AYR52_RS00040	PWY-6174	mevalonate pathway II (archaea)
AYR52_RS00040	PWY-7391	isoprene biosynthesis II (engineered)
AYR52_RS00040	PWY-7524	mevalonate pathway III (archaea)
AYR52_RS00040	PWY-922	mevalonate pathway I
AYR52_RS00140	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS00145	PWY-5958	acridone alkaloid biosynthesis
AYR52_RS00145	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYR52_RS00145	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYR52_RS00150	PWY-5958	acridone alkaloid biosynthesis
AYR52_RS00150	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYR52_RS00150	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYR52_RS00385	PWY-6700	queuosine biosynthesis
AYR52_RS00415	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYR52_RS00415	PWY-6855	chitin degradation I (archaea)
AYR52_RS00415	PWY-6906	chitin derivatives degradation
AYR52_RS00435	PWY-6531	mannitol cycle
AYR52_RS00450	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYR52_RS00450	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYR52_RS00465	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS00465	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS00495	PWY-7181	pyrimidine deoxyribonucleosides degradation
AYR52_RS00515	PWY-6936	seleno-amino acid biosynthesis
AYR52_RS00525	PWY-1622	formaldehyde assimilation I (serine pathway)
AYR52_RS00525	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS00595	PWY-5480	pyruvate fermentation to ethanol I
AYR52_RS00595	PWY-5485	pyruvate fermentation to acetate IV
AYR52_RS00595	PWY-5493	reductive monocarboxylic acid cycle
AYR52_RS00620	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYR52_RS00620	PWY-5723	Rubisco shunt
AYR52_RS00880	PWY-6317	galactose degradation I (Leloir pathway)
AYR52_RS00880	PWY-6527	stachyose degradation
AYR52_RS01050	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYR52_RS01055	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYR52_RS01060	PWY-1042	glycolysis IV (plant cytosol)
AYR52_RS01060	PWY-1622	formaldehyde assimilation I (serine pathway)
AYR52_RS01060	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYR52_RS01060	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS01060	PWY-5723	Rubisco shunt
AYR52_RS01060	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYR52_RS01060	PWY-6886	1-butanol autotrophic biosynthesis
AYR52_RS01060	PWY-6901	superpathway of glucose and xylose degradation
AYR52_RS01060	PWY-7003	glycerol degradation to butanol
AYR52_RS01060	PWY-7124	ethylene biosynthesis V (engineered)
AYR52_RS01060	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AYR52_RS01070	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AYR52_RS01070	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYR52_RS01160	PWY-5481	pyruvate fermentation to lactate
AYR52_RS01160	PWY-6901	superpathway of glucose and xylose degradation
AYR52_RS01165	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AYR52_RS01200	PWY-6599	guanine and guanosine salvage II
AYR52_RS01200	PWY-6609	adenine and adenosine salvage III
AYR52_RS01200	PWY-6610	adenine and adenosine salvage IV
AYR52_RS01200	PWY-6620	guanine and guanosine salvage
AYR52_RS01270	PWY-3341	L-proline biosynthesis III
AYR52_RS01270	PWY-4981	L-proline biosynthesis II (from arginine)
AYR52_RS01270	PWY-6344	L-ornithine degradation II (Stickland reaction)
AYR52_RS01275	PWY-6906	chitin derivatives degradation
AYR52_RS01275	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AYR52_RS01275	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AYR52_RS01285	PWY-3221	dTDP-L-rhamnose biosynthesis II
AYR52_RS01285	PWY-6808	dTDP-D-forosamine biosynthesis
AYR52_RS01285	PWY-6942	dTDP-D-desosamine biosynthesis
AYR52_RS01285	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AYR52_RS01285	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AYR52_RS01285	PWY-6974	dTDP-L-olivose biosynthesis
AYR52_RS01285	PWY-6976	dTDP-L-mycarose biosynthesis
AYR52_RS01285	PWY-7104	dTDP-L-megosamine biosynthesis
AYR52_RS01285	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AYR52_RS01285	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AYR52_RS01285	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AYR52_RS01285	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AYR52_RS01285	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AYR52_RS01285	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AYR52_RS01285	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AYR52_RS01285	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AYR52_RS01285	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AYR52_RS01285	PWY-7688	AYR52_RS01285
AYR52_RS01295	PWY-3221	dTDP-L-rhamnose biosynthesis II
AYR52_RS01295	PWY-6808	dTDP-D-forosamine biosynthesis
AYR52_RS01295	PWY-6942	dTDP-D-desosamine biosynthesis
AYR52_RS01295	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AYR52_RS01295	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AYR52_RS01295	PWY-6974	dTDP-L-olivose biosynthesis
AYR52_RS01295	PWY-6976	dTDP-L-mycarose biosynthesis
AYR52_RS01295	PWY-7104	dTDP-L-megosamine biosynthesis
AYR52_RS01295	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AYR52_RS01295	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AYR52_RS01295	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AYR52_RS01295	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AYR52_RS01295	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AYR52_RS01295	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AYR52_RS01295	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AYR52_RS01295	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AYR52_RS01295	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AYR52_RS01295	PWY-7688	AYR52_RS01295
AYR52_RS01330	PWY-5381	pyridine nucleotide cycling (plants)
AYR52_RS01380	PWY-702	L-methionine biosynthesis II
AYR52_RS01535	PWY-5392	reductive TCA cycle II
AYR52_RS01535	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYR52_RS01535	PWY-5690	TCA cycle II (plants and fungi)
AYR52_RS01535	PWY-5913	TCA cycle VI (obligate autotrophs)
AYR52_RS01535	PWY-6728	methylaspartate cycle
AYR52_RS01535	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYR52_RS01535	PWY-7254	TCA cycle VII (acetate-producers)
AYR52_RS01535	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYR52_RS01555	PWY-4381	fatty acid biosynthesis initiation I
AYR52_RS01570	PWY-4381	fatty acid biosynthesis initiation I
AYR52_RS01570	PWY-5743	3-hydroxypropanoate cycle
AYR52_RS01570	PWY-5744	glyoxylate assimilation
AYR52_RS01570	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYR52_RS01570	PWY-6679	jadomycin biosynthesis
AYR52_RS01570	PWY-6722	candicidin biosynthesis
AYR52_RS01570	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYR52_RS01575	PWY-4381	fatty acid biosynthesis initiation I
AYR52_RS01575	PWY-5743	3-hydroxypropanoate cycle
AYR52_RS01575	PWY-5744	glyoxylate assimilation
AYR52_RS01575	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYR52_RS01575	PWY-6679	jadomycin biosynthesis
AYR52_RS01575	PWY-6722	candicidin biosynthesis
AYR52_RS01575	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYR52_RS01595	PWY-702	L-methionine biosynthesis II
AYR52_RS01600	PWY-1622	formaldehyde assimilation I (serine pathway)
AYR52_RS01600	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS01635	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYR52_RS01750	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYR52_RS01750	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYR52_RS01750	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYR52_RS01750	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYR52_RS01750	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS01750	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS01750	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYR52_RS01750	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYR52_RS01755	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYR52_RS01755	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYR52_RS01755	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYR52_RS01755	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYR52_RS01755	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS01755	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS01755	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYR52_RS01755	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYR52_RS01825	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYR52_RS01825	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYR52_RS01825	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS01825	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AYR52_RS01825	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYR52_RS01825	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYR52_RS01850	PWY-2201	folate transformations I
AYR52_RS01865	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYR52_RS01865	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AYR52_RS01865	PWY-6936	seleno-amino acid biosynthesis
AYR52_RS01865	PWY-702	L-methionine biosynthesis II
AYR52_RS01995	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AYR52_RS01995	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AYR52_RS01995	PWY-7622	UDP-galactofuranose biosynthesis
AYR52_RS02130	PWY-3801	sucrose degradation II (sucrose synthase)
AYR52_RS02130	PWY-6527	stachyose degradation
AYR52_RS02130	PWY-7238	sucrose biosynthesis II
AYR52_RS02130	PWY-7343	UDP-glucose biosynthesis
AYR52_RS02150	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
AYR52_RS02150	PWY-5368	dimorphecolate biosynthesis
AYR52_RS02150	PWY-5995	linoleate biosynthesis I (plants)
AYR52_RS02150	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
AYR52_RS02150	PWY-6803	phosphatidylcholine acyl editing
AYR52_RS02150	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
AYR52_RS02150	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AYR52_RS02150	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AYR52_RS02150	PWY-7470	phosphatidylcholine biosynthesis VII
AYR52_RS02150	PWY-7618	ricinoleate biosynthesis
AYR52_RS02165	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
AYR52_RS02165	PWY-5368	dimorphecolate biosynthesis
AYR52_RS02165	PWY-5995	linoleate biosynthesis I (plants)
AYR52_RS02165	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
AYR52_RS02165	PWY-6803	phosphatidylcholine acyl editing
AYR52_RS02165	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
AYR52_RS02165	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AYR52_RS02165	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AYR52_RS02165	PWY-7470	phosphatidylcholine biosynthesis VII
AYR52_RS02165	PWY-7618	ricinoleate biosynthesis
AYR52_RS02240	PWY-6700	queuosine biosynthesis
AYR52_RS02245	PWY-6700	queuosine biosynthesis
AYR52_RS02255	PWY-3162	L-tryptophan degradation V (side chain pathway)
AYR52_RS02255	PWY-5057	L-valine degradation II
AYR52_RS02255	PWY-5076	L-leucine degradation III
AYR52_RS02255	PWY-5078	L-isoleucine degradation II
AYR52_RS02255	PWY-5079	L-phenylalanine degradation III
AYR52_RS02255	PWY-5082	L-methionine degradation III
AYR52_RS02255	PWY-5162	2-oxopentenoate degradation
AYR52_RS02255	PWY-5436	L-threonine degradation IV
AYR52_RS02255	PWY-5480	pyruvate fermentation to ethanol I
AYR52_RS02255	PWY-5486	pyruvate fermentation to ethanol II
AYR52_RS02255	PWY-5751	phenylethanol biosynthesis
AYR52_RS02255	PWY-6313	serotonin degradation
AYR52_RS02255	PWY-6333	acetaldehyde biosynthesis I
AYR52_RS02255	PWY-6342	noradrenaline and adrenaline degradation
AYR52_RS02255	PWY-6587	pyruvate fermentation to ethanol III
AYR52_RS02255	PWY-6802	salidroside biosynthesis
AYR52_RS02255	PWY-6871	3-methylbutanol biosynthesis
AYR52_RS02255	PWY-7013	L-1,2-propanediol degradation
AYR52_RS02255	PWY-7085	triethylamine degradation
AYR52_RS02255	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYR52_RS02255	PWY-7118	chitin degradation to ethanol
AYR52_RS02255	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AYR52_RS02255	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AYR52_RS02260	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYR52_RS02275	PWY-1281	sulfoacetaldehyde degradation I
AYR52_RS02275	PWY-5482	pyruvate fermentation to acetate II
AYR52_RS02275	PWY-5485	pyruvate fermentation to acetate IV
AYR52_RS02275	PWY-5497	purine nucleobases degradation II (anaerobic)
AYR52_RS02275	PWY-6637	sulfolactate degradation II
AYR52_RS02340	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS02340	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS02345	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AYR52_RS02355	PWY-2941	L-lysine biosynthesis II
AYR52_RS02360	PWY-2941	L-lysine biosynthesis II
AYR52_RS02370	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYR52_RS02370	PWY-6148	tetrahydromethanopterin biosynthesis
AYR52_RS02370	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AYR52_RS02370	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYR52_RS02375	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYR52_RS02375	PWY-6148	tetrahydromethanopterin biosynthesis
AYR52_RS02375	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AYR52_RS02375	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYR52_RS02380	PWY-5663	tetrahydrobiopterin biosynthesis I
AYR52_RS02380	PWY-5664	tetrahydrobiopterin biosynthesis II
AYR52_RS02380	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYR52_RS02380	PWY-6703	preQ<sub>0</sub> biosynthesis
AYR52_RS02380	PWY-6983	tetrahydrobiopterin biosynthesis III
AYR52_RS02380	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AYR52_RS02385	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AYR52_RS02390	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AYR52_RS02390	PWY-6153	autoinducer AI-2 biosynthesis I
AYR52_RS02390	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
AYR52_RS02420	PWY-5344	L-homocysteine biosynthesis
AYR52_RS02420	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AYR52_RS02555	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYR52_RS02555	PWY-5723	Rubisco shunt
AYR52_RS02635	PWY-101	photosynthesis light reactions
AYR52_RS02635	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AYR52_RS02785	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYR52_RS02785	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AYR52_RS02945	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS02945	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS03030	PWY-5381	pyridine nucleotide cycling (plants)
AYR52_RS03030	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AYR52_RS03120	PWY-7193	pyrimidine ribonucleosides salvage I
AYR52_RS03190	PWY-2722	trehalose degradation IV
AYR52_RS03190	PWY-2723	trehalose degradation V
AYR52_RS03190	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYR52_RS03190	PWY-5661	GDP-glucose biosynthesis
AYR52_RS03190	PWY-621	sucrose degradation III (sucrose invertase)
AYR52_RS03190	PWY-7238	sucrose biosynthesis II
AYR52_RS03190	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYR52_RS03205	PWY-2781	<i>cis</i>-zeatin biosynthesis
AYR52_RS03220	PWY-381	nitrate reduction II (assimilatory)
AYR52_RS03220	PWY-5675	nitrate reduction V (assimilatory)
AYR52_RS03220	PWY-6549	L-glutamine biosynthesis III
AYR52_RS03220	PWY-6963	ammonia assimilation cycle I
AYR52_RS03220	PWY-6964	ammonia assimilation cycle II
AYR52_RS03335	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AYR52_RS03335	PWY-2201	folate transformations I
AYR52_RS03335	PWY-3841	folate transformations II
AYR52_RS03335	PWY-5030	L-histidine degradation III
AYR52_RS03335	PWY-5497	purine nucleobases degradation II (anaerobic)
AYR52_RS03335	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AYR52_RS03380	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS03405	PWY-6825	phosphatidylcholine biosynthesis V
AYR52_RS03425	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYR52_RS03425	PWY-5723	Rubisco shunt
AYR52_RS03430	PWY-6898	thiamin salvage III
AYR52_RS03430	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AYR52_RS03430	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AYR52_RS03430	PWY-7356	thiamin salvage IV (yeast)
AYR52_RS03590	PWY-6829	tRNA methylation (yeast)
AYR52_RS03590	PWY-7285	methylwyosine biosynthesis
AYR52_RS03590	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AYR52_RS03645	PWY-2941	L-lysine biosynthesis II
AYR52_RS03645	PWY-2942	L-lysine biosynthesis III
AYR52_RS03645	PWY-5097	L-lysine biosynthesis VI
AYR52_RS03920	PWY-2941	L-lysine biosynthesis II
AYR52_RS03920	PWY-2942	L-lysine biosynthesis III
AYR52_RS03920	PWY-5097	L-lysine biosynthesis VI
AYR52_RS03935	PWY-3841	folate transformations II
AYR52_RS03935	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYR52_RS03935	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS03935	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYR52_RS03935	PWY-7199	pyrimidine deoxyribonucleosides salvage
AYR52_RS03935	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYR52_RS03940	PWY-3841	folate transformations II
AYR52_RS03940	PWY-6614	tetrahydrofolate biosynthesis
AYR52_RS03975	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS04050	PWY-5480	pyruvate fermentation to ethanol I
AYR52_RS04050	PWY-5485	pyruvate fermentation to acetate IV
AYR52_RS04050	PWY-5493	reductive monocarboxylic acid cycle
AYR52_RS04090	PWY-5481	pyruvate fermentation to lactate
AYR52_RS04090	PWY-6901	superpathway of glucose and xylose degradation
AYR52_RS04120	PWY-5686	UMP biosynthesis
AYR52_RS04125	PWY-5686	UMP biosynthesis
AYR52_RS04130	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS04130	PWY-5686	UMP biosynthesis
AYR52_RS04130	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS04135	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS04135	PWY-5686	UMP biosynthesis
AYR52_RS04135	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS04140	PWY-5686	UMP biosynthesis
AYR52_RS04145	PWY-5686	UMP biosynthesis
AYR52_RS04155	PWY-7183	pyrimidine nucleobases salvage I
AYR52_RS04175	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AYR52_RS04175	PWY-2161	folate polyglutamylation
AYR52_RS04175	PWY-2201	folate transformations I
AYR52_RS04175	PWY-3841	folate transformations II
AYR52_RS04215	PWY-6825	phosphatidylcholine biosynthesis V
AYR52_RS04275	PWY-3821	galactose degradation III
AYR52_RS04275	PWY-6174	mevalonate pathway II (archaea)
AYR52_RS04275	PWY-6317	galactose degradation I (Leloir pathway)
AYR52_RS04275	PWY-6527	stachyose degradation
AYR52_RS04275	PWY-7391	isoprene biosynthesis II (engineered)
AYR52_RS04275	PWY-922	mevalonate pathway I
AYR52_RS04280	PWY-7391	isoprene biosynthesis II (engineered)
AYR52_RS04280	PWY-922	mevalonate pathway I
AYR52_RS04285	PWY-3821	galactose degradation III
AYR52_RS04285	PWY-6317	galactose degradation I (Leloir pathway)
AYR52_RS04285	PWY-6527	stachyose degradation
AYR52_RS04285	PWY-7391	isoprene biosynthesis II (engineered)
AYR52_RS04285	PWY-922	mevalonate pathway I
AYR52_RS04290	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AYR52_RS04290	PWY-6174	mevalonate pathway II (archaea)
AYR52_RS04290	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AYR52_RS04290	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AYR52_RS04290	PWY-7102	bisabolene biosynthesis
AYR52_RS04290	PWY-7391	isoprene biosynthesis II (engineered)
AYR52_RS04290	PWY-7524	mevalonate pathway III (archaea)
AYR52_RS04290	PWY-7560	methylerythritol phosphate pathway II
AYR52_RS04290	PWY-922	mevalonate pathway I
AYR52_RS04315	PWY-4261	glycerol degradation I
AYR52_RS04490	PWY-7205	CMP phosphorylation
AYR52_RS04555	PWY-1042	glycolysis IV (plant cytosol)
AYR52_RS04555	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYR52_RS04555	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS04555	PWY-5723	Rubisco shunt
AYR52_RS04555	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYR52_RS04555	PWY-6886	1-butanol autotrophic biosynthesis
AYR52_RS04555	PWY-6901	superpathway of glucose and xylose degradation
AYR52_RS04555	PWY-7003	glycerol degradation to butanol
AYR52_RS04555	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AYR52_RS04555	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYR52_RS04560	PWY-1042	glycolysis IV (plant cytosol)
AYR52_RS04560	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYR52_RS04560	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS04560	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYR52_RS04625	PWY-7039	phosphatidate metabolism, as a signaling molecule
AYR52_RS04760	PWY-2201	folate transformations I
AYR52_RS04785	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYR52_RS04785	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYR52_RS04890	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AYR52_RS04890	PWY-6167	flavin biosynthesis II (archaea)
AYR52_RS04890	PWY-6168	flavin biosynthesis III (fungi)
AYR52_RS05050	PWY-6174	mevalonate pathway II (archaea)
AYR52_RS05050	PWY-7391	isoprene biosynthesis II (engineered)
AYR52_RS05050	PWY-7524	mevalonate pathway III (archaea)
AYR52_RS05050	PWY-7571	ferrichrome A biosynthesis
AYR52_RS05050	PWY-922	mevalonate pathway I
AYR52_RS05060	PWY-6605	adenine and adenosine salvage II
AYR52_RS05060	PWY-6610	adenine and adenosine salvage IV
AYR52_RS05100	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AYR52_RS05100	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AYR52_RS05180	PWY-2941	L-lysine biosynthesis II
AYR52_RS05180	PWY-2942	L-lysine biosynthesis III
AYR52_RS05180	PWY-5097	L-lysine biosynthesis VI
AYR52_RS05205	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYR52_RS05225	PWY-6825	phosphatidylcholine biosynthesis V
AYR52_RS05240	PWY-5750	itaconate biosynthesis
AYR52_RS05240	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYR52_RS05240	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AYR52_RS05330	PWY-6823	molybdenum cofactor biosynthesis
AYR52_RS05330	PWY-6891	thiazole biosynthesis II (Bacillus)
AYR52_RS05330	PWY-6892	thiazole biosynthesis I (E. coli)
AYR52_RS05330	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AYR52_RS05335	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AYR52_RS05335	PWY-6153	autoinducer AI-2 biosynthesis I
AYR52_RS05335	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
AYR52_RS05365	PWY-2941	L-lysine biosynthesis II
AYR52_RS05365	PWY-5097	L-lysine biosynthesis VI
AYR52_RS05395	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYR52_RS05415	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYR52_RS05415	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYR52_RS05415	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYR52_RS05415	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYR52_RS05420	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS05420	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS05425	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYR52_RS05425	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYR52_RS05425	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYR52_RS05440	PWY-2201	folate transformations I
AYR52_RS05465	PWY-2941	L-lysine biosynthesis II
AYR52_RS05465	PWY-2942	L-lysine biosynthesis III
AYR52_RS05465	PWY-5097	L-lysine biosynthesis VI
AYR52_RS05465	PWY-6559	spermidine biosynthesis II
AYR52_RS05465	PWY-6562	norspermidine biosynthesis
AYR52_RS05465	PWY-7153	grixazone biosynthesis
AYR52_RS05525	PWY-2161	folate polyglutamylation
AYR52_RS05540	PWY-6823	molybdenum cofactor biosynthesis
AYR52_RS05540	PWY-6891	thiazole biosynthesis II (Bacillus)
AYR52_RS05540	PWY-6892	thiazole biosynthesis I (E. coli)
AYR52_RS05540	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AYR52_RS05575	PWY-6840	homoglutathione biosynthesis
AYR52_RS05575	PWY-7255	ergothioneine biosynthesis I (bacteria)
AYR52_RS05625	PWY-3341	L-proline biosynthesis III
AYR52_RS05625	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYR52_RS05630	PWY-3341	L-proline biosynthesis III
AYR52_RS05630	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYR52_RS05640	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AYR52_RS05645	PWY-6164	3-dehydroquinate biosynthesis I
AYR52_RS05650	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYR52_RS05650	PWY-6164	3-dehydroquinate biosynthesis I
AYR52_RS05650	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AYR52_RS05655	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYR52_RS05660	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYR52_RS05660	PWY-5723	Rubisco shunt
AYR52_RS05660	PWY-6891	thiazole biosynthesis II (Bacillus)
AYR52_RS05660	PWY-6892	thiazole biosynthesis I (E. coli)
AYR52_RS05660	PWY-6901	superpathway of glucose and xylose degradation
AYR52_RS05660	PWY-7560	methylerythritol phosphate pathway II
AYR52_RS06040	PWY-6823	molybdenum cofactor biosynthesis
AYR52_RS06040	PWY-6891	thiazole biosynthesis II (Bacillus)
AYR52_RS06040	PWY-6892	thiazole biosynthesis I (E. coli)
AYR52_RS06040	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AYR52_RS06095	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS06095	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS06110	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS06120	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS06150	PWY-7183	pyrimidine nucleobases salvage I
AYR52_RS06155	PWY-1622	formaldehyde assimilation I (serine pathway)
AYR52_RS06155	PWY-181	photorespiration
AYR52_RS06155	PWY-2161	folate polyglutamylation
AYR52_RS06155	PWY-2201	folate transformations I
AYR52_RS06155	PWY-3661	glycine betaine degradation I
AYR52_RS06155	PWY-3661-1	glycine betaine degradation II (mammalian)
AYR52_RS06155	PWY-3841	folate transformations II
AYR52_RS06155	PWY-5497	purine nucleobases degradation II (anaerobic)
AYR52_RS06175	PWY-7199	pyrimidine deoxyribonucleosides salvage
AYR52_RS06185	PWY-3861	mannitol degradation II
AYR52_RS06185	PWY-3881	mannitol biosynthesis
AYR52_RS06185	PWY-5659	GDP-mannose biosynthesis
AYR52_RS06185	PWY-6992	1,5-anhydrofructose degradation
AYR52_RS06185	PWY-7456	mannan degradation
AYR52_RS06185	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AYR52_RS06185	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AYR52_RS06245	PWY-1042	glycolysis IV (plant cytosol)
AYR52_RS06245	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYR52_RS06245	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS06245	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYR52_RS06245	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYR52_RS06260	PWY-3801	sucrose degradation II (sucrose synthase)
AYR52_RS06260	PWY-5054	sorbitol biosynthesis I
AYR52_RS06260	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AYR52_RS06260	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYR52_RS06260	PWY-5659	GDP-mannose biosynthesis
AYR52_RS06260	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYR52_RS06260	PWY-621	sucrose degradation III (sucrose invertase)
AYR52_RS06260	PWY-622	starch biosynthesis
AYR52_RS06260	PWY-6981	chitin biosynthesis
AYR52_RS06260	PWY-6992	1,5-anhydrofructose degradation
AYR52_RS06260	PWY-7238	sucrose biosynthesis II
AYR52_RS06260	PWY-7347	sucrose biosynthesis III
AYR52_RS06260	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYR52_RS06420	PWY-5482	pyruvate fermentation to acetate II
AYR52_RS06420	PWY-5485	pyruvate fermentation to acetate IV
AYR52_RS06420	PWY-5497	purine nucleobases degradation II (anaerobic)
AYR52_RS06475	PWY-6749	CMP-legionaminate biosynthesis I
AYR52_RS06480	PWY-6749	CMP-legionaminate biosynthesis I
AYR52_RS06525	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS06525	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS06550	PWY-1281	sulfoacetaldehyde degradation I
AYR52_RS06550	PWY-5482	pyruvate fermentation to acetate II
AYR52_RS06550	PWY-5485	pyruvate fermentation to acetate IV
AYR52_RS06550	PWY-5497	purine nucleobases degradation II (anaerobic)
AYR52_RS06550	PWY-6637	sulfolactate degradation II
AYR52_RS06600	PWY-1042	glycolysis IV (plant cytosol)
AYR52_RS06600	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS06600	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYR52_RS06600	PWY-7003	glycerol degradation to butanol
AYR52_RS06605	PWY-1042	glycolysis IV (plant cytosol)
AYR52_RS06605	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS06605	PWY-6886	1-butanol autotrophic biosynthesis
AYR52_RS06605	PWY-6901	superpathway of glucose and xylose degradation
AYR52_RS06605	PWY-7003	glycerol degradation to butanol
AYR52_RS06610	PWY-1042	glycolysis IV (plant cytosol)
AYR52_RS06610	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYR52_RS06610	PWY-6901	superpathway of glucose and xylose degradation
AYR52_RS06610	PWY-7003	glycerol degradation to butanol
AYR52_RS06655	PWY-4983	L-citrulline-nitric oxide cycle
AYR52_RS06655	PWY-4984	urea cycle
AYR52_RS06655	PWY-5	canavanine biosynthesis
AYR52_RS06655	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS06655	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS06660	PWY-4983	L-citrulline-nitric oxide cycle
AYR52_RS06660	PWY-4984	urea cycle
AYR52_RS06660	PWY-5	canavanine biosynthesis
AYR52_RS06660	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS06660	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS06680	PWY-6749	CMP-legionaminate biosynthesis I
AYR52_RS06700	PWY-5667	CDP-diacylglycerol biosynthesis I
AYR52_RS06700	PWY-5981	CDP-diacylglycerol biosynthesis III
AYR52_RS06810	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYR52_RS06810	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYR52_RS06810	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYR52_RS06830	PWY-5269	cardiolipin biosynthesis II
AYR52_RS06830	PWY-5668	cardiolipin biosynthesis I
AYR52_RS06870	PWY-6004	glycine betaine biosynthesis V (from glycine)
AYR52_RS07190	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AYR52_RS07190	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYR52_RS07190	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AYR52_RS07415	PWY-3801	sucrose degradation II (sucrose synthase)
AYR52_RS07415	PWY-6527	stachyose degradation
AYR52_RS07415	PWY-7238	sucrose biosynthesis II
AYR52_RS07415	PWY-7343	UDP-glucose biosynthesis
AYR52_RS07505	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AYR52_RS07505	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYR52_RS07505	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AYR52_RS07515	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYR52_RS07540	PWY-6123	inosine-5'-phosphate biosynthesis I
AYR52_RS07540	PWY-6124	inosine-5'-phosphate biosynthesis II
AYR52_RS07540	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS07540	PWY-7234	inosine-5'-phosphate biosynthesis III
AYR52_RS07625	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS07895	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AYR52_RS07900	PWY-5101	L-isoleucine biosynthesis II
AYR52_RS07900	PWY-5103	L-isoleucine biosynthesis III
AYR52_RS07900	PWY-5104	L-isoleucine biosynthesis IV
AYR52_RS07900	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AYR52_RS07900	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AYR52_RS07900	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AYR52_RS07900	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYR52_RS08150	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS08155	PWY-3961	phosphopantothenate biosynthesis II
AYR52_RS08225	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYR52_RS08225	PWY-6549	L-glutamine biosynthesis III
AYR52_RS08225	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYR52_RS08225	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYR52_RS08250	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYR52_RS08255	PWY-6012	acyl carrier protein metabolism I
AYR52_RS08255	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AYR52_RS08270	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS08270	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS08275	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS08275	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS08310	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS08315	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS08315	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS08325	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AYR52_RS08325	PWY-7177	UTP and CTP dephosphorylation II
AYR52_RS08325	PWY-7185	UTP and CTP dephosphorylation I
AYR52_RS08350	PWY-2201	folate transformations I
AYR52_RS08370	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYR52_RS08370	PWY-5667	CDP-diacylglycerol biosynthesis I
AYR52_RS08370	PWY-6453	stigma estolide biosynthesis
AYR52_RS08370	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AYR52_RS08370	PWY-7587	oleate biosynthesis III (cyanobacteria)
AYR52_RS08445	PWY-3461	L-tyrosine biosynthesis II
AYR52_RS08445	PWY-3462	L-phenylalanine biosynthesis II
AYR52_RS08445	PWY-6120	L-tyrosine biosynthesis III
AYR52_RS08445	PWY-6627	salinosporamide A biosynthesis
AYR52_RS08445	PWY-7626	bacilysin biosynthesis
AYR52_RS08510	PWY-4981	L-proline biosynthesis II (from arginine)
AYR52_RS08510	PWY-4984	urea cycle
AYR52_RS08510	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS08520	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS08520	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS08525	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS08530	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS08530	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS08535	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS08535	PWY-5686	UMP biosynthesis
AYR52_RS08535	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS08540	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS08540	PWY-5686	UMP biosynthesis
AYR52_RS08540	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS08810	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AYR52_RS08810	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AYR52_RS08815	PWY-3821	galactose degradation III
AYR52_RS08815	PWY-6317	galactose degradation I (Leloir pathway)
AYR52_RS08815	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AYR52_RS08815	PWY-6527	stachyose degradation
AYR52_RS08815	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AYR52_RS08815	PWY-7344	UDP-D-galactose biosynthesis
AYR52_RS09210	PWY-5482	pyruvate fermentation to acetate II
AYR52_RS09210	PWY-5485	pyruvate fermentation to acetate IV
AYR52_RS09210	PWY-5497	purine nucleobases degradation II (anaerobic)
AYR52_RS09220	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AYR52_RS09220	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYR52_RS09340	PWY-6823	molybdenum cofactor biosynthesis
AYR52_RS09385	PWY-2201	folate transformations I
AYR52_RS09385	PWY-3841	folate transformations II
AYR52_RS09395	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AYR52_RS09395	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYR52_RS09425	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AYR52_RS09510	PWY-6840	homoglutathione biosynthesis
AYR52_RS09510	PWY-7255	ergothioneine biosynthesis I (bacteria)
AYR52_RS09615	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AYR52_RS09620	PWY-6871	3-methylbutanol biosynthesis
AYR52_RS09795	PWY-5344	L-homocysteine biosynthesis
AYR52_RS09795	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AYR52_RS09860	PWY-6854	ethylene biosynthesis III (microbes)
AYR52_RS09950	PWY-6936	seleno-amino acid biosynthesis
AYR52_RS09950	PWY-7274	D-cycloserine biosynthesis
AYR52_RS10065	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS10065	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS10065	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYR52_RS10165	PWY-6825	phosphatidylcholine biosynthesis V
AYR52_RS10225	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AYR52_RS10225	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AYR52_RS10225	PWY-6897	thiamin salvage II
AYR52_RS10225	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AYR52_RS10225	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AYR52_RS10225	PWY-7356	thiamin salvage IV (yeast)
AYR52_RS10225	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYR52_RS10230	PWY-6910	hydroxymethylpyrimidine salvage
AYR52_RS10230	PWY-7356	thiamin salvage IV (yeast)
AYR52_RS10230	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYR52_RS10235	PWY-6897	thiamin salvage II
AYR52_RS10235	PWY-7356	thiamin salvage IV (yeast)
AYR52_RS10235	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYR52_RS10240	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS10360	PWY-4261	glycerol degradation I
AYR52_RS10365	PWY-4261	glycerol degradation I
AYR52_RS10365	PWY-6118	glycerol-3-phosphate shuttle
AYR52_RS10365	PWY-6952	glycerophosphodiester degradation
AYR52_RS10375	PWY-4261	glycerol degradation I
AYR52_RS10375	PWY-6118	glycerol-3-phosphate shuttle
AYR52_RS10375	PWY-6952	glycerophosphodiester degradation
AYR52_RS10395	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AYR52_RS10410	PWY-5482	pyruvate fermentation to acetate II
AYR52_RS10410	PWY-5485	pyruvate fermentation to acetate IV
AYR52_RS10410	PWY-5497	purine nucleobases degradation II (anaerobic)
AYR52_RS10435	PWY-5525	D-glucuronate degradation I
AYR52_RS10440	PWY-6167	flavin biosynthesis II (archaea)
AYR52_RS10440	PWY-6168	flavin biosynthesis III (fungi)
AYR52_RS10440	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS10445	PWY-6167	flavin biosynthesis II (archaea)
AYR52_RS10445	PWY-6168	flavin biosynthesis III (fungi)
AYR52_RS10445	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYR52_RS10450	PWY-6167	flavin biosynthesis II (archaea)
AYR52_RS10450	PWY-6168	flavin biosynthesis III (fungi)
AYR52_RS10550	PWY-2721	trehalose degradation III
AYR52_RS10550	PWY-2722	trehalose degradation IV
AYR52_RS10550	PWY-6317	galactose degradation I (Leloir pathway)
AYR52_RS10550	PWY-7459	kojibiose degradation
AYR52_RS10625	PWY-2941	L-lysine biosynthesis II
AYR52_RS10625	PWY-2942	L-lysine biosynthesis III
AYR52_RS10625	PWY-5097	L-lysine biosynthesis VI
AYR52_RS10625	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYR52_RS10625	PWY-6559	spermidine biosynthesis II
AYR52_RS10625	PWY-6562	norspermidine biosynthesis
AYR52_RS10625	PWY-7153	grixazone biosynthesis
AYR52_RS10625	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYR52_RS10650	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AYR52_RS10650	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYR52_RS10715	PWY-6123	inosine-5'-phosphate biosynthesis I
AYR52_RS10715	PWY-7234	inosine-5'-phosphate biosynthesis III
AYR52_RS10725	PWY-6123	inosine-5'-phosphate biosynthesis I
AYR52_RS10725	PWY-6124	inosine-5'-phosphate biosynthesis II
AYR52_RS10725	PWY-7234	inosine-5'-phosphate biosynthesis III
AYR52_RS10730	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYR52_RS10730	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYR52_RS10730	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYR52_RS10735	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYR52_RS10735	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYR52_RS10735	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYR52_RS10745	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYR52_RS10745	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYR52_RS10745	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYR52_RS10745	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYR52_RS10750	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYR52_RS10750	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYR52_RS10750	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYR52_RS10755	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYR52_RS10755	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AYR52_RS10760	PWY-6123	inosine-5'-phosphate biosynthesis I
AYR52_RS10760	PWY-6124	inosine-5'-phosphate biosynthesis II
AYR52_RS10760	PWY-7234	inosine-5'-phosphate biosynthesis III
AYR52_RS10765	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYR52_RS10765	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYR52_RS10765	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYR52_RS10990	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYR52_RS10990	PWY-6596	adenosine nucleotides degradation I
AYR52_RS10990	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYR52_RS11020	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AYR52_RS11025	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYR52_RS11080	PWY-6654	phosphopantothenate biosynthesis III
AYR52_RS11250	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYR52_RS11250	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AYR52_RS11250	PWY-6936	seleno-amino acid biosynthesis
AYR52_RS11250	PWY-702	L-methionine biosynthesis II
AYR52_RS11255	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYR52_RS11255	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYR52_RS11600	PWY-5101	L-isoleucine biosynthesis II
AYR52_RS11600	PWY-5103	L-isoleucine biosynthesis III
AYR52_RS11600	PWY-5104	L-isoleucine biosynthesis IV
AYR52_RS11600	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYR52_RS11610	PWY-5101	L-isoleucine biosynthesis II
AYR52_RS11610	PWY-5103	L-isoleucine biosynthesis III
AYR52_RS11610	PWY-5104	L-isoleucine biosynthesis IV
AYR52_RS11610	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AYR52_RS11610	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AYR52_RS11610	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AYR52_RS11610	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYR52_RS11615	PWY-5101	L-isoleucine biosynthesis II
AYR52_RS11615	PWY-5103	L-isoleucine biosynthesis III
AYR52_RS11615	PWY-5104	L-isoleucine biosynthesis IV
AYR52_RS11615	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AYR52_RS11615	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AYR52_RS11615	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AYR52_RS11615	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYR52_RS11625	PWY-5103	L-isoleucine biosynthesis III
AYR52_RS11625	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYR52_RS11645	PWY-5057	L-valine degradation II
AYR52_RS11645	PWY-5076	L-leucine degradation III
AYR52_RS11645	PWY-5078	L-isoleucine degradation II
AYR52_RS11645	PWY-5101	L-isoleucine biosynthesis II
AYR52_RS11645	PWY-5103	L-isoleucine biosynthesis III
AYR52_RS11645	PWY-5104	L-isoleucine biosynthesis IV
AYR52_RS11645	PWY-5108	L-isoleucine biosynthesis V
AYR52_RS11715	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AYR52_RS12405	PWY-5958	acridone alkaloid biosynthesis
AYR52_RS12405	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYR52_RS12405	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYR52_RS12500	PWY-6174	mevalonate pathway II (archaea)
AYR52_RS12500	PWY-7391	isoprene biosynthesis II (engineered)
AYR52_RS12500	PWY-7524	mevalonate pathway III (archaea)
AYR52_RS12500	PWY-922	mevalonate pathway I
AYR52_RS12805	PWY-6174	mevalonate pathway II (archaea)
AYR52_RS12805	PWY-7391	isoprene biosynthesis II (engineered)
AYR52_RS12805	PWY-7524	mevalonate pathway III (archaea)
AYR52_RS12805	PWY-922	mevalonate pathway I
