AYR52_RS00025	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS00035	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS00215	SM00855	Phosphoglycerate mutase family
AYR52_RS00230	SM00448	cheY-homologous receiver domain
AYR52_RS00230	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS00235	SM00387	Histidine kinase-like ATPases
AYR52_RS00235	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS00300	SM00513	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
AYR52_RS00390	SM00342	helix_turn_helix, arabinose operon control protein
AYR52_RS00410	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS00410	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AYR52_RS00440	SM00448	cheY-homologous receiver domain
AYR52_RS00440	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS00445	SM00387	Histidine kinase-like ATPases
AYR52_RS00445	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS00450	SM00936	Penicillin-binding protein 5, C-terminal domain 
AYR52_RS00495	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AYR52_RS00525	SM00855	Phosphoglycerate mutase family
AYR52_RS00560	SM00563	Phosphate acyltransferases
AYR52_RS00600	SM00420	helix_turn_helix, Deoxyribose operon repressor
AYR52_RS00600	SM01134	AYR52_RS00600
AYR52_RS00610	SM00530	Helix-turn-helix XRE-family like proteins 
AYR52_RS00645	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AYR52_RS00655	SM00347	helix_turn_helix multiple antibiotic resistance protein
AYR52_RS00665	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS00685	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS00700	SM00841	Elongation factor P, C-terminal
AYR52_RS00700	SM01185	AYR52_RS00700
AYR52_RS00720	SM00422	helix_turn_helix, mercury resistance
AYR52_RS00740	SM00919	Malic enzyme, NAD binding domain
AYR52_RS00740	SM01274	AYR52_RS00740
AYR52_RS00755	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS00800	SM00822	AYR52_RS00800
AYR52_RS00815	SM00422	helix_turn_helix, mercury resistance
AYR52_RS00885	SM00287	Bacterial SH3 domain homologues
AYR52_RS00885	SM00646	AYR52_RS00885
AYR52_RS00890	SM00387	Histidine kinase-like ATPases
AYR52_RS00890	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS00895	SM00448	cheY-homologous receiver domain
AYR52_RS00895	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS00920	SM00421	helix_turn_helix, Lux Regulon
AYR52_RS00920	SM00448	cheY-homologous receiver domain
AYR52_RS01060	SM01192	AYR52_RS01060
AYR52_RS01060	SM01193	AYR52_RS01060
AYR52_RS01065	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AYR52_RS01080	SM00072	Guanylate kinase homologues.
AYR52_RS01115	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS01120	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS01120	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AYR52_RS01170	SM00487	DEAD-like helicases superfamily
AYR52_RS01170	SM00490	helicase superfamily c-terminal domain
AYR52_RS01170	SM00982	AYR52_RS01170
AYR52_RS01170	SM01058	CarD-like/TRCF domain
AYR52_RS01180	SM00363	S4 RNA-binding domain
AYR52_RS01190	SM00316	Ribosomal protein S1-like RNA-binding domain
AYR52_RS01195	SM00977	TilS substrate C-terminal domain
AYR52_RS01205	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS01280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AYR52_RS01280	SM00866	AYR52_RS01280
AYR52_RS01340	SM00831	Cation transporter/ATPase, N-terminus
AYR52_RS01360	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS01365	SM00316	Ribosomal protein S1-like RNA-binding domain
AYR52_RS01365	SM00732	Likely ribonuclease with RNase H fold.
AYR52_RS01370	SM00731	SprT homologues.
AYR52_RS01390	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS01470	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS01475	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS01565	SM00878	Biotin carboxylase C-terminal domain
AYR52_RS01600	SM00855	Phosphoglycerate mutase family
AYR52_RS01625	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS01630	SM00670	Large family of predicted nucleotide-binding domains
AYR52_RS01645	SM00840	AYR52_RS01645
AYR52_RS01655	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AYR52_RS01705	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AYR52_RS01705	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AYR52_RS01715	SM00649	Ribosomal protein L11/L12
AYR52_RS01790	SM00257	Lysin motif
AYR52_RS01800	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS01810	SM00493	AYR52_RS01810
AYR52_RS01820	SM00487	DEAD-like helicases superfamily
AYR52_RS01820	SM00490	helicase superfamily c-terminal domain
AYR52_RS02090	SM00641	Glycosyl hydrolases family 25
AYR52_RS02135	SM00870	AYR52_RS02135
AYR52_RS02170	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS02175	SM00881	CoA binding domain
AYR52_RS02185	SM00883	Chaperonin 10 Kd subunit
AYR52_RS02210	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AYR52_RS02210	SM00534	ATPase domain of DNA mismatch repair MUTS family
AYR52_RS02215	SM00853	MutL C terminal dimerisation domain
AYR52_RS02215	SM01340	AYR52_RS02215
AYR52_RS02230	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AYR52_RS02235	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS02250	SM01323	AYR52_RS02250
AYR52_RS02275	SM00116	Domain in cystathionine beta-synthase and other proteins.
AYR52_RS02285	SM00487	DEAD-like helicases superfamily
AYR52_RS02285	SM00490	helicase superfamily c-terminal domain
AYR52_RS02290	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AYR52_RS02300	SM00732	Likely ribonuclease with RNase H fold.
AYR52_RS02320	SM00463	Small MutS-related domain
AYR52_RS02320	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AYR52_RS02320	SM00534	ATPase domain of DNA mismatch repair MUTS family
AYR52_RS02370	SM00905	Dihydroneopterin aldolase
AYR52_RS02395	SM00529	Helix-turn-helix diphteria tox regulatory element
AYR52_RS02395	SM00899	AYR52_RS02395
AYR52_RS02465	SM00354	helix_turn _helix lactose operon repressor
AYR52_RS02505	SM01022	AYR52_RS02505
AYR52_RS02525	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AYR52_RS02530	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AYR52_RS02645	SM00316	Ribosomal protein S1-like RNA-binding domain
AYR52_RS02795	SM00014	Acid phosphatase homologues
AYR52_RS02810	SM00363	S4 RNA-binding domain
AYR52_RS02840	SM00836	DALR anticodon binding domain
AYR52_RS02840	SM01016	Arginyl tRNA synthetase N terminal dom
AYR52_RS02905	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS02940	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS02940	SM00843	AYR52_RS02940
AYR52_RS02955	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AYR52_RS02955	SM00474	3'-5' exonuclease
AYR52_RS02955	SM00475	5'-3' exonuclease
AYR52_RS02955	SM00482	DNA polymerase A domain
AYR52_RS02960	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AYR52_RS02960	SM01232	AYR52_RS02960
AYR52_RS02985	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AYR52_RS03010	SM00829	Enoylreductase
AYR52_RS03025	SM01103	AYR52_RS03025
AYR52_RS03035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AYR52_RS03065	SM01350	AYR52_RS03065
AYR52_RS03070	SM00448	cheY-homologous receiver domain
AYR52_RS03070	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS03075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AYR52_RS03075	SM00387	Histidine kinase-like ATPases
AYR52_RS03075	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS03090	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AYR52_RS03110	SM00873	B3/4 domain
AYR52_RS03110	SM00874	tRNA synthetase B5 domain
AYR52_RS03110	SM00896	Ferredoxin-fold anticodon binding domain
AYR52_RS03135	SM00387	Histidine kinase-like ATPases
AYR52_RS03140	SM00421	helix_turn_helix, Lux Regulon
AYR52_RS03140	SM00448	cheY-homologous receiver domain
AYR52_RS03195	SM00450	Rhodanese Homology Domain
AYR52_RS03215	SM00422	helix_turn_helix, mercury resistance
AYR52_RS03220	SM01230	AYR52_RS03220
AYR52_RS03245	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
AYR52_RS03245	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
AYR52_RS03295	SM01117	AYR52_RS03295
AYR52_RS03320	SM00841	Elongation factor P, C-terminal
AYR52_RS03320	SM01185	AYR52_RS03320
AYR52_RS03380	SM00072	Guanylate kinase homologues.
AYR52_RS03385	SM01409	AYR52_RS03385
AYR52_RS03395	SM00487	DEAD-like helicases superfamily
AYR52_RS03395	SM00490	helicase superfamily c-terminal domain
AYR52_RS03410	SM00331	Sigma factor PP2C-like phosphatases
AYR52_RS03410	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
AYR52_RS03415	SM00220	Serine/Threonine protein kinases, catalytic domain
AYR52_RS03415	SM00740	AYR52_RS03415
AYR52_RS03430	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
AYR52_RS03450	SM01120	AYR52_RS03450
AYR52_RS03450	SM01121	AYR52_RS03450
AYR52_RS03455	SM00487	DEAD-like helicases superfamily
AYR52_RS03455	SM00490	helicase superfamily c-terminal domain
AYR52_RS03470	SM00358	Double-stranded RNA binding motif
AYR52_RS03470	SM00535	Ribonuclease III family
AYR52_RS03475	SM00968	SMC proteins Flexible Hinge Domain
AYR52_RS03485	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS03485	SM00962	SRP54-type protein, GTPase domain
AYR52_RS03485	SM00963	SRP54-type protein, helical bundle domain
AYR52_RS03515	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS03515	SM00962	SRP54-type protein, GTPase domain
AYR52_RS03515	SM00963	SRP54-type protein, helical bundle domain
AYR52_RS03535	SM00422	helix_turn_helix, mercury resistance
AYR52_RS03565	SM00829	Enoylreductase
AYR52_RS03685	SM00530	Helix-turn-helix XRE-family like proteins 
AYR52_RS03715	SM00422	helix_turn_helix, mercury resistance
AYR52_RS03775	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS03780	SM01266	AYR52_RS03780
AYR52_RS03805	SM00966	SpoVT / AbrB like domain 
AYR52_RS03930	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS03970	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AYR52_RS03970	SM00245	tail specific protease
AYR52_RS04005	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AYR52_RS04005	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AYR52_RS04005	SM00493	AYR52_RS04005
AYR52_RS04025	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS04025	SM01086	C-terminal, D2-small domain, of ClpB protein
AYR52_RS04035	SM01207	AYR52_RS04035
AYR52_RS04040	SM00387	Histidine kinase-like ATPases
AYR52_RS04040	SM00433	TopoisomeraseII
AYR52_RS04045	SM00434	DNA Topoisomerase IV
AYR52_RS04070	SM01131	AYR52_RS04070
AYR52_RS04105	SM00850	LytTr DNA-binding domain
AYR52_RS04125	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AYR52_RS04130	SM00851	MGS-like domain
AYR52_RS04130	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AYR52_RS04130	SM01209	AYR52_RS04130
AYR52_RS04135	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AYR52_RS04160	SM00363	S4 RNA-binding domain
AYR52_RS04170	SM00986	Uracil DNA glycosylase superfamily
AYR52_RS04170	SM00987	UreE urease accessory protein, C-terminal domain 
AYR52_RS04180	SM00357	Cold shock protein domain
AYR52_RS04245	SM00478	endonuclease III
AYR52_RS04270	SM00479	AYR52_RS04270
AYR52_RS04270	SM00487	DEAD-like helicases superfamily
AYR52_RS04270	SM00491	AYR52_RS04270
AYR52_RS04320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AYR52_RS04330	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS04335	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AYR52_RS04420	SM00829	Enoylreductase
AYR52_RS04470	SM00028	Tetratricopeptide repeats
AYR52_RS04475	SM00411	bacterial (prokaryotic) histone like domain
AYR52_RS04485	SM00316	Ribosomal protein S1-like RNA-binding domain
AYR52_RS04495	SM00257	Lysin motif
AYR52_RS04500	SM00487	DEAD-like helicases superfamily
AYR52_RS04500	SM00490	helicase superfamily c-terminal domain
AYR52_RS04515	SM00363	S4 RNA-binding domain
AYR52_RS04545	SM00316	Ribosomal protein S1-like RNA-binding domain
AYR52_RS04565	SM00481	DNA polymerase alpha chain like domain
AYR52_RS04575	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS04575	SM01086	C-terminal, D2-small domain, of ClpB protein
AYR52_RS04600	SM00400	zinc finger
AYR52_RS04600	SM00493	AYR52_RS04600
AYR52_RS04665	SM00518	AP endonuclease family 2
AYR52_RS04725	SM00287	Bacterial SH3 domain homologues
AYR52_RS04725	SM00646	AYR52_RS04725
AYR52_RS04750	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AYR52_RS04750	SM00954	Region found in RelA / SpoT proteins
AYR52_RS04820	SM00047	Lysozyme subfamily 2
AYR52_RS04845	SM00838	Elongation factor G C-terminus
AYR52_RS04850	SM00271	DnaJ molecular chaperone homology domain
AYR52_RS04885	SM00729	Elongator protein 3, MiaB family, Radical SAM
AYR52_RS04890	SM00904	Riboflavin kinase
AYR52_RS04920	SM00316	Ribosomal protein S1-like RNA-binding domain
AYR52_RS04920	SM00322	K homology RNA-binding domain
AYR52_RS04930	SM00479	AYR52_RS04930
AYR52_RS04930	SM00481	DNA polymerase alpha chain like domain
AYR52_RS04945	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AYR52_RS05000	SM00563	Phosphate acyltransferases
AYR52_RS05095	SM00420	helix_turn_helix, Deoxyribose operon repressor
AYR52_RS05095	SM01134	AYR52_RS05095
AYR52_RS05115	SM00465	GIY-YIG type nucleases (URI domain)
AYR52_RS05120	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS05125	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS05155	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS05155	SM00994	ClpX C4-type zinc finger
AYR52_RS05155	SM01086	C-terminal, D2-small domain, of ClpB protein
AYR52_RS05175	SM00849	Metallo-beta-lactamase superfamily
AYR52_RS05180	SM01130	AYR52_RS05180
AYR52_RS05185	SM01387	AYR52_RS05185
AYR52_RS05200	SM00849	Metallo-beta-lactamase superfamily
AYR52_RS05210	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AYR52_RS05240	SM00878	Biotin carboxylase C-terminal domain
AYR52_RS05260	SM00838	Elongation factor G C-terminus
AYR52_RS05295	SM00849	Metallo-beta-lactamase superfamily
AYR52_RS05300	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AYR52_RS05305	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS05310	SM00028	Tetratricopeptide repeats
AYR52_RS05315	SM00855	Phosphoglycerate mutase family
AYR52_RS05380	SM00363	S4 RNA-binding domain
AYR52_RS05400	SM00864	Tubulin/FtsZ family, GTPase domain
AYR52_RS05400	SM00865	Tubulin/FtsZ family, C-terminal domain
AYR52_RS05405	SM00842	Cell division protein FtsA
AYR52_RS05430	SM00740	AYR52_RS05430
AYR52_RS05470	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS05475	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS05510	SM00357	Cold shock protein domain
AYR52_RS05535	SM00981	AYR52_RS05535
AYR52_RS05550	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AYR52_RS05555	SM00363	S4 RNA-binding domain
AYR52_RS05555	SM01390	AYR52_RS05555
AYR52_RS05580	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS05660	SM00861	Transketolase, pyrimidine binding domain
AYR52_RS05715	SM00257	Lysin motif
AYR52_RS05715	SM00641	Glycosyl hydrolases family 25
AYR52_RS05950	SM00990	AYR52_RS05950
AYR52_RS06000	SM00530	Helix-turn-helix XRE-family like proteins 
AYR52_RS06005	SM00530	Helix-turn-helix XRE-family like proteins 
AYR52_RS06050	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06065	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06065	SM00930	AYR52_RS06065
AYR52_RS06080	SM01234	AYR52_RS06080
AYR52_RS06110	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06170	SM00937	AYR52_RS06170
AYR52_RS06195	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06225	SM00357	Cold shock protein domain
AYR52_RS06305	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AYR52_RS06305	SM00387	Histidine kinase-like ATPases
AYR52_RS06305	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS06310	SM00448	cheY-homologous receiver domain
AYR52_RS06310	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS06510	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06515	SM00829	Enoylreductase
AYR52_RS06535	SM00479	AYR52_RS06535
AYR52_RS06555	SM00986	Uracil DNA glycosylase superfamily
AYR52_RS06555	SM00987	UreE urease accessory protein, C-terminal domain 
AYR52_RS06575	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS06575	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AYR52_RS06580	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06590	SM00316	Ribosomal protein S1-like RNA-binding domain
AYR52_RS06590	SM00955	AYR52_RS06590
AYR52_RS06610	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AYR52_RS06665	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06670	SM00487	DEAD-like helicases superfamily
AYR52_RS06670	SM00490	helicase superfamily c-terminal domain
AYR52_RS06695	SM00028	Tetratricopeptide repeats
AYR52_RS06740	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06745	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06765	SM00387	Histidine kinase-like ATPases
AYR52_RS06765	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS06770	SM00448	cheY-homologous receiver domain
AYR52_RS06770	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS06780	SM00937	AYR52_RS06780
AYR52_RS06785	SM00957	SecA DEAD-like domain
AYR52_RS06785	SM00958	SecA preprotein cross-linking domain
AYR52_RS06800	SM00487	DEAD-like helicases superfamily
AYR52_RS06800	SM00490	helicase superfamily c-terminal domain
AYR52_RS06815	SM00322	K homology RNA-binding domain
AYR52_RS06815	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AYR52_RS06820	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS06825	SM00852	Probable molybdopterin binding domain
AYR52_RS06855	SM00843	AYR52_RS06855
AYR52_RS06865	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AYR52_RS06865	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AYR52_RS06865	SM00493	AYR52_RS06865
AYR52_RS06900	SM00257	Lysin motif
AYR52_RS06900	SM00641	Glycosyl hydrolases family 25
AYR52_RS07020	SM00507	HNH nucleases
AYR52_RS07070	SM00990	AYR52_RS07070
AYR52_RS07085	SM00942	Primase C terminal 1 (PriCT-1)
AYR52_RS07085	SM00943	Bifunctional DNA primase/polymerase, N-terminal
AYR52_RS07100	SM00487	DEAD-like helicases superfamily
AYR52_RS07100	SM00490	helicase superfamily c-terminal domain
AYR52_RS07115	SM01040	BRO family, N-terminal domain
AYR52_RS07120	SM00530	Helix-turn-helix XRE-family like proteins 
AYR52_RS07125	SM00530	Helix-turn-helix XRE-family like proteins 
AYR52_RS07150	SM01240	AYR52_RS07150
AYR52_RS07180	SM00116	Domain in cystathionine beta-synthase and other proteins.
AYR52_RS07180	SM00924	MgtE intracellular N domain
AYR52_RS07195	SM00954	Region found in RelA / SpoT proteins
AYR52_RS07200	SM01118	AYR52_RS07200
AYR52_RS07230	SM00849	Metallo-beta-lactamase superfamily
AYR52_RS07360	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS07360	SM01086	C-terminal, D2-small domain, of ClpB protein
AYR52_RS07380	SM01091	Transporter associated domain
AYR52_RS07450	SM00487	DEAD-like helicases superfamily
AYR52_RS07450	SM00490	helicase superfamily c-terminal domain
AYR52_RS07505	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AYR52_RS07510	SM00845	GatB domain
AYR52_RS07530	SM00292	breast cancer carboxy-terminal domain
AYR52_RS07530	SM00532	Ligase N family
AYR52_RS07540	SM00998	Adenylosuccinate lyase C-terminus
AYR52_RS07555	SM00047	Lysozyme subfamily 2
AYR52_RS07585	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS07590	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS07600	SM00662	RNA polymerases D
AYR52_RS07620	SM00316	Ribosomal protein S1-like RNA-binding domain
AYR52_RS07675	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AYR52_RS07680	SM01374	AYR52_RS07680
AYR52_RS07700	SM00322	K homology RNA-binding domain
AYR52_RS07715	SM01382	AYR52_RS07715
AYR52_RS07715	SM01383	AYR52_RS07715
AYR52_RS07735	SM01403	AYR52_RS07735
AYR52_RS07745	SM00838	Elongation factor G C-terminus
AYR52_RS07745	SM00889	Elongation factor G, domain IV
AYR52_RS07765	SM00663	RNA polymerase I subunit A N-terminus
AYR52_RS07785	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS07785	SM01086	C-terminal, D2-small domain, of ClpB protein
AYR52_RS07870	SM00100	Cyclic nucleotide-monophosphate binding domain
AYR52_RS07870	SM00419	helix_turn_helix, cAMP Regulatory protein
AYR52_RS07935	SM00341	Helicase and RNase D C-terminal
AYR52_RS07935	SM00487	DEAD-like helicases superfamily
AYR52_RS07935	SM00490	helicase superfamily c-terminal domain
AYR52_RS07935	SM00956	AYR52_RS07935
AYR52_RS07950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AYR52_RS07955	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS07995	SM00829	Enoylreductase
AYR52_RS08000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AYR52_RS08005	SM00829	Enoylreductase
AYR52_RS08015	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AYR52_RS08025	SM00347	helix_turn_helix multiple antibiotic resistance protein
AYR52_RS08050	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
AYR52_RS08055	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS08065	SM00387	Histidine kinase-like ATPases
AYR52_RS08065	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS08070	SM00448	cheY-homologous receiver domain
AYR52_RS08070	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS08080	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS08100	SM00530	Helix-turn-helix XRE-family like proteins 
AYR52_RS08210	SM00855	Phosphoglycerate mutase family
AYR52_RS08220	SM00116	Domain in cystathionine beta-synthase and other proteins.
AYR52_RS08250	SM01005	Alanine racemase, C-terminal domain
AYR52_RS08265	SM00487	DEAD-like helicases superfamily
AYR52_RS08265	SM00490	helicase superfamily c-terminal domain
AYR52_RS08310	SM00357	Cold shock protein domain
AYR52_RS08310	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS08310	SM00959	Rho termination factor, N-terminal domain
AYR52_RS08340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AYR52_RS08365	SM01400	AYR52_RS08365
AYR52_RS08400	SM00650	Ribosomal RNA adenine dimethylases
AYR52_RS08405	SM00493	AYR52_RS08405
AYR52_RS08445	SM00830	Chorismate mutase type II
AYR52_RS08485	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AYR52_RS08530	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AYR52_RS08535	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AYR52_RS08540	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AYR52_RS08590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AYR52_RS08590	SM00866	AYR52_RS08590
AYR52_RS08685	SM00116	Domain in cystathionine beta-synthase and other proteins.
AYR52_RS08685	SM01091	Transporter associated domain
AYR52_RS08695	SM00155	Phospholipase D. Active site motifs.
AYR52_RS08790	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS08805	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS08850	SM00892	DNA/RNA non-specific endonuclease
AYR52_RS08855	SM00257	Lysin motif
AYR52_RS08870	SM01120	AYR52_RS08870
AYR52_RS08885	SM01266	AYR52_RS08885
AYR52_RS08905	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS08910	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS08910	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AYR52_RS08980	SM01131	AYR52_RS08980
AYR52_RS08995	SM00257	Lysin motif
AYR52_RS09000	SM00347	helix_turn_helix multiple antibiotic resistance protein
AYR52_RS09020	SM00357	Cold shock protein domain
AYR52_RS09055	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09095	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09105	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AYR52_RS09105	SM00387	Histidine kinase-like ATPases
AYR52_RS09105	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS09110	SM00448	cheY-homologous receiver domain
AYR52_RS09110	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS09175	SM00822	AYR52_RS09175
AYR52_RS09190	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09205	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09245	SM00878	Biotin carboxylase C-terminal domain
AYR52_RS09255	SM00797	Allophanate hydrolase subunit 2
AYR52_RS09260	SM00796	Allophanate hydrolase subunit 1
AYR52_RS09305	SM00347	helix_turn_helix multiple antibiotic resistance protein
AYR52_RS09325	SM00871	Bacterial transcription activator, effector binding domain
AYR52_RS09350	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09400	SM00478	endonuclease III
AYR52_RS09425	SM01133	AYR52_RS09425
AYR52_RS09445	SM00470	ParB-like nuclease domain
AYR52_RS09455	SM00470	ParB-like nuclease domain
AYR52_RS09475	SM00829	Enoylreductase
AYR52_RS09485	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09500	SM01329	AYR52_RS09500
AYR52_RS09520	SM01057	Eukaryotic-type carbonic anhydrase
AYR52_RS09565	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09590	SM00244	prohibitin homologues
AYR52_RS09615	SM01329	AYR52_RS09615
AYR52_RS09650	SM00478	endonuclease III
AYR52_RS09665	SM00855	Phosphoglycerate mutase family
AYR52_RS09735	SM00047	Lysozyme subfamily 2
AYR52_RS09735	SM00257	Lysin motif
AYR52_RS09780	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09870	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS09900	SM00900	AYR52_RS09900
AYR52_RS09915	SM00342	helix_turn_helix, arabinose operon control protein
AYR52_RS09985	SM01001	AIR carboxylase
AYR52_RS09995	SM00419	helix_turn_helix, cAMP Regulatory protein
AYR52_RS10010	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS10040	SM00062	Bacterial periplasmic substrate-binding proteins
AYR52_RS10055	SM00347	helix_turn_helix multiple antibiotic resistance protein
AYR52_RS10090	SM00422	helix_turn_helix, mercury resistance
AYR52_RS10095	SM00986	Uracil DNA glycosylase superfamily
AYR52_RS10095	SM00987	UreE urease accessory protein, C-terminal domain 
AYR52_RS10135	SM00838	Elongation factor G C-terminus
AYR52_RS10135	SM00889	Elongation factor G, domain IV
AYR52_RS10170	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AYR52_RS10180	SM00849	Metallo-beta-lactamase superfamily
AYR52_RS10195	SM00091	PAS domain
AYR52_RS10195	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AYR52_RS10195	SM00387	Histidine kinase-like ATPases
AYR52_RS10195	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS10200	SM00448	cheY-homologous receiver domain
AYR52_RS10200	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS10240	SM00788	Adenylosuccinate synthetase
AYR52_RS10260	SM00267	diguanylate cyclase
AYR52_RS10280	SM00434	DNA Topoisomerase IV
AYR52_RS10285	SM00387	Histidine kinase-like ATPases
AYR52_RS10285	SM00433	TopoisomeraseII
AYR52_RS10300	SM00480	DNA polymerase III beta subunit
AYR52_RS10305	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS10305	SM00760	Bacterial dnaA protein helix-turn-helix domain
AYR52_RS10320	SM00393	Putative single-stranded nucleic acids-binding domain
AYR52_RS10320	SM01245	AYR52_RS10320
AYR52_RS10330	SM01228	AYR52_RS10330
AYR52_RS10335	SM00422	helix_turn_helix, mercury resistance
AYR52_RS10385	SM00488	AYR52_RS10385
AYR52_RS10385	SM00491	AYR52_RS10385
AYR52_RS10470	SM01400	AYR52_RS10470
AYR52_RS10505	SM00014	Acid phosphatase homologues
AYR52_RS10515	SM00387	Histidine kinase-like ATPases
AYR52_RS10515	SM00388	His Kinase A (phosphoacceptor) domain
AYR52_RS10520	SM00448	cheY-homologous receiver domain
AYR52_RS10520	SM00862	Transcriptional regulatory protein, C terminal
AYR52_RS10575	SM00347	helix_turn_helix multiple antibiotic resistance protein
AYR52_RS10625	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AYR52_RS10670	SM00855	Phosphoglycerate mutase family
AYR52_RS10695	SM00116	Domain in cystathionine beta-synthase and other proteins.
AYR52_RS10695	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS10715	SM01001	AIR carboxylase
AYR52_RS10735	SM01211	AYR52_RS10735
AYR52_RS10760	SM00798	AICARFT/IMPCHase bienzyme
AYR52_RS10760	SM00851	MGS-like domain
AYR52_RS10765	SM01209	AYR52_RS10765
AYR52_RS10765	SM01210	AYR52_RS10765
AYR52_RS10830	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS10835	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS10840	SM00116	Domain in cystathionine beta-synthase and other proteins.
AYR52_RS10945	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS10950	SM00530	Helix-turn-helix XRE-family like proteins 
AYR52_RS10990	SM00116	Domain in cystathionine beta-synthase and other proteins.
AYR52_RS10990	SM01240	AYR52_RS10990
AYR52_RS11015	SM00831	Cation transporter/ATPase, N-terminus
AYR52_RS11060	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS11140	SM00347	helix_turn_helix multiple antibiotic resistance protein
AYR52_RS11160	SM00899	AYR52_RS11160
AYR52_RS11170	SM01061	CAT RNA binding domain
AYR52_RS11235	SM00506	Appr-1"-p processing enzyme
AYR52_RS11255	SM01209	AYR52_RS11255
AYR52_RS11375	SM00829	Enoylreductase
AYR52_RS11405	SM00831	Cation transporter/ATPase, N-terminus
AYR52_RS11415	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS11470	SM00831	Cation transporter/ATPase, N-terminus
AYR52_RS11635	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS11685	SM00014	Acid phosphatase homologues
AYR52_RS11695	SM00257	Lysin motif
AYR52_RS11700	SM00382	ATPases associated with a variety of cellular activities
AYR52_RS11795	SM00382	ATPases associated with a variety of cellular activities
