locus-tag	class	description
CLQ99_RS00020	COG0187	DNA topoisomerase II activity
CLQ99_RS00025	COG0561	phosphatase activity
CLQ99_RS00040	COG2186	Transcriptional regulator
CLQ99_RS00065	COG2271	Major facilitator Superfamily
CLQ99_RS00070	COG0823	Involved in the tonB-independent uptake of proteins
CLQ99_RS00075	COG5645	(Lipo)protein
CLQ99_RS00090	COG3645	SOS response
CLQ99_RS00100	COG2188	Transcriptional regulator
CLQ99_RS00115	COG2149	membrane
CLQ99_RS00135	COG2610	gluconate transmembrane transporter activity
CLQ99_RS00140	COG0583	DNA-binding transcription factor activity
CLQ99_RS00145	COG2814	Major facilitator Superfamily
CLQ99_RS00170	COG0028	Belongs to the TPP enzyme family
CLQ99_RS00175	COG0440	acetolactate synthase activity
CLQ99_RS00180	COG2197	response regulator
CLQ99_RS00190	COG2271	Major facilitator Superfamily
CLQ99_RS00235	COG2188	Transcriptional regulator
CLQ99_RS00270	COG4580	involved in the transport of maltose and maltodextrins
CLQ99_RS00275	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLQ99_RS00280	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS00280	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS00290	COG1609	Transcriptional regulator
CLQ99_RS00300	COG3384	dioxygenase
CLQ99_RS00305	COG0583	DNA-binding transcription factor activity
CLQ99_RS00310	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CLQ99_RS00315	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CLQ99_RS00320	COG2828	Protein conserved in bacteria
CLQ99_RS00335	COG0697	spore germination
CLQ99_RS00340	COG1263	PTS System
CLQ99_RS00340	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLQ99_RS00350	COG2814	Major facilitator Superfamily
CLQ99_RS00415	COG0583	DNA-binding transcription factor activity
CLQ99_RS00440	COG1464	Belongs to the NlpA lipoprotein family
CLQ99_RS00455	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CLQ99_RS00465	COG1064	alcohol dehydrogenase
CLQ99_RS00500	COG2211	Major facilitator Superfamily
CLQ99_RS00505	COG1501	Belongs to the glycosyl hydrolase 31 family
CLQ99_RS00515	COG1486	melibiose metabolic process
CLQ99_RS00520	COG1263	PTS System
CLQ99_RS00520	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLQ99_RS00525	COG2982	Protein involved in outer membrane biogenesis
CLQ99_RS00530	COG2233	PERMEase
CLQ99_RS00535	COG0786	glutamate:sodium symporter activity
CLQ99_RS00555	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CLQ99_RS00580	COG3152	Membrane
CLQ99_RS00590	COG1494	fructose-1,6-bisphosphatase
CLQ99_RS00595	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CLQ99_RS00600	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLQ99_RS00605	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CLQ99_RS00625	COG2860	membrane
CLQ99_RS00635	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CLQ99_RS00635	COG2169	Transcriptional regulator
CLQ99_RS00640	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CLQ99_RS00645	COG1561	YicC-like family, N-terminal region
CLQ99_RS00655	COG3039	Transposase
CLQ99_RS00670	COG1131	(ABC) transporter
CLQ99_RS00675	COG0842	Transport permease protein
CLQ99_RS00700	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CLQ99_RS00735	COG1519	Transferase
CLQ99_RS00740	COG1216	Glycosyl transferase, family 2
CLQ99_RS00745	COG0438	transferase activity, transferring glycosyl groups
CLQ99_RS00755	COG0859	PFAM glycosyl transferase family 9
CLQ99_RS00780	COG0859	PFAM glycosyl transferase family 9
CLQ99_RS00795	COG0156	8-amino-7-oxononanoate synthase activity
CLQ99_RS00805	COG0463	Glycosyl transferase, family 2
CLQ99_RS00810	COG2861	carbohydrate metabolic process
CLQ99_RS00815	COG4942	peptidase
CLQ99_RS00825	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLQ99_RS00830	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CLQ99_RS00850	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CLQ99_RS00860	COG2186	Transcriptional regulator
CLQ99_RS00880	COG3722	fumarate hydratase activity
CLQ99_RS00900	COG1566	PFAM secretion protein HlyD family protein
CLQ99_RS00905	COG0625	glutathione transferase activity
CLQ99_RS00915	COG3276	selenocysteine insertion sequence binding
CLQ99_RS00920	COG1414	Transcriptional regulator
CLQ99_RS00925	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLQ99_RS00930	COG3977	Valine--pyruvate aminotransferase
CLQ99_RS00935	COG0366	Alpha amylase catalytic
CLQ99_RS00940	COG2992	FlgJ-related protein
CLQ99_RS00945	COG2207	Transcriptional regulator
CLQ99_RS00945	COG1609	Transcriptional regulator
CLQ99_RS00950	COG4214	carbohydrate transport
CLQ99_RS00960	COG4213	ABC transporter substrate-binding protein
CLQ99_RS00980	COG4682	membrane
CLQ99_RS00985	COG4682	membrane
CLQ99_RS00990	COG3274	enterobacterial common antigen metabolic process
CLQ99_RS01030	COG1278	Cold shock
CLQ99_RS01035	COG2944	sequence-specific DNA binding
CLQ99_RS01040	COG2814	Major facilitator Superfamily
CLQ99_RS01065	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS01075	COG1609	Transcriptional regulator
CLQ99_RS01080	COG2885	chlorophyll binding
CLQ99_RS01085	COG0243	molybdopterin cofactor binding
CLQ99_RS01090	COG0456	acetyltransferase
CLQ99_RS01095	COG2818	Glycosylase
CLQ99_RS01100	COG5571	outer membrane autotransporter
CLQ99_RS01105	COG2223	nitrite transmembrane transporter activity
CLQ99_RS01135	COG0747	negative chemotaxis
CLQ99_RS01140	COG0601	transmembrane transport
CLQ99_RS01145	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLQ99_RS01150	COG0444	Belongs to the ABC transporter superfamily
CLQ99_RS01155	COG4608	Belongs to the ABC transporter superfamily
CLQ99_RS01180	COG1215	transferase activity, transferring glycosyl groups
CLQ99_RS01185	COG0457	Tetratricopeptide repeat
CLQ99_RS01200	COG2194	sulfuric ester hydrolase activity
CLQ99_RS01230	COG1215	transferase activity, transferring glycosyl groups
CLQ99_RS01235	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
CLQ99_RS01240	COG3118	belongs to the thioredoxin family
CLQ99_RS01240	COG0457	Tetratricopeptide repeat
CLQ99_RS01245	COG2199	diguanylate cyclase activity
CLQ99_RS01245	COG2200	EAL domain
CLQ99_RS01255	COG0612	Peptidase, M16
CLQ99_RS01270	COG2982	Protein involved in outer membrane biogenesis
CLQ99_RS01275	COG0477	Major facilitator Superfamily
CLQ99_RS01280	COG1295	ribonuclease BN
CLQ99_RS01285	COG0583	DNA-binding transcription factor activity
CLQ99_RS01290	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS01295	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLQ99_RS01305	COG1454	alcohol dehydrogenase
CLQ99_RS01315	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLQ99_RS01320	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CLQ99_RS01325	COG0671	phosphoesterase, PA-phosphatase related
CLQ99_RS01345	COG0589	response to stress
CLQ99_RS01355	COG0306	phosphate transporter
CLQ99_RS01360	COG2081	HI0933 family
CLQ99_RS01365	COG2239	Acts as a magnesium transporter
CLQ99_RS01375	COG1124	(ABC) transporter
CLQ99_RS01385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLQ99_RS01390	COG0601	transmembrane transport
CLQ99_RS01395	COG0747	negative chemotaxis
CLQ99_RS01410	COG3479	Phenolic acid decarboxylase
CLQ99_RS01450	COG0628	permease
CLQ99_RS01455	COG0477	Major facilitator Superfamily
CLQ99_RS01465	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CLQ99_RS01480	COG3714	YhhN family
CLQ99_RS01490	COG3776	membrane
CLQ99_RS01495	COG0742	ribosomal rna small subunit methyltransferase
CLQ99_RS01500	COG0552	protein localization to endoplasmic reticulum
CLQ99_RS01505	COG2884	Cell division ATP-binding protein ftsE
CLQ99_RS01510	COG2177	Part of the ABC transporter FtsEX involved in
CLQ99_RS01525	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CLQ99_RS01535	COG0683	leucine binding
CLQ99_RS01550	COG0683	leucine binding
CLQ99_RS01555	COG0559	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS01605	COG0584	glycerophosphoryl diester phosphodiesterase
CLQ99_RS01615	COG0405	Gamma-glutamyltransferase
CLQ99_RS01620	COG1247	-acetyltransferase
CLQ99_RS01630	COG0673	inositol 2-dehydrogenase activity
CLQ99_RS01635	COG1741	Belongs to the pirin family
CLQ99_RS01640	COG1609	Transcriptional regulator
CLQ99_RS01645	COG3265	gluconokinase activity
CLQ99_RS01650	COG2610	gluconate transmembrane transporter activity
CLQ99_RS01660	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CLQ99_RS01685	COG0058	SHG alpha-glucan phosphorylase activity
CLQ99_RS01700	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CLQ99_RS01715	COG1349	DNA-binding transcription factor activity
CLQ99_RS01730	COG0058	SHG alpha-glucan phosphorylase activity
CLQ99_RS01735	COG1640	4-alpha-glucanotransferase
CLQ99_RS01740	COG2610	gluconate transmembrane transporter activity
CLQ99_RS01750	COG1040	competence protein
CLQ99_RS01775	COG1918	ferrous iron import across plasma membrane
CLQ99_RS01780	COG2183	response to ionizing radiation
CLQ99_RS01785	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CLQ99_RS01810	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CLQ99_RS01815	COG1011	Hydrolase
CLQ99_RS01825	COG0494	nUDIX hydrolase
CLQ99_RS01830	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CLQ99_RS01855	COG4796	Type ii and iii secretion system protein
CLQ99_RS01875	COG3266	domain, Protein
CLQ99_RS01880	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CLQ99_RS01885	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CLQ99_RS01910	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CLQ99_RS01915	COG0402	S-adenosylhomocysteine deaminase activity
CLQ99_RS01920	COG0738	Major facilitator superfamily
CLQ99_RS01945	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CLQ99_RS01950	COG1289	transmembrane transporter activity
CLQ99_RS01960	COG1765	OsmC-like protein
CLQ99_RS01965	COG3954	Phosphoribulokinase
CLQ99_RS01975	COG0429	hydrolase of the alpha beta-hydrolase fold
CLQ99_RS01985	COG0488	(ABC) transporter
CLQ99_RS02000	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CLQ99_RS02005	COG1047	Peptidyl-prolyl cis-trans
CLQ99_RS02015	COG0545	Peptidyl-prolyl cis-trans isomerase
CLQ99_RS02020	COG2964	Protein conserved in bacteria
CLQ99_RS02075	COG0051	transcription antitermination factor activity, RNA binding
CLQ99_RS02100	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CLQ99_RS02115	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CLQ99_RS02180	COG0201	protein transport
CLQ99_RS02205	COG0202	RNA polymerase activity
CLQ99_RS02220	COG0789	Transcriptional regulator
CLQ99_RS02225	COG3036	rescue of stalled ribosome
CLQ99_RS02255	COG0758	DNA mediated transformation
CLQ99_RS02265	COG0551	DNA topoisomerase type I activity
CLQ99_RS02285	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CLQ99_RS02320	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CLQ99_RS02325	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLQ99_RS02330	COG1309	transcriptional regulator
CLQ99_RS02335	COG0582	viral genome integration into host DNA
CLQ99_RS02350	COG3561	AntA/AntB antirepressor
CLQ99_RS02440	COG4626	Terminase
CLQ99_RS02440	COG1802	Transcriptional regulator
CLQ99_RS02470	COG4145	pantothenate transmembrane transporter activity
CLQ99_RS02475	COG3924	membrane
CLQ99_RS02480	COG0439	Biotin carboxylase
CLQ99_RS02485	COG0511	ligase activity, forming carbon-carbon bonds
CLQ99_RS02510	COG2200	EAL domain
CLQ99_RS02510	COG2199	diguanylate cyclase activity
CLQ99_RS02515	COG1077	Cell shape determining protein MreB Mrl
CLQ99_RS02520	COG1792	Involved in formation and maintenance of cell shape
CLQ99_RS02525	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CLQ99_RS02535	COG1530	ribonuclease E activity
CLQ99_RS02540	COG3164	Protein of unknown function
CLQ99_RS02545	COG0312	modulator of DNA gyrase
CLQ99_RS02550	COG0583	DNA-binding transcription factor activity
CLQ99_RS02565	COG1289	transmembrane transporter activity
CLQ99_RS02570	COG2732	(Barnase) inhibitor
CLQ99_RS02595	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLQ99_RS02600	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLQ99_RS02605	COG3105	Protein conserved in bacteria
CLQ99_RS02610	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CLQ99_RS02630	COG0625	glutathione transferase activity
CLQ99_RS02635	COG2969	positive regulation of protein catabolic process
CLQ99_RS02645	COG0493	'glutamate synthase
CLQ99_RS02650	COG0070	glutamate synthase
CLQ99_RS02650	COG0069	glutamate synthase activity
CLQ99_RS02650	COG0067	glutamate synthase
CLQ99_RS02655	COG1242	4 iron, 4 sulfur cluster binding
CLQ99_RS02660	COG2271	Major facilitator Superfamily
CLQ99_RS02665	COG1063	alcohol dehydrogenase
CLQ99_RS02670	COG1312	Catalyzes the dehydration of D-mannonate
CLQ99_RS02675	COG2198	Histidine kinase
CLQ99_RS02675	COG5002	protein histidine kinase activity
CLQ99_RS02675	COG0784	Response regulator, receiver
CLQ99_RS02680	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CLQ99_RS02685	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CLQ99_RS02690	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS02700	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS02705	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CLQ99_RS02710	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CLQ99_RS02715	COG1137	ATPase activity
CLQ99_RS02720	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CLQ99_RS02725	COG3117	lipopolysaccharide transmembrane transporter activity
CLQ99_RS02730	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CLQ99_RS02740	COG0530	calcium, potassium:sodium antiporter activity
CLQ99_RS02750	COG1127	ABC transporter
CLQ99_RS02755	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CLQ99_RS02760	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CLQ99_RS02765	COG2854	intermembrane phospholipid transfer
CLQ99_RS02770	COG3113	response to antibiotic
CLQ99_RS02775	COG5007	Belongs to the BolA IbaG family
CLQ99_RS02785	COG3423	Transcriptional regulator
CLQ99_RS02790	COG0142	geranyltranstransferase activity
CLQ99_RS02805	COG0697	spore germination
CLQ99_RS02815	COG2027	D-alanyl-D-alanine carboxypeptidase
CLQ99_RS02825	COG1534	Rna-binding protein
CLQ99_RS02835	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CLQ99_RS02840	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CLQ99_RS02850	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CLQ99_RS02890	COG0195	Participates in both transcription termination and antitermination
CLQ99_RS02940	COG0814	amino acid
CLQ99_RS02945	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLQ99_RS02950	COG0826	peptidase U32
CLQ99_RS02955	COG0826	peptidase U32
CLQ99_RS02960	COG3154	lipid carrier protein
CLQ99_RS02965	COG3153	acetyltransferase
CLQ99_RS02980	COG0693	protein deglycase activity
CLQ99_RS02985	COG0702	epimerase
CLQ99_RS02990	COG0701	Predicted permease
CLQ99_RS02995	COG2823	Periplasmic or secreted lipoprotein
CLQ99_RS03015	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CLQ99_RS03030	COG1063	alcohol dehydrogenase
CLQ99_RS03035	COG3775	system Galactitol-specific IIC component
CLQ99_RS03040	COG3414	Phosphotransferase system galactitol-specific IIB component
CLQ99_RS03045	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS03055	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS03055	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS03060	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS03060	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLQ99_RS03060	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLQ99_RS03065	COG1105	Belongs to the carbohydrate kinase PfkB family
CLQ99_RS03075	COG1349	DNA-binding transcription factor activity
CLQ99_RS03080	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS03085	COG2721	sulfolactate sulfo-lyase activity
CLQ99_RS03095	COG2271	Major facilitator Superfamily
CLQ99_RS03105	COG2084	Dehydrogenase
CLQ99_RS03110	COG1929	Belongs to the glycerate kinase type-1 family
CLQ99_RS03130	COG1741	Belongs to the pirin family
CLQ99_RS03135	COG0583	DNA-binding transcription factor activity
CLQ99_RS03140	COG3152	Membrane
CLQ99_RS03145	COG0435	Glutathione S-transferase
CLQ99_RS03150	COG2259	Doxx family
CLQ99_RS03160	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
CLQ99_RS03165	COG4575	ribosome binding
CLQ99_RS03170	COG1422	Protein of unknown function (DUF1090)
CLQ99_RS03180	COG0586	Pfam SNARE associated Golgi protein
CLQ99_RS03185	COG2186	Transcriptional regulator
CLQ99_RS03190	COG2271	Major facilitator Superfamily
CLQ99_RS03200	COG2721	sulfolactate sulfo-lyase activity
CLQ99_RS03215	COG0861	Integral membrane protein TerC family
CLQ99_RS03220	COG0673	inositol 2-dehydrogenase activity
CLQ99_RS03225	COG1451	nucleotide metabolic process
CLQ99_RS03245	COG1902	pentaerythritol trinitrate reductase activity
CLQ99_RS03245	COG0446	pyridine nucleotide-disulphide oxidoreductase
CLQ99_RS03295	COG1695	Transcriptional regulator
CLQ99_RS03300	COG2375	cellular response to nickel ion
CLQ99_RS03315	COG1461	Dihydroxyacetone kinase
CLQ99_RS03320	COG2376	Dihydroxyacetone kinase
CLQ99_RS03405	COG3247	response to pH
CLQ99_RS03415	COG0784	Response regulator, receiver
CLQ99_RS03415	COG2198	Histidine kinase
CLQ99_RS03415	COG2205	protein histidine kinase activity
CLQ99_RS03415	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS03420	COG2197	response regulator
CLQ99_RS03445	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CLQ99_RS03450	COG0358	DNA primase activity
CLQ99_RS03455	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CLQ99_RS03520	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CLQ99_RS03535	COG4991	sh3 domain protein
CLQ99_RS03540	COG3025	triphosphatase activity
CLQ99_RS03560	COG2960	long-chain fatty acid transporting porin activity
CLQ99_RS03575	COG3384	dioxygenase
CLQ99_RS03580	COG0754	glutathionylspermidine amidase activity
CLQ99_RS03595	COG0494	nUDIX hydrolase
CLQ99_RS03600	COG3151	Protein conserved in bacteria
CLQ99_RS03605	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CLQ99_RS03610	COG3150	esterase
CLQ99_RS03620	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CLQ99_RS03625	COG2249	NAD(P)H dehydrogenase (quinone) activity
CLQ99_RS03630	COG0642	Histidine kinase
CLQ99_RS03640	COG3111	PFAM Bacterial OB fold (BOF) protein
CLQ99_RS03645	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
CLQ99_RS03650	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CLQ99_RS03655	COG0204	Acyl-transferase
CLQ99_RS03660	COG2132	Multicopper oxidase
CLQ99_RS03665	COG1032	radical SAM domain protein
CLQ99_RS03675	COG0656	L-ascorbic acid biosynthetic process
CLQ99_RS03680	COG1979	alcohol dehydrogenase
CLQ99_RS03685	COG2207	Transcriptional regulator
CLQ99_RS03690	COG0586	Pfam SNARE associated Golgi protein
CLQ99_RS03695	COG0626	cystathionine gamma-synthase activity
CLQ99_RS03705	COG0848	biopolymer transport protein
CLQ99_RS03710	COG2211	Major facilitator Superfamily
CLQ99_RS03735	COG0625	glutathione transferase activity
CLQ99_RS03745	COG0754	glutathionylspermidine amidase activity
CLQ99_RS03750	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLQ99_RS03770	COG0583	DNA-binding transcription factor activity
CLQ99_RS03775	COG0626	cystathionine gamma-synthase activity
CLQ99_RS04035	COG3423	Transcriptional regulator
CLQ99_RS04045	COG1278	Cold shock
CLQ99_RS04050	COG3423	Transcriptional regulator
CLQ99_RS04070	COG3039	Transposase
CLQ99_RS04115	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CLQ99_RS04125	COG1811	Na channel or pump
CLQ99_RS04135	COG1982	Orn Lys Arg decarboxylase major
CLQ99_RS04140	COG2211	Major facilitator Superfamily
CLQ99_RS04155	COG1194	a g-specific adenine glycosylase
CLQ99_RS04165	COG3171	Protein conserved in bacteria
CLQ99_RS04175	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CLQ99_RS04190	COG0762	integral membrane protein
CLQ99_RS04195	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CLQ99_RS04200	COG2805	Type II/IV secretion system protein
CLQ99_RS04220	COG0189	ligase activity
CLQ99_RS04225	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CLQ99_RS04230	COG2356	endonuclease I
CLQ99_RS04240	COG2814	Major facilitator Superfamily
CLQ99_RS04280	COG2146	nitrite reductase [NAD(P)H] activity
CLQ99_RS04295	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS04300	COG1414	Transcriptional regulator
CLQ99_RS04330	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS04335	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
CLQ99_RS04365	COG0501	Belongs to the peptidase M48B family
CLQ99_RS04370	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CLQ99_RS04385	COG0191	fructose-bisphosphate aldolase activity
CLQ99_RS04390	COG0668	transmembrane transport
CLQ99_RS04400	COG2968	Membrane
CLQ99_RS04415	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CLQ99_RS04420	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CLQ99_RS04440	COG0006	proline dipeptidase activity
CLQ99_RS04445	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CLQ99_RS04450	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CLQ99_RS04470	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS04475	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLQ99_RS04495	COG2723	6-phospho-beta-galactosidase activity
CLQ99_RS04500	COG1737	Transcriptional regulator
CLQ99_RS04510	COG1272	protein, Hemolysin III
CLQ99_RS04520	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CLQ99_RS04530	COG0716	FMN binding
CLQ99_RS04535	COG4974	Belongs to the 'phage' integrase family
CLQ99_RS04545	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CLQ99_RS04565	COG4942	peptidase
CLQ99_RS04575	COG2814	Major facilitator Superfamily
CLQ99_RS04590	COG0667	Aldo Keto reductase
CLQ99_RS04625	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CLQ99_RS04630	COG1393	Belongs to the ArsC family
CLQ99_RS04645	COG1538	Outer membrane efflux protein
CLQ99_RS04650	COG1289	transmembrane transporter activity
CLQ99_RS04665	COG3592	Divergent 4Fe-4S mono-cluster
CLQ99_RS04670	COG2388	GCN5-related N-acetyl-transferase
CLQ99_RS04680	COG3539	Fimbrial protein
CLQ99_RS04685	COG3539	Fimbrial protein
CLQ99_RS04690	COG3539	Fimbrial protein
CLQ99_RS04695	COG3188	usher protein
CLQ99_RS04700	COG3121	Chaperone
CLQ99_RS04705	COG3539	Fimbrial protein
CLQ99_RS04715	COG4974	Belongs to the 'phage' integrase family
CLQ99_RS04720	COG0582	viral genome integration into host DNA
CLQ99_RS04730	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CLQ99_RS04735	COG1846	Transcriptional regulator
CLQ99_RS04740	COG0697	spore germination
CLQ99_RS04750	COG3039	Transposase
CLQ99_RS04795	COG0667	Aldo Keto reductase
CLQ99_RS04800	COG0814	amino acid
CLQ99_RS04815	COG0183	Belongs to the thiolase family
CLQ99_RS04825	COG0823	Involved in the tonB-independent uptake of proteins
CLQ99_RS04830	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS04835	COG2814	Major facilitator Superfamily
CLQ99_RS04865	COG3842	ATPase activity
CLQ99_RS04870	COG0395	ABC-type sugar transport system, permease component
CLQ99_RS04875	COG1175	transmembrane transport
CLQ99_RS04880	COG1917	Cupin 2, conserved barrel domain protein
CLQ99_RS04885	COG1794	racemase activity, acting on amino acids and derivatives
CLQ99_RS04890	COG0583	DNA-binding transcription factor activity
CLQ99_RS04900	COG1609	Transcriptional regulator
CLQ99_RS04905	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS04910	COG2723	6-phospho-beta-galactosidase activity
CLQ99_RS04915	COG2186	Transcriptional regulator
CLQ99_RS04925	COG1609	Transcriptional regulator
CLQ99_RS04950	COG0667	Aldo Keto reductase
CLQ99_RS04960	COG0861	Integral membrane protein TerC family
CLQ99_RS04995	COG2165	general secretion pathway protein
CLQ99_RS05000	COG4795	General secretion pathway protein
CLQ99_RS05010	COG4967	type IV pilus modification protein PilV
CLQ99_RS05015	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CLQ99_RS05020	COG1025	Belongs to the peptidase M16 family
CLQ99_RS05025	COG1074	ATP-dependent DNA helicase activity
CLQ99_RS05030	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CLQ99_RS05040	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CLQ99_RS05040	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CLQ99_RS05045	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLQ99_RS05050	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CLQ99_RS05080	COG4656	Part of a membrane complex involved in electron transport
CLQ99_RS05085	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS05085	COG1454	alcohol dehydrogenase
CLQ99_RS05115	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CLQ99_RS05280	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CLQ99_RS05285	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CLQ99_RS05290	COG2166	iron-sulfur cluster assembly
CLQ99_RS05295	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CLQ99_RS05305	COG0583	DNA-binding transcription factor activity
CLQ99_RS05310	COG2363	Small membrane protein
CLQ99_RS05320	COG1349	DNA-binding transcription factor activity
CLQ99_RS05340	COG0738	Major facilitator superfamily
CLQ99_RS05345	COG0235	Class ii aldolase
CLQ99_RS05350	COG1454	alcohol dehydrogenase
CLQ99_RS05365	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLQ99_RS05380	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CLQ99_RS05385	COG2011	ABC-type metal ion transport system permease component
CLQ99_RS05390	COG1464	Belongs to the NlpA lipoprotein family
CLQ99_RS05400	COG0477	Major facilitator Superfamily
CLQ99_RS05410	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLQ99_RS05415	COG1760	l-serine dehydratase
CLQ99_RS05420	COG0814	amino acid
CLQ99_RS05425	COG1611	Belongs to the LOG family
CLQ99_RS05440	COG3098	single-species biofilm formation
CLQ99_RS05445	COG0564	pseudouridine synthase activity
CLQ99_RS05450	COG0716	FMN binding
CLQ99_RS05455	COG2271	Major facilitator Superfamily
CLQ99_RS05460	COG4948	Mandelate Racemase Muconate Lactonizing
CLQ99_RS05465	COG4948	Mandelate Racemase Muconate Lactonizing
CLQ99_RS05470	COG1929	Belongs to the glycerate kinase type-1 family
CLQ99_RS05480	COG4999	Histidine kinase
CLQ99_RS05480	COG3850	Histidine kinase
CLQ99_RS05480	COG3437	response regulator, receiver
CLQ99_RS05480	COG2205	protein histidine kinase activity
CLQ99_RS05490	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CLQ99_RS05495	COG3956	TIGRFAM MazG family protein
CLQ99_RS05515	COG0602	queuosine metabolic process
CLQ99_RS05520	COG0720	synthase
CLQ99_RS05540	COG2234	aminopeptidase activity
CLQ99_RS05600	COG1388	LysM domain
CLQ99_RS05600	COG4942	peptidase
CLQ99_RS05605	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CLQ99_RS05630	COG0163	prenyltransferase activity
CLQ99_RS05635	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CLQ99_RS05680	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS05685	COG4558	Periplasmic binding protein
CLQ99_RS05690	COG3720	iron ion transport
CLQ99_RS05710	COG0679	Auxin Efflux Carrier
CLQ99_RS05725	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLQ99_RS05730	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLQ99_RS05735	COG1121	(ABC) transporter
CLQ99_RS05740	COG0803	Belongs to the bacterial solute-binding protein 9 family
CLQ99_RS05745	COG1609	Transcriptional regulator
CLQ99_RS05750	COG1940	carbohydrate kinase activity
CLQ99_RS05755	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLQ99_RS05760	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS05765	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS05770	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS05780	COG4580	involved in the transport of maltose and maltodextrins
CLQ99_RS05790	COG2723	6-phospho-beta-galactosidase activity
CLQ99_RS05800	COG0309	Hydrogenase expression formation protein (HypE)
CLQ99_RS05805	COG0409	Hydrogenase expression formation protein
CLQ99_RS05810	COG0298	carbon dioxide binding
CLQ99_RS05815	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CLQ99_RS05835	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLQ99_RS05840	COG0651	ATP synthesis coupled electron transport
CLQ99_RS05845	COG0650	Formate hydrogenlyase subunit 4
CLQ99_RS05850	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CLQ99_RS05850	COG3261	NADH dehydrogenase
CLQ99_RS05855	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CLQ99_RS05860	COG3260	NADH ubiquinone oxidoreductase 20
CLQ99_RS05870	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CLQ99_RS05880	COG2723	6-phospho-beta-galactosidase activity
CLQ99_RS05885	COG1263	PTS System
CLQ99_RS05885	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLQ99_RS05890	COG1609	Transcriptional regulator
CLQ99_RS05895	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLQ99_RS05900	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CLQ99_RS05905	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CLQ99_RS05935	COG1349	DNA-binding transcription factor activity
CLQ99_RS05940	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS05945	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS05955	COG3732	PTS system glucitol sorbitol-specific
CLQ99_RS05960	COG3730	PTS system glucitol sorbitol-specific
CLQ99_RS05965	COG2951	lytic endotransglycosylase activity
CLQ99_RS05975	COG1121	(ABC) transporter
CLQ99_RS05980	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLQ99_RS05985	COG0803	Belongs to the bacterial solute-binding protein 9 family
CLQ99_RS05990	COG1546	Belongs to the CinA family
CLQ99_RS06015	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CLQ99_RS06045	COG2823	Periplasmic or secreted lipoprotein
CLQ99_RS06050	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLQ99_RS06055	COG1238	metal cluster binding
CLQ99_RS06075	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CLQ99_RS06080	COG2814	Major facilitator Superfamily
CLQ99_RS06085	COG1566	PFAM secretion protein HlyD family protein
CLQ99_RS06090	COG1846	Transcriptional regulator
CLQ99_RS06100	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CLQ99_RS06110	COG4176	ABC-type proline glycine betaine transport system permease component
CLQ99_RS06125	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CLQ99_RS06135	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CLQ99_RS06140	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CLQ99_RS06145	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLQ99_RS06150	COG4575	ribosome binding
CLQ99_RS06175	COG2916	Histone family protein nucleoid-structuring protein H-NS
CLQ99_RS06190	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CLQ99_RS06195	COG0640	Transcriptional regulator
CLQ99_RS06205	COG0583	DNA-binding transcription factor activity
CLQ99_RS06210	COG3284	Transcriptional regulator
CLQ99_RS06220	COG3539	Fimbrial protein
CLQ99_RS06225	COG3121	Chaperone
CLQ99_RS06260	COG4974	Belongs to the 'phage' integrase family
CLQ99_RS06295	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CLQ99_RS06315	COG3344	reverse transcriptase
CLQ99_RS06350	COG4695	Portal protein
CLQ99_RS06515	COG2867	negative regulation of translational initiation
CLQ99_RS06530	COG0497	DNA recombination
CLQ99_RS06550	COG4536	flavin adenine dinucleotide binding
CLQ99_RS06555	COG4137	Cytochrome C assembly protein
CLQ99_RS06560	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CLQ99_RS06595	COG2885	chlorophyll binding
CLQ99_RS06600	COG2199	diguanylate cyclase activity
CLQ99_RS06610	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CLQ99_RS06615	COG0287	Prephenate dehydrogenase
CLQ99_RS06615	COG1605	Chorismate mutase
CLQ99_RS06625	COG0077	Prephenate dehydratase
CLQ99_RS06625	COG1605	Chorismate mutase
CLQ99_RS06635	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CLQ99_RS06640	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CLQ99_RS06655	COG0542	response to heat
CLQ99_RS06680	COG0477	Major facilitator Superfamily
CLQ99_RS06685	COG5544	Lipoprotein
CLQ99_RS06690	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLQ99_RS06700	COG3148	PFAM DTW domain containing protein
CLQ99_RS06705	COG3118	belongs to the thioredoxin family
CLQ99_RS06710	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLQ99_RS06725	COG0513	Belongs to the DEAD box helicase family
CLQ99_RS06735	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CLQ99_RS06750	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
CLQ99_RS06755	COG3026	antisigma factor binding
CLQ99_RS06760	COG3086	response to oxidative stress
CLQ99_RS06770	COG0681	Belongs to the peptidase S26 family
CLQ99_RS06790	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CLQ99_RS06800	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLQ99_RS06805	COG1737	Transcriptional regulator
CLQ99_RS06810	COG0560	Phosphoserine phosphatase
CLQ99_RS06825	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CLQ99_RS06825	COG0047	phosphoribosylformylglycinamidine synthase activity
CLQ99_RS06830	COG2205	protein histidine kinase activity
CLQ99_RS06835	COG3170	Tfp pilus assembly protein FimV
CLQ99_RS06840	COG2204	response regulator
CLQ99_RS06845	COG0347	Belongs to the P(II) protein family
CLQ99_RS06850	COG1017	nitric oxide dioxygenase activity
CLQ99_RS06850	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CLQ99_RS06860	COG2259	Doxx family
CLQ99_RS06865	COG1940	carbohydrate kinase activity
CLQ99_RS06870	COG0457	Tetratricopeptide repeat
CLQ99_RS06875	COG2814	Major facilitator Superfamily
CLQ99_RS06875	COG0477	Major facilitator Superfamily
CLQ99_RS06880	COG2017	converts alpha-aldose to the beta-anomer
CLQ99_RS06885	COG2814	Major facilitator Superfamily
CLQ99_RS06890	COG3711	transcriptional antiterminator
CLQ99_RS06895	COG3683	transport system, periplasmic component
CLQ99_RS06900	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
CLQ99_RS06930	COG0822	iron-sulfur transferase activity
CLQ99_RS06950	COG0633	Ferredoxin
CLQ99_RS06955	COG2975	iron-sulfur cluster assembly
CLQ99_RS06975	COG2897	thiosulfate sulfurtransferase activity
CLQ99_RS06980	COG2373	Large extracellular alpha-helical protein
CLQ99_RS06985	COG4953	penicillin-binding protein 1C
CLQ99_RS07020	COG2976	Protein conserved in bacteria
CLQ99_RS07040	COG1645	bacterial-type flagellum-dependent swarming motility
CLQ99_RS07050	COG0517	IMP dehydrogenase activity
CLQ99_RS07050	COG0516	GMP reductase activity
CLQ99_RS07100	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CLQ99_RS07180	COG3344	reverse transcriptase
CLQ99_RS07195	COG3728	DNA packaging
CLQ99_RS07195	COG5484	DNA packaging
CLQ99_RS07325	COG3039	Transposase
CLQ99_RS07360	COG3179	chitinase
CLQ99_RS07370	COG3119	arylsulfatase activity
CLQ99_RS07375	COG0641	radical SAM
CLQ99_RS07395	COG2200	EAL domain
CLQ99_RS07410	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CLQ99_RS07425	COG2723	6-phospho-beta-galactosidase activity
CLQ99_RS07435	COG2233	PERMEase
CLQ99_RS07450	COG1393	Belongs to the ArsC family
CLQ99_RS07455	COG4783	chaperone-mediated protein folding
CLQ99_RS07460	COG0628	permease
CLQ99_RS07465	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CLQ99_RS07470	COG2716	regulation of RNA biosynthetic process
CLQ99_RS07480	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CLQ99_RS07490	COG2321	neutral zinc metallopeptidase
CLQ99_RS07495	COG1444	tRNA N-acetyltransferase activity
CLQ99_RS07500	COG0400	carboxylic ester hydrolase activity
CLQ99_RS07515	COG1393	Belongs to the ArsC family
CLQ99_RS07525	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CLQ99_RS07535	COG0493	'glutamate synthase
CLQ99_RS07535	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CLQ99_RS07545	COG5342	invasion associated locus B
CLQ99_RS07550	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CLQ99_RS07555	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CLQ99_RS07565	COG4810	utilization protein
CLQ99_RS07655	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLQ99_RS07675	COG2837	iron assimilation
CLQ99_RS07685	COG4150	thiosulfate binding
CLQ99_RS07690	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CLQ99_RS07695	COG4208	sulfate ABC transporter
CLQ99_RS07700	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CLQ99_RS07710	COG4319	ketosteroid isomerase
CLQ99_RS07745	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CLQ99_RS07765	COG3530	Putative quorum-sensing-regulated virulence factor
CLQ99_RS07770	COG0385	Bile acid
CLQ99_RS07775	COG0583	DNA-binding transcription factor activity
CLQ99_RS07810	COG3415	Transposase
CLQ99_RS07815	COG3415	Transposase
CLQ99_RS07830	COG2200	EAL domain
CLQ99_RS07830	COG2199	diguanylate cyclase activity
CLQ99_RS07835	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CLQ99_RS07850	COG0667	Aldo Keto reductase
CLQ99_RS07855	COG3961	Belongs to the TPP enzyme family
CLQ99_RS07870	COG3279	Response regulator of the LytR AlgR family
CLQ99_RS07875	COG3275	phosphorelay sensor kinase activity
CLQ99_RS07885	COG0436	Aminotransferase
CLQ99_RS07895	COG2807	transmembrane transport
CLQ99_RS07900	COG0590	tRNA wobble adenosine to inosine editing
CLQ99_RS07905	COG0583	DNA-binding transcription factor activity
CLQ99_RS07925	COG2116	formate transmembrane transporter activity
CLQ99_RS07930	COG2853	Lipoprotein
CLQ99_RS07940	COG3691	Protein conserved in bacteria
CLQ99_RS07955	COG2062	phosphohistidine phosphatase, SixA
CLQ99_RS07980	COG0730	response to heat
CLQ99_RS07985	COG3101	peptidyl-lysine hydroxylation
CLQ99_RS08000	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CLQ99_RS08020	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CLQ99_RS08030	COG0586	Pfam SNARE associated Golgi protein
CLQ99_RS08040	COG0285	dihydrofolate synthase activity
CLQ99_RS08045	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
CLQ99_RS08050	COG1286	toxin biosynthetic process
CLQ99_RS08055	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CLQ99_RS08060	COG0163	prenyltransferase activity
CLQ99_RS08080	COG4160	amino acid transport
CLQ99_RS08085	COG4598	ABC transporter
CLQ99_RS08095	COG1090	epimerase
CLQ99_RS08100	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CLQ99_RS08105	COG0625	glutathione transferase activity
CLQ99_RS08110	COG0625	glutathione transferase activity
CLQ99_RS08115	COG0622	Phosphoesterase
CLQ99_RS08120	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
CLQ99_RS08125	COG0280	phosphate acetyltransferase
CLQ99_RS08125	COG0857	belongs to the CobB CobQ family
CLQ99_RS08145	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLQ99_RS08150	COG0471	metal ion transport
CLQ99_RS08150	COG0490	domain, Protein
CLQ99_RS08160	COG0436	Aminotransferase
CLQ99_RS08165	COG0583	DNA-binding transcription factor activity
CLQ99_RS08215	COG0839	Belongs to the complex I subunit 6 family
CLQ99_RS08225	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CLQ99_RS08230	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CLQ99_RS08245	COG2153	protein acetylation
CLQ99_RS08250	COG1169	isochorismate synthase
CLQ99_RS08275	COG0318	PFAM AMP-dependent synthetase and ligase
CLQ99_RS08285	COG5464	transposase or invertase
CLQ99_RS08300	COG1414	Transcriptional regulator
CLQ99_RS08310	COG2271	Major facilitator Superfamily
CLQ99_RS08320	COG0247	lactate metabolic process
CLQ99_RS08330	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CLQ99_RS08335	COG2271	Major facilitator Superfamily
CLQ99_RS08340	COG0584	glycerophosphoryl diester phosphodiesterase
CLQ99_RS08350	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CLQ99_RS08380	COG0784	Response regulator, receiver
CLQ99_RS08380	COG2205	protein histidine kinase activity
CLQ99_RS08390	COG2198	Histidine kinase
CLQ99_RS08390	COG0642	Histidine kinase
CLQ99_RS08405	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CLQ99_RS08405	COG2169	Transcriptional regulator
CLQ99_RS08410	COG3145	DNA-N1-methyladenine dioxygenase activity
CLQ99_RS08415	COG4615	Cyclic peptide transporter
CLQ99_RS08420	COG2239	Acts as a magnesium transporter
CLQ99_RS08425	COG0659	secondary active sulfate transmembrane transporter activity
CLQ99_RS08440	COG0628	permease
CLQ99_RS08465	COG1349	DNA-binding transcription factor activity
CLQ99_RS08470	COG0494	nUDIX hydrolase
CLQ99_RS08490	COG1061	Type III restriction enzyme res subunit
CLQ99_RS08495	COG1187	pseudouridine synthase activity
CLQ99_RS08500	COG2814	Major facilitator Superfamily
CLQ99_RS08510	COG4172	Belongs to the ABC transporter superfamily
CLQ99_RS08515	COG4239	(ABC) transporter, permease
CLQ99_RS08520	COG4174	ABC transporter (Permease)
CLQ99_RS08525	COG4166	transmembrane transport
CLQ99_RS08530	COG2200	EAL domain
CLQ99_RS08535	COG0791	NLP P60 protein
CLQ99_RS08540	COG0671	phosphoesterase, PA-phosphatase related
CLQ99_RS08545	COG0523	cobalamin synthesis protein
CLQ99_RS08550	COG0246	Mannitol dehydrogenase
CLQ99_RS08555	COG1312	Catalyzes the dehydration of D-mannonate
CLQ99_RS08585	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS08585	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS08590	COG1105	Belongs to the carbohydrate kinase PfkB family
CLQ99_RS08595	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLQ99_RS08595	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLQ99_RS08595	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CLQ99_RS08605	COG2855	membrane
CLQ99_RS08615	COG0583	DNA-binding transcription factor activity
CLQ99_RS08620	COG0833	amino acid
CLQ99_RS08640	COG4771	TonB-dependent receptor
CLQ99_RS08655	COG2311	Membrane
CLQ99_RS08670	COG1129	ABC transporter
CLQ99_RS08680	COG2949	membrane
CLQ99_RS08690	COG1346	cytolysis
CLQ99_RS08700	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLQ99_RS08705	COG3659	wide pore channel activity
CLQ99_RS08720	COG2723	6-phospho-beta-galactosidase activity
CLQ99_RS08725	COG1538	Outer membrane efflux protein
CLQ99_RS08730	COG0586	Pfam SNARE associated Golgi protein
CLQ99_RS08740	COG1686	Belongs to the peptidase S11 family
CLQ99_RS08755	COG0277	FAD linked oxidase domain protein
CLQ99_RS08760	COG1472	Belongs to the glycosyl hydrolase 3 family
CLQ99_RS08765	COG1732	Glycine betaine
CLQ99_RS08770	COG1174	glycine betaine transport
CLQ99_RS08775	COG1125	glycine betaine transport
CLQ99_RS08780	COG1174	glycine betaine transport
CLQ99_RS08790	COG3275	phosphorelay sensor kinase activity
CLQ99_RS08800	COG4807	Protein conserved in bacteria
CLQ99_RS08820	COG5455	response to cobalt ion
CLQ99_RS08825	COG0583	DNA-binding transcription factor activity
CLQ99_RS08830	COG2252	PERMEase
CLQ99_RS08840	COG0583	DNA-binding transcription factor activity
CLQ99_RS08860	COG0351	phosphomethylpyrimidine kinase
CLQ99_RS08865	COG1830	Aldolase
CLQ99_RS08875	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CLQ99_RS08900	COG1070	Carbohydrate kinase
CLQ99_RS08910	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLQ99_RS08915	COG4948	Mandelate Racemase Muconate Lactonizing
CLQ99_RS08920	COG0747	negative chemotaxis
CLQ99_RS08925	COG0601	transmembrane transport
CLQ99_RS08930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLQ99_RS08935	COG0444	Belongs to the ABC transporter superfamily
CLQ99_RS08940	COG4608	Belongs to the ABC transporter superfamily
CLQ99_RS08950	COG0826	peptidase U32
CLQ99_RS08955	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS08960	COG2205	protein histidine kinase activity
CLQ99_RS08985	COG1301	dicarboxylic acid transport
CLQ99_RS09000	COG5002	protein histidine kinase activity
CLQ99_RS09005	COG0443	Heat shock 70 kDa protein
CLQ99_RS09010	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CLQ99_RS09025	COG2982	Protein involved in outer membrane biogenesis
CLQ99_RS09030	COG1253	flavin adenine dinucleotide binding
CLQ99_RS09085	COG1215	transferase activity, transferring glycosyl groups
CLQ99_RS09095	COG0438	transferase activity, transferring glycosyl groups
CLQ99_RS09130	COG1088	dTDP-glucose 4,6-dehydratase activity
CLQ99_RS09205	COG0438	transferase activity, transferring glycosyl groups
CLQ99_RS09210	COG1215	transferase activity, transferring glycosyl groups
CLQ99_RS09230	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CLQ99_RS09260	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLQ99_RS09265	COG0583	DNA-binding transcription factor activity
CLQ99_RS09275	COG0531	amino acid
CLQ99_RS09280	COG0640	Transcriptional regulator
CLQ99_RS09285	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CLQ99_RS09295	COG2925	Exonuclease
CLQ99_RS09310	COG3344	reverse transcriptase
CLQ99_RS09320	COG1289	transmembrane transporter activity
CLQ99_RS09340	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CLQ99_RS09350	COG1942	4-Oxalocrotonate Tautomerase
CLQ99_RS09355	COG0583	DNA-binding transcription factor activity
CLQ99_RS09360	COG0095	Lipoate-protein ligase
CLQ99_RS09365	COG0477	Major facilitator Superfamily
CLQ99_RS09380	COG5001	Diguanylate cyclase
CLQ99_RS09380	COG3300	MHYT domain
CLQ99_RS09385	COG3615	Tellurite resistance protein tehB
CLQ99_RS09410	COG3706	GGDEF domain
CLQ99_RS09470	COG2003	Belongs to the UPF0758 family
CLQ99_RS09525	COG3504	Conjugal transfer protein
CLQ99_RS09595	COG4771	TonB-dependent receptor
CLQ99_RS09600	COG1021	2,3-dihydroxybenzoate-AMP ligase
CLQ99_RS09620	COG3433	isochorismatase activity
CLQ99_RS09620	COG2226	methyltransferase
CLQ99_RS09620	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLQ99_RS09635	COG1132	(ABC) transporter
CLQ99_RS09640	COG2814	Major facilitator Superfamily
CLQ99_RS09645	COG1169	isochorismate synthase
CLQ99_RS09650	COG0582	viral genome integration into host DNA
CLQ99_RS09660	COG0534	Mate efflux family protein
CLQ99_RS09670	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CLQ99_RS09690	COG0604	alcohol dehydrogenase
CLQ99_RS09695	COG1309	transcriptional regulator
CLQ99_RS09700	COG0025	NhaP-type Na H and K H
CLQ99_RS09745	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CLQ99_RS09760	COG1418	mRNA catabolic process
CLQ99_RS09765	COG0270	DNA (cytosine-5-)-methyltransferase activity
CLQ99_RS09770	COG3727	T/G mismatch-specific endonuclease activity
CLQ99_RS09775	COG0697	spore germination
CLQ99_RS09780	COG2354	Protein conserved in bacteria
CLQ99_RS09810	COG0366	Alpha amylase catalytic
CLQ99_RS09815	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS09825	COG0765	amino acid transport
CLQ99_RS09830	COG1126	abc transporter atp-binding protein
CLQ99_RS09835	COG2197	response regulator
CLQ99_RS09845	COG2197	response regulator
CLQ99_RS09885	COG3012	SEC-C Motif Domain Protein
CLQ99_RS09885	COG3318	Belongs to the UPF0149 family
CLQ99_RS09890	COG0814	amino acid
CLQ99_RS09900	COG1528	Iron-storage protein
CLQ99_RS09915	COG0477	Major facilitator Superfamily
CLQ99_RS09925	COG2211	Major facilitator Superfamily
CLQ99_RS09935	COG1528	Iron-storage protein
CLQ99_RS09945	COG1879	ABC-type sugar transport system periplasmic component
CLQ99_RS09955	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS09980	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
CLQ99_RS09990	COG3102	Protein conserved in bacteria
CLQ99_RS10010	COG3788	relative of glutathione S-transferase, MAPEG superfamily
CLQ99_RS10015	COG1801	Protein of unknown function DUF72
CLQ99_RS10020	COG1335	isochorismatase
CLQ99_RS10030	COG0494	nUDIX hydrolase
CLQ99_RS10055	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CLQ99_RS10065	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CLQ99_RS10070	COG0739	heme binding
CLQ99_RS10075	COG1560	Kdo2-lipid A biosynthetic process
CLQ99_RS10085	COG1737	Transcriptional regulator
CLQ99_RS10100	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CLQ99_RS10105	COG0129	dihydroxy-acid dehydratase activity
CLQ99_RS10110	COG0800	Aldolase
CLQ99_RS10120	COG3141	response to X-ray
CLQ99_RS10125	COG2979	Protein of unknown function (DUF533)
CLQ99_RS10130	COG1770	oligopeptidase
CLQ99_RS10135	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CLQ99_RS10145	COG2372	response to copper ion
CLQ99_RS10150	COG1276	copper resistance
CLQ99_RS10165	COG2990	Protein conserved in bacteria
CLQ99_RS10190	COG3008	intermembrane lipid transfer
CLQ99_RS10195	COG2995	paraquat-inducible protein a
CLQ99_RS10200	COG1956	GAF domain-containing protein
CLQ99_RS10220	COG2814	Major facilitator Superfamily
CLQ99_RS10270	COG0768	penicillin binding
CLQ99_RS10275	COG2226	methyltransferase
CLQ99_RS10290	COG3716	PTS system mannose fructose sorbose family IID component
CLQ99_RS10295	COG3715	PTS system
CLQ99_RS10300	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLQ99_RS10300	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS10305	COG1253	flavin adenine dinucleotide binding
CLQ99_RS10310	COG2200	EAL domain
CLQ99_RS10315	COG1760	l-serine dehydratase
CLQ99_RS10335	COG0251	oxidation-reduction process
CLQ99_RS10340	COG1199	ATP-dependent helicase activity
CLQ99_RS10350	COG3065	identical protein binding
CLQ99_RS10360	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CLQ99_RS10370	COG2894	cell division
CLQ99_RS10385	COG0179	Fumarylacetoacetate (FAA) hydrolase
CLQ99_RS10415	COG2719	SpoVR family
CLQ99_RS10435	COG1619	proteins homologs of microcin C7 resistance protein MccF
CLQ99_RS10445	COG4774	siderophore transport
CLQ99_RS10460	COG2308	Evidence 4 Homologs of previously reported genes of
CLQ99_RS10500	COG0583	DNA-binding transcription factor activity
CLQ99_RS10505	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CLQ99_RS10520	COG1882	Formate acetyltransferase
CLQ99_RS10550	COG0583	DNA-binding transcription factor activity
CLQ99_RS10580	COG0583	DNA-binding transcription factor activity
CLQ99_RS10595	COG3122	Protein conserved in bacteria
CLQ99_RS10625	COG2885	chlorophyll binding
CLQ99_RS10780	COG0012	GTP binding
CLQ99_RS10800	COG0659	secondary active sulfate transmembrane transporter activity
CLQ99_RS10830	COG2890	protein-(glutamine-N5) methyltransferase activity
CLQ99_RS10850	COG0387	Pfam Sodium calcium exchanger
CLQ99_RS10855	COG4572	Cation transport regulator
CLQ99_RS10860	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
CLQ99_RS10870	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CLQ99_RS10875	COG3707	response regulator
CLQ99_RS10880	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLQ99_RS10890	COG1116	anion transmembrane transporter activity
CLQ99_RS10895	COG2146	nitrite reductase [NAD(P)H] activity
CLQ99_RS10895	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CLQ99_RS10900	COG0243	molybdopterin cofactor binding
CLQ99_RS10905	COG4932	domain protein
CLQ99_RS10910	COG2197	response regulator
CLQ99_RS10915	COG3850	Histidine kinase
CLQ99_RS10920	COG2223	nitrite transmembrane transporter activity
CLQ99_RS10925	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CLQ99_RS10930	COG1140	nitrate reductase beta subunit
CLQ99_RS10935	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CLQ99_RS10940	COG2181	nitrate reductase activity
CLQ99_RS10950	COG1522	sequence-specific DNA binding
CLQ99_RS10980	COG0788	formyltetrahydrofolate deformylase activity
CLQ99_RS10990	COG1752	Esterase of the alpha-beta hydrolase superfamily
CLQ99_RS10995	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS11000	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CLQ99_RS11005	COG2916	Histone family protein nucleoid-structuring protein H-NS
CLQ99_RS11010	COG1435	thymidine kinase activity
CLQ99_RS11015	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS11015	COG1454	alcohol dehydrogenase
CLQ99_RS11025	COG2095	MarC family integral membrane protein
CLQ99_RS11030	COG4166	transmembrane transport
CLQ99_RS11035	COG0601	transmembrane transport
CLQ99_RS11040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLQ99_RS11045	COG0444	Belongs to the ABC transporter superfamily
CLQ99_RS11055	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLQ99_RS11075	COG2353	YceI-like domain
CLQ99_RS11080	COG2350	Protein conserved in bacteria
CLQ99_RS11090	COG3001	Fructosamine kinase
CLQ99_RS11100	COG1105	Belongs to the carbohydrate kinase PfkB family
CLQ99_RS11105	COG3137	Salt-induced outer membrane protein
CLQ99_RS11150	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CLQ99_RS11150	COG0072	phenylalanine-tRNA ligase activity
CLQ99_RS11170	COG0583	DNA-binding transcription factor activity
CLQ99_RS11190	COG0386	Belongs to the glutathione peroxidase family
CLQ99_RS11200	COG0791	NLP P60 protein
CLQ99_RS11210	COG4256	Hemin uptake protein
CLQ99_RS11215	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CLQ99_RS11225	COG0574	Belongs to the PEP-utilizing enzyme family
CLQ99_RS11225	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CLQ99_RS11235	COG0628	permease
CLQ99_RS11240	COG0277	FAD linked oxidase domain protein
CLQ99_RS11240	COG0247	lactate metabolic process
CLQ99_RS11245	COG2050	protein possibly involved in aromatic compounds catabolism
CLQ99_RS11250	COG2261	transglycosylase associated protein
CLQ99_RS11280	COG1120	ATPase activity
CLQ99_RS11285	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS11295	COG0583	DNA-binding transcription factor activity
CLQ99_RS11320	COG1304	FMN binding
CLQ99_RS11325	COG1309	transcriptional regulator
CLQ99_RS11340	COG0316	Belongs to the HesB IscA family
CLQ99_RS11345	COG0719	Fe-S assembly protein
CLQ99_RS11350	COG0396	ATPase activity
CLQ99_RS11355	COG0719	Fe-S assembly protein
CLQ99_RS11370	COG1376	ErfK ybiS ycfS ynhG family protein
CLQ99_RS11395	COG1309	transcriptional regulator
CLQ99_RS11400	COG1082	Xylose isomerase domain protein TIM barrel
CLQ99_RS11400	COG3185	4-Hydroxyphenylpyruvate dioxygenase
CLQ99_RS11405	COG2271	Major facilitator Superfamily
CLQ99_RS11410	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CLQ99_RS11420	COG1120	ATPase activity
CLQ99_RS11425	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS11430	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLQ99_RS11435	COG1414	Transcriptional regulator
CLQ99_RS11470	COG2814	Major facilitator Superfamily
CLQ99_RS11490	COG0583	DNA-binding transcription factor activity
CLQ99_RS11495	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLQ99_RS11515	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLQ99_RS11520	COG1116	anion transmembrane transporter activity
CLQ99_RS11525	COG4774	siderophore transport
CLQ99_RS11530	COG1120	ATPase activity
CLQ99_RS11535	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS11540	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS11560	COG0765	amino acid transport
CLQ99_RS11565	COG1126	abc transporter atp-binding protein
CLQ99_RS11595	COG1473	amidohydrolase
CLQ99_RS11600	COG3383	formate dehydrogenase (NAD+) activity
CLQ99_RS11605	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CLQ99_RS11620	COG1175	transmembrane transport
CLQ99_RS11650	COG4133	protoheme IX ABC transporter activity
CLQ99_RS11655	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CLQ99_RS11660	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CLQ99_RS11675	COG1138	Cytochrome C-type biogenesis protein
CLQ99_RS11680	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CLQ99_RS11685	COG3088	subunit of a heme lyase
CLQ99_RS11685	COG4235	cytochrome complex assembly
CLQ99_RS11725	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CLQ99_RS11770	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CLQ99_RS11805	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS11810	COG2610	gluconate transmembrane transporter activity
CLQ99_RS11815	COG1250	3-hydroxyacyl-CoA dehydrogenase
CLQ99_RS11825	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CLQ99_RS11835	COG0583	DNA-binding transcription factor activity
CLQ99_RS11860	COG0277	FAD linked oxidase domain protein
CLQ99_RS11865	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLQ99_RS11890	COG0402	S-adenosylhomocysteine deaminase activity
CLQ99_RS11940	COG3321	synthase
CLQ99_RS11940	COG0604	alcohol dehydrogenase
CLQ99_RS11940	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS11970	COG4608	Belongs to the ABC transporter superfamily
CLQ99_RS11975	COG0444	Belongs to the ABC transporter superfamily
CLQ99_RS12000	COG0346	lactoylglutathione lyase activity
CLQ99_RS12005	COG1349	DNA-binding transcription factor activity
CLQ99_RS12035	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CLQ99_RS12090	COG0307	riboflavin synthase, alpha
CLQ99_RS12095	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CLQ99_RS12100	COG2814	Major facilitator Superfamily
CLQ99_RS12105	COG0583	DNA-binding transcription factor activity
CLQ99_RS12120	COG2814	Major facilitator Superfamily
CLQ99_RS12135	COG0791	NLP P60 protein
CLQ99_RS12140	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CLQ99_RS12150	COG0346	lactoylglutathione lyase activity
CLQ99_RS12155	COG1902	pentaerythritol trinitrate reductase activity
CLQ99_RS12160	COG1309	transcriptional regulator
CLQ99_RS12165	COG3313	Fe-S protein
CLQ99_RS12170	COG4989	oxidoreductase activity
CLQ99_RS12175	COG2032	superoxide dismutase activity
CLQ99_RS12180	COG1289	transmembrane transporter activity
CLQ99_RS12185	COG1566	PFAM secretion protein HlyD family protein
CLQ99_RS12200	COG3706	GGDEF domain
CLQ99_RS12215	COG3895	Periplasmic Protein
CLQ99_RS12230	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
CLQ99_RS12235	COG0625	glutathione transferase activity
CLQ99_RS12250	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CLQ99_RS12260	COG4659	FMN binding
CLQ99_RS12295	COG2723	6-phospho-beta-galactosidase activity
CLQ99_RS12305	COG0673	inositol 2-dehydrogenase activity
CLQ99_RS12315	COG2814	Major facilitator Superfamily
CLQ99_RS12335	COG3038	cytochrome b561
CLQ99_RS12355	COG0583	DNA-binding transcription factor activity
CLQ99_RS12360	COG3485	protocatechuate 3,4-dioxygenase
CLQ99_RS12365	COG3485	protocatechuate 3,4-dioxygenase
CLQ99_RS12370	COG5383	Protein conserved in bacteria
CLQ99_RS12375	COG2272	Belongs to the type-B carboxylesterase lipase family
CLQ99_RS12390	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLQ99_RS12395	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CLQ99_RS12400	COG1275	C4-dicarboxylate transporter malic acid transport protein
CLQ99_RS12405	COG0500	methyltransferase
CLQ99_RS12420	COG3708	Transcriptional regulator
CLQ99_RS12420	COG2207	Transcriptional regulator
CLQ99_RS12425	COG3135	benzoate transporter
CLQ99_RS12430	COG1396	sequence-specific DNA binding
CLQ99_RS12440	COG0826	peptidase U32
CLQ99_RS12460	COG1294	oxidase, subunit
CLQ99_RS12465	COG1271	oxidase subunit
CLQ99_RS12470	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLQ99_RS12475	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CLQ99_RS12480	COG3842	ATPase activity
CLQ99_RS12485	COG1176	ABC-type spermidine putrescine transport system, permease component I
CLQ99_RS12490	COG1177	transmembrane transport
CLQ99_RS12495	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS12525	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS12530	COG0747	negative chemotaxis
CLQ99_RS12540	COG3238	Protein conserved in bacteria
CLQ99_RS12545	COG1247	-acetyltransferase
CLQ99_RS12555	COG2130	NADP-dependent
CLQ99_RS12570	COG3691	Protein conserved in bacteria
CLQ99_RS12575	COG1228	amidohydrolase
CLQ99_RS12580	COG4772	TonB-dependent receptor
CLQ99_RS12605	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CLQ99_RS12610	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLQ99_RS12615	COG1473	amidohydrolase
CLQ99_RS12620	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLQ99_RS12625	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS12635	COG0765	amino acid transport
CLQ99_RS12640	COG1126	abc transporter atp-binding protein
CLQ99_RS12650	COG0625	glutathione transferase activity
CLQ99_RS12680	COG2211	Major facilitator Superfamily
CLQ99_RS12695	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CLQ99_RS12700	COG3842	ATPase activity
CLQ99_RS12705	COG1840	ABC-type Fe3 transport system, periplasmic component
CLQ99_RS12710	COG1178	ABC-type Fe3 transport system permease component
CLQ99_RS12715	COG2162	N-hydroxyarylamine O-acetyltransferase activity
CLQ99_RS12720	COG2181	nitrate reductase activity
CLQ99_RS12725	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CLQ99_RS12730	COG1140	nitrate reductase beta subunit
CLQ99_RS12735	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CLQ99_RS12755	COG1414	Transcriptional regulator
CLQ99_RS12760	COG4948	Mandelate Racemase Muconate Lactonizing
CLQ99_RS12765	COG4829	muconolactone delta-isomerase
CLQ99_RS12770	COG3485	protocatechuate 3,4-dioxygenase
CLQ99_RS12790	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
CLQ99_RS12810	COG3383	formate dehydrogenase (NAD+) activity
CLQ99_RS12810	COG0243	molybdopterin cofactor binding
CLQ99_RS12815	COG0243	molybdopterin cofactor binding
CLQ99_RS12815	COG3383	formate dehydrogenase (NAD+) activity
CLQ99_RS12820	COG0437	4 iron, 4 sulfur cluster binding
CLQ99_RS12825	COG2864	formate dehydrogenase
CLQ99_RS12840	COG2326	polyphosphate kinase activity
CLQ99_RS12850	COG2814	Major facilitator Superfamily
CLQ99_RS12860	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLQ99_RS12870	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLQ99_RS12880	COG0747	negative chemotaxis
CLQ99_RS12885	COG1064	alcohol dehydrogenase
CLQ99_RS12900	COG0488	(ABC) transporter
CLQ99_RS12940	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS12945	COG3729	General stress protein
CLQ99_RS12960	COG3685	Protein conserved in bacteria
CLQ99_RS12970	COG0366	Alpha amylase catalytic
CLQ99_RS12980	COG2323	membrane
CLQ99_RS12990	COG3111	PFAM Bacterial OB fold (BOF) protein
CLQ99_RS12995	COG1764	response to oxidative stress
CLQ99_RS13020	COG3781	membrane
CLQ99_RS13025	COG0243	molybdopterin cofactor binding
CLQ99_RS13050	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS13075	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS13080	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLQ99_RS13085	COG2814	Major facilitator Superfamily
CLQ99_RS13095	COG1285	pathogenesis
CLQ99_RS13100	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CLQ99_RS13110	COG0583	DNA-binding transcription factor activity
CLQ99_RS13130	COG0519	Catalyzes the synthesis of GMP from XMP
CLQ99_RS13130	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CLQ99_RS13170	COG0596	Alpha beta hydrolase
CLQ99_RS13180	COG2205	protein histidine kinase activity
CLQ99_RS13195	COG0076	glutamate decarboxylase activity
CLQ99_RS13200	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CLQ99_RS13205	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLQ99_RS13210	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLQ99_RS13215	COG1116	anion transmembrane transporter activity
CLQ99_RS13220	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CLQ99_RS13230	COG0673	inositol 2-dehydrogenase activity
CLQ99_RS13240	COG1609	Transcriptional regulator
CLQ99_RS13245	COG3706	GGDEF domain
CLQ99_RS13250	COG0402	S-adenosylhomocysteine deaminase activity
CLQ99_RS13255	COG1953	Uracil, thiamine, allantoin
CLQ99_RS13290	COG0406	alpha-ribazole phosphatase activity
CLQ99_RS13300	COG1335	isochorismatase
CLQ99_RS13340	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CLQ99_RS13405	COG0765	amino acid transport
CLQ99_RS13415	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CLQ99_RS13425	COG2070	2-Nitropropane dioxygenase
CLQ99_RS13430	COG0583	DNA-binding transcription factor activity
CLQ99_RS13440	COG1902	pentaerythritol trinitrate reductase activity
CLQ99_RS13445	COG4529	Protein conserved in bacteria
CLQ99_RS13450	COG0477	Major facilitator Superfamily
CLQ99_RS13480	COG2223	nitrite transmembrane transporter activity
CLQ99_RS13490	COG1609	Transcriptional regulator
CLQ99_RS13495	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS13505	COG3039	Transposase
CLQ99_RS13515	COG3037	sugar-specific permease SgaT UlaA
CLQ99_RS13520	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CLQ99_RS13530	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLQ99_RS13535	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLQ99_RS13535	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CLQ99_RS13535	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CLQ99_RS13550	COG0583	DNA-binding transcription factor activity
CLQ99_RS13555	COG0583	DNA-binding transcription factor activity
CLQ99_RS13560	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLQ99_RS13570	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CLQ99_RS13585	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS13595	COG1609	Transcriptional regulator
CLQ99_RS13625	COG1652	LysM domain
CLQ99_RS13640	COG0426	domain, Protein
CLQ99_RS13640	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CLQ99_RS13665	COG0456	acetyltransferase
CLQ99_RS13665	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CLQ99_RS13675	COG0667	Aldo Keto reductase
CLQ99_RS13680	COG0667	Aldo Keto reductase
CLQ99_RS13690	COG0667	Aldo Keto reductase
CLQ99_RS13705	COG4977	sequence-specific DNA binding
CLQ99_RS13725	COG4977	sequence-specific DNA binding
CLQ99_RS13730	COG1349	DNA-binding transcription factor activity
CLQ99_RS13745	COG1349	DNA-binding transcription factor activity
CLQ99_RS13750	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CLQ99_RS13755	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS13760	COG0738	Major facilitator superfamily
CLQ99_RS13805	COG1929	Belongs to the glycerate kinase type-1 family
CLQ99_RS13810	COG3835	regulator
CLQ99_RS13830	COG2186	Transcriptional regulator
CLQ99_RS13835	COG1263	PTS System
CLQ99_RS13835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLQ99_RS13845	COG2814	Major facilitator Superfamily
CLQ99_RS13850	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS13850	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS13860	COG2819	hydrolase of the alpha beta superfamily
CLQ99_RS13865	COG5001	Diguanylate cyclase
CLQ99_RS13865	COG3300	MHYT domain
CLQ99_RS13900	COG3188	usher protein
CLQ99_RS13910	COG1649	PFAM Uncharacterised BCR, COG1649
CLQ99_RS13915	COG3550	peptidyl-serine autophosphorylation
CLQ99_RS13920	COG1396	sequence-specific DNA binding
CLQ99_RS13925	COG2351	hydroxyisourate hydrolase activity
CLQ99_RS13930	COG3195	allantoin biosynthetic process
CLQ99_RS13930	COG3648	Uricase
CLQ99_RS13935	COG2233	PERMEase
CLQ99_RS13965	COG2207	Transcriptional regulator
CLQ99_RS13980	COG4628	conserved protein (DUF2132)
CLQ99_RS14000	COG2011	ABC-type metal ion transport system permease component
CLQ99_RS14005	COG2070	2-Nitropropane dioxygenase
CLQ99_RS14015	COG0477	Major facilitator Superfamily
CLQ99_RS14095	COG2199	diguanylate cyclase activity
CLQ99_RS14110	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS14115	COG0583	DNA-binding transcription factor activity
CLQ99_RS14125	COG0039	L-malate dehydrogenase activity
CLQ99_RS14130	COG1349	DNA-binding transcription factor activity
CLQ99_RS14135	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CLQ99_RS14140	COG3395	kinase activity
CLQ99_RS14150	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CLQ99_RS14165	COG2731	YhcH YjgK YiaL family protein
CLQ99_RS14170	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS14195	COG4977	sequence-specific DNA binding
CLQ99_RS14205	COG0697	spore germination
CLQ99_RS14210	COG2814	Major facilitator Superfamily
CLQ99_RS14220	COG0410	ABC transporter
CLQ99_RS14225	COG1129	ABC transporter
CLQ99_RS14240	COG0683	leucine binding
CLQ99_RS14245	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CLQ99_RS14280	COG2223	nitrite transmembrane transporter activity
CLQ99_RS14285	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CLQ99_RS14300	COG1349	DNA-binding transcription factor activity
CLQ99_RS14305	COG2084	Dehydrogenase
CLQ99_RS14310	COG3395	kinase activity
CLQ99_RS14315	COG0235	Class ii aldolase
CLQ99_RS14320	COG3622	Belongs to the hyi family
CLQ99_RS14325	COG2610	gluconate transmembrane transporter activity
CLQ99_RS14330	COG3708	Transcriptional regulator
CLQ99_RS14330	COG2207	Transcriptional regulator
CLQ99_RS14345	COG2200	EAL domain
CLQ99_RS14350	COG1546	Belongs to the CinA family
CLQ99_RS14355	COG0071	Belongs to the small heat shock protein (HSP20) family
CLQ99_RS14365	COG2197	response regulator
CLQ99_RS14370	COG2135	peptidase activity
CLQ99_RS14375	COG2207	Transcriptional regulator
CLQ99_RS14390	COG4221	oxidoreductase activity
CLQ99_RS14395	COG1802	Transcriptional regulator
CLQ99_RS14400	COG0589	response to stress
CLQ99_RS14415	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CLQ99_RS14420	COG1940	carbohydrate kinase activity
CLQ99_RS14425	COG0583	DNA-binding transcription factor activity
CLQ99_RS14430	COG2814	Major facilitator Superfamily
CLQ99_RS14435	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CLQ99_RS14445	COG3591	Belongs to the peptidase S1B family
CLQ99_RS14465	COG0628	permease
CLQ99_RS14495	COG0679	Auxin Efflux Carrier
CLQ99_RS14505	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CLQ99_RS14530	COG3290	protein histidine kinase activity
CLQ99_RS14535	COG4565	transcriptional regulatory protein
CLQ99_RS14560	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CLQ99_RS14560	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CLQ99_RS14580	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CLQ99_RS14585	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CLQ99_RS14595	COG0183	Belongs to the thiolase family
CLQ99_RS14600	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CLQ99_RS14610	COG1414	Transcriptional regulator
CLQ99_RS14615	COG2840	Smr protein MutS2
CLQ99_RS14620	COG0583	DNA-binding transcription factor activity
CLQ99_RS14630	COG1473	amidohydrolase
CLQ99_RS14635	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CLQ99_RS14650	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CLQ99_RS14665	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CLQ99_RS14670	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CLQ99_RS14690	COG0531	amino acid
CLQ99_RS14700	COG3136	membrane protein required for alginate biosynthesis
CLQ99_RS14705	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS14715	COG2205	protein histidine kinase activity
CLQ99_RS14725	COG0114	fumarate hydratase activity
CLQ99_RS14730	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CLQ99_RS14730	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CLQ99_RS14735	COG1482	cell wall glycoprotein biosynthetic process
CLQ99_RS14740	COG5339	Protein conserved in bacteria
CLQ99_RS14745	COG1609	Transcriptional regulator
CLQ99_RS14750	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLQ99_RS14750	COG1263	PTS System
CLQ99_RS14755	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CLQ99_RS14780	COG2391	methyltransferase activity
CLQ99_RS14785	COG0425	Belongs to the sulfur carrier protein TusA family
CLQ99_RS14790	COG5562	phage envelope protein
CLQ99_RS14795	COG0401	homolog of Blt101
CLQ99_RS14800	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CLQ99_RS14805	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS14810	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CLQ99_RS14815	COG0477	Major facilitator Superfamily
CLQ99_RS14820	COG1113	amino acid transport
CLQ99_RS14825	COG2988	succinylglutamate desuccinylase activity
CLQ99_RS14830	COG3724	N-succinylarginine dihydrolase activity
CLQ99_RS14835	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS14840	COG3138	arginine N-succinyltransferase
CLQ99_RS14845	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CLQ99_RS14850	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CLQ99_RS14855	COG0667	Aldo Keto reductase
CLQ99_RS14860	COG0583	DNA-binding transcription factor activity
CLQ99_RS14885	COG4122	O-methyltransferase activity
CLQ99_RS14890	COG1643	Atp-dependent helicase
CLQ99_RS14905	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CLQ99_RS14910	COG3327	negative regulation of DNA-templated transcription, initiation
CLQ99_RS14915	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
CLQ99_RS14920	COG0183	Belongs to the thiolase family
CLQ99_RS14925	COG2050	protein possibly involved in aromatic compounds catabolism
CLQ99_RS14930	COG1250	3-hydroxyacyl-CoA dehydrogenase
CLQ99_RS14935	COG1024	Enoyl-CoA hydratase
CLQ99_RS14940	COG1024	Enoyl-CoA hydratase
CLQ99_RS14945	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CLQ99_RS14950	COG2151	metal-sulfur cluster biosynthetic enzyme
CLQ99_RS14955	COG3396	Phenylacetate-CoA oxygenase
CLQ99_RS14960	COG3460	Phenylacetate-CoA oxygenase
CLQ99_RS14965	COG3396	Phenylacetate-CoA oxygenase
CLQ99_RS14970	COG2030	dehydratase
CLQ99_RS14970	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS15000	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS15005	COG2207	Transcriptional regulator
CLQ99_RS15010	COG3784	Protein of unknown function (DUF1318)
CLQ99_RS15020	COG2911	Protein conserved in bacteria
CLQ99_RS15025	COG0586	Pfam SNARE associated Golgi protein
CLQ99_RS15030	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CLQ99_RS15035	COG3187	Heat shock protein
CLQ99_RS15040	COG3042	response to heat
CLQ99_RS15050	COG1013	pyruvate-flavodoxin oxidoreductase activity
CLQ99_RS15050	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CLQ99_RS15050	COG0674	pyruvate-flavodoxin oxidoreductase activity
CLQ99_RS15050	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CLQ99_RS15055	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CLQ99_RS15065	COG0589	response to stress
CLQ99_RS15075	COG0513	Belongs to the DEAD box helicase family
CLQ99_RS15090	COG1349	DNA-binding transcription factor activity
CLQ99_RS15095	COG0673	inositol 2-dehydrogenase activity
CLQ99_RS15110	COG1113	amino acid transport
CLQ99_RS15115	COG1522	sequence-specific DNA binding
CLQ99_RS15125	COG1448	Aminotransferase
CLQ99_RS15130	COG2011	ABC-type metal ion transport system permease component
CLQ99_RS15145	COG0436	Aminotransferase
CLQ99_RS15150	COG0604	alcohol dehydrogenase
CLQ99_RS15175	COG0583	DNA-binding transcription factor activity
CLQ99_RS15195	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS15200	COG1309	transcriptional regulator
CLQ99_RS15205	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS15300	COG2885	chlorophyll binding
CLQ99_RS15425	COG1196	nuclear chromosome segregation
CLQ99_RS15425	COG0739	heme binding
CLQ99_RS15425	COG0741	lytic transglycosylase activity
CLQ99_RS15495	COG3567	Phage-associated protein, HI1409 family
CLQ99_RS15500	COG1783	phage Terminase large subunit
CLQ99_RS15525	COG3772	lysozyme
CLQ99_RS15535	COG0484	heat shock protein binding
CLQ99_RS15640	COG0582	viral genome integration into host DNA
CLQ99_RS15645	COG0693	protein deglycase activity
CLQ99_RS15650	COG1078	dGTPase activity
CLQ99_RS15655	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS15660	COG0583	DNA-binding transcription factor activity
CLQ99_RS15680	COG0656	L-ascorbic acid biosynthetic process
CLQ99_RS15710	COG4166	transmembrane transport
CLQ99_RS15715	COG2866	Carboxypeptidase
CLQ99_RS15720	COG4948	Mandelate Racemase Muconate Lactonizing
CLQ99_RS15725	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CLQ99_RS15730	COG3180	Ammonia monooxygenase
CLQ99_RS15740	COG1486	melibiose metabolic process
CLQ99_RS15745	COG0583	DNA-binding transcription factor activity
CLQ99_RS15755	COG3106	COG3106 Predicted ATPase
CLQ99_RS15765	COG1983	PspC domain protein
CLQ99_RS15775	COG1842	Phage shock protein A
CLQ99_RS15780	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CLQ99_RS15790	COG1473	amidohydrolase
CLQ99_RS15805	COG0702	epimerase
CLQ99_RS15820	COG2135	peptidase activity
CLQ99_RS15830	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CLQ99_RS15835	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CLQ99_RS15840	COG3344	reverse transcriptase
CLQ99_RS15920	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CLQ99_RS16040	COG4171	peptide transport system, permease
CLQ99_RS16055	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CLQ99_RS16065	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CLQ99_RS16070	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CLQ99_RS16070	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CLQ99_RS16085	COG1349	DNA-binding transcription factor activity
CLQ99_RS16095	COG0023	Translation Initiation Factor
CLQ99_RS16105	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CLQ99_RS16110	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
CLQ99_RS16115	COG0671	phosphoesterase, PA-phosphatase related
CLQ99_RS16125	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CLQ99_RS16155	COG0616	signal peptide processing
CLQ99_RS16165	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS16170	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
CLQ99_RS16180	COG0583	DNA-binding transcription factor activity
CLQ99_RS16190	COG0009	L-threonylcarbamoyladenylate synthase
CLQ99_RS16200	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CLQ99_RS16205	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CLQ99_RS16205	COG0512	Glutamine amidotransferase of anthranilate synthase
CLQ99_RS16210	COG0134	indole-3-glycerol-phosphate synthase activity
CLQ99_RS16210	COG0135	phosphoribosylanthranilate isomerase activity
CLQ99_RS16265	COG4774	siderophore transport
CLQ99_RS16275	COG3047	cAMP biosynthetic process
CLQ99_RS16280	COG0727	PFAM Uncharacterised protein family (UPF0153)
CLQ99_RS16310	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLQ99_RS16315	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS16320	COG1988	membrane-bound metal-dependent
CLQ99_RS16325	COG1823	symporter activity
CLQ99_RS16335	COG0753	catalase activity
CLQ99_RS16345	COG1486	melibiose metabolic process
CLQ99_RS16350	COG2169	Transcriptional regulator
CLQ99_RS16350	COG1917	Cupin 2, conserved barrel domain protein
CLQ99_RS16355	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLQ99_RS16360	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS16365	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS16370	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CLQ99_RS16380	COG0322	excinuclease ABC activity
CLQ99_RS16385	COG3678	ATP-independent chaperone mediated protein folding
CLQ99_RS16395	COG3724	N-succinylarginine dihydrolase activity
CLQ99_RS16405	COG3138	arginine N-succinyltransferase
CLQ99_RS16415	COG0708	Exodeoxyribonuclease III
CLQ99_RS16420	COG0398	Pfam SNARE associated Golgi protein
CLQ99_RS16425	COG0398	Pfam SNARE associated Golgi protein
CLQ99_RS16430	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CLQ99_RS16435	COG4134	Bacterial extracellular solute-binding protein
CLQ99_RS16440	COG4135	transport system, permease component
CLQ99_RS16445	COG4136	ATPase activity
CLQ99_RS16450	COG2897	thiosulfate sulfurtransferase activity
CLQ99_RS16455	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CLQ99_RS16460	COG0494	nUDIX hydrolase
CLQ99_RS16465	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CLQ99_RS16470	COG3321	synthase
CLQ99_RS16470	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS16470	COG0604	alcohol dehydrogenase
CLQ99_RS16475	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CLQ99_RS16480	COG0709	Synthesizes selenophosphate from selenide and ATP
CLQ99_RS16500	COG0778	Nitroreductase
CLQ99_RS16505	COG0616	signal peptide processing
CLQ99_RS16510	COG0252	asparaginase activity
CLQ99_RS16515	COG1335	isochorismatase
CLQ99_RS16520	COG2814	Major facilitator Superfamily
CLQ99_RS16525	COG1349	DNA-binding transcription factor activity
CLQ99_RS16530	COG0667	Aldo Keto reductase
CLQ99_RS16535	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS16540	COG0191	fructose-bisphosphate aldolase activity
CLQ99_RS16545	COG1063	alcohol dehydrogenase
CLQ99_RS16550	COG2271	Major facilitator Superfamily
CLQ99_RS16555	COG1063	alcohol dehydrogenase
CLQ99_RS16570	COG3139	Protein of unknown function (DUF1315)
CLQ99_RS16595	COG3713	MltA-interacting MipA family protein
CLQ99_RS16600	COG2766	serine protein kinase
CLQ99_RS16615	COG0386	Belongs to the glutathione peroxidase family
CLQ99_RS16635	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS16640	COG0583	DNA-binding transcription factor activity
CLQ99_RS16645	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CLQ99_RS16650	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CLQ99_RS16655	COG3344	reverse transcriptase
CLQ99_RS16670	COG0859	PFAM glycosyl transferase family 9
CLQ99_RS16675	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLQ99_RS16685	COG2207	Transcriptional regulator
CLQ99_RS16690	COG2807	transmembrane transport
CLQ99_RS16695	COG0504	CTP synthase activity
CLQ99_RS16700	COG1683	Conserved Protein
CLQ99_RS16705	COG3189	MarR family transcriptional regulator
CLQ99_RS16710	COG3042	response to heat
CLQ99_RS16715	COG2203	Gaf domain
CLQ99_RS16715	COG2199	diguanylate cyclase activity
CLQ99_RS16735	COG3182	Iron-regulated membrane protein
CLQ99_RS16745	COG1560	Kdo2-lipid A biosynthetic process
CLQ99_RS16760	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CLQ99_RS16765	COG3706	GGDEF domain
CLQ99_RS16770	COG0583	DNA-binding transcription factor activity
CLQ99_RS16775	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CLQ99_RS16800	COG1294	oxidase, subunit
CLQ99_RS16805	COG1271	oxidase subunit
CLQ99_RS16810	COG3546	catalase activity
CLQ99_RS16815	COG3685	Protein conserved in bacteria
CLQ99_RS16820	COG3685	Protein conserved in bacteria
CLQ99_RS16825	COG3729	General stress protein
CLQ99_RS16830	COG1063	alcohol dehydrogenase
CLQ99_RS16835	COG3813	Protein conserved in bacteria
CLQ99_RS16850	COG0640	Transcriptional regulator
CLQ99_RS16855	COG0538	isocitrate dehydrogenase activity
CLQ99_RS16945	COG0616	signal peptide processing
CLQ99_RS16960	COG4626	Terminase
CLQ99_RS16960	COG1802	Transcriptional regulator
CLQ99_RS17000	COG3772	lysozyme
CLQ99_RS17020	COG1403	HNH endonuclease
CLQ99_RS17045	COG3344	reverse transcriptase
CLQ99_RS17055	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CLQ99_RS17100	COG1396	sequence-specific DNA binding
CLQ99_RS17125	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CLQ99_RS17135	COG0582	viral genome integration into host DNA
CLQ99_RS17140	COG0538	isocitrate dehydrogenase activity
CLQ99_RS17145	COG1187	pseudouridine synthase activity
CLQ99_RS17165	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CLQ99_RS17185	COG2205	protein histidine kinase activity
CLQ99_RS17190	COG2850	peptidyl-arginine hydroxylation
CLQ99_RS17210	COG1177	transmembrane transport
CLQ99_RS17225	COG0318	PFAM AMP-dependent synthetase and ligase
CLQ99_RS17235	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CLQ99_RS17245	COG4591	ABC-type transport system involved in lipoprotein release permease component
CLQ99_RS17255	COG4591	ABC-type transport system involved in lipoprotein release permease component
CLQ99_RS17260	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CLQ99_RS17265	COG1388	LysM domain
CLQ99_RS17265	COG1376	ErfK ybiS ycfS ynhG family protein
CLQ99_RS17275	COG1309	transcriptional regulator
CLQ99_RS17285	COG3134	Outer membrane lipoprotein
CLQ99_RS17290	COG1252	NADH dehydrogenase
CLQ99_RS17315	COG5633	Lipoprotein
CLQ99_RS17320	COG0537	adenosine 5'-monophosphoramidase activity
CLQ99_RS17330	COG0084	hydrolase, TatD family'
CLQ99_RS17335	COG0470	DNA polymerase III
CLQ99_RS17345	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CLQ99_RS17350	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CLQ99_RS17355	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CLQ99_RS17370	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CLQ99_RS17390	COG1399	metal-binding, possibly nucleic acid-binding protein
CLQ99_RS17410	COG1530	ribonuclease E activity
CLQ99_RS17415	COG0583	DNA-binding transcription factor activity
CLQ99_RS17420	COG2814	Major facilitator Superfamily
CLQ99_RS17440	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CLQ99_RS17490	COG1560	Kdo2-lipid A biosynthetic process
CLQ99_RS17510	COG5645	(Lipo)protein
CLQ99_RS17550	COG3381	protein complex oligomerization
CLQ99_RS17575	COG0583	DNA-binding transcription factor activity
CLQ99_RS17585	COG1335	isochorismatase
CLQ99_RS17595	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CLQ99_RS17600	COG1702	phosphate starvation-inducible protein PhoH
CLQ99_RS17620	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CLQ99_RS17630	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CLQ99_RS17645	COG1309	transcriptional regulator
CLQ99_RS17680	COG2233	PERMEase
CLQ99_RS17695	COG3729	General stress protein
CLQ99_RS17855	COG4695	Portal protein
CLQ99_RS17920	COG4974	Belongs to the 'phage' integrase family
CLQ99_RS17935	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS17950	COG0531	amino acid
CLQ99_RS17960	COG0174	glutamine synthetase
CLQ99_RS17965	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CLQ99_RS17970	COG1396	sequence-specific DNA binding
CLQ99_RS17970	COG1917	Cupin 2, conserved barrel domain protein
CLQ99_RS17975	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS17980	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CLQ99_RS17985	COG0583	DNA-binding transcription factor activity
CLQ99_RS17990	COG0473	3-isopropylmalate dehydrogenase activity
CLQ99_RS18000	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CLQ99_RS18005	COG4638	Rieske (2fe-2S)
CLQ99_RS18010	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS18015	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CLQ99_RS18025	COG2200	EAL domain
CLQ99_RS18030	COG2200	EAL domain
CLQ99_RS18045	COG0670	Belongs to the BI1 family
CLQ99_RS18060	COG2207	Transcriptional regulator
CLQ99_RS18065	COG1881	PFAM PEBP family protein
CLQ99_RS18080	COG1832	CoA-binding protein
CLQ99_RS18090	COG0210	DNA helicase
CLQ99_RS18095	COG3304	Inner membrane component domain
CLQ99_RS18100	COG1289	transmembrane transporter activity
CLQ99_RS18105	COG3070	regulator of competence-specific genes
CLQ99_RS18130	COG1067	ATP-dependent peptidase activity
CLQ99_RS18140	COG3130	regulation of translation
CLQ99_RS18145	COG3009	Protein conserved in bacteria
CLQ99_RS18150	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CLQ99_RS18150	COG3008	intermembrane lipid transfer
CLQ99_RS18155	COG2995	paraquat-inducible protein a
CLQ99_RS18160	COG0488	(ABC) transporter
CLQ99_RS18170	COG0633	Ferredoxin
CLQ99_RS18170	COG3217	Mosc domain protein beta barrel domain protein
CLQ99_RS18185	COG0431	NADPH-dependent FMN reductase
CLQ99_RS18190	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CLQ99_RS18195	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CLQ99_RS18200	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLQ99_RS18210	COG0308	aminopeptidase N
CLQ99_RS18220	COG1473	amidohydrolase
CLQ99_RS18230	COG0814	amino acid
CLQ99_RS18240	COG1522	sequence-specific DNA binding
CLQ99_RS18255	COG1448	Aminotransferase
CLQ99_RS18260	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CLQ99_RS18265	COG3108	Peptidase M15
CLQ99_RS18270	COG2989	Protein conserved in bacteria
CLQ99_RS18280	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
CLQ99_RS18290	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CLQ99_RS18295	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CLQ99_RS18300	COG3173	Aminoglycoside phosphotransferase
CLQ99_RS18315	COG3214	Protein conserved in bacteria
CLQ99_RS18330	COG2333	competence protein COMEC
CLQ99_RS18330	COG0658	competence protein
CLQ99_RS18340	COG0539	negative regulation of cytoplasmic translation
CLQ99_RS18360	COG2323	membrane
CLQ99_RS18365	COG1944	ATP diphosphatase activity
CLQ99_RS18370	COG2116	formate transmembrane transporter activity
CLQ99_RS18375	COG1882	Formate acetyltransferase
CLQ99_RS18380	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLQ99_RS18385	COG0477	Major facilitator Superfamily
CLQ99_RS18395	COG3302	dmso reductase anchor subunit
CLQ99_RS18400	COG0437	4 iron, 4 sulfur cluster binding
CLQ99_RS18405	COG0243	molybdopterin cofactor binding
CLQ99_RS18415	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CLQ99_RS18425	COG1674	ftsk spoiiie
CLQ99_RS18425	COG1178	ABC-type Fe3 transport system permease component
CLQ99_RS18435	COG0492	ferredoxin-NADP+ reductase activity
CLQ99_RS18440	COG4988	ABC transporter
CLQ99_RS18445	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CLQ99_RS18460	COG0542	response to heat
CLQ99_RS18470	COG1278	Cold shock
CLQ99_RS18480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLQ99_RS18485	COG3593	DNA synthesis involved in DNA repair
CLQ99_RS18495	COG2431	L-lysine efflux transmembrane transporter activity
CLQ99_RS18505	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CLQ99_RS18520	COG0028	Belongs to the TPP enzyme family
CLQ99_RS18525	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
CLQ99_RS18530	COG0702	epimerase
CLQ99_RS18535	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CLQ99_RS18540	COG3023	N-Acetylmuramoyl-L-alanine amidase
CLQ99_RS18545	COG4251	negative regulation of phosphorylation
CLQ99_RS18545	COG3706	GGDEF domain
CLQ99_RS18545	COG5001	Diguanylate cyclase
CLQ99_RS18545	COG2203	Gaf domain
CLQ99_RS18560	COG1126	abc transporter atp-binding protein
CLQ99_RS18565	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS18570	COG4215	(ABC) transporter
CLQ99_RS18575	COG4160	amino acid transport
CLQ99_RS18580	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS18585	COG5002	protein histidine kinase activity
CLQ99_RS18590	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS18605	COG1177	transmembrane transport
CLQ99_RS18610	COG1176	ABC-type spermidine putrescine transport system, permease component I
CLQ99_RS18615	COG3842	ATPase activity
CLQ99_RS18620	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CLQ99_RS18740	COG3039	Transposase
CLQ99_RS18810	COG4695	Portal protein
CLQ99_RS18835	COG3344	reverse transcriptase
CLQ99_RS18845	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CLQ99_RS18850	COG3226	Transcriptional regulator
CLQ99_RS18855	COG0738	Major facilitator superfamily
CLQ99_RS18860	COG0561	phosphatase activity
CLQ99_RS18865	COG2814	Major facilitator Superfamily
CLQ99_RS18875	COG0671	phosphoesterase, PA-phosphatase related
CLQ99_RS18880	COG1349	DNA-binding transcription factor activity
CLQ99_RS18885	COG1686	Belongs to the peptidase S11 family
CLQ99_RS18890	COG0625	glutathione transferase activity
CLQ99_RS18895	COG2133	pyrroloquinoline quinone binding
CLQ99_RS18905	COG2223	nitrite transmembrane transporter activity
CLQ99_RS18930	COG0747	negative chemotaxis
CLQ99_RS18945	COG0303	'Molybdopterin
CLQ99_RS18950	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CLQ99_RS18955	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CLQ99_RS18960	COG1882	Formate acetyltransferase
CLQ99_RS18965	COG0561	phosphatase activity
CLQ99_RS18975	COG1609	Transcriptional regulator
CLQ99_RS18980	COG2271	Major facilitator Superfamily
CLQ99_RS18995	COG0488	(ABC) transporter
CLQ99_RS19000	COG2365	Tyrosine phosphatase family
CLQ99_RS19005	COG1376	ErfK ybiS ycfS ynhG family protein
CLQ99_RS19010	COG2188	Transcriptional regulator
CLQ99_RS19015	COG2723	6-phospho-beta-galactosidase activity
CLQ99_RS19020	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CLQ99_RS19025	COG1321	iron dependent repressor
CLQ99_RS19035	COG2194	sulfuric ester hydrolase activity
CLQ99_RS19040	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CLQ99_RS19055	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS19060	COG0765	amino acid transport
CLQ99_RS19065	COG1126	abc transporter atp-binding protein
CLQ99_RS19070	COG0668	transmembrane transport
CLQ99_RS19080	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CLQ99_RS19090	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CLQ99_RS19100	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CLQ99_RS19105	COG1199	ATP-dependent helicase activity
CLQ99_RS19110	COG0513	Belongs to the DEAD box helicase family
CLQ99_RS19115	COG3958	Transketolase
CLQ99_RS19120	COG3959	Transketolase, thiamine diphosphate binding domain
CLQ99_RS19125	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS19130	COG2271	Major facilitator Superfamily
CLQ99_RS19135	COG0583	DNA-binding transcription factor activity
CLQ99_RS19140	COG1309	transcriptional regulator
CLQ99_RS19145	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLQ99_RS19150	COG1131	(ABC) transporter
CLQ99_RS19155	COG0842	Transport permease protein
CLQ99_RS19160	COG0842	Transport permease protein
CLQ99_RS19170	COG3568	Endonuclease Exonuclease Phosphatase
CLQ99_RS19175	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CLQ99_RS19180	COG0392	lysyltransferase activity
CLQ99_RS19190	COG0670	Belongs to the BI1 family
CLQ99_RS19195	COG0314	molybdopterin synthase activity
CLQ99_RS19200	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CLQ99_RS19210	COG0521	Mo-molybdopterin cofactor biosynthetic process
CLQ99_RS19235	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS19240	COG0642	Histidine kinase
CLQ99_RS19275	COG2226	methyltransferase
CLQ99_RS19290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CLQ99_RS19295	COG1881	PFAM PEBP family protein
CLQ99_RS19335	COG4677	pectinesterase activity
CLQ99_RS19365	COG0789	Transcriptional regulator
CLQ99_RS19370	COG2200	EAL domain
CLQ99_RS19395	COG0561	phosphatase activity
CLQ99_RS19400	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CLQ99_RS19405	COG4149	molybdate abc transporter
CLQ99_RS19410	COG0725	ABC transporter, periplasmic molybdate-binding protein
CLQ99_RS19420	COG2005	Transcriptional regulator
CLQ99_RS19420	COG3585	molybdate ion transport
CLQ99_RS19425	COG1119	ATPase activity
CLQ99_RS19435	COG1085	galactose-1-phosphate uridylyltransferase
CLQ99_RS19445	COG2017	converts alpha-aldose to the beta-anomer
CLQ99_RS19455	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CLQ99_RS19470	COG3201	nicotinamide mononucleotide transporter
CLQ99_RS19475	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CLQ99_RS19515	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CLQ99_RS19520	COG2885	chlorophyll binding
CLQ99_RS19530	COG3064	Membrane
CLQ99_RS19535	COG0848	biopolymer transport protein
CLQ99_RS19540	COG0811	peptide transport
CLQ99_RS19545	COG0824	Thioesterase
CLQ99_RS19550	COG3790	cyd operon protein YbgE
CLQ99_RS19555	COG4890	Cyd operon protein YbgT
CLQ99_RS19560	COG1294	oxidase, subunit
CLQ99_RS19565	COG1271	oxidase subunit
CLQ99_RS19575	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CLQ99_RS19590	COG0508	dehydrogenase complex catalyzes the overall conversion of
CLQ99_RS19595	COG0567	Dehydrogenase, E1 component
CLQ99_RS19600	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CLQ99_RS19605	COG1053	succinate dehydrogenase
CLQ99_RS19610	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CLQ99_RS19615	COG2009	succinate dehydrogenase
CLQ99_RS19650	COG1984	allophanate hydrolase subunit 2
CLQ99_RS19655	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CLQ99_RS19670	COG0415	Belongs to the DNA photolyase family
CLQ99_RS19700	COG2205	protein histidine kinase activity
CLQ99_RS19705	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS19715	COG0033	Phosphoglucomutase
CLQ99_RS19725	COG0596	Alpha beta hydrolase
CLQ99_RS19740	COG0735	belongs to the Fur family
CLQ99_RS19780	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CLQ99_RS19785	COG1940	carbohydrate kinase activity
CLQ99_RS19785	COG1846	Transcriptional regulator
CLQ99_RS19790	COG0647	UMP catabolic process
CLQ99_RS19795	COG0367	asparagine synthase
CLQ99_RS19840	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CLQ99_RS19850	COG1702	phosphate starvation-inducible protein PhoH
CLQ99_RS19860	COG4535	Mg2 and Co2 transporter CorC
CLQ99_RS19875	COG0765	amino acid transport
CLQ99_RS19880	COG0765	amino acid transport
CLQ99_RS19885	COG1126	abc transporter atp-binding protein
CLQ99_RS19900	COG2888	peptidyl-tyrosine sulfation
CLQ99_RS19915	COG1466	dna polymerase III delta subunit
CLQ99_RS19930	COG0799	negative regulation of ribosome biogenesis
CLQ99_RS19940	COG0768	penicillin binding
CLQ99_RS19945	COG0772	Belongs to the SEDS family
CLQ99_RS19950	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CLQ99_RS19955	COG1686	Belongs to the peptidase S11 family
CLQ99_RS19970	COG0583	DNA-binding transcription factor activity
CLQ99_RS19985	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLQ99_RS20010	COG3069	C4-dicarboxylate transmembrane transporter activity
CLQ99_RS20015	COG3719	Belongs to the RNase T2 family
CLQ99_RS20020	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CLQ99_RS20040	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CLQ99_RS20045	COG0583	DNA-binding transcription factor activity
CLQ99_RS20050	COG3969	phosphoadenosine phosphosulfate
CLQ99_RS20055	COG1475	DNA binding
CLQ99_RS20060	COG0436	Aminotransferase
CLQ99_RS20085	COG1129	ABC transporter
CLQ99_RS20090	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS20095	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS20105	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CLQ99_RS20120	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CLQ99_RS20130	COG0402	S-adenosylhomocysteine deaminase activity
CLQ99_RS20140	COG0483	inositol monophosphate 1-phosphatase activity
CLQ99_RS20145	COG2271	Major facilitator Superfamily
CLQ99_RS20175	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS20180	COG1129	ABC transporter
CLQ99_RS20185	COG0371	Dehydrogenase
CLQ99_RS20190	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS20205	COG2879	small protein
CLQ99_RS20210	COG1966	Carbon starvation protein
CLQ99_RS20220	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS20225	COG3433	isochorismatase activity
CLQ99_RS20225	COG1535	isochorismatase
CLQ99_RS20230	COG1021	2,3-dihydroxybenzoate-AMP ligase
CLQ99_RS20235	COG1169	isochorismate synthase
CLQ99_RS20240	COG4592	Periplasmic binding protein
CLQ99_RS20250	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS20255	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS20260	COG1120	ATPase activity
CLQ99_RS20265	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CLQ99_RS20265	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CLQ99_RS20270	COG3251	PFAM MbtH domain protein
CLQ99_RS20275	COG2382	esterase
CLQ99_RS20285	COG4771	TonB-dependent receptor
CLQ99_RS20290	COG2977	Belongs to the P-Pant transferase superfamily
CLQ99_RS20295	COG3958	Transketolase
CLQ99_RS20300	COG3959	Transketolase, thiamine diphosphate binding domain
CLQ99_RS20310	COG2390	Transcriptional regulator
CLQ99_RS20315	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CLQ99_RS20320	COG1879	ABC-type sugar transport system periplasmic component
CLQ99_RS20330	COG1129	ABC transporter
CLQ99_RS20335	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS20345	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS20355	COG0583	DNA-binding transcription factor activity
CLQ99_RS20360	COG0668	transmembrane transport
CLQ99_RS20370	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CLQ99_RS20395	COG0747	negative chemotaxis
CLQ99_RS20400	COG0601	transmembrane transport
CLQ99_RS20405	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CLQ99_RS20410	COG0444	Belongs to the ABC transporter superfamily
CLQ99_RS20415	COG4608	Belongs to the ABC transporter superfamily
CLQ99_RS20420	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CLQ99_RS20425	COG4221	oxidoreductase activity
CLQ99_RS20435	COG4215	(ABC) transporter
CLQ99_RS20440	COG0765	amino acid transport
CLQ99_RS20445	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
CLQ99_RS20460	COG0697	spore germination
CLQ99_RS20470	COG3698	Phosphodiester glycosidase
CLQ99_RS20520	COG2315	Protein conserved in bacteria
CLQ99_RS20525	COG0778	Nitroreductase
CLQ99_RS20535	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLQ99_RS20545	COG3716	PTS system mannose fructose sorbose family IID component
CLQ99_RS20550	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CLQ99_RS20555	COG2222	sugar isomerase
CLQ99_RS20560	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CLQ99_RS20560	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CLQ99_RS20580	COG0477	Major facilitator Superfamily
CLQ99_RS20585	COG0668	transmembrane transport
CLQ99_RS20615	COG3188	usher protein
CLQ99_RS20630	COG2771	luxR family
CLQ99_RS20640	COG0673	inositol 2-dehydrogenase activity
CLQ99_RS20650	COG2211	Major facilitator Superfamily
CLQ99_RS20655	COG1113	amino acid transport
CLQ99_RS20670	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS20675	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CLQ99_RS20685	COG0531	amino acid
CLQ99_RS20735	COG0667	Aldo Keto reductase
CLQ99_RS20740	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS20745	COG1473	amidohydrolase
CLQ99_RS20765	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS20770	COG1120	ATPase activity
CLQ99_RS20775	COG1566	PFAM secretion protein HlyD family protein
CLQ99_RS20820	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS20825	COG1129	ABC transporter
CLQ99_RS20840	COG0673	inositol 2-dehydrogenase activity
CLQ99_RS20870	COG3104	oligopeptide transport
CLQ99_RS20875	COG1982	Orn Lys Arg decarboxylase major
CLQ99_RS20880	COG0531	amino acid
CLQ99_RS20885	COG3710	Transcriptional regulator
CLQ99_RS20895	COG1560	Kdo2-lipid A biosynthetic process
CLQ99_RS20910	COG3188	usher protein
CLQ99_RS20915	COG3121	Chaperone
CLQ99_RS20920	COG3539	Fimbrial protein
CLQ99_RS20980	COG2501	S4 domain
CLQ99_RS20990	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CLQ99_RS21005	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CLQ99_RS21010	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CLQ99_RS21025	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CLQ99_RS21030	COG4181	ATPase activity
CLQ99_RS21035	COG2755	lipolytic protein G-D-S-L family
CLQ99_RS21040	COG0300	oxidoreductase activity
CLQ99_RS21045	COG3118	belongs to the thioredoxin family
CLQ99_RS21055	COG0390	transport system, permease component
CLQ99_RS21060	COG4619	ABC transporter
CLQ99_RS21065	COG0330	HflC and HflK could
CLQ99_RS21070	COG1585	Membrane protein implicated in regulation of membrane protease activity
CLQ99_RS21085	COG3735	TraB family
CLQ99_RS21090	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLQ99_RS21100	COG2223	nitrite transmembrane transporter activity
CLQ99_RS21105	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CLQ99_RS21105	COG4651	solute:proton antiporter activity
CLQ99_RS21110	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS21150	COG2832	Protein of unknown function (DUF454)
CLQ99_RS21155	COG3923	Primosomal replication protein n
CLQ99_RS21165	COG5464	transposase or invertase
CLQ99_RS21170	COG3264	Mechanosensitive ion channel
CLQ99_RS21170	COG1196	nuclear chromosome segregation
CLQ99_RS21190	COG1309	transcriptional regulator
CLQ99_RS21195	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLQ99_RS21200	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CLQ99_RS21215	COG0110	maltose O-acetyltransferase activity
CLQ99_RS21260	COG1874	Beta-galactosidase
CLQ99_RS21265	COG3867	Arabinogalactan endo-beta-1,4-galactanase
CLQ99_RS21270	COG3833	ABC-type maltose transport systems, permease component
CLQ99_RS21275	COG1175	transmembrane transport
CLQ99_RS21280	COG2182	Extracellular solute-binding protein
CLQ99_RS21290	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CLQ99_RS21305	COG2364	Membrane
CLQ99_RS21335	COG3695	enzyme binding
CLQ99_RS21340	COG3126	Type III secretion system lipoprotein chaperone (YscW)
CLQ99_RS21345	COG1946	Acyl-CoA thioesterase
CLQ99_RS21350	COG0004	ammonium transporteR
CLQ99_RS21355	COG0347	Belongs to the P(II) protein family
CLQ99_RS21360	COG1132	(ABC) transporter
CLQ99_RS21365	COG1132	(ABC) transporter
CLQ99_RS21370	COG1522	sequence-specific DNA binding
CLQ99_RS21385	COG4533	DNA binding
CLQ99_RS21395	COG0824	Thioesterase
CLQ99_RS21400	COG1555	photosystem II stabilization
CLQ99_RS21405	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CLQ99_RS21410	COG0776	regulation of translation
CLQ99_RS21415	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CLQ99_RS21445	COG0271	Belongs to the BolA IbaG family
CLQ99_RS21450	COG3056	Lipoprotein
CLQ99_RS21455	COG2223	nitrite transmembrane transporter activity
CLQ99_RS21460	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CLQ99_RS21465	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CLQ99_RS21470	COG1845	cytochrome c oxidase, subunit III
CLQ99_RS21475	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CLQ99_RS21490	COG1414	Transcriptional regulator
CLQ99_RS21495	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CLQ99_RS21500	COG1053	succinate dehydrogenase
CLQ99_RS21510	COG1053	succinate dehydrogenase
CLQ99_RS21525	COG0673	inositol 2-dehydrogenase activity
CLQ99_RS21530	COG2814	Major facilitator Superfamily
CLQ99_RS21540	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CLQ99_RS21545	COG0693	protein deglycase activity
CLQ99_RS21565	COG0142	geranyltranstransferase activity
CLQ99_RS21575	COG0667	Aldo Keto reductase
CLQ99_RS21580	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CLQ99_RS21600	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CLQ99_RS21600	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CLQ99_RS21610	COG4238	major outer membrane lipoprotein
CLQ99_RS21630	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLQ99_RS21635	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CLQ99_RS21640	COG1862	Preprotein translocase
CLQ99_RS21660	COG0450	alkyl hydroperoxide reductase
CLQ99_RS21665	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS21680	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS21690	COG1228	amidohydrolase
CLQ99_RS21700	COG1335	isochorismatase
CLQ99_RS21705	COG0583	DNA-binding transcription factor activity
CLQ99_RS21710	COG0366	Alpha amylase catalytic
CLQ99_RS21735	COG0420	3'-5' exonuclease activity
CLQ99_RS21740	COG0419	ATPase involved in DNA repair
CLQ99_RS21745	COG1940	carbohydrate kinase activity
CLQ99_RS21760	COG4126	flavin adenine dinucleotide binding
CLQ99_RS21770	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CLQ99_RS21775	COG3416	Protein conserved in bacteria
CLQ99_RS21785	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CLQ99_RS21795	COG1785	Belongs to the alkaline phosphatase family
CLQ99_RS21835	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CLQ99_RS21840	COG1335	isochorismatase
CLQ99_RS21845	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CLQ99_RS21850	COG0113	porphobilinogen synthase activity
CLQ99_RS21860	COG2175	clavaminate synthase activity
CLQ99_RS21865	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CLQ99_RS21870	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CLQ99_RS21875	COG4521	taurine ABC transporter
CLQ99_RS21880	COG2040	homocysteine
CLQ99_RS21885	COG0833	amino acid
CLQ99_RS21895	COG4303	Ethanolamine ammonia lyase large subunit
CLQ99_RS21900	COG4302	ethanolamine ammonia-lyase activity
CLQ99_RS21935	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS21940	COG1126	abc transporter atp-binding protein
CLQ99_RS21945	COG0765	amino acid transport
CLQ99_RS21950	COG0765	amino acid transport
CLQ99_RS21965	COG3188	usher protein
CLQ99_RS21990	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
CLQ99_RS22000	COG3639	organic phosphonate transmembrane transporter activity
CLQ99_RS22040	COG0791	NLP P60 protein
CLQ99_RS22065	COG0582	viral genome integration into host DNA
CLQ99_RS22070	COG1192	Involved in chromosome partitioning
CLQ99_RS22130	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CLQ99_RS22135	COG0022	dehydrogenase e1 component
CLQ99_RS22140	COG0508	dehydrogenase complex catalyzes the overall conversion of
CLQ99_RS22145	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLQ99_RS22170	COG1070	Carbohydrate kinase
CLQ99_RS22175	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS22180	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CLQ99_RS22185	COG3775	system Galactitol-specific IIC component
CLQ99_RS22190	COG0625	glutathione transferase activity
CLQ99_RS22195	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CLQ99_RS22215	COG0579	oxidoreductase
CLQ99_RS22220	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS22225	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CLQ99_RS22230	COG1113	amino acid transport
CLQ99_RS22235	COG1802	Transcriptional regulator
CLQ99_RS22255	COG2195	Cleaves the N-terminal amino acid of tripeptides
CLQ99_RS22260	COG0454	-acetyltransferase
CLQ99_RS22275	COG2991	Protein conserved in bacteria
CLQ99_RS22290	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CLQ99_RS22295	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CLQ99_RS22315	COG3034	peptidoglycan biosynthetic process
CLQ99_RS22320	COG0121	glutamine amidotransferase
CLQ99_RS22330	COG1960	acyl-CoA dehydrogenase activity
CLQ99_RS22335	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CLQ99_RS22345	COG0583	DNA-binding transcription factor activity
CLQ99_RS22355	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CLQ99_RS22365	COG2226	methyltransferase
CLQ99_RS22375	COG1388	LysM domain
CLQ99_RS22375	COG0741	lytic transglycosylase activity
CLQ99_RS22380	COG2226	methyltransferase
CLQ99_RS22390	COG2814	Major facilitator Superfamily
CLQ99_RS22395	COG0583	DNA-binding transcription factor activity
CLQ99_RS22400	COG0656	L-ascorbic acid biosynthetic process
CLQ99_RS22435	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CLQ99_RS22445	COG2011	ABC-type metal ion transport system permease component
CLQ99_RS22450	COG1464	Belongs to the NlpA lipoprotein family
CLQ99_RS22460	COG1720	tRNA m6t6A37 methyltransferase activity
CLQ99_RS22470	COG0791	NLP P60 protein
CLQ99_RS22475	COG3015	lipoprotein NlpE involved in copper resistance
CLQ99_RS22480	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CLQ99_RS22495	COG4568	rho-dependent transcription termination
CLQ99_RS22505	COG0346	lactoylglutathione lyase activity
CLQ99_RS22510	COG1982	Orn Lys Arg decarboxylase major
CLQ99_RS22550	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
CLQ99_RS22560	COG0750	zinc metalloprotease
CLQ99_RS22565	COG0575	Belongs to the CDS family
CLQ99_RS22580	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CLQ99_RS22605	COG0024	Methionine aminopeptidase
CLQ99_RS22610	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CLQ99_RS22625	COG3835	regulator
CLQ99_RS22630	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CLQ99_RS22650	COG2860	membrane
CLQ99_RS22670	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CLQ99_RS22675	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CLQ99_RS22680	COG1120	ATPase activity
CLQ99_RS22690	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CLQ99_RS22775	COG1643	Atp-dependent helicase
CLQ99_RS22780	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
CLQ99_RS22800	COG0617	tRNA 3'-terminal CCA addition
CLQ99_RS22805	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CLQ99_RS22825	COG0726	polysaccharide deacetylase
CLQ99_RS22830	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS22835	COG0842	Transport permease protein
CLQ99_RS22840	COG1131	(ABC) transporter
CLQ99_RS22845	COG0288	reversible hydration of carbon dioxide
CLQ99_RS22855	COG4993	Dehydrogenase
CLQ99_RS22860	COG2132	Multicopper oxidase
CLQ99_RS22915	COG3064	Membrane
CLQ99_RS22930	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CLQ99_RS22935	COG0508	dehydrogenase complex catalyzes the overall conversion of
CLQ99_RS22940	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CLQ99_RS22945	COG2186	Transcriptional regulator
CLQ99_RS22950	COG1113	amino acid transport
CLQ99_RS22955	COG2211	Major facilitator Superfamily
CLQ99_RS22960	COG3940	Belongs to the glycosyl hydrolase 43 family
CLQ99_RS22965	COG3725	Membrane protein required for beta-lactamase induction
CLQ99_RS22970	COG3023	N-Acetylmuramoyl-L-alanine amidase
CLQ99_RS22980	COG4969	Belongs to the N-Me-Phe pilin family
CLQ99_RS22985	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CLQ99_RS22990	COG1459	type II secretion system
CLQ99_RS23015	COG0494	nUDIX hydrolase
CLQ99_RS23035	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CLQ99_RS23040	COG0849	cell division
CLQ99_RS23065	COG0772	Belongs to the SEDS family
CLQ99_RS23080	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CLQ99_RS23085	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CLQ99_RS23090	COG0768	penicillin binding
CLQ99_RS23110	COG1609	Transcriptional regulator
CLQ99_RS23120	COG0028	Belongs to the TPP enzyme family
CLQ99_RS23170	COG0738	Major facilitator superfamily
CLQ99_RS23180	COG0583	DNA-binding transcription factor activity
CLQ99_RS23185	COG2271	Major facilitator Superfamily
CLQ99_RS23190	COG2814	Major facilitator Superfamily
CLQ99_RS23210	COG1178	ABC-type Fe3 transport system permease component
CLQ99_RS23220	COG0586	Pfam SNARE associated Golgi protein
CLQ99_RS23240	COG0235	Class ii aldolase
CLQ99_RS23245	COG0417	DNA replication proofreading
CLQ99_RS23255	COG0564	pseudouridine synthase activity
CLQ99_RS23270	COG3493	citrate carrier protein
CLQ99_RS23285	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CLQ99_RS23290	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CLQ99_RS23300	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CLQ99_RS23350	COG0505	Belongs to the CarA family
CLQ99_RS23415	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CLQ99_RS23440	COG1047	Peptidyl-prolyl cis-trans
CLQ99_RS23455	COG0196	riboflavin kinase activity
CLQ99_RS23470	COG0583	DNA-binding transcription factor activity
CLQ99_RS23495	COG4735	regulation of single-species biofilm formation
CLQ99_RS23500	COG1584	GPR1 FUN34 yaaH family protein
CLQ99_RS23505	COG0477	Major facilitator Superfamily
CLQ99_RS23510	COG0521	Mo-molybdopterin cofactor biosynthetic process
CLQ99_RS23515	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CLQ99_RS23520	COG1115	amino acid carrier protein
CLQ99_RS23535	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CLQ99_RS23545	COG0460	homoserine dehydrogenase
CLQ99_RS23545	COG0527	aspartate kinase activity
CLQ99_RS23555	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
CLQ99_RS23565	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS23570	COG4452	Inner membrane protein CreD
CLQ99_RS23575	COG2205	protein histidine kinase activity
CLQ99_RS23580	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS23585	COG3045	CreA protein
CLQ99_RS23590	COG3708	Transcriptional regulator
CLQ99_RS23590	COG2207	Transcriptional regulator
CLQ99_RS23610	COG0741	lytic transglycosylase activity
CLQ99_RS23615	COG0488	(ABC) transporter
CLQ99_RS23625	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CLQ99_RS23630	COG0560	Phosphoserine phosphatase
CLQ99_RS23640	COG3726	membrane protein affecting hemolysin expression
CLQ99_RS23670	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CLQ99_RS23675	COG0084	hydrolase, TatD family'
CLQ99_RS23680	COG4667	esterase of the alpha-beta hydrolase superfamily
CLQ99_RS23690	COG2823	Periplasmic or secreted lipoprotein
CLQ99_RS23700	COG1011	Hydrolase
CLQ99_RS23705	COG0456	acetyltransferase
CLQ99_RS23710	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
CLQ99_RS23740	COG3706	GGDEF domain
CLQ99_RS23745	COG4114	ferric iron reductase
CLQ99_RS23750	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS23750	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS23755	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CLQ99_RS23760	COG2197	response regulator
CLQ99_RS23765	COG2197	response regulator
CLQ99_RS23785	COG2966	Psort location CytoplasmicMembrane, score
CLQ99_RS23800	COG1484	DNA-dependent DNA replication
CLQ99_RS23815	COG5464	transposase or invertase
CLQ99_RS23825	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CLQ99_RS23830	COG3716	PTS system mannose fructose sorbose family IID component
CLQ99_RS23835	COG3715	PTS system
CLQ99_RS23850	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CLQ99_RS23850	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CLQ99_RS23860	COG1063	alcohol dehydrogenase
CLQ99_RS23865	COG1802	Transcriptional regulator
CLQ99_RS23870	COG2271	Major facilitator Superfamily
CLQ99_RS23875	COG0456	acetyltransferase
CLQ99_RS23875	COG1214	PFAM Peptidase M22, glycoprotease
CLQ99_RS23885	COG1737	Transcriptional regulator
CLQ99_RS23890	COG0800	Aldolase
CLQ99_RS23895	COG3734	2-keto-3-deoxy-galactonokinase
CLQ99_RS23910	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CLQ99_RS23940	COG1846	Transcriptional regulator
CLQ99_RS23950	COG0179	Fumarylacetoacetate (FAA) hydrolase
CLQ99_RS23960	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS23965	COG3384	dioxygenase
CLQ99_RS23975	COG3971	2-oxopent-4-enoate hydratase activity
CLQ99_RS23995	COG2368	4-hydroxyphenylacetate
CLQ99_RS24000	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CLQ99_RS24015	COG1966	Carbon starvation protein
CLQ99_RS24020	COG2879	small protein
CLQ99_RS24025	COG0523	cobalamin synthesis protein
CLQ99_RS24035	COG1012	belongs to the aldehyde dehydrogenase family
CLQ99_RS24040	COG5464	transposase or invertase
CLQ99_RS24045	COG1917	Cupin 2, conserved barrel domain protein
CLQ99_RS24045	COG2207	Transcriptional regulator
CLQ99_RS24055	COG2733	membrane
CLQ99_RS24070	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
CLQ99_RS24075	COG1924	4 iron, 4 sulfur cluster binding
CLQ99_RS24090	COG1566	PFAM secretion protein HlyD family protein
CLQ99_RS24100	COG5457	Domain of unknown function (DUF1127)
CLQ99_RS24105	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CLQ99_RS24115	COG0583	DNA-binding transcription factor activity
CLQ99_RS24120	COG2249	NAD(P)H dehydrogenase (quinone) activity
CLQ99_RS24130	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS24135	COG1129	ABC transporter
CLQ99_RS24140	COG1879	ABC-type sugar transport system periplasmic component
CLQ99_RS24150	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLQ99_RS24155	COG0842	Transport permease protein
CLQ99_RS24155	COG1129	ABC transporter
CLQ99_RS24160	COG0842	Transport permease protein
CLQ99_RS24195	COG2850	peptidyl-arginine hydroxylation
CLQ99_RS24210	COG5002	protein histidine kinase activity
CLQ99_RS24215	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS24225	COG1538	Outer membrane efflux protein
CLQ99_RS24230	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLQ99_RS24235	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLQ99_RS24240	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CLQ99_RS24250	COG3040	lipid binding
CLQ99_RS24255	COG0789	Transcriptional regulator
CLQ99_RS24265	COG0300	oxidoreductase activity
CLQ99_RS24280	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CLQ99_RS24300	COG3272	Protein of unknown function (DUF1722)
CLQ99_RS24305	COG4580	involved in the transport of maltose and maltodextrins
CLQ99_RS24315	COG2211	Major facilitator Superfamily
CLQ99_RS24320	COG3507	Belongs to the glycosyl hydrolase 43 family
CLQ99_RS24425	COG3039	Transposase
CLQ99_RS24435	COG0582	viral genome integration into host DNA
CLQ99_RS24450	COG0288	reversible hydration of carbon dioxide
CLQ99_RS24455	COG0659	secondary active sulfate transmembrane transporter activity
CLQ99_RS24460	COG1064	alcohol dehydrogenase
CLQ99_RS24465	COG1175	transmembrane transport
CLQ99_RS24470	COG0395	ABC-type sugar transport system, permease component
CLQ99_RS24475	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CLQ99_RS24480	COG3842	ATPase activity
CLQ99_RS24485	COG1653	transport
CLQ99_RS24495	COG1082	Xylose isomerase domain protein TIM barrel
CLQ99_RS24505	COG3962	Belongs to the TPP enzyme family
CLQ99_RS24510	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS24515	COG1737	Transcriptional regulator
CLQ99_RS24515	COG0837	glucose binding
CLQ99_RS24545	COG3718	enzyme involved in inositol metabolism
CLQ99_RS24560	COG0433	COG0433 Predicted ATPase
CLQ99_RS24565	COG0795	lipopolysaccharide-transporting ATPase activity
CLQ99_RS24570	COG0795	lipopolysaccharide-transporting ATPase activity
CLQ99_RS24585	COG2927	DNA polymerase III (CHI subunit)
CLQ99_RS24590	COG0525	valine-tRNA ligase activity
CLQ99_RS24615	COG2188	Transcriptional regulator
CLQ99_RS24620	COG1288	antiporter activity
CLQ99_RS24625	COG1228	amidohydrolase
CLQ99_RS24630	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS24635	COG2222	sugar isomerase
CLQ99_RS24640	COG2731	YhcH YjgK YiaL family protein
CLQ99_RS24685	COG1263	PTS System
CLQ99_RS24685	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CLQ99_RS24690	COG0366	Alpha amylase catalytic
CLQ99_RS24695	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CLQ99_RS24700	COG1486	melibiose metabolic process
CLQ99_RS24720	COG0602	queuosine metabolic process
CLQ99_RS24725	COG2026	Addiction module toxin, RelE StbE family
CLQ99_RS24730	COG3077	Addiction module antitoxin, RelB DinJ family
CLQ99_RS24735	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CLQ99_RS24735	COG3711	transcriptional antiterminator
CLQ99_RS24740	COG2706	6-phosphogluconolactonase activity
CLQ99_RS24755	COG3964	amidohydrolase
CLQ99_RS24790	COG0312	modulator of DNA gyrase
CLQ99_RS24810	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CLQ99_RS24820	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS24825	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS24830	COG1129	ABC transporter
CLQ99_RS24835	COG1879	ABC-type sugar transport system periplasmic component
CLQ99_RS24855	COG2105	PFAM AIG2 family protein
CLQ99_RS24860	COG2911	Protein conserved in bacteria
CLQ99_RS24865	COG0729	surface antigen
CLQ99_RS24875	COG1253	flavin adenine dinucleotide binding
CLQ99_RS24890	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CLQ99_RS24905	COG1733	regulation of RNA biosynthetic process
CLQ99_RS24910	COG0702	epimerase
CLQ99_RS24920	COG0697	spore germination
CLQ99_RS24930	COG1113	amino acid transport
CLQ99_RS24935	COG0545	Peptidyl-prolyl cis-trans isomerase
CLQ99_RS24940	COG3061	Opacity-associated protein A
CLQ99_RS24950	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CLQ99_RS24955	COG2965	DNA replication, synthesis of RNA primer
CLQ99_RS25015	COG1073	alpha beta
CLQ99_RS25020	COG3650	response to hydrogen peroxide
CLQ99_RS25030	COG1960	acyl-CoA dehydrogenase activity
CLQ99_RS25035	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CLQ99_RS25040	COG0557	exoribonuclease II activity
CLQ99_RS25055	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
CLQ99_RS25065	COG0330	HflC and HflK could
CLQ99_RS25070	COG0330	HflC and HflK could
CLQ99_RS25075	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CLQ99_RS25095	COG0860	N-Acetylmuramoyl-L-alanine amidase
CLQ99_RS25100	COG0802	atpase or kinase
CLQ99_RS25105	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CLQ99_RS25105	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CLQ99_RS25110	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CLQ99_RS25135	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CLQ99_RS25160	COG1511	domain protein
CLQ99_RS25160	COG3264	Mechanosensitive ion channel
CLQ99_RS25175	COG1053	succinate dehydrogenase
CLQ99_RS25180	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CLQ99_RS25200	COG2076	Multidrug Resistance protein
CLQ99_RS25205	COG5510	response to toxic substance
CLQ99_RS25220	COG1509	lysine 2,3-aminomutase activity
CLQ99_RS25290	COG0531	amino acid
CLQ99_RS25295	COG3030	protein affecting phage T7 exclusion by the F plasmid
CLQ99_RS25305	COG1027	Aspartate ammonia-lyase
CLQ99_RS25310	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CLQ99_RS25325	COG1309	transcriptional regulator
CLQ99_RS25355	COG0457	Tetratricopeptide repeat
CLQ99_RS25360	COG0726	polysaccharide deacetylase
CLQ99_RS25360	COG1649	PFAM Uncharacterised BCR, COG1649
CLQ99_RS25365	COG1215	transferase activity, transferring glycosyl groups
CLQ99_RS25385	COG0861	Integral membrane protein TerC family
CLQ99_RS25420	COG1486	melibiose metabolic process
CLQ99_RS25430	COG2169	Transcriptional regulator
CLQ99_RS25445	COG2824	Alkylphosphonate utilization operon protein PhnA
CLQ99_RS25450	COG2764	glyoxalase bleomycin resistance protein dioxygenase
CLQ99_RS25455	COG2188	Transcriptional regulator
CLQ99_RS25460	COG3624	Phosphonate C-P lyase system protein PhnG
CLQ99_RS25465	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
CLQ99_RS25470	COG3626	phosphonate metabolism
CLQ99_RS25475	COG3627	carbon phosphorus lyase activity
CLQ99_RS25480	COG4107	phosphonate C-P lyase system protein PhnK
CLQ99_RS25485	COG4778	phosphonate C-P lyase system protein PhnL
CLQ99_RS25490	COG3454	Phosphonate metabolism
CLQ99_RS25500	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CLQ99_RS25510	COG4191	Histidine kinase
CLQ99_RS25510	COG0784	Response regulator, receiver
CLQ99_RS25515	COG1129	ABC transporter
CLQ99_RS25520	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS25555	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CLQ99_RS25560	COG1301	dicarboxylic acid transport
CLQ99_RS25570	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CLQ99_RS25580	COG3162	membrane
CLQ99_RS25610	COG3539	Fimbrial protein
CLQ99_RS25615	COG1346	cytolysis
CLQ99_RS25620	COG1380	Effector of murein hydrolase LrgA
CLQ99_RS25625	COG0583	DNA-binding transcription factor activity
CLQ99_RS25630	COG0025	NhaP-type Na H and K H
CLQ99_RS25635	COG2252	PERMEase
CLQ99_RS25640	COG0625	glutathione transferase activity
CLQ99_RS25645	COG0789	Transcriptional regulator
CLQ99_RS25655	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CLQ99_RS25690	COG1234	tRNA 3'-trailer cleavage
CLQ99_RS25695	COG1609	Transcriptional regulator
CLQ99_RS25700	COG0483	inositol monophosphate 1-phosphatase activity
CLQ99_RS25715	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CLQ99_RS25735	COG4771	TonB-dependent receptor
CLQ99_RS25740	COG0741	lytic transglycosylase activity
CLQ99_RS25760	COG2315	Protein conserved in bacteria
CLQ99_RS25765	COG0432	Pfam Uncharacterised protein family UPF0047
CLQ99_RS25780	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CLQ99_RS25785	COG0305	Participates in initiation and elongation during chromosome replication
CLQ99_RS25800	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CLQ99_RS25810	COG0735	belongs to the Fur family
CLQ99_RS25815	COG3237	CsbD-like
CLQ99_RS25820	COG0534	Mate efflux family protein
CLQ99_RS25830	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CLQ99_RS25905	COG0251	oxidation-reduction process
CLQ99_RS25915	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CLQ99_RS25935	COG0527	aspartate kinase activity
CLQ99_RS25990	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CLQ99_RS26020	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CLQ99_RS26030	COG0456	acetyltransferase
CLQ99_RS26060	COG0151	Belongs to the GarS family
CLQ99_RS26070	COG4191	Histidine kinase
CLQ99_RS26075	COG3678	ATP-independent chaperone mediated protein folding
CLQ99_RS26110	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
CLQ99_RS26125	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CLQ99_RS26130	COG2104	thiamine diphosphate biosynthetic process
CLQ99_RS26145	COG3706	GGDEF domain
CLQ99_RS26155	COG1447	Phosphotransferase system cellobiose-specific component IIA
CLQ99_RS26160	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CLQ99_RS26195	COG0250	Participates in transcription elongation, termination and antitermination
CLQ99_RS26245	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CLQ99_RS26275	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
CLQ99_RS26285	COG1739	Uncharacterized protein family UPF0029
CLQ99_RS26330	COG0805	protein transport
CLQ99_RS26350	COG3165	ubiquinone biosynthetic process from chorismate
CLQ99_RS26380	COG0583	DNA-binding transcription factor activity
CLQ99_RS26385	COG0697	spore germination
CLQ99_RS26390	COG0561	phosphatase activity
CLQ99_RS26395	COG2267	carboxylic ester hydrolase activity
CLQ99_RS26400	COG1280	lysine exporter protein (LysE YggA)
CLQ99_RS26410	COG1280	lysine exporter protein (LysE YggA)
CLQ99_RS26445	COG0210	DNA helicase
CLQ99_RS26450	COG1011	Hydrolase
CLQ99_RS26480	COG3072	Adenylate cyclase
CLQ99_RS26495	COG2959	enzyme of heme biosynthesis
CLQ99_RS26500	COG3071	HemY protein
CLQ99_RS26545	COG2244	polysaccharide biosynthetic process
CLQ99_RS26550	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CLQ99_RS26555	COG0456	acetyltransferase
CLQ99_RS26560	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CLQ99_RS26565	COG1088	dTDP-glucose 4,6-dehydratase activity
CLQ99_RS26570	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CLQ99_RS26575	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CLQ99_RS26585	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CLQ99_RS26590	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CLQ99_RS26600	COG3118	belongs to the thioredoxin family
CLQ99_RS26630	COG1811	Na channel or pump
CLQ99_RS26640	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CLQ99_RS26645	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CLQ99_RS26655	COG0583	DNA-binding transcription factor activity
CLQ99_RS26660	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CLQ99_RS26675	COG3978	acetolactate synthase activity
CLQ99_RS26695	COG3085	chromosome segregation
CLQ99_RS26770	COG0583	DNA-binding transcription factor activity
CLQ99_RS26795	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CLQ99_RS26810	COG3443	Belongs to the bacterial solute-binding protein 9 family
CLQ99_RS26815	COG2207	Transcriptional regulator
CLQ99_RS26825	COG0371	Dehydrogenase
CLQ99_RS26830	COG0697	spore germination
CLQ99_RS26840	COG0583	DNA-binding transcription factor activity
CLQ99_RS26850	COG0737	Belongs to the 5'-nucleotidase family
CLQ99_RS26860	COG0460	homoserine dehydrogenase
CLQ99_RS26860	COG0527	aspartate kinase activity
CLQ99_RS26865	COG0626	cystathionine gamma-synthase activity
CLQ99_RS26880	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CLQ99_RS26885	COG1609	Transcriptional regulator
CLQ99_RS26890	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CLQ99_RS26905	COG1575	Belongs to the MenA family. Type 1 subfamily
CLQ99_RS26925	COG3678	ATP-independent chaperone mediated protein folding
CLQ99_RS26930	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS26935	COG2205	protein histidine kinase activity
CLQ99_RS26940	COG2258	MOSC domain
CLQ99_RS26945	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CLQ99_RS26990	COG1129	ABC transporter
CLQ99_RS26995	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS27000	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS27005	COG1454	alcohol dehydrogenase
CLQ99_RS27015	COG2211	Major facilitator Superfamily
CLQ99_RS27075	COG0205	6-phosphofructokinase activity
CLQ99_RS27090	COG3383	formate dehydrogenase (NAD+) activity
CLQ99_RS27090	COG0243	molybdopterin cofactor binding
CLQ99_RS27095	COG3383	formate dehydrogenase (NAD+) activity
CLQ99_RS27095	COG0243	molybdopterin cofactor binding
CLQ99_RS27100	COG0437	4 iron, 4 sulfur cluster binding
CLQ99_RS27105	COG2864	formate dehydrogenase
CLQ99_RS27120	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CLQ99_RS27125	COG0657	acetylesterase activity
CLQ99_RS27130	COG0456	acetyltransferase
CLQ99_RS27145	COG1011	Hydrolase
CLQ99_RS27160	COG3852	Histidine kinase
CLQ99_RS27170	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CLQ99_RS27200	COG0204	Acyl-transferase
CLQ99_RS27210	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CLQ99_RS27215	COG3084	Protein conserved in bacteria
CLQ99_RS27225	COG1763	Mo-molybdopterin cofactor biosynthetic process
CLQ99_RS27255	COG2186	Transcriptional regulator
CLQ99_RS27260	COG0477	Major facilitator Superfamily
CLQ99_RS27265	COG1609	Transcriptional regulator
CLQ99_RS27270	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CLQ99_RS27280	COG1172	Belongs to the binding-protein-dependent transport system permease family
CLQ99_RS27285	COG1129	ABC transporter
CLQ99_RS27315	COG1522	sequence-specific DNA binding
CLQ99_RS27320	COG0716	FMN binding
CLQ99_RS27335	COG3312	ion transport
CLQ99_RS27390	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CLQ99_RS27395	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CLQ99_RS27400	COG0573	inorganic phosphate transmembrane transporter activity
CLQ99_RS27405	COG0581	inorganic phosphate transmembrane transporter activity
CLQ99_RS27410	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CLQ99_RS27415	COG0704	Plays a role in the regulation of phosphate uptake
CLQ99_RS27430	COG2382	esterase
CLQ99_RS27435	COG0363	glucosamine-6-phosphate deaminase activity
CLQ99_RS27440	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CLQ99_RS27450	COG2252	PERMEase
CLQ99_RS27455	COG0431	NADPH-dependent FMN reductase
CLQ99_RS27460	COG2091	lysine biosynthetic process via aminoadipic acid
CLQ99_RS27490	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CLQ99_RS27755	COG3344	reverse transcriptase
CLQ99_RS28050	COG3039	Transposase
CLQ99_RS28110	COG2135	peptidase activity
CLQ99_RS28370	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CLQ99_RS28465	COG3344	reverse transcriptase
CLQ99_RS28610	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
CLQ99_RS28665	COG2203	Gaf domain
CLQ99_RS28665	COG2199	diguanylate cyclase activity
CLQ99_RS28670	COG1716	ATPase activity
CLQ99_RS28670	COG5001	Diguanylate cyclase
CLQ99_RS28690	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CLQ99_RS28700	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CLQ99_RS28745	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CLQ99_RS28775	COG0739	heme binding
CLQ99_RS28785	COG2132	Multicopper oxidase
CLQ99_RS28790	COG3667	copper resistance
CLQ99_RS28795	COG2372	response to copper ion
CLQ99_RS28800	COG1276	copper resistance
CLQ99_RS28805	COG0745	RESPONSE REGULATOR receiver
CLQ99_RS28810	COG2205	protein histidine kinase activity
CLQ99_RS28830	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CLQ99_RS28845	COG0431	NADPH-dependent FMN reductase
CLQ99_RS28875	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CLQ99_RS28940	COG2801	Transposase and inactivated derivatives
CLQ99_RS28950	COG0501	Belongs to the peptidase M48B family
CLQ99_RS28970	COG0542	response to heat
CLQ99_RS28975	COG0071	Belongs to the small heat shock protein (HSP20) family
CLQ99_RS29130	COG1695	Transcriptional regulator
CLQ99_RS29165	COG3173	Aminoglycoside phosphotransferase
CLQ99_RS29185	COG4644	lycopene metabolic process
CLQ99_RS29280	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CLQ99_RS29290	COG3012	SEC-C Motif Domain Protein
CLQ99_RS29290	COG3318	Belongs to the UPF0149 family
CLQ99_RS29310	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
CLQ99_RS29545	COG5499	transcription regulator containing HTH domain
CLQ99_RS29615	COG0656	L-ascorbic acid biosynthetic process
CLQ99_RS29625	COG3436	PFAM IS66 Orf2 family protein
CLQ99_RS29635	COG1349	DNA-binding transcription factor activity
CLQ99_RS29650	COG2814	Major facilitator Superfamily
CLQ99_RS29670	COG1304	FMN binding
CLQ99_RS29675	COG2072	flavoprotein involved in K transport
CLQ99_RS29680	COG1177	transmembrane transport
CLQ99_RS29685	COG1176	ABC-type spermidine putrescine transport system, permease component I
CLQ99_RS29700	COG0583	DNA-binding transcription factor activity
CLQ99_RS29710	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CLQ99_RS29720	COG3321	synthase
CLQ99_RS29720	COG1028	Short-chain dehydrogenase reductase Sdr
CLQ99_RS29720	COG0604	alcohol dehydrogenase
CLQ99_RS29725	COG3842	ATPase activity
CLQ99_RS29785	COG1475	DNA binding
CLQ99_RS29870	COG3344	reverse transcriptase
CLQ99_RS29930	COG3064	Membrane