locus-tag class description LDE01_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix LDE01_RS00005 PF11638 DnaA N-terminal domain LDE01_RS00005 PF00308 Bacterial dnaA protein LDE01_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LDE01_RS00010 PF02767 DNA polymerase III beta subunit, central domain LDE01_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LDE01_RS00020 PF02463 RecF/RecN/SMC N terminal domain LDE01_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDE01_RS00025 PF01751 Toprim domain LDE01_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus LDE01_RS00025 PF00204 DNA gyrase B LDE01_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller LDE01_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A LDE01_RS00035 PF01250 Ribosomal protein S6 LDE01_RS00040 PF00436 Single-strand binding protein family LDE01_RS00045 PF01084 Ribosomal protein S18 LDE01_RS00050 PF01368 DHH family LDE01_RS00050 PF02272 DHHA1 domain LDE01_RS00055 PF03948 Ribosomal protein L9, C-terminal domain LDE01_RS00055 PF01281 Ribosomal protein L9, N-terminal domain LDE01_RS00060 PF00772 DnaB-like helicase N terminal domain LDE01_RS00060 PF03796 DnaB-like helicase C terminal domain LDE01_RS00080 PF02308 MgtC family LDE01_RS00110 PF00005 ABC transporter LDE01_RS00110 PF08402 TOBE domain LDE01_RS00115 PF03412 Peptidase C39 family LDE01_RS00115 PF00005 ABC transporter LDE01_RS00115 PF00664 ABC transporter transmembrane region LDE01_RS00125 PF00005 ABC transporter LDE01_RS00130 PF03649 Uncharacterised protein family (UPF0014) LDE01_RS00185 PF05368 NmrA-like family LDE01_RS00190 PF01361 Tautomerase enzyme LDE01_RS00230 PF01238 Phosphomannose isomerase type I LDE01_RS00235 PF00480 ROK family LDE01_RS00250 PF04545 Sigma-70, region 4 LDE01_RS00250 PF04539 Sigma-70 region 3 LDE01_RS00250 PF04542 Sigma-70 region 2 LDE01_RS00255 PF00230 Major intrinsic protein LDE01_RS00260 PF00356 Bacterial regulatory proteins, lacI family LDE01_RS00260 PF13407 Periplasmic binding protein domain LDE01_RS00265 PF00128 Alpha amylase, catalytic domain LDE01_RS00275 PF00535 Glycosyl transferase family 2 LDE01_RS00290 PF02645 Uncharacterised protein, DegV family COG1307 LDE01_RS00305 PF00300 Histidine phosphatase superfamily (branch 1) LDE01_RS00315 PF02632 BioY family LDE01_RS00320 PF13419 Haloacid dehalogenase-like hydrolase LDE01_RS00330 PF03372 Endonuclease/Exonuclease/phosphatase family LDE01_RS00340 PF00056 lactate/malate dehydrogenase, NAD binding domain LDE01_RS00340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LDE01_RS00345 PF00248 Aldo/keto reductase family LDE01_RS00350 PF17975 Ribonucleotide reductase alpha domain LDE01_RS00365 PF01923 Cobalamin adenosyltransferase LDE01_RS00370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDE01_RS00370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDE01_RS00380 PF01327 Polypeptide deformylase LDE01_RS00390 PF02664 S-Ribosylhomocysteinase (LuxS) LDE01_RS00395 PF02770 Acyl-CoA dehydrogenase, middle domain LDE01_RS00395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LDE01_RS00395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LDE01_RS00400 PF00005 ABC transporter LDE01_RS00400 PF00664 ABC transporter transmembrane region LDE01_RS00405 PF00664 ABC transporter transmembrane region LDE01_RS00405 PF03412 Peptidase C39 family LDE01_RS00405 PF00005 ABC transporter LDE01_RS00410 PF00488 MutS domain V LDE01_RS00410 PF01713 Smr domain LDE01_RS00420 PF03466 LysR substrate binding domain LDE01_RS00420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS00425 PF01717 Cobalamin-independent synthase, Catalytic domain LDE01_RS00435 PF00480 ROK family LDE01_RS00440 PF00890 FAD binding domain LDE01_RS00440 PF14537 Cytochrome c3 LDE01_RS00445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS00445 PF03466 LysR substrate binding domain LDE01_RS00450 PF00056 lactate/malate dehydrogenase, NAD binding domain LDE01_RS00450 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LDE01_RS00455 PF07690 Major Facilitator Superfamily LDE01_RS00475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS00475 PF03466 LysR substrate binding domain LDE01_RS00480 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LDE01_RS00480 PF08501 Shikimate dehydrogenase substrate binding domain LDE01_RS00485 PF07690 Major Facilitator Superfamily LDE01_RS00490 PF01487 Type I 3-dehydroquinase LDE01_RS00515 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LDE01_RS00515 PF08501 Shikimate dehydrogenase substrate binding domain LDE01_RS00520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS00520 PF03466 LysR substrate binding domain LDE01_RS00525 PF04205 FMN-binding domain LDE01_RS00525 PF00890 FAD binding domain LDE01_RS00580 PF00486 Transcriptional regulatory protein, C terminal LDE01_RS00580 PF00072 Response regulator receiver domain LDE01_RS00585 PF13426 PAS domain LDE01_RS00585 PF00512 His Kinase A (phospho-acceptor) domain LDE01_RS00585 PF00672 HAMP domain LDE01_RS00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDE01_RS00600 PF00753 Metallo-beta-lactamase superfamily LDE01_RS00605 PF13180 PDZ domain LDE01_RS00610 PF02590 Predicted SPOUT methyltransferase LDE01_RS00635 PF00005 ABC transporter LDE01_RS00640 PF07690 Major Facilitator Superfamily LDE01_RS00650 PF00005 ABC transporter LDE01_RS00655 PF01435 Peptidase family M48 LDE01_RS00660 PF04011 LemA family LDE01_RS00665 PF03600 Citrate transporter LDE01_RS00680 PF00877 NlpC/P60 family LDE01_RS00690 PF00005 ABC transporter LDE01_RS00695 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS00700 PF02245 Methylpurine-DNA glycosylase (MPG) LDE01_RS00705 PF04343 Protein of unknown function, DUF488 LDE01_RS00710 PF02146 Sir2 family LDE01_RS00720 PF13396 Phospholipase_D-nuclease N-terminal LDE01_RS00720 PF13091 PLD-like domain LDE01_RS00730 PF00075 RNase H LDE01_RS00740 PF00535 Glycosyl transferase family 2 LDE01_RS00745 PF00561 alpha/beta hydrolase fold LDE01_RS00750 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LDE01_RS00750 PF14572 Phosphoribosyl synthetase-associated domain LDE01_RS00765 PF13545 Crp-like helix-turn-helix domain LDE01_RS00765 PF00027 Cyclic nucleotide-binding domain LDE01_RS00775 PF01820 D-ala D-ala ligase N-terminus LDE01_RS00775 PF07478 D-ala D-ala ligase C-terminus LDE01_RS00795 PF07859 alpha/beta hydrolase fold LDE01_RS00795 PF13472 GDSL-like Lipase/Acylhydrolase family LDE01_RS00810 PF00128 Alpha amylase, catalytic domain LDE01_RS00810 PF16657 Maltogenic Amylase, C-terminal domain LDE01_RS00815 PF00356 Bacterial regulatory proteins, lacI family LDE01_RS00820 PF00128 Alpha amylase, catalytic domain LDE01_RS00825 PF00128 Alpha amylase, catalytic domain LDE01_RS00825 PF02903 Alpha amylase, N-terminal ig-like domain LDE01_RS00830 PF03633 Glycosyl hydrolase family 65, C-terminal domain LDE01_RS00830 PF03632 Glycosyl hydrolase family 65 central catalytic domain LDE01_RS00830 PF03636 Glycosyl hydrolase family 65, N-terminal domain LDE01_RS00835 PF13419 Haloacid dehalogenase-like hydrolase LDE01_RS00840 PF00005 ABC transporter LDE01_RS00840 PF17912 MalK OB fold domain LDE01_RS00840 PF03459 TOBE domain LDE01_RS00850 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS00855 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS00860 PF13802 Galactose mutarotase-like LDE01_RS00860 PF01055 Glycosyl hydrolases family 31 LDE01_RS00860 PF13802 Galactose mutarotase-like LDE01_RS00860 PF01055 Glycosyl hydrolases family 31 LDE01_RS00875 PF01979 Amidohydrolase family LDE01_RS00880 PF05014 Nucleoside 2-deoxyribosyltransferase LDE01_RS00900 PF13350 Tyrosine phosphatase family LDE01_RS00905 PF00582 Universal stress protein family LDE01_RS00915 PF00005 ABC transporter LDE01_RS00920 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS00925 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS00930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS00945 PF00733 Asparagine synthase LDE01_RS00945 PF13537 Glutamine amidotransferase domain LDE01_RS00955 PF03477 ATP cone domain LDE01_RS00955 PF13597 Anaerobic ribonucleoside-triphosphate reductase LDE01_RS00965 PF01883 Iron-sulfur cluster assembly protein LDE01_RS00975 PF07690 Major Facilitator Superfamily LDE01_RS00985 PF05649 Peptidase family M13 LDE01_RS00985 PF01431 Peptidase family M13 LDE01_RS00990 PF02705 K+ potassium transporter LDE01_RS01025 PF01510 N-acetylmuramoyl-L-alanine amidase LDE01_RS01025 PF13457 GW (Gly-Tryp) dipeptide domain LDE01_RS01030 PF02254 TrkA-N domain LDE01_RS01030 PF00999 Sodium/hydrogen exchanger family LDE01_RS01030 PF02080 TrkA-C domain LDE01_RS01035 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LDE01_RS01045 PF00300 Histidine phosphatase superfamily (branch 1) LDE01_RS01055 PF02660 Glycerol-3-phosphate acyltransferase LDE01_RS01060 PF00884 Sulfatase LDE01_RS01075 PF00579 tRNA synthetases class I (W and Y) LDE01_RS01075 PF01479 S4 domain LDE01_RS01105 PF01966 HD domain LDE01_RS01115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS01120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS01125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS01130 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS01135 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS01135 PF12911 N-terminal TM domain of oligopeptide transport permease C LDE01_RS01140 PF00005 ABC transporter LDE01_RS01140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDE01_RS01145 PF00005 ABC transporter LDE01_RS01145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDE01_RS01150 PF03051 Peptidase C1-like family LDE01_RS01155 PF03051 Peptidase C1-like family LDE01_RS01160 PF00011 Hsp20/alpha crystallin family LDE01_RS01165 PF03449 Transcription elongation factor, N-terminal LDE01_RS01165 PF01272 Transcription elongation factor, GreA/GreB, C-term LDE01_RS01170 PF00709 Adenylosuccinate synthetase LDE01_RS01175 PF00478 IMP dehydrogenase / GMP reductase domain LDE01_RS01190 PF00860 Permease family LDE01_RS01195 PF00156 Phosphoribosyl transferase domain LDE01_RS01200 PF00478 IMP dehydrogenase / GMP reductase domain LDE01_RS01200 PF00571 CBS domain LDE01_RS01205 PF00117 Glutamine amidotransferase class-I LDE01_RS01205 PF02540 NAD synthase LDE01_RS01205 PF00958 GMP synthase C terminal domain LDE01_RS01210 PF00005 ABC transporter LDE01_RS01210 PF00664 ABC transporter transmembrane region LDE01_RS01210 PF03412 Peptidase C39 family LDE01_RS01220 PF00232 Glycosyl hydrolase family 1 LDE01_RS01240 PF00270 DEAD/DEAH box helicase LDE01_RS01240 PF17191 RecG wedge domain LDE01_RS01240 PF13749 Putative ATP-dependent DNA helicase recG C-terminal LDE01_RS01245 PF00324 Amino acid permease LDE01_RS01250 PF02574 Homocysteine S-methyltransferase LDE01_RS01265 PF17763 Glutaminase/Asparaginase C-terminal domain LDE01_RS01265 PF00710 Asparaginase, N-terminal LDE01_RS01275 PF01741 Large-conductance mechanosensitive channel, MscL LDE01_RS01285 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LDE01_RS01285 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LDE01_RS01285 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LDE01_RS01290 PF00857 Isochorismatase family LDE01_RS01340 PF00005 ABC transporter LDE01_RS01360 PF00579 tRNA synthetases class I (W and Y) LDE01_RS01365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDE01_RS01375 PF00690 Cation transporter/ATPase, N-terminus LDE01_RS01375 PF00689 Cation transporting ATPase, C-terminus LDE01_RS01380 PF09334 tRNA synthetases class I (M) LDE01_RS01380 PF08264 Anticodon-binding domain of tRNA LDE01_RS01380 PF01588 Putative tRNA binding domain LDE01_RS01385 PF01026 TatD related DNase LDE01_RS01390 PF13331 Domain of unknown function (DUF4093) LDE01_RS01390 PF01751 Toprim domain LDE01_RS01395 PF00398 Ribosomal RNA adenine dimethylase LDE01_RS01405 PF09182 Bacterial purine repressor, N-terminal LDE01_RS01405 PF00156 Phosphoribosyl transferase domain LDE01_RS01410 PF12804 MobA-like NTP transferase domain LDE01_RS01410 PF00132 Bacterial transferase hexapeptide (six repeats) LDE01_RS01420 PF14572 Phosphoribosyl synthetase-associated domain LDE01_RS01420 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LDE01_RS01425 PF01966 HD domain LDE01_RS01435 PF05066 HB1, ASXL, restriction endonuclease HTH domain LDE01_RS01440 PF00117 Glutamine amidotransferase class-I LDE01_RS01440 PF06418 CTP synthase N-terminus LDE01_RS01445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LDE01_RS01450 PF01197 Ribosomal protein L31 LDE01_RS01455 PF08245 Mur ligase middle domain LDE01_RS01455 PF02875 Mur ligase family, glutamate ligase domain LDE01_RS01455 PF01225 Mur ligase family, catalytic domain LDE01_RS01460 PF00271 Helicase conserved C-terminal domain LDE01_RS01460 PF00270 DEAD/DEAH box helicase LDE01_RS01465 PF01648 4'-phosphopantetheinyl transferase superfamily LDE01_RS01470 PF00842 Alanine racemase, C-terminal domain LDE01_RS01470 PF01168 Alanine racemase, N-terminal domain LDE01_RS01480 PF01195 Peptidyl-tRNA hydrolase LDE01_RS01485 PF02559 CarD-like/TRCF domain LDE01_RS01485 PF00270 DEAD/DEAH box helicase LDE01_RS01485 PF00271 Helicase conserved C-terminal domain LDE01_RS01485 PF03461 TRCF domain LDE01_RS01485 PF17757 UvrB interaction domain LDE01_RS01490 PF01479 S4 domain LDE01_RS01505 PF01171 PP-loop family LDE01_RS01510 PF00004 ATPase family associated with various cellular activities (AAA) LDE01_RS01510 PF17862 AAA+ lid domain LDE01_RS01510 PF06480 FtsH Extracellular LDE01_RS01510 PF01434 Peptidase family M41 LDE01_RS01515 PF01430 Hsp33 protein LDE01_RS01520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS01525 PF07687 Peptidase dimerisation domain LDE01_RS01525 PF01546 Peptidase family M20/M25/M40 LDE01_RS01530 PF01207 Dihydrouridine synthase (Dus) LDE01_RS01535 PF01336 OB-fold nucleic acid binding domain LDE01_RS01535 PF00152 tRNA synthetases class II (D, K and N) LDE01_RS01545 PF00990 Diguanylate cyclase, GGDEF domain LDE01_RS01555 PF01053 Cys/Met metabolism PLP-dependent enzyme LDE01_RS01580 PF13185 GAF domain LDE01_RS01585 PF10431 C-terminal, D2-small domain, of ClpB protein LDE01_RS01585 PF02861 Clp amino terminal domain, pathogenicity island component LDE01_RS01585 PF17871 AAA lid domain LDE01_RS01585 PF07724 AAA domain (Cdc48 subfamily) LDE01_RS01585 PF00004 ATPase family associated with various cellular activities (AAA) LDE01_RS01595 PF00562 RNA polymerase Rpb2, domain 6 LDE01_RS01595 PF04560 RNA polymerase Rpb2, domain 7 LDE01_RS01595 PF10385 RNA polymerase beta subunit external 1 domain LDE01_RS01595 PF04561 RNA polymerase Rpb2, domain 2 LDE01_RS01595 PF04565 RNA polymerase Rpb2, domain 3 LDE01_RS01595 PF04563 RNA polymerase beta subunit LDE01_RS01600 PF04997 RNA polymerase Rpb1, domain 1 LDE01_RS01600 PF00623 RNA polymerase Rpb1, domain 2 LDE01_RS01600 PF04983 RNA polymerase Rpb1, domain 3 LDE01_RS01600 PF04998 RNA polymerase Rpb1, domain 5 LDE01_RS01600 PF05000 RNA polymerase Rpb1, domain 4 LDE01_RS01615 PF00164 Ribosomal protein S12/S23 LDE01_RS01620 PF00177 Ribosomal protein S7p/S5e LDE01_RS01625 PF00009 Elongation factor Tu GTP binding domain LDE01_RS01625 PF03144 Elongation factor Tu domain 2 LDE01_RS01625 PF00679 Elongation factor G C-terminus LDE01_RS01625 PF03764 Elongation factor G, domain IV LDE01_RS01625 PF14492 Elongation Factor G, domain II LDE01_RS01630 PF00338 Ribosomal protein S10p/S20e LDE01_RS01635 PF00297 Ribosomal protein L3 LDE01_RS01640 PF00573 Ribosomal protein L4/L1 family LDE01_RS01645 PF00276 Ribosomal protein L23 LDE01_RS01650 PF00181 Ribosomal Proteins L2, RNA binding domain LDE01_RS01650 PF03947 Ribosomal Proteins L2, C-terminal domain LDE01_RS01655 PF00203 Ribosomal protein S19 LDE01_RS01660 PF00237 Ribosomal protein L22p/L17e LDE01_RS01665 PF00189 Ribosomal protein S3, C-terminal domain LDE01_RS01665 PF07650 KH domain LDE01_RS01670 PF00252 Ribosomal protein L16p/L10e LDE01_RS01675 PF00831 Ribosomal L29 protein LDE01_RS01680 PF00366 Ribosomal protein S17 LDE01_RS01685 PF00238 Ribosomal protein L14p/L23e LDE01_RS01690 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LDE01_RS01690 PF00467 KOW motif LDE01_RS01695 PF00673 ribosomal L5P family C-terminus LDE01_RS01695 PF00281 Ribosomal protein L5 LDE01_RS01700 PF00253 Ribosomal protein S14p/S29e LDE01_RS01705 PF00410 Ribosomal protein S8 LDE01_RS01710 PF00347 Ribosomal protein L6 LDE01_RS01715 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LDE01_RS01720 PF03719 Ribosomal protein S5, C-terminal domain LDE01_RS01720 PF00333 Ribosomal protein S5, N-terminal domain LDE01_RS01725 PF00327 Ribosomal protein L30p/L7e LDE01_RS01730 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LDE01_RS01735 PF00344 SecY translocase LDE01_RS01740 PF05191 Adenylate kinase, active site lid LDE01_RS01745 PF01176 Translation initiation factor 1A / IF-1 LDE01_RS01750 PF00444 Ribosomal protein L36 LDE01_RS01755 PF00416 Ribosomal protein S13/S18 LDE01_RS01760 PF00411 Ribosomal protein S11 LDE01_RS01765 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LDE01_RS01765 PF01000 RNA polymerase Rpb3/RpoA insert domain LDE01_RS01765 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LDE01_RS01770 PF01196 Ribosomal protein L17 LDE01_RS01775 PF00005 ABC transporter LDE01_RS01780 PF00005 ABC transporter LDE01_RS01785 PF02361 Cobalt transport protein LDE01_RS01790 PF01416 tRNA pseudouridine synthase LDE01_RS01795 PF00572 Ribosomal protein L13 LDE01_RS01800 PF00380 Ribosomal protein S9/S16 LDE01_RS01820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS01825 PF00293 NUDIX domain LDE01_RS01835 PF01161 Phosphatidylethanolamine-binding protein LDE01_RS01845 PF00155 Aminotransferase class I and II LDE01_RS01865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS01880 PF00392 Bacterial regulatory proteins, gntR family LDE01_RS01880 PF07702 UTRA domain LDE01_RS01885 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LDE01_RS01895 PF03808 Glycosyl transferase WecB/TagA/CpsF family LDE01_RS01910 PF02540 NAD synthase LDE01_RS01915 PF00690 Cation transporter/ATPase, N-terminus LDE01_RS01915 PF00689 Cation transporting ATPase, C-terminus LDE01_RS01925 PF00005 ABC transporter LDE01_RS01930 PF10263 SprT-like family LDE01_RS01945 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LDE01_RS01945 PF13457 GW (Gly-Tryp) dipeptide domain LDE01_RS01950 PF00580 UvrD/REP helicase N-terminal domain LDE01_RS01950 PF13361 UvrD-like helicase C-terminal domain LDE01_RS01955 PF01653 NAD-dependent DNA ligase adenylation domain LDE01_RS01955 PF12826 Helix-hairpin-helix motif LDE01_RS01955 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LDE01_RS01955 PF03120 NAD-dependent DNA ligase OB-fold domain LDE01_RS01955 PF00533 BRCA1 C Terminus (BRCT) domain LDE01_RS01960 PF07537 CamS sex pheromone cAM373 precursor LDE01_RS01965 PF02686 Glu-tRNAGln amidotransferase C subunit LDE01_RS01970 PF01425 Amidase LDE01_RS01975 PF02934 GatB/GatE catalytic domain LDE01_RS01975 PF02637 GatB domain LDE01_RS01980 PF00781 Diacylglycerol kinase catalytic domain LDE01_RS01985 PF06736 Protein of unknown function (DUF1211) LDE01_RS01990 PF01938 TRAM domain LDE01_RS01990 PF05958 tRNA (Uracil-5-)-methyltransferase LDE01_RS02000 PF00194 Eukaryotic-type carbonic anhydrase LDE01_RS02025 PF13936 Helix-turn-helix domain LDE01_RS02030 PF00403 Heavy-metal-associated domain LDE01_RS02045 PF00027 Cyclic nucleotide-binding domain LDE01_RS02045 PF13545 Crp-like helix-turn-helix domain LDE01_RS02050 PF05525 Branched-chain amino acid transport protein LDE01_RS02080 PF06993 Protein of unknown function (DUF1304) LDE01_RS02085 PF01037 Lrp/AsnC ligand binding domain LDE01_RS02090 PF01380 SIS domain LDE01_RS02100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDE01_RS02100 PF02378 Phosphotransferase system, EIIC LDE01_RS02105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDE01_RS02110 PF08125 Mannitol dehydrogenase C-terminal domain LDE01_RS02110 PF01232 Mannitol dehydrogenase Rossmann domain LDE01_RS02115 PF00311 Phosphoenolpyruvate carboxylase LDE01_RS02120 PF00005 ABC transporter LDE01_RS02120 PF12848 ABC transporter LDE01_RS02145 PF07690 Major Facilitator Superfamily LDE01_RS02150 PF01027 Inhibitor of apoptosis-promoting Bax1 LDE01_RS02155 PF01177 Asp/Glu/Hydantoin racemase LDE01_RS02160 PF03577 Peptidase family C69 LDE01_RS02175 PF00485 Phosphoribulokinase / Uridine kinase family LDE01_RS02180 PF00485 Phosphoribulokinase / Uridine kinase family LDE01_RS02185 PF00005 ABC transporter LDE01_RS02190 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDE01_RS02195 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS02200 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS02205 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDE01_RS02215 PF13089 Polyphosphate kinase N-terminal domain LDE01_RS02215 PF02503 Polyphosphate kinase middle domain LDE01_RS02215 PF13090 Polyphosphate kinase C-terminal domain 2 LDE01_RS02215 PF17941 Polyphosphate kinase C-terminal domain 1 LDE01_RS02240 PF00294 pfkB family carbohydrate kinase LDE01_RS02240 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LDE01_RS02245 PF00834 Ribulose-phosphate 3 epimerase family LDE01_RS02250 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LDE01_RS02255 PF01156 Inosine-uridine preferring nucleoside hydrolase LDE01_RS02260 PF00392 Bacterial regulatory proteins, gntR family LDE01_RS02260 PF07702 UTRA domain LDE01_RS02265 PF09363 XFP C-terminal domain LDE01_RS02265 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase LDE01_RS02265 PF09364 XFP N-terminal domain LDE01_RS02275 PF03471 Transporter associated domain LDE01_RS02275 PF01595 Cyclin M transmembrane N-terminal domain LDE01_RS02275 PF00571 CBS domain LDE01_RS02280 PF11734 TilS substrate C-terminal domain LDE01_RS02280 PF00156 Phosphoribosyl transferase domain LDE01_RS02280 PF01171 PP-loop family LDE01_RS02285 PF13520 Amino acid permease LDE01_RS02295 PF00271 Helicase conserved C-terminal domain LDE01_RS02295 PF00270 DEAD/DEAH box helicase LDE01_RS02300 PF02378 Phosphotransferase system, EIIC LDE01_RS02320 PF00860 Permease family LDE01_RS02325 PF06838 Methionine gamma-lyase LDE01_RS02330 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LDE01_RS02330 PF01276 Orn/Lys/Arg decarboxylase, major domain LDE01_RS02330 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LDE01_RS02340 PF13520 Amino acid permease LDE01_RS02350 PF02350 UDP-N-acetylglucosamine 2-epimerase LDE01_RS02360 PF00258 Flavodoxin LDE01_RS02365 PF00557 Metallopeptidase family M24 LDE01_RS02370 PF03631 Virulence factor BrkB LDE01_RS02375 PF00483 Nucleotidyl transferase LDE01_RS02390 PF01938 TRAM domain LDE01_RS02390 PF05958 tRNA (Uracil-5-)-methyltransferase LDE01_RS02395 PF02631 RecX family LDE01_RS02410 PF00571 CBS domain LDE01_RS02410 PF01595 Cyclin M transmembrane N-terminal domain LDE01_RS02410 PF03471 Transporter associated domain LDE01_RS02415 PF16658 Class II release factor RF3, C-terminal domain LDE01_RS02415 PF00009 Elongation factor Tu GTP binding domain LDE01_RS02425 PF07731 Multicopper oxidase LDE01_RS02425 PF07732 Multicopper oxidase LDE01_RS02435 PF00004 ATPase family associated with various cellular activities (AAA) LDE01_RS02435 PF10431 C-terminal, D2-small domain, of ClpB protein LDE01_RS02435 PF07724 AAA domain (Cdc48 subfamily) LDE01_RS02435 PF17871 AAA lid domain LDE01_RS02445 PF00381 PTS HPr component phosphorylation site LDE01_RS02450 PF00391 PEP-utilising enzyme, mobile domain LDE01_RS02450 PF02896 PEP-utilising enzyme, TIM barrel domain LDE01_RS02450 PF05524 PEP-utilising enzyme, N-terminal LDE01_RS02455 PF03960 ArsC family LDE01_RS02460 PF05389 Negative regulator of genetic competence (MecA) LDE01_RS02465 PF07499 RuvA, C-terminal domain LDE01_RS02490 PF04607 Region found in RelA / SpoT proteins LDE01_RS02495 PF01513 ATP-NAD kinase LDE01_RS02500 PF00849 RNA pseudouridylate synthase LDE01_RS02510 PF02673 Bacitracin resistance protein BacA LDE01_RS02515 PF10282 Lactonase, 7-bladed beta-propeller LDE01_RS02525 PF01594 AI-2E family transporter LDE01_RS02530 PF00588 SpoU rRNA Methylase family LDE01_RS02540 PF09397 Ftsk gamma domain LDE01_RS02540 PF17854 FtsK alpha domain LDE01_RS02540 PF01580 FtsK/SpoIIIE family LDE01_RS02560 PF13464 Domain of unknown function (DUF4115) LDE01_RS02565 PF01066 CDP-alcohol phosphatidyltransferase LDE01_RS02570 PF00154 recA bacterial DNA recombination protein LDE01_RS02575 PF12072 Domain of unknown function (DUF3552) LDE01_RS02575 PF00013 KH domain LDE01_RS02575 PF01966 HD domain LDE01_RS02580 PF00953 Glycosyl transferase family 4 LDE01_RS02585 PF07499 RuvA, C-terminal domain LDE01_RS02590 PF01205 Uncharacterized protein family UPF0029 LDE01_RS02590 PF09186 Domain of unknown function (DUF1949) LDE01_RS02595 PF00271 Helicase conserved C-terminal domain LDE01_RS02595 PF04851 Type III restriction enzyme, res subunit LDE01_RS02605 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LDE01_RS02605 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LDE01_RS02610 PF01043 SecA preprotein cross-linking domain LDE01_RS02610 PF07517 SecA DEAD-like domain LDE01_RS02610 PF07516 SecA Wing and Scaffold domain LDE01_RS02625 PF07475 HPr Serine kinase C-terminal domain LDE01_RS02625 PF02603 HPr Serine kinase N terminus LDE01_RS02630 PF01790 Prolipoprotein diacylglyceryl transferase LDE01_RS02635 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LDE01_RS02635 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LDE01_RS02640 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDE01_RS02645 PF04851 Type III restriction enzyme, res subunit LDE01_RS02645 PF12344 Ultra-violet resistance protein B LDE01_RS02645 PF02151 UvrB/uvrC motif LDE01_RS02645 PF17757 UvrB interaction domain LDE01_RS02645 PF00271 Helicase conserved C-terminal domain LDE01_RS02650 PF17755 UvrA DNA-binding domain LDE01_RS02650 PF00005 ABC transporter LDE01_RS02650 PF17760 UvrA interaction domain LDE01_RS02665 PF03576 Peptidase family S58 LDE01_RS02670 PF03668 P-loop ATPase protein family LDE01_RS02675 PF01933 Uncharacterised protein family UPF0052 LDE01_RS02680 PF14527 WhiA LAGLIDADG-like domain LDE01_RS02680 PF02650 WhiA C-terminal HTH domain LDE01_RS02680 PF10298 WhiA N-terminal LAGLIDADG-like domain LDE01_RS02685 PF00574 Clp protease LDE01_RS02695 PF13936 Helix-turn-helix domain LDE01_RS02705 PF02653 Branched-chain amino acid transport system / permease component LDE01_RS02710 PF00005 ABC transporter LDE01_RS02720 PF04198 Putative sugar-binding domain LDE01_RS02725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LDE01_RS02725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LDE01_RS02730 PF00162 Phosphoglycerate kinase LDE01_RS02735 PF00121 Triosephosphate isomerase LDE01_RS02760 PF03167 Uracil DNA glycosylase superfamily LDE01_RS02765 PF01515 Phosphate acetyl/butaryl transferase LDE01_RS02770 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LDE01_RS02780 PF01565 FAD binding domain LDE01_RS02780 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LDE01_RS02785 PF08402 TOBE domain LDE01_RS02785 PF00005 ABC transporter LDE01_RS02795 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS02800 PF13416 Bacterial extracellular solute-binding protein LDE01_RS02805 PF02457 DisA bacterial checkpoint controller nucleotide-binding LDE01_RS02815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDE01_RS02815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDE01_RS02815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDE01_RS02815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDE01_RS02825 PF00144 Beta-lactamase LDE01_RS02830 PF03965 Penicillinase repressor LDE01_RS02840 PF00403 Heavy-metal-associated domain LDE01_RS02845 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDE01_RS02850 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LDE01_RS02860 PF00990 Diguanylate cyclase, GGDEF domain LDE01_RS02870 PF01451 Low molecular weight phosphotyrosine protein phosphatase LDE01_RS02880 PF13520 Amino acid permease LDE01_RS02885 PF01625 Peptide methionine sulfoxide reductase LDE01_RS02895 PF01297 Zinc-uptake complex component A periplasmic LDE01_RS02915 PF01709 Transcriptional regulator LDE01_RS02920 PF00437 Type II/IV secretion system protein LDE01_RS02925 PF00482 Type II secretion system (T2SS), protein F LDE01_RS02930 PF07963 Prokaryotic N-terminal methylation motif LDE01_RS02930 PF08334 Type II secretion system (T2SS), protein G LDE01_RS02950 PF02384 N-6 DNA Methylase LDE01_RS02955 PF00871 Acetokinase family LDE01_RS02965 PF00072 Response regulator receiver domain LDE01_RS02965 PF00486 Transcriptional regulatory protein, C terminal LDE01_RS02970 PF00512 His Kinase A (phospho-acceptor) domain LDE01_RS02970 PF00672 HAMP domain LDE01_RS02970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDE01_RS02975 PF03050 Transposase IS66 family LDE01_RS02975 PF13005 zinc-finger binding domain of transposase IS66 LDE01_RS02975 PF13817 IS66 C-terminal element LDE01_RS02975 PF13007 Transposase C of IS166 homeodomain LDE01_RS02995 PF00884 Sulfatase LDE01_RS03005 PF00342 Phosphoglucose isomerase LDE01_RS03025 PF00144 Beta-lactamase LDE01_RS03035 PF08353 Domain of unknown function (DUF1727) LDE01_RS03035 PF08245 Mur ligase middle domain LDE01_RS03040 PF00265 Thymidine kinase LDE01_RS03045 PF03462 PCRF domain LDE01_RS03045 PF00472 RF-1 domain LDE01_RS03050 PF05175 Methyltransferase small domain LDE01_RS03055 PF03481 Putative GTP-binding controlling metal-binding LDE01_RS03055 PF01300 Telomere recombination LDE01_RS03065 PF00119 ATP synthase A chain LDE01_RS03070 PF00137 ATP synthase subunit C LDE01_RS03075 PF00430 ATP synthase B/B' CF(0) LDE01_RS03080 PF00213 ATP synthase delta (OSCP) subunit LDE01_RS03085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDE01_RS03085 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDE01_RS03085 PF00306 ATP synthase alpha/beta chain, C terminal domain LDE01_RS03090 PF00231 ATP synthase LDE01_RS03095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LDE01_RS03095 PF02874 ATP synthase alpha/beta family, beta-barrel domain LDE01_RS03100 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LDE01_RS03100 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LDE01_RS03115 PF01809 Putative membrane protein insertion efficiency factor LDE01_RS03125 PF01098 Cell cycle protein LDE01_RS03130 PF00582 Universal stress protein family LDE01_RS03140 PF12002 MgsA AAA+ ATPase C terminal LDE01_RS03140 PF16193 AAA C-terminal domain LDE01_RS03140 PF05496 Holliday junction DNA helicase RuvB P-loop domain LDE01_RS03165 PF00163 Ribosomal protein S4/S9 N-terminal domain LDE01_RS03165 PF01479 S4 domain LDE01_RS03170 PF06160 Septation ring formation regulator, EzrA LDE01_RS03175 PF00266 Aminotransferase class-V LDE01_RS03180 PF02568 Thiamine biosynthesis protein (ThiI) LDE01_RS03180 PF02926 THUMP domain LDE01_RS03185 PF01479 S4 domain LDE01_RS03185 PF00849 RNA pseudouridylate synthase LDE01_RS03190 PF10458 Valyl tRNA synthetase tRNA binding arm LDE01_RS03190 PF00133 tRNA synthetases class I (I, L, M and V) LDE01_RS03190 PF08264 Anticodon-binding domain of tRNA LDE01_RS03195 PF08245 Mur ligase middle domain LDE01_RS03195 PF02875 Mur ligase family, glutamate ligase domain LDE01_RS03200 PF13419 Haloacid dehalogenase-like hydrolase LDE01_RS03205 PF04002 RadC-like JAB domain LDE01_RS03235 PF02381 MraZ protein, putative antitoxin-like LDE01_RS03240 PF01795 MraW methylase family LDE01_RS03250 PF00905 Penicillin binding protein transpeptidase domain LDE01_RS03250 PF03793 PASTA domain LDE01_RS03250 PF03717 Penicillin-binding Protein dimerisation domain LDE01_RS03255 PF00953 Glycosyl transferase family 4 LDE01_RS03255 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LDE01_RS03260 PF02875 Mur ligase family, glutamate ligase domain LDE01_RS03260 PF08245 Mur ligase middle domain LDE01_RS03265 PF03033 Glycosyltransferase family 28 N-terminal domain LDE01_RS03265 PF04101 Glycosyltransferase family 28 C-terminal domain LDE01_RS03270 PF08478 POTRA domain, FtsQ-type LDE01_RS03270 PF03799 Cell division protein FtsQ LDE01_RS03275 PF11983 Membrane-attachment and polymerisation-promoting switch LDE01_RS03275 PF02491 SHS2 domain inserted in FTSA LDE01_RS03280 PF00091 Tubulin/FtsZ family, GTPase domain LDE01_RS03280 PF12327 FtsZ family, C-terminal domain LDE01_RS03285 PF04472 Cell division protein SepF LDE01_RS03290 PF02325 YGGT family LDE01_RS03300 PF08264 Anticodon-binding domain of tRNA LDE01_RS03300 PF00133 tRNA synthetases class I (I, L, M and V) LDE01_RS03300 PF06827 Zinc finger found in FPG and IleRS LDE01_RS03305 PF00313 'Cold-shock' DNA-binding domain LDE01_RS03320 PF01048 Phosphorylase superfamily LDE01_RS03325 PF00266 Aminotransferase class-V LDE01_RS03340 PF00300 Histidine phosphatase superfamily (branch 1) LDE01_RS03350 PF14490 Helix-hairpin-helix containing domain LDE01_RS03350 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LDE01_RS03350 PF13538 UvrD-like helicase C-terminal domain LDE01_RS03360 PF17770 Ribonuclease J C-terminal domain LDE01_RS03360 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LDE01_RS03360 PF00753 Metallo-beta-lactamase superfamily LDE01_RS03365 PF07288 Protein of unknown function (DUF1447) LDE01_RS03370 PF01327 Polypeptide deformylase LDE01_RS03375 PF00009 Elongation factor Tu GTP binding domain LDE01_RS03375 PF00679 Elongation factor G C-terminus LDE01_RS03375 PF14492 Elongation Factor G, domain II LDE01_RS03375 PF03144 Elongation factor Tu domain 2 LDE01_RS03380 PF01098 Cell cycle protein LDE01_RS03385 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) LDE01_RS03395 PF01467 Cytidylyltransferase-like LDE01_RS03400 PF05362 Lon protease (S16) C-terminal proteolytic domain LDE01_RS03400 PF13180 PDZ domain LDE01_RS03410 PF00753 Metallo-beta-lactamase superfamily LDE01_RS03410 PF13567 Domain of unknown function (DUF4131) LDE01_RS03410 PF03772 Competence protein LDE01_RS03415 PF06144 DNA polymerase III, delta subunit LDE01_RS03420 PF01649 Ribosomal protein S20 LDE01_RS03425 PF00312 Ribosomal protein S15 LDE01_RS03430 PF17770 Ribonuclease J C-terminal domain LDE01_RS03430 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LDE01_RS03430 PF00753 Metallo-beta-lactamase superfamily LDE01_RS03440 PF00009 Elongation factor Tu GTP binding domain LDE01_RS03440 PF03144 Elongation factor Tu domain 2 LDE01_RS03440 PF03143 Elongation factor Tu C-terminal domain LDE01_RS03445 PF05697 Bacterial trigger factor protein (TF) LDE01_RS03445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LDE01_RS03445 PF05698 Bacterial trigger factor protein (TF) C-terminus LDE01_RS03450 PF07724 AAA domain (Cdc48 subfamily) LDE01_RS03450 PF10431 C-terminal, D2-small domain, of ClpB protein LDE01_RS03450 PF06689 ClpX C4-type zinc finger LDE01_RS03455 PF01926 50S ribosome-binding GTPase LDE01_RS03470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS03480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDE01_RS03480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDE01_RS03485 PF00303 Thymidylate synthase LDE01_RS03490 PF00186 Dihydrofolate reductase LDE01_RS03500 PF03180 NLPA lipoprotein LDE01_RS03505 PF09383 NIL domain LDE01_RS03505 PF00005 ABC transporter LDE01_RS03510 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS03515 PF14537 Cytochrome c3 LDE01_RS03515 PF00890 FAD binding domain LDE01_RS03545 PF00155 Aminotransferase class I and II LDE01_RS03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS03550 PF03466 LysR substrate binding domain LDE01_RS03555 PF00750 tRNA synthetases class I (R) LDE01_RS03555 PF05746 DALR anticodon binding domain LDE01_RS03555 PF03485 Arginyl tRNA synthetase N terminal domain LDE01_RS03560 PF13936 Helix-turn-helix domain LDE01_RS03565 PF01316 Arginine repressor, DNA binding domain LDE01_RS03565 PF02863 Arginine repressor, C-terminal domain LDE01_RS03570 PF04127 DNA / pantothenate metabolism flavoprotein LDE01_RS03570 PF02441 Flavoprotein LDE01_RS03580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDE01_RS03580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDE01_RS03585 PF16124 RecQ zinc-binding LDE01_RS03585 PF00270 DEAD/DEAH box helicase LDE01_RS03585 PF00271 Helicase conserved C-terminal domain LDE01_RS03585 PF09382 RQC domain LDE01_RS03585 PF00570 HRDC domain LDE01_RS03590 PF01156 Inosine-uridine preferring nucleoside hydrolase LDE01_RS03595 PF08459 UvrC Helix-hairpin-helix N-terminal LDE01_RS03595 PF02151 UvrB/uvrC motif LDE01_RS03595 PF01541 GIY-YIG catalytic domain LDE01_RS03600 PF01018 GTP1/OBG LDE01_RS03600 PF09269 Domain of unknown function (DUF1967) LDE01_RS03600 PF01926 50S ribosome-binding GTPase LDE01_RS03605 PF01757 Acyltransferase family LDE01_RS03610 PF12706 Beta-lactamase superfamily domain LDE01_RS03615 PF00106 short chain dehydrogenase LDE01_RS03620 PF01783 Ribosomal L32p protein family LDE01_RS03625 PF00149 Calcineurin-like phosphoesterase LDE01_RS03625 PF02872 5'-nucleotidase, C-terminal domain LDE01_RS03635 PF04260 Protein of unknown function (DUF436) LDE01_RS03645 PF03807 NADP oxidoreductase coenzyme F420-dependent LDE01_RS03645 PF14748 Pyrroline-5-carboxylate reductase dimerisation LDE01_RS03650 PF00171 Aldehyde dehydrogenase family LDE01_RS03655 PF01472 PUA domain LDE01_RS03655 PF00696 Amino acid kinase family LDE01_RS03665 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDE01_RS03665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDE01_RS03665 PF14579 Helix-hairpin-helix motif LDE01_RS03665 PF02811 PHP domain LDE01_RS03665 PF01336 OB-fold nucleic acid binding domain LDE01_RS03670 PF00365 Phosphofructokinase LDE01_RS03675 PF02887 Pyruvate kinase, alpha/beta domain LDE01_RS03675 PF00391 PEP-utilising enzyme, mobile domain LDE01_RS03675 PF00224 Pyruvate kinase, barrel domain LDE01_RS03695 PF13509 S1 domain LDE01_RS03695 PF17783 CvfB-like winged helix domain LDE01_RS03700 PF00589 Phage integrase family LDE01_RS03700 PF02899 Phage integrase, N-terminal SAM-like domain LDE01_RS03705 PF00583 Acetyltransferase (GNAT) family LDE01_RS03710 PF02616 Segregation and condensation protein ScpA LDE01_RS03715 PF04079 Segregation and condensation complex subunit ScpB LDE01_RS03720 PF01479 S4 domain LDE01_RS03720 PF00849 RNA pseudouridylate synthase LDE01_RS03725 PF12822 ECF transporter, substrate-specific component LDE01_RS03735 PF02224 Cytidylate kinase LDE01_RS03740 PF00575 S1 RNA binding domain LDE01_RS03745 PF01926 50S ribosome-binding GTPase LDE01_RS03745 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LDE01_RS03750 PF00216 Bacterial DNA-binding protein LDE01_RS03770 PF03466 LysR substrate binding domain LDE01_RS03770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS03790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS03790 PF03466 LysR substrate binding domain LDE01_RS03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS03800 PF00764 Arginosuccinate synthase LDE01_RS03805 PF00206 Lyase LDE01_RS03805 PF14698 Argininosuccinate lyase C-terminal LDE01_RS03900 PF00890 FAD binding domain LDE01_RS03900 PF04205 FMN-binding domain LDE01_RS03900 PF03358 NADPH-dependent FMN reductase LDE01_RS03905 PF00890 FAD binding domain LDE01_RS03910 PF04607 Region found in RelA / SpoT proteins LDE01_RS03915 PF00072 Response regulator receiver domain LDE01_RS03915 PF00486 Transcriptional regulatory protein, C terminal LDE01_RS03920 PF00512 His Kinase A (phospho-acceptor) domain LDE01_RS03920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDE01_RS03925 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 LDE01_RS03925 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 LDE01_RS03925 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 LDE01_RS03925 PF13395 HNH endonuclease LDE01_RS03930 PF01867 CRISPR associated protein Cas1 LDE01_RS03935 PF09827 CRISPR associated protein Cas2 LDE01_RS03945 PF02803 Thiolase, C-terminal domain LDE01_RS03945 PF00108 Thiolase, N-terminal domain LDE01_RS03950 PF00368 Hydroxymethylglutaryl-coenzyme A reductase LDE01_RS03955 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal LDE01_RS03955 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal LDE01_RS03965 PF04073 Aminoacyl-tRNA editing domain LDE01_RS03975 PF02824 TGS domain LDE01_RS03975 PF04607 Region found in RelA / SpoT proteins LDE01_RS03975 PF13291 ACT domain LDE01_RS03980 PF02580 D-Tyr-tRNA(Tyr) deacylase LDE01_RS03985 PF13393 Histidyl-tRNA synthetase LDE01_RS03985 PF03129 Anticodon binding domain LDE01_RS03990 PF01336 OB-fold nucleic acid binding domain LDE01_RS03990 PF00152 tRNA synthetases class II (D, K and N) LDE01_RS03990 PF02938 GAD domain LDE01_RS04010 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LDE01_RS04010 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LDE01_RS04015 PF00550 Phosphopantetheine attachment site LDE01_RS04020 PF00698 Acyl transferase domain LDE01_RS04030 PF00109 Beta-ketoacyl synthase, N-terminal domain LDE01_RS04030 PF02801 Beta-ketoacyl synthase, C-terminal domain LDE01_RS04035 PF00364 Biotin-requiring enzyme LDE01_RS04040 PF07977 FabA-like domain LDE01_RS04045 PF02785 Biotin carboxylase C-terminal domain LDE01_RS04045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDE01_RS04045 PF00289 Biotin carboxylase, N-terminal domain LDE01_RS04050 PF01039 Carboxyl transferase domain LDE01_RS04055 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LDE01_RS04065 PF03309 Type III pantothenate kinase LDE01_RS04065 PF03099 Biotin/lipoate A/B protein ligase family LDE01_RS04065 PF02237 Biotin protein ligase C terminal domain LDE01_RS04085 PF01226 Formate/nitrite transporter LDE01_RS04090 PF00465 Iron-containing alcohol dehydrogenase LDE01_RS04090 PF00171 Aldehyde dehydrogenase family LDE01_RS04110 PF00588 SpoU rRNA Methylase family LDE01_RS04115 PF00733 Asparagine synthase LDE01_RS04115 PF13537 Glutamine amidotransferase domain LDE01_RS04195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS04215 PF12849 PBP superfamily domain LDE01_RS04220 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS04225 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS04230 PF00005 ABC transporter LDE01_RS04235 PF01895 PhoU domain LDE01_RS04240 PF00486 Transcriptional regulatory protein, C terminal LDE01_RS04240 PF00072 Response regulator receiver domain LDE01_RS04245 PF00512 His Kinase A (phospho-acceptor) domain LDE01_RS04245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDE01_RS04250 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LDE01_RS04255 PF00005 ABC transporter LDE01_RS04255 PF16326 ABC transporter C-terminal domain LDE01_RS04305 PF00005 ABC transporter LDE01_RS04305 PF00664 ABC transporter transmembrane region LDE01_RS04310 PF02660 Glycerol-3-phosphate acyltransferase LDE01_RS04315 PF01751 Toprim domain LDE01_RS04315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDE01_RS04315 PF00986 DNA gyrase B subunit, carboxyl terminus LDE01_RS04315 PF00204 DNA gyrase B LDE01_RS04320 PF03989 DNA gyrase C-terminal domain, beta-propeller LDE01_RS04320 PF00521 DNA gyrase/topoisomerase IV, subunit A LDE01_RS04325 PF02833 DHHA2 domain LDE01_RS04325 PF01368 DHH family LDE01_RS04330 PF01070 FMN-dependent dehydrogenase LDE01_RS04335 PF08544 GHMP kinases C terminal LDE01_RS04335 PF00288 GHMP kinases N terminal domain LDE01_RS04345 PF00288 GHMP kinases N terminal domain LDE01_RS04345 PF08544 GHMP kinases C terminal LDE01_RS04350 PF12705 PD-(D/E)XK nuclease superfamily LDE01_RS04355 PF13361 UvrD-like helicase C-terminal domain LDE01_RS04355 PF00580 UvrD/REP helicase N-terminal domain LDE01_RS04355 PF12705 PD-(D/E)XK nuclease superfamily LDE01_RS04360 PF00929 Exonuclease LDE01_RS04360 PF04851 Type III restriction enzyme, res subunit LDE01_RS04360 PF13307 Helicase C-terminal domain LDE01_RS04370 PF00152 tRNA synthetases class II (D, K and N) LDE01_RS04370 PF01336 OB-fold nucleic acid binding domain LDE01_RS04375 PF07261 Replication initiation and membrane attachment LDE01_RS04380 PF00730 HhH-GPD superfamily base excision DNA repair protein LDE01_RS04380 PF00633 Helix-hairpin-helix motif LDE01_RS04380 PF10576 Iron-sulfur binding domain of endonuclease III LDE01_RS04395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDE01_RS04395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDE01_RS04400 PF00326 Prolyl oligopeptidase family LDE01_RS04400 PF07676 WD40-like Beta Propeller Repeat LDE01_RS04405 PF00905 Penicillin binding protein transpeptidase domain LDE01_RS04405 PF00912 Transglycosylase LDE01_RS04410 PF03838 Recombination protein U LDE01_RS04415 PF06908 YspA SLOG family LDE01_RS04420 PF05103 DivIVA protein LDE01_RS04430 PF02926 THUMP domain LDE01_RS04430 PF01170 Putative RNA methylase family UPF0020 LDE01_RS04445 PF01268 Formate--tetrahydrofolate ligase LDE01_RS04450 PF01252 Signal peptidase (SPase) II LDE01_RS04455 PF00849 RNA pseudouridylate synthase LDE01_RS04455 PF01479 S4 domain LDE01_RS04460 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LDE01_RS04460 PF00117 Glutamine amidotransferase class-I LDE01_RS04465 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LDE01_RS04465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDE01_RS04465 PF02142 MGS-like domain LDE01_RS04475 PF05167 Uncharacterised ACR (DUF711) LDE01_RS04480 PF05670 NFACT protein RNA binding domain LDE01_RS04485 PF02645 Uncharacterised protein, DegV family COG1307 LDE01_RS04495 PF00892 EamA-like transporter family LDE01_RS04500 PF01842 ACT domain LDE01_RS04500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDE01_RS04500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDE01_RS04505 PF00266 Aminotransferase class-V LDE01_RS04510 PF00300 Histidine phosphatase superfamily (branch 1) LDE01_RS04530 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDE01_RS04530 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDE01_RS04535 PF01979 Amidohydrolase family LDE01_RS04540 PF13495 Phage integrase, N-terminal SAM-like domain LDE01_RS04540 PF00589 Phage integrase family LDE01_RS04545 PF02595 Glycerate kinase family LDE01_RS04575 PF08240 Alcohol dehydrogenase GroES-like domain LDE01_RS04575 PF00107 Zinc-binding dehydrogenase LDE01_RS04600 PF13419 Haloacid dehalogenase-like hydrolase LDE01_RS04615 PF03060 Nitronate monooxygenase LDE01_RS04660 PF13302 Acetyltransferase (GNAT) domain LDE01_RS04680 PF00581 Rhodanese-like domain LDE01_RS04685 PF00005 ABC transporter LDE01_RS04685 PF00664 ABC transporter transmembrane region LDE01_RS04690 PF00005 ABC transporter LDE01_RS04690 PF00664 ABC transporter transmembrane region LDE01_RS04700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDE01_RS04700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDE01_RS04715 PF00005 ABC transporter LDE01_RS04715 PF00664 ABC transporter transmembrane region LDE01_RS04720 PF00664 ABC transporter transmembrane region LDE01_RS04720 PF00005 ABC transporter LDE01_RS04725 PF13460 NAD(P)H-binding LDE01_RS04745 PF00561 alpha/beta hydrolase fold LDE01_RS04750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS04755 PF08241 Methyltransferase domain LDE01_RS04760 PF00664 ABC transporter transmembrane region LDE01_RS04760 PF00005 ABC transporter LDE01_RS04765 PF00664 ABC transporter transmembrane region LDE01_RS04765 PF00005 ABC transporter LDE01_RS04775 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LDE01_RS04775 PF02142 MGS-like domain LDE01_RS04775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LDE01_RS04785 PF00589 Phage integrase family LDE01_RS04795 PF00005 ABC transporter LDE01_RS04815 PF01451 Low molecular weight phosphotyrosine protein phosphatase LDE01_RS04825 PF00005 ABC transporter LDE01_RS04840 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDE01_RS04840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDE01_RS04845 PF04205 FMN-binding domain LDE01_RS04845 PF00890 FAD binding domain LDE01_RS04845 PF03358 NADPH-dependent FMN reductase LDE01_RS04875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LDE01_RS04880 PF00155 Aminotransferase class I and II LDE01_RS04885 PF01113 Dihydrodipicolinate reductase, N-terminus LDE01_RS04885 PF05173 Dihydrodipicolinate reductase, C-terminus LDE01_RS04890 PF00701 Dihydrodipicolinate synthetase family LDE01_RS04895 PF07687 Peptidase dimerisation domain LDE01_RS04895 PF01546 Peptidase family M20/M25/M40 LDE01_RS04900 PF00132 Bacterial transferase hexapeptide (six repeats) LDE01_RS04900 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal LDE01_RS04900 PF14602 Hexapeptide repeat of succinyl-transferase LDE01_RS04905 PF13840 ACT domain LDE01_RS04905 PF00696 Amino acid kinase family LDE01_RS04910 PF01678 Diaminopimelate epimerase LDE01_RS04925 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDE01_RS04925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDE01_RS04945 PF04237 YjbR LDE01_RS04950 PF02698 DUF218 domain LDE01_RS04970 PF02016 LD-carboxypeptidase N-terminal domain LDE01_RS04970 PF17676 LD-carboxypeptidase C-terminal domain LDE01_RS04975 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LDE01_RS04975 PF01189 16S rRNA methyltransferase RsmB/F LDE01_RS04975 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LDE01_RS04995 PF01470 Pyroglutamyl peptidase LDE01_RS05000 PF13367 PrsW family intramembrane metalloprotease LDE01_RS05005 PF04204 Homoserine O-succinyltransferase LDE01_RS05010 PF00171 Aldehyde dehydrogenase family LDE01_RS05015 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS05020 PF00005 ABC transporter LDE01_RS05020 PF00571 CBS domain LDE01_RS05025 PF02082 Transcriptional regulator LDE01_RS05035 PF01435 Peptidase family M48 LDE01_RS05045 PF00155 Aminotransferase class I and II LDE01_RS05065 PF09335 SNARE associated Golgi protein LDE01_RS05070 PF03590 Aspartate-ammonia ligase LDE01_RS05075 PF00152 tRNA synthetases class II (D, K and N) LDE01_RS05075 PF01336 OB-fold nucleic acid binding domain LDE01_RS05080 PF12464 Maltose acetyltransferase LDE01_RS05080 PF14602 Hexapeptide repeat of succinyl-transferase LDE01_RS05090 PF10502 Signal peptidase, peptidase S26 LDE01_RS05100 PF07687 Peptidase dimerisation domain LDE01_RS05100 PF01546 Peptidase family M20/M25/M40 LDE01_RS05105 PF01784 NIF3 (NGG1p interacting factor 3) LDE01_RS05110 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LDE01_RS05115 PF00293 NUDIX domain LDE01_RS05115 PF13344 Haloacid dehalogenase-like hydrolase LDE01_RS05125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LDE01_RS05125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LDE01_RS05135 PF14537 Cytochrome c3 LDE01_RS05135 PF00890 FAD binding domain LDE01_RS05155 PF00326 Prolyl oligopeptidase family LDE01_RS05155 PF07676 WD40-like Beta Propeller Repeat LDE01_RS05170 PF00990 Diguanylate cyclase, GGDEF domain LDE01_RS05170 PF00563 EAL domain LDE01_RS05175 PF01906 Putative heavy-metal-binding LDE01_RS05190 PF04545 Sigma-70, region 4 LDE01_RS05190 PF00140 Sigma-70 factor, region 1.2 LDE01_RS05190 PF04539 Sigma-70 region 3 LDE01_RS05190 PF03979 Sigma-70 factor, region 1.1 LDE01_RS05190 PF04542 Sigma-70 region 2 LDE01_RS05195 PF04539 Sigma-70 region 3 LDE01_RS05195 PF04542 Sigma-70 region 2 LDE01_RS05195 PF00140 Sigma-70 factor, region 1.2 LDE01_RS05195 PF03979 Sigma-70 factor, region 1.1 LDE01_RS05195 PF04545 Sigma-70, region 4 LDE01_RS05200 PF03979 Sigma-70 factor, region 1.1 LDE01_RS05200 PF00140 Sigma-70 factor, region 1.2 LDE01_RS05200 PF04542 Sigma-70 region 2 LDE01_RS05200 PF04545 Sigma-70, region 4 LDE01_RS05200 PF04539 Sigma-70 region 3 LDE01_RS05205 PF01807 CHC2 zinc finger LDE01_RS05205 PF08275 DNA primase catalytic core, N-terminal domain LDE01_RS05205 PF10410 DnaB-helicase binding domain of primase LDE01_RS05210 PF02092 Glycyl-tRNA synthetase beta subunit LDE01_RS05215 PF02091 Glycyl-tRNA synthetase alpha subunit LDE01_RS05220 PF11967 Recombination protein O N terminal LDE01_RS05220 PF02565 Recombination protein O C terminal LDE01_RS05225 PF01926 50S ribosome-binding GTPase LDE01_RS05225 PF07650 KH domain LDE01_RS05230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LDE01_RS05235 PF02130 Uncharacterized protein family UPF0054 LDE01_RS05240 PF02562 PhoH-like protein LDE01_RS05245 PF01165 Ribosomal protein S21 LDE01_RS05250 PF03618 Kinase/pyrophosphorylase LDE01_RS05260 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LDE01_RS05260 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LDE01_RS05270 PF00155 Aminotransferase class I and II LDE01_RS05275 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LDE01_RS05275 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LDE01_RS05305 PF10431 C-terminal, D2-small domain, of ClpB protein LDE01_RS05305 PF07724 AAA domain (Cdc48 subfamily) LDE01_RS05310 PF00227 Proteasome subunit LDE01_RS05315 PF02899 Phage integrase, N-terminal SAM-like domain LDE01_RS05315 PF00589 Phage integrase family LDE01_RS05320 PF01134 Glucose inhibited division protein A LDE01_RS05325 PF01396 Topoisomerase DNA binding C4 zinc finger LDE01_RS05325 PF01751 Toprim domain LDE01_RS05325 PF01131 DNA topoisomerase LDE01_RS05330 PF18255 DNA processing protein A sterile alpha motif domain LDE01_RS05330 PF02481 DNA recombination-mediator protein A LDE01_RS05335 PF01351 Ribonuclease HII LDE01_RS05340 PF01926 50S ribosome-binding GTPase LDE01_RS05345 PF06855 YozE SAM-like fold LDE01_RS05350 PF02645 Uncharacterised protein, DegV family COG1307 LDE01_RS05355 PF03006 Haemolysin-III related LDE01_RS05360 PF12627 Probable RNA and SrmB- binding site of polymerase A LDE01_RS05360 PF01743 Poly A polymerase head domain LDE01_RS05360 PF13735 tRNA nucleotidyltransferase domain 2 putative LDE01_RS05395 PF00664 ABC transporter transmembrane region LDE01_RS05395 PF00005 ABC transporter LDE01_RS05400 PF00664 ABC transporter transmembrane region LDE01_RS05400 PF00005 ABC transporter LDE01_RS05405 PF03466 LysR substrate binding domain LDE01_RS05405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS05420 PF02645 Uncharacterised protein, DegV family COG1307 LDE01_RS05425 PF00113 Enolase, C-terminal TIM barrel domain LDE01_RS05425 PF03952 Enolase, N-terminal domain LDE01_RS05435 PF00005 ABC transporter LDE01_RS05440 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS05445 PF03466 LysR substrate binding domain LDE01_RS05445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS05450 PF00403 Heavy-metal-associated domain LDE01_RS05455 PF03816 Cell envelope-related transcriptional attenuator domain LDE01_RS05460 PF01594 AI-2E family transporter LDE01_RS05465 PF01063 Amino-transferase class IV LDE01_RS05470 PF01545 Cation efflux family LDE01_RS05475 PF01022 Bacterial regulatory protein, arsR family LDE01_RS05480 PF00156 Phosphoribosyl transferase domain LDE01_RS05485 PF01368 DHH family LDE01_RS05485 PF02272 DHHA1 domain LDE01_RS05485 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LDE01_RS05485 PF17768 RecJ OB domain LDE01_RS05490 PF04203 Sortase domain LDE01_RS05495 PF00009 Elongation factor Tu GTP binding domain LDE01_RS05495 PF03144 Elongation factor Tu domain 2 LDE01_RS05495 PF00679 Elongation factor G C-terminus LDE01_RS05495 PF14492 Elongation Factor G, domain II LDE01_RS05495 PF06421 GTP-binding protein LepA C-terminus LDE01_RS05500 PF01556 DnaJ C terminal domain LDE01_RS05500 PF00226 DnaJ domain LDE01_RS05500 PF00684 DnaJ central domain LDE01_RS05505 PF00012 Hsp70 protein LDE01_RS05510 PF01025 GrpE LDE01_RS05515 PF01628 HrcA protein C terminal domain LDE01_RS05515 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LDE01_RS05520 PF01687 Riboflavin kinase LDE01_RS05520 PF06574 FAD synthetase LDE01_RS05525 PF14659 Phage integrase, N-terminal SAM-like domain LDE01_RS05525 PF00589 Phage integrase family LDE01_RS05590 PF16198 tRNA pseudouridylate synthase B C-terminal domain LDE01_RS05590 PF01509 TruB family pseudouridylate synthase (N terminal domain) LDE01_RS05595 PF02033 Ribosome-binding factor A LDE01_RS05600 PF00009 Elongation factor Tu GTP binding domain LDE01_RS05600 PF11987 Translation-initiation factor 2 LDE01_RS05600 PF04760 Translation initiation factor IF-2, N-terminal region LDE01_RS05605 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LDE01_RS05610 PF04296 Protein of unknown function (DUF448) LDE01_RS05615 PF13184 NusA-like KH domain LDE01_RS05615 PF00575 S1 RNA binding domain LDE01_RS05615 PF08529 NusA N-terminal domain LDE01_RS05620 PF17384 RimP C-terminal SH3 domain LDE01_RS05620 PF02576 RimP N-terminal domain LDE01_RS05625 PF14480 DNA polymerase III polC-type N-terminus I LDE01_RS05625 PF01336 OB-fold nucleic acid binding domain LDE01_RS05625 PF11490 DNA polymerase III polC-type N-terminus II LDE01_RS05625 PF00929 Exonuclease LDE01_RS05625 PF07733 Bacterial DNA polymerase III alpha NTPase domain LDE01_RS05625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LDE01_RS05625 PF14579 Helix-hairpin-helix motif LDE01_RS05625 PF02811 PHP domain LDE01_RS05630 PF03129 Anticodon binding domain LDE01_RS05630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDE01_RS05630 PF04073 Aminoacyl-tRNA editing domain LDE01_RS05635 PF02163 Peptidase family M50 LDE01_RS05635 PF17820 PDZ domain LDE01_RS05645 PF01255 Putative undecaprenyl diphosphate synthase LDE01_RS05650 PF01765 Ribosome recycling factor LDE01_RS05655 PF00696 Amino acid kinase family LDE01_RS05660 PF00889 Elongation factor TS LDE01_RS05665 PF00318 Ribosomal protein S2 LDE01_RS05670 PF01541 GIY-YIG catalytic domain LDE01_RS05675 PF01553 Acyltransferase LDE01_RS05680 PF01118 Semialdehyde dehydrogenase, NAD binding domain LDE01_RS05680 PF02774 Semialdehyde dehydrogenase, dimerisation domain LDE01_RS05685 PF00696 Amino acid kinase family LDE01_RS05685 PF13840 ACT domain LDE01_RS05690 PF01842 ACT domain LDE01_RS05690 PF00742 Homoserine dehydrogenase LDE01_RS05690 PF03447 Homoserine dehydrogenase, NAD binding domain LDE01_RS05705 PF00005 ABC transporter LDE01_RS05705 PF00664 ABC transporter transmembrane region LDE01_RS05710 PF00005 ABC transporter LDE01_RS05710 PF00664 ABC transporter transmembrane region LDE01_RS05715 PF03672 Uncharacterised protein family (UPF0154) LDE01_RS05720 PF05979 Bacterial protein of unknown function (DUF896) LDE01_RS05725 PF00717 Peptidase S24-like LDE01_RS05725 PF01726 LexA DNA binding domain LDE01_RS05730 PF06800 Sugar transport protein LDE01_RS05735 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDE01_RS05745 PF09369 Domain of unknown function (DUF1998) LDE01_RS05745 PF00270 DEAD/DEAH box helicase LDE01_RS05745 PF00271 Helicase conserved C-terminal domain LDE01_RS05760 PF13936 Helix-turn-helix domain LDE01_RS05765 PF17936 Bacterial Ig domain LDE01_RS05765 PF00149 Calcineurin-like phosphoesterase LDE01_RS05765 PF02872 5'-nucleotidase, C-terminal domain LDE01_RS05770 PF01245 Ribosomal protein L19 LDE01_RS05780 PF01746 tRNA (Guanine-1)-methyltransferase LDE01_RS05785 PF01782 RimM N-terminal domain LDE01_RS05785 PF05239 PRC-barrel domain LDE01_RS05790 PF00886 Ribosomal protein S16 LDE01_RS05795 PF02978 Signal peptide binding domain LDE01_RS05795 PF00448 SRP54-type protein, GTPase domain LDE01_RS05795 PF02881 SRP54-type protein, helical bundle domain LDE01_RS05810 PF02881 SRP54-type protein, helical bundle domain LDE01_RS05810 PF00448 SRP54-type protein, GTPase domain LDE01_RS05815 PF06470 SMC proteins Flexible Hinge Domain LDE01_RS05815 PF02463 RecF/RecN/SMC N terminal domain LDE01_RS05820 PF00035 Double-stranded RNA binding motif LDE01_RS05820 PF14622 Ribonuclease-III-like LDE01_RS05825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS05830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS05835 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS05840 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS05845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDE01_RS05845 PF00005 ABC transporter LDE01_RS05850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LDE01_RS05850 PF00005 ABC transporter LDE01_RS05855 PF00550 Phosphopantetheine attachment site LDE01_RS05860 PF02504 Fatty acid synthesis protein LDE01_RS05865 PF17191 RecG wedge domain LDE01_RS05865 PF00271 Helicase conserved C-terminal domain LDE01_RS05865 PF00270 DEAD/DEAH box helicase LDE01_RS05870 PF13684 Dihydroxyacetone kinase family LDE01_RS05870 PF02734 DAK2 domain LDE01_RS05875 PF03780 Asp23 family, cell envelope-related function LDE01_RS05880 PF00830 Ribosomal L28 family LDE01_RS05890 PF00005 ABC transporter LDE01_RS05890 PF00664 ABC transporter transmembrane region LDE01_RS05910 PF03193 RsgA GTPase LDE01_RS05910 PF16745 RsgA N-terminal domain LDE01_RS05915 PF00069 Protein kinase domain LDE01_RS05915 PF03793 PASTA domain LDE01_RS05925 PF01189 16S rRNA methyltransferase RsmB/F LDE01_RS05925 PF01029 NusB family LDE01_RS05930 PF02911 Formyl transferase, C-terminal domain LDE01_RS05930 PF00551 Formyl transferase LDE01_RS05935 PF00271 Helicase conserved C-terminal domain LDE01_RS05935 PF04851 Type III restriction enzyme, res subunit LDE01_RS05935 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LDE01_RS05935 PF18074 Primosomal protein N C-terminal domain LDE01_RS05935 PF17764 3′ DNA-binding domain (3′BD) LDE01_RS05940 PF01192 RNA polymerase Rpb6 LDE01_RS05945 PF00625 Guanylate kinase LDE01_RS05960 PF13476 AAA domain LDE01_RS05965 PF01728 FtsJ-like methyltransferase LDE01_RS05965 PF01479 S4 domain LDE01_RS05970 PF00348 Polyprenyl synthetase LDE01_RS05975 PF02609 Exonuclease VII small subunit LDE01_RS05980 PF13742 OB-fold nucleic acid binding domain LDE01_RS05980 PF02601 Exonuclease VII, large subunit LDE01_RS05985 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LDE01_RS05985 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LDE01_RS05990 PF01029 NusB family LDE01_RS05995 PF03780 Asp23 family, cell envelope-related function LDE01_RS06000 PF01132 Elongation factor P (EF-P) OB domain LDE01_RS06000 PF08207 Elongation factor P (EF-P) KOW-like domain LDE01_RS06000 PF09285 Elongation factor P, C-terminal LDE01_RS06005 PF00557 Metallopeptidase family M24 LDE01_RS06005 PF01321 Creatinase/Prolidase N-terminal domain LDE01_RS06010 PF01016 Ribosomal L27 protein LDE01_RS06015 PF00829 Ribosomal prokaryotic L21 protein LDE01_RS06025 PF01053 Cys/Met metabolism PLP-dependent enzyme LDE01_RS06030 PF01053 Cys/Met metabolism PLP-dependent enzyme LDE01_RS06035 PF00005 ABC transporter LDE01_RS06040 PF12399 Branched-chain amino acid ATP-binding cassette transporter LDE01_RS06040 PF00005 ABC transporter LDE01_RS06050 PF02653 Branched-chain amino acid transport system / permease component LDE01_RS06055 PF13458 Periplasmic binding protein LDE01_RS06060 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LDE01_RS06060 PF02843 Phosphoribosylglycinamide synthetase, C domain LDE01_RS06060 PF02844 Phosphoribosylglycinamide synthetase, N domain LDE01_RS06065 PF01808 AICARFT/IMPCHase bienzyme LDE01_RS06065 PF02142 MGS-like domain LDE01_RS06070 PF00551 Formyl transferase LDE01_RS06075 PF02769 AIR synthase related protein, C-terminal domain LDE01_RS06075 PF00586 AIR synthase related protein, N-terminal domain LDE01_RS06080 PF00156 Phosphoribosyl transferase domain LDE01_RS06080 PF13537 Glutamine amidotransferase domain LDE01_RS06085 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LDE01_RS06085 PF00586 AIR synthase related protein, N-terminal domain LDE01_RS06085 PF02769 AIR synthase related protein, C-terminal domain LDE01_RS06095 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase LDE01_RS06100 PF01259 SAICAR synthetase LDE01_RS06105 PF10397 Adenylosuccinate lyase C-terminus LDE01_RS06105 PF00206 Lyase LDE01_RS06110 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LDE01_RS06110 PF02222 ATP-grasp domain LDE01_RS06115 PF00731 AIR carboxylase LDE01_RS06140 PF01131 DNA topoisomerase LDE01_RS06140 PF01751 Toprim domain LDE01_RS06150 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal LDE01_RS06150 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LDE01_RS06150 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LDE01_RS06160 PF04204 Homoserine O-succinyltransferase LDE01_RS06165 PF00291 Pyridoxal-phosphate dependent enzyme LDE01_RS06180 PF02645 Uncharacterised protein, DegV family COG1307 LDE01_RS06210 PF03951 Glutamine synthetase, beta-Grasp domain LDE01_RS06210 PF00120 Glutamine synthetase, catalytic domain LDE01_RS06215 PF06838 Methionine gamma-lyase LDE01_RS06225 PF00581 Rhodanese-like domain LDE01_RS06240 PF01812 5-formyltetrahydrofolate cyclo-ligase family LDE01_RS06245 PF00471 Ribosomal protein L33 LDE01_RS06250 PF03717 Penicillin-binding Protein dimerisation domain LDE01_RS06250 PF00905 Penicillin binding protein transpeptidase domain LDE01_RS06260 PF03449 Transcription elongation factor, N-terminal LDE01_RS06260 PF01272 Transcription elongation factor, GreA/GreB, C-term LDE01_RS06265 PF03147 Ferredoxin-fold anticodon binding domain LDE01_RS06265 PF01588 Putative tRNA binding domain LDE01_RS06265 PF03483 B3/4 domain LDE01_RS06265 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LDE01_RS06265 PF03484 tRNA synthetase B5 domain LDE01_RS06270 PF01409 tRNA synthetases class II core domain (F) LDE01_RS06270 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LDE01_RS06275 PF01638 HxlR-like helix-turn-helix LDE01_RS06280 PF00588 SpoU rRNA Methylase family LDE01_RS06280 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDE01_RS06285 PF00708 Acylphosphatase LDE01_RS06290 PF02096 60Kd inner membrane protein LDE01_RS06295 PF00512 His Kinase A (phospho-acceptor) domain LDE01_RS06295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDE01_RS06295 PF18719 ArlS sensor domain LDE01_RS06300 PF00486 Transcriptional regulatory protein, C terminal LDE01_RS06300 PF00072 Response regulator receiver domain LDE01_RS06310 PF05636 HIGH Nucleotidyl Transferase LDE01_RS06325 PF01467 Cytidylyltransferase-like LDE01_RS06330 PF01926 50S ribosome-binding GTPase LDE01_RS06335 PF00453 Ribosomal protein L20 LDE01_RS06340 PF01632 Ribosomal protein L35 LDE01_RS06345 PF00707 Translation initiation factor IF-3, C-terminal domain LDE01_RS06345 PF05198 Translation initiation factor IF-3, N-terminal domain LDE01_RS06365 PF07319 Primosomal protein DnaI N-terminus LDE01_RS06365 PF01695 IstB-like ATP binding protein LDE01_RS06375 PF03477 ATP cone domain LDE01_RS06380 PF01121 Dephospho-CoA kinase LDE01_RS06385 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LDE01_RS06385 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LDE01_RS06385 PF06827 Zinc finger found in FPG and IleRS LDE01_RS06390 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LDE01_RS06390 PF01367 5'-3' exonuclease, C-terminal SAM fold LDE01_RS06390 PF00476 DNA polymerase family A LDE01_RS06435 PF03965 Penicillinase repressor LDE01_RS06450 PF01225 Mur ligase family, catalytic domain LDE01_RS06450 PF08245 Mur ligase middle domain LDE01_RS06450 PF02875 Mur ligase family, glutamate ligase domain LDE01_RS06455 PF14794 Domain of unknown function (DUF4479) LDE01_RS06455 PF01588 Putative tRNA binding domain LDE01_RS06460 PF00085 Thioredoxin LDE01_RS06465 PF02390 Putative methyltransferase LDE01_RS06475 PF00005 ABC transporter LDE01_RS06480 PF01230 HIT domain LDE01_RS06490 PF01180 Dihydroorotate dehydrogenase LDE01_RS06495 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LDE01_RS06500 PF00156 Phosphoribosyl transferase domain LDE01_RS06515 PF01202 Shikimate kinase LDE01_RS06520 PF01966 HD domain LDE01_RS06525 PF13514 AAA domain LDE01_RS06530 PF00149 Calcineurin-like phosphoesterase LDE01_RS06535 PF06133 Control of competence regulator ComK, YlbF/YmcA LDE01_RS06540 PF00912 Transglycosylase LDE01_RS06540 PF00905 Penicillin binding protein transpeptidase domain LDE01_RS06545 PF00849 RNA pseudouridylate synthase LDE01_RS06550 PF01116 Fructose-bisphosphate aldolase class-II LDE01_RS06555 PF03734 L,D-transpeptidase catalytic domain LDE01_RS06565 PF01473 Putative cell wall binding repeat LDE01_RS06565 PF02324 Glycosyl hydrolase family 70 LDE01_RS06580 PF03734 L,D-transpeptidase catalytic domain LDE01_RS06585 PF01256 Carbohydrate kinase LDE01_RS06590 PF00768 D-alanyl-D-alanine carboxypeptidase LDE01_RS06590 PF07943 Penicillin-binding protein 5, C-terminal domain LDE01_RS06600 PF00205 Thiamine pyrophosphate enzyme, central domain LDE01_RS06600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDE01_RS06600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDE01_RS06610 PF00391 PEP-utilising enzyme, mobile domain LDE01_RS06610 PF02896 PEP-utilising enzyme, TIM barrel domain LDE01_RS06610 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LDE01_RS06615 PF14667 Polysaccharide biosynthesis C-terminal domain LDE01_RS06615 PF01943 Polysaccharide biosynthesis protein LDE01_RS06620 PF08264 Anticodon-binding domain of tRNA LDE01_RS06620 PF00133 tRNA synthetases class I (I, L, M and V) LDE01_RS06620 PF13603 Leucyl-tRNA synthetase, Domain 2 LDE01_RS06620 PF09334 tRNA synthetases class I (M) LDE01_RS06625 PF01569 PAP2 superfamily LDE01_RS06630 PF07690 Major Facilitator Superfamily LDE01_RS06635 PF02773 S-adenosylmethionine synthetase, C-terminal domain LDE01_RS06635 PF00438 S-adenosylmethionine synthetase, N-terminal domain LDE01_RS06635 PF02772 S-adenosylmethionine synthetase, central domain LDE01_RS06690 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDE01_RS06695 PF09335 SNARE associated Golgi protein LDE01_RS06705 PF13344 Haloacid dehalogenase-like hydrolase LDE01_RS06715 PF02872 5'-nucleotidase, C-terminal domain LDE01_RS06725 PF00356 Bacterial regulatory proteins, lacI family LDE01_RS06730 PF00557 Metallopeptidase family M24 LDE01_RS06730 PF01321 Creatinase/Prolidase N-terminal domain LDE01_RS06750 PF00924 Mechanosensitive ion channel LDE01_RS06755 PF01725 Ham1 family LDE01_RS06765 PF00085 Thioredoxin LDE01_RS06770 PF00488 MutS domain V LDE01_RS06770 PF01713 Smr domain LDE01_RS06775 PF06949 Protein of unknown function (DUF1292) LDE01_RS06780 PF03652 Holliday junction resolvase LDE01_RS06785 PF06135 IreB regulatory phosphoprotein LDE01_RS06790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LDE01_RS06790 PF01411 tRNA synthetases class II (A) LDE01_RS06790 PF02272 DHHA1 domain LDE01_RS06795 PF00270 DEAD/DEAH box helicase LDE01_RS06795 PF00271 Helicase conserved C-terminal domain LDE01_RS06800 PF01368 DHH family LDE01_RS06800 PF02272 DHHA1 domain LDE01_RS06805 PF00817 impB/mucB/samB family LDE01_RS06805 PF11799 impB/mucB/samB family C-terminal domain LDE01_RS06810 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LDE01_RS06810 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LDE01_RS06820 PF05496 Holliday junction DNA helicase RuvB P-loop domain LDE01_RS06820 PF05491 RuvB C-terminal winged helix domain LDE01_RS06820 PF17864 RuvB AAA lid domain LDE01_RS06825 PF01330 RuvA N terminal domain LDE01_RS06825 PF07499 RuvA, C-terminal domain LDE01_RS06830 PF01119 DNA mismatch repair protein, C-terminal domain LDE01_RS06830 PF08676 MutL C terminal dimerisation domain LDE01_RS06835 PF05188 MutS domain II LDE01_RS06835 PF00488 MutS domain V LDE01_RS06835 PF01624 MutS domain I LDE01_RS06835 PF05192 MutS domain III LDE01_RS06835 PF05190 MutS family domain IV LDE01_RS06840 PF00118 TCP-1/cpn60 chaperonin family LDE01_RS06845 PF00166 Chaperonin 10 Kd subunit LDE01_RS06850 PF02629 CoA binding domain LDE01_RS06850 PF06971 Putative DNA-binding protein N-terminus LDE01_RS06855 PF16326 ABC transporter C-terminal domain LDE01_RS06855 PF12848 ABC transporter LDE01_RS06855 PF00005 ABC transporter LDE01_RS06860 PF00814 Glycoprotease family LDE01_RS06870 PF00814 Glycoprotease family LDE01_RS06875 PF12822 ECF transporter, substrate-specific component LDE01_RS06885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LDE01_RS06890 PF06156 Initiation control protein YabA LDE01_RS06895 PF09115 DNA polymerase III, delta subunit, C terminal LDE01_RS06900 PF06153 Cyclic-di-AMP receptor LDE01_RS06905 PF02223 Thymidylate kinase LDE01_RS06915 PF13662 Toprim domain LDE01_RS06915 PF02132 RecR protein LDE01_RS06920 PF02575 YbaB/EbfC DNA-binding family LDE01_RS06925 PF12169 DNA polymerase III subunits gamma and tau domain III LDE01_RS06935 PF14437 MafB19-like deaminase LDE01_RS06940 PF05175 Methyltransferase small domain LDE01_RS06945 PF00156 Phosphoribosyl transferase domain LDE01_RS06960 PF03217 Surface later protein A domain LDE01_RS06980 PF07745 Glycosyl hydrolase family 53 LDE01_RS06995 PF00933 Glycosyl hydrolase family 3 N terminal domain LDE01_RS06995 PF01915 Glycosyl hydrolase family 3 C-terminal domain LDE01_RS07010 PF00216 Bacterial DNA-binding protein LDE01_RS07015 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS07020 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LDE01_RS07025 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS07030 PF00005 ABC transporter LDE01_RS07030 PF00571 CBS domain LDE01_RS07040 PF00216 Bacterial DNA-binding protein LDE01_RS07055 PF00542 Ribosomal protein L7/L12 C-terminal domain LDE01_RS07055 PF16320 Ribosomal protein L7/L12 dimerisation domain LDE01_RS07060 PF00466 Ribosomal protein L10 LDE01_RS07065 PF12323 Helix-turn-helix domain LDE01_RS07065 PF07282 Putative transposase DNA-binding domain LDE01_RS07065 PF01385 Probable transposase LDE01_RS07075 PF00909 Ammonium Transporter Family LDE01_RS07080 PF00535 Glycosyl transferase family 2 LDE01_RS07085 PF00687 Ribosomal protein L1p/L10e family LDE01_RS07090 PF03946 Ribosomal protein L11, N-terminal domain LDE01_RS07090 PF00298 Ribosomal protein L11, RNA binding domain LDE01_RS07095 PF02357 Transcription termination factor nusG LDE01_RS07095 PF00467 KOW motif LDE01_RS07105 PF00471 Ribosomal protein L33 LDE01_RS07110 PF02780 Transketolase, C-terminal domain LDE01_RS07110 PF02779 Transketolase, pyrimidine binding domain LDE01_RS07110 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LDE01_RS07130 PF00588 SpoU rRNA Methylase family LDE01_RS07130 PF08032 RNA 2'-O ribose methyltransferase substrate binding LDE01_RS07135 PF00636 Ribonuclease III domain LDE01_RS07140 PF01406 tRNA synthetases class I (C) catalytic domain LDE01_RS07140 PF09190 DALR domain LDE01_RS07150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS07155 PF01546 Peptidase family M20/M25/M40 LDE01_RS07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LDE01_RS07160 PF03466 LysR substrate binding domain LDE01_RS07165 PF03601 Conserved hypothetical protein 698 LDE01_RS07170 PF00749 tRNA synthetases class I (E and Q), catalytic domain LDE01_RS07180 PF00005 ABC transporter LDE01_RS07185 PF00392 Bacterial regulatory proteins, gntR family LDE01_RS07190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LDE01_RS07195 PF00293 NUDIX domain LDE01_RS07220 PF00171 Aldehyde dehydrogenase family LDE01_RS07220 PF00465 Iron-containing alcohol dehydrogenase LDE01_RS07230 PF12558 ATP-binding cassette cobalt transporter LDE01_RS07230 PF00005 ABC transporter LDE01_RS07235 PF07155 ECF-type riboflavin transporter, S component LDE01_RS07245 PF00324 Amino acid permease LDE01_RS07255 PF00005 ABC transporter LDE01_RS07315 PF01501 Glycosyl transferase family 8 LDE01_RS07320 PF18073 Rubredoxin metal binding domain LDE01_RS07325 PF00692 dUTPase LDE01_RS07335 PF03051 Peptidase C1-like family LDE01_RS07350 PF07977 FabA-like domain LDE01_RS07355 PF00300 Histidine phosphatase superfamily (branch 1) LDE01_RS07370 PF00300 Histidine phosphatase superfamily (branch 1) LDE01_RS07390 PF13378 Enolase C-terminal domain-like LDE01_RS07390 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LDE01_RS07400 PF01418 Helix-turn-helix domain, rpiR family LDE01_RS07400 PF01380 SIS domain LDE01_RS07405 PF01546 Peptidase family M20/M25/M40 LDE01_RS07410 PF00324 Amino acid permease LDE01_RS07420 PF02502 Ribose/Galactose Isomerase LDE01_RS07425 PF02502 Ribose/Galactose Isomerase LDE01_RS07430 PF00455 DeoR C terminal sensor domain LDE01_RS07430 PF08220 DeoR-like helix-turn-helix domain LDE01_RS07440 PF00294 pfkB family carbohydrate kinase LDE01_RS07445 PF01791 DeoC/LacD family aldolase LDE01_RS07470 PF00232 Glycosyl hydrolase family 1 LDE01_RS07475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDE01_RS07475 PF02378 Phosphotransferase system, EIIC LDE01_RS07485 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LDE01_RS07490 PF10415 Fumarase C C-terminus LDE01_RS07490 PF00206 Lyase LDE01_RS07495 PF01263 Aldose 1-epimerase LDE01_RS07500 PF00288 GHMP kinases N terminal domain LDE01_RS07500 PF10509 Galactokinase galactose-binding signature LDE01_RS07500 PF08544 GHMP kinases C terminal LDE01_RS07505 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LDE01_RS07505 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LDE01_RS07535 PF00288 GHMP kinases N terminal domain LDE01_RS07535 PF08544 GHMP kinases C terminal LDE01_RS07540 PF00291 Pyridoxal-phosphate dependent enzyme LDE01_RS07540 PF14821 Threonine synthase N terminus LDE01_RS07575 PF00356 Bacterial regulatory proteins, lacI family LDE01_RS07580 PF00251 Glycosyl hydrolases family 32 N-terminal domain LDE01_RS07580 PF08244 Glycosyl hydrolases family 32 C terminal LDE01_RS07585 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDE01_RS07585 PF00367 phosphotransferase system, EIIB LDE01_RS07585 PF02378 Phosphotransferase system, EIIC LDE01_RS07590 PF00365 Phosphofructokinase LDE01_RS07595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LDE01_RS07595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LDE01_RS07595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LDE01_RS07595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LDE01_RS07600 PF00128 Alpha amylase, catalytic domain LDE01_RS07600 PF02903 Alpha amylase, N-terminal ig-like domain LDE01_RS07625 PF13936 Helix-turn-helix domain LDE01_RS07635 PF00128 Alpha amylase, catalytic domain LDE01_RS07640 PF07690 Major Facilitator Superfamily LDE01_RS07660 PF01370 NAD dependent epimerase/dehydratase family LDE01_RS07665 PF00877 NlpC/P60 family LDE01_RS07665 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain LDE01_RS07670 PF00324 Amino acid permease LDE01_RS07685 PF03613 PTS system mannose/fructose/sorbose family IID component LDE01_RS07690 PF03609 PTS system sorbose-specific iic component LDE01_RS07695 PF03610 PTS system fructose IIA component LDE01_RS07695 PF03830 PTS system sorbose subfamily IIB component LDE01_RS07705 PF03553 Na+/H+ antiporter family LDE01_RS07730 PF02378 Phosphotransferase system, EIIC LDE01_RS07730 PF00367 phosphotransferase system, EIIB LDE01_RS07730 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDE01_RS07740 PF01380 SIS domain LDE01_RS07740 PF01418 Helix-turn-helix domain, rpiR family LDE01_RS07745 PF02378 Phosphotransferase system, EIIC LDE01_RS07745 PF00367 phosphotransferase system, EIIB LDE01_RS07750 PF11975 Family 4 glycosyl hydrolase C-terminal domain LDE01_RS07750 PF02056 Family 4 glycosyl hydrolase LDE01_RS07755 PF01668 SmpB protein LDE01_RS07760 PF00575 S1 RNA binding domain LDE01_RS07760 PF00773 RNB domain LDE01_RS07760 PF08206 Ribonuclease B OB domain LDE01_RS07760 PF17876 Cold shock domain LDE01_RS07770 PF00884 Sulfatase LDE01_RS07780 PF00534 Glycosyl transferases group 1 LDE01_RS07780 PF13439 Glycosyltransferase Family 4 LDE01_RS07785 PF00534 Glycosyl transferases group 1 LDE01_RS07785 PF13439 Glycosyltransferase Family 4 LDE01_RS07920 PF13520 Amino acid permease LDE01_RS07930 PF00696 Amino acid kinase family LDE01_RS07935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LDE01_RS07935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LDE01_RS07950 PF07969 Amidohydrolase family LDE01_RS07990 PF02403 Seryl-tRNA synthetase N-terminal domain LDE01_RS07990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LDE01_RS08020 PF00117 Glutamine amidotransferase class-I LDE01_RS08020 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LDE01_RS08035 PF00171 Aldehyde dehydrogenase family LDE01_RS08045 PF03176 MMPL family LDE01_RS08045 PF03176 MMPL family LDE01_RS08070 PF00561 alpha/beta hydrolase fold LDE01_RS08075 PF13673 Acetyltransferase (GNAT) domain LDE01_RS08090 PF01223 DNA/RNA non-specific endonuclease LDE01_RS08095 PF00248 Aldo/keto reductase family LDE01_RS08115 PF00664 ABC transporter transmembrane region LDE01_RS08115 PF00005 ABC transporter LDE01_RS08125 PF00561 alpha/beta hydrolase fold LDE01_RS08135 PF09285 Elongation factor P, C-terminal LDE01_RS08135 PF08207 Elongation factor P (EF-P) KOW-like domain LDE01_RS08135 PF01132 Elongation factor P (EF-P) OB domain LDE01_RS08140 PF00485 Phosphoribulokinase / Uridine kinase family LDE01_RS08160 PF00497 Bacterial extracellular solute-binding proteins, family 3 LDE01_RS08165 PF12323 Helix-turn-helix domain LDE01_RS08165 PF01385 Probable transposase LDE01_RS08165 PF07282 Putative transposase DNA-binding domain LDE01_RS08170 PF00005 ABC transporter LDE01_RS08175 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS08180 PF13538 UvrD-like helicase C-terminal domain LDE01_RS08200 PF03009 Glycerophosphoryl diester phosphodiesterase family LDE01_RS08220 PF02463 RecF/RecN/SMC N terminal domain LDE01_RS08235 PF04138 GtrA-like protein LDE01_RS08245 PF01467 Cytidylyltransferase-like LDE01_RS08265 PF00535 Glycosyl transferase family 2 LDE01_RS08280 PF17102 Stealth protein CR3, conserved region 3 LDE01_RS08280 PF11380 Stealth protein CR2, conserved region 2 LDE01_RS08280 PF17101 Stealth protein CR1, conserved region 1 LDE01_RS08285 PF00535 Glycosyl transferase family 2 LDE01_RS08295 PF00535 Glycosyl transferase family 2 LDE01_RS08295 PF01501 Glycosyl transferase family 8 LDE01_RS08330 PF03275 UDP-galactopyranose mutase LDE01_RS08340 PF03816 Cell envelope-related transcriptional attenuator domain LDE01_RS08345 PF03816 Cell envelope-related transcriptional attenuator domain LDE01_RS08350 PF02435 Levansucrase/Invertase LDE01_RS08370 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LDE01_RS08370 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LDE01_RS08405 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDE01_RS08405 PF00367 phosphotransferase system, EIIB LDE01_RS08405 PF02378 Phosphotransferase system, EIIC LDE01_RS08410 PF07702 UTRA domain LDE01_RS08410 PF00392 Bacterial regulatory proteins, gntR family LDE01_RS08415 PF16657 Maltogenic Amylase, C-terminal domain LDE01_RS08415 PF00128 Alpha amylase, catalytic domain LDE01_RS08430 PF00005 ABC transporter LDE01_RS08435 PF01641 SelR domain LDE01_RS08445 PF04321 RmlD substrate binding domain LDE01_RS08450 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LDE01_RS08455 PF00483 Nucleotidyl transferase LDE01_RS08460 PF16363 GDP-mannose 4,6 dehydratase LDE01_RS08465 PF01209 ubiE/COQ5 methyltransferase family LDE01_RS08475 PF00230 Major intrinsic protein LDE01_RS08480 PF03610 PTS system fructose IIA component LDE01_RS08485 PF02734 DAK2 domain LDE01_RS08490 PF02733 Dak1 domain LDE01_RS08545 PF00892 EamA-like transporter family LDE01_RS08570 PF12804 MobA-like NTP transferase domain LDE01_RS08570 PF14602 Hexapeptide repeat of succinyl-transferase LDE01_RS08570 PF00132 Bacterial transferase hexapeptide (six repeats) LDE01_RS08575 PF00483 Nucleotidyl transferase LDE01_RS08580 PF04991 LicD family LDE01_RS08620 PF13005 zinc-finger binding domain of transposase IS66 LDE01_RS08620 PF03050 Transposase IS66 family LDE01_RS08620 PF13817 IS66 C-terminal element LDE01_RS08620 PF13007 Transposase C of IS166 homeodomain LDE01_RS08625 PF14667 Polysaccharide biosynthesis C-terminal domain LDE01_RS08625 PF01943 Polysaccharide biosynthesis protein LDE01_RS08660 PF02397 Bacterial sugar transferase LDE01_RS08670 PF13614 AAA domain LDE01_RS08675 PF02706 Chain length determinant protein LDE01_RS08680 PF03816 Cell envelope-related transcriptional attenuator domain LDE01_RS08705 PF00128 Alpha amylase, catalytic domain LDE01_RS08705 PF17999 Pullulanase N1-terminal domain LDE01_RS08705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LDE01_RS08710 PF13936 Helix-turn-helix domain LDE01_RS08710 PF00665 Integrase core domain LDE01_RS08730 PF01926 50S ribosome-binding GTPase LDE01_RS08730 PF13167 GTP-binding GTPase N-terminal LDE01_RS08730 PF16360 GTP-binding GTPase Middle Region LDE01_RS08745 PF00877 NlpC/P60 family LDE01_RS08745 PF01476 LysM domain LDE01_RS08760 PF00877 NlpC/P60 family LDE01_RS08765 PF01476 LysM domain LDE01_RS08765 PF00877 NlpC/P60 family LDE01_RS08770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDE01_RS08770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LDE01_RS08775 PF00877 NlpC/P60 family LDE01_RS08780 PF00625 Guanylate kinase LDE01_RS08830 PF12848 ABC transporter LDE01_RS08830 PF00005 ABC transporter LDE01_RS08840 PF03816 Cell envelope-related transcriptional attenuator domain LDE01_RS08850 PF01432 Peptidase family M3 LDE01_RS08850 PF08439 Oligopeptidase F LDE01_RS08855 PF01070 FMN-dependent dehydrogenase LDE01_RS08860 PF02652 L-lactate permease LDE01_RS08875 PF00950 ABC 3 transport family LDE01_RS08880 PF00005 ABC transporter LDE01_RS08890 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LDE01_RS08890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LDE01_RS08895 PF00294 pfkB family carbohydrate kinase LDE01_RS08900 PF08220 DeoR-like helix-turn-helix domain LDE01_RS08900 PF00455 DeoR C terminal sensor domain LDE01_RS08910 PF01177 Asp/Glu/Hydantoin racemase LDE01_RS08915 PF08245 Mur ligase middle domain LDE01_RS08915 PF02875 Mur ligase family, glutamate ligase domain LDE01_RS08920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LDE01_RS08920 PF00512 His Kinase A (phospho-acceptor) domain LDE01_RS08925 PF00072 Response regulator receiver domain LDE01_RS08925 PF00486 Transcriptional regulatory protein, C terminal LDE01_RS08930 PF00664 ABC transporter transmembrane region LDE01_RS08930 PF00005 ABC transporter LDE01_RS08935 PF00005 ABC transporter LDE01_RS08935 PF00664 ABC transporter transmembrane region LDE01_RS08945 PF01926 50S ribosome-binding GTPase LDE01_RS08945 PF06071 Protein of unknown function (DUF933) LDE01_RS08950 PF06107 Bacterial protein of unknown function (DUF951) LDE01_RS08955 PF02195 ParB-like nuclease domain LDE01_RS08955 PF17762 HTH domain found in ParB protein LDE01_RS08960 PF13614 AAA domain LDE01_RS08965 PF02195 ParB-like nuclease domain LDE01_RS08965 PF17762 HTH domain found in ParB protein LDE01_RS08970 PF02527 rRNA small subunit methyltransferase G LDE01_RS08980 PF02424 ApbE family LDE01_RS08985 PF13350 Tyrosine phosphatase family LDE01_RS08990 PF03358 NADPH-dependent FMN reductase LDE01_RS08995 PF03358 NADPH-dependent FMN reductase LDE01_RS09005 PF03577 Peptidase family C69 LDE01_RS09010 PF02378 Phosphotransferase system, EIIC LDE01_RS09010 PF00367 phosphotransferase system, EIIB LDE01_RS09010 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LDE01_RS09020 PF01243 Pyridoxamine 5'-phosphate oxidase LDE01_RS09030 PF00005 ABC transporter LDE01_RS09035 PF02687 FtsX-like permease family LDE01_RS09045 PF01565 FAD binding domain LDE01_RS09045 PF02913 FAD linked oxidases, C-terminal domain LDE01_RS09050 PF03883 Peroxide stress protein YaaA LDE01_RS09065 PF00881 Nitroreductase family LDE01_RS09070 PF01433 Peptidase family M1 domain LDE01_RS09070 PF11838 ERAP1-like C-terminal domain LDE01_RS09090 PF03577 Peptidase family C69 LDE01_RS09100 PF00939 Sodium:sulfate symporter transmembrane region LDE01_RS09105 PF00206 Lyase LDE01_RS09105 PF10415 Fumarase C C-terminus LDE01_RS09135 PF01661 Macro domain LDE01_RS09140 PF13350 Tyrosine phosphatase family LDE01_RS09145 PF13350 Tyrosine phosphatase family LDE01_RS09150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LDE01_RS09150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LDE01_RS09155 PF07685 CobB/CobQ-like glutamine amidotransferase domain LDE01_RS09170 PF10431 C-terminal, D2-small domain, of ClpB protein LDE01_RS09170 PF07724 AAA domain (Cdc48 subfamily) LDE01_RS09170 PF00004 ATPase family associated with various cellular activities (AAA) LDE01_RS09170 PF17871 AAA lid domain LDE01_RS09185 PF05525 Branched-chain amino acid transport protein LDE01_RS09190 PF05525 Branched-chain amino acid transport protein LDE01_RS09205 PF00892 EamA-like transporter family LDE01_RS09215 PF07722 Peptidase C26 LDE01_RS09250 PF16925 Tetracyclin repressor-like, C-terminal domain LDE01_RS09250 PF00440 Bacterial regulatory proteins, tetR family LDE01_RS09255 PF02687 FtsX-like permease family LDE01_RS09255 PF00005 ABC transporter LDE01_RS09255 PF12704 MacB-like periplasmic core domain LDE01_RS09275 PF04914 DltD protein LDE01_RS09280 PF00550 Phosphopantetheine attachment site LDE01_RS09285 PF03062 MBOAT, membrane-bound O-acyltransferase family LDE01_RS09290 PF00501 AMP-binding enzyme LDE01_RS09290 PF13193 AMP-binding enzyme C-terminal domain LDE01_RS09340 PF00999 Sodium/hydrogen exchanger family LDE01_RS09355 PF02608 ABC transporter substrate-binding protein PnrA-like LDE01_RS09385 PF02608 ABC transporter substrate-binding protein PnrA-like LDE01_RS09390 PF02608 ABC transporter substrate-binding protein PnrA-like LDE01_RS09395 PF00005 ABC transporter LDE01_RS09400 PF02653 Branched-chain amino acid transport system / permease component LDE01_RS09405 PF02653 Branched-chain amino acid transport system / permease component LDE01_RS09420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDE01_RS09420 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDE01_RS09440 PF00248 Aldo/keto reductase family LDE01_RS09445 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LDE01_RS09460 PF07992 Pyridine nucleotide-disulphide oxidoreductase LDE01_RS09460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LDE01_RS09480 PF13614 AAA domain LDE01_RS09485 PF00589 Phage integrase family LDE01_RS09485 PF02899 Phage integrase, N-terminal SAM-like domain LDE01_RS09490 PF00210 Ferritin-like domain LDE01_RS09510 PF02687 FtsX-like permease family LDE01_RS09510 PF00005 ABC transporter LDE01_RS09510 PF12704 MacB-like periplasmic core domain LDE01_RS09520 PF01712 Deoxynucleoside kinase LDE01_RS09525 PF01712 Deoxynucleoside kinase LDE01_RS09530 PF00528 Binding-protein-dependent transport system inner membrane component LDE01_RS09535 PF00005 ABC transporter LDE01_RS09540 PF00860 Permease family LDE01_RS09565 PF01381 Helix-turn-helix LDE01_RS09570 PF17191 RecG wedge domain LDE01_RS09570 PF13749 Putative ATP-dependent DNA helicase recG C-terminal LDE01_RS09570 PF00270 DEAD/DEAH box helicase LDE01_RS09575 PF00654 Voltage gated chloride channel LDE01_RS09600 PF00005 ABC transporter LDE01_RS09620 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LDE01_RS09620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LDE01_RS09625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LDE01_RS09625 PF00205 Thiamine pyrophosphate enzyme, central domain LDE01_RS09625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LDE01_RS09630 PF01134 Glucose inhibited division protein A LDE01_RS09630 PF13932 GidA associated domain LDE01_RS09635 PF10396 GTP-binding protein TrmE N-terminus LDE01_RS09635 PF12631 MnmE helical domain LDE01_RS09635 PF01926 50S ribosome-binding GTPase LDE01_RS09640 PF02096 60Kd inner membrane protein LDE01_RS09645 PF00825 Ribonuclease P LDE01_RS09650 PF00468 Ribosomal protein L34