07730	COG1105	Belongs to the carbohydrate kinase PfkB family
JYA99_RS07735	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JYA99_RS07735	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JYA99_RS07735	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JYA99_RS07745	COG2855	membrane
JYA99_RS07750	COG0583	DNA-binding transcription factor activity
JYA99_RS07755	COG0833	amino acid
JYA99_RS07760	COG4771	TonB-dependent receptor
JYA99_RS07775	COG2311	Membrane
JYA99_RS07790	COG1129	ABC transporter
JYA99_RS07800	COG2949	membrane
JYA99_RS07810	COG1346	cytolysis
JYA99_RS07820	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JYA99_RS07825	COG3659	wide pore channel activity
JYA99_RS07840	COG2723	6-phospho-beta-galactosidase activity
JYA99_RS07845	COG1538	Outer membrane efflux protein
JYA99_RS07850	COG0586	Pfam SNARE associated Golgi protein
JYA99_RS07860	COG1686	Belongs to the peptidase S11 family
JYA99_RS07870	COG0277	FAD linked oxidase domain protein
JYA99_RS07875	COG1472	Belongs to the glycosyl hydrolase 3 family
JYA99_RS07880	COG1732	Glycine betaine
JYA99_RS07885	COG1174	glycine betaine transport
JYA99_RS07890	COG1125	glycine betaine transport
JYA99_RS07895	COG1174	glycine betaine transport
JYA99_RS07905	COG3275	phosphorelay sensor kinase activity
JYA99_RS07915	COG4807	Protein conserved in bacteria
JYA99_RS07935	COG5455	response to cobalt ion
JYA99_RS07940	COG0583	DNA-binding transcription factor activity
JYA99_RS07945	COG2252	PERMEase
JYA99_RS07955	COG0583	DNA-binding transcription factor activity
JYA99_RS07970	COG0351	phosphomethylpyrimidine kinase
JYA99_RS07975	COG1830	Aldolase
JYA99_RS07985	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JYA99_RS08010	COG1070	Carbohydrate kinase
JYA99_RS08020	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYA99_RS08025	COG4948	Mandelate Racemase Muconate Lactonizing
JYA99_RS08030	COG0747	negative chemotaxis
JYA99_RS08035	COG0601	transmembrane transport
JYA99_RS08040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYA99_RS08045	COG0444	Belongs to the ABC transporter superfamily
JYA99_RS08050	COG4608	Belongs to the ABC transporter superfamily
JYA99_RS08060	COG0826	peptidase U32
JYA99_RS08065	COG0745	RESPONSE REGULATOR receiver
JYA99_RS08070	COG2205	protein histidine kinase activity
JYA99_RS08095	COG1301	dicarboxylic acid transport
JYA99_RS08115	COG5002	protein histidine kinase activity
JYA99_RS08120	COG0443	Heat shock 70 kDa protein
JYA99_RS08125	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JYA99_RS08140	COG2982	Protein involved in outer membrane biogenesis
JYA99_RS08145	COG1253	flavin adenine dinucleotide binding
JYA99_RS08185	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JYA99_RS08190	COG2244	polysaccharide biosynthetic process
JYA99_RS08195	COG0438	transferase activity, transferring glycosyl groups
JYA99_RS08220	COG0438	transferase activity, transferring glycosyl groups
JYA99_RS08290	COG0438	transferase activity, transferring glycosyl groups
JYA99_RS08315	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JYA99_RS08345	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JYA99_RS08350	COG0583	DNA-binding transcription factor activity
JYA99_RS08360	COG0531	amino acid
JYA99_RS08365	COG0640	Transcriptional regulator
JYA99_RS08370	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JYA99_RS08375	COG2925	Exonuclease
JYA99_RS08390	COG1289	transmembrane transporter activity
JYA99_RS08410	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
JYA99_RS08420	COG1942	4-Oxalocrotonate Tautomerase
JYA99_RS08425	COG0583	DNA-binding transcription factor activity
JYA99_RS08430	COG0095	Lipoate-protein ligase
JYA99_RS08435	COG0477	Major facilitator Superfamily
JYA99_RS08445	COG5001	Diguanylate cyclase
JYA99_RS08445	COG3300	MHYT domain
JYA99_RS08455	COG3615	Tellurite resistance protein tehB
JYA99_RS08480	COG3706	GGDEF domain
JYA99_RS08500	COG2207	Transcriptional regulator
JYA99_RS08515	COG1566	PFAM secretion protein HlyD family protein
JYA99_RS08535	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS08540	COG2814	Major facilitator Superfamily
JYA99_RS08555	COG1737	Transcriptional regulator
JYA99_RS08570	COG0582	viral genome integration into host DNA
JYA99_RS08580	COG0534	Mate efflux family protein
JYA99_RS08590	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JYA99_RS08610	COG0604	alcohol dehydrogenase
JYA99_RS08615	COG1309	transcriptional regulator
JYA99_RS08620	COG0025	NhaP-type Na H and K H
JYA99_RS08670	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JYA99_RS08680	COG1418	mRNA catabolic process
JYA99_RS08685	COG0270	DNA (cytosine-5-)-methyltransferase activity
JYA99_RS08690	COG3727	T/G mismatch-specific endonuclease activity
JYA99_RS08695	COG0697	spore germination
JYA99_RS08700	COG2354	Protein conserved in bacteria
JYA99_RS08730	COG0366	Alpha amylase catalytic
JYA99_RS08735	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS08745	COG0765	amino acid transport
JYA99_RS08750	COG1126	abc transporter atp-binding protein
JYA99_RS08755	COG2197	response regulator
JYA99_RS08765	COG2197	response regulator
JYA99_RS08800	COG3318	Belongs to the UPF0149 family
JYA99_RS08800	COG3012	SEC-C Motif Domain Protein
JYA99_RS08805	COG0814	amino acid
JYA99_RS08815	COG1528	Iron-storage protein
JYA99_RS08830	COG0477	Major facilitator Superfamily
JYA99_RS08840	COG2211	Major facilitator Superfamily
JYA99_RS08850	COG1528	Iron-storage protein
JYA99_RS08860	COG1879	ABC-type sugar transport system periplasmic component
JYA99_RS08870	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS08895	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
JYA99_RS08905	COG3102	Protein conserved in bacteria
JYA99_RS08925	COG3788	relative of glutathione S-transferase, MAPEG superfamily
JYA99_RS08930	COG1801	Protein of unknown function DUF72
JYA99_RS08935	COG1335	isochorismatase
JYA99_RS08945	COG0494	nUDIX hydrolase
JYA99_RS08970	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JYA99_RS08980	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
JYA99_RS08985	COG0739	heme binding
JYA99_RS08990	COG1560	Kdo2-lipid A biosynthetic process
JYA99_RS09000	COG1737	Transcriptional regulator
JYA99_RS09010	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JYA99_RS09015	COG0129	dihydroxy-acid dehydratase activity
JYA99_RS09020	COG0800	Aldolase
JYA99_RS09030	COG3141	response to X-ray
JYA99_RS09035	COG2979	Protein of unknown function (DUF533)
JYA99_RS09040	COG1770	oligopeptidase
JYA99_RS09045	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JYA99_RS09055	COG2372	response to copper ion
JYA99_RS09060	COG1276	copper resistance
JYA99_RS09075	COG2990	Protein conserved in bacteria
JYA99_RS09100	COG3008	intermembrane lipid transfer
JYA99_RS09105	COG2995	paraquat-inducible protein a
JYA99_RS09110	COG1956	GAF domain-containing protein
JYA99_RS09130	COG2814	Major facilitator Superfamily
JYA99_RS09135	COG1414	Transcriptional regulator
JYA99_RS09165	COG0768	penicillin binding
JYA99_RS09170	COG2226	methyltransferase
JYA99_RS09185	COG3716	PTS system mannose fructose sorbose family IID component
JYA99_RS09190	COG3715	PTS system
JYA99_RS09195	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYA99_RS09195	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS09200	COG1253	flavin adenine dinucleotide binding
JYA99_RS09205	COG2200	EAL domain
JYA99_RS09210	COG1760	l-serine dehydratase
JYA99_RS09230	COG0251	oxidation-reduction process
JYA99_RS09235	COG1199	ATP-dependent helicase activity
JYA99_RS09245	COG3065	identical protein binding
JYA99_RS09255	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JYA99_RS09265	COG2894	cell division
JYA99_RS09280	COG0179	Fumarylacetoacetate (FAA) hydrolase
JYA99_RS09310	COG2719	SpoVR family
JYA99_RS09335	COG1619	proteins homologs of microcin C7 resistance protein MccF
JYA99_RS09345	COG4774	siderophore transport
JYA99_RS09360	COG2308	Evidence 4 Homologs of previously reported genes of
JYA99_RS09400	COG0583	DNA-binding transcription factor activity
JYA99_RS09405	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JYA99_RS09420	COG1882	Formate acetyltransferase
JYA99_RS09455	COG0583	DNA-binding transcription factor activity
JYA99_RS09485	COG0583	DNA-binding transcription factor activity
JYA99_RS09500	COG3122	Protein conserved in bacteria
JYA99_RS09520	COG2885	chlorophyll binding
JYA99_RS09625	COG0012	GTP binding
JYA99_RS09645	COG0659	secondary active sulfate transmembrane transporter activity
JYA99_RS09675	COG2890	protein-(glutamine-N5) methyltransferase activity
JYA99_RS09695	COG0387	Pfam Sodium calcium exchanger
JYA99_RS09700	COG4572	Cation transport regulator
JYA99_RS09705	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
JYA99_RS09715	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JYA99_RS09720	COG3707	response regulator
JYA99_RS09725	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JYA99_RS09735	COG1116	anion transmembrane transporter activity
JYA99_RS09740	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JYA99_RS09740	COG2146	nitrite reductase [NAD(P)H] activity
JYA99_RS09745	COG0243	molybdopterin cofactor binding
JYA99_RS09750	COG4932	domain protein
JYA99_RS09755	COG2197	response regulator
JYA99_RS09760	COG3850	Histidine kinase
JYA99_RS09765	COG2223	nitrite transmembrane transporter activity
JYA99_RS09775	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JYA99_RS09780	COG1140	nitrate reductase beta subunit
JYA99_RS09785	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JYA99_RS09790	COG2181	nitrate reductase activity
JYA99_RS09800	COG1522	sequence-specific DNA binding
JYA99_RS09830	COG0788	formyltetrahydrofolate deformylase activity
JYA99_RS09840	COG1752	Esterase of the alpha-beta hydrolase superfamily
JYA99_RS09845	COG0745	RESPONSE REGULATOR receiver
JYA99_RS09850	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JYA99_RS09855	COG2916	Histone family protein nucleoid-structuring protein H-NS
JYA99_RS09865	COG1435	thymidine kinase activity
JYA99_RS09870	COG1454	alcohol dehydrogenase
JYA99_RS09870	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS09880	COG2095	MarC family integral membrane protein
JYA99_RS09885	COG4166	transmembrane transport
JYA99_RS09890	COG0601	transmembrane transport
JYA99_RS09895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYA99_RS09900	COG0444	Belongs to the ABC transporter superfamily
JYA99_RS09910	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JYA99_RS09930	COG2353	YceI-like domain
JYA99_RS09940	COG2350	Protein conserved in bacteria
JYA99_RS09950	COG3001	Fructosamine kinase
JYA99_RS09960	COG1105	Belongs to the carbohydrate kinase PfkB family
JYA99_RS09965	COG3137	Salt-induced outer membrane protein
JYA99_RS10005	COG0072	phenylalanine-tRNA ligase activity
JYA99_RS10005	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JYA99_RS10025	COG0583	DNA-binding transcription factor activity
JYA99_RS10045	COG0386	Belongs to the glutathione peroxidase family
JYA99_RS10055	COG0791	NLP P60 protein
JYA99_RS10065	COG4256	Hemin uptake protein
JYA99_RS10070	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JYA99_RS10085	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JYA99_RS10085	COG0574	Belongs to the PEP-utilizing enzyme family
JYA99_RS10095	COG0628	permease
JYA99_RS10100	COG0277	FAD linked oxidase domain protein
JYA99_RS10100	COG0247	lactate metabolic process
JYA99_RS10105	COG2050	protein possibly involved in aromatic compounds catabolism
JYA99_RS10110	COG2261	transglycosylase associated protein
JYA99_RS10135	COG1120	ATPase activity
JYA99_RS10140	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS10150	COG0583	DNA-binding transcription factor activity
JYA99_RS10175	COG1304	FMN binding
JYA99_RS10180	COG1309	transcriptional regulator
JYA99_RS10200	COG0316	Belongs to the HesB IscA family
JYA99_RS10205	COG0719	Fe-S assembly protein
JYA99_RS10210	COG0396	ATPase activity
JYA99_RS10215	COG0719	Fe-S assembly protein
JYA99_RS10230	COG1376	ErfK ybiS ycfS ynhG family protein
JYA99_RS10260	COG1309	transcriptional regulator
JYA99_RS10265	COG1082	Xylose isomerase domain protein TIM barrel
JYA99_RS10265	COG3185	4-Hydroxyphenylpyruvate dioxygenase
JYA99_RS10270	COG2271	Major facilitator Superfamily
JYA99_RS10275	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JYA99_RS10285	COG1120	ATPase activity
JYA99_RS10290	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS10295	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JYA99_RS10300	COG1414	Transcriptional regulator
JYA99_RS10335	COG2814	Major facilitator Superfamily
JYA99_RS10355	COG0583	DNA-binding transcription factor activity
JYA99_RS10360	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYA99_RS10380	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYA99_RS10385	COG1116	anion transmembrane transporter activity
JYA99_RS10390	COG4774	siderophore transport
JYA99_RS10395	COG1120	ATPase activity
JYA99_RS10405	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS10425	COG0765	amino acid transport
JYA99_RS10430	COG1126	abc transporter atp-binding protein
JYA99_RS10470	COG3383	formate dehydrogenase (NAD+) activity
JYA99_RS10475	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
JYA99_RS10485	COG1175	transmembrane transport
JYA99_RS10515	COG4133	protoheme IX ABC transporter activity
JYA99_RS10520	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JYA99_RS10525	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JYA99_RS10540	COG1138	Cytochrome C-type biogenesis protein
JYA99_RS10545	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JYA99_RS10550	COG4235	cytochrome complex assembly
JYA99_RS10550	COG3088	subunit of a heme lyase
JYA99_RS10570	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JYA99_RS10585	COG3850	Histidine kinase
JYA99_RS10585	COG5002	protein histidine kinase activity
JYA99_RS10590	COG0745	RESPONSE REGULATOR receiver
JYA99_RS10605	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYA99_RS10640	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS10645	COG2610	gluconate transmembrane transporter activity
JYA99_RS10650	COG1250	3-hydroxyacyl-CoA dehydrogenase
JYA99_RS10660	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JYA99_RS10670	COG0583	DNA-binding transcription factor activity
JYA99_RS10700	COG2814	Major facilitator Superfamily
JYA99_RS10715	COG0277	FAD linked oxidase domain protein
JYA99_RS10720	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYA99_RS10745	COG0402	S-adenosylhomocysteine deaminase activity
JYA99_RS10780	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JYA99_RS10790	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS10795	COG0531	amino acid
JYA99_RS10825	COG4608	Belongs to the ABC transporter superfamily
JYA99_RS10830	COG0444	Belongs to the ABC transporter superfamily
JYA99_RS10855	COG0346	lactoylglutathione lyase activity
JYA99_RS10860	COG1349	DNA-binding transcription factor activity
JYA99_RS10895	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
JYA99_RS10915	COG0300	oxidoreductase activity
JYA99_RS10940	COG3179	chitinase
JYA99_RS11015	COG0307	riboflavin synthase, alpha
JYA99_RS11020	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JYA99_RS11025	COG2814	Major facilitator Superfamily
JYA99_RS11030	COG0583	DNA-binding transcription factor activity
JYA99_RS11045	COG2814	Major facilitator Superfamily
JYA99_RS11060	COG0791	NLP P60 protein
JYA99_RS11065	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JYA99_RS11075	COG0346	lactoylglutathione lyase activity
JYA99_RS11080	COG1902	pentaerythritol trinitrate reductase activity
JYA99_RS11085	COG1309	transcriptional regulator
JYA99_RS11090	COG3313	Fe-S protein
JYA99_RS11095	COG4989	oxidoreductase activity
JYA99_RS11100	COG2032	superoxide dismutase activity
JYA99_RS11105	COG1289	transmembrane transporter activity
JYA99_RS11110	COG1566	PFAM secretion protein HlyD family protein
JYA99_RS11125	COG3706	GGDEF domain
JYA99_RS11140	COG3895	Periplasmic Protein
JYA99_RS11155	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JYA99_RS11160	COG0625	glutathione transferase activity
JYA99_RS11170	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JYA99_RS11180	COG4659	FMN binding
JYA99_RS11215	COG2723	6-phospho-beta-galactosidase activity
JYA99_RS11225	COG0673	inositol 2-dehydrogenase activity
JYA99_RS11235	COG2814	Major facilitator Superfamily
JYA99_RS11255	COG3038	cytochrome b561
JYA99_RS11275	COG0583	DNA-binding transcription factor activity
JYA99_RS11280	COG3485	protocatechuate 3,4-dioxygenase
JYA99_RS11285	COG3485	protocatechuate 3,4-dioxygenase
JYA99_RS11290	COG5383	Protein conserved in bacteria
JYA99_RS11295	COG2272	Belongs to the type-B carboxylesterase lipase family
JYA99_RS11310	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JYA99_RS11315	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JYA99_RS11320	COG1275	C4-dicarboxylate transporter malic acid transport protein
JYA99_RS11325	COG0500	methyltransferase
JYA99_RS11340	COG2207	Transcriptional regulator
JYA99_RS11340	COG3708	Transcriptional regulator
JYA99_RS11345	COG3135	benzoate transporter
JYA99_RS11350	COG1396	sequence-specific DNA binding
JYA99_RS11360	COG0826	peptidase U32
JYA99_RS11380	COG1294	oxidase, subunit
JYA99_RS11385	COG1271	oxidase subunit
JYA99_RS11390	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYA99_RS11395	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JYA99_RS11400	COG3842	ATPase activity
JYA99_RS11405	COG1176	ABC-type spermidine putrescine transport system, permease component I
JYA99_RS11410	COG1177	transmembrane transport
JYA99_RS11415	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS11450	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS11455	COG0747	negative chemotaxis
JYA99_RS11465	COG3238	Protein conserved in bacteria
JYA99_RS11470	COG1247	-acetyltransferase
JYA99_RS11480	COG2130	NADP-dependent
JYA99_RS11495	COG3691	Protein conserved in bacteria
JYA99_RS11500	COG1228	amidohydrolase
JYA99_RS11505	COG4772	TonB-dependent receptor
JYA99_RS11530	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JYA99_RS11535	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYA99_RS11540	COG1473	amidohydrolase
JYA99_RS11545	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYA99_RS11550	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS11565	COG1126	abc transporter atp-binding protein
JYA99_RS11575	COG0625	glutathione transferase activity
JYA99_RS11585	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JYA99_RS11590	COG3842	ATPase activity
JYA99_RS11595	COG1840	ABC-type Fe3 transport system, periplasmic component
JYA99_RS11600	COG1178	ABC-type Fe3 transport system permease component
JYA99_RS11605	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JYA99_RS11610	COG2181	nitrate reductase activity
JYA99_RS11615	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JYA99_RS11620	COG1140	nitrate reductase beta subunit
JYA99_RS11625	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JYA99_RS11645	COG1414	Transcriptional regulator
JYA99_RS11650	COG4948	Mandelate Racemase Muconate Lactonizing
JYA99_RS11655	COG4829	muconolactone delta-isomerase
JYA99_RS11660	COG3485	protocatechuate 3,4-dioxygenase
JYA99_RS11670	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
JYA99_RS11695	COG0437	4 iron, 4 sulfur cluster binding
JYA99_RS11700	COG2864	formate dehydrogenase
JYA99_RS11715	COG2326	polyphosphate kinase activity
JYA99_RS11725	COG2814	Major facilitator Superfamily
JYA99_RS11735	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYA99_RS11745	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYA99_RS11755	COG0747	negative chemotaxis
JYA99_RS11760	COG1064	alcohol dehydrogenase
JYA99_RS11775	COG0488	(ABC) transporter
JYA99_RS11820	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS11825	COG3729	General stress protein
JYA99_RS11835	COG3685	Protein conserved in bacteria
JYA99_RS11845	COG0366	Alpha amylase catalytic
JYA99_RS11855	COG2323	membrane
JYA99_RS11865	COG3111	PFAM Bacterial OB fold (BOF) protein
JYA99_RS11875	COG1764	response to oxidative stress
JYA99_RS11900	COG3781	membrane
JYA99_RS11905	COG0243	molybdopterin cofactor binding
JYA99_RS11910	COG0583	DNA-binding transcription factor activity
JYA99_RS11915	COG1447	Phosphotransferase system cellobiose-specific component IIA
JYA99_RS11920	COG2814	Major facilitator Superfamily
JYA99_RS11925	COG1285	pathogenesis
JYA99_RS11930	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JYA99_RS11940	COG0583	DNA-binding transcription factor activity
JYA99_RS11960	COG0519	Catalyzes the synthesis of GMP from XMP
JYA99_RS11960	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JYA99_RS12010	COG2205	protein histidine kinase activity
JYA99_RS12025	COG0076	glutamate decarboxylase activity
JYA99_RS12030	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JYA99_RS12035	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JYA99_RS12040	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYA99_RS12045	COG1116	anion transmembrane transporter activity
JYA99_RS12050	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JYA99_RS12065	COG0673	inositol 2-dehydrogenase activity
JYA99_RS12075	COG1609	Transcriptional regulator
JYA99_RS12080	COG3706	GGDEF domain
JYA99_RS12085	COG0402	S-adenosylhomocysteine deaminase activity
JYA99_RS12090	COG1953	Uracil, thiamine, allantoin
JYA99_RS12130	COG0406	alpha-ribazole phosphatase activity
JYA99_RS12165	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JYA99_RS12230	COG0765	amino acid transport
JYA99_RS12240	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JYA99_RS12250	COG2070	2-Nitropropane dioxygenase
JYA99_RS12255	COG0583	DNA-binding transcription factor activity
JYA99_RS12265	COG1902	pentaerythritol trinitrate reductase activity
JYA99_RS12270	COG4529	Protein conserved in bacteria
JYA99_RS12275	COG0477	Major facilitator Superfamily
JYA99_RS12320	COG2223	nitrite transmembrane transporter activity
JYA99_RS12330	COG1609	Transcriptional regulator
JYA99_RS12335	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS12345	COG3037	sugar-specific permease SgaT UlaA
JYA99_RS12350	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JYA99_RS12360	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JYA99_RS12365	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JYA99_RS12365	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JYA99_RS12365	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JYA99_RS12380	COG0583	DNA-binding transcription factor activity
JYA99_RS12385	COG0583	DNA-binding transcription factor activity
JYA99_RS12390	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JYA99_RS12400	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JYA99_RS12415	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS12425	COG1609	Transcriptional regulator
JYA99_RS12455	COG1652	LysM domain
JYA99_RS12480	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JYA99_RS12480	COG0456	acetyltransferase
JYA99_RS12490	COG0667	Aldo Keto reductase
JYA99_RS12495	COG0667	Aldo Keto reductase
JYA99_RS12500	COG3386	PFAM SMP-30 Gluconolaconase
JYA99_RS12530	COG2315	Protein conserved in bacteria
JYA99_RS12585	COG1929	Belongs to the glycerate kinase type-1 family
JYA99_RS12590	COG3835	regulator
JYA99_RS12610	COG2186	Transcriptional regulator
JYA99_RS12615	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYA99_RS12615	COG1263	PTS System
JYA99_RS12625	COG2814	Major facilitator Superfamily
JYA99_RS12630	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS12630	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS12645	COG2819	hydrolase of the alpha beta superfamily
JYA99_RS12650	COG5001	Diguanylate cyclase
JYA99_RS12650	COG3300	MHYT domain
JYA99_RS12685	COG3188	usher protein
JYA99_RS12695	COG1649	PFAM Uncharacterised BCR, COG1649
JYA99_RS12700	COG3550	peptidyl-serine autophosphorylation
JYA99_RS12705	COG1396	sequence-specific DNA binding
JYA99_RS12710	COG2351	hydroxyisourate hydrolase activity
JYA99_RS12715	COG3195	allantoin biosynthetic process
JYA99_RS12715	COG3648	Uricase
JYA99_RS12720	COG2233	PERMEase
JYA99_RS12750	COG2207	Transcriptional regulator
JYA99_RS12765	COG4628	conserved protein (DUF2132)
JYA99_RS12785	COG2011	ABC-type metal ion transport system permease component
JYA99_RS12790	COG2070	2-Nitropropane dioxygenase
JYA99_RS12800	COG0477	Major facilitator Superfamily
JYA99_RS12850	COG2199	diguanylate cyclase activity
JYA99_RS12865	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS12870	COG0583	DNA-binding transcription factor activity
JYA99_RS12880	COG0039	L-malate dehydrogenase activity
JYA99_RS12885	COG1349	DNA-binding transcription factor activity
JYA99_RS12890	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JYA99_RS12905	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JYA99_RS12910	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JYA99_RS12915	COG2271	Major facilitator Superfamily
JYA99_RS12945	COG4977	sequence-specific DNA binding
JYA99_RS12955	COG0697	spore germination
JYA99_RS12960	COG2814	Major facilitator Superfamily
JYA99_RS12990	COG0683	leucine binding
JYA99_RS12995	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JYA99_RS13035	COG2223	nitrite transmembrane transporter activity
JYA99_RS13040	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JYA99_RS13055	COG1349	DNA-binding transcription factor activity
JYA99_RS13060	COG2084	Dehydrogenase
JYA99_RS13065	COG3395	kinase activity
JYA99_RS13070	COG0235	Class ii aldolase
JYA99_RS13075	COG3622	Belongs to the hyi family
JYA99_RS13080	COG2610	gluconate transmembrane transporter activity
JYA99_RS13085	COG2207	Transcriptional regulator
JYA99_RS13085	COG3708	Transcriptional regulator
JYA99_RS13100	COG2200	EAL domain
JYA99_RS13105	COG1546	Belongs to the CinA family
JYA99_RS13110	COG0071	Belongs to the small heat shock protein (HSP20) family
JYA99_RS13140	COG2135	peptidase activity
JYA99_RS13145	COG2207	Transcriptional regulator
JYA99_RS13155	COG0339	signal peptide processing
JYA99_RS13160	COG4221	oxidoreductase activity
JYA99_RS13165	COG1802	Transcriptional regulator
JYA99_RS13170	COG0589	response to stress
JYA99_RS13175	COG0246	Mannitol dehydrogenase
JYA99_RS13180	COG2271	Major facilitator Superfamily
JYA99_RS13195	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JYA99_RS13210	COG0243	molybdopterin cofactor binding
JYA99_RS13215	COG0437	4 iron, 4 sulfur cluster binding
JYA99_RS13220	COG3302	dmso reductase anchor subunit
JYA99_RS13235	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JYA99_RS13240	COG1940	carbohydrate kinase activity
JYA99_RS13245	COG0583	DNA-binding transcription factor activity
JYA99_RS13250	COG2814	Major facilitator Superfamily
JYA99_RS13255	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JYA99_RS13265	COG3591	Belongs to the peptidase S1B family
JYA99_RS13285	COG0628	permease
JYA99_RS13315	COG0679	Auxin Efflux Carrier
JYA99_RS13325	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JYA99_RS13350	COG3290	protein histidine kinase activity
JYA99_RS13355	COG4565	transcriptional regulatory protein
JYA99_RS13375	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JYA99_RS13375	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JYA99_RS13385	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JYA99_RS13390	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JYA99_RS13400	COG0183	Belongs to the thiolase family
JYA99_RS13405	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JYA99_RS13415	COG1414	Transcriptional regulator
JYA99_RS13420	COG2840	Smr protein MutS2
JYA99_RS13425	COG0583	DNA-binding transcription factor activity
JYA99_RS13435	COG1473	amidohydrolase
JYA99_RS13440	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JYA99_RS13455	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JYA99_RS13470	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JYA99_RS13475	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JYA99_RS13490	COG0531	amino acid
JYA99_RS13500	COG3136	membrane protein required for alginate biosynthesis
JYA99_RS13505	COG0745	RESPONSE REGULATOR receiver
JYA99_RS13515	COG2205	protein histidine kinase activity
JYA99_RS13525	COG0114	fumarate hydratase activity
JYA99_RS13530	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JYA99_RS13530	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JYA99_RS13535	COG1482	cell wall glycoprotein biosynthetic process
JYA99_RS13540	COG5339	Protein conserved in bacteria
JYA99_RS13545	COG1609	Transcriptional regulator
JYA99_RS13550	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYA99_RS13550	COG1263	PTS System
JYA99_RS13555	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JYA99_RS13580	COG2391	methyltransferase activity
JYA99_RS13585	COG0425	Belongs to the sulfur carrier protein TusA family
JYA99_RS13590	COG5562	phage envelope protein
JYA99_RS13595	COG0401	homolog of Blt101
JYA99_RS13600	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JYA99_RS13605	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS13615	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JYA99_RS13620	COG0477	Major facilitator Superfamily
JYA99_RS13625	COG1113	amino acid transport
JYA99_RS13630	COG2988	succinylglutamate desuccinylase activity
JYA99_RS13635	COG3724	N-succinylarginine dihydrolase activity
JYA99_RS13640	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS13645	COG3138	arginine N-succinyltransferase
JYA99_RS13650	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JYA99_RS13660	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JYA99_RS13665	COG0667	Aldo Keto reductase
JYA99_RS13670	COG0583	DNA-binding transcription factor activity
JYA99_RS13695	COG4122	O-methyltransferase activity
JYA99_RS13700	COG1643	Atp-dependent helicase
JYA99_RS13715	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JYA99_RS13720	COG3327	negative regulation of DNA-templated transcription, initiation
JYA99_RS13725	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
JYA99_RS13730	COG0183	Belongs to the thiolase family
JYA99_RS13735	COG2050	protein possibly involved in aromatic compounds catabolism
JYA99_RS13740	COG1250	3-hydroxyacyl-CoA dehydrogenase
JYA99_RS13745	COG1024	Enoyl-CoA hydratase
JYA99_RS13750	COG1024	Enoyl-CoA hydratase
JYA99_RS13755	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JYA99_RS13760	COG2151	metal-sulfur cluster biosynthetic enzyme
JYA99_RS13765	COG3396	Phenylacetate-CoA oxygenase
JYA99_RS13770	COG3460	Phenylacetate-CoA oxygenase
JYA99_RS13775	COG3396	Phenylacetate-CoA oxygenase
JYA99_RS13780	COG2030	dehydratase
JYA99_RS13780	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS13815	COG2072	flavoprotein involved in K transport
JYA99_RS13820	COG0583	DNA-binding transcription factor activity
JYA99_RS13825	COG1126	abc transporter atp-binding protein
JYA99_RS13835	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS13850	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS13855	COG2207	Transcriptional regulator
JYA99_RS13860	COG3784	Protein of unknown function (DUF1318)
JYA99_RS13870	COG2911	Protein conserved in bacteria
JYA99_RS13875	COG0586	Pfam SNARE associated Golgi protein
JYA99_RS13880	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JYA99_RS13885	COG3187	Heat shock protein
JYA99_RS13890	COG3042	response to heat
JYA99_RS13895	COG0674	pyruvate-flavodoxin oxidoreductase activity
JYA99_RS13895	COG1013	pyruvate-flavodoxin oxidoreductase activity
JYA99_RS13895	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JYA99_RS13895	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JYA99_RS13900	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JYA99_RS13910	COG0589	response to stress
JYA99_RS13920	COG0513	Belongs to the DEAD box helicase family
JYA99_RS13930	COG1349	DNA-binding transcription factor activity
JYA99_RS13935	COG0673	inositol 2-dehydrogenase activity
JYA99_RS13950	COG2011	ABC-type metal ion transport system permease component
JYA99_RS13965	COG0436	Aminotransferase
JYA99_RS13970	COG0604	alcohol dehydrogenase
JYA99_RS14000	COG0583	DNA-binding transcription factor activity
JYA99_RS14020	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS14025	COG1309	transcriptional regulator
JYA99_RS14030	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS14140	COG2885	chlorophyll binding
JYA99_RS14165	COG0693	protein deglycase activity
JYA99_RS14170	COG1078	dGTPase activity
JYA99_RS14175	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS14180	COG0583	DNA-binding transcription factor activity
JYA99_RS14200	COG0656	L-ascorbic acid biosynthetic process
JYA99_RS14225	COG4166	transmembrane transport
JYA99_RS14235	COG2866	Carboxypeptidase
JYA99_RS14240	COG4948	Mandelate Racemase Muconate Lactonizing
JYA99_RS14245	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JYA99_RS14250	COG3180	Ammonia monooxygenase
JYA99_RS14260	COG1486	melibiose metabolic process
JYA99_RS14265	COG0583	DNA-binding transcription factor activity
JYA99_RS14275	COG3106	COG3106 Predicted ATPase
JYA99_RS14285	COG1983	PspC domain protein
JYA99_RS14295	COG1842	Phage shock protein A
JYA99_RS14300	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JYA99_RS14310	COG1473	amidohydrolase
JYA99_RS14325	COG0702	epimerase
JYA99_RS14340	COG4171	peptide transport system, permease
JYA99_RS14355	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JYA99_RS14365	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JYA99_RS14370	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JYA99_RS14370	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JYA99_RS14385	COG1349	DNA-binding transcription factor activity
JYA99_RS14395	COG0023	Translation Initiation Factor
JYA99_RS14405	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JYA99_RS14410	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
JYA99_RS14415	COG0671	phosphoesterase, PA-phosphatase related
JYA99_RS14425	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JYA99_RS14450	COG0616	signal peptide processing
JYA99_RS14460	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS14465	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
JYA99_RS14475	COG0583	DNA-binding transcription factor activity
JYA99_RS14485	COG0009	L-threonylcarbamoyladenylate synthase
JYA99_RS14495	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JYA99_RS14500	COG0512	Glutamine amidotransferase of anthranilate synthase
JYA99_RS14500	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JYA99_RS14505	COG0134	indole-3-glycerol-phosphate synthase activity
JYA99_RS14505	COG0135	phosphoribosylanthranilate isomerase activity
JYA99_RS14560	COG4774	siderophore transport
JYA99_RS14570	COG3047	cAMP biosynthetic process
JYA99_RS14575	COG0727	PFAM Uncharacterised protein family (UPF0153)
JYA99_RS14605	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYA99_RS14610	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS14615	COG1988	membrane-bound metal-dependent
JYA99_RS14620	COG1823	symporter activity
JYA99_RS14630	COG0753	catalase activity
JYA99_RS14640	COG1486	melibiose metabolic process
JYA99_RS14645	COG2169	Transcriptional regulator
JYA99_RS14645	COG1917	Cupin 2, conserved barrel domain protein
JYA99_RS14650	COG1447	Phosphotransferase system cellobiose-specific component IIA
JYA99_RS14655	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS14665	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS14670	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JYA99_RS14685	COG3678	ATP-independent chaperone mediated protein folding
JYA99_RS14695	COG3724	N-succinylarginine dihydrolase activity
JYA99_RS14705	COG3138	arginine N-succinyltransferase
JYA99_RS14715	COG0708	Exodeoxyribonuclease III
JYA99_RS14720	COG0398	Pfam SNARE associated Golgi protein
JYA99_RS14725	COG0398	Pfam SNARE associated Golgi protein
JYA99_RS14730	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JYA99_RS14735	COG4134	Bacterial extracellular solute-binding protein
JYA99_RS14740	COG4135	transport system, permease component
JYA99_RS14745	COG4136	ATPase activity
JYA99_RS14750	COG2897	thiosulfate sulfurtransferase activity
JYA99_RS14755	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JYA99_RS14760	COG0494	nUDIX hydrolase
JYA99_RS14765	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JYA99_RS14770	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS14770	COG0604	alcohol dehydrogenase
JYA99_RS14770	COG3321	synthase
JYA99_RS14775	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JYA99_RS14780	COG0709	Synthesizes selenophosphate from selenide and ATP
JYA99_RS14790	COG0778	Nitroreductase
JYA99_RS14795	COG0616	signal peptide processing
JYA99_RS14800	COG0252	asparaginase activity
JYA99_RS14805	COG1335	isochorismatase
JYA99_RS14820	COG3139	Protein of unknown function (DUF1315)
JYA99_RS14840	COG0656	L-ascorbic acid biosynthetic process
JYA99_RS14845	COG3713	MltA-interacting MipA family protein
JYA99_RS14850	COG2766	serine protein kinase
JYA99_RS14865	COG0386	Belongs to the glutathione peroxidase family
JYA99_RS14890	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS14895	COG0583	DNA-binding transcription factor activity
JYA99_RS14900	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JYA99_RS14905	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JYA99_RS14915	COG0859	PFAM glycosyl transferase family 9
JYA99_RS14920	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JYA99_RS14930	COG2207	Transcriptional regulator
JYA99_RS14935	COG2807	transmembrane transport
JYA99_RS14940	COG0504	CTP synthase activity
JYA99_RS14945	COG1683	Conserved Protein
JYA99_RS14950	COG3189	MarR family transcriptional regulator
JYA99_RS14955	COG3042	response to heat
JYA99_RS15090	COG4695	Portal protein
JYA99_RS15160	COG4974	Belongs to the 'phage' integrase family
JYA99_RS15165	COG2203	Gaf domain
JYA99_RS15165	COG2199	diguanylate cyclase activity
JYA99_RS15185	COG3182	Iron-regulated membrane protein
JYA99_RS15195	COG1560	Kdo2-lipid A biosynthetic process
JYA99_RS15205	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JYA99_RS15210	COG3706	GGDEF domain
JYA99_RS15215	COG0583	DNA-binding transcription factor activity
JYA99_RS15220	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JYA99_RS15250	COG1294	oxidase, subunit
JYA99_RS15255	COG1271	oxidase subunit
JYA99_RS15260	COG3546	catalase activity
JYA99_RS15265	COG3685	Protein conserved in bacteria
JYA99_RS15270	COG3685	Protein conserved in bacteria
JYA99_RS15275	COG3729	General stress protein
JYA99_RS15280	COG1063	alcohol dehydrogenase
JYA99_RS15285	COG3813	Protein conserved in bacteria
JYA99_RS15305	COG0640	Transcriptional regulator
JYA99_RS15310	COG0538	isocitrate dehydrogenase activity
JYA99_RS15315	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JYA99_RS15325	COG3706	GGDEF domain
JYA99_RS15410	COG0616	signal peptide processing
JYA99_RS15425	COG4626	Terminase
JYA99_RS15425	COG1802	Transcriptional regulator
JYA99_RS15470	COG3772	lysozyme
JYA99_RS15495	COG1403	HNH endonuclease
JYA99_RS15510	COG2378	regulation of single-species biofilm formation
JYA99_RS15515	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS15565	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JYA99_RS15575	COG0582	viral genome integration into host DNA
JYA99_RS15580	COG0538	isocitrate dehydrogenase activity
JYA99_RS15585	COG1187	pseudouridine synthase activity
JYA99_RS15605	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JYA99_RS15625	COG2205	protein histidine kinase activity
JYA99_RS15630	COG2850	peptidyl-arginine hydroxylation
JYA99_RS15650	COG1177	transmembrane transport
JYA99_RS15665	COG0318	PFAM AMP-dependent synthetase and ligase
JYA99_RS15670	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JYA99_RS15675	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JYA99_RS15680	COG0698	ribose 5-phosphate isomerase
JYA99_RS15695	COG3395	kinase activity
JYA99_RS15710	COG2390	Transcriptional regulator
JYA99_RS15720	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JYA99_RS15730	COG4591	ABC-type transport system involved in lipoprotein release permease component
JYA99_RS15740	COG4591	ABC-type transport system involved in lipoprotein release permease component
JYA99_RS15750	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JYA99_RS15755	COG1376	ErfK ybiS ycfS ynhG family protein
JYA99_RS15755	COG1388	LysM domain
JYA99_RS15770	COG1309	transcriptional regulator
JYA99_RS15785	COG3134	Outer membrane lipoprotein
JYA99_RS15790	COG1252	NADH dehydrogenase
JYA99_RS15815	COG5633	Lipoprotein
JYA99_RS15820	COG0537	adenosine 5'-monophosphoramidase activity
JYA99_RS15830	COG0084	hydrolase, TatD family'
JYA99_RS15835	COG0470	DNA polymerase III
JYA99_RS15845	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JYA99_RS15850	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JYA99_RS15855	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JYA99_RS15870	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JYA99_RS15890	COG1399	metal-binding, possibly nucleic acid-binding protein
JYA99_RS15910	COG1530	ribonuclease E activity
JYA99_RS15915	COG0583	DNA-binding transcription factor activity
JYA99_RS15920	COG2814	Major facilitator Superfamily
JYA99_RS15940	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JYA99_RS15985	COG1560	Kdo2-lipid A biosynthetic process
JYA99_RS16000	COG5645	(Lipo)protein
JYA99_RS16035	COG3381	protein complex oligomerization
JYA99_RS16065	COG1309	transcriptional regulator
JYA99_RS16070	COG0583	DNA-binding transcription factor activity
JYA99_RS16080	COG1335	isochorismatase
JYA99_RS16095	COG1702	phosphate starvation-inducible protein PhoH
JYA99_RS16115	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JYA99_RS16125	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JYA99_RS16140	COG1309	transcriptional regulator
JYA99_RS16175	COG2233	PERMEase
JYA99_RS16185	COG3729	General stress protein
JYA99_RS16215	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS16230	COG0531	amino acid
JYA99_RS16235	COG0174	glutamine synthetase
JYA99_RS16240	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JYA99_RS16245	COG1396	sequence-specific DNA binding
JYA99_RS16245	COG1917	Cupin 2, conserved barrel domain protein
JYA99_RS16250	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS16255	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JYA99_RS16260	COG0583	DNA-binding transcription factor activity
JYA99_RS16265	COG0473	3-isopropylmalate dehydrogenase activity
JYA99_RS16270	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JYA99_RS16275	COG4638	Rieske (2fe-2S)
JYA99_RS16280	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS16285	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JYA99_RS16310	COG0670	Belongs to the BI1 family
JYA99_RS16325	COG2207	Transcriptional regulator
JYA99_RS16330	COG1881	PFAM PEBP family protein
JYA99_RS16345	COG1832	CoA-binding protein
JYA99_RS16355	COG0210	DNA helicase
JYA99_RS16360	COG3304	Inner membrane component domain
JYA99_RS16365	COG1289	transmembrane transporter activity
JYA99_RS16370	COG3070	regulator of competence-specific genes
JYA99_RS16390	COG1067	ATP-dependent peptidase activity
JYA99_RS16400	COG3130	regulation of translation
JYA99_RS16405	COG3009	Protein conserved in bacteria
JYA99_RS16410	COG3008	intermembrane lipid transfer
JYA99_RS16410	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JYA99_RS16415	COG2995	paraquat-inducible protein a
JYA99_RS16420	COG0488	(ABC) transporter
JYA99_RS16430	COG3217	Mosc domain protein beta barrel domain protein
JYA99_RS16430	COG0633	Ferredoxin
JYA99_RS16445	COG0431	NADPH-dependent FMN reductase
JYA99_RS16450	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JYA99_RS16455	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYA99_RS16460	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYA99_RS16470	COG0308	aminopeptidase N
JYA99_RS16480	COG1473	amidohydrolase
JYA99_RS16490	COG0814	amino acid
JYA99_RS16510	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JYA99_RS16515	COG1448	Aminotransferase
JYA99_RS16520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JYA99_RS16525	COG3108	Peptidase M15
JYA99_RS16530	COG2989	Protein conserved in bacteria
JYA99_RS16540	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
JYA99_RS16550	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JYA99_RS16555	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JYA99_RS16560	COG3173	Aminoglycoside phosphotransferase
JYA99_RS16575	COG3214	Protein conserved in bacteria
JYA99_RS16590	COG0658	competence protein
JYA99_RS16590	COG2333	competence protein COMEC
JYA99_RS16600	COG0539	negative regulation of cytoplasmic translation
JYA99_RS16620	COG2323	membrane
JYA99_RS16625	COG1944	ATP diphosphatase activity
JYA99_RS16630	COG2116	formate transmembrane transporter activity
JYA99_RS16635	COG1882	Formate acetyltransferase
JYA99_RS16640	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JYA99_RS16645	COG0477	Major facilitator Superfamily
JYA99_RS16650	COG3302	dmso reductase anchor subunit
JYA99_RS16655	COG0437	4 iron, 4 sulfur cluster binding
JYA99_RS16660	COG0243	molybdopterin cofactor binding
JYA99_RS16670	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JYA99_RS16680	COG1178	ABC-type Fe3 transport system permease component
JYA99_RS16680	COG1674	ftsk spoiiie
JYA99_RS16690	COG0492	ferredoxin-NADP+ reductase activity
JYA99_RS16695	COG4988	ABC transporter
JYA99_RS16700	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JYA99_RS16715	COG0542	response to heat
JYA99_RS16725	COG1278	Cold shock
JYA99_RS16735	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS16740	COG3593	DNA synthesis involved in DNA repair
JYA99_RS16750	COG2431	L-lysine efflux transmembrane transporter activity
JYA99_RS16760	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JYA99_RS16770	COG0028	Belongs to the TPP enzyme family
JYA99_RS16775	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
JYA99_RS16780	COG0702	epimerase
JYA99_RS16785	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JYA99_RS16790	COG3023	N-Acetylmuramoyl-L-alanine amidase
JYA99_RS16795	COG2203	Gaf domain
JYA99_RS16795	COG5001	Diguanylate cyclase
JYA99_RS16795	COG4251	negative regulation of phosphorylation
JYA99_RS16795	COG3706	GGDEF domain
JYA99_RS16805	COG1126	abc transporter atp-binding protein
JYA99_RS16810	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS16815	COG4215	(ABC) transporter
JYA99_RS16820	COG4160	amino acid transport
JYA99_RS16825	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS16830	COG5002	protein histidine kinase activity
JYA99_RS16835	COG0745	RESPONSE REGULATOR receiver
JYA99_RS16850	COG1177	transmembrane transport
JYA99_RS16855	COG1176	ABC-type spermidine putrescine transport system, permease component I
JYA99_RS16860	COG3842	ATPase activity
JYA99_RS16865	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JYA99_RS16880	COG0778	Nitroreductase
JYA99_RS16905	COG3226	Transcriptional regulator
JYA99_RS16910	COG0738	Major facilitator superfamily
JYA99_RS16915	COG0561	phosphatase activity
JYA99_RS16920	COG2814	Major facilitator Superfamily
JYA99_RS16925	COG0671	phosphoesterase, PA-phosphatase related
JYA99_RS16930	COG1349	DNA-binding transcription factor activity
JYA99_RS16935	COG1686	Belongs to the peptidase S11 family
JYA99_RS16945	COG0625	glutathione transferase activity
JYA99_RS16950	COG2133	pyrroloquinoline quinone binding
JYA99_RS16960	COG2223	nitrite transmembrane transporter activity
JYA99_RS16980	COG0747	negative chemotaxis
JYA99_RS16995	COG0303	'Molybdopterin
JYA99_RS17000	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JYA99_RS17005	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JYA99_RS17010	COG1882	Formate acetyltransferase
JYA99_RS17015	COG0561	phosphatase activity
JYA99_RS17025	COG1609	Transcriptional regulator
JYA99_RS17030	COG2271	Major facilitator Superfamily
JYA99_RS17040	COG0488	(ABC) transporter
JYA99_RS17045	COG2365	Tyrosine phosphatase family
JYA99_RS17050	COG1376	ErfK ybiS ycfS ynhG family protein
JYA99_RS17055	COG2188	Transcriptional regulator
JYA99_RS17060	COG2723	6-phospho-beta-galactosidase activity
JYA99_RS17065	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JYA99_RS17080	COG2194	sulfuric ester hydrolase activity
JYA99_RS17085	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JYA99_RS17100	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS17105	COG0765	amino acid transport
JYA99_RS17110	COG1126	abc transporter atp-binding protein
JYA99_RS17115	COG0668	transmembrane transport
JYA99_RS17125	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JYA99_RS17135	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JYA99_RS17145	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JYA99_RS17150	COG1199	ATP-dependent helicase activity
JYA99_RS17155	COG0513	Belongs to the DEAD box helicase family
JYA99_RS17160	COG3958	Transketolase
JYA99_RS17165	COG3959	Transketolase, thiamine diphosphate binding domain
JYA99_RS17170	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS17175	COG2271	Major facilitator Superfamily
JYA99_RS17185	COG0583	DNA-binding transcription factor activity
JYA99_RS17190	COG1309	transcriptional regulator
JYA99_RS17195	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS17200	COG1131	(ABC) transporter
JYA99_RS17205	COG0842	Transport permease protein
JYA99_RS17210	COG0842	Transport permease protein
JYA99_RS17220	COG3568	Endonuclease Exonuclease Phosphatase
JYA99_RS17225	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JYA99_RS17230	COG0392	lysyltransferase activity
JYA99_RS17235	COG0670	Belongs to the BI1 family
JYA99_RS17240	COG0314	molybdopterin synthase activity
JYA99_RS17245	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JYA99_RS17255	COG0521	Mo-molybdopterin cofactor biosynthetic process
JYA99_RS17275	COG0745	RESPONSE REGULATOR receiver
JYA99_RS17280	COG0642	Histidine kinase
JYA99_RS17305	COG2226	methyltransferase
JYA99_RS17320	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JYA99_RS17325	COG1881	PFAM PEBP family protein
JYA99_RS17365	COG4677	pectinesterase activity
JYA99_RS17380	COG0589	response to stress
JYA99_RS17385	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS17420	COG0789	Transcriptional regulator
JYA99_RS17425	COG2200	EAL domain
JYA99_RS17450	COG0561	phosphatase activity
JYA99_RS17460	COG4149	molybdate abc transporter
JYA99_RS17465	COG0725	ABC transporter, periplasmic molybdate-binding protein
JYA99_RS17475	COG2005	Transcriptional regulator
JYA99_RS17475	COG3585	molybdate ion transport
JYA99_RS17480	COG1119	ATPase activity
JYA99_RS17490	COG1085	galactose-1-phosphate uridylyltransferase
JYA99_RS17500	COG2017	converts alpha-aldose to the beta-anomer
JYA99_RS17510	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JYA99_RS17525	COG3201	nicotinamide mononucleotide transporter
JYA99_RS17530	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JYA99_RS17580	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
JYA99_RS17585	COG2885	chlorophyll binding
JYA99_RS17595	COG3064	Membrane
JYA99_RS17600	COG0848	biopolymer transport protein
JYA99_RS17605	COG0811	peptide transport
JYA99_RS17610	COG0824	Thioesterase
JYA99_RS17615	COG3790	cyd operon protein YbgE
JYA99_RS17620	COG4890	Cyd operon protein YbgT
JYA99_RS17625	COG1294	oxidase, subunit
JYA99_RS17630	COG1271	oxidase subunit
JYA99_RS17635	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JYA99_RS17645	COG0508	dehydrogenase complex catalyzes the overall conversion of
JYA99_RS17650	COG0567	Dehydrogenase, E1 component
JYA99_RS17655	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JYA99_RS17660	COG1053	succinate dehydrogenase
JYA99_RS17665	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
JYA99_RS17670	COG2009	succinate dehydrogenase
JYA99_RS17705	COG1984	allophanate hydrolase subunit 2
JYA99_RS17710	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JYA99_RS17725	COG0415	Belongs to the DNA photolyase family
JYA99_RS17755	COG2205	protein histidine kinase activity
JYA99_RS17760	COG0745	RESPONSE REGULATOR receiver
JYA99_RS17770	COG0033	Phosphoglucomutase
JYA99_RS17780	COG0596	Alpha beta hydrolase
JYA99_RS17795	COG0735	belongs to the Fur family
JYA99_RS17835	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JYA99_RS17840	COG1940	carbohydrate kinase activity
JYA99_RS17840	COG1846	Transcriptional regulator
JYA99_RS17845	COG0647	UMP catabolic process
JYA99_RS17850	COG0367	asparagine synthase
JYA99_RS17890	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JYA99_RS17900	COG1702	phosphate starvation-inducible protein PhoH
JYA99_RS17925	COG0765	amino acid transport
JYA99_RS17930	COG0765	amino acid transport
JYA99_RS17935	COG1126	abc transporter atp-binding protein
JYA99_RS17950	COG2888	peptidyl-tyrosine sulfation
JYA99_RS17965	COG1466	dna polymerase III delta subunit
JYA99_RS17980	COG0799	negative regulation of ribosome biogenesis
JYA99_RS17990	COG0768	penicillin binding
JYA99_RS17995	COG0772	Belongs to the SEDS family
JYA99_RS18000	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JYA99_RS18005	COG1686	Belongs to the peptidase S11 family
JYA99_RS18020	COG0583	DNA-binding transcription factor activity
JYA99_RS18035	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JYA99_RS18055	COG3069	C4-dicarboxylate transmembrane transporter activity
JYA99_RS18060	COG3719	Belongs to the RNase T2 family
JYA99_RS18065	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JYA99_RS18085	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JYA99_RS18090	COG0583	DNA-binding transcription factor activity
JYA99_RS18095	COG3969	phosphoadenosine phosphosulfate
JYA99_RS18100	COG1475	DNA binding
JYA99_RS18105	COG0436	Aminotransferase
JYA99_RS18130	COG1129	ABC transporter
JYA99_RS18135	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS18140	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS18150	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JYA99_RS18165	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JYA99_RS18175	COG0402	S-adenosylhomocysteine deaminase activity
JYA99_RS18185	COG0483	inositol monophosphate 1-phosphatase activity
JYA99_RS18190	COG2271	Major facilitator Superfamily
JYA99_RS18220	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS18225	COG1129	ABC transporter
JYA99_RS18230	COG0371	Dehydrogenase
JYA99_RS18235	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS18250	COG2879	small protein
JYA99_RS18255	COG1966	Carbon starvation protein
JYA99_RS18265	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS18270	COG1535	isochorismatase
JYA99_RS18270	COG3433	isochorismatase activity
JYA99_RS18275	COG1021	2,3-dihydroxybenzoate-AMP ligase
JYA99_RS18280	COG1169	isochorismate synthase
JYA99_RS18285	COG4592	Periplasmic binding protein
JYA99_RS18295	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS18300	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS18305	COG1120	ATPase activity
JYA99_RS18310	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
JYA99_RS18310	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JYA99_RS18315	COG3251	PFAM MbtH domain protein
JYA99_RS18320	COG2382	esterase
JYA99_RS18325	COG4771	TonB-dependent receptor
JYA99_RS18330	COG2977	Belongs to the P-Pant transferase superfamily
JYA99_RS18335	COG3958	Transketolase
JYA99_RS18340	COG3959	Transketolase, thiamine diphosphate binding domain
JYA99_RS18345	COG2390	Transcriptional regulator
JYA99_RS18350	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JYA99_RS18355	COG1879	ABC-type sugar transport system periplasmic component
JYA99_RS18365	COG1129	ABC transporter
JYA99_RS18370	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS18380	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS18390	COG0583	DNA-binding transcription factor activity
JYA99_RS18395	COG0668	transmembrane transport
JYA99_RS18405	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JYA99_RS18430	COG0747	negative chemotaxis
JYA99_RS18435	COG0601	transmembrane transport
JYA99_RS18440	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYA99_RS18445	COG0444	Belongs to the ABC transporter superfamily
JYA99_RS18450	COG4608	Belongs to the ABC transporter superfamily
JYA99_RS18460	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JYA99_RS18465	COG4221	oxidoreductase activity
JYA99_RS18475	COG4215	(ABC) transporter
JYA99_RS18480	COG0765	amino acid transport
JYA99_RS18485	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JYA99_RS18500	COG0697	spore germination
JYA99_RS18515	COG4608	Belongs to the ABC transporter superfamily
JYA99_RS18520	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYA99_RS18530	COG4166	transmembrane transport
JYA99_RS18540	COG3698	Phosphodiester glycosidase
JYA99_RS18580	COG2315	Protein conserved in bacteria
JYA99_RS18585	COG0778	Nitroreductase
JYA99_RS18595	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYA99_RS18605	COG3716	PTS system mannose fructose sorbose family IID component
JYA99_RS18610	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JYA99_RS18615	COG2222	sugar isomerase
JYA99_RS18620	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JYA99_RS18620	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JYA99_RS18635	COG0477	Major facilitator Superfamily
JYA99_RS18640	COG0668	transmembrane transport
JYA99_RS18645	COG1609	Transcriptional regulator
JYA99_RS18670	COG3188	usher protein
JYA99_RS18685	COG2771	luxR family
JYA99_RS18695	COG0673	inositol 2-dehydrogenase activity
JYA99_RS18705	COG2211	Major facilitator Superfamily
JYA99_RS18710	COG1113	amino acid transport
JYA99_RS18725	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS18730	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JYA99_RS18740	COG0531	amino acid
JYA99_RS18785	COG0667	Aldo Keto reductase
JYA99_RS18790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS18795	COG1473	amidohydrolase
JYA99_RS18825	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS18830	COG1120	ATPase activity
JYA99_RS18835	COG1566	PFAM secretion protein HlyD family protein
JYA99_RS18880	COG4211	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS18885	COG1129	ABC transporter
JYA99_RS18900	COG0673	inositol 2-dehydrogenase activity
JYA99_RS18930	COG3104	oligopeptide transport
JYA99_RS18935	COG1982	Orn Lys Arg decarboxylase major
JYA99_RS18940	COG0531	amino acid
JYA99_RS18945	COG3710	Transcriptional regulator
JYA99_RS18955	COG1560	Kdo2-lipid A biosynthetic process
JYA99_RS18970	COG3188	usher protein
JYA99_RS18975	COG3121	Chaperone
JYA99_RS18980	COG3539	Fimbrial protein
JYA99_RS19030	COG3210	domain, Protein
JYA99_RS19060	COG2501	S4 domain
JYA99_RS19070	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JYA99_RS19085	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JYA99_RS19090	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JYA99_RS19110	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JYA99_RS19115	COG4181	ATPase activity
JYA99_RS19120	COG2755	lipolytic protein G-D-S-L family
JYA99_RS19125	COG0300	oxidoreductase activity
JYA99_RS19130	COG3118	belongs to the thioredoxin family
JYA99_RS19135	COG0390	transport system, permease component
JYA99_RS19140	COG4619	ABC transporter
JYA99_RS19145	COG0330	HflC and HflK could
JYA99_RS19150	COG1585	Membrane protein implicated in regulation of membrane protease activity
JYA99_RS19165	COG3735	TraB family
JYA99_RS19170	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JYA99_RS19180	COG2223	nitrite transmembrane transporter activity
JYA99_RS19185	COG4651	solute:proton antiporter activity
JYA99_RS19185	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JYA99_RS19190	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JYA99_RS19230	COG2832	Protein of unknown function (DUF454)
JYA99_RS19235	COG3923	Primosomal replication protein n
JYA99_RS19245	COG5464	transposase or invertase
JYA99_RS19250	COG3264	Mechanosensitive ion channel
JYA99_RS19250	COG1196	nuclear chromosome segregation
JYA99_RS19255	COG1309	transcriptional regulator
JYA99_RS19260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS19265	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYA99_RS19280	COG0110	maltose O-acetyltransferase activity
JYA99_RS19330	COG1874	Beta-galactosidase
JYA99_RS19335	COG3867	Arabinogalactan endo-beta-1,4-galactanase
JYA99_RS19340	COG3833	ABC-type maltose transport systems, permease component
JYA99_RS19345	COG1175	transmembrane transport
JYA99_RS19350	COG2182	Extracellular solute-binding protein
JYA99_RS19360	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JYA99_RS19375	COG2364	Membrane
JYA99_RS19405	COG3695	enzyme binding
JYA99_RS19410	COG3126	Type III secretion system lipoprotein chaperone (YscW)
JYA99_RS19415	COG1946	Acyl-CoA thioesterase
JYA99_RS19420	COG0004	ammonium transporteR
JYA99_RS19425	COG0347	Belongs to the P(II) protein family
JYA99_RS19430	COG1132	(ABC) transporter
JYA99_RS19435	COG1132	(ABC) transporter
JYA99_RS19440	COG1522	sequence-specific DNA binding
JYA99_RS19455	COG4533	DNA binding
JYA99_RS19465	COG0824	Thioesterase
JYA99_RS19470	COG1555	photosystem II stabilization
JYA99_RS19475	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JYA99_RS19480	COG0776	regulation of translation
JYA99_RS19485	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JYA99_RS19505	COG0271	Belongs to the BolA IbaG family
JYA99_RS19510	COG3056	Lipoprotein
JYA99_RS19515	COG2223	nitrite transmembrane transporter activity
JYA99_RS19520	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JYA99_RS19525	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JYA99_RS19530	COG1845	cytochrome c oxidase, subunit III
JYA99_RS19535	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JYA99_RS19550	COG1414	Transcriptional regulator
JYA99_RS19555	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JYA99_RS19560	COG1053	succinate dehydrogenase
JYA99_RS19570	COG1053	succinate dehydrogenase
JYA99_RS19585	COG0673	inositol 2-dehydrogenase activity
JYA99_RS19590	COG2814	Major facilitator Superfamily
JYA99_RS19600	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JYA99_RS19605	COG0693	protein deglycase activity
JYA99_RS19625	COG0142	geranyltranstransferase activity
JYA99_RS19635	COG0667	Aldo Keto reductase
JYA99_RS19640	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JYA99_RS19645	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JYA99_RS19660	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JYA99_RS19660	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JYA99_RS19670	COG4238	major outer membrane lipoprotein
JYA99_RS19690	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JYA99_RS19695	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JYA99_RS19700	COG1862	Preprotein translocase
JYA99_RS19725	COG0450	alkyl hydroperoxide reductase
JYA99_RS19735	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS19750	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JYA99_RS19760	COG1228	amidohydrolase
JYA99_RS19770	COG1335	isochorismatase
JYA99_RS19775	COG0583	DNA-binding transcription factor activity
JYA99_RS19780	COG0366	Alpha amylase catalytic
JYA99_RS19805	COG0420	3'-5' exonuclease activity
JYA99_RS19810	COG0419	ATPase involved in DNA repair
JYA99_RS19815	COG1940	carbohydrate kinase activity
JYA99_RS19830	COG4126	flavin adenine dinucleotide binding
JYA99_RS19840	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JYA99_RS19845	COG3416	Protein conserved in bacteria
JYA99_RS19855	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JYA99_RS19865	COG1785	Belongs to the alkaline phosphatase family
JYA99_RS19905	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
JYA99_RS19910	COG1335	isochorismatase
JYA99_RS19915	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JYA99_RS19920	COG0113	porphobilinogen synthase activity
JYA99_RS19925	COG1943	Transposase
JYA99_RS19935	COG2175	clavaminate synthase activity
JYA99_RS19940	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JYA99_RS19945	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JYA99_RS19950	COG4521	taurine ABC transporter
JYA99_RS19955	COG2040	homocysteine
JYA99_RS19960	COG0833	amino acid
JYA99_RS19975	COG4303	Ethanolamine ammonia lyase large subunit
JYA99_RS19980	COG4302	ethanolamine ammonia-lyase activity
JYA99_RS20020	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS20025	COG1126	abc transporter atp-binding protein
JYA99_RS20030	COG0765	amino acid transport
JYA99_RS20035	COG0765	amino acid transport
JYA99_RS20050	COG3188	usher protein
JYA99_RS20075	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
JYA99_RS20085	COG3639	organic phosphonate transmembrane transporter activity
JYA99_RS20105	COG0791	NLP P60 protein
JYA99_RS20160	COG0582	viral genome integration into host DNA
JYA99_RS20195	COG0765	amino acid transport
JYA99_RS20205	COG4221	oxidoreductase activity
JYA99_RS20220	COG0436	Aminotransferase
JYA99_RS20225	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
JYA99_RS20230	COG1984	allophanate hydrolase subunit 2
JYA99_RS20245	COG0697	spore germination
JYA99_RS20250	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JYA99_RS20255	COG0439	Biotin carboxylase
JYA99_RS20260	COG0511	ligase activity, forming carbon-carbon bonds
JYA99_RS20270	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JYA99_RS20275	COG0022	dehydrogenase e1 component
JYA99_RS20280	COG0508	dehydrogenase complex catalyzes the overall conversion of
JYA99_RS20285	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JYA99_RS20295	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JYA99_RS20310	COG0579	oxidoreductase
JYA99_RS20315	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS20320	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JYA99_RS20325	COG1113	amino acid transport
JYA99_RS20330	COG1802	Transcriptional regulator
JYA99_RS20350	COG2195	Cleaves the N-terminal amino acid of tripeptides
JYA99_RS20355	COG0454	-acetyltransferase
JYA99_RS20370	COG2991	Protein conserved in bacteria
JYA99_RS20385	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JYA99_RS20390	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JYA99_RS20405	COG3034	peptidoglycan biosynthetic process
JYA99_RS20410	COG0121	glutamine amidotransferase
JYA99_RS20420	COG1960	acyl-CoA dehydrogenase activity
JYA99_RS20425	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JYA99_RS20435	COG0583	DNA-binding transcription factor activity
JYA99_RS20445	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JYA99_RS20455	COG2226	methyltransferase
JYA99_RS20465	COG0741	lytic transglycosylase activity
JYA99_RS20465	COG1388	LysM domain
JYA99_RS20470	COG2226	methyltransferase
JYA99_RS20480	COG2814	Major facilitator Superfamily
JYA99_RS20485	COG0583	DNA-binding transcription factor activity
JYA99_RS20490	COG0656	L-ascorbic acid biosynthetic process
JYA99_RS20525	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JYA99_RS20535	COG2011	ABC-type metal ion transport system permease component
JYA99_RS20540	COG1464	Belongs to the NlpA lipoprotein family
JYA99_RS20550	COG1720	tRNA m6t6A37 methyltransferase activity
JYA99_RS20560	COG0791	NLP P60 protein
JYA99_RS20565	COG3015	lipoprotein NlpE involved in copper resistance
JYA99_RS20570	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JYA99_RS20585	COG4568	rho-dependent transcription termination
JYA99_RS20595	COG0346	lactoylglutathione lyase activity
JYA99_RS20600	COG1982	Orn Lys Arg decarboxylase major
JYA99_RS20640	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
JYA99_RS20650	COG0750	zinc metalloprotease
JYA99_RS20655	COG0575	Belongs to the CDS family
JYA99_RS20665	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JYA99_RS20690	COG0024	Methionine aminopeptidase
JYA99_RS20695	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JYA99_RS20710	COG3835	regulator
JYA99_RS20715	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JYA99_RS20735	COG2860	membrane
JYA99_RS20755	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS20760	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JYA99_RS20765	COG1120	ATPase activity
JYA99_RS20770	COG4774	siderophore transport
JYA99_RS20775	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JYA99_RS20865	COG1643	Atp-dependent helicase
JYA99_RS20870	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JYA99_RS20890	COG0617	tRNA 3'-terminal CCA addition
JYA99_RS20895	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JYA99_RS20915	COG0726	polysaccharide deacetylase
JYA99_RS20920	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS20925	COG0842	Transport permease protein
JYA99_RS20930	COG1131	(ABC) transporter
JYA99_RS20935	COG0288	reversible hydration of carbon dioxide
JYA99_RS20950	COG4993	Dehydrogenase
JYA99_RS20955	COG2132	Multicopper oxidase
JYA99_RS21015	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JYA99_RS21020	COG0508	dehydrogenase complex catalyzes the overall conversion of
JYA99_RS21025	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JYA99_RS21030	COG2186	Transcriptional regulator
JYA99_RS21035	COG1113	amino acid transport
JYA99_RS21040	COG2211	Major facilitator Superfamily
JYA99_RS21045	COG3940	Belongs to the glycosyl hydrolase 43 family
JYA99_RS21050	COG3725	Membrane protein required for beta-lactamase induction
JYA99_RS21055	COG3023	N-Acetylmuramoyl-L-alanine amidase
JYA99_RS21065	COG4969	Belongs to the N-Me-Phe pilin family
JYA99_RS21070	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JYA99_RS21075	COG1459	type II secretion system
JYA99_RS21100	COG0494	nUDIX hydrolase
JYA99_RS21120	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JYA99_RS21125	COG0849	cell division
JYA99_RS21150	COG0772	Belongs to the SEDS family
JYA99_RS21165	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JYA99_RS21170	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JYA99_RS21175	COG0768	penicillin binding
JYA99_RS21195	COG1609	Transcriptional regulator
JYA99_RS21205	COG0028	Belongs to the TPP enzyme family
JYA99_RS21250	COG0738	Major facilitator superfamily
JYA99_RS21260	COG0583	DNA-binding transcription factor activity
JYA99_RS21265	COG2271	Major facilitator Superfamily
JYA99_RS21270	COG2814	Major facilitator Superfamily
JYA99_RS21290	COG1178	ABC-type Fe3 transport system permease component
JYA99_RS21300	COG0586	Pfam SNARE associated Golgi protein
JYA99_RS21320	COG0235	Class ii aldolase
JYA99_RS21325	COG0417	DNA replication proofreading
JYA99_RS21335	COG0564	pseudouridine synthase activity
JYA99_RS21345	COG3493	citrate carrier protein
JYA99_RS21360	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JYA99_RS21365	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JYA99_RS21375	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JYA99_RS21420	COG0505	Belongs to the CarA family
JYA99_RS21485	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JYA99_RS21510	COG1047	Peptidyl-prolyl cis-trans
JYA99_RS21525	COG0196	riboflavin kinase activity
JYA99_RS21535	COG0583	DNA-binding transcription factor activity
JYA99_RS21560	COG4735	regulation of single-species biofilm formation
JYA99_RS21565	COG1584	GPR1 FUN34 yaaH family protein
JYA99_RS21570	COG0477	Major facilitator Superfamily
JYA99_RS21575	COG0521	Mo-molybdopterin cofactor biosynthetic process
JYA99_RS21580	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JYA99_RS21585	COG1115	amino acid carrier protein
JYA99_RS21600	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JYA99_RS21610	COG0460	homoserine dehydrogenase
JYA99_RS21610	COG0527	aspartate kinase activity
JYA99_RS21620	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
JYA99_RS21630	COG0745	RESPONSE REGULATOR receiver
JYA99_RS21635	COG4452	Inner membrane protein CreD
JYA99_RS21640	COG2205	protein histidine kinase activity
JYA99_RS21645	COG0745	RESPONSE REGULATOR receiver
JYA99_RS21650	COG3045	CreA protein
JYA99_RS21655	COG3708	Transcriptional regulator
JYA99_RS21655	COG2207	Transcriptional regulator
JYA99_RS21675	COG0741	lytic transglycosylase activity
JYA99_RS21680	COG0488	(ABC) transporter
JYA99_RS21690	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JYA99_RS21695	COG0560	Phosphoserine phosphatase
JYA99_RS21700	COG3726	membrane protein affecting hemolysin expression
JYA99_RS21730	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JYA99_RS21735	COG0084	hydrolase, TatD family'
JYA99_RS21740	COG4667	esterase of the alpha-beta hydrolase superfamily
JYA99_RS21750	COG2823	Periplasmic or secreted lipoprotein
JYA99_RS21760	COG1011	Hydrolase
JYA99_RS21765	COG0456	acetyltransferase
JYA99_RS21770	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
JYA99_RS21805	COG3706	GGDEF domain
JYA99_RS21810	COG4114	ferric iron reductase
JYA99_RS21815	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS21815	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS21820	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JYA99_RS21825	COG2197	response regulator
JYA99_RS21830	COG2197	response regulator
JYA99_RS21845	COG2966	Psort location CytoplasmicMembrane, score
JYA99_RS21860	COG1484	DNA-dependent DNA replication
JYA99_RS21875	COG5464	transposase or invertase
JYA99_RS21885	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JYA99_RS21890	COG3716	PTS system mannose fructose sorbose family IID component
JYA99_RS21895	COG3715	PTS system
JYA99_RS21910	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JYA99_RS21910	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JYA99_RS21915	COG0456	acetyltransferase
JYA99_RS21915	COG1214	PFAM Peptidase M22, glycoprotease
JYA99_RS21925	COG1737	Transcriptional regulator
JYA99_RS21930	COG0800	Aldolase
JYA99_RS21935	COG3734	2-keto-3-deoxy-galactonokinase
JYA99_RS21950	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
JYA99_RS21975	COG1846	Transcriptional regulator
JYA99_RS21985	COG0179	Fumarylacetoacetate (FAA) hydrolase
JYA99_RS21995	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS22000	COG3384	dioxygenase
JYA99_RS22010	COG3971	2-oxopent-4-enoate hydratase activity
JYA99_RS22030	COG2368	4-hydroxyphenylacetate
JYA99_RS22035	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JYA99_RS22050	COG1966	Carbon starvation protein
JYA99_RS22055	COG2879	small protein
JYA99_RS22060	COG0523	cobalamin synthesis protein
JYA99_RS22070	COG1012	belongs to the aldehyde dehydrogenase family
JYA99_RS22075	COG5464	transposase or invertase
JYA99_RS22080	COG1917	Cupin 2, conserved barrel domain protein
JYA99_RS22080	COG2207	Transcriptional regulator
JYA99_RS22090	COG2733	membrane
JYA99_RS22105	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
JYA99_RS22110	COG1924	4 iron, 4 sulfur cluster binding
JYA99_RS22125	COG1566	PFAM secretion protein HlyD family protein
JYA99_RS22135	COG5457	Domain of unknown function (DUF1127)
JYA99_RS22140	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYA99_RS22150	COG0583	DNA-binding transcription factor activity
JYA99_RS22155	COG2249	NAD(P)H dehydrogenase (quinone) activity
JYA99_RS22165	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS22170	COG1129	ABC transporter
JYA99_RS22175	COG1879	ABC-type sugar transport system periplasmic component
JYA99_RS22185	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS22190	COG1129	ABC transporter
JYA99_RS22190	COG0842	Transport permease protein
JYA99_RS22195	COG0842	Transport permease protein
JYA99_RS22225	COG2850	peptidyl-arginine hydroxylation
JYA99_RS22240	COG5002	protein histidine kinase activity
JYA99_RS22245	COG0745	RESPONSE REGULATOR receiver
JYA99_RS22250	COG1538	Outer membrane efflux protein
JYA99_RS22255	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS22260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS22265	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JYA99_RS22275	COG3040	lipid binding
JYA99_RS22280	COG0789	Transcriptional regulator
JYA99_RS22290	COG0300	oxidoreductase activity
JYA99_RS22305	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JYA99_RS22325	COG3272	Protein of unknown function (DUF1722)
JYA99_RS22330	COG4580	involved in the transport of maltose and maltodextrins
JYA99_RS22335	COG2115	Belongs to the xylose isomerase family
JYA99_RS22340	COG2211	Major facilitator Superfamily
JYA99_RS22345	COG3507	Belongs to the glycosyl hydrolase 43 family
JYA99_RS22385	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JYA99_RS22385	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
JYA99_RS22390	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
JYA99_RS22405	COG1401	restriction endodeoxyribonuclease activity
JYA99_RS22440	COG0288	reversible hydration of carbon dioxide
JYA99_RS22445	COG0659	secondary active sulfate transmembrane transporter activity
JYA99_RS22450	COG1064	alcohol dehydrogenase
JYA99_RS22455	COG1175	transmembrane transport
JYA99_RS22460	COG0395	ABC-type sugar transport system, permease component
JYA99_RS22465	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JYA99_RS22470	COG3842	ATPase activity
JYA99_RS22485	COG1082	Xylose isomerase domain protein TIM barrel
JYA99_RS22495	COG3962	Belongs to the TPP enzyme family
JYA99_RS22500	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JYA99_RS22505	COG0837	glucose binding
JYA99_RS22505	COG1737	Transcriptional regulator
JYA99_RS22510	COG3718	enzyme involved in inositol metabolism
JYA99_RS22525	COG0433	COG0433 Predicted ATPase
JYA99_RS22530	COG0795	lipopolysaccharide-transporting ATPase activity
JYA99_RS22535	COG0795	lipopolysaccharide-transporting ATPase activity
JYA99_RS22545	COG2927	DNA polymerase III (CHI subunit)
JYA99_RS22550	COG0525	valine-tRNA ligase activity
JYA99_RS22575	COG2731	YhcH YjgK YiaL family protein
JYA99_RS22610	COG1263	PTS System
JYA99_RS22610	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYA99_RS22615	COG0366	Alpha amylase catalytic
JYA99_RS22620	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYA99_RS22625	COG1486	melibiose metabolic process
JYA99_RS22650	COG0602	queuosine metabolic process
JYA99_RS22655	COG2026	Addiction module toxin, RelE StbE family
JYA99_RS22660	COG3077	Addiction module antitoxin, RelB DinJ family
JYA99_RS22665	COG3711	transcriptional antiterminator
JYA99_RS22665	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYA99_RS22670	COG2706	6-phosphogluconolactonase activity
JYA99_RS22685	COG3964	amidohydrolase
JYA99_RS22720	COG0312	modulator of DNA gyrase
JYA99_RS22745	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JYA99_RS22755	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS22760	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS22765	COG1129	ABC transporter
JYA99_RS22770	COG1879	ABC-type sugar transport system periplasmic component
JYA99_RS22785	COG2105	PFAM AIG2 family protein
JYA99_RS22790	COG2911	Protein conserved in bacteria
JYA99_RS22795	COG0729	surface antigen
JYA99_RS22805	COG1253	flavin adenine dinucleotide binding
JYA99_RS22820	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JYA99_RS22835	COG1733	regulation of RNA biosynthetic process
JYA99_RS22840	COG0702	epimerase
JYA99_RS22850	COG0697	spore germination
JYA99_RS22860	COG1113	amino acid transport
JYA99_RS22865	COG0545	Peptidyl-prolyl cis-trans isomerase
JYA99_RS22870	COG3061	Opacity-associated protein A
JYA99_RS22880	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JYA99_RS22885	COG2965	DNA replication, synthesis of RNA primer
JYA99_RS22945	COG1073	alpha beta
JYA99_RS22950	COG3650	response to hydrogen peroxide
JYA99_RS22960	COG1960	acyl-CoA dehydrogenase activity
JYA99_RS22965	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JYA99_RS22970	COG0557	exoribonuclease II activity
JYA99_RS22985	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
JYA99_RS22995	COG0330	HflC and HflK could
JYA99_RS23000	COG0330	HflC and HflK could
JYA99_RS23005	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JYA99_RS23025	COG0860	N-Acetylmuramoyl-L-alanine amidase
JYA99_RS23030	COG0802	atpase or kinase
JYA99_RS23035	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JYA99_RS23035	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JYA99_RS23040	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JYA99_RS23060	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYA99_RS23080	COG1511	domain protein
JYA99_RS23080	COG3264	Mechanosensitive ion channel
JYA99_RS23095	COG1053	succinate dehydrogenase
JYA99_RS23100	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JYA99_RS23120	COG2076	Multidrug Resistance protein
JYA99_RS23125	COG5510	response to toxic substance
JYA99_RS23140	COG1509	lysine 2,3-aminomutase activity
JYA99_RS23205	COG0531	amino acid
JYA99_RS23210	COG3030	protein affecting phage T7 exclusion by the F plasmid
JYA99_RS23215	COG1027	Aspartate ammonia-lyase
JYA99_RS23220	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JYA99_RS23235	COG1309	transcriptional regulator
JYA99_RS23280	COG0457	Tetratricopeptide repeat
JYA99_RS23285	COG1649	PFAM Uncharacterised BCR, COG1649
JYA99_RS23285	COG0726	polysaccharide deacetylase
JYA99_RS23290	COG1215	transferase activity, transferring glycosyl groups
JYA99_RS23305	COG0861	Integral membrane protein TerC family
JYA99_RS23345	COG1486	melibiose metabolic process
JYA99_RS23350	COG2169	Transcriptional regulator
JYA99_RS23360	COG2824	Alkylphosphonate utilization operon protein PhnA
JYA99_RS23365	COG2764	glyoxalase bleomycin resistance protein dioxygenase
JYA99_RS23370	COG2188	Transcriptional regulator
JYA99_RS23375	COG3624	Phosphonate C-P lyase system protein PhnG
JYA99_RS23380	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
JYA99_RS23385	COG3626	phosphonate metabolism
JYA99_RS23390	COG3627	carbon phosphorus lyase activity
JYA99_RS23395	COG4107	phosphonate C-P lyase system protein PhnK
JYA99_RS23400	COG4778	phosphonate C-P lyase system protein PhnL
JYA99_RS23405	COG3454	Phosphonate metabolism
JYA99_RS23415	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JYA99_RS23425	COG0784	Response regulator, receiver
JYA99_RS23425	COG4191	Histidine kinase
JYA99_RS23430	COG1129	ABC transporter
JYA99_RS23435	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS23470	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JYA99_RS23475	COG1301	dicarboxylic acid transport
JYA99_RS23485	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JYA99_RS23490	COG3162	membrane
JYA99_RS23520	COG3539	Fimbrial protein
JYA99_RS23525	COG1346	cytolysis
JYA99_RS23530	COG1380	Effector of murein hydrolase LrgA
JYA99_RS23535	COG0583	DNA-binding transcription factor activity
JYA99_RS23540	COG0025	NhaP-type Na H and K H
JYA99_RS23545	COG2252	PERMEase
JYA99_RS23550	COG0625	glutathione transferase activity
JYA99_RS23555	COG0789	Transcriptional regulator
JYA99_RS23565	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JYA99_RS23595	COG1234	tRNA 3'-trailer cleavage
JYA99_RS23600	COG1609	Transcriptional regulator
JYA99_RS23605	COG0483	inositol monophosphate 1-phosphatase activity
JYA99_RS23615	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JYA99_RS23635	COG4771	TonB-dependent receptor
JYA99_RS23640	COG0741	lytic transglycosylase activity
JYA99_RS23655	COG2315	Protein conserved in bacteria
JYA99_RS23660	COG0432	Pfam Uncharacterised protein family UPF0047
JYA99_RS23675	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JYA99_RS23680	COG0305	Participates in initiation and elongation during chromosome replication
JYA99_RS23695	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JYA99_RS23705	COG0735	belongs to the Fur family
JYA99_RS23710	COG3237	CsbD-like
JYA99_RS23720	COG0534	Mate efflux family protein
JYA99_RS23730	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JYA99_RS23800	COG0251	oxidation-reduction process
JYA99_RS23810	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JYA99_RS23820	COG0527	aspartate kinase activity
JYA99_RS23875	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JYA99_RS23905	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JYA99_RS23915	COG0456	acetyltransferase
JYA99_RS23945	COG0151	Belongs to the GarS family
JYA99_RS23955	COG4191	Histidine kinase
JYA99_RS23960	COG3678	ATP-independent chaperone mediated protein folding
JYA99_RS23995	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
JYA99_RS24010	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JYA99_RS24015	COG2104	thiamine diphosphate biosynthetic process
JYA99_RS24030	COG3706	GGDEF domain
JYA99_RS24040	COG1447	Phosphotransferase system cellobiose-specific component IIA
JYA99_RS24045	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JYA99_RS24080	COG0250	Participates in transcription elongation, termination and antitermination
JYA99_RS24125	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JYA99_RS24155	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
JYA99_RS24165	COG1739	Uncharacterized protein family UPF0029
JYA99_RS24205	COG0805	protein transport
JYA99_RS24225	COG3165	ubiquinone biosynthetic process from chorismate
JYA99_RS24255	COG0583	DNA-binding transcription factor activity
JYA99_RS24260	COG0697	spore germination
JYA99_RS24265	COG0561	phosphatase activity
JYA99_RS24270	COG2267	carboxylic ester hydrolase activity
JYA99_RS24275	COG1280	lysine exporter protein (LysE YggA)
JYA99_RS24285	COG1280	lysine exporter protein (LysE YggA)
JYA99_RS24315	COG0210	DNA helicase
JYA99_RS24320	COG1011	Hydrolase
JYA99_RS24350	COG3072	Adenylate cyclase
JYA99_RS24365	COG2959	enzyme of heme biosynthesis
JYA99_RS24370	COG3071	HemY protein
JYA99_RS24415	COG2244	polysaccharide biosynthetic process
JYA99_RS24420	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JYA99_RS24425	COG0456	acetyltransferase
JYA99_RS24430	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JYA99_RS24435	COG1088	dTDP-glucose 4,6-dehydratase activity
JYA99_RS24440	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
JYA99_RS24445	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JYA99_RS24455	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JYA99_RS24460	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JYA99_RS24465	COG3118	belongs to the thioredoxin family
JYA99_RS24490	COG1811	Na channel or pump
JYA99_RS24500	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JYA99_RS24505	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JYA99_RS24515	COG0583	DNA-binding transcription factor activity
JYA99_RS24520	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JYA99_RS24535	COG3978	acetolactate synthase activity
JYA99_RS24560	COG3085	chromosome segregation
JYA99_RS24635	COG0583	DNA-binding transcription factor activity
JYA99_RS24650	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JYA99_RS24665	COG3443	Belongs to the bacterial solute-binding protein 9 family
JYA99_RS24670	COG2207	Transcriptional regulator
JYA99_RS24680	COG0371	Dehydrogenase
JYA99_RS24685	COG0697	spore germination
JYA99_RS24695	COG0583	DNA-binding transcription factor activity
JYA99_RS24705	COG0737	Belongs to the 5'-nucleotidase family
JYA99_RS24715	COG0527	aspartate kinase activity
JYA99_RS24715	COG0460	homoserine dehydrogenase
JYA99_RS24720	COG0626	cystathionine gamma-synthase activity
JYA99_RS24735	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JYA99_RS24740	COG1609	Transcriptional regulator
JYA99_RS24745	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JYA99_RS24760	COG1575	Belongs to the MenA family. Type 1 subfamily
JYA99_RS24780	COG3678	ATP-independent chaperone mediated protein folding
JYA99_RS24785	COG0745	RESPONSE REGULATOR receiver
JYA99_RS24790	COG2205	protein histidine kinase activity
JYA99_RS24795	COG2258	MOSC domain
JYA99_RS24800	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JYA99_RS24840	COG1129	ABC transporter
JYA99_RS24845	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS24850	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS24855	COG1454	alcohol dehydrogenase
JYA99_RS24865	COG2211	Major facilitator Superfamily
JYA99_RS24925	COG0205	6-phosphofructokinase activity
JYA99_RS24945	COG0437	4 iron, 4 sulfur cluster binding
JYA99_RS24950	COG2864	formate dehydrogenase
JYA99_RS24965	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JYA99_RS24975	COG0456	acetyltransferase
JYA99_RS24990	COG1011	Hydrolase
JYA99_RS25005	COG3852	Histidine kinase
JYA99_RS25020	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JYA99_RS25040	COG0204	Acyl-transferase
JYA99_RS25050	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JYA99_RS25055	COG3084	Protein conserved in bacteria
JYA99_RS25065	COG1763	Mo-molybdopterin cofactor biosynthetic process
JYA99_RS25085	COG2186	Transcriptional regulator
JYA99_RS25090	COG0477	Major facilitator Superfamily
JYA99_RS25095	COG1609	Transcriptional regulator
JYA99_RS25100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JYA99_RS25110	COG1172	Belongs to the binding-protein-dependent transport system permease family
JYA99_RS25115	COG1129	ABC transporter
JYA99_RS25145	COG1522	sequence-specific DNA binding
JYA99_RS25150	COG0716	FMN binding
JYA99_RS25165	COG3312	ion transport
JYA99_RS25215	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JYA99_RS25220	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JYA99_RS25225	COG0573	inorganic phosphate transmembrane transporter activity
JYA99_RS25230	COG0581	inorganic phosphate transmembrane transporter activity
JYA99_RS25235	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JYA99_RS25240	COG0704	Plays a role in the regulation of phosphate uptake
JYA99_RS25250	COG2382	esterase
JYA99_RS25255	COG0363	glucosamine-6-phosphate deaminase activity
JYA99_RS25260	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JYA99_RS25265	COG2252	PERMEase
JYA99_RS25270	COG0431	NADPH-dependent FMN reductase
JYA99_RS25275	COG2091	lysine biosynthetic process via aminoadipic acid
JYA99_RS25305	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JYA99_RS25330	COG0500	methyltransferase
JYA99_RS25365	COG2382	esterase
JYA99_RS25385	COG1475	DNA binding
JYA99_RS25390	COG3969	phosphoadenosine phosphosulfate
JYA99_RS25405	COG1595	DNA-templated transcription, initiation
JYA99_RS25415	COG4772	TonB-dependent receptor
JYA99_RS25420	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JYA99_RS25435	COG5642	Protein of unknown function (DUF2384)
JYA99_RS25440	COG5654	RES domain protein
JYA99_RS25460	COG2916	Histone family protein nucleoid-structuring protein H-NS
JYA99_RS25465	COG0656	L-ascorbic acid biosynthetic process
JYA99_RS25490	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYA99_RS25535	COG0735	belongs to the Fur family
JYA99_RS25540	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JYA99_RS25545	COG0523	cobalamin synthesis protein
JYA99_RS25570	COG0523	cobalamin synthesis protein
JYA99_RS25610	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JYA99_RS25660	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JYA99_RS25675	COG0789	Transcriptional regulator
JYA99_RS25680	COG2205	protein histidine kinase activity
JYA99_RS25685	COG0745	RESPONSE REGULATOR receiver
JYA99_RS25690	COG1276	copper resistance
JYA99_RS25695	COG2372	response to copper ion
JYA99_RS25700	COG3667	copper resistance
JYA99_RS25705	COG2132	Multicopper oxidase
JYA99_RS25715	COG0739	heme binding
JYA99_RS25745	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYA99_RS25815	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
JYA99_RS25825	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYA99_RS25845	COG0523	cobalamin synthesis protein
JYA99_RS26015	COG1522	sequence-specific DNA binding
JYA99_RS26030	COG0604	alcohol dehydrogenase
JYA99_RS26030	COG1028	Short-chain dehydrogenase reductase Sdr
JYA99_RS26030	COG3321	synthase
JYA99_RS26120	COG1358	cellular component organization or biogenesis
JYA99_RS26140	COG4245	von Willebrand factor, type A
JYA99_RS26150	COG4245	von Willebrand factor, type A
JYA99_RS26155	COG4245	von Willebrand factor, type A
JYA99_RS26305	COG3436	PFAM IS66 Orf2 family protein
JYA99_RS26310	COG4372	Transposase
JYA99_RS26410	COG4372	Transposase
JYA99_RS26415	COG3436	PFAM IS66 Orf2 family protein
JYA99_RS26505	COG1192	Involved in chromosome partitioning
JYA99_RS26655	COG0840	transmembrane signaling receptor activity
JYA99_RS26770	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JYA99_RS26800	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JYA99_RS26835	COG1324	tolerance protein
JYA99_RS26840	COG0673	inositol 2-dehydrogenase activity
JYA99_RS26900	COG0697	spore germination
JYA99_RS26970	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
JYA99_RS27170	COG3328	transposase activity
JYA99_RS27175	COG5499	transcription regulator containing HTH domain
JYA99_RS27245	COG1475	DNA binding
JYA99_RS27435	COG4372	Transposase
JYA99_RS27440	COG3436	PFAM IS66 Orf2 family protein