A0U89_RS00035	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS00035	SM00843	A0U89_RS00035
A0U89_RS00045	SM00363	S4 RNA-binding domain
A0U89_RS00060	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U89_RS00085	SM00642	Alpha-amylase domain
A0U89_RS00090	SM00640	Glycosyl hydrolases family 32
A0U89_RS00110	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS00185	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A0U89_RS00200	SM00861	Transketolase, pyrimidine binding domain
A0U89_RS00275	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS00290	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS00360	SM00100	Cyclic nucleotide-monophosphate binding domain
A0U89_RS00360	SM00419	helix_turn_helix, cAMP Regulatory protein
A0U89_RS00370	SM00072	Guanylate kinase homologues.
A0U89_RS00405	SM00387	Histidine kinase-like ATPases
A0U89_RS00440	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A0U89_RS00440	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A0U89_RS00440	SM00091	PAS domain
A0U89_RS00440	SM00387	Histidine kinase-like ATPases
A0U89_RS00440	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS00440	SM00448	cheY-homologous receiver domain
A0U89_RS00505	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U89_RS00520	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0U89_RS00525	SM00244	prohibitin homologues
A0U89_RS00550	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS00575	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS00585	SM00822	A0U89_RS00585
A0U89_RS00645	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS00700	SM00829	Enoylreductase
A0U89_RS00715	SM00487	DEAD-like helicases superfamily
A0U89_RS00715	SM00490	helicase superfamily c-terminal domain
A0U89_RS00740	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U89_RS00745	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS00745	SM00962	SRP54-type protein, GTPase domain
A0U89_RS00745	SM00963	SRP54-type protein, helical bundle domain
A0U89_RS00755	SM00829	Enoylreductase
A0U89_RS00770	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A0U89_RS00790	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A0U89_RS00790	SM00091	PAS domain
A0U89_RS00790	SM00387	Histidine kinase-like ATPases
A0U89_RS00790	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS00790	SM00448	cheY-homologous receiver domain
A0U89_RS00810	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A0U89_RS00920	SM00852	Probable molybdopterin binding domain
A0U89_RS00975	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A0U89_RS00980	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A0U89_RS00980	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A0U89_RS01040	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS01055	SM01133	A0U89_RS01055
A0U89_RS01060	SM00420	helix_turn_helix, Deoxyribose operon repressor
A0U89_RS01060	SM01134	A0U89_RS01060
A0U89_RS01140	SM00052	Putative diguanylate phosphodiesterase
A0U89_RS01150	SM00822	A0U89_RS01150
A0U89_RS01155	SM00014	Acid phosphatase homologues
A0U89_RS01185	SM00564	beta-propeller repeat
A0U89_RS01195	SM00642	Alpha-amylase domain
A0U89_RS01200	SM00642	Alpha-amylase domain
A0U89_RS01205	SM00642	Alpha-amylase domain
A0U89_RS01215	SM00642	Alpha-amylase domain
A0U89_RS01235	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0U89_RS01245	SM00849	Metallo-beta-lactamase superfamily
A0U89_RS01260	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A0U89_RS01300	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS01310	SM00411	bacterial (prokaryotic) histone like domain
A0U89_RS01315	SM01092	CO dehydrogenase flavoprotein C-terminal domain
A0U89_RS01320	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A0U89_RS01350	SM00899	A0U89_RS01350
A0U89_RS01360	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS01390	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS01465	SM00986	Uracil DNA glycosylase superfamily
A0U89_RS01465	SM00987	UreE urease accessory protein, C-terminal domain 
A0U89_RS01550	SM01018	B12 binding domain
A0U89_RS01555	SM00829	Enoylreductase
A0U89_RS01575	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS01590	SM00342	helix_turn_helix, arabinose operon control protein
A0U89_RS01595	SM00829	Enoylreductase
A0U89_RS01660	SM00878	Biotin carboxylase C-terminal domain
A0U89_RS01695	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A0U89_RS01800	SM00244	prohibitin homologues
A0U89_RS01910	SM00838	Elongation factor G C-terminus
A0U89_RS01935	SM00841	Elongation factor P, C-terminal
A0U89_RS01935	SM01185	A0U89_RS01935
A0U89_RS01950	SM00477	DNA/RNA non-specific endonuclease
A0U89_RS01950	SM00892	DNA/RNA non-specific endonuclease
A0U89_RS02110	SM00903	Flavin reductase like domain
A0U89_RS02170	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS02185	SM00530	Helix-turn-helix XRE-family like proteins 
A0U89_RS02205	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A0U89_RS02205	SM00448	cheY-homologous receiver domain
A0U89_RS02205	SM00911	HWE histidine kinase
A0U89_RS02250	SM00825	Beta-ketoacyl synthase
A0U89_RS02415	SM00878	Biotin carboxylase C-terminal domain
A0U89_RS02425	SM00245	tail specific protease
A0U89_RS02435	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS02445	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS02450	SM00062	Bacterial periplasmic substrate-binding proteins
A0U89_RS02450	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A0U89_RS02460	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS02475	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U89_RS02475	SM00322	K homology RNA-binding domain
A0U89_RS02500	SM01387	A0U89_RS02500
A0U89_RS02505	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U89_RS02505	SM00322	K homology RNA-binding domain
A0U89_RS02530	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U89_RS02630	SM01060	A0U89_RS02630
A0U89_RS02640	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS02640	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U89_RS02670	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS02710	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U89_RS02740	SM00851	MGS-like domain
A0U89_RS02740	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A0U89_RS02745	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A0U89_RS02755	SM00400	zinc finger
A0U89_RS02755	SM00493	A0U89_RS02755
A0U89_RS02790	SM00650	Ribosomal RNA adenine dimethylases
A0U89_RS02905	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0U89_RS02910	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS02915	SM00363	S4 RNA-binding domain
A0U89_RS02945	SM00267	diguanylate cyclase
A0U89_RS02990	SM00957	SecA DEAD-like domain
A0U89_RS02990	SM00958	SecA preprotein cross-linking domain
A0U89_RS03005	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A0U89_RS03010	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS03055	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS03070	SM00448	cheY-homologous receiver domain
A0U89_RS03070	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS03075	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS03115	SM00248	ankyrin repeats
A0U89_RS03125	SM00861	Transketolase, pyrimidine binding domain
A0U89_RS03135	SM01350	A0U89_RS03135
A0U89_RS03155	SM01134	A0U89_RS03155
A0U89_RS03190	SM00840	A0U89_RS03190
A0U89_RS03200	SM00257	Lysin motif
A0U89_RS03205	SM00363	S4 RNA-binding domain
A0U89_RS03205	SM01390	A0U89_RS03205
A0U89_RS03240	SM00852	Probable molybdopterin binding domain
A0U89_RS03270	SM01323	A0U89_RS03270
A0U89_RS03295	SM01409	A0U89_RS03295
A0U89_RS03300	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0U89_RS03300	SM00954	Region found in RelA / SpoT proteins
A0U89_RS03315	SM00358	Double-stranded RNA binding motif
A0U89_RS03315	SM00535	Ribonuclease III family
A0U89_RS03350	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U89_RS03360	SM00935	Outer membrane protein (OmpH-like)
A0U89_RS03405	SM01234	A0U89_RS03405
A0U89_RS03425	SM00267	diguanylate cyclase
A0U89_RS03475	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS03490	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0U89_RS03495	SM00474	3'-5' exonuclease
A0U89_RS03565	SM00420	helix_turn_helix, Deoxyribose operon repressor
A0U89_RS03565	SM01134	A0U89_RS03565
A0U89_RS03570	SM00487	DEAD-like helicases superfamily
A0U89_RS03570	SM00490	helicase superfamily c-terminal domain
A0U89_RS03610	SM00978	A0U89_RS03610
A0U89_RS03640	SM00028	Tetratricopeptide repeats
A0U89_RS03650	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A0U89_RS03650	SM00534	ATPase domain of DNA mismatch repair MUTS family
A0U89_RS03740	SM00978	A0U89_RS03740
A0U89_RS03745	SM00925	MltA specific insert domain
A0U89_RS03755	SM01235	A0U89_RS03755
A0U89_RS03780	SM00822	A0U89_RS03780
A0U89_RS03800	SM00883	Chaperonin 10 Kd subunit
A0U89_RS03810	SM00491	A0U89_RS03810
A0U89_RS03830	SM00986	Uracil DNA glycosylase superfamily
A0U89_RS03830	SM00987	UreE urease accessory protein, C-terminal domain 
A0U89_RS03870	SM00363	S4 RNA-binding domain
A0U89_RS03875	SM00490	helicase superfamily c-terminal domain
A0U89_RS03885	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U89_RS03930	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS03935	SM00562	A0U89_RS03935
A0U89_RS04120	SM00448	cheY-homologous receiver domain
A0U89_RS04125	SM00822	A0U89_RS04125
A0U89_RS04195	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS04220	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
A0U89_RS04225	SM00507	HNH nucleases
A0U89_RS04255	SM00479	A0U89_RS04255
A0U89_RS04295	SM00564	beta-propeller repeat
A0U89_RS04385	SM00563	Phosphate acyltransferases
A0U89_RS04460	SM00855	Phosphoglycerate mutase family
A0U89_RS04465	SM00830	Chorismate mutase type II
A0U89_RS04485	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0U89_RS04485	SM01091	Transporter associated domain
A0U89_RS04500	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U89_RS04505	SM00563	Phosphate acyltransferases
A0U89_RS04525	SM00028	Tetratricopeptide repeats
A0U89_RS04530	SM00448	cheY-homologous receiver domain
A0U89_RS04540	SM01058	CarD-like/TRCF domain
A0U89_RS04550	SM00829	Enoylreductase
A0U89_RS04605	SM00363	S4 RNA-binding domain
A0U89_RS04610	SM00861	Transketolase, pyrimidine binding domain
A0U89_RS04655	SM00267	diguanylate cyclase
A0U89_RS04675	SM00052	Putative diguanylate phosphodiesterase
A0U89_RS04675	SM00267	diguanylate cyclase
A0U89_RS04695	SM00357	Cold shock protein domain
A0U89_RS04740	SM00861	Transketolase, pyrimidine binding domain
A0U89_RS04755	SM01329	A0U89_RS04755
A0U89_RS04785	SM00919	Malic enzyme, NAD binding domain
A0U89_RS04785	SM01274	A0U89_RS04785
A0U89_RS04805	SM00861	Transketolase, pyrimidine binding domain
A0U89_RS04885	SM00857	Resolvase, N terminal domain
A0U89_RS04895	SM00470	ParB-like nuclease domain
A0U89_RS04935	SM00342	helix_turn_helix, arabinose operon control protein
A0U89_RS04990	SM00855	Phosphoglycerate mutase family
A0U89_RS05025	SM00534	ATPase domain of DNA mismatch repair MUTS family
A0U89_RS05115	SM00984	UDP binding domain
A0U89_RS05200	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS05240	SM00220	Serine/Threonine protein kinases, catalytic domain
A0U89_RS05275	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS05335	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS05345	SM00028	Tetratricopeptide repeats
A0U89_RS05370	SM00529	Helix-turn-helix diphteria tox regulatory element
A0U89_RS05400	SM00563	Phosphate acyltransferases
A0U89_RS05435	SM00829	Enoylreductase
A0U89_RS05530	SM00487	DEAD-like helicases superfamily
A0U89_RS05530	SM00490	helicase superfamily c-terminal domain
A0U89_RS05630	SM00530	Helix-turn-helix XRE-family like proteins 
A0U89_RS05885	SM00903	Flavin reductase like domain
A0U89_RS05910	SM00947	Carbonic anhydrase
A0U89_RS05915	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A0U89_RS05935	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS05960	SM00822	A0U89_RS05960
A0U89_RS05995	SM00487	DEAD-like helicases superfamily
A0U89_RS05995	SM00490	helicase superfamily c-terminal domain
A0U89_RS06025	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS06150	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A0U89_RS06245	SM00411	bacterial (prokaryotic) histone like domain
A0U89_RS06315	SM00342	helix_turn_helix, arabinose operon control protein
A0U89_RS06340	SM00852	Probable molybdopterin binding domain
A0U89_RS06370	SM00487	DEAD-like helicases superfamily
A0U89_RS06370	SM00490	helicase superfamily c-terminal domain
A0U89_RS06430	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS06490	SM00798	AICARFT/IMPCHase bienzyme
A0U89_RS06490	SM00851	MGS-like domain
A0U89_RS06520	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS06520	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U89_RS06535	SM00116	Domain in cystathionine beta-synthase and other proteins.
A0U89_RS06535	SM01240	A0U89_RS06535
A0U89_RS06555	SM00448	cheY-homologous receiver domain
A0U89_RS06555	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS06570	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A0U89_RS06570	SM00465	GIY-YIG type nucleases (URI domain)
A0U89_RS06600	SM01192	A0U89_RS06600
A0U89_RS06600	SM01193	A0U89_RS06600
A0U89_RS06665	SM00861	Transketolase, pyrimidine binding domain
A0U89_RS06680	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U89_RS06710	SM00998	Adenylosuccinate lyase C-terminus
A0U89_RS06735	SM01211	A0U89_RS06735
A0U89_RS06765	SM01004	Delta-aminolevulinic acid dehydratase
A0U89_RS06860	SM00732	Likely ribonuclease with RNase H fold.
A0U89_RS06875	SM00845	GatB domain
A0U89_RS07050	SM00507	HNH nucleases
A0U89_RS07095	SM00530	Helix-turn-helix XRE-family like proteins 
A0U89_RS07110	SM00470	ParB-like nuclease domain
A0U89_RS07150	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07150	SM00930	A0U89_RS07150
A0U89_RS07165	SM01329	A0U89_RS07165
A0U89_RS07210	SM01001	AIR carboxylase
A0U89_RS07260	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07265	SM00448	cheY-homologous receiver domain
A0U89_RS07285	SM00387	Histidine kinase-like ATPases
A0U89_RS07290	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07295	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07305	SM00341	Helicase and RNase D C-terminal
A0U89_RS07305	SM00487	DEAD-like helicases superfamily
A0U89_RS07305	SM00490	helicase superfamily c-terminal domain
A0U89_RS07305	SM00956	A0U89_RS07305
A0U89_RS07335	SM00822	A0U89_RS07335
A0U89_RS07370	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
A0U89_RS07385	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07410	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A0U89_RS07410	SM01232	A0U89_RS07410
A0U89_RS07420	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07420	SM00760	Bacterial dnaA protein helix-turn-helix domain
A0U89_RS07425	SM00480	DNA polymerase III beta subunit
A0U89_RS07430	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07435	SM00387	Histidine kinase-like ATPases
A0U89_RS07435	SM00433	TopoisomeraseII
A0U89_RS07480	SM00100	Cyclic nucleotide-monophosphate binding domain
A0U89_RS07505	SM00763	PrkA AAA domain
A0U89_RS07510	SM00849	Metallo-beta-lactamase superfamily
A0U89_RS07535	SM00936	Penicillin-binding protein 5, C-terminal domain 
A0U89_RS07610	SM00937	A0U89_RS07610
A0U89_RS07705	SM00271	DnaJ molecular chaperone homology domain
A0U89_RS07740	SM00487	DEAD-like helicases superfamily
A0U89_RS07740	SM00490	helicase superfamily c-terminal domain
A0U89_RS07740	SM00982	A0U89_RS07740
A0U89_RS07740	SM01058	CarD-like/TRCF domain
A0U89_RS07745	SM00487	DEAD-like helicases superfamily
A0U89_RS07745	SM00490	helicase superfamily c-terminal domain
A0U89_RS07750	SM00052	Putative diguanylate phosphodiesterase
A0U89_RS07750	SM00267	diguanylate cyclase
A0U89_RS07760	SM00357	Cold shock protein domain
A0U89_RS07770	SM01130	A0U89_RS07770
A0U89_RS07795	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07805	SM00450	Rhodanese Homology Domain
A0U89_RS07820	SM00155	Phospholipase D. Active site motifs.
A0U89_RS07830	SM00434	DNA Topoisomerase IV
A0U89_RS07855	SM00481	DNA polymerase alpha chain like domain
A0U89_RS07860	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07875	SM00849	Metallo-beta-lactamase superfamily
A0U89_RS07895	SM00411	bacterial (prokaryotic) histone like domain
A0U89_RS07900	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07900	SM00464	Found in ATP-dependent protease La (LON)
A0U89_RS07905	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS07905	SM00994	ClpX C4-type zinc finger
A0U89_RS07905	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U89_RS07935	SM00487	DEAD-like helicases superfamily
A0U89_RS07935	SM00490	helicase superfamily c-terminal domain
A0U89_RS07965	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS08000	SM00838	Elongation factor G C-terminus
A0U89_RS08000	SM00889	Elongation factor G, domain IV
A0U89_RS08015	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS08040	SM00422	helix_turn_helix, mercury resistance
A0U89_RS08045	SM00411	bacterial (prokaryotic) histone like domain
A0U89_RS08075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U89_RS08075	SM00387	Histidine kinase-like ATPases
A0U89_RS08075	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS08080	SM00448	cheY-homologous receiver domain
A0U89_RS08080	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS08085	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U89_RS08120	SM00344	helix_turn_helix ASNC type
A0U89_RS08135	SM00411	bacterial (prokaryotic) histone like domain
A0U89_RS08150	SM00986	Uracil DNA glycosylase superfamily
A0U89_RS08150	SM00987	UreE urease accessory protein, C-terminal domain 
A0U89_RS08190	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A0U89_RS08295	SM00842	Cell division protein FtsA
A0U89_RS08300	SM00864	Tubulin/FtsZ family, GTPase domain
A0U89_RS08300	SM00865	Tubulin/FtsZ family, C-terminal domain
A0U89_RS08315	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS08320	SM00292	breast cancer carboxy-terminal domain
A0U89_RS08320	SM00532	Ligase N family
A0U89_RS08325	SM01091	Transporter associated domain
A0U89_RS08465	SM00100	Cyclic nucleotide-monophosphate binding domain
A0U89_RS08465	SM00419	helix_turn_helix, cAMP Regulatory protein
A0U89_RS08485	SM01329	A0U89_RS08485
A0U89_RS08520	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS08520	SM00962	SRP54-type protein, GTPase domain
A0U89_RS08520	SM00963	SRP54-type protein, helical bundle domain
A0U89_RS08545	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
A0U89_RS08570	SM01120	A0U89_RS08570
A0U89_RS08580	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS08595	SM00420	helix_turn_helix, Deoxyribose operon repressor
A0U89_RS08595	SM01134	A0U89_RS08595
A0U89_RS08620	SM00420	helix_turn_helix, Deoxyribose operon repressor
A0U89_RS08620	SM01134	A0U89_RS08620
A0U89_RS08665	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS08750	SM00530	Helix-turn-helix XRE-family like proteins 
A0U89_RS08935	SM00825	Beta-ketoacyl synthase
A0U89_RS08945	SM00822	A0U89_RS08945
A0U89_RS08950	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A0U89_RS08975	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A0U89_RS08975	SM00911	HWE histidine kinase
A0U89_RS08985	SM00886	Stress responsive A/B Barrel Domain
A0U89_RS08995	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U89_RS08995	SM00876	Biotin and Thiamin Synthesis associated domain
A0U89_RS09075	SM00873	B3/4 domain
A0U89_RS09075	SM00874	tRNA synthetase B5 domain
A0U89_RS09075	SM00896	Ferredoxin-fold anticodon binding domain
A0U89_RS09095	SM00564	beta-propeller repeat
A0U89_RS09110	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS09110	SM01086	C-terminal, D2-small domain, of ClpB protein
A0U89_RS09120	SM00387	Histidine kinase-like ATPases
A0U89_RS09120	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS09120	SM00448	cheY-homologous receiver domain
A0U89_RS09125	SM00387	Histidine kinase-like ATPases
A0U89_RS09125	SM00448	cheY-homologous receiver domain
A0U89_RS09140	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS09155	SM00563	Phosphate acyltransferases
A0U89_RS09180	SM00849	Metallo-beta-lactamase superfamily
A0U89_RS09255	SM00487	DEAD-like helicases superfamily
A0U89_RS09255	SM00490	helicase superfamily c-terminal domain
A0U89_RS09295	SM00836	DALR anticodon binding domain
A0U89_RS09295	SM01016	Arginyl tRNA synthetase N terminal dom
A0U89_RS09300	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A0U89_RS09390	SM00917	LeuA allosteric (dimerisation) domain
A0U89_RS09395	SM00646	A0U89_RS09395
A0U89_RS09405	SM00316	Ribosomal protein S1-like RNA-binding domain
A0U89_RS09405	SM00384	DNA binding domain with preference for A/T rich regions
A0U89_RS09420	SM01209	A0U89_RS09420
A0U89_RS09420	SM01210	A0U89_RS09420
A0U89_RS09460	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A0U89_RS09460	SM00474	3'-5' exonuclease
A0U89_RS09460	SM00475	5'-3' exonuclease
A0U89_RS09460	SM00482	DNA polymerase A domain
A0U89_RS09605	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U89_RS09605	SM00245	tail specific protease
A0U89_RS09620	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS09635	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS09710	SM00662	RNA polymerases D
A0U89_RS09775	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A0U89_RS09780	SM01374	A0U89_RS09780
A0U89_RS09800	SM00322	K homology RNA-binding domain
A0U89_RS09815	SM01382	A0U89_RS09815
A0U89_RS09815	SM01383	A0U89_RS09815
A0U89_RS09835	SM01403	A0U89_RS09835
A0U89_RS09855	SM00663	RNA polymerase I subunit A N-terminus
A0U89_RS09880	SM00649	Ribosomal protein L11/L12
A0U89_RS09900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U89_RS09900	SM00387	Histidine kinase-like ATPases
A0U89_RS09900	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS09905	SM00448	cheY-homologous receiver domain
A0U89_RS09905	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS09960	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS09965	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS10005	SM01043	Bacterial transcriptional activator domain
A0U89_RS10020	SM00226	Low molecular weight phosphatase family
A0U89_RS10030	SM01120	A0U89_RS10030
A0U89_RS10090	SM00387	Histidine kinase-like ATPases
A0U89_RS10090	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS10095	SM00448	cheY-homologous receiver domain
A0U89_RS10095	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS10105	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS10270	SM00271	DnaJ molecular chaperone homology domain
A0U89_RS10310	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS10360	SM00671	Sel1-like repeats.
A0U89_RS10370	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS10400	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A0U89_RS10435	SM00788	Adenylosuccinate synthetase
A0U89_RS10460	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A0U89_RS10490	SM00881	CoA binding domain
A0U89_RS10500	SM00564	beta-propeller repeat
A0U89_RS10545	SM00822	A0U89_RS10545
A0U89_RS10570	SM00880	A0U89_RS10570
A0U89_RS10570	SM01118	A0U89_RS10570
A0U89_RS10595	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS10640	SM00271	DnaJ molecular chaperone homology domain
A0U89_RS10710	SM00822	A0U89_RS10710
A0U89_RS10735	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS10745	SM00849	Metallo-beta-lactamase superfamily
A0U89_RS10805	SM00479	A0U89_RS10805
A0U89_RS10815	SM00347	helix_turn_helix multiple antibiotic resistance protein
A0U89_RS10830	SM00905	Dihydroneopterin aldolase
A0U89_RS10850	SM00267	diguanylate cyclase
A0U89_RS10925	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS10925	SM00448	cheY-homologous receiver domain
A0U89_RS10930	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U89_RS10930	SM00387	Histidine kinase-like ATPases
A0U89_RS10930	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS10935	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS10970	SM00320	WD40 repeats
A0U89_RS10975	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A0U89_RS11060	SM00450	Rhodanese Homology Domain
A0U89_RS11070	SM00448	cheY-homologous receiver domain
A0U89_RS11070	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS11075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U89_RS11075	SM00387	Histidine kinase-like ATPases
A0U89_RS11075	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS11110	SM00028	Tetratricopeptide repeats
A0U89_RS11115	SM00986	Uracil DNA glycosylase superfamily
A0U89_RS11115	SM00987	UreE urease accessory protein, C-terminal domain 
A0U89_RS11125	SM01091	Transporter associated domain
A0U89_RS11145	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U89_RS11215	SM01005	Alanine racemase, C-terminal domain
A0U89_RS11255	SM00341	Helicase and RNase D C-terminal
A0U89_RS11255	SM00474	3'-5' exonuclease
A0U89_RS11275	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS11315	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A0U89_RS11315	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A0U89_RS11385	SM00464	Found in ATP-dependent protease La (LON)
A0U89_RS11405	SM00530	Helix-turn-helix XRE-family like proteins 
A0U89_RS11445	SM00932	Scaffold protein Nfu/NifU N terminal
A0U89_RS11450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U89_RS11450	SM00387	Histidine kinase-like ATPases
A0U89_RS11450	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS11455	SM00448	cheY-homologous receiver domain
A0U89_RS11455	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS11485	SM00937	A0U89_RS11485
A0U89_RS11550	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS11555	SM00478	endonuclease III
A0U89_RS11605	SM01207	A0U89_RS11605
A0U89_RS11615	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A0U89_RS11615	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A0U89_RS11615	SM00493	A0U89_RS11615
A0U89_RS11620	SM00245	tail specific protease
A0U89_RS11655	SM00387	Histidine kinase-like ATPases
A0U89_RS11655	SM00433	TopoisomeraseII
A0U89_RS11675	SM00853	MutL C terminal dimerisation domain
A0U89_RS11675	SM01340	A0U89_RS11675
A0U89_RS11700	SM00904	Riboflavin kinase
A0U89_RS11715	SM01007	Class II Aldolase and Adducin N-terminal domain
A0U89_RS11900	SM00530	Helix-turn-helix XRE-family like proteins 
A0U89_RS11935	SM00434	DNA Topoisomerase IV
A0U89_RS11960	SM00487	DEAD-like helicases superfamily
A0U89_RS11960	SM00490	helicase superfamily c-terminal domain
A0U89_RS11960	SM00847	Helicase associated domain (HA2)  Add an annotation
A0U89_RS11965	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U89_RS11970	SM00448	cheY-homologous receiver domain
A0U89_RS11970	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS11975	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A0U89_RS11975	SM00387	Histidine kinase-like ATPases
A0U89_RS11975	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS12000	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A0U89_RS12020	SM00028	Tetratricopeptide repeats
A0U89_RS12040	SM00564	beta-propeller repeat
A0U89_RS12315	SM00849	Metallo-beta-lactamase superfamily
A0U89_RS12370	SM00855	Phosphoglycerate mutase family
A0U89_RS12375	SM01400	A0U89_RS12375
A0U89_RS12425	SM00411	bacterial (prokaryotic) histone like domain
A0U89_RS12510	SM00858	A0U89_RS12510
A0U89_RS12530	SM00478	endonuclease III
A0U89_RS12595	SM00245	tail specific protease
A0U89_RS12610	SM00450	Rhodanese Homology Domain
A0U89_RS12625	SM00996	S-adenosyl-L-homocysteine hydrolase
A0U89_RS12625	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A0U89_RS12645	SM00671	Sel1-like repeats.
A0U89_RS12665	SM00344	helix_turn_helix ASNC type
A0U89_RS12675	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A0U89_RS12725	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A0U89_RS12740	SM00346	helix_turn_helix isocitrate lyase regulation
A0U89_RS12790	SM01230	A0U89_RS12790
A0U89_RS12840	SM00448	cheY-homologous receiver domain
A0U89_RS12860	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A0U89_RS12860	SM00895	A0U89_RS12860
A0U89_RS12935	SM00867	YceI-like domain 
A0U89_RS12950	SM00829	Enoylreductase
A0U89_RS12955	SM00478	endonuclease III
A0U89_RS12965	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A0U89_RS12965	SM00091	PAS domain
A0U89_RS12965	SM00387	Histidine kinase-like ATPases
A0U89_RS12965	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS12965	SM00448	cheY-homologous receiver domain
A0U89_RS13020	SM00965	Secretin and TonB N terminus short domain
A0U89_RS13075	SM00028	Tetratricopeptide repeats
A0U89_RS13185	SM00729	Elongator protein 3, MiaB family, Radical SAM
A0U89_RS13245	SM00893	Electron transfer flavoprotein domain
A0U89_RS13250	SM00893	Electron transfer flavoprotein domain
A0U89_RS13275	SM00271	DnaJ molecular chaperone homology domain
A0U89_RS13290	SM00448	cheY-homologous receiver domain
A0U89_RS13290	SM00862	Transcriptional regulatory protein, C terminal
A0U89_RS13295	SM00387	Histidine kinase-like ATPases
A0U89_RS13295	SM00388	His Kinase A (phosphoacceptor) domain
A0U89_RS13315	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS13380	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U89_RS13430	SM00028	Tetratricopeptide repeats
A0U89_RS13440	SM00487	DEAD-like helicases superfamily
A0U89_RS13465	SM00938	Nitrogen regulatory protein P-II
A0U89_RS13475	SM00971	Serine acetyltransferase, N-terminal
A0U89_RS13480	SM00829	Enoylreductase
A0U89_RS13570	SM00563	Phosphate acyltransferases
A0U89_RS13600	SM00357	Cold shock protein domain
A0U89_RS13600	SM00382	ATPases associated with a variety of cellular activities
A0U89_RS13600	SM00959	Rho termination factor, N-terminal domain
A0U89_RS13615	SM01228	A0U89_RS13615
A0U89_RS13630	SM00470	ParB-like nuclease domain
A0U89_RS13640	SM00855	Phosphoglycerate mutase family
A0U89_RS13670	SM00843	A0U89_RS13670
A0U89_RS15075	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A0U89_RS15220	SM00861	Transketolase, pyrimidine binding domain
A0U89_RS15985	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A0U89_RS16335	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A0U89_RS16335	SM00091	PAS domain
