locus-tag	class	description
DQQ11_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DQQ11_RS00010	COG0592	DNA-directed DNA polymerase activity
DQQ11_RS00015	COG2501	S4 domain
DQQ11_RS00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DQQ11_RS00025	COG0187	DNA topoisomerase II activity
DQQ11_RS00035	COG0360	Binds together with S18 to 16S ribosomal RNA
DQQ11_RS00040	COG0629	single-stranded DNA binding
DQQ11_RS00045	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DQQ11_RS00055	COG0359	binds to the 23S rRNA
DQQ11_RS00060	COG0305	Participates in initiation and elongation during chromosome replication
DQQ11_RS00065	COG2814	Major facilitator Superfamily
DQQ11_RS00070	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DQQ11_RS00075	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
DQQ11_RS00080	COG4166	transmembrane transport
DQQ11_RS00085	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DQQ11_RS00090	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
DQQ11_RS00095	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
DQQ11_RS00100	COG0297	glycogen (starch) synthase activity
DQQ11_RS00105	COG0058	SHG alpha-glucan phosphorylase activity
DQQ11_RS00110	COG3103	Sh3 type 3 domain protein
DQQ11_RS00110	COG0366	Alpha amylase catalytic
DQQ11_RS00120	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DQQ11_RS00125	COG1554	hydrolase, family 65, central catalytic
DQQ11_RS00135	COG1278	Cold shock
DQQ11_RS00150	COG0745	RESPONSE REGULATOR receiver
DQQ11_RS00155	COG5002	protein histidine kinase activity
DQQ11_RS00165	COG4853	Protein conserved in bacteria
DQQ11_RS00170	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DQQ11_RS00175	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DQQ11_RS00180	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
DQQ11_RS00210	COG1573	uracil-dna glycosylase
DQQ11_RS00230	COG0431	NADPH-dependent FMN reductase
DQQ11_RS00230	COG1053	succinate dehydrogenase
DQQ11_RS00230	COG3976	FMN-binding domain protein
DQQ11_RS00235	COG0471	metal ion transport
DQQ11_RS00250	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DQQ11_RS00255	COG1028	Short-chain dehydrogenase reductase Sdr
DQQ11_RS00265	COG0778	Nitroreductase
DQQ11_RS00270	COG2508	Transcriptional regulator
DQQ11_RS00280	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DQQ11_RS00285	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
DQQ11_RS00295	COG2365	Tyrosine phosphatase family
DQQ11_RS00300	COG2368	4-hydroxyphenylacetate
DQQ11_RS00320	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DQQ11_RS00355	COG0604	alcohol dehydrogenase
DQQ11_RS00380	COG2267	carboxylic ester hydrolase activity
DQQ11_RS00385	COG3022	response to hydroperoxide
DQQ11_RS00395	COG4166	transmembrane transport
DQQ11_RS00420	COG1122	ATPase activity
DQQ11_RS00425	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
DQQ11_RS00430	COG0310	cobalt ion transport
DQQ11_RS00435	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DQQ11_RS00440	COG3875	lactate racemase activity
DQQ11_RS00445	COG1691	(AIR) carboxylase
DQQ11_RS00450	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
DQQ11_RS00455	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
DQQ11_RS00460	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DQQ11_RS00465	COG1606	tRNA processing
DQQ11_RS00475	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
DQQ11_RS00480	COG0351	phosphomethylpyrimidine kinase
DQQ11_RS00485	COG0352	thiamine-phosphate diphosphorylase activity
DQQ11_RS00495	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DQQ11_RS00510	COG1113	amino acid transport
DQQ11_RS00520	COG2267	carboxylic ester hydrolase activity
DQQ11_RS00525	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
DQQ11_RS00535	COG1983	PspC domain protein
DQQ11_RS00575	COG2807	transmembrane transport
DQQ11_RS00580	COG0656	L-ascorbic acid biosynthetic process
DQQ11_RS00585	COG0667	Aldo Keto reductase
DQQ11_RS00615	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
DQQ11_RS00620	COG1122	ATPase activity
DQQ11_RS00625	COG4720	Psort location CytoplasmicMembrane, score
DQQ11_RS00635	COG2188	Transcriptional regulator
DQQ11_RS00660	COG1028	Short-chain dehydrogenase reductase Sdr
DQQ11_RS00665	COG1131	(ABC) transporter
DQQ11_RS00680	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DQQ11_RS00685	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
DQQ11_RS00690	COG1309	transcriptional regulator
DQQ11_RS00695	COG2376	Dihydroxyacetone kinase
DQQ11_RS00700	COG2376	Dihydroxyacetone kinase
DQQ11_RS00705	COG1461	Dihydroxyacetone kinase
DQQ11_RS00710	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
DQQ11_RS00715	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DQQ11_RS00720	COG1609	Transcriptional regulator
DQQ11_RS00725	COG1609	Transcriptional regulator
DQQ11_RS00730	COG0366	Alpha amylase catalytic
DQQ11_RS00735	COG2182	Extracellular solute-binding protein
DQQ11_RS00740	COG1175	transmembrane transport
DQQ11_RS00745	COG3833	ABC-type maltose transport systems, permease component
DQQ11_RS00755	COG0366	Alpha amylase catalytic
DQQ11_RS00760	COG3842	ATPase activity
DQQ11_RS00810	COG1757	Na H antiporter
DQQ11_RS00835	COG4166	transmembrane transport
DQQ11_RS00840	COG4166	transmembrane transport
DQQ11_RS00850	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DQQ11_RS00855	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
DQQ11_RS00860	COG0406	alpha-ribazole phosphatase activity
DQQ11_RS00865	COG0667	Aldo Keto reductase
DQQ11_RS00895	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DQQ11_RS00900	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DQQ11_RS00905	COG0488	(ABC) transporter
DQQ11_RS00915	COG4172	Belongs to the ABC transporter superfamily
DQQ11_RS00925	COG0386	Belongs to the glutathione peroxidase family
DQQ11_RS00935	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DQQ11_RS00950	COG0363	glucosamine-6-phosphate deaminase activity
DQQ11_RS00960	COG2213	PTS system mannitol-specific
DQQ11_RS00970	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DQQ11_RS00975	COG0246	Mannitol dehydrogenase
DQQ11_RS00985	COG3118	belongs to the thioredoxin family
DQQ11_RS01015	COG0431	NADPH-dependent FMN reductase
DQQ11_RS01020	COG2188	Transcriptional regulator
DQQ11_RS01025	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS01040	COG3964	amidohydrolase
DQQ11_RS01060	COG1045	serine acetyltransferase
DQQ11_RS01065	COG0626	cystathionine gamma-synthase activity
DQQ11_RS01070	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DQQ11_RS01100	COG2188	Transcriptional regulator
DQQ11_RS01105	COG0366	Alpha amylase catalytic
DQQ11_RS01110	COG2190	(PTS) system
DQQ11_RS01110	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS01110	COG1263	PTS System
DQQ11_RS01115	COG2190	(PTS) system
DQQ11_RS01115	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS01115	COG1263	PTS System
DQQ11_RS01125	COG0163	prenyltransferase activity
DQQ11_RS01135	COG1959	2 iron, 2 sulfur cluster binding
DQQ11_RS01140	COG1309	transcriptional regulator
DQQ11_RS01145	COG1914	H( )-stimulated, divalent metal cation uptake system
DQQ11_RS01165	COG2814	Major facilitator Superfamily
DQQ11_RS01175	COG5002	protein histidine kinase activity
DQQ11_RS01180	COG0745	RESPONSE REGULATOR receiver
DQQ11_RS01190	COG1737	Transcriptional regulator
DQQ11_RS01195	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS01210	COG1316	TRANSCRIPTIONal
DQQ11_RS01215	COG0277	FAD linked oxidase domain protein
DQQ11_RS01225	COG2357	RelA SpoT domain protein
DQQ11_RS01235	COG2409	Drug exporters of the RND superfamily
DQQ11_RS01235	COG1033	growth of symbiont in host cell
DQQ11_RS01240	COG2818	Glycosylase
DQQ11_RS01250	COG0577	efflux transmembrane transporter activity
DQQ11_RS01255	COG1136	(ABC) transporter
DQQ11_RS01270	COG0741	lytic transglycosylase activity
DQQ11_RS01275	COG1388	LysM domain
DQQ11_RS01275	COG3942	CHAP domain
DQQ11_RS01305	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DQQ11_RS01315	COG1846	Transcriptional regulator
DQQ11_RS01320	COG1252	NADH dehydrogenase
DQQ11_RS01360	COG3842	ATPase activity
DQQ11_RS01390	COG1725	Transcriptional regulator
DQQ11_RS01395	COG1131	(ABC) transporter
DQQ11_RS01405	COG1012	belongs to the aldehyde dehydrogenase family
DQQ11_RS01405	COG1454	alcohol dehydrogenase
DQQ11_RS01445	COG1268	BioY protein
DQQ11_RS01460	COG0436	Aminotransferase
DQQ11_RS01470	COG1682	transport, permease protein
DQQ11_RS01475	COG1134	teichoic acid transport
DQQ11_RS01490	COG2814	Major facilitator Superfamily
DQQ11_RS01495	COG0004	ammonium transporteR
DQQ11_RS01515	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DQQ11_RS01525	COG3759	membrane
DQQ11_RS01530	COG1881	PFAM PEBP family protein
DQQ11_RS01560	COG0300	oxidoreductase activity
DQQ11_RS01580	COG1125	glycine betaine transport
DQQ11_RS01590	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DQQ11_RS01600	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DQQ11_RS01670	COG0110	maltose O-acetyltransferase activity
DQQ11_RS01680	COG0561	phosphatase activity
DQQ11_RS01690	COG0561	phosphatase activity
DQQ11_RS01695	COG1114	Component of the transport system for branched-chain amino acids
DQQ11_RS01740	COG0463	Glycosyl transferase, family 2
DQQ11_RS01765	COG3279	Response regulator of the LytR AlgR family
DQQ11_RS01790	COG2274	protein secretion by the type I secretion system
DQQ11_RS01825	COG3973	AAA domain
DQQ11_RS01830	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DQQ11_RS01835	COG0180	Tryptophanyl-tRNA synthetase
DQQ11_RS01840	COG2188	Transcriptional regulator
DQQ11_RS01845	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS01860	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS01865	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS01870	COG1940	carbohydrate kinase activity
DQQ11_RS01880	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DQQ11_RS01895	COG0248	Ppx GppA phosphatase
DQQ11_RS01910	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DQQ11_RS01915	COG1801	Protein of unknown function DUF72
DQQ11_RS01925	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DQQ11_RS01925	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DQQ11_RS01930	COG2814	Major facilitator Superfamily
DQQ11_RS01935	COG0084	hydrolase, TatD family'
DQQ11_RS01940	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
DQQ11_RS01945	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DQQ11_RS01950	COG4466	Protein conserved in bacteria
DQQ11_RS01955	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DQQ11_RS01965	COG1073	alpha beta
DQQ11_RS01970	COG1121	(ABC) transporter
DQQ11_RS01975	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DQQ11_RS01975	COG1321	iron dependent repressor
DQQ11_RS01995	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DQQ11_RS02000	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DQQ11_RS02010	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DQQ11_RS02030	COG1078	dGTPase activity
DQQ11_RS02035	COG0095	Lipoate-protein ligase
DQQ11_RS02045	COG3343	RNA polymerase activity
DQQ11_RS02050	COG0504	CTP synthase activity
DQQ11_RS02055	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DQQ11_RS02060	COG0814	amino acid
DQQ11_RS02070	COG1760	l-serine dehydratase
DQQ11_RS02075	COG1760	l-serine dehydratase
DQQ11_RS02090	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DQQ11_RS02095	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DQQ11_RS02100	COG0254	rRNA binding
DQQ11_RS02110	COG3764	Sortase (surface protein transpeptidase)
DQQ11_RS02115	COG1704	LemA family
DQQ11_RS02120	COG0501	Belongs to the peptidase M48B family
DQQ11_RS02130	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DQQ11_RS02150	COG0736	holo-[acyl-carrier-protein] synthase activity
DQQ11_RS02155	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DQQ11_RS02160	COG2337	Toxic component of a toxin-antitoxin (TA) module
DQQ11_RS02165	COG3158	transport of potassium into the cell
DQQ11_RS02185	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DQQ11_RS02190	COG0505	Belongs to the CarA family
DQQ11_RS02195	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DQQ11_RS02200	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DQQ11_RS02205	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DQQ11_RS02210	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DQQ11_RS02215	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DQQ11_RS02230	COG2267	carboxylic ester hydrolase activity
DQQ11_RS02250	COG0039	L-malate dehydrogenase activity
DQQ11_RS02255	COG0193	aminoacyl-tRNA hydrolase activity
DQQ11_RS02260	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DQQ11_RS02265	COG2244	polysaccharide biosynthetic process
DQQ11_RS02270	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DQQ11_RS02280	COG1098	S1 RNA binding domain
DQQ11_RS02285	COG0037	tRNA processing
DQQ11_RS02300	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DQQ11_RS02305	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DQQ11_RS02310	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DQQ11_RS02350	COG3104	oligopeptide transport
DQQ11_RS02400	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DQQ11_RS02410	COG2188	Transcriptional regulator
DQQ11_RS02420	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DQQ11_RS02425	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DQQ11_RS02440	COG2183	response to ionizing radiation
DQQ11_RS02445	COG3091	SprT-like family
DQQ11_RS02450	COG0460	homoserine dehydrogenase
DQQ11_RS02455	COG0083	homoserine kinase activity
DQQ11_RS02475	COG3409	Peptidoglycan-binding domain 1 protein
DQQ11_RS02500	COG3715	PTS system
DQQ11_RS02505	COG3716	PTS system mannose fructose sorbose family IID component
DQQ11_RS02515	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
DQQ11_RS02515	COG3933	PFAM sigma-54 factor interaction domain-containing protein
DQQ11_RS02520	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DQQ11_RS02520	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS02525	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS02525	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DQQ11_RS02530	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DQQ11_RS02540	COG0439	Biotin carboxylase
DQQ11_RS02550	COG0825	malonyl-CoA metabolic process
DQQ11_RS02555	COG1316	TRANSCRIPTIONal
DQQ11_RS02565	COG0697	spore germination
DQQ11_RS02570	COG0588	phosphoglycerate mutase activity
DQQ11_RS02585	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DQQ11_RS02595	COG0756	dUTP diphosphatase activity
DQQ11_RS02620	COG4956	integral membrane protein (PIN domain superfamily)
DQQ11_RS02625	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DQQ11_RS02630	COG0215	cysteine-tRNA ligase activity
DQQ11_RS02635	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
DQQ11_RS02640	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DQQ11_RS02655	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DQQ11_RS02665	COG0250	Participates in transcription elongation, termination and antitermination
DQQ11_RS02675	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DQQ11_RS02680	COG0081	regulation of translation
DQQ11_RS02685	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DQQ11_RS02690	COG0222	ribosome binding
DQQ11_RS02710	COG1611	Belongs to the LOG family
DQQ11_RS02720	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DQQ11_RS02725	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DQQ11_RS02730	COG2813	Specifically methylates the guanine in position
DQQ11_RS02745	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DQQ11_RS02750	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DQQ11_RS02755	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DQQ11_RS02765	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DQQ11_RS02770	COG3870	Protein conserved in bacteria
DQQ11_RS02775	COG0470	DNA polymerase III
DQQ11_RS02780	COG4467	Involved in initiation control of chromosome replication
DQQ11_RS02795	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DQQ11_RS02800	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DQQ11_RS02805	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DQQ11_RS02810	COG3639	organic phosphonate transmembrane transporter activity
DQQ11_RS02820	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
DQQ11_RS02830	COG1214	PFAM Peptidase M22, glycoprotease
DQQ11_RS02835	COG0456	acetyltransferase
DQQ11_RS02840	COG0456	acetyltransferase
DQQ11_RS02845	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DQQ11_RS02855	COG0488	(ABC) transporter
DQQ11_RS02860	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
DQQ11_RS02870	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DQQ11_RS02875	COG0459	protein refolding
DQQ11_RS02880	COG0531	amino acid
DQQ11_RS02885	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DQQ11_RS02890	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DQQ11_RS02895	COG1739	Uncharacterized protein family UPF0029
DQQ11_RS02900	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
DQQ11_RS02915	COG0653	protein targeting
DQQ11_RS02930	COG0745	RESPONSE REGULATOR receiver
DQQ11_RS02935	COG5002	protein histidine kinase activity
DQQ11_RS02940	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DQQ11_RS02945	COG0573	inorganic phosphate transmembrane transporter activity
DQQ11_RS02950	COG0581	inorganic phosphate transmembrane transporter activity
DQQ11_RS02955	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DQQ11_RS02960	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DQQ11_RS02965	COG0704	Plays a role in the regulation of phosphate uptake
DQQ11_RS02970	COG1983	PspC domain protein
DQQ11_RS02975	COG1950	PFAM Membrane protein of
DQQ11_RS02980	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
DQQ11_RS02985	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DQQ11_RS02990	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DQQ11_RS02995	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DQQ11_RS03005	COG0446	pyridine nucleotide-disulphide oxidoreductase
DQQ11_RS03025	COG1215	transferase activity, transferring glycosyl groups
DQQ11_RS03040	COG0492	ferredoxin-NADP+ reductase activity
DQQ11_RS03045	COG2323	membrane
DQQ11_RS03055	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DQQ11_RS03065	COG0446	pyridine nucleotide-disulphide oxidoreductase
DQQ11_RS03075	COG2814	Major facilitator Superfamily
DQQ11_RS03085	COG0556	nucleotide-excision repair
DQQ11_RS03090	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DQQ11_RS03095	COG1854	S-ribosylhomocysteine lyase activity
DQQ11_RS03100	COG0137	argininosuccinate synthase activity
DQQ11_RS03105	COG0165	Argininosuccinate lyase
DQQ11_RS03115	COG1660	Displays ATPase and GTPase activities
DQQ11_RS03125	COG1481	regulation of sporulation
DQQ11_RS03135	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DQQ11_RS03140	COG0740	serine-type endopeptidase activity
DQQ11_RS03150	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DQQ11_RS03155	COG2390	Transcriptional regulator
DQQ11_RS03165	COG0126	phosphoglycerate kinase activity
DQQ11_RS03170	COG0149	triose-phosphate isomerase activity
DQQ11_RS03175	COG0148	phosphopyruvate hydratase activity
DQQ11_RS03190	COG0038	chloride channel
DQQ11_RS03195	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DQQ11_RS03205	COG0557	exoribonuclease II activity
DQQ11_RS03210	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DQQ11_RS03220	COG0765	amino acid transport
DQQ11_RS03225	COG1126	abc transporter atp-binding protein
DQQ11_RS03235	COG0561	phosphatase activity
DQQ11_RS03240	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
DQQ11_RS03245	COG0280	phosphate acetyltransferase
DQQ11_RS03250	COG0802	atpase or kinase
DQQ11_RS03265	COG0708	Exodeoxyribonuclease III
DQQ11_RS03275	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DQQ11_RS03280	COG0025	NhaP-type Na H and K H
DQQ11_RS03305	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DQQ11_RS03310	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DQQ11_RS03320	COG0561	phosphatase activity
DQQ11_RS03330	COG2017	converts alpha-aldose to the beta-anomer
DQQ11_RS03350	COG0778	Nitroreductase
DQQ11_RS03365	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DQQ11_RS03380	COG1393	Belongs to the ArsC family
DQQ11_RS03400	COG0248	Ppx GppA phosphatase
DQQ11_RS03405	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DQQ11_RS03415	COG3475	LICD family
DQQ11_RS03430	COG2252	PERMEase
DQQ11_RS03435	COG0028	Belongs to the TPP enzyme family
DQQ11_RS03445	COG0028	Belongs to the TPP enzyme family
DQQ11_RS03450	COG2267	carboxylic ester hydrolase activity
DQQ11_RS03460	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DQQ11_RS03460	COG2755	lipolytic protein G-D-S-L family
DQQ11_RS03465	COG2936	dipeptidyl-peptidase activity
DQQ11_RS03480	COG0531	amino acid
DQQ11_RS03505	COG0194	GDP metabolic process
DQQ11_RS03510	COG0735	belongs to the Fur family
DQQ11_RS03525	COG0546	phosphoglycolate phosphatase activity
DQQ11_RS03530	COG0436	Aminotransferase
DQQ11_RS03535	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DQQ11_RS03555	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DQQ11_RS03560	COG0765	amino acid transport
DQQ11_RS03565	COG0765	amino acid transport
DQQ11_RS03570	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS03570	COG1263	PTS System
DQQ11_RS03570	COG2190	(PTS) system
DQQ11_RS03580	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS03580	COG1263	PTS System
DQQ11_RS03585	COG3394	polysaccharide catabolic process
DQQ11_RS03590	COG0531	amino acid
DQQ11_RS03600	COG1846	Transcriptional regulator
DQQ11_RS03630	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DQQ11_RS03640	COG2076	Multidrug Resistance protein
DQQ11_RS03655	COG0588	phosphoglycerate mutase activity
DQQ11_RS03660	COG0475	glutathione-regulated potassium exporter activity
DQQ11_RS03660	COG0569	domain protein
DQQ11_RS03665	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
DQQ11_RS03665	COG0456	acetyltransferase
DQQ11_RS03670	COG3711	transcriptional antiterminator
DQQ11_RS03675	COG1263	PTS System
DQQ11_RS03675	COG2190	(PTS) system
DQQ11_RS03675	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS03680	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS03685	COG0586	Pfam SNARE associated Golgi protein
DQQ11_RS03690	COG3973	AAA domain
DQQ11_RS03695	COG2070	2-Nitropropane dioxygenase
DQQ11_RS03700	COG1072	(Pantothenic acid kinase))
DQQ11_RS03705	COG0519	Catalyzes the synthesis of GMP from XMP
DQQ11_RS03705	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DQQ11_RS03715	COG4974	Belongs to the 'phage' integrase family
DQQ11_RS03770	COG1396	sequence-specific DNA binding
DQQ11_RS03780	COG1266	CAAX protease self-immunity
DQQ11_RS03785	COG1733	regulation of RNA biosynthetic process
DQQ11_RS03790	COG2814	Major facilitator Superfamily
DQQ11_RS03835	COG2755	lipolytic protein G-D-S-L family
DQQ11_RS03835	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DQQ11_RS03840	COG2261	transglycosylase associated protein
DQQ11_RS03855	COG1302	Protein conserved in bacteria
DQQ11_RS03885	COG0308	aminopeptidase N
DQQ11_RS03890	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
DQQ11_RS03945	COG0572	uridine kinase
DQQ11_RS03960	COG0583	DNA-binding transcription factor activity
DQQ11_RS03965	COG1053	succinate dehydrogenase
DQQ11_RS03975	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DQQ11_RS03980	COG0017	Asparaginyl-tRNA synthetase
DQQ11_RS03985	COG2502	aspartate--ammonia ligase
DQQ11_RS03990	COG4690	dipeptidase activity
DQQ11_RS04010	COG0514	ATP-dependent DNA helicase (RecQ)
DQQ11_RS04015	COG0564	pseudouridine synthase activity
DQQ11_RS04020	COG0640	Transcriptional regulator
DQQ11_RS04070	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DQQ11_RS04075	COG0527	aspartate kinase activity
DQQ11_RS04080	COG0367	asparagine synthase
DQQ11_RS04130	COG2814	Major facilitator Superfamily
DQQ11_RS04150	COG1278	Cold shock
DQQ11_RS04155	COG2966	Psort location CytoplasmicMembrane, score
DQQ11_RS04165	COG1316	TRANSCRIPTIONal
DQQ11_RS04185	COG1959	2 iron, 2 sulfur cluster binding
DQQ11_RS04190	COG0028	Belongs to the TPP enzyme family
DQQ11_RS04195	COG0833	amino acid
DQQ11_RS04205	COG1428	Deoxynucleoside kinase
DQQ11_RS04210	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DQQ11_RS04250	COG4463	regulation of RNA biosynthetic process
DQQ11_RS04255	COG0542	response to heat
DQQ11_RS04265	COG0085	RNA polymerase activity
DQQ11_RS04270	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DQQ11_RS04275	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
DQQ11_RS04280	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DQQ11_RS04285	COG0049	tRNA binding
DQQ11_RS04290	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DQQ11_RS04295	COG0051	transcription antitermination factor activity, RNA binding
DQQ11_RS04300	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DQQ11_RS04305	COG0088	Forms part of the polypeptide exit tunnel
DQQ11_RS04310	COG0089	rRNA binding
DQQ11_RS04315	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DQQ11_RS04320	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DQQ11_RS04325	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DQQ11_RS04330	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DQQ11_RS04335	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DQQ11_RS04340	COG0255	Belongs to the universal ribosomal protein uL29 family
DQQ11_RS04345	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DQQ11_RS04350	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DQQ11_RS04355	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DQQ11_RS04360	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DQQ11_RS04365	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DQQ11_RS04370	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DQQ11_RS04375	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DQQ11_RS04380	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DQQ11_RS04385	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DQQ11_RS04390	COG1841	ribosomal large subunit assembly
DQQ11_RS04395	COG0200	Binds to the 23S rRNA
DQQ11_RS04405	COG0563	adenylate kinase activity
DQQ11_RS04410	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DQQ11_RS04415	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DQQ11_RS04420	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DQQ11_RS04425	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DQQ11_RS04430	COG0202	RNA polymerase activity
DQQ11_RS04435	COG0203	ribosomal protein L17
DQQ11_RS04460	COG4939	FMN-binding domain protein
DQQ11_RS04470	COG1122	ATPase activity
DQQ11_RS04475	COG1122	ATPase activity
DQQ11_RS04485	COG0101	tRNA pseudouridine synthase activity
DQQ11_RS04490	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DQQ11_RS04495	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DQQ11_RS04515	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DQQ11_RS04520	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DQQ11_RS04525	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
DQQ11_RS04530	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DQQ11_RS04535	COG0471	metal ion transport
DQQ11_RS04540	COG2151	metal-sulfur cluster biosynthetic enzyme
DQQ11_RS04545	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DQQ11_RS04555	COG4977	sequence-specific DNA binding
DQQ11_RS04555	COG1917	Cupin 2, conserved barrel domain protein
DQQ11_RS04560	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
DQQ11_RS04565	COG1121	(ABC) transporter
DQQ11_RS04570	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DQQ11_RS04575	COG0803	Belongs to the bacterial solute-binding protein 9 family
DQQ11_RS04585	COG0039	L-malate dehydrogenase activity
DQQ11_RS04590	COG0471	metal ion transport
DQQ11_RS04610	COG3052	prosthetic group binding
DQQ11_RS04630	COG0114	fumarate hydratase activity
DQQ11_RS04635	COG1053	succinate dehydrogenase
DQQ11_RS04645	COG0583	DNA-binding transcription factor activity
DQQ11_RS04655	COG0583	DNA-binding transcription factor activity
DQQ11_RS04660	COG0281	malic enzyme
DQQ11_RS04670	COG0531	amino acid
DQQ11_RS04675	COG4684	Psort location CytoplasmicMembrane, score
DQQ11_RS04690	COG1271	oxidase subunit
DQQ11_RS04695	COG1294	oxidase, subunit
DQQ11_RS04700	COG4988	ABC transporter
DQQ11_RS04705	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
DQQ11_RS04720	COG0142	geranyltranstransferase activity
DQQ11_RS04735	COG1705	Flagellar rod assembly protein muramidase FlgJ
DQQ11_RS04740	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DQQ11_RS04745	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
DQQ11_RS04750	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DQQ11_RS04760	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DQQ11_RS04765	COG4851	CamS sex pheromone cAM373 precursor
DQQ11_RS04770	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DQQ11_RS04775	COG0154	amidase activity
DQQ11_RS04780	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DQQ11_RS04785	COG1597	lipid kinase activity
DQQ11_RS04790	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DQQ11_RS04805	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS04815	COG1737	Transcriptional regulator
DQQ11_RS04830	COG1278	Cold shock
DQQ11_RS04835	COG0673	inositol 2-dehydrogenase activity
DQQ11_RS04840	COG0513	Belongs to the DEAD box helicase family
DQQ11_RS04855	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS04880	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DQQ11_RS04890	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DQQ11_RS04900	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DQQ11_RS04905	COG0562	UDP-galactopyranose mutase
DQQ11_RS04950	COG2244	polysaccharide biosynthetic process
DQQ11_RS04955	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
DQQ11_RS04965	COG1088	dTDP-glucose 4,6-dehydratase activity
DQQ11_RS04970	COG0582	viral genome integration into host DNA
DQQ11_RS04980	COG0489	protein tyrosine kinase activity
DQQ11_RS04985	COG4464	protein tyrosine phosphatase activity
DQQ11_RS04995	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DQQ11_RS05005	COG0438	transferase activity, transferring glycosyl groups
DQQ11_RS05020	COG5039	Polysaccharide pyruvyl transferase
DQQ11_RS05120	COG0562	UDP-galactopyranose mutase
DQQ11_RS05155	COG2207	Transcriptional regulator
DQQ11_RS05155	COG1609	Transcriptional regulator
DQQ11_RS05175	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DQQ11_RS05210	COG2137	regulation of response to DNA damage stimulus
DQQ11_RS05215	COG3557	Belongs to the UPF0374 family
DQQ11_RS05235	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DQQ11_RS05245	COG0628	permease
DQQ11_RS05250	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
DQQ11_RS05255	COG2610	gluconate transmembrane transporter activity
DQQ11_RS05260	COG1070	Carbohydrate kinase
DQQ11_RS05265	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
DQQ11_RS05270	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DQQ11_RS05275	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DQQ11_RS05305	COG4166	transmembrane transport
DQQ11_RS05310	COG0601	transmembrane transport
DQQ11_RS05315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DQQ11_RS05320	COG0444	Belongs to the ABC transporter superfamily
DQQ11_RS05325	COG4608	Belongs to the ABC transporter superfamily
DQQ11_RS05335	COG0582	viral genome integration into host DNA
DQQ11_RS05340	COG0542	response to heat
DQQ11_RS05360	COG0438	transferase activity, transferring glycosyl groups
DQQ11_RS05365	COG0438	transferase activity, transferring glycosyl groups
DQQ11_RS05375	COG1686	Belongs to the peptidase S11 family
DQQ11_RS05380	COG0436	Aminotransferase
DQQ11_RS05385	COG4703	Protein of unknown function (DUF1797)
DQQ11_RS05390	COG1368	sulfuric ester hydrolase activity
DQQ11_RS05480	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DQQ11_RS05500	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DQQ11_RS05515	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
DQQ11_RS05520	COG0833	amino acid
DQQ11_RS05525	COG2040	homocysteine
DQQ11_RS05530	COG0438	transferase activity, transferring glycosyl groups
DQQ11_RS05540	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DQQ11_RS05545	COG0477	Major facilitator Superfamily
DQQ11_RS05560	COG0438	transferase activity, transferring glycosyl groups
DQQ11_RS05575	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
DQQ11_RS05585	COG0495	leucyl-tRNA aminoacylation
DQQ11_RS05590	COG2244	polysaccharide biosynthetic process
DQQ11_RS05595	COG1187	pseudouridine synthase activity
DQQ11_RS05600	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DQQ11_RS05605	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DQQ11_RS05615	COG3842	ATPase activity
DQQ11_RS05620	COG1175	transmembrane transport
DQQ11_RS05625	COG0395	ABC-type sugar transport system, permease component
DQQ11_RS05635	COG0584	glycerophosphoryl diester phosphodiesterase
DQQ11_RS05640	COG1428	Deoxynucleoside kinase
DQQ11_RS05645	COG1970	mechanosensitive ion channel activity
DQQ11_RS05650	COG1511	domain protein
DQQ11_RS05650	COG1511	domain protein
DQQ11_RS05680	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DQQ11_RS05685	COG0789	Transcriptional regulator
DQQ11_RS05695	COG0697	spore germination
DQQ11_RS05700	COG0561	phosphatase activity
DQQ11_RS05720	COG3279	Response regulator of the LytR AlgR family
DQQ11_RS05740	COG1846	Transcriptional regulator
DQQ11_RS05755	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DQQ11_RS05795	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DQQ11_RS05795	COG0646	methionine synthase
DQQ11_RS05800	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DQQ11_RS05810	COG2046	Belongs to the sulfate adenylyltransferase family
DQQ11_RS05815	COG0529	Catalyzes the synthesis of activated sulfate
DQQ11_RS05820	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DQQ11_RS05830	COG0471	metal ion transport
DQQ11_RS05830	COG3273	potassium ion transport
DQQ11_RS05835	COG0534	Mate efflux family protein
DQQ11_RS05855	COG2153	protein acetylation
DQQ11_RS05860	COG0018	arginyl-trna synthetase
DQQ11_RS05870	COG1136	(ABC) transporter
DQQ11_RS05870	COG0577	efflux transmembrane transporter activity
DQQ11_RS05890	COG1447	Phosphotransferase system cellobiose-specific component IIA
DQQ11_RS05895	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS05900	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS05905	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS05915	COG1376	ErfK ybiS ycfS ynhG family protein
DQQ11_RS05920	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DQQ11_RS05925	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DQQ11_RS05935	COG0436	Aminotransferase
DQQ11_RS05940	COG1438	arginine binding
DQQ11_RS05950	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DQQ11_RS05955	COG3679	Belongs to the UPF0342 family
DQQ11_RS05960	COG0420	3'-5' exonuclease activity
DQQ11_RS05965	COG4717	serine-type aminopeptidase activity
DQQ11_RS05970	COG3481	metal-dependent phosphohydrolase, HD sub domain
DQQ11_RS05985	COG0583	DNA-binding transcription factor activity
DQQ11_RS06000	COG0431	NADPH-dependent FMN reductase
DQQ11_RS06000	COG1053	succinate dehydrogenase
DQQ11_RS06000	COG3976	FMN-binding domain protein
DQQ11_RS06020	COG3850	Histidine kinase
DQQ11_RS06020	COG5002	protein histidine kinase activity
DQQ11_RS06025	COG0745	RESPONSE REGULATOR receiver
DQQ11_RS06035	COG0463	Glycosyl transferase, family 2
DQQ11_RS06040	COG0586	Pfam SNARE associated Golgi protein
DQQ11_RS06045	COG0463	Glycosyl transferase, family 2
DQQ11_RS06065	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DQQ11_RS06065	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DQQ11_RS06070	COG0307	riboflavin synthase, alpha
DQQ11_RS06075	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DQQ11_RS06075	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DQQ11_RS06080	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DQQ11_RS06095	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DQQ11_RS06105	COG0446	pyridine nucleotide-disulphide oxidoreductase
DQQ11_RS06135	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DQQ11_RS06145	COG0537	adenosine 5'-monophosphoramidase activity
DQQ11_RS06150	COG1131	(ABC) transporter
DQQ11_RS06155	COG4473	ABC transporter
DQQ11_RS06160	COG0510	thiamine kinase activity
DQQ11_RS06165	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DQQ11_RS06175	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DQQ11_RS06180	COG1674	ftsk spoiiie
DQQ11_RS06185	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DQQ11_RS06210	COG0719	Fe-S assembly protein
DQQ11_RS06215	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DQQ11_RS06225	COG0719	Fe-S assembly protein
DQQ11_RS06230	COG2151	metal-sulfur cluster biosynthetic enzyme
DQQ11_RS06245	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DQQ11_RS06245	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DQQ11_RS06250	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
DQQ11_RS06255	COG0237	dephospho-CoA kinase activity
DQQ11_RS06260	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DQQ11_RS06265	COG3611	Membrane attachment protein
DQQ11_RS06270	COG1484	DNA-dependent DNA replication
DQQ11_RS06275	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DQQ11_RS06280	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DQQ11_RS06285	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DQQ11_RS06290	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DQQ11_RS06300	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DQQ11_RS06310	COG1733	regulation of RNA biosynthetic process
DQQ11_RS06320	COG1215	transferase activity, transferring glycosyl groups
DQQ11_RS06335	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
DQQ11_RS06340	COG1534	Rna-binding protein
DQQ11_RS06345	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DQQ11_RS06350	COG1713	HD superfamily hydrolase involved in NAD metabolism
DQQ11_RS06355	COG0799	negative regulation of ribosome biogenesis
DQQ11_RS06360	COG2226	methyltransferase
DQQ11_RS06365	COG1323	Belongs to the UPF0348 family
DQQ11_RS06375	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DQQ11_RS06390	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
DQQ11_RS06395	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DQQ11_RS06400	COG0745	RESPONSE REGULATOR receiver
DQQ11_RS06405	COG5002	protein histidine kinase activity
DQQ11_RS06415	COG0419	ATPase involved in DNA repair
DQQ11_RS06430	COG0706	membrane insertase activity
DQQ11_RS06435	COG1254	Belongs to the acylphosphatase family
DQQ11_RS06440	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DQQ11_RS06450	COG1733	regulation of RNA biosynthetic process
DQQ11_RS06455	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DQQ11_RS06460	COG0072	phenylalanine-tRNA ligase activity
DQQ11_RS06460	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DQQ11_RS06465	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DQQ11_RS06470	COG0572	uridine kinase
DQQ11_RS06475	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DQQ11_RS06495	COG4841	protein insertion into membrane
DQQ11_RS06505	COG0768	penicillin binding
DQQ11_RS06510	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DQQ11_RS06515	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DQQ11_RS06520	COG0457	Tetratricopeptide repeat
DQQ11_RS06520	COG0705	Rhomboid family
DQQ11_RS06530	COG1940	carbohydrate kinase activity
DQQ11_RS06550	COG0584	glycerophosphoryl diester phosphodiesterase
DQQ11_RS06555	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DQQ11_RS06560	COG0789	Transcriptional regulator
DQQ11_RS06610	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DQQ11_RS06620	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DQQ11_RS06625	COG0006	proline dipeptidase activity
DQQ11_RS06630	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DQQ11_RS06635	COG1302	Protein conserved in bacteria
DQQ11_RS06640	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DQQ11_RS06645	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DQQ11_RS06650	COG1570	exodeoxyribonuclease VII activity
DQQ11_RS06655	COG1722	exodeoxyribonuclease VII activity
DQQ11_RS06660	COG0142	geranyltranstransferase activity
DQQ11_RS06665	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
DQQ11_RS06670	COG1438	arginine binding
DQQ11_RS06675	COG0497	DNA recombination
DQQ11_RS06690	COG1732	Glycine betaine
DQQ11_RS06705	COG0194	GDP metabolic process
DQQ11_RS06710	COG1758	RNA polymerase activity
DQQ11_RS06715	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DQQ11_RS06720	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DQQ11_RS06725	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DQQ11_RS06730	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DQQ11_RS06730	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DQQ11_RS06735	COG0631	protein serine/threonine phosphatase activity
DQQ11_RS06740	COG0515	serine threonine protein kinase
DQQ11_RS06740	COG2815	serine threonine protein kinase
DQQ11_RS06745	COG1162	GTPase activity
DQQ11_RS06750	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DQQ11_RS06755	COG1564	THIamine pyrophosphokinase
DQQ11_RS06765	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DQQ11_RS06770	COG1302	Protein conserved in bacteria
DQQ11_RS06775	COG1461	Dihydroxyacetone kinase
DQQ11_RS06780	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DQQ11_RS06785	COG0416	fatty acid biosynthetic process
DQQ11_RS06790	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DQQ11_RS06795	COG0571	ribonuclease III activity
DQQ11_RS06800	COG1196	nuclear chromosome segregation
DQQ11_RS06805	COG0552	protein localization to endoplasmic reticulum
DQQ11_RS06810	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
DQQ11_RS06815	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DQQ11_RS06820	COG0228	four-way junction DNA binding
DQQ11_RS06825	COG1837	Belongs to the UPF0109 family
DQQ11_RS06830	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DQQ11_RS06835	COG0336	Belongs to the RNA methyltransferase TrmD family
DQQ11_RS06840	COG0335	large ribosomal subunit rRNA binding
DQQ11_RS06860	COG1131	(ABC) transporter
DQQ11_RS06875	COG0512	Glutamine amidotransferase of anthranilate synthase
DQQ11_RS06875	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DQQ11_RS06880	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DQQ11_RS06885	COG0134	indole-3-glycerol-phosphate synthase activity
DQQ11_RS06890	COG0135	phosphoribosylanthranilate isomerase activity
DQQ11_RS06895	COG0133	tryptophan synthase activity
DQQ11_RS06900	COG0159	tryptophan synthase activity
DQQ11_RS06915	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DQQ11_RS06925	COG1473	amidohydrolase
DQQ11_RS06930	COG1063	alcohol dehydrogenase
DQQ11_RS06940	COG0300	oxidoreductase activity
DQQ11_RS06950	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DQQ11_RS06955	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DQQ11_RS06960	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DQQ11_RS06965	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DQQ11_RS06970	COG1028	Short-chain dehydrogenase reductase Sdr
DQQ11_RS06975	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DQQ11_RS06990	COG0439	Biotin carboxylase
DQQ11_RS07005	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DQQ11_RS07015	COG1811	Na channel or pump
DQQ11_RS07020	COG0583	DNA-binding transcription factor activity
DQQ11_RS07025	COG1607	acyl-coa hydrolase
DQQ11_RS07030	COG1162	GTPase activity
DQQ11_RS07040	COG0477	Major facilitator Superfamily
DQQ11_RS07095	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DQQ11_RS07100	COG3397	chitin binding
DQQ11_RS07115	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
DQQ11_RS07125	COG3152	Membrane
DQQ11_RS07130	COG1597	lipid kinase activity
DQQ11_RS07145	COG2261	transglycosylase associated protein
DQQ11_RS07150	COG3237	CsbD-like
DQQ11_RS07165	COG1942	4-Oxalocrotonate Tautomerase
DQQ11_RS07205	COG0531	amino acid
DQQ11_RS07210	COG0561	phosphatase activity
DQQ11_RS07215	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
DQQ11_RS07215	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DQQ11_RS07235	COG2017	converts alpha-aldose to the beta-anomer
DQQ11_RS07240	COG1304	FMN binding
DQQ11_RS07265	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DQQ11_RS07265	COG1199	ATP-dependent helicase activity
DQQ11_RS07280	COG0017	Asparaginyl-tRNA synthetase
DQQ11_RS07295	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DQQ11_RS07300	COG2011	ABC-type metal ion transport system permease component
DQQ11_RS07305	COG1464	Belongs to the NlpA lipoprotein family
DQQ11_RS07315	COG1177	transmembrane transport
DQQ11_RS07320	COG1840	ABC-type Fe3 transport system, periplasmic component
DQQ11_RS07335	COG3331	DNA recombination
DQQ11_RS07340	COG4474	Belongs to the UPF0398 family
DQQ11_RS07345	COG3599	regulation of cell shape
DQQ11_RS07355	COG0116	Belongs to the methyltransferase superfamily
DQQ11_RS07360	COG1073	alpha beta
DQQ11_RS07370	COG1216	Glycosyl transferase, family 2
DQQ11_RS07390	COG1619	proteins homologs of microcin C7 resistance protein MccF
DQQ11_RS07415	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DQQ11_RS07430	COG2759	Belongs to the formate--tetrahydrofolate ligase family
DQQ11_RS07435	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DQQ11_RS07440	COG0564	pseudouridine synthase activity
DQQ11_RS07445	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
DQQ11_RS07450	COG0505	Belongs to the CarA family
DQQ11_RS07455	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DQQ11_RS07470	COG5646	InterPro IPR014922
DQQ11_RS07495	COG1131	(ABC) transporter
DQQ11_RS07500	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
DQQ11_RS07505	COG1293	RNA-binding protein homologous to eukaryotic snRNP
DQQ11_RS07515	COG1307	EDD domain protein, DegV family
DQQ11_RS07575	COG1113	amino acid transport
DQQ11_RS07595	COG1620	l-lactate permease
DQQ11_RS07605	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DQQ11_RS07630	COG1846	Transcriptional regulator
DQQ11_RS07635	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DQQ11_RS07670	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DQQ11_RS07675	COG1227	inorganic diphosphatase activity
DQQ11_RS07680	COG0583	DNA-binding transcription factor activity
DQQ11_RS07690	COG0187	DNA topoisomerase II activity
DQQ11_RS07695	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DQQ11_RS07705	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DQQ11_RS07710	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DQQ11_RS07715	COG4974	Belongs to the 'phage' integrase family
DQQ11_RS07720	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
DQQ11_RS07725	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DQQ11_RS07730	COG0758	DNA mediated transformation
DQQ11_RS07735	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DQQ11_RS07740	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
DQQ11_RS07750	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DQQ11_RS07755	COG0583	DNA-binding transcription factor activity
DQQ11_RS07770	COG2814	Major facilitator Superfamily
DQQ11_RS07780	COG0793	Belongs to the peptidase S41A family
DQQ11_RS07780	COG3409	Peptidoglycan-binding domain 1 protein
DQQ11_RS07785	COG4479	Belongs to the UPF0346 family
DQQ11_RS07790	COG4698	Protein conserved in bacteria
DQQ11_RS07795	COG2755	lipolytic protein G-D-S-L family
DQQ11_RS07800	COG1307	EDD domain protein, DegV family
DQQ11_RS07805	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DQQ11_RS07810	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
DQQ11_RS07815	COG0488	(ABC) transporter
DQQ11_RS07825	COG0617	tRNA 3'-terminal CCA addition
DQQ11_RS07830	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
DQQ11_RS07835	COG0561	phosphatase activity
DQQ11_RS07840	COG0457	Tetratricopeptide repeat
DQQ11_RS07855	COG1160	GTP binding
DQQ11_RS07860	COG0539	negative regulation of cytoplasmic translation
DQQ11_RS07865	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
DQQ11_RS07875	COG0514	ATP-dependent DNA helicase (RecQ)
DQQ11_RS07885	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
DQQ11_RS07890	COG1187	pseudouridine synthase activity
DQQ11_RS07895	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DQQ11_RS07900	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DQQ11_RS07910	COG4974	Belongs to the 'phage' integrase family
DQQ11_RS07915	COG2996	Protein conserved in bacteria
DQQ11_RS07930	COG0205	6-phosphofructokinase activity
DQQ11_RS07935	COG0587	DNA-directed DNA polymerase activity
DQQ11_RS07945	COG0542	response to heat
DQQ11_RS07955	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DQQ11_RS07960	COG2384	SAM-dependent methyltransferase
DQQ11_RS07985	COG0574	Belongs to the PEP-utilizing enzyme family
DQQ11_RS07985	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DQQ11_RS07995	COG1846	Transcriptional regulator
DQQ11_RS08020	COG2217	Heavy metal translocating P-type atpase
DQQ11_RS08025	COG0148	phosphopyruvate hydratase activity
DQQ11_RS08030	COG0477	Major facilitator Superfamily
DQQ11_RS08040	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DQQ11_RS08045	COG0446	pyridine nucleotide-disulphide oxidoreductase
DQQ11_RS08050	COG1349	DNA-binding transcription factor activity
DQQ11_RS08060	COG1393	Belongs to the ArsC family
DQQ11_RS08080	COG0546	phosphoglycolate phosphatase activity
DQQ11_RS08110	COG0583	DNA-binding transcription factor activity
DQQ11_RS08115	COG0604	alcohol dehydrogenase
DQQ11_RS08125	COG0446	pyridine nucleotide-disulphide oxidoreductase
DQQ11_RS08130	COG2197	response regulator
DQQ11_RS08135	COG4585	Histidine kinase
DQQ11_RS08145	COG1131	(ABC) transporter
DQQ11_RS08155	COG0519	Catalyzes the synthesis of GMP from XMP
DQQ11_RS08170	COG1131	(ABC) transporter
DQQ11_RS08190	COG1131	(ABC) transporter
DQQ11_RS08195	COG1725	Transcriptional regulator
DQQ11_RS08205	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DQQ11_RS08210	COG0358	DNA primase activity
DQQ11_RS08215	COG0751	glycine-tRNA ligase activity
DQQ11_RS08220	COG0752	glycyl-tRNA synthetase alpha subunit
DQQ11_RS08225	COG1381	Involved in DNA repair and RecF pathway recombination
DQQ11_RS08230	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DQQ11_RS08235	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
DQQ11_RS08240	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DQQ11_RS08245	COG1702	phosphate starvation-inducible protein PhoH
DQQ11_RS08250	COG1610	YqeY-like protein
DQQ11_RS08255	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DQQ11_RS08260	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
DQQ11_RS08270	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
DQQ11_RS08280	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DQQ11_RS08290	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DQQ11_RS08295	COG0124	histidyl-tRNA synthetase
DQQ11_RS08300	COG4991	sh3 domain protein
DQQ11_RS08300	COG3103	Sh3 type 3 domain protein
DQQ11_RS08300	COG0860	N-Acetylmuramoyl-L-alanine amidase
DQQ11_RS08305	COG3001	Fructosamine kinase
DQQ11_RS08310	COG0546	phosphoglycolate phosphatase activity
DQQ11_RS08315	COG1490	D-aminoacyl-tRNA deacylase activity
DQQ11_RS08320	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DQQ11_RS08330	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DQQ11_RS08335	COG2264	protein methyltransferase activity
DQQ11_RS08340	COG2094	Belongs to the DNA glycosylase MPG family
DQQ11_RS08355	COG0481	GTPase activity
DQQ11_RS08360	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
DQQ11_RS08365	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DQQ11_RS08370	COG1696	Membrane protein involved in D-alanine export
DQQ11_RS08375	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DQQ11_RS08385	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DQQ11_RS08390	COG0484	heat shock protein binding
DQQ11_RS08395	COG0443	Heat shock 70 kDa protein
DQQ11_RS08400	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DQQ11_RS08405	COG1420	regulation of RNA biosynthetic process
DQQ11_RS08410	COG3527	Alpha-acetolactate decarboxylase
DQQ11_RS08415	COG0196	riboflavin kinase activity
DQQ11_RS08420	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DQQ11_RS08425	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DQQ11_RS08430	COG0287	Prephenate dehydrogenase
DQQ11_RS08435	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DQQ11_RS08445	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DQQ11_RS08450	COG0738	Major facilitator superfamily
DQQ11_RS08455	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DQQ11_RS08460	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DQQ11_RS08470	COG2740	Nucleic-acid-binding protein implicated in transcription termination
DQQ11_RS08475	COG0195	Participates in both transcription termination and antitermination
DQQ11_RS08480	COG0779	Required for maturation of 30S ribosomal subunits
DQQ11_RS08485	COG2176	DNA-directed DNA polymerase activity
DQQ11_RS08490	COG0442	prolyl-tRNA aminoacylation
DQQ11_RS08495	COG0750	zinc metalloprotease
DQQ11_RS08500	COG4589	Belongs to the CDS family
DQQ11_RS08505	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DQQ11_RS08510	COG0233	cytoplasmic translational termination
DQQ11_RS08515	COG0528	UMP kinase activity
DQQ11_RS08520	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DQQ11_RS08525	COG0052	Belongs to the universal ribosomal protein uS2 family
DQQ11_RS08535	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DQQ11_RS08540	COG2827	Endonuclease containing a URI domain
DQQ11_RS08545	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
DQQ11_RS08550	COG0204	Acyl-transferase
DQQ11_RS08555	COG3763	UPF0154 protein
DQQ11_RS08560	COG4224	UPF0291 protein
DQQ11_RS08565	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DQQ11_RS08580	COG3425	synthase
DQQ11_RS08595	COG0463	Glycosyl transferase, family 2
DQQ11_RS08605	COG1316	TRANSCRIPTIONal
DQQ11_RS08610	COG1116	anion transmembrane transporter activity
DQQ11_RS08620	COG0772	Belongs to the SEDS family
DQQ11_RS08815	COG1396	sequence-specific DNA binding
DQQ11_RS08885	COG0393	Putative heavy-metal-binding
DQQ11_RS08900	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DQQ11_RS08905	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DQQ11_RS08905	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
DQQ11_RS08910	COG5416	Lipopolysaccharide assembly protein A domain
DQQ11_RS08915	COG0300	oxidoreductase activity
DQQ11_RS08920	COG1234	tRNA 3'-trailer cleavage
DQQ11_RS08930	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DQQ11_RS08935	COG1349	DNA-binding transcription factor activity
DQQ11_RS08940	COG1105	Belongs to the carbohydrate kinase PfkB family
DQQ11_RS08945	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DQQ11_RS08945	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DQQ11_RS08945	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DQQ11_RS08950	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DQQ11_RS08975	COG0297	glycogen (starch) synthase activity
DQQ11_RS08980	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DQQ11_RS08985	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DQQ11_RS08995	COG0489	protein tyrosine kinase activity
DQQ11_RS09005	COG0322	excinuclease ABC activity
DQQ11_RS09010	COG1126	abc transporter atp-binding protein
DQQ11_RS09015	COG0765	amino acid transport
DQQ11_RS09035	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DQQ11_RS09040	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DQQ11_RS09045	COG0544	peptidyl-prolyl cis-trans isomerase activity
DQQ11_RS09050	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DQQ11_RS09075	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DQQ11_RS09080	COG0268	Binds directly to 16S ribosomal RNA
DQQ11_RS09085	COG1466	dna polymerase III delta subunit
DQQ11_RS09090	COG0658	competence protein
DQQ11_RS09090	COG2333	competence protein COMEC
DQQ11_RS09095	COG2131	deaminase
DQQ11_RS09100	COG1555	photosystem II stabilization
DQQ11_RS09100	COG1596	polysaccharide export
DQQ11_RS09105	COG3480	Lon protease (S16) C-terminal proteolytic domain
DQQ11_RS09110	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DQQ11_RS09115	COG0742	ribosomal rna small subunit methyltransferase
DQQ11_RS09120	COG4471	UPF0298 protein
DQQ11_RS09125	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
DQQ11_RS09130	COG0772	Belongs to the SEDS family
DQQ11_RS09165	COG1217	gtp-binding protein TYPA
DQQ11_RS09170	COG0483	inositol monophosphate 1-phosphatase activity
DQQ11_RS09175	COG4476	Belongs to the UPF0223 family
DQQ11_RS09180	COG0039	L-malate dehydrogenase activity
DQQ11_RS09205	COG0242	peptide deformylase activity
DQQ11_RS09215	COG5503	Protein of unknown function (DUF1447)
DQQ11_RS09220	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
DQQ11_RS09225	COG1597	lipid kinase activity
DQQ11_RS09235	COG3584	3D domain protein
DQQ11_RS09235	COG1388	LysM domain
DQQ11_RS09240	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DQQ11_RS09245	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DQQ11_RS09275	COG0569	domain protein
DQQ11_RS09280	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DQQ11_RS09285	COG0482	sulfurtransferase activity
DQQ11_RS09295	COG1104	cysteine desulfurase activity
DQQ11_RS09300	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DQQ11_RS09310	COG0494	nUDIX hydrolase
DQQ11_RS09315	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DQQ11_RS09325	COG3279	Response regulator of the LytR AlgR family
DQQ11_RS09340	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DQQ11_RS09345	COG3599	regulation of cell shape
DQQ11_RS09355	COG0762	integral membrane protein
DQQ11_RS09360	COG1799	cell septum assembly
DQQ11_RS09375	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DQQ11_RS09380	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DQQ11_RS09385	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DQQ11_RS09390	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DQQ11_RS09395	COG0768	penicillin binding
DQQ11_RS09405	COG0275	rRNA processing
DQQ11_RS09410	COG2001	Belongs to the MraZ family
DQQ11_RS09435	COG1674	ftsk spoiiie
DQQ11_RS09440	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DQQ11_RS09450	COG1114	Component of the transport system for branched-chain amino acids
DQQ11_RS09465	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DQQ11_RS09470	COG0628	permease
DQQ11_RS09480	COG2706	6-phosphogluconolactonase activity
DQQ11_RS09485	COG3142	Participates in the control of copper homeostasis
DQQ11_RS09490	COG0564	pseudouridine synthase activity
DQQ11_RS09495	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DQQ11_RS09500	COG2357	RelA SpoT domain protein
DQQ11_RS09510	COG1164	Oligoendopeptidase f
DQQ11_RS09520	COG4862	establishment of competence for transformation
DQQ11_RS09525	COG1393	Belongs to the ArsC family
DQQ11_RS09530	COG1234	tRNA 3'-trailer cleavage
DQQ11_RS09675	COG1098	S1 RNA binding domain
DQQ11_RS09685	COG0586	Pfam SNARE associated Golgi protein
DQQ11_RS09695	COG0647	UMP catabolic process
DQQ11_RS09700	COG4470	Protein conserved in bacteria
DQQ11_RS09705	COG0737	Belongs to the 5'-nucleotidase family
DQQ11_RS09720	COG1113	amino acid transport
DQQ11_RS09725	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DQQ11_RS09730	COG0827	DNA restriction-modification system
DQQ11_RS09760	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DQQ11_RS09770	COG0217	transcriptional regulatory protein
DQQ11_RS09785	COG1609	Transcriptional regulator
DQQ11_RS09790	COG0006	proline dipeptidase activity
DQQ11_RS09795	COG0789	Transcriptional regulator
DQQ11_RS09810	COG0668	transmembrane transport
DQQ11_RS09815	COG1473	amidohydrolase
DQQ11_RS09820	COG2171	N-acyltransferase activity
DQQ11_RS09825	COG0517	IMP dehydrogenase activity
DQQ11_RS09835	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DQQ11_RS09840	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DQQ11_RS09845	COG1719	4-vinyl reductase, 4VR
DQQ11_RS09850	COG3118	belongs to the thioredoxin family
DQQ11_RS09855	COG1193	negative regulation of DNA recombination
DQQ11_RS09865	COG3906	Belongs to the UPF0473 family
DQQ11_RS09870	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DQQ11_RS09875	COG4472	Bacterial protein of unknown function (DUF965)
DQQ11_RS09880	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DQQ11_RS09885	COG0513	Belongs to the DEAD box helicase family
DQQ11_RS09890	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DQQ11_RS09895	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DQQ11_RS09900	COG1862	Preprotein translocase
DQQ11_RS09905	COG0343	queuine tRNA-ribosyltransferase activity
DQQ11_RS09910	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DQQ11_RS09915	COG2255	four-way junction helicase activity
DQQ11_RS09920	COG0632	four-way junction helicase activity
DQQ11_RS09950	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DQQ11_RS09955	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DQQ11_RS09960	COG1692	metallophosphoesterase
DQQ11_RS09965	COG1418	mRNA catabolic process
DQQ11_RS09970	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DQQ11_RS09975	COG1546	Belongs to the CinA family
DQQ11_RS09975	COG1058	Belongs to the CinA family
DQQ11_RS09980	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DQQ11_RS09985	COG1426	Protein conserved in bacteria
DQQ11_RS09990	COG0612	Peptidase, M16
DQQ11_RS09995	COG0612	Peptidase, M16
DQQ11_RS10000	COG0527	aspartate kinase activity
DQQ11_RS10010	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DQQ11_RS10015	COG1126	abc transporter atp-binding protein
DQQ11_RS10020	COG0765	amino acid transport
DQQ11_RS10025	COG2894	cell division
DQQ11_RS10030	COG0850	regulation of cytokinetic process
DQQ11_RS10040	COG1792	Involved in formation and maintenance of cell shape
DQQ11_RS10045	COG1077	Cell shape determining protein MreB Mrl
DQQ11_RS10050	COG2003	Belongs to the UPF0758 family
DQQ11_RS10055	COG0285	dihydrofolate synthase activity
DQQ11_RS10060	COG0525	valine-tRNA ligase activity
DQQ11_RS10070	COG1181	Belongs to the D-alanine--D-alanine ligase family
DQQ11_RS10070	COG2918	glutathione biosynthetic process
DQQ11_RS10080	COG0301	tRNA thio-modification
DQQ11_RS10085	COG1104	cysteine desulfurase activity
DQQ11_RS10095	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
DQQ11_RS10100	COG1956	GAF domain-containing protein
DQQ11_RS10105	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DQQ11_RS10110	COG4493	Belongs to the UPF0637 family
DQQ11_RS10125	COG0640	Transcriptional regulator
DQQ11_RS10130	COG0366	Alpha amylase catalytic
DQQ11_RS10140	COG3716	PTS system mannose fructose sorbose family IID component
DQQ11_RS10145	COG3715	PTS system
DQQ11_RS10150	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS10155	COG1609	Transcriptional regulator
DQQ11_RS10160	COG0189	ligase activity
DQQ11_RS10160	COG2918	glutathione biosynthetic process
DQQ11_RS10165	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DQQ11_RS10180	COG0589	response to stress
DQQ11_RS10200	COG1181	Belongs to the D-alanine--D-alanine ligase family
DQQ11_RS10220	COG1464	Belongs to the NlpA lipoprotein family
DQQ11_RS10225	COG2011	ABC-type metal ion transport system permease component
DQQ11_RS10230	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DQQ11_RS10235	COG0509	glycine decarboxylation via glycine cleavage system
DQQ11_RS10240	COG0772	Belongs to the SEDS family
DQQ11_RS10250	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DQQ11_RS10255	COG1077	Cell shape determining protein MreB Mrl
DQQ11_RS10265	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DQQ11_RS10270	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DQQ11_RS10275	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DQQ11_RS10280	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DQQ11_RS10285	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DQQ11_RS10290	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DQQ11_RS10295	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DQQ11_RS10300	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DQQ11_RS10305	COG0356	it plays a direct role in the translocation of protons across the membrane
DQQ11_RS10310	COG2233	PERMEase
DQQ11_RS10320	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DQQ11_RS10325	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DQQ11_RS10330	COG0009	L-threonylcarbamoyladenylate synthase
DQQ11_RS10335	COG2890	protein-(glutamine-N5) methyltransferase activity
DQQ11_RS10340	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DQQ11_RS10345	COG1435	thymidine kinase activity
DQQ11_RS10350	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DQQ11_RS10355	COG3442	glutamine amidotransferase
DQQ11_RS10360	COG1482	cell wall glycoprotein biosynthetic process
DQQ11_RS10365	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DQQ11_RS10375	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DQQ11_RS10390	COG1132	(ABC) transporter
DQQ11_RS10405	COG0726	polysaccharide deacetylase
DQQ11_RS10545	COG2868	ribosomal protein
DQQ11_RS10755	COG4886	Leucine-rich repeat (LRR) protein
DQQ11_RS10755	COG4932	domain protein
DQQ11_RS10800	COG1132	(ABC) transporter
DQQ11_RS10810	COG1136	(ABC) transporter
DQQ11_RS10810	COG0577	efflux transmembrane transporter activity
DQQ11_RS10820	COG0166	Belongs to the GPI family
DQQ11_RS10825	COG4975	Glucose uptake
DQQ11_RS10830	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DQQ11_RS10835	COG3850	Histidine kinase
DQQ11_RS10835	COG5002	protein histidine kinase activity
DQQ11_RS10840	COG0745	RESPONSE REGULATOR receiver
DQQ11_RS10845	COG2848	UPF0210 protein
DQQ11_RS10850	COG3830	Belongs to the UPF0237 family
DQQ11_RS10875	COG0477	Major facilitator Superfamily
DQQ11_RS10895	COG0791	NLP P60 protein
DQQ11_RS10900	COG1522	sequence-specific DNA binding
DQQ11_RS10920	COG0488	(ABC) transporter
DQQ11_RS10950	COG1263	PTS System
DQQ11_RS10950	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS10950	COG2190	(PTS) system
DQQ11_RS10955	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DQQ11_RS10960	COG1307	EDD domain protein, DegV family
DQQ11_RS10970	COG2873	o-acetylhomoserine
DQQ11_RS10975	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
DQQ11_RS10990	COG4120	Belongs to the binding-protein-dependent transport system permease family
DQQ11_RS11000	COG0446	pyridine nucleotide-disulphide oxidoreductase
DQQ11_RS11005	COG2084	Dehydrogenase
DQQ11_RS11010	COG0861	Integral membrane protein TerC family
DQQ11_RS11015	COG0110	maltose O-acetyltransferase activity
DQQ11_RS11020	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DQQ11_RS11025	COG0140	phosphoribosyl-ATP diphosphatase activity
DQQ11_RS11030	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DQQ11_RS11035	COG0107	imidazoleglycerol-phosphate synthase activity
DQQ11_RS11040	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
DQQ11_RS11045	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DQQ11_RS11050	COG0131	Imidazoleglycerol-phosphate dehydratase
DQQ11_RS11055	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DQQ11_RS11060	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DQQ11_RS11065	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
DQQ11_RS11070	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
DQQ11_RS11095	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DQQ11_RS11110	COG3548	integral membrane protein
DQQ11_RS11130	COG1368	sulfuric ester hydrolase activity
DQQ11_RS11135	COG0584	glycerophosphoryl diester phosphodiesterase
DQQ11_RS11145	COG0492	ferredoxin-NADP+ reductase activity
DQQ11_RS11155	COG4932	domain protein
DQQ11_RS11160	COG2326	polyphosphate kinase activity
DQQ11_RS11165	COG0778	Nitroreductase
DQQ11_RS11175	COG0328	RNA-DNA hybrid ribonuclease activity
DQQ11_RS11180	COG4975	Glucose uptake
DQQ11_RS11195	COG1349	DNA-binding transcription factor activity
DQQ11_RS11200	COG1882	Formate acetyltransferase
DQQ11_RS11220	COG1609	Transcriptional regulator
DQQ11_RS11225	COG1737	Transcriptional regulator
DQQ11_RS11230	COG0673	inositol 2-dehydrogenase activity
DQQ11_RS11235	COG0673	inositol 2-dehydrogenase activity
DQQ11_RS11240	COG0025	NhaP-type Na H and K H
DQQ11_RS11245	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DQQ11_RS11250	COG1335	isochorismatase
DQQ11_RS11260	COG1131	(ABC) transporter
DQQ11_RS11265	COG1725	Transcriptional regulator
DQQ11_RS11305	COG0028	Belongs to the TPP enzyme family
DQQ11_RS11315	COG1073	alpha beta
DQQ11_RS11320	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DQQ11_RS11325	COG0626	cystathionine gamma-synthase activity
DQQ11_RS11355	COG0095	Lipoate-protein ligase
DQQ11_RS11360	COG1705	Flagellar rod assembly protein muramidase FlgJ
DQQ11_RS11370	COG3716	PTS system mannose fructose sorbose family IID component
DQQ11_RS11375	COG3715	PTS system
DQQ11_RS11380	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS11385	COG2188	Transcriptional regulator
DQQ11_RS11390	COG0589	response to stress
DQQ11_RS11395	COG0564	pseudouridine synthase activity
DQQ11_RS11400	COG1396	sequence-specific DNA binding
DQQ11_RS11415	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
DQQ11_RS11425	COG2188	Transcriptional regulator
DQQ11_RS11430	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DQQ11_RS11440	COG1418	mRNA catabolic process
DQQ11_RS11470	COG1253	flavin adenine dinucleotide binding
DQQ11_RS11475	COG1780	Probably involved in ribonucleotide reductase function
DQQ11_RS11480	COG0025	NhaP-type Na H and K H
DQQ11_RS11485	COG2814	Major facilitator Superfamily
DQQ11_RS11490	COG0789	Transcriptional regulator
DQQ11_RS11495	COG0604	alcohol dehydrogenase
DQQ11_RS11505	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DQQ11_RS11515	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DQQ11_RS11520	COG0436	Aminotransferase
DQQ11_RS11540	COG0583	DNA-binding transcription factor activity
DQQ11_RS11545	COG0702	epimerase
DQQ11_RS11560	COG1074	ATP-dependent DNA helicase activity
DQQ11_RS11565	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
DQQ11_RS11575	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DQQ11_RS11580	COG0284	orotidine-5'-phosphate decarboxylase activity
DQQ11_RS11585	COG0167	dihydroorotate dehydrogenase activity
DQQ11_RS11590	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DQQ11_RS11595	COG0505	Belongs to the CarA family
DQQ11_RS11600	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DQQ11_RS11605	COG0540	Belongs to the ATCase OTCase family
DQQ11_RS11610	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
DQQ11_RS11615	COG2508	Transcriptional regulator
DQQ11_RS11620	COG2233	PERMEase
DQQ11_RS11625	COG2252	PERMEase
DQQ11_RS11645	COG1215	transferase activity, transferring glycosyl groups
DQQ11_RS11655	COG0151	Belongs to the GarS family
DQQ11_RS11660	COG0138	bifunctional purine biosynthesis protein purh
DQQ11_RS11665	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DQQ11_RS11670	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
DQQ11_RS11685	COG0047	phosphoribosylformylglycinamidine synthase activity
DQQ11_RS11690	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DQQ11_RS11695	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DQQ11_RS11700	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DQQ11_RS11710	COG3976	FMN-binding domain protein
DQQ11_RS11710	COG1053	succinate dehydrogenase
DQQ11_RS11710	COG0431	NADPH-dependent FMN reductase
DQQ11_RS11715	COG3976	FMN-binding domain protein
DQQ11_RS11715	COG1053	succinate dehydrogenase
DQQ11_RS11715	COG0431	NADPH-dependent FMN reductase
DQQ11_RS11720	COG0095	Lipoate-protein ligase
DQQ11_RS11725	COG2365	Tyrosine phosphatase family
DQQ11_RS11745	COG1136	(ABC) transporter
DQQ11_RS11760	COG1725	Transcriptional regulator
DQQ11_RS11765	COG1131	(ABC) transporter
DQQ11_RS11775	COG0589	response to stress
DQQ11_RS11785	COG2246	polysaccharide biosynthetic process
DQQ11_RS11805	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DQQ11_RS11825	COG0366	Alpha amylase catalytic
DQQ11_RS11835	COG0561	phosphatase activity
DQQ11_RS11845	COG0110	maltose O-acetyltransferase activity
DQQ11_RS11850	COG0494	nUDIX hydrolase
DQQ11_RS11885	COG1827	regulation of RNA biosynthetic process
DQQ11_RS11890	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DQQ11_RS11895	COG1309	transcriptional regulator
DQQ11_RS11905	COG1131	(ABC) transporter
DQQ11_RS11910	COG3048	D-serine ammonia-lyase activity
DQQ11_RS11915	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS11920	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS11925	COG1447	Phosphotransferase system cellobiose-specific component IIA
DQQ11_RS11930	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS11935	COG2188	Transcriptional regulator
DQQ11_RS11940	COG1216	Glycosyl transferase, family 2
DQQ11_RS11955	COG0561	phosphatase activity
DQQ11_RS11960	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DQQ11_RS11985	COG0716	FMN binding
DQQ11_RS12005	COG0710	3-dehydroquinate dehydratase activity
DQQ11_RS12010	COG0531	amino acid
DQQ11_RS12055	COG4720	Psort location CytoplasmicMembrane, score
DQQ11_RS12060	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DQQ11_RS12075	COG4990	cell redox homeostasis
DQQ11_RS12095	COG1811	Na channel or pump
DQQ11_RS12100	COG4978	Transcriptional regulator
DQQ11_RS12100	COG0789	Transcriptional regulator
DQQ11_RS12115	COG0577	efflux transmembrane transporter activity
DQQ11_RS12120	COG1136	(ABC) transporter
DQQ11_RS12160	COG2814	Major facilitator Superfamily
DQQ11_RS12170	COG2814	Major facilitator Superfamily
DQQ11_RS12180	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DQQ11_RS12185	COG2855	membrane
DQQ11_RS12190	COG0583	DNA-binding transcription factor activity
DQQ11_RS12200	COG0438	transferase activity, transferring glycosyl groups
DQQ11_RS12215	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DQQ11_RS12225	COG4152	abc transporter atp-binding protein
DQQ11_RS12235	COG4221	oxidoreductase activity
DQQ11_RS12250	COG0789	Transcriptional regulator
DQQ11_RS12270	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DQQ11_RS12295	COG0456	acetyltransferase
DQQ11_RS12320	COG0583	DNA-binding transcription factor activity
DQQ11_RS12330	COG1063	alcohol dehydrogenase
DQQ11_RS12340	COG0656	L-ascorbic acid biosynthetic process
DQQ11_RS12360	COG4975	Glucose uptake
DQQ11_RS12370	COG0656	L-ascorbic acid biosynthetic process
DQQ11_RS12375	COG0583	DNA-binding transcription factor activity
DQQ11_RS12395	COG4221	oxidoreductase activity
DQQ11_RS12400	COG0656	L-ascorbic acid biosynthetic process
DQQ11_RS12420	COG0589	response to stress
DQQ11_RS12425	COG0110	maltose O-acetyltransferase activity
DQQ11_RS12430	COG1011	Hydrolase
DQQ11_RS12445	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DQQ11_RS12455	COG0667	Aldo Keto reductase
DQQ11_RS12460	COG1132	(ABC) transporter
DQQ11_RS12465	COG1132	(ABC) transporter
DQQ11_RS12470	COG2814	Major facilitator Superfamily
DQQ11_RS12485	COG1511	domain protein
DQQ11_RS12485	COG1511	domain protein
DQQ11_RS12495	COG0640	Transcriptional regulator
DQQ11_RS12520	COG0488	(ABC) transporter
DQQ11_RS12525	COG0561	phosphatase activity
DQQ11_RS12535	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DQQ11_RS12550	COG2270	Major facilitator Superfamily
DQQ11_RS12590	COG2200	EAL domain
DQQ11_RS12600	COG1328	CTP reductase activity
DQQ11_RS12610	COG0242	peptide deformylase activity
DQQ11_RS12620	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DQQ11_RS12640	COG0583	DNA-binding transcription factor activity
DQQ11_RS12650	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
DQQ11_RS12710	COG0697	spore germination
DQQ11_RS12735	COG1940	carbohydrate kinase activity
DQQ11_RS12740	COG1132	(ABC) transporter
DQQ11_RS12750	COG0778	Nitroreductase
DQQ11_RS12755	COG2190	(PTS) system
DQQ11_RS12755	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS12755	COG1263	PTS System
DQQ11_RS12765	COG4120	Belongs to the binding-protein-dependent transport system permease family
DQQ11_RS12795	COG0617	tRNA 3'-terminal CCA addition
DQQ11_RS12795	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DQQ11_RS12795	COG3620	sequence-specific DNA binding
DQQ11_RS12800	COG0410	ABC transporter
DQQ11_RS12815	COG0559	Belongs to the binding-protein-dependent transport system permease family
DQQ11_RS12830	COG5549	protein import
DQQ11_RS12830	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DQQ11_RS12835	COG2246	polysaccharide biosynthetic process
DQQ11_RS12845	COG1914	H( )-stimulated, divalent metal cation uptake system
DQQ11_RS12865	COG0640	Transcriptional regulator
DQQ11_RS12910	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS12915	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS12920	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS12930	COG0789	Transcriptional regulator
DQQ11_RS12935	COG0741	lytic transglycosylase activity
DQQ11_RS12955	COG0803	Belongs to the bacterial solute-binding protein 9 family
DQQ11_RS12980	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DQQ11_RS12995	COG4221	oxidoreductase activity
DQQ11_RS13040	COG1132	(ABC) transporter
DQQ11_RS13045	COG1132	(ABC) transporter
DQQ11_RS13055	COG1473	amidohydrolase
DQQ11_RS13060	COG1028	Short-chain dehydrogenase reductase Sdr
DQQ11_RS13075	COG0531	amino acid
DQQ11_RS13105	COG2217	Heavy metal translocating P-type atpase
DQQ11_RS13175	COG1063	alcohol dehydrogenase
DQQ11_RS13215	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DQQ11_RS13220	COG1733	regulation of RNA biosynthetic process
DQQ11_RS13225	COG2814	Major facilitator Superfamily
DQQ11_RS13235	COG0367	asparagine synthase
DQQ11_RS13240	COG3279	Response regulator of the LytR AlgR family
DQQ11_RS13255	COG1309	transcriptional regulator
DQQ11_RS13265	COG1012	belongs to the aldehyde dehydrogenase family
DQQ11_RS13280	COG1733	regulation of RNA biosynthetic process
DQQ11_RS13290	COG0300	oxidoreductase activity
DQQ11_RS13310	COG4989	oxidoreductase activity
DQQ11_RS13325	COG0477	Major facilitator Superfamily
DQQ11_RS13335	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DQQ11_RS13340	COG1120	ATPase activity
DQQ11_RS13345	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DQQ11_RS13350	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DQQ11_RS13355	COG1309	transcriptional regulator
DQQ11_RS13365	COG4221	oxidoreductase activity
DQQ11_RS13370	COG0110	maltose O-acetyltransferase activity
DQQ11_RS13375	COG1028	Short-chain dehydrogenase reductase Sdr
DQQ11_RS13415	COG0481	GTPase activity
DQQ11_RS13425	COG2816	NAD+ diphosphatase activity
DQQ11_RS13435	COG1053	succinate dehydrogenase
DQQ11_RS13445	COG0783	Belongs to the Dps family
DQQ11_RS13455	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS13460	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS13480	COG0789	Transcriptional regulator
DQQ11_RS13500	COG0693	protein deglycase activity
DQQ11_RS13525	COG1136	(ABC) transporter
DQQ11_RS13525	COG0577	efflux transmembrane transporter activity
DQQ11_RS13535	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
DQQ11_RS13555	COG1376	ErfK ybiS ycfS ynhG family protein
DQQ11_RS13560	COG0656	L-ascorbic acid biosynthetic process
DQQ11_RS13575	COG0477	Major facilitator Superfamily
DQQ11_RS13600	COG0588	phosphoglycerate mutase activity
DQQ11_RS13605	COG0628	permease
DQQ11_RS13610	COG1846	Transcriptional regulator
DQQ11_RS13610	COG1940	carbohydrate kinase activity
DQQ11_RS13620	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DQQ11_RS13630	COG2815	serine threonine protein kinase
DQQ11_RS13630	COG0515	serine threonine protein kinase
DQQ11_RS13670	COG1247	-acetyltransferase
DQQ11_RS13675	COG1686	Belongs to the peptidase S11 family
DQQ11_RS13695	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DQQ11_RS13700	COG0516	GMP reductase activity
DQQ11_RS13700	COG0517	IMP dehydrogenase activity
DQQ11_RS13710	COG0012	GTP binding
DQQ11_RS13715	COG4481	Protein conserved in bacteria
DQQ11_RS13720	COG1475	DNA binding
DQQ11_RS13725	COG1192	Involved in chromosome partitioning
DQQ11_RS13735	COG0357	Ribosomal RNA small subunit methyltransferase G
DQQ11_RS13740	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DQQ11_RS13755	COG0583	DNA-binding transcription factor activity
DQQ11_RS13760	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DQQ11_RS13765	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DQQ11_RS13770	COG0765	amino acid transport
DQQ11_RS13775	COG1126	abc transporter atp-binding protein
DQQ11_RS13780	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DQQ11_RS13805	COG1263	PTS System
DQQ11_RS13805	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS13805	COG2190	(PTS) system
DQQ11_RS13810	COG0366	Alpha amylase catalytic
DQQ11_RS13815	COG1609	Transcriptional regulator
DQQ11_RS13830	COG0390	transport system, permease component
DQQ11_RS13835	COG4619	ABC transporter
DQQ11_RS13840	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DQQ11_RS13855	COG0561	phosphatase activity
DQQ11_RS13865	COG0383	alpha-mannosidase activity
DQQ11_RS13870	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DQQ11_RS13870	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DQQ11_RS13870	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DQQ11_RS13875	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DQQ11_RS13880	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DQQ11_RS13880	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DQQ11_RS13880	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DQQ11_RS13885	COG3711	transcriptional antiterminator
DQQ11_RS13885	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DQQ11_RS13900	COG1263	PTS System
DQQ11_RS13900	COG2190	(PTS) system
DQQ11_RS13900	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS13930	COG0735	belongs to the Fur family
DQQ11_RS13955	COG1380	Effector of murein hydrolase LrgA
DQQ11_RS13965	COG1307	EDD domain protein, DegV family
DQQ11_RS13975	COG2738	Putative neutral zinc metallopeptidase
DQQ11_RS13980	COG1233	COG1233 Phytoene dehydrogenase and related
DQQ11_RS13985	COG1562	ergosterol biosynthetic process
DQQ11_RS13995	COG1929	Belongs to the glycerate kinase type-1 family
DQQ11_RS14010	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DQQ11_RS14015	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DQQ11_RS14020	COG0516	GMP reductase activity
DQQ11_RS14025	COG2365	Tyrosine phosphatase family
DQQ11_RS14030	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DQQ11_RS14040	COG0531	amino acid
DQQ11_RS14045	COG3158	transport of potassium into the cell
DQQ11_RS14050	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DQQ11_RS14055	COG0628	permease
DQQ11_RS14060	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DQQ11_RS14075	COG1272	protein, Hemolysin III
DQQ11_RS14080	COG0640	Transcriptional regulator
DQQ11_RS14115	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DQQ11_RS14125	COG0302	gtp cyclohydrolase
DQQ11_RS14130	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DQQ11_RS14150	COG0803	Belongs to the bacterial solute-binding protein 9 family
DQQ11_RS14155	COG2814	Major facilitator Superfamily
DQQ11_RS14185	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DQQ11_RS14190	COG1882	Formate acetyltransferase
DQQ11_RS14195	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DQQ11_RS14205	COG2151	metal-sulfur cluster biosynthetic enzyme
DQQ11_RS14210	COG4989	oxidoreductase activity
DQQ11_RS14245	COG2217	Heavy metal translocating P-type atpase
DQQ11_RS14255	COG2315	Protein conserved in bacteria
DQQ11_RS14265	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
DQQ11_RS14270	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DQQ11_RS14285	COG1757	Na H antiporter
DQQ11_RS14290	COG1113	amino acid transport
DQQ11_RS14300	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DQQ11_RS14315	COG1393	Belongs to the ArsC family
DQQ11_RS14320	COG3189	MarR family transcriptional regulator
DQQ11_RS14330	COG1194	a g-specific adenine glycosylase
DQQ11_RS14345	COG0071	Belongs to the small heat shock protein (HSP20) family
DQQ11_RS14365	COG0697	spore germination
DQQ11_RS14380	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
DQQ11_RS14405	COG0477	Major facilitator Superfamily
DQQ11_RS14465	COG0737	Belongs to the 5'-nucleotidase family
DQQ11_RS14475	COG0656	L-ascorbic acid biosynthetic process
DQQ11_RS14495	COG1968	undecaprenyl-diphosphatase activity
DQQ11_RS14500	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
DQQ11_RS14535	COG2207	Transcriptional regulator
DQQ11_RS14560	COG0076	glutamate decarboxylase activity
DQQ11_RS14630	COG2226	methyltransferase
DQQ11_RS14650	COG2217	Heavy metal translocating P-type atpase
DQQ11_RS14655	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DQQ11_RS14660	COG3118	belongs to the thioredoxin family
DQQ11_RS14665	COG1937	Protein conserved in bacteria
DQQ11_RS14685	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DQQ11_RS14690	COG3590	peptidase
DQQ11_RS14715	COG0446	pyridine nucleotide-disulphide oxidoreductase
DQQ11_RS14765	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DQQ11_RS14780	COG1114	Component of the transport system for branched-chain amino acids
DQQ11_RS14790	COG1874	Beta-galactosidase
DQQ11_RS14795	COG1609	Transcriptional regulator
DQQ11_RS14805	COG0477	Major facilitator Superfamily
DQQ11_RS14825	COG2184	nucleotidyltransferase activity
DQQ11_RS14830	COG2944	sequence-specific DNA binding
DQQ11_RS14840	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
DQQ11_RS14845	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DQQ11_RS14850	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
DQQ11_RS14870	COG2190	(PTS) system
DQQ11_RS14870	COG2211	Major facilitator Superfamily
DQQ11_RS14875	COG2017	converts alpha-aldose to the beta-anomer
DQQ11_RS14880	COG1609	Transcriptional regulator
DQQ11_RS14885	COG0667	Aldo Keto reductase
DQQ11_RS14905	COG0710	3-dehydroquinate dehydratase activity
DQQ11_RS14910	COG0738	Major facilitator superfamily
DQQ11_RS14915	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DQQ11_RS14920	COG0583	DNA-binding transcription factor activity
DQQ11_RS14925	COG0738	Major facilitator superfamily
DQQ11_RS14935	COG2267	carboxylic ester hydrolase activity
DQQ11_RS14940	COG2188	Transcriptional regulator
DQQ11_RS14945	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DQQ11_RS14950	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
DQQ11_RS14955	COG2971	BadF BadG BcrA BcrD
DQQ11_RS14965	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS14975	COG3711	transcriptional antiterminator
DQQ11_RS14980	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS14985	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS14990	COG1263	PTS System
DQQ11_RS14990	COG2190	(PTS) system
DQQ11_RS14990	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DQQ11_RS15010	COG2211	Major facilitator Superfamily
DQQ11_RS15035	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
DQQ11_RS15050	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DQQ11_RS15070	COG3711	transcriptional antiterminator
DQQ11_RS15085	COG3775	system Galactitol-specific IIC component
DQQ11_RS15090	COG3414	Phosphotransferase system galactitol-specific IIB component
DQQ11_RS15100	COG1349	DNA-binding transcription factor activity
DQQ11_RS15105	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
DQQ11_RS15115	COG0110	maltose O-acetyltransferase activity
DQQ11_RS15120	COG2160	L-arabinose isomerase activity
DQQ11_RS15140	COG1609	Transcriptional regulator
DQQ11_RS15145	COG1737	Transcriptional regulator
DQQ11_RS15165	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DQQ11_RS15185	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DQQ11_RS15190	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
DQQ11_RS15220	COG2261	transglycosylase associated protein
DQQ11_RS15230	COG1393	Belongs to the ArsC family
DQQ11_RS15250	COG4512	PFAM Accessory gene regulator B
DQQ11_RS15265	COG1304	FMN binding
DQQ11_RS15270	COG0028	Belongs to the TPP enzyme family
DQQ11_RS15275	COG1959	2 iron, 2 sulfur cluster binding
DQQ11_RS15280	COG0028	Belongs to the TPP enzyme family
DQQ11_RS15295	COG0235	Class ii aldolase
DQQ11_RS15305	COG3254	rhamnose metabolic process
DQQ11_RS15310	COG1070	Carbohydrate kinase
DQQ11_RS15315	COG2814	Major facilitator Superfamily
DQQ11_RS15320	COG2207	Transcriptional regulator
DQQ11_RS15325	COG1349	DNA-binding transcription factor activity
DQQ11_RS15410	COG1609	Transcriptional regulator
DQQ11_RS15410	COG2207	Transcriptional regulator
DQQ11_RS15450	COG2723	6-phospho-beta-galactosidase activity
DQQ11_RS15455	COG1940	carbohydrate kinase activity
DQQ11_RS15460	COG0383	alpha-mannosidase activity
DQQ11_RS15470	COG2188	Transcriptional regulator
DQQ11_RS15480	COG3842	ATPase activity
DQQ11_RS15490	COG2207	Transcriptional regulator
DQQ11_RS15490	COG4753	response regulator
DQQ11_RS15495	COG2972	Histidine kinase
DQQ11_RS15505	COG0366	Alpha amylase catalytic
DQQ11_RS15510	COG1653	transport
DQQ11_RS15515	COG0395	ABC-type sugar transport system, permease component
DQQ11_RS15530	COG2207	Transcriptional regulator
DQQ11_RS15530	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DQQ11_RS15535	COG1132	(ABC) transporter
DQQ11_RS15540	COG1132	(ABC) transporter
DQQ11_RS15545	COG2188	Transcriptional regulator
DQQ11_RS15560	COG3732	PTS system glucitol sorbitol-specific
DQQ11_RS15565	COG3730	PTS system glucitol sorbitol-specific
DQQ11_RS15585	COG4975	Glucose uptake
DQQ11_RS15590	COG1869	D-ribose catabolic process
DQQ11_RS15605	COG1454	alcohol dehydrogenase
DQQ11_RS15605	COG1012	belongs to the aldehyde dehydrogenase family
DQQ11_RS15615	COG1695	Transcriptional regulator
DQQ11_RS15620	COG3479	Phenolic acid decarboxylase
DQQ11_RS15635	COG1307	EDD domain protein, DegV family
DQQ11_RS15675	COG0445	tRNA wobble uridine modification
DQQ11_RS15680	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DQQ11_RS15685	COG1847	R3H domain protein
DQQ11_RS15695	COG4166	transmembrane transport
DQQ11_RS15700	COG0706	membrane insertase activity
DQQ11_RS15705	COG0594	ribonuclease P activity
DQQ11_RS15710	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DQQ11_RS15740	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DQQ11_RS15750	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DQQ11_RS15765	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DQQ11_RS15805	COG2826	transposase and inactivated derivatives, IS30 family
DQQ11_RS15885	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DQQ11_RS15920	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DQQ11_RS15950	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
DQQ11_RS15955	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
DQQ11_RS15960	COG2205	protein histidine kinase activity
DQQ11_RS15965	COG0745	RESPONSE REGULATOR receiver