locus-tag	class	description
F3090_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
F3090_RS00020	COG0187	DNA topoisomerase II activity
F3090_RS00025	COG0561	phosphatase activity
F3090_RS00040	COG2186	Transcriptional regulator
F3090_RS00045	COG3734	2-keto-3-deoxy-galactonokinase
F3090_RS00050	COG0800	Aldolase
F3090_RS00060	COG2271	Major facilitator Superfamily
F3090_RS00065	COG0823	Involved in the tonB-independent uptake of proteins
F3090_RS00070	COG5645	(Lipo)protein
F3090_RS00085	COG3645	SOS response
F3090_RS00095	COG2188	Transcriptional regulator
F3090_RS00110	COG2149	membrane
F3090_RS00130	COG2610	gluconate transmembrane transporter activity
F3090_RS00140	COG0583	DNA-binding transcription factor activity
F3090_RS00145	COG2814	Major facilitator Superfamily
F3090_RS00175	COG0028	Belongs to the TPP enzyme family
F3090_RS00180	COG0440	acetolactate synthase activity
F3090_RS00185	COG2197	response regulator
F3090_RS00195	COG2271	Major facilitator Superfamily
F3090_RS00245	COG2188	Transcriptional regulator
F3090_RS00270	COG4580	involved in the transport of maltose and maltodextrins
F3090_RS00275	COG1447	Phosphotransferase system cellobiose-specific component IIA
F3090_RS00280	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS00280	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS00290	COG1609	Transcriptional regulator
F3090_RS00300	COG3384	dioxygenase
F3090_RS00305	COG0583	DNA-binding transcription factor activity
F3090_RS00310	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
F3090_RS00315	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
F3090_RS00320	COG2828	Protein conserved in bacteria
F3090_RS00335	COG0697	spore germination
F3090_RS00340	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
F3090_RS00340	COG1263	PTS System
F3090_RS00350	COG2814	Major facilitator Superfamily
F3090_RS00360	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
F3090_RS00395	COG0583	DNA-binding transcription factor activity
F3090_RS00420	COG1464	Belongs to the NlpA lipoprotein family
F3090_RS00435	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
F3090_RS00445	COG1064	alcohol dehydrogenase
F3090_RS00475	COG2211	Major facilitator Superfamily
F3090_RS00480	COG1501	Belongs to the glycosyl hydrolase 31 family
F3090_RS00490	COG1486	melibiose metabolic process
F3090_RS00495	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
F3090_RS00495	COG1263	PTS System
F3090_RS00500	COG2982	Protein involved in outer membrane biogenesis
F3090_RS00505	COG2233	PERMEase
F3090_RS00510	COG0786	glutamate:sodium symporter activity
F3090_RS00530	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
F3090_RS00555	COG3152	Membrane
F3090_RS00565	COG1494	fructose-1,6-bisphosphatase
F3090_RS00570	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
F3090_RS00575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
F3090_RS00580	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
F3090_RS00600	COG2860	membrane
F3090_RS00610	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
F3090_RS00610	COG2169	Transcriptional regulator
F3090_RS00615	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
F3090_RS00635	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
F3090_RS00645	COG3039	Transposase
F3090_RS00675	COG1561	YicC-like family, N-terminal region
F3090_RS00695	COG1131	(ABC) transporter
F3090_RS00700	COG0842	Transport permease protein
F3090_RS00730	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
F3090_RS00765	COG1519	Transferase
F3090_RS00770	COG1216	Glycosyl transferase, family 2
F3090_RS00775	COG0438	transferase activity, transferring glycosyl groups
F3090_RS00785	COG0859	PFAM glycosyl transferase family 9
F3090_RS00810	COG0859	PFAM glycosyl transferase family 9
F3090_RS00825	COG0156	8-amino-7-oxononanoate synthase activity
F3090_RS00835	COG0463	Glycosyl transferase, family 2
F3090_RS00840	COG2861	carbohydrate metabolic process
F3090_RS00845	COG4942	peptidase
F3090_RS00855	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
F3090_RS00860	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
F3090_RS00880	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
F3090_RS00890	COG2186	Transcriptional regulator
F3090_RS00910	COG3722	fumarate hydratase activity
F3090_RS00930	COG1566	PFAM secretion protein HlyD family protein
F3090_RS00935	COG0625	glutathione transferase activity
F3090_RS00945	COG3276	selenocysteine insertion sequence binding
F3090_RS00950	COG1414	Transcriptional regulator
F3090_RS00955	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
F3090_RS00960	COG3977	Valine--pyruvate aminotransferase
F3090_RS00965	COG0366	Alpha amylase catalytic
F3090_RS00970	COG2992	FlgJ-related protein
F3090_RS00975	COG1609	Transcriptional regulator
F3090_RS00975	COG2207	Transcriptional regulator
F3090_RS00980	COG4214	carbohydrate transport
F3090_RS00990	COG4213	ABC transporter substrate-binding protein
F3090_RS01005	COG4682	membrane
F3090_RS01010	COG4682	membrane
F3090_RS01015	COG3274	enterobacterial common antigen metabolic process
F3090_RS01045	COG1278	Cold shock
F3090_RS01050	COG2944	sequence-specific DNA binding
F3090_RS01055	COG2814	Major facilitator Superfamily
F3090_RS01075	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
F3090_RS01085	COG1609	Transcriptional regulator
F3090_RS01090	COG2885	chlorophyll binding
F3090_RS01095	COG0243	molybdopterin cofactor binding
F3090_RS01100	COG0456	acetyltransferase
F3090_RS01105	COG2818	Glycosylase
F3090_RS01115	COG2223	nitrite transmembrane transporter activity
F3090_RS01150	COG0747	negative chemotaxis
F3090_RS01155	COG0601	transmembrane transport
F3090_RS01160	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
F3090_RS01165	COG0444	Belongs to the ABC transporter superfamily
F3090_RS01170	COG4608	Belongs to the ABC transporter superfamily
F3090_RS01185	COG2894	cell division
F3090_RS01195	COG1215	transferase activity, transferring glycosyl groups
F3090_RS01200	COG0457	Tetratricopeptide repeat
F3090_RS01215	COG2194	sulfuric ester hydrolase activity
F3090_RS01245	COG1215	transferase activity, transferring glycosyl groups
F3090_RS01250	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
F3090_RS01255	COG3118	belongs to the thioredoxin family
F3090_RS01255	COG0457	Tetratricopeptide repeat
F3090_RS01260	COG2200	EAL domain
F3090_RS01260	COG2199	diguanylate cyclase activity
F3090_RS01270	COG0612	Peptidase, M16
F3090_RS01280	COG2982	Protein involved in outer membrane biogenesis
F3090_RS01285	COG0477	Major facilitator Superfamily
F3090_RS01290	COG1295	ribonuclease BN
F3090_RS01295	COG0583	DNA-binding transcription factor activity
F3090_RS01300	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS01305	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
F3090_RS01315	COG1454	alcohol dehydrogenase
F3090_RS01325	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
F3090_RS01330	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
F3090_RS01335	COG0671	phosphoesterase, PA-phosphatase related
F3090_RS01355	COG0589	response to stress
F3090_RS01365	COG0306	phosphate transporter
F3090_RS01370	COG2081	HI0933 family
F3090_RS01395	COG1124	(ABC) transporter
F3090_RS01405	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
F3090_RS01410	COG0601	transmembrane transport
F3090_RS01425	COG3479	Phenolic acid decarboxylase
F3090_RS01465	COG0628	permease
F3090_RS01470	COG0477	Major facilitator Superfamily
F3090_RS01480	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
F3090_RS01495	COG3714	YhhN family
F3090_RS01505	COG3776	membrane
F3090_RS01510	COG0742	ribosomal rna small subunit methyltransferase
F3090_RS01515	COG0552	protein localization to endoplasmic reticulum
F3090_RS01520	COG2884	Cell division ATP-binding protein ftsE
F3090_RS01525	COG2177	Part of the ABC transporter FtsEX involved in
F3090_RS01540	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
F3090_RS01550	COG0683	leucine binding
F3090_RS01560	COG0683	leucine binding
F3090_RS01565	COG0559	Belongs to the binding-protein-dependent transport system permease family
F3090_RS01615	COG0584	glycerophosphoryl diester phosphodiesterase
F3090_RS01625	COG0405	Gamma-glutamyltransferase
F3090_RS01630	COG1247	-acetyltransferase
F3090_RS01640	COG0673	inositol 2-dehydrogenase activity
F3090_RS01645	COG1741	Belongs to the pirin family
F3090_RS01650	COG1609	Transcriptional regulator
F3090_RS01655	COG3265	gluconokinase activity
F3090_RS01660	COG2610	gluconate transmembrane transporter activity
F3090_RS01670	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
F3090_RS01695	COG0058	SHG alpha-glucan phosphorylase activity
F3090_RS01710	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
F3090_RS01725	COG1349	DNA-binding transcription factor activity
F3090_RS01735	COG0058	SHG alpha-glucan phosphorylase activity
F3090_RS01740	COG1640	4-alpha-glucanotransferase
F3090_RS01745	COG2610	gluconate transmembrane transporter activity
F3090_RS01755	COG1040	competence protein
F3090_RS01780	COG1918	ferrous iron import across plasma membrane
F3090_RS01785	COG2183	response to ionizing radiation
F3090_RS01790	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
F3090_RS01815	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
F3090_RS01820	COG1011	Hydrolase
F3090_RS01830	COG0494	nUDIX hydrolase
F3090_RS01835	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
F3090_RS01860	COG4796	Type ii and iii secretion system protein
F3090_RS01875	COG3266	domain, Protein
F3090_RS01880	COG0338	D12 class N6 adenine-specific DNA methyltransferase
F3090_RS01885	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
F3090_RS01910	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
F3090_RS01915	COG0402	S-adenosylhomocysteine deaminase activity
F3090_RS01920	COG0738	Major facilitator superfamily
F3090_RS01945	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
F3090_RS01950	COG1289	transmembrane transporter activity
F3090_RS01960	COG1765	OsmC-like protein
F3090_RS01965	COG3954	Phosphoribulokinase
F3090_RS01975	COG0429	hydrolase of the alpha beta-hydrolase fold
F3090_RS01980	COG0488	(ABC) transporter
F3090_RS01995	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
F3090_RS02000	COG1047	Peptidyl-prolyl cis-trans
F3090_RS02010	COG0545	Peptidyl-prolyl cis-trans isomerase
F3090_RS02015	COG2964	Protein conserved in bacteria
F3090_RS02070	COG0051	transcription antitermination factor activity, RNA binding
F3090_RS02095	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
F3090_RS02110	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
F3090_RS02175	COG0201	protein transport
F3090_RS02200	COG0202	RNA polymerase activity
F3090_RS02215	COG0789	Transcriptional regulator
F3090_RS02220	COG3036	rescue of stalled ribosome
F3090_RS02250	COG0758	DNA mediated transformation
F3090_RS02260	COG0551	DNA topoisomerase type I activity
F3090_RS02280	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
F3090_RS02320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS02325	COG1309	transcriptional regulator
F3090_RS02345	COG4145	pantothenate transmembrane transporter activity
F3090_RS02350	COG3924	membrane
F3090_RS02355	COG0439	Biotin carboxylase
F3090_RS02360	COG0511	ligase activity, forming carbon-carbon bonds
F3090_RS02385	COG2200	EAL domain
F3090_RS02385	COG2199	diguanylate cyclase activity
F3090_RS02390	COG1077	Cell shape determining protein MreB Mrl
F3090_RS02395	COG1792	Involved in formation and maintenance of cell shape
F3090_RS02400	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
F3090_RS02410	COG1530	ribonuclease E activity
F3090_RS02415	COG3164	Protein of unknown function
F3090_RS02420	COG0312	modulator of DNA gyrase
F3090_RS02425	COG0583	DNA-binding transcription factor activity
F3090_RS02440	COG1289	transmembrane transporter activity
F3090_RS02445	COG2732	(Barnase) inhibitor
F3090_RS02470	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
F3090_RS02475	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
F3090_RS02480	COG3105	Protein conserved in bacteria
F3090_RS02485	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
F3090_RS02500	COG0625	glutathione transferase activity
F3090_RS02505	COG2969	positive regulation of protein catabolic process
F3090_RS02515	COG0493	'glutamate synthase
F3090_RS02520	COG0067	glutamate synthase
F3090_RS02520	COG0070	glutamate synthase
F3090_RS02520	COG0069	glutamate synthase activity
F3090_RS02525	COG1242	4 iron, 4 sulfur cluster binding
F3090_RS02530	COG2271	Major facilitator Superfamily
F3090_RS02535	COG1063	alcohol dehydrogenase
F3090_RS02540	COG1312	Catalyzes the dehydration of D-mannonate
F3090_RS02545	COG0784	Response regulator, receiver
F3090_RS02545	COG2198	Histidine kinase
F3090_RS02545	COG5002	protein histidine kinase activity
F3090_RS02550	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
F3090_RS02555	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
F3090_RS02560	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS02570	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS02575	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
F3090_RS02580	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
F3090_RS02585	COG1137	ATPase activity
F3090_RS02590	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
F3090_RS02595	COG3117	lipopolysaccharide transmembrane transporter activity
F3090_RS02600	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
F3090_RS02610	COG0530	calcium, potassium:sodium antiporter activity
F3090_RS02615	COG1127	ABC transporter
F3090_RS02620	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
F3090_RS02625	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
F3090_RS02630	COG2854	intermembrane phospholipid transfer
F3090_RS02635	COG3113	response to antibiotic
F3090_RS02640	COG5007	Belongs to the BolA IbaG family
F3090_RS02650	COG3423	Transcriptional regulator
F3090_RS02655	COG0142	geranyltranstransferase activity
F3090_RS02670	COG0697	spore germination
F3090_RS02680	COG2027	D-alanyl-D-alanine carboxypeptidase
F3090_RS02690	COG1534	Rna-binding protein
F3090_RS02700	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
F3090_RS02705	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
F3090_RS02715	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
F3090_RS02755	COG0195	Participates in both transcription termination and antitermination
F3090_RS02800	COG0814	amino acid
F3090_RS02825	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
F3090_RS02870	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
F3090_RS02875	COG0826	peptidase U32
F3090_RS02880	COG0826	peptidase U32
F3090_RS02885	COG3154	lipid carrier protein
F3090_RS02890	COG3153	acetyltransferase
F3090_RS02905	COG0693	protein deglycase activity
F3090_RS02910	COG0702	epimerase
F3090_RS02915	COG0701	Predicted permease
F3090_RS02920	COG2823	Periplasmic or secreted lipoprotein
F3090_RS02940	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
F3090_RS02945	COG2721	sulfolactate sulfo-lyase activity
F3090_RS02950	COG2271	Major facilitator Superfamily
F3090_RS02960	COG2084	Dehydrogenase
F3090_RS02965	COG1929	Belongs to the glycerate kinase type-1 family
F3090_RS02990	COG1741	Belongs to the pirin family
F3090_RS02995	COG0583	DNA-binding transcription factor activity
F3090_RS03000	COG3152	Membrane
F3090_RS03005	COG0435	Glutathione S-transferase
F3090_RS03010	COG2259	Doxx family
F3090_RS03020	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
F3090_RS03025	COG4575	ribosome binding
F3090_RS03030	COG1422	Protein of unknown function (DUF1090)
F3090_RS03040	COG0586	Pfam SNARE associated Golgi protein
F3090_RS03045	COG2186	Transcriptional regulator
F3090_RS03050	COG2271	Major facilitator Superfamily
F3090_RS03060	COG2721	sulfolactate sulfo-lyase activity
F3090_RS03075	COG0861	Integral membrane protein TerC family
F3090_RS03080	COG0673	inositol 2-dehydrogenase activity
F3090_RS03085	COG1451	nucleotide metabolic process
F3090_RS03105	COG0446	pyridine nucleotide-disulphide oxidoreductase
F3090_RS03105	COG1902	pentaerythritol trinitrate reductase activity
F3090_RS03155	COG1695	Transcriptional regulator
F3090_RS03160	COG2375	cellular response to nickel ion
F3090_RS03175	COG1461	Dihydroxyacetone kinase
F3090_RS03180	COG2376	Dihydroxyacetone kinase
F3090_RS03250	COG3247	response to pH
F3090_RS03260	COG0784	Response regulator, receiver
F3090_RS03260	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS03260	COG2198	Histidine kinase
F3090_RS03260	COG2205	protein histidine kinase activity
F3090_RS03265	COG2197	response regulator
F3090_RS03290	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
F3090_RS03295	COG0358	DNA primase activity
F3090_RS03300	COG0828	Belongs to the bacterial ribosomal protein bS21 family
F3090_RS03365	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
F3090_RS03380	COG4991	sh3 domain protein
F3090_RS03385	COG3025	triphosphatase activity
F3090_RS03410	COG2960	long-chain fatty acid transporting porin activity
F3090_RS03425	COG3384	dioxygenase
F3090_RS03430	COG0754	glutathionylspermidine amidase activity
F3090_RS03445	COG0494	nUDIX hydrolase
F3090_RS03450	COG3151	Protein conserved in bacteria
F3090_RS03455	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
F3090_RS03460	COG3150	esterase
F3090_RS03470	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
F3090_RS03475	COG2249	NAD(P)H dehydrogenase (quinone) activity
F3090_RS03480	COG0642	Histidine kinase
F3090_RS03490	COG3111	PFAM Bacterial OB fold (BOF) protein
F3090_RS03495	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
F3090_RS03500	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
F3090_RS03505	COG0204	Acyl-transferase
F3090_RS03510	COG2132	Multicopper oxidase
F3090_RS03515	COG1032	radical SAM domain protein
F3090_RS03525	COG0656	L-ascorbic acid biosynthetic process
F3090_RS03535	COG3436	PFAM IS66 Orf2 family protein
F3090_RS03540	COG4372	Transposase
F3090_RS03545	COG1979	alcohol dehydrogenase
F3090_RS03550	COG2207	Transcriptional regulator
F3090_RS03555	COG0586	Pfam SNARE associated Golgi protein
F3090_RS03560	COG0626	cystathionine gamma-synthase activity
F3090_RS03570	COG0848	biopolymer transport protein
F3090_RS03575	COG2211	Major facilitator Superfamily
F3090_RS03600	COG0625	glutathione transferase activity
F3090_RS03615	COG0754	glutathionylspermidine amidase activity
F3090_RS03620	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
F3090_RS03640	COG0583	DNA-binding transcription factor activity
F3090_RS03645	COG0626	cystathionine gamma-synthase activity
F3090_RS03695	COG3423	Transcriptional regulator
F3090_RS03705	COG0582	viral genome integration into host DNA
F3090_RS03715	COG1811	Na channel or pump
F3090_RS03720	COG1982	Orn Lys Arg decarboxylase major
F3090_RS03725	COG2211	Major facilitator Superfamily
F3090_RS03740	COG1194	a g-specific adenine glycosylase
F3090_RS03750	COG3171	Protein conserved in bacteria
F3090_RS03760	COG0635	Involved in the biosynthesis of porphyrin-containing compound
F3090_RS03775	COG0762	integral membrane protein
F3090_RS03780	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
F3090_RS03785	COG2805	Type II/IV secretion system protein
F3090_RS03805	COG0189	ligase activity
F3090_RS03810	COG1385	rRNA (uridine-N3-)-methyltransferase activity
F3090_RS03815	COG2356	endonuclease I
F3090_RS03825	COG2814	Major facilitator Superfamily
F3090_RS03860	COG0501	Belongs to the peptidase M48B family
F3090_RS03865	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
F3090_RS03880	COG0191	fructose-bisphosphate aldolase activity
F3090_RS03885	COG0668	transmembrane transport
F3090_RS03895	COG2968	Membrane
F3090_RS03910	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
F3090_RS03915	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
F3090_RS03935	COG0006	proline dipeptidase activity
F3090_RS03940	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
F3090_RS03945	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
F3090_RS03965	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS03970	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
F3090_RS03990	COG2723	6-phospho-beta-galactosidase activity
F3090_RS03995	COG1737	Transcriptional regulator
F3090_RS04005	COG1272	protein, Hemolysin III
F3090_RS04015	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
F3090_RS04025	COG0716	FMN binding
F3090_RS04030	COG4974	Belongs to the 'phage' integrase family
F3090_RS04040	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
F3090_RS04060	COG4942	peptidase
F3090_RS04070	COG2814	Major facilitator Superfamily
F3090_RS04085	COG0667	Aldo Keto reductase
F3090_RS04120	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
F3090_RS04125	COG1393	Belongs to the ArsC family
F3090_RS04140	COG1538	Outer membrane efflux protein
F3090_RS04145	COG1289	transmembrane transporter activity
F3090_RS04160	COG3592	Divergent 4Fe-4S mono-cluster
F3090_RS04165	COG2388	GCN5-related N-acetyl-transferase
F3090_RS04175	COG3539	Fimbrial protein
F3090_RS04180	COG3539	Fimbrial protein
F3090_RS04185	COG3539	Fimbrial protein
F3090_RS04190	COG3188	usher protein
F3090_RS04195	COG3121	Chaperone
F3090_RS04200	COG3539	Fimbrial protein
F3090_RS04210	COG4974	Belongs to the 'phage' integrase family
F3090_RS04215	COG0582	viral genome integration into host DNA
F3090_RS04220	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
F3090_RS04225	COG1846	Transcriptional regulator
F3090_RS04230	COG0697	spore germination
F3090_RS04280	COG0667	Aldo Keto reductase
F3090_RS04285	COG0814	amino acid
F3090_RS04300	COG0183	Belongs to the thiolase family
F3090_RS04310	COG0823	Involved in the tonB-independent uptake of proteins
F3090_RS04315	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS04320	COG2814	Major facilitator Superfamily
F3090_RS04355	COG3842	ATPase activity
F3090_RS04360	COG0395	ABC-type sugar transport system, permease component
F3090_RS04365	COG1175	transmembrane transport
F3090_RS04370	COG1917	Cupin 2, conserved barrel domain protein
F3090_RS04375	COG1794	racemase activity, acting on amino acids and derivatives
F3090_RS04380	COG0583	DNA-binding transcription factor activity
F3090_RS04390	COG1609	Transcriptional regulator
F3090_RS04395	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS04400	COG2723	6-phospho-beta-galactosidase activity
F3090_RS04405	COG2186	Transcriptional regulator
F3090_RS04415	COG1609	Transcriptional regulator
F3090_RS04435	COG0667	Aldo Keto reductase
F3090_RS04445	COG0861	Integral membrane protein TerC family
F3090_RS04480	COG2165	general secretion pathway protein
F3090_RS04485	COG4795	General secretion pathway protein
F3090_RS04495	COG4967	type IV pilus modification protein PilV
F3090_RS04500	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
F3090_RS04505	COG1025	Belongs to the peptidase M16 family
F3090_RS04510	COG1074	ATP-dependent DNA helicase activity
F3090_RS04515	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
F3090_RS04525	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
F3090_RS04525	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
F3090_RS04530	COG0860	N-Acetylmuramoyl-L-alanine amidase
F3090_RS04535	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
F3090_RS04565	COG4656	Part of a membrane complex involved in electron transport
F3090_RS04570	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS04570	COG1454	alcohol dehydrogenase
F3090_RS04600	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
F3090_RS04765	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
F3090_RS04770	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
F3090_RS04775	COG2166	iron-sulfur cluster assembly
F3090_RS04780	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
F3090_RS04790	COG0583	DNA-binding transcription factor activity
F3090_RS04795	COG2363	Small membrane protein
F3090_RS04805	COG1349	DNA-binding transcription factor activity
F3090_RS04825	COG0738	Major facilitator superfamily
F3090_RS04830	COG0235	Class ii aldolase
F3090_RS04835	COG1454	alcohol dehydrogenase
F3090_RS04855	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
F3090_RS04870	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
F3090_RS04875	COG2011	ABC-type metal ion transport system permease component
F3090_RS04880	COG1464	Belongs to the NlpA lipoprotein family
F3090_RS04885	COG0477	Major facilitator Superfamily
F3090_RS04895	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
F3090_RS04900	COG1760	l-serine dehydratase
F3090_RS04905	COG0814	amino acid
F3090_RS04910	COG1611	Belongs to the LOG family
F3090_RS04925	COG3098	single-species biofilm formation
F3090_RS04930	COG0564	pseudouridine synthase activity
F3090_RS04935	COG0716	FMN binding
F3090_RS04940	COG2271	Major facilitator Superfamily
F3090_RS04945	COG4948	Mandelate Racemase Muconate Lactonizing
F3090_RS04950	COG4948	Mandelate Racemase Muconate Lactonizing
F3090_RS04955	COG1929	Belongs to the glycerate kinase type-1 family
F3090_RS04960	COG4999	Histidine kinase
F3090_RS04960	COG3850	Histidine kinase
F3090_RS04960	COG3437	response regulator, receiver
F3090_RS04960	COG2205	protein histidine kinase activity
F3090_RS04970	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
F3090_RS04975	COG3956	TIGRFAM MazG family protein
F3090_RS04995	COG0602	queuosine metabolic process
F3090_RS05000	COG0720	synthase
F3090_RS05020	COG1203	CRISPR-associated helicase, Cas3
F3090_RS05035	COG1857	crispr-associated protein
F3090_RS05050	COG1518	maintenance of DNA repeat elements
F3090_RS05055	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
F3090_RS05070	COG2234	aminopeptidase activity
F3090_RS05130	COG4942	peptidase
F3090_RS05130	COG1388	LysM domain
F3090_RS05135	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
F3090_RS05160	COG0163	prenyltransferase activity
F3090_RS05165	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
F3090_RS05205	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS05210	COG4558	Periplasmic binding protein
F3090_RS05215	COG3720	iron ion transport
F3090_RS05235	COG0679	Auxin Efflux Carrier
F3090_RS05250	COG1108	ABC-type Mn2 Zn2 transport systems permease components
F3090_RS05255	COG1108	ABC-type Mn2 Zn2 transport systems permease components
F3090_RS05260	COG1121	(ABC) transporter
F3090_RS05265	COG0803	Belongs to the bacterial solute-binding protein 9 family
F3090_RS05270	COG1609	Transcriptional regulator
F3090_RS05275	COG1940	carbohydrate kinase activity
F3090_RS05280	COG1447	Phosphotransferase system cellobiose-specific component IIA
F3090_RS05285	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS05290	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS05295	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS05300	COG4580	involved in the transport of maltose and maltodextrins
F3090_RS05310	COG2723	6-phospho-beta-galactosidase activity
F3090_RS05320	COG0309	Hydrogenase expression formation protein (HypE)
F3090_RS05325	COG0409	Hydrogenase expression formation protein
F3090_RS05330	COG0298	carbon dioxide binding
F3090_RS05335	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
F3090_RS05350	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
F3090_RS05355	COG0651	ATP synthesis coupled electron transport
F3090_RS05360	COG0650	Formate hydrogenlyase subunit 4
F3090_RS05365	COG3261	NADH dehydrogenase
F3090_RS05365	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
F3090_RS05370	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
F3090_RS05375	COG3260	NADH ubiquinone oxidoreductase 20
F3090_RS05385	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
F3090_RS05395	COG2723	6-phospho-beta-galactosidase activity
F3090_RS05400	COG1263	PTS System
F3090_RS05400	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
F3090_RS05405	COG1609	Transcriptional regulator
F3090_RS05410	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
F3090_RS05415	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
F3090_RS05420	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
F3090_RS05445	COG1349	DNA-binding transcription factor activity
F3090_RS05450	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS05455	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS05465	COG3732	PTS system glucitol sorbitol-specific
F3090_RS05470	COG3730	PTS system glucitol sorbitol-specific
F3090_RS05475	COG2951	lytic endotransglycosylase activity
F3090_RS05480	COG1121	(ABC) transporter
F3090_RS05485	COG1108	ABC-type Mn2 Zn2 transport systems permease components
F3090_RS05495	COG1546	Belongs to the CinA family
F3090_RS05515	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
F3090_RS05545	COG2823	Periplasmic or secreted lipoprotein
F3090_RS05550	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
F3090_RS05555	COG1238	metal cluster binding
F3090_RS05575	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
F3090_RS05580	COG2814	Major facilitator Superfamily
F3090_RS05585	COG1566	PFAM secretion protein HlyD family protein
F3090_RS05590	COG1846	Transcriptional regulator
F3090_RS05600	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
F3090_RS05610	COG4176	ABC-type proline glycine betaine transport system permease component
F3090_RS05625	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
F3090_RS05635	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
F3090_RS05640	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
F3090_RS05645	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
F3090_RS05650	COG4575	ribosome binding
F3090_RS05665	COG2916	Histone family protein nucleoid-structuring protein H-NS
F3090_RS05680	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
F3090_RS05685	COG0640	Transcriptional regulator
F3090_RS05695	COG0583	DNA-binding transcription factor activity
F3090_RS05700	COG3284	Transcriptional regulator
F3090_RS05710	COG3539	Fimbrial protein
F3090_RS05715	COG3121	Chaperone
F3090_RS05750	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS05760	COG0235	Class ii aldolase
F3090_RS05770	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS05805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS05810	COG3708	Transcriptional regulator
F3090_RS05810	COG2207	Transcriptional regulator
F3090_RS05870	COG0582	viral genome integration into host DNA
F3090_RS05880	COG4974	Belongs to the 'phage' integrase family
F3090_RS05915	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
F3090_RS05930	COG3344	reverse transcriptase
F3090_RS05960	COG4695	Portal protein
F3090_RS06120	COG2867	negative regulation of translational initiation
F3090_RS06135	COG0497	DNA recombination
F3090_RS06150	COG4536	flavin adenine dinucleotide binding
F3090_RS06155	COG4137	Cytochrome C assembly protein
F3090_RS06160	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
F3090_RS06320	COG4695	Portal protein
F3090_RS06350	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
F3090_RS06405	COG2885	chlorophyll binding
F3090_RS06410	COG2199	diguanylate cyclase activity
F3090_RS06420	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
F3090_RS06425	COG1605	Chorismate mutase
F3090_RS06425	COG0287	Prephenate dehydrogenase
F3090_RS06435	COG1605	Chorismate mutase
F3090_RS06435	COG0077	Prephenate dehydratase
F3090_RS06445	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
F3090_RS06450	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
F3090_RS06465	COG0542	response to heat
F3090_RS06490	COG0477	Major facilitator Superfamily
F3090_RS06495	COG5544	Lipoprotein
F3090_RS06500	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
F3090_RS06510	COG3148	PFAM DTW domain containing protein
F3090_RS06515	COG3118	belongs to the thioredoxin family
F3090_RS06520	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
F3090_RS06535	COG0513	Belongs to the DEAD box helicase family
F3090_RS06545	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
F3090_RS06560	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
F3090_RS06565	COG3026	antisigma factor binding
F3090_RS06570	COG3086	response to oxidative stress
F3090_RS06580	COG0681	Belongs to the peptidase S26 family
F3090_RS06600	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
F3090_RS06610	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
F3090_RS06615	COG1737	Transcriptional regulator
F3090_RS06620	COG0560	Phosphoserine phosphatase
F3090_RS06635	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
F3090_RS06635	COG0047	phosphoribosylformylglycinamidine synthase activity
F3090_RS06640	COG2205	protein histidine kinase activity
F3090_RS06645	COG3170	Tfp pilus assembly protein FimV
F3090_RS06650	COG2204	response regulator
F3090_RS06655	COG0347	Belongs to the P(II) protein family
F3090_RS06660	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
F3090_RS06660	COG1017	nitric oxide dioxygenase activity
F3090_RS06670	COG2259	Doxx family
F3090_RS06675	COG1940	carbohydrate kinase activity
F3090_RS06680	COG0457	Tetratricopeptide repeat
F3090_RS06685	COG0477	Major facilitator Superfamily
F3090_RS06685	COG2814	Major facilitator Superfamily
F3090_RS06690	COG2017	converts alpha-aldose to the beta-anomer
F3090_RS06695	COG2814	Major facilitator Superfamily
F3090_RS06700	COG3711	transcriptional antiterminator
F3090_RS06705	COG3683	transport system, periplasmic component
F3090_RS06710	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
F3090_RS06740	COG0822	iron-sulfur transferase activity
F3090_RS06760	COG0633	Ferredoxin
F3090_RS06765	COG2975	iron-sulfur cluster assembly
F3090_RS06785	COG2897	thiosulfate sulfurtransferase activity
F3090_RS06790	COG2373	Large extracellular alpha-helical protein
F3090_RS06795	COG4953	penicillin-binding protein 1C
F3090_RS06825	COG2976	Protein conserved in bacteria
F3090_RS06845	COG1645	bacterial-type flagellum-dependent swarming motility
F3090_RS06855	COG0516	GMP reductase activity
F3090_RS06855	COG0517	IMP dehydrogenase activity
F3090_RS06865	COG3119	arylsulfatase activity
F3090_RS06870	COG0641	radical SAM
F3090_RS06890	COG2200	EAL domain
F3090_RS06905	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
F3090_RS06920	COG2723	6-phospho-beta-galactosidase activity
F3090_RS06930	COG2233	PERMEase
F3090_RS06945	COG1393	Belongs to the ArsC family
F3090_RS06950	COG4783	chaperone-mediated protein folding
F3090_RS06960	COG0628	permease
F3090_RS06965	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
F3090_RS06970	COG2716	regulation of RNA biosynthetic process
F3090_RS06980	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
F3090_RS06990	COG2321	neutral zinc metallopeptidase
F3090_RS06995	COG1444	tRNA N-acetyltransferase activity
F3090_RS07000	COG0400	carboxylic ester hydrolase activity
F3090_RS07015	COG1393	Belongs to the ArsC family
F3090_RS07030	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
F3090_RS07030	COG0493	'glutamate synthase
F3090_RS07040	COG5342	invasion associated locus B
F3090_RS07045	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
F3090_RS07050	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
F3090_RS07060	COG4810	utilization protein
F3090_RS07150	COG0860	N-Acetylmuramoyl-L-alanine amidase
F3090_RS07170	COG2837	iron assimilation
F3090_RS07180	COG4150	thiosulfate binding
F3090_RS07185	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
F3090_RS07190	COG4208	sulfate ABC transporter
F3090_RS07195	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
F3090_RS07205	COG4319	ketosteroid isomerase
F3090_RS07240	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
F3090_RS07260	COG3530	Putative quorum-sensing-regulated virulence factor
F3090_RS07265	COG0385	Bile acid
F3090_RS07270	COG0583	DNA-binding transcription factor activity
F3090_RS07300	COG3415	Transposase
F3090_RS07305	COG3415	Transposase
F3090_RS07320	COG2199	diguanylate cyclase activity
F3090_RS07320	COG2200	EAL domain
F3090_RS07325	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
F3090_RS07340	COG0667	Aldo Keto reductase
F3090_RS07345	COG3961	Belongs to the TPP enzyme family
F3090_RS07360	COG3279	Response regulator of the LytR AlgR family
F3090_RS07365	COG3275	phosphorelay sensor kinase activity
F3090_RS07380	COG0436	Aminotransferase
F3090_RS07390	COG2807	transmembrane transport
F3090_RS07395	COG0590	tRNA wobble adenosine to inosine editing
F3090_RS07400	COG0583	DNA-binding transcription factor activity
F3090_RS07420	COG2116	formate transmembrane transporter activity
F3090_RS07425	COG2853	Lipoprotein
F3090_RS07435	COG3691	Protein conserved in bacteria
F3090_RS07450	COG2062	phosphohistidine phosphatase, SixA
F3090_RS07475	COG0730	response to heat
F3090_RS07480	COG3101	peptidyl-lysine hydroxylation
F3090_RS07495	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
F3090_RS07515	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
F3090_RS07525	COG0586	Pfam SNARE associated Golgi protein
F3090_RS07535	COG0285	dihydrofolate synthase activity
F3090_RS07540	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
F3090_RS07545	COG1286	toxin biosynthetic process
F3090_RS07550	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
F3090_RS07555	COG0163	prenyltransferase activity
F3090_RS07580	COG4160	amino acid transport
F3090_RS07585	COG4598	ABC transporter
F3090_RS07600	COG1090	epimerase
F3090_RS07605	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
F3090_RS07610	COG0625	glutathione transferase activity
F3090_RS07615	COG0625	glutathione transferase activity
F3090_RS07620	COG0622	Phosphoesterase
F3090_RS07625	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
F3090_RS07630	COG0280	phosphate acetyltransferase
F3090_RS07630	COG0857	belongs to the CobB CobQ family
F3090_RS07650	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
F3090_RS07655	COG0490	domain, Protein
F3090_RS07655	COG0471	metal ion transport
F3090_RS07665	COG0436	Aminotransferase
F3090_RS07670	COG0583	DNA-binding transcription factor activity
F3090_RS07715	COG0839	Belongs to the complex I subunit 6 family
F3090_RS07725	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
F3090_RS07730	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
F3090_RS07745	COG2153	protein acetylation
F3090_RS07750	COG1169	isochorismate synthase
F3090_RS07775	COG0318	PFAM AMP-dependent synthetase and ligase
F3090_RS07785	COG5464	transposase or invertase
F3090_RS07800	COG1414	Transcriptional regulator
F3090_RS07810	COG2271	Major facilitator Superfamily
F3090_RS07820	COG0247	lactate metabolic process
F3090_RS07830	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
F3090_RS07835	COG2271	Major facilitator Superfamily
F3090_RS07840	COG0584	glycerophosphoryl diester phosphodiesterase
F3090_RS07845	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
F3090_RS07870	COG2205	protein histidine kinase activity
F3090_RS07870	COG0784	Response regulator, receiver
F3090_RS07880	COG2198	Histidine kinase
F3090_RS07880	COG0642	Histidine kinase
F3090_RS07900	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
F3090_RS07900	COG2169	Transcriptional regulator
F3090_RS07905	COG3145	DNA-N1-methyladenine dioxygenase activity
F3090_RS07910	COG4615	Cyclic peptide transporter
F3090_RS07915	COG2239	Acts as a magnesium transporter
F3090_RS07920	COG0659	secondary active sulfate transmembrane transporter activity
F3090_RS07935	COG0628	permease
F3090_RS07960	COG1349	DNA-binding transcription factor activity
F3090_RS07965	COG0494	nUDIX hydrolase
F3090_RS07985	COG1061	Type III restriction enzyme res subunit
F3090_RS07990	COG1187	pseudouridine synthase activity
F3090_RS07995	COG2814	Major facilitator Superfamily
F3090_RS08005	COG4172	Belongs to the ABC transporter superfamily
F3090_RS08010	COG4239	(ABC) transporter, permease
F3090_RS08015	COG4174	ABC transporter (Permease)
F3090_RS08020	COG4166	transmembrane transport
F3090_RS08025	COG2200	EAL domain
F3090_RS08030	COG0791	NLP P60 protein
F3090_RS08035	COG0671	phosphoesterase, PA-phosphatase related
F3090_RS08040	COG0523	cobalamin synthesis protein
F3090_RS08045	COG0246	Mannitol dehydrogenase
F3090_RS08050	COG1312	Catalyzes the dehydration of D-mannonate
F3090_RS08070	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS08070	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS08075	COG1105	Belongs to the carbohydrate kinase PfkB family
F3090_RS08080	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
F3090_RS08080	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
F3090_RS08080	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
F3090_RS08090	COG2855	membrane
F3090_RS08095	COG0583	DNA-binding transcription factor activity
F3090_RS08100	COG0833	amino acid
F3090_RS08105	COG4771	TonB-dependent receptor
F3090_RS08120	COG2311	Membrane
F3090_RS08135	COG1129	ABC transporter
F3090_RS08145	COG2949	membrane
F3090_RS08155	COG1346	cytolysis
F3090_RS08165	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
F3090_RS08170	COG3659	wide pore channel activity
F3090_RS08185	COG2723	6-phospho-beta-galactosidase activity
F3090_RS08190	COG1538	Outer membrane efflux protein
F3090_RS08195	COG0586	Pfam SNARE associated Golgi protein
F3090_RS08205	COG1686	Belongs to the peptidase S11 family
F3090_RS08215	COG0277	FAD linked oxidase domain protein
F3090_RS08220	COG1472	Belongs to the glycosyl hydrolase 3 family
F3090_RS08225	COG1732	Glycine betaine
F3090_RS08230	COG1174	glycine betaine transport
F3090_RS08235	COG1125	glycine betaine transport
F3090_RS08240	COG1174	glycine betaine transport
F3090_RS08250	COG3275	phosphorelay sensor kinase activity
F3090_RS08260	COG4807	Protein conserved in bacteria
F3090_RS08280	COG5455	response to cobalt ion
F3090_RS08285	COG0583	DNA-binding transcription factor activity
F3090_RS08290	COG2252	PERMEase
F3090_RS08300	COG0583	DNA-binding transcription factor activity
F3090_RS08315	COG0351	phosphomethylpyrimidine kinase
F3090_RS08320	COG1830	Aldolase
F3090_RS08355	COG1070	Carbohydrate kinase
F3090_RS08365	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
F3090_RS08370	COG4948	Mandelate Racemase Muconate Lactonizing
F3090_RS08375	COG0747	negative chemotaxis
F3090_RS08380	COG0601	transmembrane transport
F3090_RS08385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
F3090_RS08390	COG0444	Belongs to the ABC transporter superfamily
F3090_RS08395	COG4608	Belongs to the ABC transporter superfamily
F3090_RS08405	COG0826	peptidase U32
F3090_RS08410	COG0745	RESPONSE REGULATOR receiver
F3090_RS08415	COG2205	protein histidine kinase activity
F3090_RS08440	COG1301	dicarboxylic acid transport
F3090_RS08460	COG5002	protein histidine kinase activity
F3090_RS08465	COG0443	Heat shock 70 kDa protein
F3090_RS08470	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
F3090_RS08485	COG2982	Protein involved in outer membrane biogenesis
F3090_RS08490	COG1253	flavin adenine dinucleotide binding
F3090_RS08530	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
F3090_RS08560	COG2244	polysaccharide biosynthetic process
F3090_RS08610	COG0438	transferase activity, transferring glycosyl groups
F3090_RS08615	COG1216	Glycosyl transferase, family 2
F3090_RS08615	COG1442	glycosyl transferase family 8
F3090_RS08650	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
F3090_RS08680	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
F3090_RS08685	COG0583	DNA-binding transcription factor activity
F3090_RS08695	COG0531	amino acid
F3090_RS08700	COG0640	Transcriptional regulator
F3090_RS08705	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
F3090_RS08710	COG2925	Exonuclease
F3090_RS08720	COG3344	reverse transcriptase
F3090_RS08740	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
F3090_RS08760	COG2814	Major facilitator Superfamily
F3090_RS08765	COG0583	DNA-binding transcription factor activity
F3090_RS08770	COG1530	ribonuclease E activity
F3090_RS08790	COG1399	metal-binding, possibly nucleic acid-binding protein
F3090_RS08810	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
F3090_RS08825	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
F3090_RS08830	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
F3090_RS08835	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
F3090_RS08845	COG0470	DNA polymerase III
F3090_RS08850	COG0084	hydrolase, TatD family'
F3090_RS08860	COG0537	adenosine 5'-monophosphoramidase activity
F3090_RS08865	COG5633	Lipoprotein
F3090_RS08890	COG1252	NADH dehydrogenase
F3090_RS08895	COG3134	Outer membrane lipoprotein
F3090_RS08910	COG1309	transcriptional regulator
F3090_RS08925	COG1388	LysM domain
F3090_RS08925	COG1376	ErfK ybiS ycfS ynhG family protein
F3090_RS08930	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
F3090_RS08940	COG4591	ABC-type transport system involved in lipoprotein release permease component
F3090_RS08950	COG4591	ABC-type transport system involved in lipoprotein release permease component
F3090_RS08960	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
F3090_RS08970	COG2390	Transcriptional regulator
F3090_RS08985	COG3395	kinase activity
F3090_RS09000	COG0698	ribose 5-phosphate isomerase
F3090_RS09005	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
F3090_RS09010	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
F3090_RS09015	COG0318	PFAM AMP-dependent synthetase and ligase
F3090_RS09030	COG1177	transmembrane transport
F3090_RS09050	COG2850	peptidyl-arginine hydroxylation
F3090_RS09055	COG2205	protein histidine kinase activity
F3090_RS09075	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
F3090_RS09095	COG1187	pseudouridine synthase activity
F3090_RS09100	COG0538	isocitrate dehydrogenase activity
F3090_RS09130	COG3813	Protein conserved in bacteria
F3090_RS09135	COG1063	alcohol dehydrogenase
F3090_RS09140	COG3729	General stress protein
F3090_RS09145	COG3685	Protein conserved in bacteria
F3090_RS09165	COG3546	catalase activity
F3090_RS09170	COG1271	oxidase subunit
F3090_RS09175	COG1294	oxidase, subunit
F3090_RS09205	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
F3090_RS09210	COG0583	DNA-binding transcription factor activity
F3090_RS09215	COG3706	GGDEF domain
F3090_RS09225	COG1560	Kdo2-lipid A biosynthetic process
F3090_RS09235	COG3182	Iron-regulated membrane protein
F3090_RS09255	COG2203	Gaf domain
F3090_RS09255	COG2199	diguanylate cyclase activity
F3090_RS09260	COG4974	Belongs to the 'phage' integrase family
F3090_RS09300	COG0338	D12 class N6 adenine-specific DNA methyltransferase
F3090_RS09320	COG4695	Portal protein
F3090_RS09410	COG1078	dGTPase activity
F3090_RS09455	COG3042	response to heat
F3090_RS09460	COG3189	MarR family transcriptional regulator
F3090_RS09465	COG1683	Conserved Protein
F3090_RS09470	COG0504	CTP synthase activity
F3090_RS09475	COG2807	transmembrane transport
F3090_RS09480	COG2207	Transcriptional regulator
F3090_RS09490	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
F3090_RS09495	COG0859	PFAM glycosyl transferase family 9
F3090_RS09505	COG3344	reverse transcriptase
F3090_RS09510	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
F3090_RS09515	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
F3090_RS09520	COG0583	DNA-binding transcription factor activity
F3090_RS09525	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS09550	COG0386	Belongs to the glutathione peroxidase family
F3090_RS09565	COG2766	serine protein kinase
F3090_RS09570	COG3713	MltA-interacting MipA family protein
F3090_RS09575	COG0656	L-ascorbic acid biosynthetic process
F3090_RS09595	COG3139	Protein of unknown function (DUF1315)
F3090_RS09610	COG1335	isochorismatase
F3090_RS09615	COG0252	asparaginase activity
F3090_RS09620	COG0616	signal peptide processing
F3090_RS09625	COG0778	Nitroreductase
F3090_RS09635	COG0709	Synthesizes selenophosphate from selenide and ATP
F3090_RS09640	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
F3090_RS09645	COG3321	synthase
F3090_RS09645	COG0604	alcohol dehydrogenase
F3090_RS09645	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS09650	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
F3090_RS09655	COG0494	nUDIX hydrolase
F3090_RS09660	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
F3090_RS09665	COG2897	thiosulfate sulfurtransferase activity
F3090_RS09670	COG4136	ATPase activity
F3090_RS09675	COG4135	transport system, permease component
F3090_RS09680	COG4134	Bacterial extracellular solute-binding protein
F3090_RS09685	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
F3090_RS09690	COG0398	Pfam SNARE associated Golgi protein
F3090_RS09695	COG0398	Pfam SNARE associated Golgi protein
F3090_RS09700	COG0708	Exodeoxyribonuclease III
F3090_RS09710	COG3138	arginine N-succinyltransferase
F3090_RS09720	COG3724	N-succinylarginine dihydrolase activity
F3090_RS09730	COG3678	ATP-independent chaperone mediated protein folding
F3090_RS09735	COG0322	excinuclease ABC activity
F3090_RS09745	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
F3090_RS09750	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS09760	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS09765	COG1447	Phosphotransferase system cellobiose-specific component IIA
F3090_RS09770	COG1917	Cupin 2, conserved barrel domain protein
F3090_RS09770	COG2169	Transcriptional regulator
F3090_RS09775	COG1486	melibiose metabolic process
F3090_RS09785	COG0753	catalase activity
F3090_RS09795	COG1823	symporter activity
F3090_RS09800	COG1988	membrane-bound metal-dependent
F3090_RS09805	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS09810	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
F3090_RS09840	COG0727	PFAM Uncharacterised protein family (UPF0153)
F3090_RS09845	COG3047	cAMP biosynthetic process
F3090_RS09855	COG4774	siderophore transport
F3090_RS09890	COG0135	phosphoribosylanthranilate isomerase activity
F3090_RS09890	COG0134	indole-3-glycerol-phosphate synthase activity
F3090_RS09895	COG0512	Glutamine amidotransferase of anthranilate synthase
F3090_RS09895	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
F3090_RS09900	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
F3090_RS09910	COG0009	L-threonylcarbamoyladenylate synthase
F3090_RS09920	COG0583	DNA-binding transcription factor activity
F3090_RS09930	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
F3090_RS09935	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS09945	COG0616	signal peptide processing
F3090_RS09970	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
F3090_RS09980	COG0671	phosphoesterase, PA-phosphatase related
F3090_RS09985	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
F3090_RS09990	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
F3090_RS10000	COG0023	Translation Initiation Factor
F3090_RS10010	COG1349	DNA-binding transcription factor activity
F3090_RS10025	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
F3090_RS10025	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
F3090_RS10030	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
F3090_RS10040	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
F3090_RS10055	COG4171	peptide transport system, permease
F3090_RS10070	COG0702	epimerase
F3090_RS10085	COG1473	amidohydrolase
F3090_RS10095	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
F3090_RS10100	COG1842	Phage shock protein A
F3090_RS10110	COG1983	PspC domain protein
F3090_RS10120	COG3106	COG3106 Predicted ATPase
F3090_RS10130	COG0583	DNA-binding transcription factor activity
F3090_RS10135	COG1486	melibiose metabolic process
F3090_RS10145	COG3180	Ammonia monooxygenase
F3090_RS10150	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
F3090_RS10155	COG4948	Mandelate Racemase Muconate Lactonizing
F3090_RS10160	COG2866	Carboxypeptidase
F3090_RS10170	COG4166	transmembrane transport
F3090_RS10200	COG0656	L-ascorbic acid biosynthetic process
F3090_RS10215	COG0583	DNA-binding transcription factor activity
F3090_RS10220	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS10230	COG0693	protein deglycase activity
F3090_RS10235	COG0582	viral genome integration into host DNA
F3090_RS10315	COG0484	heat shock protein binding
F3090_RS10365	COG4626	Terminase
F3090_RS10365	COG1802	Transcriptional regulator
F3090_RS10370	COG4695	Portal protein
F3090_RS10375	COG0740	serine-type endopeptidase activity
F3090_RS10475	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
F3090_RS10510	COG2885	chlorophyll binding
F3090_RS10595	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS10600	COG1309	transcriptional regulator
F3090_RS10605	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS10625	COG0583	DNA-binding transcription factor activity
F3090_RS10655	COG0604	alcohol dehydrogenase
F3090_RS10660	COG0436	Aminotransferase
F3090_RS10675	COG2011	ABC-type metal ion transport system permease component
F3090_RS10680	COG1448	Aminotransferase
F3090_RS10690	COG1522	sequence-specific DNA binding
F3090_RS10695	COG1113	amino acid transport
F3090_RS10710	COG0673	inositol 2-dehydrogenase activity
F3090_RS10715	COG1349	DNA-binding transcription factor activity
F3090_RS10725	COG0513	Belongs to the DEAD box helicase family
F3090_RS10735	COG0589	response to stress
F3090_RS10745	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
F3090_RS10750	COG1013	pyruvate-flavodoxin oxidoreductase activity
F3090_RS10750	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
F3090_RS10750	COG0674	pyruvate-flavodoxin oxidoreductase activity
F3090_RS10750	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
F3090_RS10755	COG3042	response to heat
F3090_RS10760	COG3187	Heat shock protein
F3090_RS10765	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
F3090_RS10770	COG0586	Pfam SNARE associated Golgi protein
F3090_RS10775	COG2911	Protein conserved in bacteria
F3090_RS10785	COG3784	Protein of unknown function (DUF1318)
F3090_RS10790	COG2207	Transcriptional regulator
F3090_RS10865	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS10880	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS10890	COG1126	abc transporter atp-binding protein
F3090_RS10895	COG0583	DNA-binding transcription factor activity
F3090_RS10900	COG2072	flavoprotein involved in K transport
F3090_RS10935	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS10935	COG2030	dehydratase
F3090_RS10940	COG3396	Phenylacetate-CoA oxygenase
F3090_RS10945	COG3460	Phenylacetate-CoA oxygenase
F3090_RS10950	COG3396	Phenylacetate-CoA oxygenase
F3090_RS10955	COG2151	metal-sulfur cluster biosynthetic enzyme
F3090_RS10960	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
F3090_RS10965	COG1024	Enoyl-CoA hydratase
F3090_RS10970	COG1024	Enoyl-CoA hydratase
F3090_RS10975	COG1250	3-hydroxyacyl-CoA dehydrogenase
F3090_RS10980	COG2050	protein possibly involved in aromatic compounds catabolism
F3090_RS10985	COG0183	Belongs to the thiolase family
F3090_RS10990	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
F3090_RS10995	COG3327	negative regulation of DNA-templated transcription, initiation
F3090_RS11000	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
F3090_RS11015	COG1643	Atp-dependent helicase
F3090_RS11020	COG4122	O-methyltransferase activity
F3090_RS11045	COG0583	DNA-binding transcription factor activity
F3090_RS11050	COG0667	Aldo Keto reductase
F3090_RS11055	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
F3090_RS11065	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
F3090_RS11070	COG3138	arginine N-succinyltransferase
F3090_RS11075	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS11080	COG3724	N-succinylarginine dihydrolase activity
F3090_RS11085	COG2988	succinylglutamate desuccinylase activity
F3090_RS11090	COG1113	amino acid transport
F3090_RS11095	COG0477	Major facilitator Superfamily
F3090_RS11100	COG1434	Gram-negative-bacterium-type cell wall biogenesis
F3090_RS11110	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS11115	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
F3090_RS11120	COG0401	homolog of Blt101
F3090_RS11125	COG5562	phage envelope protein
F3090_RS11130	COG0425	Belongs to the sulfur carrier protein TusA family
F3090_RS11135	COG2391	methyltransferase activity
F3090_RS11160	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
F3090_RS11165	COG1263	PTS System
F3090_RS11165	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
F3090_RS11170	COG1609	Transcriptional regulator
F3090_RS11175	COG5339	Protein conserved in bacteria
F3090_RS11180	COG1482	cell wall glycoprotein biosynthetic process
F3090_RS11185	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
F3090_RS11185	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
F3090_RS11190	COG0114	fumarate hydratase activity
F3090_RS11200	COG2205	protein histidine kinase activity
F3090_RS11210	COG0745	RESPONSE REGULATOR receiver
F3090_RS11215	COG3136	membrane protein required for alginate biosynthesis
F3090_RS11225	COG0531	amino acid
F3090_RS11240	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
F3090_RS11245	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
F3090_RS11260	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
F3090_RS11275	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
F3090_RS11280	COG1473	amidohydrolase
F3090_RS11290	COG0583	DNA-binding transcription factor activity
F3090_RS11295	COG2840	Smr protein MutS2
F3090_RS11300	COG1414	Transcriptional regulator
F3090_RS11310	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
F3090_RS11315	COG0183	Belongs to the thiolase family
F3090_RS11325	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
F3090_RS11330	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
F3090_RS11340	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
F3090_RS11340	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
F3090_RS11360	COG4565	transcriptional regulatory protein
F3090_RS11365	COG3290	protein histidine kinase activity
F3090_RS11390	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
F3090_RS11400	COG0679	Auxin Efflux Carrier
F3090_RS11430	COG0628	permease
F3090_RS11450	COG3591	Belongs to the peptidase S1B family
F3090_RS11460	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
F3090_RS11465	COG2814	Major facilitator Superfamily
F3090_RS11470	COG0583	DNA-binding transcription factor activity
F3090_RS11475	COG1940	carbohydrate kinase activity
F3090_RS11480	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
F3090_RS11495	COG3302	dmso reductase anchor subunit
F3090_RS11500	COG0437	4 iron, 4 sulfur cluster binding
F3090_RS11520	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
F3090_RS11535	COG2271	Major facilitator Superfamily
F3090_RS11540	COG0246	Mannitol dehydrogenase
F3090_RS11545	COG0589	response to stress
F3090_RS11550	COG1802	Transcriptional regulator
F3090_RS11555	COG4221	oxidoreductase activity
F3090_RS11570	COG2207	Transcriptional regulator
F3090_RS11575	COG2135	peptidase activity
F3090_RS11590	COG2197	response regulator
F3090_RS11610	COG0071	Belongs to the small heat shock protein (HSP20) family
F3090_RS11615	COG1546	Belongs to the CinA family
F3090_RS11620	COG2200	EAL domain
F3090_RS11635	COG3708	Transcriptional regulator
F3090_RS11635	COG2207	Transcriptional regulator
F3090_RS11640	COG2610	gluconate transmembrane transporter activity
F3090_RS11645	COG3622	Belongs to the hyi family
F3090_RS11650	COG0235	Class ii aldolase
F3090_RS11655	COG3395	kinase activity
F3090_RS11660	COG2084	Dehydrogenase
F3090_RS11665	COG1349	DNA-binding transcription factor activity
F3090_RS11680	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
F3090_RS11685	COG2223	nitrite transmembrane transporter activity
F3090_RS11720	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
F3090_RS11725	COG0683	leucine binding
F3090_RS11740	COG1129	ABC transporter
F3090_RS11755	COG2814	Major facilitator Superfamily
F3090_RS11760	COG0697	spore germination
F3090_RS11770	COG4977	sequence-specific DNA binding
F3090_RS11800	COG2271	Major facilitator Superfamily
F3090_RS11805	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
F3090_RS11810	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
F3090_RS11820	COG3395	kinase activity
F3090_RS11825	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
F3090_RS11830	COG1349	DNA-binding transcription factor activity
F3090_RS11835	COG0039	L-malate dehydrogenase activity
F3090_RS11845	COG0583	DNA-binding transcription factor activity
F3090_RS11850	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS11865	COG2199	diguanylate cyclase activity
F3090_RS11915	COG0477	Major facilitator Superfamily
F3090_RS11925	COG2070	2-Nitropropane dioxygenase
F3090_RS11930	COG2011	ABC-type metal ion transport system permease component
F3090_RS11950	COG4628	conserved protein (DUF2132)
F3090_RS11965	COG2207	Transcriptional regulator
F3090_RS11995	COG2233	PERMEase
F3090_RS12000	COG3195	allantoin biosynthetic process
F3090_RS12000	COG3648	Uricase
F3090_RS12005	COG2351	hydroxyisourate hydrolase activity
F3090_RS12010	COG1396	sequence-specific DNA binding
F3090_RS12015	COG3550	peptidyl-serine autophosphorylation
F3090_RS12020	COG1649	PFAM Uncharacterised BCR, COG1649
F3090_RS12030	COG3188	usher protein
F3090_RS12070	COG2819	hydrolase of the alpha beta superfamily
F3090_RS12085	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS12085	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS12090	COG2814	Major facilitator Superfamily
F3090_RS12100	COG1263	PTS System
F3090_RS12100	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
F3090_RS12105	COG2186	Transcriptional regulator
F3090_RS12115	COG0583	DNA-binding transcription factor activity
F3090_RS12125	COG3835	regulator
F3090_RS12130	COG1929	Belongs to the glycerate kinase type-1 family
F3090_RS12175	COG0738	Major facilitator superfamily
F3090_RS12180	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
F3090_RS12185	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
F3090_RS12190	COG1349	DNA-binding transcription factor activity
F3090_RS12205	COG1349	DNA-binding transcription factor activity
F3090_RS12230	COG2801	Transposase and inactivated derivatives
F3090_RS12240	COG2801	Transposase and inactivated derivatives
F3090_RS12245	COG0667	Aldo Keto reductase
F3090_RS12250	COG0667	Aldo Keto reductase
F3090_RS12260	COG0456	acetyltransferase
F3090_RS12260	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
F3090_RS12285	COG1652	LysM domain
F3090_RS12300	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
F3090_RS12310	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
F3090_RS12315	COG3037	sugar-specific permease SgaT UlaA
F3090_RS12325	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS12330	COG1609	Transcriptional regulator
F3090_RS12340	COG2223	nitrite transmembrane transporter activity
F3090_RS12370	COG0477	Major facilitator Superfamily
F3090_RS12375	COG4529	Protein conserved in bacteria
F3090_RS12380	COG1902	pentaerythritol trinitrate reductase activity
F3090_RS12390	COG0583	DNA-binding transcription factor activity
F3090_RS12395	COG2070	2-Nitropropane dioxygenase
F3090_RS12405	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
F3090_RS12415	COG0765	amino acid transport
F3090_RS12460	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
F3090_RS12480	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
F3090_RS12495	COG2207	Transcriptional regulator
F3090_RS12515	COG0406	alpha-ribazole phosphatase activity
F3090_RS12555	COG1953	Uracil, thiamine, allantoin
F3090_RS12560	COG0402	S-adenosylhomocysteine deaminase activity
F3090_RS12565	COG3706	GGDEF domain
F3090_RS12570	COG1609	Transcriptional regulator
F3090_RS12580	COG0673	inositol 2-dehydrogenase activity
F3090_RS12595	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
F3090_RS12600	COG1116	anion transmembrane transporter activity
F3090_RS12605	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
F3090_RS12610	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
F3090_RS12615	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
F3090_RS12620	COG0076	glutamate decarboxylase activity
F3090_RS12635	COG2205	protein histidine kinase activity
F3090_RS12685	COG0519	Catalyzes the synthesis of GMP from XMP
F3090_RS12685	COG0518	GMP synthase (glutamine-hydrolyzing) activity
F3090_RS12705	COG0583	DNA-binding transcription factor activity
F3090_RS12715	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
F3090_RS12720	COG1285	pathogenesis
F3090_RS12725	COG2814	Major facilitator Superfamily
F3090_RS12730	COG1447	Phosphotransferase system cellobiose-specific component IIA
F3090_RS12735	COG0583	DNA-binding transcription factor activity
F3090_RS12740	COG0243	molybdopterin cofactor binding
F3090_RS12745	COG3781	membrane
F3090_RS12770	COG1764	response to oxidative stress
F3090_RS12780	COG3111	PFAM Bacterial OB fold (BOF) protein
F3090_RS12790	COG2323	membrane
F3090_RS12800	COG0366	Alpha amylase catalytic
F3090_RS12810	COG3685	Protein conserved in bacteria
F3090_RS12820	COG3729	General stress protein
F3090_RS12825	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS12870	COG0488	(ABC) transporter
F3090_RS12885	COG1064	alcohol dehydrogenase
F3090_RS12890	COG0747	negative chemotaxis
F3090_RS12900	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
F3090_RS12910	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
F3090_RS12920	COG2814	Major facilitator Superfamily
F3090_RS12945	COG2864	formate dehydrogenase
F3090_RS12950	COG0437	4 iron, 4 sulfur cluster binding
F3090_RS12975	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
F3090_RS12985	COG3485	protocatechuate 3,4-dioxygenase
F3090_RS12990	COG4829	muconolactone delta-isomerase
F3090_RS12995	COG4948	Mandelate Racemase Muconate Lactonizing
F3090_RS13000	COG1414	Transcriptional regulator
F3090_RS13020	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
F3090_RS13025	COG1140	nitrate reductase beta subunit
F3090_RS13030	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
F3090_RS13035	COG2181	nitrate reductase activity
F3090_RS13040	COG2162	N-hydroxyarylamine O-acetyltransferase activity
F3090_RS13045	COG1178	ABC-type Fe3 transport system permease component
F3090_RS13050	COG1840	ABC-type Fe3 transport system, periplasmic component
F3090_RS13055	COG3842	ATPase activity
F3090_RS13060	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
F3090_RS13075	COG2211	Major facilitator Superfamily
F3090_RS13095	COG0625	glutathione transferase activity
F3090_RS13105	COG1126	abc transporter atp-binding protein
F3090_RS13110	COG0765	amino acid transport
F3090_RS13120	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS13125	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
F3090_RS13130	COG1473	amidohydrolase
F3090_RS13135	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
F3090_RS13140	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
F3090_RS13165	COG4772	TonB-dependent receptor
F3090_RS13175	COG3691	Protein conserved in bacteria
F3090_RS13190	COG2130	NADP-dependent
F3090_RS13200	COG1247	-acetyltransferase
F3090_RS13205	COG3238	Protein conserved in bacteria
F3090_RS13215	COG0747	negative chemotaxis
F3090_RS13220	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS13255	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS13260	COG1177	transmembrane transport
F3090_RS13265	COG1176	ABC-type spermidine putrescine transport system, permease component I
F3090_RS13270	COG3842	ATPase activity
F3090_RS13275	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
F3090_RS13280	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
F3090_RS13285	COG1271	oxidase subunit
F3090_RS13290	COG1294	oxidase, subunit
F3090_RS13310	COG0826	peptidase U32
F3090_RS13320	COG1396	sequence-specific DNA binding
F3090_RS13325	COG3135	benzoate transporter
F3090_RS13330	COG3708	Transcriptional regulator
F3090_RS13330	COG2207	Transcriptional regulator
F3090_RS13345	COG0500	methyltransferase
F3090_RS13350	COG1275	C4-dicarboxylate transporter malic acid transport protein
F3090_RS13355	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
F3090_RS13360	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
F3090_RS13375	COG2272	Belongs to the type-B carboxylesterase lipase family
F3090_RS13380	COG5383	Protein conserved in bacteria
F3090_RS13385	COG3485	protocatechuate 3,4-dioxygenase
F3090_RS13390	COG3485	protocatechuate 3,4-dioxygenase
F3090_RS13395	COG0583	DNA-binding transcription factor activity
F3090_RS13415	COG3038	cytochrome b561
F3090_RS13435	COG2814	Major facilitator Superfamily
F3090_RS13445	COG0673	inositol 2-dehydrogenase activity
F3090_RS13455	COG2723	6-phospho-beta-galactosidase activity
F3090_RS13490	COG4659	FMN binding
F3090_RS13500	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
F3090_RS13510	COG0625	glutathione transferase activity
F3090_RS13515	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
F3090_RS13530	COG3895	Periplasmic Protein
F3090_RS13545	COG3706	GGDEF domain
F3090_RS13560	COG1566	PFAM secretion protein HlyD family protein
F3090_RS13565	COG1289	transmembrane transporter activity
F3090_RS13570	COG2032	superoxide dismutase activity
F3090_RS13575	COG4989	oxidoreductase activity
F3090_RS13580	COG3313	Fe-S protein
F3090_RS13585	COG1309	transcriptional regulator
F3090_RS13590	COG1902	pentaerythritol trinitrate reductase activity
F3090_RS13595	COG0346	lactoylglutathione lyase activity
F3090_RS13605	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
F3090_RS13610	COG0791	NLP P60 protein
F3090_RS13625	COG2814	Major facilitator Superfamily
F3090_RS13640	COG0583	DNA-binding transcription factor activity
F3090_RS13645	COG2814	Major facilitator Superfamily
F3090_RS13650	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
F3090_RS13655	COG0307	riboflavin synthase, alpha
F3090_RS13695	COG0300	oxidoreductase activity
F3090_RS13715	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
F3090_RS13750	COG1349	DNA-binding transcription factor activity
F3090_RS13755	COG0346	lactoylglutathione lyase activity
F3090_RS13780	COG0444	Belongs to the ABC transporter superfamily
F3090_RS13785	COG4608	Belongs to the ABC transporter superfamily
F3090_RS13840	COG0402	S-adenosylhomocysteine deaminase activity
F3090_RS13865	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
F3090_RS13890	COG0583	DNA-binding transcription factor activity
F3090_RS13900	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
F3090_RS13910	COG1250	3-hydroxyacyl-CoA dehydrogenase
F3090_RS13915	COG2610	gluconate transmembrane transporter activity
F3090_RS13920	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS13950	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
F3090_RS13965	COG0745	RESPONSE REGULATOR receiver
F3090_RS13970	COG3850	Histidine kinase
F3090_RS13970	COG5002	protein histidine kinase activity
F3090_RS13985	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
F3090_RS14005	COG3088	subunit of a heme lyase
F3090_RS14005	COG4235	cytochrome complex assembly
F3090_RS14010	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
F3090_RS14015	COG1138	Cytochrome C-type biogenesis protein
F3090_RS14030	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
F3090_RS14035	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
F3090_RS14040	COG4133	protoheme IX ABC transporter activity
F3090_RS14080	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
F3090_RS14085	COG3383	formate dehydrogenase (NAD+) activity
F3090_RS14125	COG1126	abc transporter atp-binding protein
F3090_RS14130	COG0765	amino acid transport
F3090_RS14150	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS14155	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS14160	COG1120	ATPase activity
F3090_RS14165	COG4774	siderophore transport
F3090_RS14170	COG1116	anion transmembrane transporter activity
F3090_RS14175	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
F3090_RS14195	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
F3090_RS14200	COG0583	DNA-binding transcription factor activity
F3090_RS14220	COG2814	Major facilitator Superfamily
F3090_RS14255	COG1414	Transcriptional regulator
F3090_RS14260	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
F3090_RS14265	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS14270	COG1120	ATPase activity
F3090_RS14280	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
F3090_RS14285	COG2271	Major facilitator Superfamily
F3090_RS14290	COG1082	Xylose isomerase domain protein TIM barrel
F3090_RS14290	COG3185	4-Hydroxyphenylpyruvate dioxygenase
F3090_RS14295	COG1309	transcriptional regulator
F3090_RS14325	COG1376	ErfK ybiS ycfS ynhG family protein
F3090_RS14340	COG0719	Fe-S assembly protein
F3090_RS14345	COG0396	ATPase activity
F3090_RS14350	COG0719	Fe-S assembly protein
F3090_RS14355	COG0316	Belongs to the HesB IscA family
F3090_RS14375	COG1309	transcriptional regulator
F3090_RS14380	COG1304	FMN binding
F3090_RS14405	COG0583	DNA-binding transcription factor activity
F3090_RS14415	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS14420	COG1120	ATPase activity
F3090_RS14445	COG2261	transglycosylase associated protein
F3090_RS14450	COG2050	protein possibly involved in aromatic compounds catabolism
F3090_RS14455	COG0247	lactate metabolic process
F3090_RS14455	COG0277	FAD linked oxidase domain protein
F3090_RS14460	COG0628	permease
F3090_RS14470	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
F3090_RS14470	COG0574	Belongs to the PEP-utilizing enzyme family
F3090_RS14485	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
F3090_RS14490	COG4256	Hemin uptake protein
F3090_RS14500	COG0791	NLP P60 protein
F3090_RS14510	COG0386	Belongs to the glutathione peroxidase family
F3090_RS14530	COG0583	DNA-binding transcription factor activity
F3090_RS14550	COG0072	phenylalanine-tRNA ligase activity
F3090_RS14550	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
F3090_RS14590	COG3137	Salt-induced outer membrane protein
F3090_RS14595	COG1105	Belongs to the carbohydrate kinase PfkB family
F3090_RS14605	COG3001	Fructosamine kinase
F3090_RS14615	COG2350	Protein conserved in bacteria
F3090_RS14625	COG2353	YceI-like domain
F3090_RS14645	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
F3090_RS14655	COG0444	Belongs to the ABC transporter superfamily
F3090_RS14660	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
F3090_RS14665	COG0601	transmembrane transport
F3090_RS14670	COG4166	transmembrane transport
F3090_RS14675	COG2095	MarC family integral membrane protein
F3090_RS14685	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS14685	COG1454	alcohol dehydrogenase
F3090_RS14690	COG1435	thymidine kinase activity
F3090_RS14700	COG2916	Histone family protein nucleoid-structuring protein H-NS
F3090_RS14705	COG1210	Utp--glucose-1-phosphate uridylyltransferase
F3090_RS14710	COG0745	RESPONSE REGULATOR receiver
F3090_RS14715	COG1752	Esterase of the alpha-beta hydrolase superfamily
F3090_RS14725	COG0788	formyltetrahydrofolate deformylase activity
F3090_RS14755	COG1522	sequence-specific DNA binding
F3090_RS14765	COG2181	nitrate reductase activity
F3090_RS14770	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
F3090_RS14775	COG1140	nitrate reductase beta subunit
F3090_RS14780	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
F3090_RS14790	COG2223	nitrite transmembrane transporter activity
F3090_RS14795	COG3850	Histidine kinase
F3090_RS14800	COG2197	response regulator
F3090_RS14805	COG4932	domain protein
F3090_RS14810	COG0243	molybdopterin cofactor binding
F3090_RS14815	COG2146	nitrite reductase [NAD(P)H] activity
F3090_RS14815	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
F3090_RS14820	COG1116	anion transmembrane transporter activity
F3090_RS14830	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
F3090_RS14835	COG3707	response regulator
F3090_RS14840	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
F3090_RS14850	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
F3090_RS14855	COG4572	Cation transport regulator
F3090_RS14860	COG0387	Pfam Sodium calcium exchanger
F3090_RS14880	COG2890	protein-(glutamine-N5) methyltransferase activity
F3090_RS14910	COG0659	secondary active sulfate transmembrane transporter activity
F3090_RS14930	COG0012	GTP binding
F3090_RS15020	COG1262	PFAM Formylglycine-generating sulfatase enzyme
F3090_RS15060	COG3039	Transposase
F3090_RS15070	COG2885	chlorophyll binding
F3090_RS15090	COG3122	Protein conserved in bacteria
F3090_RS15105	COG0583	DNA-binding transcription factor activity
F3090_RS15135	COG0583	DNA-binding transcription factor activity
F3090_RS15170	COG1882	Formate acetyltransferase
F3090_RS15185	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
F3090_RS15190	COG0583	DNA-binding transcription factor activity
F3090_RS15230	COG2308	Evidence 4 Homologs of previously reported genes of
F3090_RS15245	COG4774	siderophore transport
F3090_RS15255	COG1619	proteins homologs of microcin C7 resistance protein MccF
F3090_RS15280	COG2719	SpoVR family
F3090_RS15310	COG0179	Fumarylacetoacetate (FAA) hydrolase
F3090_RS15325	COG2894	cell division
F3090_RS15335	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
F3090_RS15345	COG3065	identical protein binding
F3090_RS15355	COG1199	ATP-dependent helicase activity
F3090_RS15360	COG0251	oxidation-reduction process
F3090_RS15380	COG1760	l-serine dehydratase
F3090_RS15385	COG2200	EAL domain
F3090_RS15390	COG1253	flavin adenine dinucleotide binding
F3090_RS15395	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS15395	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
F3090_RS15400	COG3715	PTS system
F3090_RS15405	COG3716	PTS system mannose fructose sorbose family IID component
F3090_RS15430	COG2226	methyltransferase
F3090_RS15435	COG0768	penicillin binding
F3090_RS15465	COG1414	Transcriptional regulator
F3090_RS15470	COG2814	Major facilitator Superfamily
F3090_RS15490	COG1956	GAF domain-containing protein
F3090_RS15495	COG2995	paraquat-inducible protein a
F3090_RS15500	COG3008	intermembrane lipid transfer
F3090_RS15525	COG2990	Protein conserved in bacteria
F3090_RS15540	COG1276	copper resistance
F3090_RS15545	COG2372	response to copper ion
F3090_RS15555	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
F3090_RS15560	COG1770	oligopeptidase
F3090_RS15565	COG2979	Protein of unknown function (DUF533)
F3090_RS15570	COG3141	response to X-ray
F3090_RS15580	COG0800	Aldolase
F3090_RS15585	COG0129	dihydroxy-acid dehydratase activity
F3090_RS15590	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
F3090_RS15600	COG1737	Transcriptional regulator
F3090_RS15610	COG1560	Kdo2-lipid A biosynthetic process
F3090_RS15615	COG0739	heme binding
F3090_RS15620	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
F3090_RS15630	COG1108	ABC-type Mn2 Zn2 transport systems permease components
F3090_RS15655	COG0494	nUDIX hydrolase
F3090_RS15665	COG1335	isochorismatase
F3090_RS15670	COG1801	Protein of unknown function DUF72
F3090_RS15675	COG3788	relative of glutathione S-transferase, MAPEG superfamily
F3090_RS15695	COG3385	transposase activity
F3090_RS15705	COG3102	Protein conserved in bacteria
F3090_RS15715	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
F3090_RS15740	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS15750	COG1879	ABC-type sugar transport system periplasmic component
F3090_RS15760	COG1528	Iron-storage protein
F3090_RS15770	COG2211	Major facilitator Superfamily
F3090_RS15780	COG0477	Major facilitator Superfamily
F3090_RS15795	COG1528	Iron-storage protein
F3090_RS15805	COG0814	amino acid
F3090_RS15810	COG3318	Belongs to the UPF0149 family
F3090_RS15810	COG3012	SEC-C Motif Domain Protein
F3090_RS15845	COG2197	response regulator
F3090_RS15855	COG2197	response regulator
F3090_RS15860	COG1126	abc transporter atp-binding protein
F3090_RS15865	COG0765	amino acid transport
F3090_RS15875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS15880	COG0366	Alpha amylase catalytic
F3090_RS15910	COG2354	Protein conserved in bacteria
F3090_RS15915	COG0697	spore germination
F3090_RS15920	COG3727	T/G mismatch-specific endonuclease activity
F3090_RS15925	COG0270	DNA (cytosine-5-)-methyltransferase activity
F3090_RS15930	COG1418	mRNA catabolic process
F3090_RS15940	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
F3090_RS15960	COG0251	oxidation-reduction process
F3090_RS15990	COG0025	NhaP-type Na H and K H
F3090_RS15995	COG1309	transcriptional regulator
F3090_RS16000	COG0604	alcohol dehydrogenase
F3090_RS16020	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
F3090_RS16030	COG0534	Mate efflux family protein
F3090_RS16045	COG3706	GGDEF domain
F3090_RS16070	COG3615	Tellurite resistance protein tehB
F3090_RS16080	COG5001	Diguanylate cyclase
F3090_RS16080	COG3300	MHYT domain
F3090_RS16090	COG0477	Major facilitator Superfamily
F3090_RS16095	COG0095	Lipoate-protein ligase
F3090_RS16100	COG0583	DNA-binding transcription factor activity
F3090_RS16105	COG1942	4-Oxalocrotonate Tautomerase
F3090_RS16115	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
F3090_RS16135	COG1289	transmembrane transporter activity
F3090_RS16145	COG3344	reverse transcriptase
F3090_RS16175	COG1560	Kdo2-lipid A biosynthetic process
F3090_RS16190	COG5645	(Lipo)protein
F3090_RS16225	COG3381	protein complex oligomerization
F3090_RS16250	COG0583	DNA-binding transcription factor activity
F3090_RS16260	COG1335	isochorismatase
F3090_RS16270	COG1702	phosphate starvation-inducible protein PhoH
F3090_RS16290	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
F3090_RS16300	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
F3090_RS16315	COG1309	transcriptional regulator
F3090_RS16350	COG2233	PERMEase
F3090_RS16360	COG3729	General stress protein
F3090_RS16520	COG4695	Portal protein
F3090_RS16595	COG4974	Belongs to the 'phage' integrase family
F3090_RS16610	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS16625	COG0531	amino acid
F3090_RS16630	COG0174	glutamine synthetase
F3090_RS16635	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
F3090_RS16640	COG1917	Cupin 2, conserved barrel domain protein
F3090_RS16640	COG1396	sequence-specific DNA binding
F3090_RS16645	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS16650	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
F3090_RS16655	COG0583	DNA-binding transcription factor activity
F3090_RS16660	COG0473	3-isopropylmalate dehydrogenase activity
F3090_RS16665	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
F3090_RS16670	COG4638	Rieske (2fe-2S)
F3090_RS16675	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS16680	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
F3090_RS16735	COG3772	lysozyme
F3090_RS16770	COG0741	lytic transglycosylase activity
F3090_RS16920	COG0305	Participates in initiation and elongation during chromosome replication
F3090_RS16945	COG1396	sequence-specific DNA binding
F3090_RS16990	COG0670	Belongs to the BI1 family
F3090_RS17005	COG2207	Transcriptional regulator
F3090_RS17010	COG1881	PFAM PEBP family protein
F3090_RS17025	COG1832	CoA-binding protein
F3090_RS17035	COG0210	DNA helicase
F3090_RS17040	COG3304	Inner membrane component domain
F3090_RS17045	COG1289	transmembrane transporter activity
F3090_RS17050	COG3070	regulator of competence-specific genes
F3090_RS17070	COG1067	ATP-dependent peptidase activity
F3090_RS17080	COG3130	regulation of translation
F3090_RS17085	COG3009	Protein conserved in bacteria
F3090_RS17090	COG3008	intermembrane lipid transfer
F3090_RS17090	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
F3090_RS17095	COG2995	paraquat-inducible protein a
F3090_RS17100	COG0488	(ABC) transporter
F3090_RS17110	COG3217	Mosc domain protein beta barrel domain protein
F3090_RS17110	COG0633	Ferredoxin
F3090_RS17125	COG0431	NADPH-dependent FMN reductase
F3090_RS17130	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
F3090_RS17135	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
F3090_RS17140	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
F3090_RS17150	COG0308	aminopeptidase N
F3090_RS17160	COG1473	amidohydrolase
F3090_RS17170	COG0814	amino acid
F3090_RS17190	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
F3090_RS17195	COG1448	Aminotransferase
F3090_RS17200	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
F3090_RS17205	COG3108	Peptidase M15
F3090_RS17210	COG2989	Protein conserved in bacteria
F3090_RS17220	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
F3090_RS17230	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
F3090_RS17235	COG1434	Gram-negative-bacterium-type cell wall biogenesis
F3090_RS17240	COG3173	Aminoglycoside phosphotransferase
F3090_RS17255	COG3214	Protein conserved in bacteria
F3090_RS17270	COG0658	competence protein
F3090_RS17270	COG2333	competence protein COMEC
F3090_RS17280	COG0539	negative regulation of cytoplasmic translation
F3090_RS17300	COG2323	membrane
F3090_RS17305	COG1944	ATP diphosphatase activity
F3090_RS17310	COG2116	formate transmembrane transporter activity
F3090_RS17315	COG1882	Formate acetyltransferase
F3090_RS17320	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
F3090_RS17325	COG0477	Major facilitator Superfamily
F3090_RS17330	COG3302	dmso reductase anchor subunit
F3090_RS17335	COG0437	4 iron, 4 sulfur cluster binding
F3090_RS17340	COG0243	molybdopterin cofactor binding
F3090_RS17350	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
F3090_RS17360	COG1178	ABC-type Fe3 transport system permease component
F3090_RS17360	COG1674	ftsk spoiiie
F3090_RS17370	COG0492	ferredoxin-NADP+ reductase activity
F3090_RS17375	COG4988	ABC transporter
F3090_RS17380	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
F3090_RS17395	COG0542	response to heat
F3090_RS17405	COG1278	Cold shock
F3090_RS17415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS17420	COG3593	DNA synthesis involved in DNA repair
F3090_RS17430	COG2431	L-lysine efflux transmembrane transporter activity
F3090_RS17440	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
F3090_RS17450	COG0028	Belongs to the TPP enzyme family
F3090_RS17455	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
F3090_RS17460	COG0702	epimerase
F3090_RS17465	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
F3090_RS17470	COG3023	N-Acetylmuramoyl-L-alanine amidase
F3090_RS17475	COG4251	negative regulation of phosphorylation
F3090_RS17475	COG5001	Diguanylate cyclase
F3090_RS17475	COG2203	Gaf domain
F3090_RS17475	COG3706	GGDEF domain
F3090_RS17485	COG1126	abc transporter atp-binding protein
F3090_RS17490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS17495	COG4215	(ABC) transporter
F3090_RS17500	COG4160	amino acid transport
F3090_RS17505	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS17510	COG5002	protein histidine kinase activity
F3090_RS17515	COG0745	RESPONSE REGULATOR receiver
F3090_RS17530	COG1177	transmembrane transport
F3090_RS17535	COG1176	ABC-type spermidine putrescine transport system, permease component I
F3090_RS17540	COG3842	ATPase activity
F3090_RS17545	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
F3090_RS17560	COG0778	Nitroreductase
F3090_RS17585	COG3226	Transcriptional regulator
F3090_RS17590	COG0738	Major facilitator superfamily
F3090_RS17595	COG0561	phosphatase activity
F3090_RS17600	COG2814	Major facilitator Superfamily
F3090_RS17605	COG0671	phosphoesterase, PA-phosphatase related
F3090_RS17610	COG1349	DNA-binding transcription factor activity
F3090_RS17615	COG1686	Belongs to the peptidase S11 family
F3090_RS17625	COG0625	glutathione transferase activity
F3090_RS17630	COG2133	pyrroloquinoline quinone binding
F3090_RS17640	COG2223	nitrite transmembrane transporter activity
F3090_RS17660	COG0747	negative chemotaxis
F3090_RS17675	COG0303	'Molybdopterin
F3090_RS17680	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
F3090_RS17685	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
F3090_RS17690	COG1882	Formate acetyltransferase
F3090_RS17695	COG0561	phosphatase activity
F3090_RS17705	COG1609	Transcriptional regulator
F3090_RS17710	COG2271	Major facilitator Superfamily
F3090_RS17720	COG0488	(ABC) transporter
F3090_RS17725	COG2365	Tyrosine phosphatase family
F3090_RS17730	COG1376	ErfK ybiS ycfS ynhG family protein
F3090_RS17735	COG2188	Transcriptional regulator
F3090_RS17740	COG2723	6-phospho-beta-galactosidase activity
F3090_RS17745	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
F3090_RS17760	COG2194	sulfuric ester hydrolase activity
F3090_RS17765	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
F3090_RS17780	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS17785	COG0765	amino acid transport
F3090_RS17790	COG1126	abc transporter atp-binding protein
F3090_RS17795	COG0668	transmembrane transport
F3090_RS17805	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
F3090_RS17815	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
F3090_RS17825	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
F3090_RS17830	COG1199	ATP-dependent helicase activity
F3090_RS17835	COG0513	Belongs to the DEAD box helicase family
F3090_RS17840	COG3958	Transketolase
F3090_RS17845	COG3959	Transketolase, thiamine diphosphate binding domain
F3090_RS17850	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS17855	COG2271	Major facilitator Superfamily
F3090_RS17865	COG0583	DNA-binding transcription factor activity
F3090_RS17870	COG1309	transcriptional regulator
F3090_RS17875	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS17880	COG1131	(ABC) transporter
F3090_RS17885	COG0842	Transport permease protein
F3090_RS17890	COG0842	Transport permease protein
F3090_RS17900	COG3568	Endonuclease Exonuclease Phosphatase
F3090_RS17905	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
F3090_RS17910	COG0392	lysyltransferase activity
F3090_RS17915	COG0670	Belongs to the BI1 family
F3090_RS17920	COG0314	molybdopterin synthase activity
F3090_RS17925	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
F3090_RS17935	COG0521	Mo-molybdopterin cofactor biosynthetic process
F3090_RS17955	COG0745	RESPONSE REGULATOR receiver
F3090_RS17960	COG0642	Histidine kinase
F3090_RS17985	COG2226	methyltransferase
F3090_RS18000	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
F3090_RS18005	COG1881	PFAM PEBP family protein
F3090_RS18045	COG4677	pectinesterase activity
F3090_RS18055	COG0589	response to stress
F3090_RS18060	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS18095	COG0789	Transcriptional regulator
F3090_RS18100	COG2200	EAL domain
F3090_RS18125	COG0561	phosphatase activity
F3090_RS18135	COG4149	molybdate abc transporter
F3090_RS18140	COG0725	ABC transporter, periplasmic molybdate-binding protein
F3090_RS18150	COG2005	Transcriptional regulator
F3090_RS18150	COG3585	molybdate ion transport
F3090_RS18155	COG1119	ATPase activity
F3090_RS18165	COG1085	galactose-1-phosphate uridylyltransferase
F3090_RS18175	COG2017	converts alpha-aldose to the beta-anomer
F3090_RS18185	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
F3090_RS18200	COG3201	nicotinamide mononucleotide transporter
F3090_RS18205	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
F3090_RS18230	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
F3090_RS18235	COG2885	chlorophyll binding
F3090_RS18245	COG3064	Membrane
F3090_RS18250	COG0848	biopolymer transport protein
F3090_RS18255	COG0811	peptide transport
F3090_RS18260	COG0824	Thioesterase
F3090_RS18265	COG3790	cyd operon protein YbgE
F3090_RS18270	COG4890	Cyd operon protein YbgT
F3090_RS18275	COG1294	oxidase, subunit
F3090_RS18280	COG1271	oxidase subunit
F3090_RS18285	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
F3090_RS18295	COG0508	dehydrogenase complex catalyzes the overall conversion of
F3090_RS18300	COG0567	Dehydrogenase, E1 component
F3090_RS18305	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
F3090_RS18310	COG1053	succinate dehydrogenase
F3090_RS18315	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
F3090_RS18320	COG2009	succinate dehydrogenase
F3090_RS18355	COG1984	allophanate hydrolase subunit 2
F3090_RS18360	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
F3090_RS18375	COG0415	Belongs to the DNA photolyase family
F3090_RS18405	COG2205	protein histidine kinase activity
F3090_RS18410	COG0745	RESPONSE REGULATOR receiver
F3090_RS18420	COG0033	Phosphoglucomutase
F3090_RS18430	COG0596	Alpha beta hydrolase
F3090_RS18445	COG0735	belongs to the Fur family
F3090_RS18485	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
F3090_RS18490	COG1846	Transcriptional regulator
F3090_RS18490	COG1940	carbohydrate kinase activity
F3090_RS18495	COG0647	UMP catabolic process
F3090_RS18500	COG0367	asparagine synthase
F3090_RS18540	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
F3090_RS18550	COG1702	phosphate starvation-inducible protein PhoH
F3090_RS18575	COG0765	amino acid transport
F3090_RS18580	COG0765	amino acid transport
F3090_RS18585	COG1126	abc transporter atp-binding protein
F3090_RS18600	COG2888	peptidyl-tyrosine sulfation
F3090_RS18615	COG1466	dna polymerase III delta subunit
F3090_RS18630	COG0799	negative regulation of ribosome biogenesis
F3090_RS18640	COG0768	penicillin binding
F3090_RS18645	COG0772	Belongs to the SEDS family
F3090_RS18650	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
F3090_RS18655	COG1686	Belongs to the peptidase S11 family
F3090_RS18670	COG0583	DNA-binding transcription factor activity
F3090_RS18685	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
F3090_RS18705	COG3069	C4-dicarboxylate transmembrane transporter activity
F3090_RS18710	COG3719	Belongs to the RNase T2 family
F3090_RS18715	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
F3090_RS18735	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
F3090_RS18740	COG0583	DNA-binding transcription factor activity
F3090_RS18745	COG3969	phosphoadenosine phosphosulfate
F3090_RS18750	COG1475	DNA binding
F3090_RS18755	COG0436	Aminotransferase
F3090_RS18780	COG1129	ABC transporter
F3090_RS18785	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS18790	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS18800	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
F3090_RS18815	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
F3090_RS18825	COG0402	S-adenosylhomocysteine deaminase activity
F3090_RS18835	COG0483	inositol monophosphate 1-phosphatase activity
F3090_RS18840	COG2271	Major facilitator Superfamily
F3090_RS18870	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS18875	COG1129	ABC transporter
F3090_RS18880	COG0371	Dehydrogenase
F3090_RS18885	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS18900	COG2879	small protein
F3090_RS18905	COG1966	Carbon starvation protein
F3090_RS18915	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS18920	COG3433	isochorismatase activity
F3090_RS18920	COG1535	isochorismatase
F3090_RS18925	COG1021	2,3-dihydroxybenzoate-AMP ligase
F3090_RS18930	COG1169	isochorismate synthase
F3090_RS18935	COG4592	Periplasmic binding protein
F3090_RS18945	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS18950	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS18955	COG1120	ATPase activity
F3090_RS18960	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
F3090_RS18960	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
F3090_RS18965	COG3251	PFAM MbtH domain protein
F3090_RS18970	COG2382	esterase
F3090_RS18975	COG4771	TonB-dependent receptor
F3090_RS18980	COG2977	Belongs to the P-Pant transferase superfamily
F3090_RS18985	COG3958	Transketolase
F3090_RS18990	COG3959	Transketolase, thiamine diphosphate binding domain
F3090_RS18995	COG2390	Transcriptional regulator
F3090_RS19000	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
F3090_RS19005	COG1879	ABC-type sugar transport system periplasmic component
F3090_RS19015	COG1129	ABC transporter
F3090_RS19020	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS19030	COG1028	Short-chain dehydrogenase reductase Sdr
F3090_RS19040	COG0583	DNA-binding transcription factor activity
F3090_RS19045	COG0668	transmembrane transport
F3090_RS19055	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
F3090_RS19080	COG0747	negative chemotaxis
F3090_RS19085	COG0601	transmembrane transport
F3090_RS19090	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
F3090_RS19095	COG0444	Belongs to the ABC transporter superfamily
F3090_RS19100	COG4608	Belongs to the ABC transporter superfamily
F3090_RS19105	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
F3090_RS19110	COG4221	oxidoreductase activity
F3090_RS19120	COG4215	(ABC) transporter
F3090_RS19125	COG0765	amino acid transport
F3090_RS19130	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
F3090_RS19145	COG0697	spore germination
F3090_RS19160	COG4608	Belongs to the ABC transporter superfamily
F3090_RS19165	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
F3090_RS19175	COG4166	transmembrane transport
F3090_RS19185	COG3698	Phosphodiester glycosidase
F3090_RS19225	COG2315	Protein conserved in bacteria
F3090_RS19230	COG0778	Nitroreductase
F3090_RS19255	COG0477	Major facilitator Superfamily
F3090_RS19260	COG0668	transmembrane transport
F3090_RS19265	COG1609	Transcriptional regulator
F3090_RS19275	COG0673	inositol 2-dehydrogenase activity
F3090_RS19285	COG2211	Major facilitator Superfamily
F3090_RS19290	COG1113	amino acid transport
F3090_RS19305	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS19310	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
F3090_RS19320	COG0531	amino acid
F3090_RS19365	COG0667	Aldo Keto reductase
F3090_RS19370	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS19375	COG1473	amidohydrolase
F3090_RS19405	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS19410	COG1120	ATPase activity
F3090_RS19415	COG1566	PFAM secretion protein HlyD family protein
F3090_RS19460	COG4211	Belongs to the binding-protein-dependent transport system permease family
F3090_RS19465	COG1129	ABC transporter
F3090_RS19480	COG0673	inositol 2-dehydrogenase activity
F3090_RS19510	COG3104	oligopeptide transport
F3090_RS19515	COG1982	Orn Lys Arg decarboxylase major
F3090_RS19520	COG0531	amino acid
F3090_RS19525	COG3710	Transcriptional regulator
F3090_RS19535	COG1560	Kdo2-lipid A biosynthetic process
F3090_RS19550	COG3188	usher protein
F3090_RS19555	COG3121	Chaperone
F3090_RS19560	COG3539	Fimbrial protein
F3090_RS19740	COG5484	DNA packaging
F3090_RS19740	COG3728	DNA packaging
F3090_RS19790	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
F3090_RS19970	COG2501	S4 domain
F3090_RS19980	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
F3090_RS19995	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
F3090_RS20000	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
F3090_RS20020	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
F3090_RS20025	COG4181	ATPase activity
F3090_RS20030	COG2755	lipolytic protein G-D-S-L family
F3090_RS20035	COG0300	oxidoreductase activity
F3090_RS20040	COG3118	belongs to the thioredoxin family
F3090_RS20045	COG0390	transport system, permease component
F3090_RS20050	COG4619	ABC transporter
F3090_RS20055	COG0330	HflC and HflK could
F3090_RS20060	COG1585	Membrane protein implicated in regulation of membrane protease activity
F3090_RS20075	COG3735	TraB family
F3090_RS20080	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
F3090_RS20090	COG2223	nitrite transmembrane transporter activity
F3090_RS20095	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
F3090_RS20095	COG4651	solute:proton antiporter activity
F3090_RS20100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
F3090_RS20140	COG2832	Protein of unknown function (DUF454)
F3090_RS20145	COG3923	Primosomal replication protein n
F3090_RS20160	COG3264	Mechanosensitive ion channel
F3090_RS20160	COG1196	nuclear chromosome segregation
F3090_RS20180	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS20185	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
F3090_RS20200	COG0110	maltose O-acetyltransferase activity
F3090_RS20250	COG1874	Beta-galactosidase
F3090_RS20255	COG3867	Arabinogalactan endo-beta-1,4-galactanase
F3090_RS20260	COG3833	ABC-type maltose transport systems, permease component
F3090_RS20265	COG1175	transmembrane transport
F3090_RS20270	COG2182	Extracellular solute-binding protein
F3090_RS20280	COG4943	cyclic-guanylate-specific phosphodiesterase activity
F3090_RS20295	COG2364	Membrane
F3090_RS20325	COG3695	enzyme binding
F3090_RS20330	COG3126	Type III secretion system lipoprotein chaperone (YscW)
F3090_RS20335	COG1946	Acyl-CoA thioesterase
F3090_RS20340	COG0004	ammonium transporteR
F3090_RS20345	COG0347	Belongs to the P(II) protein family
F3090_RS20350	COG1132	(ABC) transporter
F3090_RS20355	COG1132	(ABC) transporter
F3090_RS20360	COG1522	sequence-specific DNA binding
F3090_RS20375	COG4533	DNA binding
F3090_RS20385	COG0824	Thioesterase
F3090_RS20390	COG1555	photosystem II stabilization
F3090_RS20395	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
F3090_RS20400	COG0776	regulation of translation
F3090_RS20405	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
F3090_RS20425	COG0271	Belongs to the BolA IbaG family
F3090_RS20430	COG3056	Lipoprotein
F3090_RS20435	COG2223	nitrite transmembrane transporter activity
F3090_RS20440	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
F3090_RS20445	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
F3090_RS20450	COG1845	cytochrome c oxidase, subunit III
F3090_RS20455	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
F3090_RS20470	COG1414	Transcriptional regulator
F3090_RS20475	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
F3090_RS20480	COG1053	succinate dehydrogenase
F3090_RS20490	COG1053	succinate dehydrogenase
F3090_RS20505	COG0673	inositol 2-dehydrogenase activity
F3090_RS20510	COG2814	Major facilitator Superfamily
F3090_RS20520	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
F3090_RS20545	COG0142	geranyltranstransferase activity
F3090_RS20555	COG0667	Aldo Keto reductase
F3090_RS20560	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
F3090_RS20565	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
F3090_RS20580	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
F3090_RS20580	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
F3090_RS20590	COG4238	major outer membrane lipoprotein
F3090_RS20610	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
F3090_RS20615	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
F3090_RS20620	COG1862	Preprotein translocase
F3090_RS20645	COG0450	alkyl hydroperoxide reductase
F3090_RS20655	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS20690	COG1228	amidohydrolase
F3090_RS20700	COG1335	isochorismatase
F3090_RS20705	COG0583	DNA-binding transcription factor activity
F3090_RS20710	COG0366	Alpha amylase catalytic
F3090_RS20735	COG0420	3'-5' exonuclease activity
F3090_RS20740	COG0419	ATPase involved in DNA repair
F3090_RS20745	COG1940	carbohydrate kinase activity
F3090_RS20760	COG4126	flavin adenine dinucleotide binding
F3090_RS20770	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
F3090_RS20775	COG3416	Protein conserved in bacteria
F3090_RS20785	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
F3090_RS20795	COG1785	Belongs to the alkaline phosphatase family
F3090_RS20835	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
F3090_RS20840	COG1335	isochorismatase
F3090_RS20845	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
F3090_RS20850	COG0113	porphobilinogen synthase activity
F3090_RS20860	COG2175	clavaminate synthase activity
F3090_RS20865	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
F3090_RS20870	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
F3090_RS20875	COG4521	taurine ABC transporter
F3090_RS20880	COG2040	homocysteine
F3090_RS20885	COG0833	amino acid
F3090_RS20900	COG4303	Ethanolamine ammonia lyase large subunit
F3090_RS20905	COG4302	ethanolamine ammonia-lyase activity
F3090_RS20945	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS20950	COG1126	abc transporter atp-binding protein
F3090_RS20955	COG4597	amino acid ABC transporter
F3090_RS20960	COG0765	amino acid transport
F3090_RS20975	COG3188	usher protein
F3090_RS21000	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
F3090_RS21010	COG3639	organic phosphonate transmembrane transporter activity
F3090_RS21030	COG0791	NLP P60 protein
F3090_RS21065	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
F3090_RS21065	COG0456	acetyltransferase
F3090_RS21135	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
F3090_RS21140	COG0022	dehydrogenase e1 component
F3090_RS21145	COG0508	dehydrogenase complex catalyzes the overall conversion of
F3090_RS21150	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
F3090_RS21160	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
F3090_RS21175	COG0579	oxidoreductase
F3090_RS21180	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS21185	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
F3090_RS21190	COG1113	amino acid transport
F3090_RS21195	COG1802	Transcriptional regulator
F3090_RS21215	COG2195	Cleaves the N-terminal amino acid of tripeptides
F3090_RS21220	COG0454	-acetyltransferase
F3090_RS21235	COG2991	Protein conserved in bacteria
F3090_RS21250	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
F3090_RS21255	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
F3090_RS21270	COG3034	peptidoglycan biosynthetic process
F3090_RS21275	COG0121	glutamine amidotransferase
F3090_RS21285	COG1960	acyl-CoA dehydrogenase activity
F3090_RS21290	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
F3090_RS21300	COG0583	DNA-binding transcription factor activity
F3090_RS21310	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
F3090_RS21320	COG2226	methyltransferase
F3090_RS21330	COG1388	LysM domain
F3090_RS21330	COG0741	lytic transglycosylase activity
F3090_RS21335	COG2226	methyltransferase
F3090_RS21345	COG2814	Major facilitator Superfamily
F3090_RS21350	COG0583	DNA-binding transcription factor activity
F3090_RS21355	COG0656	L-ascorbic acid biosynthetic process
F3090_RS21390	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
F3090_RS21400	COG2011	ABC-type metal ion transport system permease component
F3090_RS21405	COG1464	Belongs to the NlpA lipoprotein family
F3090_RS21415	COG1720	tRNA m6t6A37 methyltransferase activity
F3090_RS21425	COG0791	NLP P60 protein
F3090_RS21430	COG3015	lipoprotein NlpE involved in copper resistance
F3090_RS21435	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
F3090_RS21450	COG4568	rho-dependent transcription termination
F3090_RS21460	COG0346	lactoylglutathione lyase activity
F3090_RS21465	COG1982	Orn Lys Arg decarboxylase major
F3090_RS21475	COG0587	DNA-directed DNA polymerase activity
F3090_RS21505	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
F3090_RS21515	COG0750	zinc metalloprotease
F3090_RS21520	COG0575	Belongs to the CDS family
F3090_RS21530	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
F3090_RS21555	COG0024	Methionine aminopeptidase
F3090_RS21560	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
F3090_RS21575	COG3835	regulator
F3090_RS21580	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
F3090_RS21600	COG2860	membrane
F3090_RS21620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
F3090_RS21625	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
F3090_RS21630	COG1120	ATPase activity
F3090_RS21635	COG4774	siderophore transport
F3090_RS21640	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
F3090_RS21735	COG1643	Atp-dependent helicase
F3090_RS21740	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
F3090_RS21760	COG0617	tRNA 3'-terminal CCA addition
F3090_RS21765	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
F3090_RS21785	COG0726	polysaccharide deacetylase
F3090_RS21790	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS21795	COG0842	Transport permease protein
F3090_RS21800	COG1131	(ABC) transporter
F3090_RS21805	COG0288	reversible hydration of carbon dioxide
F3090_RS21820	COG4993	Dehydrogenase
F3090_RS21825	COG2132	Multicopper oxidase
F3090_RS21865	COG3064	Membrane
F3090_RS21880	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
F3090_RS21885	COG0508	dehydrogenase complex catalyzes the overall conversion of
F3090_RS21890	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
F3090_RS21895	COG2186	Transcriptional regulator
F3090_RS21900	COG1113	amino acid transport
F3090_RS21905	COG2211	Major facilitator Superfamily
F3090_RS21910	COG3940	Belongs to the glycosyl hydrolase 43 family
F3090_RS21915	COG3725	Membrane protein required for beta-lactamase induction
F3090_RS21920	COG3023	N-Acetylmuramoyl-L-alanine amidase
F3090_RS21930	COG4969	Belongs to the N-Me-Phe pilin family
F3090_RS21935	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
F3090_RS21940	COG1459	type II secretion system
F3090_RS21965	COG0494	nUDIX hydrolase
F3090_RS21985	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
F3090_RS21990	COG0849	cell division
F3090_RS22015	COG0772	Belongs to the SEDS family
F3090_RS22030	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
F3090_RS22035	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
F3090_RS22040	COG0768	penicillin binding
F3090_RS22060	COG1609	Transcriptional regulator
F3090_RS22070	COG0028	Belongs to the TPP enzyme family
F3090_RS22115	COG0738	Major facilitator superfamily
F3090_RS22125	COG0583	DNA-binding transcription factor activity
F3090_RS22130	COG2271	Major facilitator Superfamily
F3090_RS22135	COG2814	Major facilitator Superfamily
F3090_RS22155	COG1178	ABC-type Fe3 transport system permease component
F3090_RS22165	COG0586	Pfam SNARE associated Golgi protein
F3090_RS22185	COG0235	Class ii aldolase
F3090_RS22190	COG0417	DNA replication proofreading
F3090_RS22200	COG0564	pseudouridine synthase activity
F3090_RS22210	COG3493	citrate carrier protein
F3090_RS22225	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
F3090_RS22230	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
F3090_RS22240	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
F3090_RS22285	COG0505	Belongs to the CarA family
F3090_RS22295	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
F3090_RS22320	COG1047	Peptidyl-prolyl cis-trans
F3090_RS22335	COG0196	riboflavin kinase activity
F3090_RS22345	COG0583	DNA-binding transcription factor activity
F3090_RS22370	COG4735	regulation of single-species biofilm formation
F3090_RS22375	COG1584	GPR1 FUN34 yaaH family protein
F3090_RS22385	COG0521	Mo-molybdopterin cofactor biosynthetic process
F3090_RS22390	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
F3090_RS22395	COG1115	amino acid carrier protein
F3090_RS22410	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
F3090_RS22420	COG0460	homoserine dehydrogenase
F3090_RS22420	COG0527	aspartate kinase activity
F3090_RS22430	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
F3090_RS22440	COG0745	RESPONSE REGULATOR receiver
F3090_RS22445	COG4452	Inner membrane protein CreD
F3090_RS22450	COG2205	protein histidine kinase activity
F3090_RS22455	COG0745	RESPONSE REGULATOR receiver
F3090_RS22460	COG3045	CreA protein
F3090_RS22465	COG2207	Transcriptional regulator
F3090_RS22465	COG3708	Transcriptional regulator
F3090_RS22485	COG0741	lytic transglycosylase activity
F3090_RS22490	COG0488	(ABC) transporter
F3090_RS22500	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
F3090_RS22505	COG0560	Phosphoserine phosphatase
F3090_RS22510	COG3726	membrane protein affecting hemolysin expression
F3090_RS22540	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
F3090_RS22545	COG0084	hydrolase, TatD family'
F3090_RS22550	COG4667	esterase of the alpha-beta hydrolase superfamily
F3090_RS22560	COG2823	Periplasmic or secreted lipoprotein
F3090_RS22570	COG1011	Hydrolase
F3090_RS22575	COG0456	acetyltransferase
F3090_RS22580	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
F3090_RS22615	COG3706	GGDEF domain
F3090_RS22620	COG4114	ferric iron reductase
F3090_RS22625	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS22625	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS22630	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
F3090_RS22635	COG2197	response regulator
F3090_RS22640	COG2197	response regulator
F3090_RS22655	COG2966	Psort location CytoplasmicMembrane, score
F3090_RS22670	COG1484	DNA-dependent DNA replication
F3090_RS22685	COG5464	transposase or invertase
F3090_RS22695	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
F3090_RS22700	COG3716	PTS system mannose fructose sorbose family IID component
F3090_RS22705	COG3715	PTS system
F3090_RS22720	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
F3090_RS22720	COG3933	PFAM sigma-54 factor interaction domain-containing protein
F3090_RS22730	COG1063	alcohol dehydrogenase
F3090_RS22735	COG1802	Transcriptional regulator
F3090_RS22740	COG2271	Major facilitator Superfamily
F3090_RS22745	COG1214	PFAM Peptidase M22, glycoprotease
F3090_RS22745	COG0456	acetyltransferase
F3090_RS22755	COG1737	Transcriptional regulator
F3090_RS22760	COG0800	Aldolase
F3090_RS22765	COG3734	2-keto-3-deoxy-galactonokinase
F3090_RS22780	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
F3090_RS22805	COG1846	Transcriptional regulator
F3090_RS22815	COG0179	Fumarylacetoacetate (FAA) hydrolase
F3090_RS22825	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS22830	COG3384	dioxygenase
F3090_RS22840	COG3971	2-oxopent-4-enoate hydratase activity
F3090_RS22860	COG2368	4-hydroxyphenylacetate
F3090_RS22865	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
F3090_RS22880	COG1966	Carbon starvation protein
F3090_RS22885	COG2879	small protein
F3090_RS22890	COG0523	cobalamin synthesis protein
F3090_RS22900	COG1012	belongs to the aldehyde dehydrogenase family
F3090_RS22905	COG5464	transposase or invertase
F3090_RS22910	COG2207	Transcriptional regulator
F3090_RS22910	COG1917	Cupin 2, conserved barrel domain protein
F3090_RS22920	COG2733	membrane
F3090_RS22935	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
F3090_RS22940	COG1924	4 iron, 4 sulfur cluster binding
F3090_RS22955	COG1566	PFAM secretion protein HlyD family protein
F3090_RS22965	COG5457	Domain of unknown function (DUF1127)
F3090_RS22970	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
F3090_RS22985	COG0583	DNA-binding transcription factor activity
F3090_RS22990	COG2249	NAD(P)H dehydrogenase (quinone) activity
F3090_RS23000	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS23005	COG1129	ABC transporter
F3090_RS23010	COG1879	ABC-type sugar transport system periplasmic component
F3090_RS23020	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS23025	COG1129	ABC transporter
F3090_RS23025	COG0842	Transport permease protein
F3090_RS23030	COG0842	Transport permease protein
F3090_RS23060	COG2850	peptidyl-arginine hydroxylation
F3090_RS23075	COG5002	protein histidine kinase activity
F3090_RS23080	COG0745	RESPONSE REGULATOR receiver
F3090_RS23085	COG1538	Outer membrane efflux protein
F3090_RS23090	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS23095	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
F3090_RS23100	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
F3090_RS23110	COG3040	lipid binding
F3090_RS23115	COG0789	Transcriptional regulator
F3090_RS23120	COG3631	Ketosteroid isomerase-related protein
F3090_RS23125	COG0300	oxidoreductase activity
F3090_RS23140	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
F3090_RS23160	COG3272	Protein of unknown function (DUF1722)
F3090_RS23165	COG4580	involved in the transport of maltose and maltodextrins
F3090_RS23170	COG2115	Belongs to the xylose isomerase family
F3090_RS23175	COG2211	Major facilitator Superfamily
F3090_RS23180	COG3507	Belongs to the glycosyl hydrolase 43 family
F3090_RS23240	COG0582	viral genome integration into host DNA
F3090_RS23250	COG0288	reversible hydration of carbon dioxide
F3090_RS23255	COG0659	secondary active sulfate transmembrane transporter activity
F3090_RS23260	COG1064	alcohol dehydrogenase
F3090_RS23265	COG1175	transmembrane transport
F3090_RS23270	COG0395	ABC-type sugar transport system, permease component
F3090_RS23275	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
F3090_RS23280	COG3842	ATPase activity
F3090_RS23295	COG1082	Xylose isomerase domain protein TIM barrel
F3090_RS23305	COG3962	Belongs to the TPP enzyme family
F3090_RS23310	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
F3090_RS23315	COG1737	Transcriptional regulator
F3090_RS23315	COG0837	glucose binding
F3090_RS23320	COG3718	enzyme involved in inositol metabolism
F3090_RS23335	COG0433	COG0433 Predicted ATPase
F3090_RS23340	COG0795	lipopolysaccharide-transporting ATPase activity
F3090_RS23345	COG0795	lipopolysaccharide-transporting ATPase activity
F3090_RS23355	COG2927	DNA polymerase III (CHI subunit)
F3090_RS23360	COG0525	valine-tRNA ligase activity
F3090_RS23385	COG2731	YhcH YjgK YiaL family protein
F3090_RS23420	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
F3090_RS23420	COG1263	PTS System
F3090_RS23425	COG0366	Alpha amylase catalytic
F3090_RS23430	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
F3090_RS23435	COG1486	melibiose metabolic process
F3090_RS23460	COG0602	queuosine metabolic process
F3090_RS23465	COG2026	Addiction module toxin, RelE StbE family
F3090_RS23470	COG3077	Addiction module antitoxin, RelB DinJ family
F3090_RS23475	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
F3090_RS23475	COG3711	transcriptional antiterminator
F3090_RS23480	COG2706	6-phosphogluconolactonase activity
F3090_RS23495	COG3964	amidohydrolase
F3090_RS23530	COG0312	modulator of DNA gyrase
F3090_RS23555	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
F3090_RS23565	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS23570	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS23575	COG1129	ABC transporter
F3090_RS23580	COG1879	ABC-type sugar transport system periplasmic component
F3090_RS23600	COG2105	PFAM AIG2 family protein
F3090_RS23605	COG2911	Protein conserved in bacteria
F3090_RS23610	COG0729	surface antigen
F3090_RS23620	COG1253	flavin adenine dinucleotide binding
F3090_RS23645	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
F3090_RS23660	COG1733	regulation of RNA biosynthetic process
F3090_RS23665	COG0702	epimerase
F3090_RS23675	COG0697	spore germination
F3090_RS23685	COG1113	amino acid transport
F3090_RS23690	COG0545	Peptidyl-prolyl cis-trans isomerase
F3090_RS23695	COG3061	Opacity-associated protein A
F3090_RS23705	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
F3090_RS23710	COG2965	DNA replication, synthesis of RNA primer
F3090_RS23770	COG1073	alpha beta
F3090_RS23775	COG3650	response to hydrogen peroxide
F3090_RS23785	COG1960	acyl-CoA dehydrogenase activity
F3090_RS23790	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
F3090_RS23795	COG0557	exoribonuclease II activity
F3090_RS23810	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
F3090_RS23820	COG0330	HflC and HflK could
F3090_RS23825	COG0330	HflC and HflK could
F3090_RS23830	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
F3090_RS23850	COG0860	N-Acetylmuramoyl-L-alanine amidase
F3090_RS23855	COG0802	atpase or kinase
F3090_RS23860	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
F3090_RS23860	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
F3090_RS23865	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
F3090_RS23885	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
F3090_RS23905	COG3264	Mechanosensitive ion channel
F3090_RS23905	COG1511	domain protein
F3090_RS23920	COG1053	succinate dehydrogenase
F3090_RS23925	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
F3090_RS23945	COG2076	Multidrug Resistance protein
F3090_RS23950	COG5510	response to toxic substance
F3090_RS23965	COG1509	lysine 2,3-aminomutase activity
F3090_RS23970	COG0745	RESPONSE REGULATOR receiver
F3090_RS24020	COG3539	Fimbrial protein
F3090_RS24040	COG0531	amino acid
F3090_RS24045	COG3030	protein affecting phage T7 exclusion by the F plasmid
F3090_RS24050	COG1027	Aspartate ammonia-lyase
F3090_RS24055	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
F3090_RS24070	COG1309	transcriptional regulator
F3090_RS24100	COG0457	Tetratricopeptide repeat
F3090_RS24105	COG1649	PFAM Uncharacterised BCR, COG1649
F3090_RS24105	COG0726	polysaccharide deacetylase
F3090_RS24110	COG1215	transferase activity, transferring glycosyl groups
F3090_RS24125	COG0861	Integral membrane protein TerC family
F3090_RS24170	COG1486	melibiose metabolic process
F3090_RS24175	COG2169	Transcriptional regulator
F3090_RS24185	COG2824	Alkylphosphonate utilization operon protein PhnA
F3090_RS24190	COG2764	glyoxalase bleomycin resistance protein dioxygenase
F3090_RS24195	COG2188	Transcriptional regulator
F3090_RS24200	COG3624	Phosphonate C-P lyase system protein PhnG
F3090_RS24205	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
F3090_RS24210	COG3626	phosphonate metabolism
F3090_RS24215	COG3627	carbon phosphorus lyase activity
F3090_RS24220	COG4107	phosphonate C-P lyase system protein PhnK
F3090_RS24225	COG4778	phosphonate C-P lyase system protein PhnL
F3090_RS24230	COG3454	Phosphonate metabolism
F3090_RS24240	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
F3090_RS24250	COG0784	Response regulator, receiver
F3090_RS24250	COG4191	Histidine kinase
F3090_RS24255	COG1129	ABC transporter
F3090_RS24260	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS24295	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
F3090_RS24300	COG1301	dicarboxylic acid transport
F3090_RS24310	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
F3090_RS24315	COG3162	membrane
F3090_RS24345	COG3539	Fimbrial protein
F3090_RS24350	COG1346	cytolysis
F3090_RS24355	COG1380	Effector of murein hydrolase LrgA
F3090_RS24360	COG0583	DNA-binding transcription factor activity
F3090_RS24365	COG0025	NhaP-type Na H and K H
F3090_RS24370	COG2252	PERMEase
F3090_RS24375	COG0625	glutathione transferase activity
F3090_RS24380	COG0789	Transcriptional regulator
F3090_RS24390	COG4943	cyclic-guanylate-specific phosphodiesterase activity
F3090_RS24420	COG1234	tRNA 3'-trailer cleavage
F3090_RS24425	COG1609	Transcriptional regulator
F3090_RS24430	COG0483	inositol monophosphate 1-phosphatase activity
F3090_RS24440	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
F3090_RS24460	COG4771	TonB-dependent receptor
F3090_RS24465	COG0741	lytic transglycosylase activity
F3090_RS24480	COG2315	Protein conserved in bacteria
F3090_RS24485	COG0432	Pfam Uncharacterised protein family UPF0047
F3090_RS24500	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
F3090_RS24505	COG0305	Participates in initiation and elongation during chromosome replication
F3090_RS24520	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
F3090_RS24530	COG0735	belongs to the Fur family
F3090_RS24535	COG3237	CsbD-like
F3090_RS24545	COG0534	Mate efflux family protein
F3090_RS24555	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
F3090_RS24625	COG0251	oxidation-reduction process
F3090_RS24635	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
F3090_RS24645	COG0527	aspartate kinase activity
F3090_RS24695	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
F3090_RS24705	COG0456	acetyltransferase
F3090_RS24735	COG0151	Belongs to the GarS family
F3090_RS24745	COG4191	Histidine kinase
F3090_RS24750	COG3678	ATP-independent chaperone mediated protein folding
F3090_RS24785	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
F3090_RS24800	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
F3090_RS24805	COG2104	thiamine diphosphate biosynthetic process
F3090_RS24820	COG3706	GGDEF domain
F3090_RS24830	COG1447	Phosphotransferase system cellobiose-specific component IIA
F3090_RS24835	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
F3090_RS24870	COG0250	Participates in transcription elongation, termination and antitermination
F3090_RS24915	COG0812	UDP-N-acetylmuramate dehydrogenase activity
F3090_RS24945	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
F3090_RS24955	COG1739	Uncharacterized protein family UPF0029
F3090_RS24995	COG0805	protein transport
F3090_RS25015	COG3165	ubiquinone biosynthetic process from chorismate
F3090_RS25045	COG0583	DNA-binding transcription factor activity
F3090_RS25050	COG0697	spore germination
F3090_RS25055	COG0561	phosphatase activity
F3090_RS25060	COG2267	carboxylic ester hydrolase activity
F3090_RS25065	COG1280	lysine exporter protein (LysE YggA)
F3090_RS25075	COG1280	lysine exporter protein (LysE YggA)
F3090_RS25105	COG0210	DNA helicase
F3090_RS25110	COG1011	Hydrolase
F3090_RS25140	COG3072	Adenylate cyclase
F3090_RS25155	COG2959	enzyme of heme biosynthesis
F3090_RS25160	COG3071	HemY protein
F3090_RS25205	COG2244	polysaccharide biosynthetic process
F3090_RS25210	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
F3090_RS25215	COG0456	acetyltransferase
F3090_RS25220	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
F3090_RS25225	COG1088	dTDP-glucose 4,6-dehydratase activity
F3090_RS25230	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
F3090_RS25235	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
F3090_RS25245	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
F3090_RS25250	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
F3090_RS25255	COG3118	belongs to the thioredoxin family
F3090_RS25280	COG1811	Na channel or pump
F3090_RS25290	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
F3090_RS25295	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
F3090_RS25305	COG0583	DNA-binding transcription factor activity
F3090_RS25310	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
F3090_RS25325	COG3978	acetolactate synthase activity
F3090_RS25345	COG3085	chromosome segregation
F3090_RS25420	COG0583	DNA-binding transcription factor activity
F3090_RS25435	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
F3090_RS25450	COG3443	Belongs to the bacterial solute-binding protein 9 family
F3090_RS25455	COG2207	Transcriptional regulator
F3090_RS25465	COG0371	Dehydrogenase
F3090_RS25470	COG0697	spore germination
F3090_RS25480	COG0583	DNA-binding transcription factor activity
F3090_RS25490	COG0737	Belongs to the 5'-nucleotidase family
F3090_RS25500	COG0527	aspartate kinase activity
F3090_RS25500	COG0460	homoserine dehydrogenase
F3090_RS25505	COG0626	cystathionine gamma-synthase activity
F3090_RS25520	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
F3090_RS25525	COG1609	Transcriptional regulator
F3090_RS25530	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
F3090_RS25545	COG1575	Belongs to the MenA family. Type 1 subfamily
F3090_RS25565	COG3678	ATP-independent chaperone mediated protein folding
F3090_RS25570	COG0745	RESPONSE REGULATOR receiver
F3090_RS25575	COG2205	protein histidine kinase activity
F3090_RS25580	COG2258	MOSC domain
F3090_RS25585	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
F3090_RS25625	COG1129	ABC transporter
F3090_RS25630	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS25635	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS25640	COG1454	alcohol dehydrogenase
F3090_RS25650	COG2211	Major facilitator Superfamily
F3090_RS25710	COG0205	6-phosphofructokinase activity
F3090_RS25730	COG0437	4 iron, 4 sulfur cluster binding
F3090_RS25735	COG2864	formate dehydrogenase
F3090_RS25750	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
F3090_RS25760	COG0456	acetyltransferase
F3090_RS25775	COG1011	Hydrolase
F3090_RS25790	COG3852	Histidine kinase
F3090_RS25805	COG0635	Involved in the biosynthesis of porphyrin-containing compound
F3090_RS25825	COG0204	Acyl-transferase
F3090_RS25835	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
F3090_RS25840	COG3084	Protein conserved in bacteria
F3090_RS25850	COG1763	Mo-molybdopterin cofactor biosynthetic process
F3090_RS25875	COG2186	Transcriptional regulator
F3090_RS25880	COG0477	Major facilitator Superfamily
F3090_RS25885	COG1609	Transcriptional regulator
F3090_RS25890	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
F3090_RS25900	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS25905	COG1129	ABC transporter
F3090_RS25935	COG1522	sequence-specific DNA binding
F3090_RS25940	COG0716	FMN binding
F3090_RS25955	COG3312	ion transport
F3090_RS26005	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
F3090_RS26010	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
F3090_RS26015	COG0573	inorganic phosphate transmembrane transporter activity
F3090_RS26020	COG0581	inorganic phosphate transmembrane transporter activity
F3090_RS26025	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
F3090_RS26030	COG0704	Plays a role in the regulation of phosphate uptake
F3090_RS26040	COG2382	esterase
F3090_RS26045	COG0363	glucosamine-6-phosphate deaminase activity
F3090_RS26050	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
F3090_RS26055	COG2252	PERMEase
F3090_RS26060	COG0431	NADPH-dependent FMN reductase
F3090_RS26065	COG2091	lysine biosynthetic process via aminoadipic acid
F3090_RS26095	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
F3090_RS26185	COG1349	DNA-binding transcription factor activity
F3090_RS26190	COG2084	Dehydrogenase
F3090_RS26205	COG5001	Diguanylate cyclase
F3090_RS26240	COG0840	transmembrane signaling receptor activity
F3090_RS26245	COG4372	Transposase
F3090_RS26250	COG3436	PFAM IS66 Orf2 family protein
F3090_RS26305	COG1192	Involved in chromosome partitioning
F3090_RS26385	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
F3090_RS26495	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
F3090_RS26620	COG4974	Belongs to the 'phage' integrase family
F3090_RS26760	COG0616	signal peptide processing
F3090_RS26880	COG5001	Diguanylate cyclase
F3090_RS26880	COG3300	MHYT domain
F3090_RS26995	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
F3090_RS27015	COG1609	Transcriptional regulator
F3090_RS27025	COG1129	ABC transporter
F3090_RS27030	COG1172	Belongs to the binding-protein-dependent transport system permease family
F3090_RS27140	COG1660	Displays ATPase and GTPase activities
F3090_RS27155	COG3250	beta-galactosidase activity
F3090_RS27160	COG1309	transcriptional regulator
F3090_RS27165	COG3039	Transposase
F3090_RS27185	COG1309	transcriptional regulator
F3090_RS27200	COG1136	(ABC) transporter
F3090_RS27235	COG0589	response to stress
F3090_RS27240	COG0659	secondary active sulfate transmembrane transporter activity
F3090_RS27285	COG2826	transposase and inactivated derivatives, IS30 family
F3090_RS27295	COG3436	PFAM IS66 Orf2 family protein
F3090_RS27300	COG2433	Pfam Transposase IS66
F3090_RS27330	COG1121	(ABC) transporter
F3090_RS27365	COG2135	peptidase activity
F3090_RS27415	COG0629	single-stranded DNA binding