locus-tag	class	description
D0887_RS00015	COG1393	Belongs to the ArsC family
D0887_RS00020	COG4783	chaperone-mediated protein folding
D0887_RS00025	COG0628	permease
D0887_RS00030	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
D0887_RS00035	COG2716	regulation of RNA biosynthetic process
D0887_RS00045	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
D0887_RS00055	COG2321	neutral zinc metallopeptidase
D0887_RS00060	COG1444	tRNA N-acetyltransferase activity
D0887_RS00065	COG0400	carboxylic ester hydrolase activity
D0887_RS00080	COG1393	Belongs to the ArsC family
D0887_RS00090	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0887_RS00100	COG0493	'glutamate synthase
D0887_RS00100	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0887_RS00110	COG5342	invasion associated locus B
D0887_RS00115	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D0887_RS00120	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D0887_RS00130	COG4810	utilization protein
D0887_RS00220	COG0860	N-Acetylmuramoyl-L-alanine amidase
D0887_RS00240	COG2837	iron assimilation
D0887_RS00250	COG4150	thiosulfate binding
D0887_RS00255	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
D0887_RS00260	COG4208	sulfate ABC transporter
D0887_RS00265	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
D0887_RS00275	COG4319	ketosteroid isomerase
D0887_RS00310	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D0887_RS00330	COG3530	Putative quorum-sensing-regulated virulence factor
D0887_RS00335	COG0385	Bile acid
D0887_RS00340	COG0583	DNA-binding transcription factor activity
D0887_RS00385	COG3415	Transposase
D0887_RS00390	COG3415	Transposase
D0887_RS00405	COG2200	EAL domain
D0887_RS00405	COG2199	diguanylate cyclase activity
D0887_RS00410	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0887_RS00425	COG0667	Aldo Keto reductase
D0887_RS00430	COG3961	Belongs to the TPP enzyme family
D0887_RS00445	COG3279	Response regulator of the LytR AlgR family
D0887_RS00450	COG3275	phosphorelay sensor kinase activity
D0887_RS00460	COG0436	Aminotransferase
D0887_RS00470	COG2807	transmembrane transport
D0887_RS00475	COG0590	tRNA wobble adenosine to inosine editing
D0887_RS00480	COG0583	DNA-binding transcription factor activity
D0887_RS00500	COG0582	viral genome integration into host DNA
D0887_RS00575	COG1061	Type III restriction enzyme res subunit
D0887_RS00610	COG3179	chitinase
D0887_RS00645	COG1802	Transcriptional regulator
D0887_RS00645	COG4626	Terminase
D0887_RS00775	COG2116	formate transmembrane transporter activity
D0887_RS00780	COG2853	Lipoprotein
D0887_RS00795	COG3691	Protein conserved in bacteria
D0887_RS00810	COG2062	phosphohistidine phosphatase, SixA
D0887_RS00835	COG0730	response to heat
D0887_RS00840	COG3101	peptidyl-lysine hydroxylation
D0887_RS00855	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D0887_RS00875	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D0887_RS00885	COG0586	Pfam SNARE associated Golgi protein
D0887_RS00895	COG0285	dihydrofolate synthase activity
D0887_RS00900	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
D0887_RS00905	COG1286	toxin biosynthetic process
D0887_RS00910	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
D0887_RS00915	COG0163	prenyltransferase activity
D0887_RS00935	COG4160	amino acid transport
D0887_RS00940	COG4598	ABC transporter
D0887_RS00950	COG1090	epimerase
D0887_RS00955	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D0887_RS00960	COG0625	glutathione transferase activity
D0887_RS00965	COG0625	glutathione transferase activity
D0887_RS00970	COG0622	Phosphoesterase
D0887_RS00975	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
D0887_RS00980	COG0280	phosphate acetyltransferase
D0887_RS00980	COG0857	belongs to the CobB CobQ family
D0887_RS01000	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0887_RS01005	COG0490	domain, Protein
D0887_RS01005	COG0471	metal ion transport
D0887_RS01015	COG0436	Aminotransferase
D0887_RS01020	COG0583	DNA-binding transcription factor activity
D0887_RS01075	COG0839	Belongs to the complex I subunit 6 family
D0887_RS01085	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D0887_RS01090	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D0887_RS01105	COG2153	protein acetylation
D0887_RS01110	COG1169	isochorismate synthase
D0887_RS01135	COG0318	PFAM AMP-dependent synthetase and ligase
D0887_RS01145	COG5464	transposase or invertase
D0887_RS01160	COG1414	Transcriptional regulator
D0887_RS01170	COG2271	Major facilitator Superfamily
D0887_RS01180	COG0247	lactate metabolic process
D0887_RS01190	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D0887_RS01195	COG2271	Major facilitator Superfamily
D0887_RS01200	COG0584	glycerophosphoryl diester phosphodiesterase
D0887_RS01210	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0887_RS01240	COG0784	Response regulator, receiver
D0887_RS01240	COG2205	protein histidine kinase activity
D0887_RS01250	COG0642	Histidine kinase
D0887_RS01250	COG2198	Histidine kinase
D0887_RS01265	COG2169	Transcriptional regulator
D0887_RS01265	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D0887_RS01270	COG3145	DNA-N1-methyladenine dioxygenase activity
D0887_RS01275	COG4615	Cyclic peptide transporter
D0887_RS01280	COG2239	Acts as a magnesium transporter
D0887_RS01285	COG0659	secondary active sulfate transmembrane transporter activity
D0887_RS01300	COG0628	permease
D0887_RS01390	COG0582	viral genome integration into host DNA
D0887_RS01415	COG1349	DNA-binding transcription factor activity
D0887_RS01420	COG0494	nUDIX hydrolase
D0887_RS01440	COG1061	Type III restriction enzyme res subunit
D0887_RS01445	COG1187	pseudouridine synthase activity
D0887_RS01450	COG2814	Major facilitator Superfamily
D0887_RS01460	COG4172	Belongs to the ABC transporter superfamily
D0887_RS01465	COG4239	(ABC) transporter, permease
D0887_RS01470	COG4174	ABC transporter (Permease)
D0887_RS01475	COG4166	transmembrane transport
D0887_RS01480	COG2200	EAL domain
D0887_RS01485	COG0791	NLP P60 protein
D0887_RS01490	COG0671	phosphoesterase, PA-phosphatase related
D0887_RS01495	COG0523	cobalamin synthesis protein
D0887_RS01500	COG0246	Mannitol dehydrogenase
D0887_RS01505	COG1312	Catalyzes the dehydration of D-mannonate
D0887_RS01535	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS01535	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS01540	COG1105	Belongs to the carbohydrate kinase PfkB family
D0887_RS01545	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
D0887_RS01545	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0887_RS01545	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0887_RS01555	COG2855	membrane
D0887_RS01565	COG0583	DNA-binding transcription factor activity
D0887_RS01570	COG0833	amino acid
D0887_RS01580	COG4771	TonB-dependent receptor
D0887_RS01610	COG1129	ABC transporter
D0887_RS01620	COG2949	membrane
D0887_RS01630	COG1346	cytolysis
D0887_RS01640	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D0887_RS01660	COG2723	6-phospho-beta-galactosidase activity
D0887_RS01670	COG1538	Outer membrane efflux protein
D0887_RS01675	COG0586	Pfam SNARE associated Golgi protein
D0887_RS01685	COG1686	Belongs to the peptidase S11 family
D0887_RS01695	COG0277	FAD linked oxidase domain protein
D0887_RS01700	COG1472	Belongs to the glycosyl hydrolase 3 family
D0887_RS01705	COG1732	Glycine betaine
D0887_RS01710	COG1174	glycine betaine transport
D0887_RS01715	COG1125	glycine betaine transport
D0887_RS01720	COG1174	glycine betaine transport
D0887_RS01730	COG3275	phosphorelay sensor kinase activity
D0887_RS01740	COG4807	Protein conserved in bacteria
D0887_RS01760	COG5455	response to cobalt ion
D0887_RS01765	COG0583	DNA-binding transcription factor activity
D0887_RS01770	COG2252	PERMEase
D0887_RS01780	COG0583	DNA-binding transcription factor activity
D0887_RS01795	COG0351	phosphomethylpyrimidine kinase
D0887_RS01800	COG1830	Aldolase
D0887_RS01835	COG1070	Carbohydrate kinase
D0887_RS01845	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0887_RS01850	COG4948	Mandelate Racemase Muconate Lactonizing
D0887_RS01855	COG0747	negative chemotaxis
D0887_RS01860	COG0601	transmembrane transport
D0887_RS01865	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0887_RS01870	COG0444	Belongs to the ABC transporter superfamily
D0887_RS01875	COG4608	Belongs to the ABC transporter superfamily
D0887_RS01885	COG0826	peptidase U32
D0887_RS01890	COG0745	RESPONSE REGULATOR receiver
D0887_RS01895	COG2205	protein histidine kinase activity
D0887_RS01920	COG1301	dicarboxylic acid transport
D0887_RS01935	COG5002	protein histidine kinase activity
D0887_RS01940	COG0443	Heat shock 70 kDa protein
D0887_RS01950	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
D0887_RS01965	COG2982	Protein involved in outer membrane biogenesis
D0887_RS01970	COG1253	flavin adenine dinucleotide binding
D0887_RS02025	COG1216	Glycosyl transferase, family 2
D0887_RS02025	COG1442	glycosyl transferase family 8
D0887_RS02035	COG0438	transferase activity, transferring glycosyl groups
D0887_RS02065	COG1088	dTDP-glucose 4,6-dehydratase activity
D0887_RS02135	COG0438	transferase activity, transferring glycosyl groups
D0887_RS02140	COG1215	transferase activity, transferring glycosyl groups
D0887_RS02160	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
D0887_RS02190	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D0887_RS02195	COG0583	DNA-binding transcription factor activity
D0887_RS02205	COG0531	amino acid
D0887_RS02210	COG0640	Transcriptional regulator
D0887_RS02215	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
D0887_RS02220	COG2925	Exonuclease
D0887_RS02235	COG1289	transmembrane transporter activity
D0887_RS02255	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
D0887_RS02265	COG1942	4-Oxalocrotonate Tautomerase
D0887_RS02270	COG0583	DNA-binding transcription factor activity
D0887_RS02275	COG0095	Lipoate-protein ligase
D0887_RS02280	COG0477	Major facilitator Superfamily
D0887_RS02295	COG3300	MHYT domain
D0887_RS02295	COG5001	Diguanylate cyclase
D0887_RS02305	COG3615	Tellurite resistance protein tehB
D0887_RS02330	COG3706	GGDEF domain
D0887_RS02365	COG0758	DNA mediated transformation
D0887_RS02380	COG4227	nucleotidyltransferase activity
D0887_RS02430	COG3504	Conjugal transfer protein
D0887_RS02505	COG4771	TonB-dependent receptor
D0887_RS02510	COG1021	2,3-dihydroxybenzoate-AMP ligase
D0887_RS02530	COG2226	methyltransferase
D0887_RS02530	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D0887_RS02530	COG3433	isochorismatase activity
D0887_RS02545	COG1132	(ABC) transporter
D0887_RS02550	COG2814	Major facilitator Superfamily
D0887_RS02555	COG1169	isochorismate synthase
D0887_RS02560	COG0582	viral genome integration into host DNA
D0887_RS02580	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS02585	COG0735	belongs to the Fur family
D0887_RS02595	COG0523	cobalamin synthesis protein
D0887_RS02625	COG0523	cobalamin synthesis protein
D0887_RS02655	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0887_RS02665	COG0803	Belongs to the bacterial solute-binding protein 9 family
D0887_RS02670	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
D0887_RS02680	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
D0887_RS02710	COG0803	Belongs to the bacterial solute-binding protein 9 family
D0887_RS02715	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0887_RS02720	COG1121	(ABC) transporter
D0887_RS02730	COG0582	viral genome integration into host DNA
D0887_RS02740	COG0534	Mate efflux family protein
D0887_RS02750	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D0887_RS02770	COG0604	alcohol dehydrogenase
D0887_RS02775	COG1309	transcriptional regulator
D0887_RS02780	COG0025	NhaP-type Na H and K H
D0887_RS02830	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0887_RS02845	COG1418	mRNA catabolic process
D0887_RS02850	COG0270	DNA (cytosine-5-)-methyltransferase activity
D0887_RS02855	COG3727	T/G mismatch-specific endonuclease activity
D0887_RS02860	COG0697	spore germination
D0887_RS02865	COG2354	Protein conserved in bacteria
D0887_RS02895	COG0366	Alpha amylase catalytic
D0887_RS02900	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS02910	COG0765	amino acid transport
D0887_RS02915	COG1126	abc transporter atp-binding protein
D0887_RS02920	COG2197	response regulator
D0887_RS02930	COG2197	response regulator
D0887_RS03025	COG0305	Participates in initiation and elongation during chromosome replication
D0887_RS03190	COG3772	lysozyme
D0887_RS03210	COG3012	SEC-C Motif Domain Protein
D0887_RS03210	COG3318	Belongs to the UPF0149 family
D0887_RS03215	COG0814	amino acid
D0887_RS03225	COG1528	Iron-storage protein
D0887_RS03240	COG0477	Major facilitator Superfamily
D0887_RS03250	COG2211	Major facilitator Superfamily
D0887_RS03260	COG1528	Iron-storage protein
D0887_RS03270	COG1879	ABC-type sugar transport system periplasmic component
D0887_RS03280	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS03305	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
D0887_RS03315	COG3102	Protein conserved in bacteria
D0887_RS03335	COG3788	relative of glutathione S-transferase, MAPEG superfamily
D0887_RS03345	COG0582	viral genome integration into host DNA
D0887_RS03520	COG3772	lysozyme
D0887_RS03545	COG5410	chromosome segregation
D0887_RS03715	COG1335	isochorismatase
D0887_RS03725	COG0494	nUDIX hydrolase
D0887_RS03750	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0887_RS03760	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
D0887_RS03765	COG0739	heme binding
D0887_RS03770	COG1560	Kdo2-lipid A biosynthetic process
D0887_RS03780	COG1737	Transcriptional regulator
D0887_RS03795	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
D0887_RS03800	COG0129	dihydroxy-acid dehydratase activity
D0887_RS03805	COG0800	Aldolase
D0887_RS03815	COG3141	response to X-ray
D0887_RS03820	COG2979	Protein of unknown function (DUF533)
D0887_RS03825	COG1770	oligopeptidase
D0887_RS03830	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D0887_RS03840	COG2372	response to copper ion
D0887_RS03845	COG1276	copper resistance
D0887_RS03860	COG2990	Protein conserved in bacteria
D0887_RS03885	COG3008	intermembrane lipid transfer
D0887_RS03890	COG2995	paraquat-inducible protein a
D0887_RS03895	COG1956	GAF domain-containing protein
D0887_RS03915	COG2814	Major facilitator Superfamily
D0887_RS03925	COG1414	Transcriptional regulator
D0887_RS03965	COG0768	penicillin binding
D0887_RS03970	COG2226	methyltransferase
D0887_RS03985	COG3716	PTS system mannose fructose sorbose family IID component
D0887_RS03990	COG3715	PTS system
D0887_RS03995	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS03995	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0887_RS04000	COG1253	flavin adenine dinucleotide binding
D0887_RS04005	COG2200	EAL domain
D0887_RS04010	COG1760	l-serine dehydratase
D0887_RS04030	COG0251	oxidation-reduction process
D0887_RS04035	COG1199	ATP-dependent helicase activity
D0887_RS04040	COG1214	PFAM Peptidase M22, glycoprotease
D0887_RS04045	COG3065	identical protein binding
D0887_RS04055	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
D0887_RS04065	COG2894	cell division
D0887_RS04080	COG0179	Fumarylacetoacetate (FAA) hydrolase
D0887_RS04110	COG2719	SpoVR family
D0887_RS04130	COG1619	proteins homologs of microcin C7 resistance protein MccF
D0887_RS04140	COG4774	siderophore transport
D0887_RS04155	COG2308	Evidence 4 Homologs of previously reported genes of
D0887_RS04205	COG0583	DNA-binding transcription factor activity
D0887_RS04210	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D0887_RS04225	COG1882	Formate acetyltransferase
D0887_RS04255	COG0583	DNA-binding transcription factor activity
D0887_RS04285	COG0583	DNA-binding transcription factor activity
D0887_RS04300	COG3122	Protein conserved in bacteria
D0887_RS04325	COG2885	chlorophyll binding
D0887_RS04370	COG1262	PFAM Formylglycine-generating sulfatase enzyme
D0887_RS04450	COG0012	GTP binding
D0887_RS04470	COG0659	secondary active sulfate transmembrane transporter activity
D0887_RS04505	COG2890	protein-(glutamine-N5) methyltransferase activity
D0887_RS04525	COG0387	Pfam Sodium calcium exchanger
D0887_RS04530	COG4572	Cation transport regulator
D0887_RS04535	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
D0887_RS04545	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
D0887_RS04550	COG3707	response regulator
D0887_RS04555	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0887_RS04565	COG1116	anion transmembrane transporter activity
D0887_RS04570	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D0887_RS04570	COG2146	nitrite reductase [NAD(P)H] activity
D0887_RS04575	COG0243	molybdopterin cofactor binding
D0887_RS04580	COG4932	domain protein
D0887_RS04585	COG2197	response regulator
D0887_RS04590	COG3850	Histidine kinase
D0887_RS04595	COG2223	nitrite transmembrane transporter activity
D0887_RS04600	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
D0887_RS04605	COG1140	nitrate reductase beta subunit
D0887_RS04610	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
D0887_RS04615	COG2181	nitrate reductase activity
D0887_RS04625	COG1522	sequence-specific DNA binding
D0887_RS04660	COG0788	formyltetrahydrofolate deformylase activity
D0887_RS04670	COG1752	Esterase of the alpha-beta hydrolase superfamily
D0887_RS04675	COG0745	RESPONSE REGULATOR receiver
D0887_RS04680	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D0887_RS04685	COG2916	Histone family protein nucleoid-structuring protein H-NS
D0887_RS04690	COG1435	thymidine kinase activity
D0887_RS04695	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS04695	COG1454	alcohol dehydrogenase
D0887_RS04705	COG2095	MarC family integral membrane protein
D0887_RS04710	COG4166	transmembrane transport
D0887_RS04715	COG0601	transmembrane transport
D0887_RS04720	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0887_RS04725	COG0444	Belongs to the ABC transporter superfamily
D0887_RS04735	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D0887_RS04755	COG2353	YceI-like domain
D0887_RS04760	COG2350	Protein conserved in bacteria
D0887_RS04770	COG3001	Fructosamine kinase
D0887_RS04780	COG1105	Belongs to the carbohydrate kinase PfkB family
D0887_RS04785	COG3137	Salt-induced outer membrane protein
D0887_RS04825	COG0072	phenylalanine-tRNA ligase activity
D0887_RS04825	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D0887_RS04845	COG0583	DNA-binding transcription factor activity
D0887_RS04865	COG0386	Belongs to the glutathione peroxidase family
D0887_RS04875	COG0791	NLP P60 protein
D0887_RS04885	COG4256	Hemin uptake protein
D0887_RS04890	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0887_RS04900	COG0574	Belongs to the PEP-utilizing enzyme family
D0887_RS04900	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D0887_RS04910	COG0628	permease
D0887_RS04915	COG0247	lactate metabolic process
D0887_RS04915	COG0277	FAD linked oxidase domain protein
D0887_RS04920	COG2050	protein possibly involved in aromatic compounds catabolism
D0887_RS04925	COG2261	transglycosylase associated protein
D0887_RS04955	COG1120	ATPase activity
D0887_RS04960	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS04970	COG0583	DNA-binding transcription factor activity
D0887_RS04995	COG1304	FMN binding
D0887_RS05000	COG1309	transcriptional regulator
D0887_RS05015	COG0316	Belongs to the HesB IscA family
D0887_RS05020	COG0719	Fe-S assembly protein
D0887_RS05025	COG0396	ATPase activity
D0887_RS05030	COG0719	Fe-S assembly protein
D0887_RS05045	COG1376	ErfK ybiS ycfS ynhG family protein
D0887_RS05070	COG1309	transcriptional regulator
D0887_RS05075	COG3185	4-Hydroxyphenylpyruvate dioxygenase
D0887_RS05075	COG1082	Xylose isomerase domain protein TIM barrel
D0887_RS05080	COG2271	Major facilitator Superfamily
D0887_RS05085	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
D0887_RS05095	COG1120	ATPase activity
D0887_RS05100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS05105	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D0887_RS05110	COG1414	Transcriptional regulator
D0887_RS05145	COG2814	Major facilitator Superfamily
D0887_RS05165	COG0583	DNA-binding transcription factor activity
D0887_RS05170	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0887_RS05190	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0887_RS05195	COG1116	anion transmembrane transporter activity
D0887_RS05200	COG4774	siderophore transport
D0887_RS05205	COG1120	ATPase activity
D0887_RS05210	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS05215	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS05235	COG0765	amino acid transport
D0887_RS05240	COG1126	abc transporter atp-binding protein
D0887_RS05270	COG1473	amidohydrolase
D0887_RS05275	COG3383	formate dehydrogenase (NAD+) activity
D0887_RS05280	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
D0887_RS05295	COG1175	transmembrane transport
D0887_RS05325	COG4133	protoheme IX ABC transporter activity
D0887_RS05330	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D0887_RS05335	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D0887_RS05350	COG1138	Cytochrome C-type biogenesis protein
D0887_RS05355	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D0887_RS05360	COG4235	cytochrome complex assembly
D0887_RS05360	COG3088	subunit of a heme lyase
D0887_RS05385	COG2207	Transcriptional regulator
D0887_RS05390	COG0656	L-ascorbic acid biosynthetic process
D0887_RS05430	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS05435	COG2610	gluconate transmembrane transporter activity
D0887_RS05440	COG1250	3-hydroxyacyl-CoA dehydrogenase
D0887_RS05450	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
D0887_RS05460	COG0583	DNA-binding transcription factor activity
D0887_RS05485	COG0277	FAD linked oxidase domain protein
D0887_RS05490	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0887_RS05515	COG0402	S-adenosylhomocysteine deaminase activity
D0887_RS05575	COG2200	EAL domain
D0887_RS05590	COG2205	protein histidine kinase activity
D0887_RS05595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS05625	COG2814	Major facilitator Superfamily
D0887_RS05630	COG1082	Xylose isomerase domain protein TIM barrel
D0887_RS05640	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0887_RS05670	COG4608	Belongs to the ABC transporter superfamily
D0887_RS05675	COG0444	Belongs to the ABC transporter superfamily
D0887_RS05700	COG0346	lactoylglutathione lyase activity
D0887_RS05705	COG1349	DNA-binding transcription factor activity
D0887_RS05735	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
D0887_RS05795	COG0307	riboflavin synthase, alpha
D0887_RS05800	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
D0887_RS05805	COG2814	Major facilitator Superfamily
D0887_RS05810	COG0583	DNA-binding transcription factor activity
D0887_RS05825	COG2814	Major facilitator Superfamily
D0887_RS05840	COG0791	NLP P60 protein
D0887_RS05845	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
D0887_RS05855	COG0346	lactoylglutathione lyase activity
D0887_RS05860	COG1902	pentaerythritol trinitrate reductase activity
D0887_RS05865	COG1309	transcriptional regulator
D0887_RS05870	COG3313	Fe-S protein
D0887_RS05875	COG4989	oxidoreductase activity
D0887_RS05880	COG2032	superoxide dismutase activity
D0887_RS05885	COG1289	transmembrane transporter activity
D0887_RS05890	COG1566	PFAM secretion protein HlyD family protein
D0887_RS05905	COG3706	GGDEF domain
D0887_RS05920	COG3895	Periplasmic Protein
D0887_RS05935	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
D0887_RS05940	COG0625	glutathione transferase activity
D0887_RS05955	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
D0887_RS05965	COG4659	FMN binding
D0887_RS06000	COG2723	6-phospho-beta-galactosidase activity
D0887_RS06010	COG0673	inositol 2-dehydrogenase activity
D0887_RS06020	COG2814	Major facilitator Superfamily
D0887_RS06040	COG3038	cytochrome b561
D0887_RS06060	COG0583	DNA-binding transcription factor activity
D0887_RS06065	COG3485	protocatechuate 3,4-dioxygenase
D0887_RS06070	COG3485	protocatechuate 3,4-dioxygenase
D0887_RS06075	COG5383	Protein conserved in bacteria
D0887_RS06080	COG2272	Belongs to the type-B carboxylesterase lipase family
D0887_RS06095	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0887_RS06100	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D0887_RS06105	COG1275	C4-dicarboxylate transporter malic acid transport protein
D0887_RS06110	COG0500	methyltransferase
D0887_RS06125	COG3708	Transcriptional regulator
D0887_RS06125	COG2207	Transcriptional regulator
D0887_RS06130	COG3135	benzoate transporter
D0887_RS06135	COG1396	sequence-specific DNA binding
D0887_RS06145	COG0826	peptidase U32
D0887_RS06165	COG1294	oxidase, subunit
D0887_RS06170	COG1271	oxidase subunit
D0887_RS06175	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0887_RS06180	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D0887_RS06185	COG3842	ATPase activity
D0887_RS06190	COG1176	ABC-type spermidine putrescine transport system, permease component I
D0887_RS06195	COG1177	transmembrane transport
D0887_RS06200	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS06230	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS06235	COG0747	negative chemotaxis
D0887_RS06245	COG3238	Protein conserved in bacteria
D0887_RS06250	COG1247	-acetyltransferase
D0887_RS06260	COG2130	NADP-dependent
D0887_RS06275	COG3691	Protein conserved in bacteria
D0887_RS06280	COG1228	amidohydrolase
D0887_RS06285	COG4772	TonB-dependent receptor
D0887_RS06310	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
D0887_RS06315	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0887_RS06320	COG1473	amidohydrolase
D0887_RS06325	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0887_RS06330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS06340	COG0765	amino acid transport
D0887_RS06345	COG1126	abc transporter atp-binding protein
D0887_RS06355	COG0625	glutathione transferase activity
D0887_RS06380	COG2211	Major facilitator Superfamily
D0887_RS06395	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D0887_RS06400	COG3842	ATPase activity
D0887_RS06405	COG1840	ABC-type Fe3 transport system, periplasmic component
D0887_RS06410	COG1178	ABC-type Fe3 transport system permease component
D0887_RS06415	COG2162	N-hydroxyarylamine O-acetyltransferase activity
D0887_RS06420	COG2181	nitrate reductase activity
D0887_RS06425	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
D0887_RS06430	COG1140	nitrate reductase beta subunit
D0887_RS06435	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
D0887_RS06455	COG1414	Transcriptional regulator
D0887_RS06460	COG4948	Mandelate Racemase Muconate Lactonizing
D0887_RS06465	COG4829	muconolactone delta-isomerase
D0887_RS06470	COG3485	protocatechuate 3,4-dioxygenase
D0887_RS06480	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
D0887_RS06500	COG3383	formate dehydrogenase (NAD+) activity
D0887_RS06500	COG0243	molybdopterin cofactor binding
D0887_RS06505	COG0243	molybdopterin cofactor binding
D0887_RS06505	COG3383	formate dehydrogenase (NAD+) activity
D0887_RS06510	COG0437	4 iron, 4 sulfur cluster binding
D0887_RS06515	COG2864	formate dehydrogenase
D0887_RS06530	COG2326	polyphosphate kinase activity
D0887_RS06540	COG2814	Major facilitator Superfamily
D0887_RS06550	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0887_RS06560	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0887_RS06570	COG0747	negative chemotaxis
D0887_RS06575	COG1064	alcohol dehydrogenase
D0887_RS06590	COG0488	(ABC) transporter
D0887_RS06625	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS06630	COG3729	General stress protein
D0887_RS06650	COG3685	Protein conserved in bacteria
D0887_RS06660	COG0366	Alpha amylase catalytic
D0887_RS06670	COG2323	membrane
D0887_RS06680	COG3111	PFAM Bacterial OB fold (BOF) protein
D0887_RS06685	COG1764	response to oxidative stress
D0887_RS06710	COG3781	membrane
D0887_RS06715	COG0243	molybdopterin cofactor binding
D0887_RS06720	COG0583	DNA-binding transcription factor activity
D0887_RS06725	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS06750	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS06755	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0887_RS06760	COG2814	Major facilitator Superfamily
D0887_RS06770	COG1285	pathogenesis
D0887_RS06775	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
D0887_RS06795	COG0519	Catalyzes the synthesis of GMP from XMP
D0887_RS06795	COG0518	GMP synthase (glutamine-hydrolyzing) activity
D0887_RS06835	COG0596	Alpha beta hydrolase
D0887_RS06845	COG2205	protein histidine kinase activity
D0887_RS06860	COG0076	glutamate decarboxylase activity
D0887_RS06865	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D0887_RS06870	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0887_RS06875	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0887_RS06880	COG1116	anion transmembrane transporter activity
D0887_RS06885	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
D0887_RS06900	COG0673	inositol 2-dehydrogenase activity
D0887_RS06910	COG1609	Transcriptional regulator
D0887_RS06915	COG3706	GGDEF domain
D0887_RS06935	COG0402	S-adenosylhomocysteine deaminase activity
D0887_RS06940	COG1953	Uracil, thiamine, allantoin
D0887_RS06975	COG0596	Alpha beta hydrolase
D0887_RS06990	COG2207	Transcriptional regulator
D0887_RS07070	COG0765	amino acid transport
D0887_RS07080	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
D0887_RS07090	COG2070	2-Nitropropane dioxygenase
D0887_RS07095	COG0583	DNA-binding transcription factor activity
D0887_RS07105	COG1902	pentaerythritol trinitrate reductase activity
D0887_RS07110	COG4529	Protein conserved in bacteria
D0887_RS07115	COG0477	Major facilitator Superfamily
D0887_RS07160	COG2223	nitrite transmembrane transporter activity
D0887_RS07170	COG1609	Transcriptional regulator
D0887_RS07175	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS07185	COG3037	sugar-specific permease SgaT UlaA
D0887_RS07190	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D0887_RS07200	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0887_RS07205	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0887_RS07205	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0887_RS07205	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
D0887_RS07215	COG1652	LysM domain
D0887_RS07245	COG0456	acetyltransferase
D0887_RS07245	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
D0887_RS07255	COG0667	Aldo Keto reductase
D0887_RS07260	COG0667	Aldo Keto reductase
D0887_RS07265	COG3386	PFAM SMP-30 Gluconolaconase
D0887_RS07270	COG0667	Aldo Keto reductase
D0887_RS07285	COG1473	amidohydrolase
D0887_RS07300	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0887_RS07305	COG0814	amino acid
D0887_RS07310	COG0583	DNA-binding transcription factor activity
D0887_RS07320	COG1294	oxidase, subunit
D0887_RS07325	COG1271	oxidase subunit
D0887_RS07335	COG3118	belongs to the thioredoxin family
D0887_RS07365	COG0583	DNA-binding transcription factor activity
D0887_RS07405	COG1929	Belongs to the glycerate kinase type-1 family
D0887_RS07410	COG3835	regulator
D0887_RS07420	COG0583	DNA-binding transcription factor activity
D0887_RS07430	COG2186	Transcriptional regulator
D0887_RS07435	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0887_RS07435	COG1263	PTS System
D0887_RS07450	COG2814	Major facilitator Superfamily
D0887_RS07455	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS07455	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS07465	COG2819	hydrolase of the alpha beta superfamily
D0887_RS07470	COG5001	Diguanylate cyclase
D0887_RS07470	COG3300	MHYT domain
D0887_RS07505	COG3188	usher protein
D0887_RS07520	COG1649	PFAM Uncharacterised BCR, COG1649
D0887_RS07525	COG3550	peptidyl-serine autophosphorylation
D0887_RS07530	COG1396	sequence-specific DNA binding
D0887_RS07535	COG2351	hydroxyisourate hydrolase activity
D0887_RS07540	COG3195	allantoin biosynthetic process
D0887_RS07540	COG3648	Uricase
D0887_RS07545	COG2233	PERMEase
D0887_RS07575	COG2207	Transcriptional regulator
D0887_RS07590	COG4628	conserved protein (DUF2132)
D0887_RS07610	COG2011	ABC-type metal ion transport system permease component
D0887_RS07615	COG2070	2-Nitropropane dioxygenase
D0887_RS07625	COG0477	Major facilitator Superfamily
D0887_RS07700	COG2199	diguanylate cyclase activity
D0887_RS07715	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS07720	COG0583	DNA-binding transcription factor activity
D0887_RS07730	COG0039	L-malate dehydrogenase activity
D0887_RS07735	COG1349	DNA-binding transcription factor activity
D0887_RS07740	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
D0887_RS07745	COG3395	kinase activity
D0887_RS07755	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D0887_RS07770	COG2731	YhcH YjgK YiaL family protein
D0887_RS07775	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS07800	COG4977	sequence-specific DNA binding
D0887_RS07810	COG0697	spore germination
D0887_RS07815	COG2814	Major facilitator Superfamily
D0887_RS07850	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D0887_RS07885	COG2223	nitrite transmembrane transporter activity
D0887_RS07890	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
D0887_RS07925	COG1349	DNA-binding transcription factor activity
D0887_RS07930	COG2084	Dehydrogenase
D0887_RS07935	COG3395	kinase activity
D0887_RS07940	COG0235	Class ii aldolase
D0887_RS07945	COG3622	Belongs to the hyi family
D0887_RS07950	COG2610	gluconate transmembrane transporter activity
D0887_RS07955	COG3708	Transcriptional regulator
D0887_RS07955	COG2207	Transcriptional regulator
D0887_RS07970	COG2200	EAL domain
D0887_RS07975	COG1546	Belongs to the CinA family
D0887_RS07980	COG0071	Belongs to the small heat shock protein (HSP20) family
D0887_RS08000	COG2135	peptidase activity
D0887_RS08005	COG2207	Transcriptional regulator
D0887_RS08020	COG4221	oxidoreductase activity
D0887_RS08025	COG1802	Transcriptional regulator
D0887_RS08030	COG0589	response to stress
D0887_RS08035	COG0246	Mannitol dehydrogenase
D0887_RS08040	COG2271	Major facilitator Superfamily
D0887_RS08055	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0887_RS08070	COG0243	molybdopterin cofactor binding
D0887_RS08075	COG0437	4 iron, 4 sulfur cluster binding
D0887_RS08080	COG3302	dmso reductase anchor subunit
D0887_RS08095	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
D0887_RS08100	COG1940	carbohydrate kinase activity
D0887_RS08105	COG0583	DNA-binding transcription factor activity
D0887_RS08110	COG2814	Major facilitator Superfamily
D0887_RS08115	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
D0887_RS08125	COG3591	Belongs to the peptidase S1B family
D0887_RS08145	COG0628	permease
D0887_RS08175	COG0679	Auxin Efflux Carrier
D0887_RS08185	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
D0887_RS08225	COG3290	protein histidine kinase activity
D0887_RS08230	COG4565	transcriptional regulatory protein
D0887_RS08255	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
D0887_RS08255	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
D0887_RS08270	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0887_RS08275	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
D0887_RS08285	COG0183	Belongs to the thiolase family
D0887_RS08290	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
D0887_RS08300	COG1414	Transcriptional regulator
D0887_RS08305	COG2840	Smr protein MutS2
D0887_RS08310	COG0583	DNA-binding transcription factor activity
D0887_RS08320	COG1473	amidohydrolase
D0887_RS08325	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
D0887_RS08340	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D0887_RS08355	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
D0887_RS08360	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
D0887_RS08380	COG0531	amino acid
D0887_RS08390	COG3136	membrane protein required for alginate biosynthesis
D0887_RS08395	COG0745	RESPONSE REGULATOR receiver
D0887_RS08405	COG2205	protein histidine kinase activity
D0887_RS08415	COG0114	fumarate hydratase activity
D0887_RS08420	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
D0887_RS08420	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
D0887_RS08425	COG1482	cell wall glycoprotein biosynthetic process
D0887_RS08430	COG5339	Protein conserved in bacteria
D0887_RS08435	COG1609	Transcriptional regulator
D0887_RS08440	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0887_RS08440	COG1263	PTS System
D0887_RS08445	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
D0887_RS08470	COG2391	methyltransferase activity
D0887_RS08475	COG0425	Belongs to the sulfur carrier protein TusA family
D0887_RS08480	COG5562	phage envelope protein
D0887_RS08485	COG0401	homolog of Blt101
D0887_RS08490	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D0887_RS08495	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS08500	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D0887_RS08505	COG0477	Major facilitator Superfamily
D0887_RS08510	COG1113	amino acid transport
D0887_RS08515	COG2988	succinylglutamate desuccinylase activity
D0887_RS08520	COG3724	N-succinylarginine dihydrolase activity
D0887_RS08525	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS08530	COG3138	arginine N-succinyltransferase
D0887_RS08535	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D0887_RS08540	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D0887_RS08545	COG0667	Aldo Keto reductase
D0887_RS08550	COG0583	DNA-binding transcription factor activity
D0887_RS08575	COG4122	O-methyltransferase activity
D0887_RS08580	COG1643	Atp-dependent helicase
D0887_RS08595	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D0887_RS08600	COG3327	negative regulation of DNA-templated transcription, initiation
D0887_RS08605	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
D0887_RS08610	COG0183	Belongs to the thiolase family
D0887_RS08615	COG2050	protein possibly involved in aromatic compounds catabolism
D0887_RS08620	COG1250	3-hydroxyacyl-CoA dehydrogenase
D0887_RS08625	COG1024	Enoyl-CoA hydratase
D0887_RS08630	COG1024	Enoyl-CoA hydratase
D0887_RS08635	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0887_RS08640	COG2151	metal-sulfur cluster biosynthetic enzyme
D0887_RS08645	COG3396	Phenylacetate-CoA oxygenase
D0887_RS08650	COG3460	Phenylacetate-CoA oxygenase
D0887_RS08655	COG3396	Phenylacetate-CoA oxygenase
D0887_RS08660	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS08660	COG2030	dehydratase
D0887_RS08690	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS08695	COG2207	Transcriptional regulator
D0887_RS08700	COG3784	Protein of unknown function (DUF1318)
D0887_RS08710	COG2911	Protein conserved in bacteria
D0887_RS08715	COG0586	Pfam SNARE associated Golgi protein
D0887_RS08720	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D0887_RS08725	COG3187	Heat shock protein
D0887_RS08730	COG3042	response to heat
D0887_RS08740	COG1013	pyruvate-flavodoxin oxidoreductase activity
D0887_RS08740	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D0887_RS08740	COG0674	pyruvate-flavodoxin oxidoreductase activity
D0887_RS08740	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
D0887_RS08745	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0887_RS08755	COG0589	response to stress
D0887_RS08765	COG0513	Belongs to the DEAD box helicase family
D0887_RS08785	COG1349	DNA-binding transcription factor activity
D0887_RS08790	COG0673	inositol 2-dehydrogenase activity
D0887_RS08805	COG1113	amino acid transport
D0887_RS08810	COG1522	sequence-specific DNA binding
D0887_RS08820	COG1448	Aminotransferase
D0887_RS08825	COG2011	ABC-type metal ion transport system permease component
D0887_RS08840	COG0436	Aminotransferase
D0887_RS08845	COG0604	alcohol dehydrogenase
D0887_RS08870	COG0583	DNA-binding transcription factor activity
D0887_RS08890	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS08895	COG1309	transcriptional regulator
D0887_RS08900	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS09010	COG2885	chlorophyll binding
D0887_RS09035	COG0693	protein deglycase activity
D0887_RS09040	COG1078	dGTPase activity
D0887_RS09045	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS09050	COG0583	DNA-binding transcription factor activity
D0887_RS09115	COG3250	beta-galactosidase activity
D0887_RS09120	COG0656	L-ascorbic acid biosynthetic process
D0887_RS09150	COG4166	transmembrane transport
D0887_RS09155	COG2866	Carboxypeptidase
D0887_RS09160	COG4948	Mandelate Racemase Muconate Lactonizing
D0887_RS09165	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
D0887_RS09170	COG3180	Ammonia monooxygenase
D0887_RS09180	COG1486	melibiose metabolic process
D0887_RS09185	COG0583	DNA-binding transcription factor activity
D0887_RS09195	COG3106	COG3106 Predicted ATPase
D0887_RS09205	COG1983	PspC domain protein
D0887_RS09215	COG1842	Phage shock protein A
D0887_RS09220	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D0887_RS09230	COG1473	amidohydrolase
D0887_RS09245	COG0702	epimerase
D0887_RS09260	COG4171	peptide transport system, permease
D0887_RS09275	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D0887_RS09285	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
D0887_RS09290	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0887_RS09290	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0887_RS09305	COG1349	DNA-binding transcription factor activity
D0887_RS09315	COG0023	Translation Initiation Factor
D0887_RS09325	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
D0887_RS09330	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
D0887_RS09335	COG0671	phosphoesterase, PA-phosphatase related
D0887_RS09345	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
D0887_RS09385	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS09390	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
D0887_RS09420	COG0583	DNA-binding transcription factor activity
D0887_RS09430	COG0009	L-threonylcarbamoyladenylate synthase
D0887_RS09440	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D0887_RS09445	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D0887_RS09445	COG0512	Glutamine amidotransferase of anthranilate synthase
D0887_RS09450	COG0135	phosphoribosylanthranilate isomerase activity
D0887_RS09450	COG0134	indole-3-glycerol-phosphate synthase activity
D0887_RS09475	COG4774	siderophore transport
D0887_RS09485	COG3047	cAMP biosynthetic process
D0887_RS09490	COG0727	PFAM Uncharacterised protein family (UPF0153)
D0887_RS09520	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0887_RS09525	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS09530	COG1988	membrane-bound metal-dependent
D0887_RS09535	COG1823	symporter activity
D0887_RS09545	COG0753	catalase activity
D0887_RS09555	COG1486	melibiose metabolic process
D0887_RS09560	COG2169	Transcriptional regulator
D0887_RS09560	COG1917	Cupin 2, conserved barrel domain protein
D0887_RS09565	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0887_RS09570	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS09575	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS09580	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0887_RS09590	COG0322	excinuclease ABC activity
D0887_RS09595	COG3678	ATP-independent chaperone mediated protein folding
D0887_RS09605	COG3724	N-succinylarginine dihydrolase activity
D0887_RS09615	COG3138	arginine N-succinyltransferase
D0887_RS09625	COG0708	Exodeoxyribonuclease III
D0887_RS09630	COG0398	Pfam SNARE associated Golgi protein
D0887_RS09635	COG0398	Pfam SNARE associated Golgi protein
D0887_RS09640	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0887_RS09650	COG4135	transport system, permease component
D0887_RS09655	COG4136	ATPase activity
D0887_RS09660	COG2897	thiosulfate sulfurtransferase activity
D0887_RS09665	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D0887_RS09670	COG0494	nUDIX hydrolase
D0887_RS09675	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D0887_RS09680	COG0604	alcohol dehydrogenase
D0887_RS09680	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS09680	COG3321	synthase
D0887_RS09685	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D0887_RS09690	COG0709	Synthesizes selenophosphate from selenide and ATP
D0887_RS09705	COG0778	Nitroreductase
D0887_RS09710	COG0616	signal peptide processing
D0887_RS09715	COG0252	asparaginase activity
D0887_RS09720	COG1335	isochorismatase
D0887_RS09735	COG3139	Protein of unknown function (DUF1315)
D0887_RS09755	COG0656	L-ascorbic acid biosynthetic process
D0887_RS09760	COG3713	MltA-interacting MipA family protein
D0887_RS09765	COG2766	serine protein kinase
D0887_RS09780	COG0386	Belongs to the glutathione peroxidase family
D0887_RS09800	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS09805	COG0583	DNA-binding transcription factor activity
D0887_RS09810	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D0887_RS09815	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
D0887_RS09825	COG0859	PFAM glycosyl transferase family 9
D0887_RS09830	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D0887_RS09840	COG2207	Transcriptional regulator
D0887_RS09845	COG2807	transmembrane transport
D0887_RS09850	COG0504	CTP synthase activity
D0887_RS09855	COG1683	Conserved Protein
D0887_RS09860	COG3189	MarR family transcriptional regulator
D0887_RS09865	COG3042	response to heat
D0887_RS09870	COG2199	diguanylate cyclase activity
D0887_RS09870	COG2203	Gaf domain
D0887_RS09890	COG3182	Iron-regulated membrane protein
D0887_RS09900	COG1560	Kdo2-lipid A biosynthetic process
D0887_RS09915	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
D0887_RS09920	COG3706	GGDEF domain
D0887_RS09925	COG0583	DNA-binding transcription factor activity
D0887_RS09930	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
D0887_RS09955	COG1294	oxidase, subunit
D0887_RS09960	COG1271	oxidase subunit
D0887_RS09965	COG3546	catalase activity
D0887_RS09970	COG3685	Protein conserved in bacteria
D0887_RS09975	COG3685	Protein conserved in bacteria
D0887_RS09980	COG3729	General stress protein
D0887_RS09985	COG1063	alcohol dehydrogenase
D0887_RS09990	COG3813	Protein conserved in bacteria
D0887_RS10010	COG0640	Transcriptional regulator
D0887_RS10015	COG0538	isocitrate dehydrogenase activity
D0887_RS10085	COG1196	nuclear chromosome segregation
D0887_RS10125	COG0740	serine-type endopeptidase activity
D0887_RS10210	COG1403	HNH endonuclease
D0887_RS10215	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
D0887_RS10225	COG1846	Transcriptional regulator
D0887_RS10315	COG0582	viral genome integration into host DNA
D0887_RS10320	COG0538	isocitrate dehydrogenase activity
D0887_RS10325	COG1187	pseudouridine synthase activity
D0887_RS10345	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
D0887_RS10365	COG2205	protein histidine kinase activity
D0887_RS10370	COG2850	peptidyl-arginine hydroxylation
D0887_RS10390	COG1177	transmembrane transport
D0887_RS10405	COG0318	PFAM AMP-dependent synthetase and ligase
D0887_RS10410	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D0887_RS10415	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D0887_RS10420	COG0698	ribose 5-phosphate isomerase
D0887_RS10435	COG3395	kinase activity
D0887_RS10450	COG2390	Transcriptional regulator
D0887_RS10460	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
D0887_RS10470	COG4591	ABC-type transport system involved in lipoprotein release permease component
D0887_RS10480	COG4591	ABC-type transport system involved in lipoprotein release permease component
D0887_RS10490	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
D0887_RS10495	COG1388	LysM domain
D0887_RS10495	COG1376	ErfK ybiS ycfS ynhG family protein
D0887_RS10505	COG1309	transcriptional regulator
D0887_RS10515	COG3134	Outer membrane lipoprotein
D0887_RS10520	COG1252	NADH dehydrogenase
D0887_RS10545	COG5633	Lipoprotein
D0887_RS10550	COG0537	adenosine 5'-monophosphoramidase activity
D0887_RS10560	COG0084	hydrolase, TatD family'
D0887_RS10565	COG0470	DNA polymerase III
D0887_RS10575	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D0887_RS10580	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D0887_RS10585	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D0887_RS10600	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
D0887_RS10620	COG1399	metal-binding, possibly nucleic acid-binding protein
D0887_RS10640	COG1530	ribonuclease E activity
D0887_RS10650	COG2814	Major facilitator Superfamily
D0887_RS10670	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0887_RS10720	COG1560	Kdo2-lipid A biosynthetic process
D0887_RS10740	COG5645	(Lipo)protein
D0887_RS10780	COG3381	protein complex oligomerization
D0887_RS10805	COG0583	DNA-binding transcription factor activity
D0887_RS10815	COG1335	isochorismatase
D0887_RS10830	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0887_RS10835	COG1702	phosphate starvation-inducible protein PhoH
D0887_RS10855	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0887_RS10865	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D0887_RS10885	COG1309	transcriptional regulator
D0887_RS10920	COG2233	PERMEase
D0887_RS10930	COG3729	General stress protein
D0887_RS10955	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS10970	COG0531	amino acid
D0887_RS10980	COG0174	glutamine synthetase
D0887_RS10985	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
D0887_RS10990	COG1917	Cupin 2, conserved barrel domain protein
D0887_RS10990	COG1396	sequence-specific DNA binding
D0887_RS10995	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS11000	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D0887_RS11005	COG0583	DNA-binding transcription factor activity
D0887_RS11010	COG0473	3-isopropylmalate dehydrogenase activity
D0887_RS11020	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0887_RS11025	COG4638	Rieske (2fe-2S)
D0887_RS11030	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS11035	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0887_RS11040	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS11040	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D0887_RS11040	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS11045	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0887_RS11050	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0887_RS11055	COG1882	Formate acetyltransferase
D0887_RS11060	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0887_RS11065	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0887_RS11075	COG2207	Transcriptional regulator
D0887_RS11080	COG3706	GGDEF domain
D0887_RS11105	COG2200	EAL domain
D0887_RS11115	COG0058	SHG alpha-glucan phosphorylase activity
D0887_RS11130	COG0670	Belongs to the BI1 family
D0887_RS11145	COG2207	Transcriptional regulator
D0887_RS11150	COG1881	PFAM PEBP family protein
D0887_RS11165	COG1832	CoA-binding protein
D0887_RS11175	COG0210	DNA helicase
D0887_RS11180	COG3304	Inner membrane component domain
D0887_RS11185	COG1289	transmembrane transporter activity
D0887_RS11190	COG3070	regulator of competence-specific genes
D0887_RS11215	COG1067	ATP-dependent peptidase activity
D0887_RS11225	COG3130	regulation of translation
D0887_RS11235	COG3009	Protein conserved in bacteria
D0887_RS11240	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D0887_RS11240	COG3008	intermembrane lipid transfer
D0887_RS11245	COG2995	paraquat-inducible protein a
D0887_RS11250	COG0488	(ABC) transporter
D0887_RS11260	COG3217	Mosc domain protein beta barrel domain protein
D0887_RS11260	COG0633	Ferredoxin
D0887_RS11275	COG0431	NADPH-dependent FMN reductase
D0887_RS11280	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0887_RS11285	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0887_RS11290	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0887_RS11300	COG0308	aminopeptidase N
D0887_RS11315	COG1473	amidohydrolase
D0887_RS11325	COG0814	amino acid
D0887_RS11335	COG1522	sequence-specific DNA binding
D0887_RS11345	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0887_RS11350	COG1448	Aminotransferase
D0887_RS11355	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D0887_RS11360	COG3108	Peptidase M15
D0887_RS11370	COG2989	Protein conserved in bacteria
D0887_RS11380	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
D0887_RS11390	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
D0887_RS11395	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D0887_RS11400	COG3173	Aminoglycoside phosphotransferase
D0887_RS11415	COG3214	Protein conserved in bacteria
D0887_RS11430	COG2333	competence protein COMEC
D0887_RS11430	COG0658	competence protein
D0887_RS11440	COG0539	negative regulation of cytoplasmic translation
D0887_RS11460	COG2323	membrane
D0887_RS11465	COG1944	ATP diphosphatase activity
D0887_RS11470	COG2116	formate transmembrane transporter activity
D0887_RS11475	COG1882	Formate acetyltransferase
D0887_RS11520	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
D0887_RS11530	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
D0887_RS11630	COG4695	Portal protein
D0887_RS11705	COG4974	Belongs to the 'phage' integrase family
D0887_RS11710	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0887_RS11715	COG0477	Major facilitator Superfamily
D0887_RS11725	COG3302	dmso reductase anchor subunit
D0887_RS11730	COG0437	4 iron, 4 sulfur cluster binding
D0887_RS11735	COG0243	molybdopterin cofactor binding
D0887_RS11745	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
D0887_RS11755	COG1178	ABC-type Fe3 transport system permease component
D0887_RS11755	COG1674	ftsk spoiiie
D0887_RS11765	COG0492	ferredoxin-NADP+ reductase activity
D0887_RS11770	COG4988	ABC transporter
D0887_RS11775	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
D0887_RS11790	COG0542	response to heat
D0887_RS11800	COG1278	Cold shock
D0887_RS11815	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS11820	COG3593	DNA synthesis involved in DNA repair
D0887_RS11830	COG2431	L-lysine efflux transmembrane transporter activity
D0887_RS11840	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0887_RS11850	COG0028	Belongs to the TPP enzyme family
D0887_RS11855	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
D0887_RS11860	COG0702	epimerase
D0887_RS11865	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D0887_RS11870	COG3023	N-Acetylmuramoyl-L-alanine amidase
D0887_RS11875	COG5001	Diguanylate cyclase
D0887_RS11875	COG2203	Gaf domain
D0887_RS11875	COG4251	negative regulation of phosphorylation
D0887_RS11875	COG3706	GGDEF domain
D0887_RS11890	COG1126	abc transporter atp-binding protein
D0887_RS11895	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS11900	COG4215	(ABC) transporter
D0887_RS11905	COG4160	amino acid transport
D0887_RS11910	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS11915	COG5002	protein histidine kinase activity
D0887_RS11920	COG0745	RESPONSE REGULATOR receiver
D0887_RS11935	COG1177	transmembrane transport
D0887_RS11940	COG1176	ABC-type spermidine putrescine transport system, permease component I
D0887_RS11945	COG3842	ATPase activity
D0887_RS11965	COG0778	Nitroreductase
D0887_RS12015	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
D0887_RS12045	COG3226	Transcriptional regulator
D0887_RS12050	COG0738	Major facilitator superfamily
D0887_RS12055	COG0561	phosphatase activity
D0887_RS12060	COG2814	Major facilitator Superfamily
D0887_RS12070	COG0671	phosphoesterase, PA-phosphatase related
D0887_RS12075	COG1349	DNA-binding transcription factor activity
D0887_RS12080	COG1686	Belongs to the peptidase S11 family
D0887_RS12085	COG0625	glutathione transferase activity
D0887_RS12090	COG2133	pyrroloquinoline quinone binding
D0887_RS12100	COG2223	nitrite transmembrane transporter activity
D0887_RS12125	COG0747	negative chemotaxis
D0887_RS12140	COG0303	'Molybdopterin
D0887_RS12145	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D0887_RS12150	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0887_RS12155	COG1882	Formate acetyltransferase
D0887_RS12160	COG0561	phosphatase activity
D0887_RS12170	COG1609	Transcriptional regulator
D0887_RS12175	COG2271	Major facilitator Superfamily
D0887_RS12185	COG0488	(ABC) transporter
D0887_RS12190	COG2365	Tyrosine phosphatase family
D0887_RS12195	COG1376	ErfK ybiS ycfS ynhG family protein
D0887_RS12200	COG2188	Transcriptional regulator
D0887_RS12205	COG2723	6-phospho-beta-galactosidase activity
D0887_RS12210	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D0887_RS12225	COG2194	sulfuric ester hydrolase activity
D0887_RS12230	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D0887_RS12245	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS12250	COG0765	amino acid transport
D0887_RS12255	COG1126	abc transporter atp-binding protein
D0887_RS12260	COG0668	transmembrane transport
D0887_RS12270	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D0887_RS12280	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D0887_RS12290	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D0887_RS12295	COG1199	ATP-dependent helicase activity
D0887_RS12300	COG0513	Belongs to the DEAD box helicase family
D0887_RS12310	COG3959	Transketolase, thiamine diphosphate binding domain
D0887_RS12315	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS12320	COG2271	Major facilitator Superfamily
D0887_RS12325	COG0583	DNA-binding transcription factor activity
D0887_RS12330	COG1309	transcriptional regulator
D0887_RS12335	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS12340	COG1131	(ABC) transporter
D0887_RS12345	COG0842	Transport permease protein
D0887_RS12350	COG0842	Transport permease protein
D0887_RS12365	COG3568	Endonuclease Exonuclease Phosphatase
D0887_RS12370	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D0887_RS12375	COG0392	lysyltransferase activity
D0887_RS12380	COG0670	Belongs to the BI1 family
D0887_RS12385	COG0314	molybdopterin synthase activity
D0887_RS12390	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
D0887_RS12400	COG0521	Mo-molybdopterin cofactor biosynthetic process
D0887_RS12425	COG0745	RESPONSE REGULATOR receiver
D0887_RS12430	COG0642	Histidine kinase
D0887_RS12465	COG2226	methyltransferase
D0887_RS12485	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D0887_RS12490	COG1881	PFAM PEBP family protein
D0887_RS12525	COG4677	pectinesterase activity
D0887_RS12535	COG0589	response to stress
D0887_RS12540	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS12570	COG0789	Transcriptional regulator
D0887_RS12575	COG2200	EAL domain
D0887_RS12600	COG0561	phosphatase activity
D0887_RS12610	COG4149	molybdate abc transporter
D0887_RS12615	COG0725	ABC transporter, periplasmic molybdate-binding protein
D0887_RS12625	COG3585	molybdate ion transport
D0887_RS12625	COG2005	Transcriptional regulator
D0887_RS12630	COG1119	ATPase activity
D0887_RS12640	COG1085	galactose-1-phosphate uridylyltransferase
D0887_RS12650	COG2017	converts alpha-aldose to the beta-anomer
D0887_RS12660	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0887_RS12675	COG3201	nicotinamide mononucleotide transporter
D0887_RS12680	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
D0887_RS12725	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
D0887_RS12730	COG2885	chlorophyll binding
D0887_RS12740	COG3064	Membrane
D0887_RS12745	COG0848	biopolymer transport protein
D0887_RS12750	COG0811	peptide transport
D0887_RS12755	COG0824	Thioesterase
D0887_RS12760	COG3790	cyd operon protein YbgE
D0887_RS12765	COG4890	Cyd operon protein YbgT
D0887_RS12770	COG1294	oxidase, subunit
D0887_RS12775	COG1271	oxidase subunit
D0887_RS12785	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D0887_RS12795	COG0508	dehydrogenase complex catalyzes the overall conversion of
D0887_RS12800	COG0567	Dehydrogenase, E1 component
D0887_RS12805	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D0887_RS12810	COG1053	succinate dehydrogenase
D0887_RS12815	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
D0887_RS12820	COG2009	succinate dehydrogenase
D0887_RS12865	COG1984	allophanate hydrolase subunit 2
D0887_RS12870	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
D0887_RS12885	COG0415	Belongs to the DNA photolyase family
D0887_RS12915	COG2205	protein histidine kinase activity
D0887_RS12920	COG0745	RESPONSE REGULATOR receiver
D0887_RS12930	COG0033	Phosphoglucomutase
D0887_RS12940	COG0596	Alpha beta hydrolase
D0887_RS12955	COG0735	belongs to the Fur family
D0887_RS13000	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D0887_RS13005	COG1846	Transcriptional regulator
D0887_RS13005	COG1940	carbohydrate kinase activity
D0887_RS13010	COG0647	UMP catabolic process
D0887_RS13015	COG0367	asparagine synthase
D0887_RS13060	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0887_RS13070	COG1702	phosphate starvation-inducible protein PhoH
D0887_RS13095	COG0765	amino acid transport
D0887_RS13100	COG0765	amino acid transport
D0887_RS13105	COG1126	abc transporter atp-binding protein
D0887_RS13120	COG2888	peptidyl-tyrosine sulfation
D0887_RS13135	COG1466	dna polymerase III delta subunit
D0887_RS13155	COG0799	negative regulation of ribosome biogenesis
D0887_RS13165	COG0768	penicillin binding
D0887_RS13170	COG0772	Belongs to the SEDS family
D0887_RS13175	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D0887_RS13180	COG1686	Belongs to the peptidase S11 family
D0887_RS13195	COG0583	DNA-binding transcription factor activity
D0887_RS13210	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D0887_RS13230	COG3069	C4-dicarboxylate transmembrane transporter activity
D0887_RS13235	COG3719	Belongs to the RNase T2 family
D0887_RS13240	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D0887_RS13260	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0887_RS13265	COG0583	DNA-binding transcription factor activity
D0887_RS13270	COG3969	phosphoadenosine phosphosulfate
D0887_RS13275	COG1475	DNA binding
D0887_RS13280	COG0436	Aminotransferase
D0887_RS13305	COG1129	ABC transporter
D0887_RS13310	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS13315	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS13325	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D0887_RS13340	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D0887_RS13350	COG0402	S-adenosylhomocysteine deaminase activity
D0887_RS13360	COG0483	inositol monophosphate 1-phosphatase activity
D0887_RS13365	COG2271	Major facilitator Superfamily
D0887_RS13395	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS13400	COG1129	ABC transporter
D0887_RS13410	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS13425	COG2879	small protein
D0887_RS13430	COG1966	Carbon starvation protein
D0887_RS13440	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS13445	COG3433	isochorismatase activity
D0887_RS13445	COG1535	isochorismatase
D0887_RS13450	COG1021	2,3-dihydroxybenzoate-AMP ligase
D0887_RS13455	COG1169	isochorismate synthase
D0887_RS13460	COG4592	Periplasmic binding protein
D0887_RS13470	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS13475	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS13480	COG1120	ATPase activity
D0887_RS13485	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D0887_RS13485	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
D0887_RS13490	COG3251	PFAM MbtH domain protein
D0887_RS13495	COG2382	esterase
D0887_RS13500	COG4771	TonB-dependent receptor
D0887_RS13510	COG1879	ABC-type sugar transport system periplasmic component
D0887_RS13520	COG1129	ABC transporter
D0887_RS13525	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS13530	COG5464	transposase or invertase
D0887_RS13535	COG2390	Transcriptional regulator
D0887_RS13540	COG3959	Transketolase, thiamine diphosphate binding domain
D0887_RS13545	COG3958	Transketolase
D0887_RS13555	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
D0887_RS13565	COG0583	DNA-binding transcription factor activity
D0887_RS13570	COG0668	transmembrane transport
D0887_RS13580	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0887_RS13610	COG0747	negative chemotaxis
D0887_RS13615	COG0601	transmembrane transport
D0887_RS13620	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0887_RS13625	COG0444	Belongs to the ABC transporter superfamily
D0887_RS13630	COG4608	Belongs to the ABC transporter superfamily
D0887_RS13635	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D0887_RS13640	COG4221	oxidoreductase activity
D0887_RS13650	COG4215	(ABC) transporter
D0887_RS13655	COG0765	amino acid transport
D0887_RS13660	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
D0887_RS13675	COG0697	spore germination
D0887_RS13690	COG4608	Belongs to the ABC transporter superfamily
D0887_RS13695	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0887_RS13715	COG3698	Phosphodiester glycosidase
D0887_RS13760	COG2315	Protein conserved in bacteria
D0887_RS13765	COG0778	Nitroreductase
D0887_RS13795	COG0477	Major facilitator Superfamily
D0887_RS13800	COG0668	transmembrane transport
D0887_RS13805	COG1609	Transcriptional regulator
D0887_RS13815	COG0673	inositol 2-dehydrogenase activity
D0887_RS13825	COG2211	Major facilitator Superfamily
D0887_RS13830	COG1113	amino acid transport
D0887_RS13845	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS13850	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D0887_RS13860	COG0531	amino acid
D0887_RS13875	COG4680	protein conserved in bacteria
D0887_RS13920	COG0667	Aldo Keto reductase
D0887_RS13925	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS13930	COG1473	amidohydrolase
D0887_RS13950	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS13955	COG1120	ATPase activity
D0887_RS13960	COG1566	PFAM secretion protein HlyD family protein
D0887_RS14005	COG4211	Belongs to the binding-protein-dependent transport system permease family
D0887_RS14010	COG1129	ABC transporter
D0887_RS14025	COG0673	inositol 2-dehydrogenase activity
D0887_RS14055	COG3104	oligopeptide transport
D0887_RS14060	COG1982	Orn Lys Arg decarboxylase major
D0887_RS14065	COG0531	amino acid
D0887_RS14070	COG3710	Transcriptional regulator
D0887_RS14080	COG1560	Kdo2-lipid A biosynthetic process
D0887_RS14095	COG3188	usher protein
D0887_RS14100	COG3121	Chaperone
D0887_RS14105	COG3539	Fimbrial protein
D0887_RS14160	COG2501	S4 domain
D0887_RS14170	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D0887_RS14190	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
D0887_RS14195	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
D0887_RS14210	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
D0887_RS14215	COG4181	ATPase activity
D0887_RS14220	COG2755	lipolytic protein G-D-S-L family
D0887_RS14225	COG0300	oxidoreductase activity
D0887_RS14230	COG3118	belongs to the thioredoxin family
D0887_RS14240	COG0390	transport system, permease component
D0887_RS14245	COG4619	ABC transporter
D0887_RS14250	COG0330	HflC and HflK could
D0887_RS14255	COG1585	Membrane protein implicated in regulation of membrane protease activity
D0887_RS14270	COG3735	TraB family
D0887_RS14275	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D0887_RS14285	COG2223	nitrite transmembrane transporter activity
D0887_RS14290	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D0887_RS14290	COG4651	solute:proton antiporter activity
D0887_RS14295	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0887_RS14340	COG2832	Protein of unknown function (DUF454)
D0887_RS14345	COG3923	Primosomal replication protein n
D0887_RS14355	COG5464	transposase or invertase
D0887_RS14360	COG1196	nuclear chromosome segregation
D0887_RS14360	COG3264	Mechanosensitive ion channel
D0887_RS14365	COG1309	transcriptional regulator
D0887_RS14370	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS14375	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0887_RS14390	COG0110	maltose O-acetyltransferase activity
D0887_RS14435	COG1874	Beta-galactosidase
D0887_RS14440	COG3867	Arabinogalactan endo-beta-1,4-galactanase
D0887_RS14445	COG3833	ABC-type maltose transport systems, permease component
D0887_RS14450	COG1175	transmembrane transport
D0887_RS14455	COG2182	Extracellular solute-binding protein
D0887_RS14465	COG4943	cyclic-guanylate-specific phosphodiesterase activity
D0887_RS14480	COG2364	Membrane
D0887_RS14510	COG3695	enzyme binding
D0887_RS14515	COG3126	Type III secretion system lipoprotein chaperone (YscW)
D0887_RS14520	COG1946	Acyl-CoA thioesterase
D0887_RS14525	COG0004	ammonium transporteR
D0887_RS14530	COG0347	Belongs to the P(II) protein family
D0887_RS14535	COG1132	(ABC) transporter
D0887_RS14540	COG1132	(ABC) transporter
D0887_RS14545	COG1522	sequence-specific DNA binding
D0887_RS14560	COG4533	DNA binding
D0887_RS14570	COG0824	Thioesterase
D0887_RS14575	COG1555	photosystem II stabilization
D0887_RS14580	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0887_RS14585	COG0776	regulation of translation
D0887_RS14590	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
D0887_RS14615	COG0271	Belongs to the BolA IbaG family
D0887_RS14620	COG3056	Lipoprotein
D0887_RS14625	COG2223	nitrite transmembrane transporter activity
D0887_RS14630	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
D0887_RS14635	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D0887_RS14640	COG1845	cytochrome c oxidase, subunit III
D0887_RS14645	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
D0887_RS14660	COG1414	Transcriptional regulator
D0887_RS14670	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
D0887_RS14675	COG1053	succinate dehydrogenase
D0887_RS14685	COG1053	succinate dehydrogenase
D0887_RS14700	COG0673	inositol 2-dehydrogenase activity
D0887_RS14705	COG2814	Major facilitator Superfamily
D0887_RS14715	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
D0887_RS14720	COG0693	protein deglycase activity
D0887_RS14740	COG0142	geranyltranstransferase activity
D0887_RS14750	COG0667	Aldo Keto reductase
D0887_RS14755	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D0887_RS14775	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D0887_RS14775	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D0887_RS14785	COG4238	major outer membrane lipoprotein
D0887_RS14805	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D0887_RS14810	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D0887_RS14815	COG1862	Preprotein translocase
D0887_RS14835	COG0450	alkyl hydroperoxide reductase
D0887_RS14840	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS14855	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0887_RS14865	COG1228	amidohydrolase
D0887_RS14875	COG1335	isochorismatase
D0887_RS14880	COG0583	DNA-binding transcription factor activity
D0887_RS14885	COG0366	Alpha amylase catalytic
D0887_RS14910	COG0420	3'-5' exonuclease activity
D0887_RS14915	COG0419	ATPase involved in DNA repair
D0887_RS14920	COG1940	carbohydrate kinase activity
D0887_RS14935	COG4126	flavin adenine dinucleotide binding
D0887_RS14945	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
D0887_RS14950	COG3416	Protein conserved in bacteria
D0887_RS14960	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D0887_RS14970	COG1785	Belongs to the alkaline phosphatase family
D0887_RS15010	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
D0887_RS15015	COG1335	isochorismatase
D0887_RS15020	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D0887_RS15025	COG0113	porphobilinogen synthase activity
D0887_RS15030	COG1943	Transposase
D0887_RS15040	COG2175	clavaminate synthase activity
D0887_RS15045	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0887_RS15050	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
D0887_RS15055	COG4521	taurine ABC transporter
D0887_RS15060	COG2040	homocysteine
D0887_RS15065	COG0833	amino acid
D0887_RS15075	COG4303	Ethanolamine ammonia lyase large subunit
D0887_RS15080	COG4302	ethanolamine ammonia-lyase activity
D0887_RS15115	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS15120	COG1126	abc transporter atp-binding protein
D0887_RS15125	COG4597	amino acid ABC transporter
D0887_RS15130	COG0765	amino acid transport
D0887_RS15145	COG3188	usher protein
D0887_RS15170	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
D0887_RS15180	COG3639	organic phosphonate transmembrane transporter activity
D0887_RS15210	COG0791	NLP P60 protein
D0887_RS15245	COG3188	usher protein
D0887_RS15250	COG3121	Chaperone
D0887_RS15255	COG3539	Fimbrial protein
D0887_RS15270	COG3710	Transcriptional regulator
D0887_RS15300	COG2200	EAL domain
D0887_RS15320	COG3121	Chaperone
D0887_RS15345	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
D0887_RS15365	COG0579	oxidoreductase
D0887_RS15370	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS15400	COG1113	amino acid transport
D0887_RS15405	COG1802	Transcriptional regulator
D0887_RS15420	COG0583	DNA-binding transcription factor activity
D0887_RS15430	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS15460	COG2195	Cleaves the N-terminal amino acid of tripeptides
D0887_RS15465	COG0454	-acetyltransferase
D0887_RS15480	COG2991	Protein conserved in bacteria
D0887_RS15495	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
D0887_RS15500	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
D0887_RS15520	COG3034	peptidoglycan biosynthetic process
D0887_RS15525	COG0121	glutamine amidotransferase
D0887_RS15535	COG1960	acyl-CoA dehydrogenase activity
D0887_RS15540	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D0887_RS15550	COG0583	DNA-binding transcription factor activity
D0887_RS15565	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D0887_RS15575	COG2226	methyltransferase
D0887_RS15585	COG1388	LysM domain
D0887_RS15585	COG0741	lytic transglycosylase activity
D0887_RS15590	COG2226	methyltransferase
D0887_RS15600	COG2814	Major facilitator Superfamily
D0887_RS15605	COG0583	DNA-binding transcription factor activity
D0887_RS15610	COG0656	L-ascorbic acid biosynthetic process
D0887_RS15650	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
D0887_RS15660	COG2011	ABC-type metal ion transport system permease component
D0887_RS15665	COG1464	Belongs to the NlpA lipoprotein family
D0887_RS15675	COG1720	tRNA m6t6A37 methyltransferase activity
D0887_RS15685	COG0791	NLP P60 protein
D0887_RS15690	COG3015	lipoprotein NlpE involved in copper resistance
D0887_RS15695	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
D0887_RS15710	COG4568	rho-dependent transcription termination
D0887_RS15720	COG0346	lactoylglutathione lyase activity
D0887_RS15725	COG1982	Orn Lys Arg decarboxylase major
D0887_RS15735	COG0587	DNA-directed DNA polymerase activity
D0887_RS15765	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
D0887_RS15775	COG0750	zinc metalloprotease
D0887_RS15780	COG0575	Belongs to the CDS family
D0887_RS15795	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
D0887_RS15820	COG0024	Methionine aminopeptidase
D0887_RS15825	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
D0887_RS15840	COG3835	regulator
D0887_RS15845	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0887_RS15865	COG2860	membrane
D0887_RS15885	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS15890	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D0887_RS15895	COG1120	ATPase activity
D0887_RS15900	COG4774	siderophore transport
D0887_RS15905	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D0887_RS15995	COG1643	Atp-dependent helicase
D0887_RS16000	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
D0887_RS16020	COG0617	tRNA 3'-terminal CCA addition
D0887_RS16025	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
D0887_RS16045	COG0726	polysaccharide deacetylase
D0887_RS16050	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS16055	COG0842	Transport permease protein
D0887_RS16060	COG1131	(ABC) transporter
D0887_RS16065	COG0288	reversible hydration of carbon dioxide
D0887_RS16075	COG4993	Dehydrogenase
D0887_RS16080	COG2132	Multicopper oxidase
D0887_RS16125	COG3064	Membrane
D0887_RS16140	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D0887_RS16145	COG0508	dehydrogenase complex catalyzes the overall conversion of
D0887_RS16150	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
D0887_RS16155	COG2186	Transcriptional regulator
D0887_RS16165	COG1113	amino acid transport
D0887_RS16170	COG2211	Major facilitator Superfamily
D0887_RS16175	COG3940	Belongs to the glycosyl hydrolase 43 family
D0887_RS16180	COG3725	Membrane protein required for beta-lactamase induction
D0887_RS16185	COG3023	N-Acetylmuramoyl-L-alanine amidase
D0887_RS16195	COG4969	Belongs to the N-Me-Phe pilin family
D0887_RS16200	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D0887_RS16205	COG1459	type II secretion system
D0887_RS16230	COG0494	nUDIX hydrolase
D0887_RS16250	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
D0887_RS16255	COG0849	cell division
D0887_RS16280	COG0772	Belongs to the SEDS family
D0887_RS16295	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
D0887_RS16300	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
D0887_RS16305	COG0768	penicillin binding
D0887_RS16330	COG1609	Transcriptional regulator
D0887_RS16340	COG0028	Belongs to the TPP enzyme family
D0887_RS16390	COG0738	Major facilitator superfamily
D0887_RS16405	COG2271	Major facilitator Superfamily
D0887_RS16410	COG2814	Major facilitator Superfamily
D0887_RS16430	COG1178	ABC-type Fe3 transport system permease component
D0887_RS16440	COG0586	Pfam SNARE associated Golgi protein
D0887_RS16460	COG0235	Class ii aldolase
D0887_RS16465	COG0417	DNA replication proofreading
D0887_RS16475	COG0564	pseudouridine synthase activity
D0887_RS16490	COG3493	citrate carrier protein
D0887_RS16505	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
D0887_RS16510	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
D0887_RS16520	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
D0887_RS16570	COG0505	Belongs to the CarA family
D0887_RS16585	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
D0887_RS16595	COG3152	Membrane
D0887_RS16610	COG1047	Peptidyl-prolyl cis-trans
D0887_RS16625	COG0196	riboflavin kinase activity
D0887_RS16640	COG0583	DNA-binding transcription factor activity
D0887_RS16665	COG4735	regulation of single-species biofilm formation
D0887_RS16670	COG1584	GPR1 FUN34 yaaH family protein
D0887_RS16675	COG0477	Major facilitator Superfamily
D0887_RS16680	COG0521	Mo-molybdopterin cofactor biosynthetic process
D0887_RS16685	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D0887_RS16690	COG1115	amino acid carrier protein
D0887_RS16705	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
D0887_RS16715	COG0527	aspartate kinase activity
D0887_RS16715	COG0460	homoserine dehydrogenase
D0887_RS16725	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
D0887_RS16740	COG0745	RESPONSE REGULATOR receiver
D0887_RS16745	COG4452	Inner membrane protein CreD
D0887_RS16750	COG2205	protein histidine kinase activity
D0887_RS16755	COG0745	RESPONSE REGULATOR receiver
D0887_RS16760	COG3045	CreA protein
D0887_RS16765	COG3708	Transcriptional regulator
D0887_RS16765	COG2207	Transcriptional regulator
D0887_RS16785	COG0741	lytic transglycosylase activity
D0887_RS16795	COG0488	(ABC) transporter
D0887_RS16805	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
D0887_RS16810	COG0560	Phosphoserine phosphatase
D0887_RS16820	COG3726	membrane protein affecting hemolysin expression
D0887_RS16850	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0887_RS16855	COG0084	hydrolase, TatD family'
D0887_RS16860	COG4667	esterase of the alpha-beta hydrolase superfamily
D0887_RS16870	COG2823	Periplasmic or secreted lipoprotein
D0887_RS16880	COG1011	Hydrolase
D0887_RS16885	COG0456	acetyltransferase
D0887_RS16890	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
D0887_RS16920	COG3706	GGDEF domain
D0887_RS16925	COG4114	ferric iron reductase
D0887_RS16930	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS16930	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS16935	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D0887_RS16940	COG2197	response regulator
D0887_RS16945	COG2197	response regulator
D0887_RS16965	COG2966	Psort location CytoplasmicMembrane, score
D0887_RS16980	COG1484	DNA-dependent DNA replication
D0887_RS16995	COG5464	transposase or invertase
D0887_RS17005	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D0887_RS17010	COG3716	PTS system mannose fructose sorbose family IID component
D0887_RS17015	COG3715	PTS system
D0887_RS17030	COG3933	PFAM sigma-54 factor interaction domain-containing protein
D0887_RS17030	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D0887_RS17040	COG1063	alcohol dehydrogenase
D0887_RS17045	COG1802	Transcriptional regulator
D0887_RS17050	COG2271	Major facilitator Superfamily
D0887_RS17055	COG1214	PFAM Peptidase M22, glycoprotease
D0887_RS17055	COG0456	acetyltransferase
D0887_RS17065	COG1737	Transcriptional regulator
D0887_RS17070	COG0800	Aldolase
D0887_RS17075	COG3734	2-keto-3-deoxy-galactonokinase
D0887_RS17090	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
D0887_RS17120	COG1846	Transcriptional regulator
D0887_RS17125	COG0179	Fumarylacetoacetate (FAA) hydrolase
D0887_RS17135	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS17140	COG3384	dioxygenase
D0887_RS17150	COG3971	2-oxopent-4-enoate hydratase activity
D0887_RS17170	COG2368	4-hydroxyphenylacetate
D0887_RS17175	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D0887_RS17190	COG1966	Carbon starvation protein
D0887_RS17195	COG2879	small protein
D0887_RS17200	COG0523	cobalamin synthesis protein
D0887_RS17210	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS17215	COG5464	transposase or invertase
D0887_RS17220	COG2207	Transcriptional regulator
D0887_RS17220	COG1917	Cupin 2, conserved barrel domain protein
D0887_RS17230	COG2733	membrane
D0887_RS17245	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
D0887_RS17250	COG1924	4 iron, 4 sulfur cluster binding
D0887_RS17265	COG1566	PFAM secretion protein HlyD family protein
D0887_RS17275	COG5457	Domain of unknown function (DUF1127)
D0887_RS17280	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0887_RS17290	COG0583	DNA-binding transcription factor activity
D0887_RS17295	COG2249	NAD(P)H dehydrogenase (quinone) activity
D0887_RS17305	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS17310	COG1129	ABC transporter
D0887_RS17315	COG1879	ABC-type sugar transport system periplasmic component
D0887_RS17325	COG3706	GGDEF domain
D0887_RS17330	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS17335	COG1129	ABC transporter
D0887_RS17335	COG0842	Transport permease protein
D0887_RS17340	COG0842	Transport permease protein
D0887_RS17375	COG2850	peptidyl-arginine hydroxylation
D0887_RS17390	COG5002	protein histidine kinase activity
D0887_RS17395	COG0745	RESPONSE REGULATOR receiver
D0887_RS17405	COG1538	Outer membrane efflux protein
D0887_RS17410	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS17415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS17420	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0887_RS17430	COG3040	lipid binding
D0887_RS17435	COG0789	Transcriptional regulator
D0887_RS17445	COG0300	oxidoreductase activity
D0887_RS17460	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
D0887_RS17480	COG3272	Protein of unknown function (DUF1722)
D0887_RS17485	COG4580	involved in the transport of maltose and maltodextrins
D0887_RS17490	COG2115	Belongs to the xylose isomerase family
D0887_RS17495	COG2211	Major facilitator Superfamily
D0887_RS17500	COG3507	Belongs to the glycosyl hydrolase 43 family
D0887_RS17520	COG1216	Glycosyl transferase, family 2
D0887_RS17575	COG1715	Restriction endonuclease
D0887_RS17615	COG0582	viral genome integration into host DNA
D0887_RS17655	COG3634	alkyl hydroperoxide reductase activity
D0887_RS17660	COG1959	2 iron, 2 sulfur cluster binding
D0887_RS17680	COG4977	sequence-specific DNA binding
D0887_RS17695	COG2814	Major facilitator Superfamily
D0887_RS17700	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D0887_RS17705	COG0583	DNA-binding transcription factor activity
D0887_RS17725	COG0477	Major facilitator Superfamily
D0887_RS17730	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS17735	COG2084	Dehydrogenase
D0887_RS17740	COG0583	DNA-binding transcription factor activity
D0887_RS17755	COG0288	reversible hydration of carbon dioxide
D0887_RS17760	COG0659	secondary active sulfate transmembrane transporter activity
D0887_RS17765	COG1064	alcohol dehydrogenase
D0887_RS17770	COG1175	transmembrane transport
D0887_RS17775	COG0395	ABC-type sugar transport system, permease component
D0887_RS17780	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D0887_RS17785	COG3842	ATPase activity
D0887_RS17805	COG1082	Xylose isomerase domain protein TIM barrel
D0887_RS17815	COG3962	Belongs to the TPP enzyme family
D0887_RS17820	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0887_RS17825	COG1737	Transcriptional regulator
D0887_RS17825	COG0837	glucose binding
D0887_RS17840	COG3718	enzyme involved in inositol metabolism
D0887_RS17855	COG0433	COG0433 Predicted ATPase
D0887_RS17860	COG0795	lipopolysaccharide-transporting ATPase activity
D0887_RS17865	COG0795	lipopolysaccharide-transporting ATPase activity
D0887_RS17880	COG2927	DNA polymerase III (CHI subunit)
D0887_RS17885	COG0525	valine-tRNA ligase activity
D0887_RS17910	COG2731	YhcH YjgK YiaL family protein
D0887_RS17955	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0887_RS17955	COG1263	PTS System
D0887_RS17960	COG0366	Alpha amylase catalytic
D0887_RS17965	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS17970	COG1486	melibiose metabolic process
D0887_RS17990	COG0602	queuosine metabolic process
D0887_RS17995	COG2026	Addiction module toxin, RelE StbE family
D0887_RS18000	COG3077	Addiction module antitoxin, RelB DinJ family
D0887_RS18005	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS18005	COG3711	transcriptional antiterminator
D0887_RS18010	COG2706	6-phosphogluconolactonase activity
D0887_RS18025	COG3964	amidohydrolase
D0887_RS18060	COG0312	modulator of DNA gyrase
D0887_RS18085	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
D0887_RS18095	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS18100	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS18105	COG1129	ABC transporter
D0887_RS18110	COG1879	ABC-type sugar transport system periplasmic component
D0887_RS18125	COG2105	PFAM AIG2 family protein
D0887_RS18130	COG2911	Protein conserved in bacteria
D0887_RS18135	COG0729	surface antigen
D0887_RS18170	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D0887_RS18175	COG1609	Transcriptional regulator
D0887_RS18180	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
D0887_RS18185	COG1253	flavin adenine dinucleotide binding
D0887_RS18210	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
D0887_RS18225	COG1733	regulation of RNA biosynthetic process
D0887_RS18230	COG0702	epimerase
D0887_RS18240	COG0697	spore germination
D0887_RS18250	COG1113	amino acid transport
D0887_RS18255	COG0545	Peptidyl-prolyl cis-trans isomerase
D0887_RS18260	COG3061	Opacity-associated protein A
D0887_RS18270	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
D0887_RS18275	COG2965	DNA replication, synthesis of RNA primer
D0887_RS18335	COG1073	alpha beta
D0887_RS18340	COG3650	response to hydrogen peroxide
D0887_RS18350	COG1960	acyl-CoA dehydrogenase activity
D0887_RS18355	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0887_RS18360	COG0557	exoribonuclease II activity
D0887_RS18375	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
D0887_RS18385	COG0330	HflC and HflK could
D0887_RS18390	COG0330	HflC and HflK could
D0887_RS18395	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
D0887_RS18420	COG0802	atpase or kinase
D0887_RS18425	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
D0887_RS18425	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
D0887_RS18430	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
D0887_RS18455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS18480	COG1511	domain protein
D0887_RS18480	COG3264	Mechanosensitive ion channel
D0887_RS18495	COG1053	succinate dehydrogenase
D0887_RS18500	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D0887_RS18520	COG2076	Multidrug Resistance protein
D0887_RS18525	COG5510	response to toxic substance
D0887_RS18540	COG1509	lysine 2,3-aminomutase activity
D0887_RS18605	COG0531	amino acid
D0887_RS18610	COG3030	protein affecting phage T7 exclusion by the F plasmid
D0887_RS18620	COG1027	Aspartate ammonia-lyase
D0887_RS18625	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D0887_RS18640	COG1309	transcriptional regulator
D0887_RS18690	COG0457	Tetratricopeptide repeat
D0887_RS18695	COG1649	PFAM Uncharacterised BCR, COG1649
D0887_RS18695	COG0726	polysaccharide deacetylase
D0887_RS18700	COG1215	transferase activity, transferring glycosyl groups
D0887_RS18720	COG0861	Integral membrane protein TerC family
D0887_RS18750	COG1486	melibiose metabolic process
D0887_RS18760	COG2169	Transcriptional regulator
D0887_RS18775	COG2824	Alkylphosphonate utilization operon protein PhnA
D0887_RS18780	COG2764	glyoxalase bleomycin resistance protein dioxygenase
D0887_RS18785	COG2188	Transcriptional regulator
D0887_RS18790	COG3624	Phosphonate C-P lyase system protein PhnG
D0887_RS18795	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
D0887_RS18800	COG3626	phosphonate metabolism
D0887_RS18805	COG3627	carbon phosphorus lyase activity
D0887_RS18810	COG4107	phosphonate C-P lyase system protein PhnK
D0887_RS18815	COG4778	phosphonate C-P lyase system protein PhnL
D0887_RS18820	COG3454	Phosphonate metabolism
D0887_RS18830	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
D0887_RS18840	COG0784	Response regulator, receiver
D0887_RS18840	COG4191	Histidine kinase
D0887_RS18845	COG1129	ABC transporter
D0887_RS18850	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS18875	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
D0887_RS18880	COG1301	dicarboxylic acid transport
D0887_RS18890	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D0887_RS18900	COG3162	membrane
D0887_RS18930	COG3539	Fimbrial protein
D0887_RS18935	COG1346	cytolysis
D0887_RS18940	COG1380	Effector of murein hydrolase LrgA
D0887_RS18945	COG0583	DNA-binding transcription factor activity
D0887_RS18950	COG0025	NhaP-type Na H and K H
D0887_RS18955	COG2252	PERMEase
D0887_RS18960	COG0625	glutathione transferase activity
D0887_RS18970	COG0789	Transcriptional regulator
D0887_RS18980	COG4943	cyclic-guanylate-specific phosphodiesterase activity
D0887_RS19015	COG1234	tRNA 3'-trailer cleavage
D0887_RS19020	COG1609	Transcriptional regulator
D0887_RS19025	COG0483	inositol monophosphate 1-phosphatase activity
D0887_RS19040	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0887_RS19060	COG4771	TonB-dependent receptor
D0887_RS19065	COG0741	lytic transglycosylase activity
D0887_RS19085	COG2315	Protein conserved in bacteria
D0887_RS19090	COG0432	Pfam Uncharacterised protein family UPF0047
D0887_RS19105	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D0887_RS19110	COG0305	Participates in initiation and elongation during chromosome replication
D0887_RS19125	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D0887_RS19135	COG0735	belongs to the Fur family
D0887_RS19140	COG3237	CsbD-like
D0887_RS19145	COG0534	Mate efflux family protein
D0887_RS19155	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
D0887_RS19230	COG0251	oxidation-reduction process
D0887_RS19240	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
D0887_RS19260	COG0527	aspartate kinase activity
D0887_RS19310	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
D0887_RS19320	COG0456	acetyltransferase
D0887_RS19360	COG0151	Belongs to the GarS family
D0887_RS19370	COG4191	Histidine kinase
D0887_RS19375	COG3678	ATP-independent chaperone mediated protein folding
D0887_RS19410	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
D0887_RS19425	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D0887_RS19430	COG2104	thiamine diphosphate biosynthetic process
D0887_RS19450	COG3706	GGDEF domain
D0887_RS19460	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0887_RS19465	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D0887_RS19505	COG0250	Participates in transcription elongation, termination and antitermination
D0887_RS19555	COG0812	UDP-N-acetylmuramate dehydrogenase activity
D0887_RS19585	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
D0887_RS19595	COG1739	Uncharacterized protein family UPF0029
D0887_RS19640	COG0805	protein transport
D0887_RS19660	COG3165	ubiquinone biosynthetic process from chorismate
D0887_RS19690	COG0583	DNA-binding transcription factor activity
D0887_RS19695	COG0697	spore germination
D0887_RS19700	COG0561	phosphatase activity
D0887_RS19705	COG2267	carboxylic ester hydrolase activity
D0887_RS19710	COG1280	lysine exporter protein (LysE YggA)
D0887_RS19720	COG1280	lysine exporter protein (LysE YggA)
D0887_RS19755	COG0210	DNA helicase
D0887_RS19760	COG1011	Hydrolase
D0887_RS19790	COG3072	Adenylate cyclase
D0887_RS19805	COG2959	enzyme of heme biosynthesis
D0887_RS19810	COG3071	HemY protein
D0887_RS19855	COG2244	polysaccharide biosynthetic process
D0887_RS19860	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D0887_RS19865	COG0456	acetyltransferase
D0887_RS19870	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
D0887_RS19875	COG1088	dTDP-glucose 4,6-dehydratase activity
D0887_RS19880	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
D0887_RS19885	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
D0887_RS19895	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
D0887_RS19900	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
D0887_RS19910	COG3118	belongs to the thioredoxin family
D0887_RS19940	COG1811	Na channel or pump
D0887_RS19950	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0887_RS19955	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0887_RS19965	COG0583	DNA-binding transcription factor activity
D0887_RS19970	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D0887_RS19985	COG3978	acetolactate synthase activity
D0887_RS20005	COG3085	chromosome segregation
D0887_RS20080	COG0583	DNA-binding transcription factor activity
D0887_RS20105	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
D0887_RS20120	COG3443	Belongs to the bacterial solute-binding protein 9 family
D0887_RS20125	COG2207	Transcriptional regulator
D0887_RS20135	COG0371	Dehydrogenase
D0887_RS20140	COG0697	spore germination
D0887_RS20150	COG0583	DNA-binding transcription factor activity
D0887_RS20160	COG0737	Belongs to the 5'-nucleotidase family
D0887_RS20170	COG0460	homoserine dehydrogenase
D0887_RS20170	COG0527	aspartate kinase activity
D0887_RS20175	COG0626	cystathionine gamma-synthase activity
D0887_RS20190	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D0887_RS20195	COG1609	Transcriptional regulator
D0887_RS20200	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D0887_RS20215	COG1575	Belongs to the MenA family. Type 1 subfamily
D0887_RS20380	COG4695	Portal protein
D0887_RS20450	COG4974	Belongs to the 'phage' integrase family
D0887_RS20455	COG3678	ATP-independent chaperone mediated protein folding
D0887_RS20460	COG0745	RESPONSE REGULATOR receiver
D0887_RS20465	COG2205	protein histidine kinase activity
D0887_RS20470	COG2258	MOSC domain
D0887_RS20475	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D0887_RS20520	COG1129	ABC transporter
D0887_RS20525	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS20530	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS20535	COG1454	alcohol dehydrogenase
D0887_RS20545	COG2211	Major facilitator Superfamily
D0887_RS20590	COG0243	molybdopterin cofactor binding
D0887_RS20590	COG3383	formate dehydrogenase (NAD+) activity
D0887_RS20595	COG0243	molybdopterin cofactor binding
D0887_RS20595	COG3383	formate dehydrogenase (NAD+) activity
D0887_RS20600	COG0437	4 iron, 4 sulfur cluster binding
D0887_RS20605	COG2864	formate dehydrogenase
D0887_RS20620	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
D0887_RS20630	COG0456	acetyltransferase
D0887_RS20645	COG1011	Hydrolase
D0887_RS20665	COG3852	Histidine kinase
D0887_RS20675	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D0887_RS20710	COG0204	Acyl-transferase
D0887_RS20720	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D0887_RS20725	COG3084	Protein conserved in bacteria
D0887_RS20735	COG1763	Mo-molybdopterin cofactor biosynthetic process
D0887_RS20765	COG2186	Transcriptional regulator
D0887_RS20770	COG0477	Major facilitator Superfamily
D0887_RS20775	COG1609	Transcriptional regulator
D0887_RS20780	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0887_RS20790	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0887_RS20795	COG1129	ABC transporter
D0887_RS20825	COG1522	sequence-specific DNA binding
D0887_RS20830	COG0716	FMN binding
D0887_RS20845	COG3312	ion transport
D0887_RS20895	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D0887_RS20900	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
D0887_RS20905	COG0573	inorganic phosphate transmembrane transporter activity
D0887_RS20910	COG0581	inorganic phosphate transmembrane transporter activity
D0887_RS20915	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D0887_RS20920	COG0704	Plays a role in the regulation of phosphate uptake
D0887_RS20935	COG2382	esterase
D0887_RS20940	COG0363	glucosamine-6-phosphate deaminase activity
D0887_RS20945	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0887_RS20955	COG2252	PERMEase
D0887_RS20960	COG0431	NADPH-dependent FMN reductase
D0887_RS20965	COG2091	lysine biosynthetic process via aminoadipic acid
D0887_RS21000	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
D0887_RS21035	COG0187	DNA topoisomerase II activity
D0887_RS21040	COG0561	phosphatase activity
D0887_RS21055	COG2186	Transcriptional regulator
D0887_RS21060	COG3734	2-keto-3-deoxy-galactonokinase
D0887_RS21065	COG0800	Aldolase
D0887_RS21075	COG2271	Major facilitator Superfamily
D0887_RS21080	COG0823	Involved in the tonB-independent uptake of proteins
D0887_RS21085	COG5645	(Lipo)protein
D0887_RS21100	COG3645	SOS response
D0887_RS21110	COG2188	Transcriptional regulator
D0887_RS21125	COG2149	membrane
D0887_RS21145	COG2610	gluconate transmembrane transporter activity
D0887_RS21150	COG0583	DNA-binding transcription factor activity
D0887_RS21155	COG2814	Major facilitator Superfamily
D0887_RS21180	COG0028	Belongs to the TPP enzyme family
D0887_RS21185	COG0440	acetolactate synthase activity
D0887_RS21190	COG2197	response regulator
D0887_RS21200	COG2271	Major facilitator Superfamily
D0887_RS21245	COG2188	Transcriptional regulator
D0887_RS21270	COG4580	involved in the transport of maltose and maltodextrins
D0887_RS21275	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0887_RS21280	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS21280	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS21290	COG1609	Transcriptional regulator
D0887_RS21300	COG3384	dioxygenase
D0887_RS21305	COG0583	DNA-binding transcription factor activity
D0887_RS21310	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D0887_RS21315	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
D0887_RS21320	COG2828	Protein conserved in bacteria
D0887_RS21335	COG0697	spore germination
D0887_RS21340	COG1263	PTS System
D0887_RS21340	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0887_RS21350	COG2814	Major facilitator Superfamily
D0887_RS21395	COG0583	DNA-binding transcription factor activity
D0887_RS21420	COG1464	Belongs to the NlpA lipoprotein family
D0887_RS21435	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
D0887_RS21445	COG1064	alcohol dehydrogenase
D0887_RS21530	COG0582	viral genome integration into host DNA
D0887_RS21540	COG2211	Major facilitator Superfamily
D0887_RS21545	COG1501	Belongs to the glycosyl hydrolase 31 family
D0887_RS21555	COG1486	melibiose metabolic process
D0887_RS21560	COG1263	PTS System
D0887_RS21560	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0887_RS21565	COG2982	Protein involved in outer membrane biogenesis
D0887_RS21570	COG2233	PERMEase
D0887_RS21575	COG0786	glutamate:sodium symporter activity
D0887_RS21595	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
D0887_RS21620	COG3152	Membrane
D0887_RS21630	COG1494	fructose-1,6-bisphosphatase
D0887_RS21635	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
D0887_RS21640	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0887_RS21645	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D0887_RS21665	COG2860	membrane
D0887_RS21675	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D0887_RS21675	COG2169	Transcriptional regulator
D0887_RS21680	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
D0887_RS21685	COG1561	YicC-like family, N-terminal region
D0887_RS21705	COG1131	(ABC) transporter
D0887_RS21710	COG0842	Transport permease protein
D0887_RS21735	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D0887_RS21770	COG1519	Transferase
D0887_RS21775	COG1216	Glycosyl transferase, family 2
D0887_RS21780	COG0438	transferase activity, transferring glycosyl groups
D0887_RS21790	COG0859	PFAM glycosyl transferase family 9
D0887_RS21815	COG0859	PFAM glycosyl transferase family 9
D0887_RS21830	COG0156	8-amino-7-oxononanoate synthase activity
D0887_RS21840	COG0463	Glycosyl transferase, family 2
D0887_RS21845	COG2861	carbohydrate metabolic process
D0887_RS21850	COG4942	peptidase
D0887_RS21860	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D0887_RS21865	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D0887_RS21885	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
D0887_RS21895	COG2186	Transcriptional regulator
D0887_RS21915	COG3722	fumarate hydratase activity
D0887_RS21935	COG0625	glutathione transferase activity
D0887_RS21945	COG3276	selenocysteine insertion sequence binding
D0887_RS21950	COG1414	Transcriptional regulator
D0887_RS21955	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0887_RS21960	COG3977	Valine--pyruvate aminotransferase
D0887_RS21965	COG0366	Alpha amylase catalytic
D0887_RS21975	COG2992	FlgJ-related protein
D0887_RS21980	COG2207	Transcriptional regulator
D0887_RS21980	COG1609	Transcriptional regulator
D0887_RS21985	COG4214	carbohydrate transport
D0887_RS21995	COG4213	ABC transporter substrate-binding protein
D0887_RS22015	COG4682	membrane
D0887_RS22020	COG4682	membrane
D0887_RS22025	COG3274	enterobacterial common antigen metabolic process
D0887_RS22065	COG1278	Cold shock
D0887_RS22070	COG2944	sequence-specific DNA binding
D0887_RS22075	COG2814	Major facilitator Superfamily
D0887_RS22100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0887_RS22110	COG1609	Transcriptional regulator
D0887_RS22115	COG2885	chlorophyll binding
D0887_RS22120	COG0243	molybdopterin cofactor binding
D0887_RS22125	COG0456	acetyltransferase
D0887_RS22130	COG2818	Glycosylase
D0887_RS22135	COG5571	outer membrane autotransporter
D0887_RS22140	COG2223	nitrite transmembrane transporter activity
D0887_RS22180	COG0747	negative chemotaxis
D0887_RS22185	COG0601	transmembrane transport
D0887_RS22190	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0887_RS22195	COG0444	Belongs to the ABC transporter superfamily
D0887_RS22200	COG4608	Belongs to the ABC transporter superfamily
D0887_RS22215	COG2894	cell division
D0887_RS22225	COG1215	transferase activity, transferring glycosyl groups
D0887_RS22230	COG0457	Tetratricopeptide repeat
D0887_RS22245	COG2194	sulfuric ester hydrolase activity
D0887_RS22275	COG1215	transferase activity, transferring glycosyl groups
D0887_RS22280	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
D0887_RS22285	COG0457	Tetratricopeptide repeat
D0887_RS22285	COG3118	belongs to the thioredoxin family
D0887_RS22290	COG2199	diguanylate cyclase activity
D0887_RS22290	COG2200	EAL domain
D0887_RS22305	COG0612	Peptidase, M16
D0887_RS22320	COG2982	Protein involved in outer membrane biogenesis
D0887_RS22325	COG0477	Major facilitator Superfamily
D0887_RS22330	COG1295	ribonuclease BN
D0887_RS22335	COG0583	DNA-binding transcription factor activity
D0887_RS22340	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS22345	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0887_RS22355	COG1454	alcohol dehydrogenase
D0887_RS22365	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D0887_RS22370	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
D0887_RS22375	COG0671	phosphoesterase, PA-phosphatase related
D0887_RS22395	COG0589	response to stress
D0887_RS22405	COG0306	phosphate transporter
D0887_RS22410	COG2081	HI0933 family
D0887_RS22415	COG2239	Acts as a magnesium transporter
D0887_RS22430	COG1124	(ABC) transporter
D0887_RS22440	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0887_RS22445	COG0601	transmembrane transport
D0887_RS22450	COG0747	negative chemotaxis
D0887_RS22465	COG3479	Phenolic acid decarboxylase
D0887_RS22505	COG0628	permease
D0887_RS22510	COG0477	Major facilitator Superfamily
D0887_RS22520	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
D0887_RS22535	COG3714	YhhN family
D0887_RS22545	COG3776	membrane
D0887_RS22550	COG0742	ribosomal rna small subunit methyltransferase
D0887_RS22555	COG0552	protein localization to endoplasmic reticulum
D0887_RS22560	COG2884	Cell division ATP-binding protein ftsE
D0887_RS22565	COG2177	Part of the ABC transporter FtsEX involved in
D0887_RS22580	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D0887_RS22595	COG0683	leucine binding
D0887_RS22610	COG0683	leucine binding
D0887_RS22615	COG0559	Belongs to the binding-protein-dependent transport system permease family
D0887_RS22665	COG0584	glycerophosphoryl diester phosphodiesterase
D0887_RS22675	COG0405	Gamma-glutamyltransferase
D0887_RS22680	COG1247	-acetyltransferase
D0887_RS22690	COG0673	inositol 2-dehydrogenase activity
D0887_RS22695	COG1741	Belongs to the pirin family
D0887_RS22700	COG1609	Transcriptional regulator
D0887_RS22705	COG3265	gluconokinase activity
D0887_RS22710	COG2610	gluconate transmembrane transporter activity
D0887_RS22720	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D0887_RS22745	COG0058	SHG alpha-glucan phosphorylase activity
D0887_RS22750	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D0887_RS22765	COG1349	DNA-binding transcription factor activity
D0887_RS22780	COG0058	SHG alpha-glucan phosphorylase activity
D0887_RS22785	COG1640	4-alpha-glucanotransferase
D0887_RS22790	COG2610	gluconate transmembrane transporter activity
D0887_RS22800	COG1040	competence protein
D0887_RS22825	COG1918	ferrous iron import across plasma membrane
D0887_RS22830	COG2183	response to ionizing radiation
D0887_RS22835	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D0887_RS22860	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
D0887_RS22865	COG1011	Hydrolase
D0887_RS22875	COG0494	nUDIX hydrolase
D0887_RS22880	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
D0887_RS22905	COG4796	Type ii and iii secretion system protein
D0887_RS22925	COG3266	domain, Protein
D0887_RS22930	COG0338	D12 class N6 adenine-specific DNA methyltransferase
D0887_RS22935	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D0887_RS22960	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D0887_RS22965	COG0402	S-adenosylhomocysteine deaminase activity
D0887_RS22970	COG0738	Major facilitator superfamily
D0887_RS22995	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D0887_RS23000	COG1289	transmembrane transporter activity
D0887_RS23015	COG1765	OsmC-like protein
D0887_RS23020	COG3954	Phosphoribulokinase
D0887_RS23030	COG0429	hydrolase of the alpha beta-hydrolase fold
D0887_RS23040	COG0488	(ABC) transporter
D0887_RS23060	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
D0887_RS23065	COG1047	Peptidyl-prolyl cis-trans
D0887_RS23075	COG0545	Peptidyl-prolyl cis-trans isomerase
D0887_RS23080	COG2964	Protein conserved in bacteria
D0887_RS23140	COG0051	transcription antitermination factor activity, RNA binding
D0887_RS23165	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
D0887_RS23180	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
D0887_RS23245	COG0201	protein transport
D0887_RS23270	COG0202	RNA polymerase activity
D0887_RS23285	COG0789	Transcriptional regulator
D0887_RS23290	COG3036	rescue of stalled ribosome
D0887_RS23320	COG0758	DNA mediated transformation
D0887_RS23330	COG0551	DNA topoisomerase type I activity
D0887_RS23350	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D0887_RS23390	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0887_RS23395	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS23400	COG1309	transcriptional regulator
D0887_RS23425	COG4145	pantothenate transmembrane transporter activity
D0887_RS23430	COG3924	membrane
D0887_RS23435	COG0439	Biotin carboxylase
D0887_RS23440	COG0511	ligase activity, forming carbon-carbon bonds
D0887_RS23470	COG2200	EAL domain
D0887_RS23470	COG2199	diguanylate cyclase activity
D0887_RS23480	COG1077	Cell shape determining protein MreB Mrl
D0887_RS23485	COG1792	Involved in formation and maintenance of cell shape
D0887_RS23490	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
D0887_RS23500	COG1530	ribonuclease E activity
D0887_RS23505	COG3164	Protein of unknown function
D0887_RS23510	COG0312	modulator of DNA gyrase
D0887_RS23515	COG0583	DNA-binding transcription factor activity
D0887_RS23530	COG1289	transmembrane transporter activity
D0887_RS23535	COG2732	(Barnase) inhibitor
D0887_RS23560	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0887_RS23565	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0887_RS23570	COG3105	Protein conserved in bacteria
D0887_RS23575	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
D0887_RS23595	COG0625	glutathione transferase activity
D0887_RS23600	COG2969	positive regulation of protein catabolic process
D0887_RS23610	COG0493	'glutamate synthase
D0887_RS23615	COG0069	glutamate synthase activity
D0887_RS23615	COG0070	glutamate synthase
D0887_RS23615	COG0067	glutamate synthase
D0887_RS23625	COG1242	4 iron, 4 sulfur cluster binding
D0887_RS23630	COG2271	Major facilitator Superfamily
D0887_RS23635	COG1063	alcohol dehydrogenase
D0887_RS23640	COG1312	Catalyzes the dehydration of D-mannonate
D0887_RS23645	COG5002	protein histidine kinase activity
D0887_RS23645	COG2198	Histidine kinase
D0887_RS23645	COG0784	Response regulator, receiver
D0887_RS23650	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
D0887_RS23655	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D0887_RS23660	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS23670	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS23675	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D0887_RS23680	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
D0887_RS23685	COG1137	ATPase activity
D0887_RS23690	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
D0887_RS23695	COG3117	lipopolysaccharide transmembrane transporter activity
D0887_RS23700	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
D0887_RS23710	COG0530	calcium, potassium:sodium antiporter activity
D0887_RS23720	COG1127	ABC transporter
D0887_RS23725	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
D0887_RS23730	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D0887_RS23735	COG2854	intermembrane phospholipid transfer
D0887_RS23740	COG3113	response to antibiotic
D0887_RS23745	COG5007	Belongs to the BolA IbaG family
D0887_RS23755	COG3423	Transcriptional regulator
D0887_RS23760	COG0142	geranyltranstransferase activity
D0887_RS23775	COG0697	spore germination
D0887_RS23785	COG2027	D-alanyl-D-alanine carboxypeptidase
D0887_RS23795	COG1534	Rna-binding protein
D0887_RS23810	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
D0887_RS23815	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
D0887_RS23825	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D0887_RS23865	COG0195	Participates in both transcription termination and antitermination
D0887_RS23915	COG0814	amino acid
D0887_RS23920	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0887_RS23925	COG0826	peptidase U32
D0887_RS23930	COG0826	peptidase U32
D0887_RS23935	COG3154	lipid carrier protein
D0887_RS23940	COG3153	acetyltransferase
D0887_RS23955	COG0693	protein deglycase activity
D0887_RS23960	COG0702	epimerase
D0887_RS23965	COG0701	Predicted permease
D0887_RS23970	COG2823	Periplasmic or secreted lipoprotein
D0887_RS23990	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
D0887_RS23995	COG2721	sulfolactate sulfo-lyase activity
D0887_RS24000	COG2271	Major facilitator Superfamily
D0887_RS24010	COG2084	Dehydrogenase
D0887_RS24015	COG1929	Belongs to the glycerate kinase type-1 family
D0887_RS24035	COG1741	Belongs to the pirin family
D0887_RS24040	COG0583	DNA-binding transcription factor activity
D0887_RS24045	COG3152	Membrane
D0887_RS24050	COG0435	Glutathione S-transferase
D0887_RS24055	COG2259	Doxx family
D0887_RS24065	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
D0887_RS24070	COG4575	ribosome binding
D0887_RS24075	COG1422	Protein of unknown function (DUF1090)
D0887_RS24085	COG0586	Pfam SNARE associated Golgi protein
D0887_RS24090	COG2186	Transcriptional regulator
D0887_RS24095	COG2271	Major facilitator Superfamily
D0887_RS24105	COG2721	sulfolactate sulfo-lyase activity
D0887_RS24120	COG0861	Integral membrane protein TerC family
D0887_RS24125	COG0673	inositol 2-dehydrogenase activity
D0887_RS24130	COG1451	nucleotide metabolic process
D0887_RS24150	COG1902	pentaerythritol trinitrate reductase activity
D0887_RS24150	COG0446	pyridine nucleotide-disulphide oxidoreductase
D0887_RS24205	COG1695	Transcriptional regulator
D0887_RS24210	COG2375	cellular response to nickel ion
D0887_RS24225	COG1461	Dihydroxyacetone kinase
D0887_RS24230	COG2376	Dihydroxyacetone kinase
D0887_RS24310	COG3247	response to pH
D0887_RS24320	COG0784	Response regulator, receiver
D0887_RS24320	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS24320	COG2198	Histidine kinase
D0887_RS24320	COG2205	protein histidine kinase activity
D0887_RS24325	COG2197	response regulator
D0887_RS24365	COG3539	Fimbrial protein
D0887_RS24370	COG3121	Chaperone
D0887_RS24375	COG3188	usher protein
D0887_RS24380	COG3539	Fimbrial protein
D0887_RS24385	COG3539	Fimbrial protein
D0887_RS24390	COG3539	Fimbrial protein
D0887_RS24395	COG2200	EAL domain
D0887_RS24400	COG0582	viral genome integration into host DNA
D0887_RS24465	COG4695	Portal protein
D0887_RS24615	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D0887_RS24620	COG0358	DNA primase activity
D0887_RS24625	COG0828	Belongs to the bacterial ribosomal protein bS21 family
D0887_RS24695	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D0887_RS24710	COG4991	sh3 domain protein
D0887_RS24715	COG3025	triphosphatase activity
D0887_RS24735	COG2960	long-chain fatty acid transporting porin activity
D0887_RS24750	COG3384	dioxygenase
D0887_RS24755	COG0754	glutathionylspermidine amidase activity
D0887_RS24770	COG0494	nUDIX hydrolase
D0887_RS24775	COG3151	Protein conserved in bacteria
D0887_RS24780	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D0887_RS24785	COG3150	esterase
D0887_RS24795	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
D0887_RS24800	COG2249	NAD(P)H dehydrogenase (quinone) activity
D0887_RS24805	COG0642	Histidine kinase
D0887_RS24815	COG3111	PFAM Bacterial OB fold (BOF) protein
D0887_RS24820	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
D0887_RS24825	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D0887_RS24830	COG0204	Acyl-transferase
D0887_RS24835	COG2132	Multicopper oxidase
D0887_RS24840	COG1032	radical SAM domain protein
D0887_RS24850	COG0656	L-ascorbic acid biosynthetic process
D0887_RS24855	COG1979	alcohol dehydrogenase
D0887_RS24860	COG2207	Transcriptional regulator
D0887_RS24865	COG0586	Pfam SNARE associated Golgi protein
D0887_RS24870	COG0626	cystathionine gamma-synthase activity
D0887_RS24885	COG0848	biopolymer transport protein
D0887_RS24890	COG2211	Major facilitator Superfamily
D0887_RS24915	COG0625	glutathione transferase activity
D0887_RS24925	COG0754	glutathionylspermidine amidase activity
D0887_RS24930	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0887_RS24950	COG0583	DNA-binding transcription factor activity
D0887_RS24955	COG0626	cystathionine gamma-synthase activity
D0887_RS24970	COG1811	Na channel or pump
D0887_RS24980	COG1982	Orn Lys Arg decarboxylase major
D0887_RS24985	COG2211	Major facilitator Superfamily
D0887_RS25000	COG1194	a g-specific adenine glycosylase
D0887_RS25010	COG3171	Protein conserved in bacteria
D0887_RS25020	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D0887_RS25035	COG0762	integral membrane protein
D0887_RS25040	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
D0887_RS25045	COG2805	Type II/IV secretion system protein
D0887_RS25065	COG0189	ligase activity
D0887_RS25070	COG1385	rRNA (uridine-N3-)-methyltransferase activity
D0887_RS25075	COG2356	endonuclease I
D0887_RS25085	COG2814	Major facilitator Superfamily
D0887_RS25120	COG0501	Belongs to the peptidase M48B family
D0887_RS25125	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D0887_RS25140	COG0191	fructose-bisphosphate aldolase activity
D0887_RS25145	COG0668	transmembrane transport
D0887_RS25155	COG2968	Membrane
D0887_RS25170	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D0887_RS25175	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
D0887_RS25195	COG0006	proline dipeptidase activity
D0887_RS25200	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0887_RS25205	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0887_RS25225	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS25230	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D0887_RS25250	COG2723	6-phospho-beta-galactosidase activity
D0887_RS25255	COG1737	Transcriptional regulator
D0887_RS25265	COG1272	protein, Hemolysin III
D0887_RS25275	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
D0887_RS25285	COG0716	FMN binding
D0887_RS25290	COG4974	Belongs to the 'phage' integrase family
D0887_RS25300	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
D0887_RS25325	COG4942	peptidase
D0887_RS25335	COG4974	Belongs to the 'phage' integrase family
D0887_RS25365	COG2814	Major facilitator Superfamily
D0887_RS25380	COG0667	Aldo Keto reductase
D0887_RS25420	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D0887_RS25425	COG1393	Belongs to the ArsC family
D0887_RS25440	COG1538	Outer membrane efflux protein
D0887_RS25445	COG1289	transmembrane transporter activity
D0887_RS25460	COG3592	Divergent 4Fe-4S mono-cluster
D0887_RS25465	COG2388	GCN5-related N-acetyl-transferase
D0887_RS25475	COG3539	Fimbrial protein
D0887_RS25480	COG3539	Fimbrial protein
D0887_RS25485	COG3539	Fimbrial protein
D0887_RS25490	COG3188	usher protein
D0887_RS25495	COG3121	Chaperone
D0887_RS25500	COG3539	Fimbrial protein
D0887_RS25510	COG4974	Belongs to the 'phage' integrase family
D0887_RS25515	COG0582	viral genome integration into host DNA
D0887_RS25525	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
D0887_RS25530	COG1846	Transcriptional regulator
D0887_RS25535	COG0697	spore germination
D0887_RS25585	COG0667	Aldo Keto reductase
D0887_RS25590	COG0814	amino acid
D0887_RS25605	COG0183	Belongs to the thiolase family
D0887_RS25615	COG0823	Involved in the tonB-independent uptake of proteins
D0887_RS25620	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS25625	COG2814	Major facilitator Superfamily
D0887_RS25655	COG3842	ATPase activity
D0887_RS25660	COG0395	ABC-type sugar transport system, permease component
D0887_RS25665	COG1175	transmembrane transport
D0887_RS25670	COG1917	Cupin 2, conserved barrel domain protein
D0887_RS25675	COG1794	racemase activity, acting on amino acids and derivatives
D0887_RS25680	COG0583	DNA-binding transcription factor activity
D0887_RS25690	COG1609	Transcriptional regulator
D0887_RS25700	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS25705	COG2723	6-phospho-beta-galactosidase activity
D0887_RS25710	COG2186	Transcriptional regulator
D0887_RS25720	COG1609	Transcriptional regulator
D0887_RS25745	COG0667	Aldo Keto reductase
D0887_RS25755	COG0861	Integral membrane protein TerC family
D0887_RS25785	COG2165	general secretion pathway protein
D0887_RS25790	COG4795	General secretion pathway protein
D0887_RS25800	COG4967	type IV pilus modification protein PilV
D0887_RS25805	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
D0887_RS25810	COG1025	Belongs to the peptidase M16 family
D0887_RS25815	COG1074	ATP-dependent DNA helicase activity
D0887_RS25820	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D0887_RS25830	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
D0887_RS25830	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
D0887_RS25835	COG0860	N-Acetylmuramoyl-L-alanine amidase
D0887_RS25840	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
D0887_RS25870	COG4656	Part of a membrane complex involved in electron transport
D0887_RS25875	COG1012	belongs to the aldehyde dehydrogenase family
D0887_RS25875	COG1454	alcohol dehydrogenase
D0887_RS25905	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
D0887_RS26070	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
D0887_RS26075	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
D0887_RS26080	COG2166	iron-sulfur cluster assembly
D0887_RS26085	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D0887_RS26095	COG0583	DNA-binding transcription factor activity
D0887_RS26100	COG2363	Small membrane protein
D0887_RS26110	COG1349	DNA-binding transcription factor activity
D0887_RS26130	COG0738	Major facilitator superfamily
D0887_RS26135	COG0235	Class ii aldolase
D0887_RS26140	COG1454	alcohol dehydrogenase
D0887_RS26155	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D0887_RS26170	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D0887_RS26175	COG2011	ABC-type metal ion transport system permease component
D0887_RS26180	COG1464	Belongs to the NlpA lipoprotein family
D0887_RS26190	COG0477	Major facilitator Superfamily
D0887_RS26200	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0887_RS26205	COG1760	l-serine dehydratase
D0887_RS26210	COG0814	amino acid
D0887_RS26215	COG1611	Belongs to the LOG family
D0887_RS26230	COG3098	single-species biofilm formation
D0887_RS26235	COG0564	pseudouridine synthase activity
D0887_RS26240	COG0716	FMN binding
D0887_RS26245	COG2271	Major facilitator Superfamily
D0887_RS26250	COG4948	Mandelate Racemase Muconate Lactonizing
D0887_RS26255	COG4948	Mandelate Racemase Muconate Lactonizing
D0887_RS26260	COG1929	Belongs to the glycerate kinase type-1 family
D0887_RS26270	COG4999	Histidine kinase
D0887_RS26270	COG3850	Histidine kinase
D0887_RS26270	COG3437	response regulator, receiver
D0887_RS26270	COG2205	protein histidine kinase activity
D0887_RS26280	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D0887_RS26285	COG3956	TIGRFAM MazG family protein
D0887_RS26305	COG0602	queuosine metabolic process
D0887_RS26310	COG0720	synthase
D0887_RS26330	COG2234	aminopeptidase activity
D0887_RS26390	COG4942	peptidase
D0887_RS26390	COG1388	LysM domain
D0887_RS26395	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D0887_RS26420	COG0163	prenyltransferase activity
D0887_RS26425	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
D0887_RS26470	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0887_RS26475	COG4558	Periplasmic binding protein
D0887_RS26480	COG3720	iron ion transport
D0887_RS26500	COG0679	Auxin Efflux Carrier
D0887_RS26515	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0887_RS26520	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0887_RS26525	COG1121	(ABC) transporter
D0887_RS26530	COG0803	Belongs to the bacterial solute-binding protein 9 family
D0887_RS26535	COG1609	Transcriptional regulator
D0887_RS26540	COG1940	carbohydrate kinase activity
D0887_RS26545	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0887_RS26550	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS26555	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS26560	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0887_RS26570	COG4580	involved in the transport of maltose and maltodextrins
D0887_RS26580	COG2723	6-phospho-beta-galactosidase activity
D0887_RS26590	COG0309	Hydrogenase expression formation protein (HypE)
D0887_RS26595	COG0409	Hydrogenase expression formation protein
D0887_RS26600	COG0298	carbon dioxide binding
D0887_RS26605	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
D0887_RS26625	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0887_RS26630	COG0651	ATP synthesis coupled electron transport
D0887_RS26635	COG0650	Formate hydrogenlyase subunit 4
D0887_RS26640	COG3261	NADH dehydrogenase
D0887_RS26640	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
D0887_RS26645	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
D0887_RS26650	COG3260	NADH ubiquinone oxidoreductase 20
D0887_RS26660	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
D0887_RS26670	COG2723	6-phospho-beta-galactosidase activity
D0887_RS26675	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0887_RS26675	COG1263	PTS System
D0887_RS26685	COG1609	Transcriptional regulator
D0887_RS26690	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0887_RS26695	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
D0887_RS26700	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
D0887_RS26730	COG1349	DNA-binding transcription factor activity
D0887_RS26735	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS26740	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS26750	COG3732	PTS system glucitol sorbitol-specific
D0887_RS26755	COG3730	PTS system glucitol sorbitol-specific
D0887_RS26760	COG2951	lytic endotransglycosylase activity
D0887_RS26770	COG1121	(ABC) transporter
D0887_RS26775	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0887_RS26785	COG1546	Belongs to the CinA family
D0887_RS26810	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
D0887_RS26840	COG2823	Periplasmic or secreted lipoprotein
D0887_RS26845	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0887_RS26850	COG1238	metal cluster binding
D0887_RS26870	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
D0887_RS26875	COG2814	Major facilitator Superfamily
D0887_RS26880	COG1566	PFAM secretion protein HlyD family protein
D0887_RS26885	COG1846	Transcriptional regulator
D0887_RS26895	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
D0887_RS26905	COG4176	ABC-type proline glycine betaine transport system permease component
D0887_RS26920	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D0887_RS26930	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D0887_RS26935	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0887_RS26940	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0887_RS26945	COG4575	ribosome binding
D0887_RS26970	COG2916	Histone family protein nucleoid-structuring protein H-NS
D0887_RS26985	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D0887_RS26990	COG0640	Transcriptional regulator
D0887_RS27000	COG0583	DNA-binding transcription factor activity
D0887_RS27005	COG3284	Transcriptional regulator
D0887_RS27015	COG3539	Fimbrial protein
D0887_RS27020	COG3121	Chaperone
D0887_RS27040	COG3188	usher protein
D0887_RS27045	COG3121	Chaperone
D0887_RS27050	COG3539	Fimbrial protein
D0887_RS27055	COG2197	response regulator
D0887_RS27070	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS27080	COG0235	Class ii aldolase
D0887_RS27090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0887_RS27125	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0887_RS27130	COG2207	Transcriptional regulator
D0887_RS27130	COG3708	Transcriptional regulator
D0887_RS27160	COG2867	negative regulation of translational initiation
D0887_RS27175	COG0497	DNA recombination
D0887_RS27195	COG4536	flavin adenine dinucleotide binding
D0887_RS27200	COG4137	Cytochrome C assembly protein
D0887_RS27205	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
D0887_RS27240	COG2885	chlorophyll binding
D0887_RS27245	COG2199	diguanylate cyclase activity
D0887_RS27255	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0887_RS27260	COG0287	Prephenate dehydrogenase
D0887_RS27260	COG1605	Chorismate mutase
D0887_RS27270	COG1605	Chorismate mutase
D0887_RS27270	COG0077	Prephenate dehydratase
D0887_RS27280	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D0887_RS27290	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0887_RS27305	COG0542	response to heat
D0887_RS27330	COG0477	Major facilitator Superfamily
D0887_RS27335	COG5544	Lipoprotein
D0887_RS27340	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D0887_RS27350	COG3148	PFAM DTW domain containing protein
D0887_RS27355	COG3118	belongs to the thioredoxin family
D0887_RS27360	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0887_RS27375	COG0513	Belongs to the DEAD box helicase family
D0887_RS27385	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
D0887_RS27395	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
D0887_RS27400	COG3026	antisigma factor binding
D0887_RS27405	COG3086	response to oxidative stress
D0887_RS27415	COG0681	Belongs to the peptidase S26 family
D0887_RS27435	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
D0887_RS27445	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0887_RS27450	COG1737	Transcriptional regulator
D0887_RS27455	COG0560	Phosphoserine phosphatase
D0887_RS27470	COG0047	phosphoribosylformylglycinamidine synthase activity
D0887_RS27470	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
D0887_RS27475	COG2205	protein histidine kinase activity
D0887_RS27480	COG3170	Tfp pilus assembly protein FimV
D0887_RS27485	COG2204	response regulator
D0887_RS27490	COG0347	Belongs to the P(II) protein family
D0887_RS27495	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0887_RS27495	COG1017	nitric oxide dioxygenase activity
D0887_RS27510	COG2259	Doxx family
D0887_RS27525	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
D0887_RS27530	COG3867	Arabinogalactan endo-beta-1,4-galactanase
D0887_RS27550	COG1940	carbohydrate kinase activity
D0887_RS27555	COG0457	Tetratricopeptide repeat
D0887_RS27560	COG0477	Major facilitator Superfamily
D0887_RS27560	COG2814	Major facilitator Superfamily
D0887_RS27565	COG2017	converts alpha-aldose to the beta-anomer
D0887_RS27570	COG2814	Major facilitator Superfamily
D0887_RS27575	COG3711	transcriptional antiterminator
D0887_RS27580	COG3683	transport system, periplasmic component
D0887_RS27585	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
D0887_RS27615	COG0822	iron-sulfur transferase activity
D0887_RS27635	COG0633	Ferredoxin
D0887_RS27640	COG2975	iron-sulfur cluster assembly
D0887_RS27660	COG2897	thiosulfate sulfurtransferase activity
D0887_RS27665	COG2373	Large extracellular alpha-helical protein
D0887_RS27670	COG4953	penicillin-binding protein 1C
D0887_RS27705	COG2976	Protein conserved in bacteria
D0887_RS27745	COG1645	bacterial-type flagellum-dependent swarming motility
D0887_RS27755	COG0516	GMP reductase activity
D0887_RS27755	COG0517	IMP dehydrogenase activity
D0887_RS27765	COG3119	arylsulfatase activity
D0887_RS27770	COG0641	radical SAM
D0887_RS27790	COG2200	EAL domain
D0887_RS27805	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
D0887_RS27820	COG2723	6-phospho-beta-galactosidase activity
D0887_RS27830	COG2233	PERMEase
D0887_RS27875	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D0887_RS27905	COG2801	Transposase and inactivated derivatives
D0887_RS27950	COG0740	serine-type endopeptidase activity
D0887_RS27960	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0887_RS28000	COG2801	Transposase and inactivated derivatives
D0887_RS28015	COG2801	Transposase and inactivated derivatives
D0887_RS28025	COG0456	acetyltransferase
D0887_RS28025	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
D0887_RS28030	COG2801	Transposase and inactivated derivatives
D0887_RS28035	COG1349	DNA-binding transcription factor activity
D0887_RS28040	COG0698	ribose 5-phosphate isomerase
D0887_RS28045	COG3775	system Galactitol-specific IIC component
D0887_RS28050	COG3414	Phosphotransferase system galactitol-specific IIB component
D0887_RS28055	COG2213	PTS system mannitol-specific
D0887_RS28055	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0887_RS28060	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
D0887_RS28065	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
D0887_RS28085	COG1028	Short-chain dehydrogenase reductase Sdr
D0887_RS28090	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
D0887_RS28095	COG1902	pentaerythritol trinitrate reductase activity
D0887_RS28100	COG1881	PFAM PEBP family protein
D0887_RS28105	COG2207	Transcriptional regulator
D0887_RS28110	COG3118	belongs to the thioredoxin family
D0887_RS28115	COG1486	melibiose metabolic process
D0887_RS28120	COG0583	DNA-binding transcription factor activity
D0887_RS28125	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0887_RS28185	COG1132	(ABC) transporter
D0887_RS28190	COG1132	(ABC) transporter
D0887_RS28190	COG2375	cellular response to nickel ion
D0887_RS28245	COG0740	serine-type endopeptidase activity
D0887_RS28265	COG1566	PFAM secretion protein HlyD family protein
D0887_RS28280	COG2207	Transcriptional regulator
D0887_RS28290	COG2135	peptidase activity
D0887_RS28340	COG3429	Glucose-6-phosphate dehydrogenase subunit
D0887_RS28340	COG3409	Peptidoglycan-binding domain 1 protein
D0887_RS28395	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
D0887_RS28645	COG1475	DNA binding
D0887_RS28645	COG1475	DNA binding
D0887_RS28730	COG3344	reverse transcriptase
D0887_RS28840	COG0616	signal peptide processing
D0887_RS28960	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
D0887_RS29065	COG0583	DNA-binding transcription factor activity
D0887_RS29075	COG0459	protein refolding
D0887_RS29215	COG1192	Involved in chromosome partitioning
D0887_RS29300	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D0887_RS29390	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0887_RS29415	COG5001	Diguanylate cyclase
D0887_RS29470	COG4974	Belongs to the 'phage' integrase family
D0887_RS29585	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
D0887_RS29595	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D0887_RS29680	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D0887_RS29690	COG1702	phosphate starvation-inducible protein PhoH
D0887_RS29830	COG3941	tape measure
D0887_RS29920	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D0887_RS29925	COG1475	DNA binding
D0887_RS29930	COG1475	DNA binding
D0887_RS30075	COG0328	RNA-DNA hybrid ribonuclease activity
D0887_RS30095	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D0887_RS30105	COG0237	dephospho-CoA kinase activity
D0887_RS30120	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
D0887_RS30130	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D0887_RS30135	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D0887_RS30215	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
D0887_RS30220	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
D0887_RS30225	COG0745	RESPONSE REGULATOR receiver
D0887_RS30230	COG5002	protein histidine kinase activity
D0887_RS30405	COG1475	DNA binding
D0887_RS30735	COG0583	DNA-binding transcription factor activity
D0887_RS30770	COG3344	reverse transcriptase
D0887_RS30870	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D0887_RS30900	COG2003	Belongs to the UPF0758 family
D0887_RS31130	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D0887_RS31300	COG0616	signal peptide processing
D0887_RS31315	COG1802	Transcriptional regulator
D0887_RS31315	COG4626	Terminase