ALX04_RS00020	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS00025	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS00035	SM00900	ALX04_RS00035
ALX04_RS00040	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS00080	SM00341	Helicase and RNase D C-terminal
ALX04_RS00080	SM00487	DEAD-like helicases superfamily
ALX04_RS00080	SM00490	helicase superfamily c-terminal domain
ALX04_RS00080	SM00956	ALX04_RS00080
ALX04_RS00090	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS00120	SM00855	Phosphoglycerate mutase family
ALX04_RS00215	SM00422	helix_turn_helix, mercury resistance
ALX04_RS00225	SM00529	Helix-turn-helix diphteria tox regulatory element
ALX04_RS00225	SM00899	ALX04_RS00225
ALX04_RS00230	SM00357	Cold shock protein domain
ALX04_RS00250	SM00014	Acid phosphatase homologues
ALX04_RS00350	SM00663	RNA polymerase I subunit A N-terminus
ALX04_RS00370	SM00838	Elongation factor G C-terminus
ALX04_RS00370	SM00889	Elongation factor G, domain IV
ALX04_RS00375	SM01403	ALX04_RS00375
ALX04_RS00395	SM01382	ALX04_RS00395
ALX04_RS00395	SM01383	ALX04_RS00395
ALX04_RS00410	SM00322	K homology RNA-binding domain
ALX04_RS00430	SM01374	ALX04_RS00430
ALX04_RS00435	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ALX04_RS00490	SM00316	Ribosomal protein S1-like RNA-binding domain
ALX04_RS00510	SM00662	RNA polymerases D
ALX04_RS00540	SM00900	ALX04_RS00540
ALX04_RS00550	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS00555	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS00595	SM00861	Transketolase, pyrimidine binding domain
ALX04_RS00635	SM00342	helix_turn_helix, arabinose operon control protein
ALX04_RS00645	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS00680	SM00919	Malic enzyme, NAD binding domain
ALX04_RS00680	SM01274	ALX04_RS00680
ALX04_RS00685	SM00764	Citrate lyase ligase C-terminal domain
ALX04_RS00765	SM00919	Malic enzyme, NAD binding domain
ALX04_RS00765	SM01274	ALX04_RS00765
ALX04_RS00805	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS00810	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS00840	SM00047	Lysozyme subfamily 2
ALX04_RS00865	SM00292	breast cancer carboxy-terminal domain
ALX04_RS00865	SM00532	Ligase N family
ALX04_RS00885	SM00845	GatB domain
ALX04_RS00890	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ALX04_RS00925	SM00641	Glycosyl hydrolases family 25
ALX04_RS00935	SM00357	Cold shock protein domain
ALX04_RS00945	SM00487	DEAD-like helicases superfamily
ALX04_RS00945	SM00490	helicase superfamily c-terminal domain
ALX04_RS00985	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ALX04_RS01015	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS01280	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS01320	SM01350	ALX04_RS01320
ALX04_RS01380	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS01385	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS01390	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS01400	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS01400	SM01086	C-terminal, D2-small domain, of ClpB protein
ALX04_RS01610	SM00409	Immunoglobulin
ALX04_RS01610	SM00635	Bacterial Ig-like domain 2
ALX04_RS01645	SM00014	Acid phosphatase homologues
ALX04_RS01660	SM00363	S4 RNA-binding domain
ALX04_RS01680	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS01735	SM00850	LytTr DNA-binding domain
ALX04_RS01750	SM00422	helix_turn_helix, mercury resistance
ALX04_RS01785	SM00448	cheY-homologous receiver domain
ALX04_RS01785	SM00850	LytTr DNA-binding domain
ALX04_RS01805	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS01820	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS01925	SM00836	DALR anticodon binding domain
ALX04_RS01925	SM01016	Arginyl tRNA synthetase N terminal dom
ALX04_RS01935	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS01990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS02035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALX04_RS02060	SM00900	ALX04_RS02060
ALX04_RS02155	SM00100	Cyclic nucleotide-monophosphate binding domain
ALX04_RS02155	SM00419	helix_turn_helix, cAMP Regulatory protein
ALX04_RS02210	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS02240	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS02240	SM00843	ALX04_RS02240
ALX04_RS02260	SM00899	ALX04_RS02260
ALX04_RS02265	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS02295	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS02305	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ALX04_RS02305	SM00474	3'-5' exonuclease
ALX04_RS02305	SM00475	5'-3' exonuclease
ALX04_RS02305	SM00482	DNA polymerase A domain
ALX04_RS02310	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ALX04_RS02310	SM01232	ALX04_RS02310
ALX04_RS02335	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ALX04_RS02360	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS02405	SM01103	ALX04_RS02405
ALX04_RS02415	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALX04_RS02455	SM01350	ALX04_RS02455
ALX04_RS02465	SM00448	cheY-homologous receiver domain
ALX04_RS02465	SM00862	Transcriptional regulatory protein, C terminal
ALX04_RS02470	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ALX04_RS02470	SM00387	Histidine kinase-like ATPases
ALX04_RS02470	SM00388	His Kinase A (phosphoacceptor) domain
ALX04_RS02505	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ALX04_RS02525	SM00873	B3/4 domain
ALX04_RS02525	SM00874	tRNA synthetase B5 domain
ALX04_RS02525	SM00896	Ferredoxin-fold anticodon binding domain
ALX04_RS02560	SM00850	LytTr DNA-binding domain
ALX04_RS02610	SM00450	Rhodanese Homology Domain
ALX04_RS02630	SM00422	helix_turn_helix, mercury resistance
ALX04_RS02635	SM01230	ALX04_RS02635
ALX04_RS02705	SM00841	Elongation factor P, C-terminal
ALX04_RS02705	SM01185	ALX04_RS02705
ALX04_RS02740	SM00363	S4 RNA-binding domain
ALX04_RS02755	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALX04_RS02755	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS02780	SM00072	Guanylate kinase homologues.
ALX04_RS02785	SM01409	ALX04_RS02785
ALX04_RS02795	SM00487	DEAD-like helicases superfamily
ALX04_RS02795	SM00490	helicase superfamily c-terminal domain
ALX04_RS02810	SM00331	Sigma factor PP2C-like phosphatases
ALX04_RS02810	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ALX04_RS02815	SM00220	Serine/Threonine protein kinases, catalytic domain
ALX04_RS02815	SM00740	ALX04_RS02815
ALX04_RS02830	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
ALX04_RS02845	SM01120	ALX04_RS02845
ALX04_RS02845	SM01121	ALX04_RS02845
ALX04_RS02850	SM00487	DEAD-like helicases superfamily
ALX04_RS02850	SM00490	helicase superfamily c-terminal domain
ALX04_RS02865	SM00358	Double-stranded RNA binding motif
ALX04_RS02865	SM00535	Ribonuclease III family
ALX04_RS02870	SM00968	SMC proteins Flexible Hinge Domain
ALX04_RS02875	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS02875	SM00962	SRP54-type protein, GTPase domain
ALX04_RS02875	SM00963	SRP54-type protein, helical bundle domain
ALX04_RS02885	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS02885	SM00962	SRP54-type protein, GTPase domain
ALX04_RS02885	SM00963	SRP54-type protein, helical bundle domain
ALX04_RS02930	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS02980	SM00829	Enoylreductase
ALX04_RS03000	SM00829	Enoylreductase
ALX04_RS03015	SM00342	helix_turn_helix, arabinose operon control protein
ALX04_RS03035	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ALX04_RS03040	SM00822	ALX04_RS03040
ALX04_RS03045	SM00825	Beta-ketoacyl synthase
ALX04_RS03060	SM00878	Biotin carboxylase C-terminal domain
ALX04_RS03115	SM00244	prohibitin homologues
ALX04_RS03190	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ALX04_RS03325	SM00479	ALX04_RS03325
ALX04_RS03325	SM00491	ALX04_RS03325
ALX04_RS03355	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS03355	SM00930	ALX04_RS03355
ALX04_RS03385	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS03415	SM00981	ALX04_RS03415
ALX04_RS03420	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS03475	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS03515	SM00363	S4 RNA-binding domain
ALX04_RS03525	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ALX04_RS03530	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ALX04_RS03535	SM00855	Phosphoglycerate mutase family
ALX04_RS03565	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS03580	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS03695	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS03740	SM01131	ALX04_RS03740
ALX04_RS03750	SM00434	DNA Topoisomerase IV
ALX04_RS03755	SM00387	Histidine kinase-like ATPases
ALX04_RS03755	SM00433	TopoisomeraseII
ALX04_RS03760	SM01207	ALX04_RS03760
ALX04_RS03770	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS03770	SM01086	C-terminal, D2-small domain, of ClpB protein
ALX04_RS03790	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ALX04_RS03790	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ALX04_RS03790	SM00493	ALX04_RS03790
ALX04_RS03840	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALX04_RS03840	SM00245	tail specific protease
ALX04_RS03875	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS03900	SM00028	Tetratricopeptide repeats
ALX04_RS03905	SM00411	bacterial (prokaryotic) histone like domain
ALX04_RS03920	SM00316	Ribosomal protein S1-like RNA-binding domain
ALX04_RS03930	SM00257	Lysin motif
ALX04_RS03935	SM00487	DEAD-like helicases superfamily
ALX04_RS03935	SM00490	helicase superfamily c-terminal domain
ALX04_RS03955	SM00363	S4 RNA-binding domain
ALX04_RS04000	SM00481	DNA polymerase alpha chain like domain
ALX04_RS04010	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS04010	SM01086	C-terminal, D2-small domain, of ClpB protein
ALX04_RS04040	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS04045	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS04055	SM00450	Rhodanese Homology Domain
ALX04_RS04060	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS04075	SM00829	Enoylreductase
ALX04_RS04085	SM01192	ALX04_RS04085
ALX04_RS04085	SM01193	ALX04_RS04085
ALX04_RS04095	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS04110	SM00420	helix_turn_helix, Deoxyribose operon repressor
ALX04_RS04110	SM01134	ALX04_RS04110
ALX04_RS04195	SM01266	ALX04_RS04195
ALX04_RS04225	SM00829	Enoylreductase
ALX04_RS04240	SM00421	helix_turn_helix, Lux Regulon
ALX04_RS04240	SM00448	cheY-homologous receiver domain
ALX04_RS04255	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS04270	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS04295	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS04315	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS04320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS04335	SM00400	zinc finger
ALX04_RS04335	SM00493	ALX04_RS04335
ALX04_RS04395	SM00518	AP endonuclease family 2
ALX04_RS04425	SM00287	Bacterial SH3 domain homologues
ALX04_RS04425	SM00646	ALX04_RS04425
ALX04_RS04445	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALX04_RS04445	SM00954	Region found in RelA / SpoT proteins
ALX04_RS04480	SM00838	Elongation factor G C-terminus
ALX04_RS04515	SM00271	DnaJ molecular chaperone homology domain
ALX04_RS04540	SM00904	Riboflavin kinase
ALX04_RS04575	SM00830	Chorismate mutase type II
ALX04_RS04600	SM00316	Ribosomal protein S1-like RNA-binding domain
ALX04_RS04600	SM00322	K homology RNA-binding domain
ALX04_RS04610	SM00479	ALX04_RS04610
ALX04_RS04610	SM00481	DNA polymerase alpha chain like domain
ALX04_RS04620	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALX04_RS04680	SM00563	Phosphate acyltransferases
ALX04_RS04740	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS04770	SM00257	Lysin motif
ALX04_RS04770	SM00641	Glycosyl hydrolases family 25
ALX04_RS04870	SM00507	HNH nucleases
ALX04_RS04915	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS04980	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS05075	SM00822	ALX04_RS05075
ALX04_RS05095	SM00420	helix_turn_helix, Deoxyribose operon repressor
ALX04_RS05095	SM01134	ALX04_RS05095
ALX04_RS05165	SM00465	GIY-YIG type nucleases (URI domain)
ALX04_RS05170	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS05175	SM00062	Bacterial periplasmic substrate-binding proteins
ALX04_RS05200	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS05200	SM00994	ClpX C4-type zinc finger
ALX04_RS05200	SM01086	C-terminal, D2-small domain, of ClpB protein
ALX04_RS05220	SM00849	Metallo-beta-lactamase superfamily
ALX04_RS05225	SM01130	ALX04_RS05225
ALX04_RS05235	SM01387	ALX04_RS05235
ALX04_RS05250	SM00849	Metallo-beta-lactamase superfamily
ALX04_RS05260	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ALX04_RS05285	SM00878	Biotin carboxylase C-terminal domain
ALX04_RS05310	SM00838	Elongation factor G C-terminus
ALX04_RS05340	SM00861	Transketolase, pyrimidine binding domain
ALX04_RS05365	SM00849	Metallo-beta-lactamase superfamily
ALX04_RS05370	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ALX04_RS05380	SM00257	Lysin motif
ALX04_RS05385	SM01400	ALX04_RS05385
ALX04_RS05390	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS05400	SM00855	Phosphoglycerate mutase family
ALX04_RS05470	SM00850	LytTr DNA-binding domain
ALX04_RS05480	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS05510	SM00864	Tubulin/FtsZ family, GTPase domain
ALX04_RS05510	SM00865	Tubulin/FtsZ family, C-terminal domain
ALX04_RS05515	SM00842	Cell division protein FtsA
ALX04_RS05540	SM00740	ALX04_RS05540
ALX04_RS05575	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS05575	SM00843	ALX04_RS05575
ALX04_RS05640	SM00954	Region found in RelA / SpoT proteins
ALX04_RS05670	SM00849	Metallo-beta-lactamase superfamily
ALX04_RS05810	SM00316	Ribosomal protein S1-like RNA-binding domain
ALX04_RS05920	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS05930	SM00422	helix_turn_helix, mercury resistance
ALX04_RS05990	SM00463	Small MutS-related domain
ALX04_RS05990	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ALX04_RS05990	SM00534	ATPase domain of DNA mismatch repair MUTS family
ALX04_RS06005	SM00732	Likely ribonuclease with RNase H fold.
ALX04_RS06015	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ALX04_RS06020	SM00487	DEAD-like helicases superfamily
ALX04_RS06020	SM00490	helicase superfamily c-terminal domain
ALX04_RS06035	SM01323	ALX04_RS06035
ALX04_RS06050	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS06055	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ALX04_RS06085	SM00853	MutL C terminal dimerisation domain
ALX04_RS06085	SM01340	ALX04_RS06085
ALX04_RS06090	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ALX04_RS06090	SM00534	ATPase domain of DNA mismatch repair MUTS family
ALX04_RS06100	SM00322	K homology RNA-binding domain
ALX04_RS06100	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALX04_RS06105	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS06110	SM00852	Probable molybdopterin binding domain
ALX04_RS06150	SM00062	Bacterial periplasmic substrate-binding proteins
ALX04_RS06155	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS06215	SM00981	ALX04_RS06215
ALX04_RS06240	SM00363	S4 RNA-binding domain
ALX04_RS06240	SM01390	ALX04_RS06240
ALX04_RS06260	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS06265	SM00642	Alpha-amylase domain
ALX04_RS06290	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS06300	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS06325	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS06340	SM00829	Enoylreductase
ALX04_RS06365	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS06365	SM00930	ALX04_RS06365
ALX04_RS06385	SM01234	ALX04_RS06385
ALX04_RS06410	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS06475	SM00937	ALX04_RS06475
ALX04_RS06525	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS06530	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS06555	SM00257	Lysin motif
ALX04_RS06570	SM00257	Lysin motif
ALX04_RS06570	SM00287	Bacterial SH3 domain homologues
ALX04_RS06795	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS06800	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS06810	SM00974	ALX04_RS06810
ALX04_RS06925	SM00507	HNH nucleases
ALX04_RS06945	SM00942	Primase C terminal 1 (PriCT-1)
ALX04_RS06945	SM00943	Bifunctional DNA primase/polymerase, N-terminal
ALX04_RS06970	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS06990	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS07055	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS07065	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS07090	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ALX04_RS07090	SM00387	Histidine kinase-like ATPases
ALX04_RS07090	SM00388	His Kinase A (phosphoacceptor) domain
ALX04_RS07095	SM00448	cheY-homologous receiver domain
ALX04_RS07095	SM00862	Transcriptional regulatory protein, C terminal
ALX04_RS07155	SM00344	helix_turn_helix ASNC type
ALX04_RS07170	SM00267	diguanylate cyclase
ALX04_RS07175	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS07245	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS07265	SM01266	ALX04_RS07265
ALX04_RS07340	SM00422	helix_turn_helix, mercury resistance
ALX04_RS07355	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ALX04_RS07445	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS07470	SM00861	Transketolase, pyrimidine binding domain
ALX04_RS07490	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS07495	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS07520	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS07605	SM00047	Lysozyme subfamily 2
ALX04_RS07605	SM00287	Bacterial SH3 domain homologues
ALX04_RS07635	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS07660	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS07660	SM00866	ALX04_RS07660
ALX04_RS07675	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALX04_RS07680	SM00448	cheY-homologous receiver domain
ALX04_RS07680	SM00850	LytTr DNA-binding domain
ALX04_RS07705	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALX04_RS07705	SM01091	Transporter associated domain
ALX04_RS07725	SM00422	helix_turn_helix, mercury resistance
ALX04_RS07730	SM00829	Enoylreductase
ALX04_RS07750	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS07760	SM01130	ALX04_RS07760
ALX04_RS07810	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ALX04_RS07820	SM00851	MGS-like domain
ALX04_RS07820	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ALX04_RS07825	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ALX04_RS07865	SM00052	Putative diguanylate phosphodiesterase
ALX04_RS07885	SM01209	ALX04_RS07885
ALX04_RS07885	SM01210	ALX04_RS07885
ALX04_RS07890	SM00798	AICARFT/IMPCHase bienzyme
ALX04_RS07890	SM00851	MGS-like domain
ALX04_RS07915	SM01211	ALX04_RS07915
ALX04_RS07935	SM01001	AIR carboxylase
ALX04_RS07960	SM01057	Eukaryotic-type carbonic anhydrase
ALX04_RS07970	SM00870	ALX04_RS07970
ALX04_RS07975	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS07990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS07995	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS08060	SM00642	Alpha-amylase domain
ALX04_RS08080	SM01266	ALX04_RS08080
ALX04_RS08140	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS08170	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS08170	SM00866	ALX04_RS08170
ALX04_RS08180	SM00855	Phosphoglycerate mutase family
ALX04_RS08250	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS08295	SM00363	S4 RNA-binding domain
ALX04_RS08360	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS08445	SM00257	Lysin motif
ALX04_RS08450	SM00257	Lysin motif
ALX04_RS08475	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS08485	SM00822	ALX04_RS08485
ALX04_RS08500	SM00422	helix_turn_helix, mercury resistance
ALX04_RS08515	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS08520	SM00478	endonuclease III
ALX04_RS08525	SM01266	ALX04_RS08525
ALX04_RS08560	SM00855	Phosphoglycerate mutase family
ALX04_RS08655	SM00822	ALX04_RS08655
ALX04_RS08700	SM01266	ALX04_RS08700
ALX04_RS08735	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS08740	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS08770	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS08780	SM00892	DNA/RNA non-specific endonuclease
ALX04_RS08805	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS08830	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS08870	SM01117	ALX04_RS08870
ALX04_RS08880	SM00267	diguanylate cyclase
ALX04_RS08885	SM00052	Putative diguanylate phosphodiesterase
ALX04_RS09035	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS09040	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS09040	SM00529	Helix-turn-helix diphteria tox regulatory element
ALX04_RS09055	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS09090	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALX04_RS09095	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS09100	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS09125	SM00235	Zinc-dependent metalloprotease
ALX04_RS09135	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS09160	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS09180	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS09205	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS09240	SM00422	helix_turn_helix, mercury resistance
ALX04_RS09245	SM00257	Lysin motif
ALX04_RS09260	SM01022	ALX04_RS09260
ALX04_RS09280	SM00267	diguanylate cyclase
ALX04_RS09350	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS09355	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS09380	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS09410	SM00829	Enoylreductase
ALX04_RS09435	SM00342	helix_turn_helix, arabinose operon control protein
ALX04_RS09475	SM00829	Enoylreductase
ALX04_RS09540	SM00448	cheY-homologous receiver domain
ALX04_RS09540	SM00850	LytTr DNA-binding domain
ALX04_RS09570	SM00287	Bacterial SH3 domain homologues
ALX04_RS09590	SM00822	ALX04_RS09590
ALX04_RS09760	SM00849	Metallo-beta-lactamase superfamily
ALX04_RS09775	SM00855	Phosphoglycerate mutase family
ALX04_RS09805	SM00220	Serine/Threonine protein kinases, catalytic domain
ALX04_RS09850	SM00936	Penicillin-binding protein 5, C-terminal domain 
ALX04_RS09855	SM00387	Histidine kinase-like ATPases
ALX04_RS09855	SM00388	His Kinase A (phosphoacceptor) domain
ALX04_RS09860	SM00448	cheY-homologous receiver domain
ALX04_RS09860	SM00862	Transcriptional regulatory protein, C terminal
ALX04_RS09875	SM01240	ALX04_RS09875
ALX04_RS09895	SM00470	ParB-like nuclease domain
ALX04_RS09905	SM00470	ParB-like nuclease domain
ALX04_RS09940	SM00062	Bacterial periplasmic substrate-binding proteins
ALX04_RS09950	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS09955	SM00062	Bacterial periplasmic substrate-binding proteins
ALX04_RS09985	SM00642	Alpha-amylase domain
ALX04_RS09990	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS10010	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS10040	SM00872	Alpha mannosidase, middle domain
ALX04_RS10065	SM00422	helix_turn_helix, mercury resistance
ALX04_RS10080	SM00478	endonuclease III
ALX04_RS10185	SM00998	Adenylosuccinate lyase C-terminus
ALX04_RS10190	SM00788	Adenylosuccinate synthetase
ALX04_RS10195	SM01240	ALX04_RS10195
ALX04_RS10205	SM00155	Phospholipase D. Active site motifs.
ALX04_RS10275	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS10285	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS10330	SM00905	Dihydroneopterin aldolase
ALX04_RS10500	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS10520	SM00478	endonuclease III
ALX04_RS10655	SM00831	Cation transporter/ATPase, N-terminus
ALX04_RS10695	SM00506	Appr-1"-p processing enzyme
ALX04_RS10730	SM00342	helix_turn_helix, arabinose operon control protein
ALX04_RS10735	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS10760	SM00257	Lysin motif
ALX04_RS10860	SM00100	Cyclic nucleotide-monophosphate binding domain
ALX04_RS10860	SM00419	helix_turn_helix, cAMP Regulatory protein
ALX04_RS10960	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS10985	SM00342	helix_turn_helix, arabinose operon control protein
ALX04_RS10995	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS11000	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS11025	SM01038	Beta galactosidase small chain
ALX04_RS11045	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS11060	SM00900	ALX04_RS11060
ALX04_RS11130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS11130	SM00866	ALX04_RS11130
ALX04_RS11165	SM01061	CAT RNA binding domain
ALX04_RS11185	SM01061	CAT RNA binding domain
ALX04_RS11195	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS11225	SM00861	Transketolase, pyrimidine binding domain
ALX04_RS11260	SM00829	Enoylreductase
ALX04_RS11280	SM00420	helix_turn_helix, Deoxyribose operon repressor
ALX04_RS11280	SM01134	ALX04_RS11280
ALX04_RS11295	SM01266	ALX04_RS11295
ALX04_RS11305	SM01007	Class II Aldolase and Adducin N-terminal domain
ALX04_RS11320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS11360	SM01060	ALX04_RS11360
ALX04_RS11370	SM00448	cheY-homologous receiver domain
ALX04_RS11370	SM00850	LytTr DNA-binding domain
ALX04_RS11385	SM00793	Accessory gene regulator B
ALX04_RS11390	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS11390	SM01086	C-terminal, D2-small domain, of ClpB protein
ALX04_RS11445	SM00822	ALX04_RS11445
ALX04_RS11465	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS11505	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS11540	SM01228	ALX04_RS11540
ALX04_RS11550	SM00393	Putative single-stranded nucleic acids-binding domain
ALX04_RS11550	SM01245	ALX04_RS11550
ALX04_RS11570	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS11570	SM00760	Bacterial dnaA protein helix-turn-helix domain
ALX04_RS11575	SM00480	DNA polymerase III beta subunit
ALX04_RS11590	SM00387	Histidine kinase-like ATPases
ALX04_RS11590	SM00433	TopoisomeraseII
ALX04_RS11595	SM00434	DNA Topoisomerase IV
ALX04_RS11615	SM00267	diguanylate cyclase
ALX04_RS11675	SM00642	Alpha-amylase domain
ALX04_RS11700	SM00357	Cold shock protein domain
ALX04_RS11715	SM00448	cheY-homologous receiver domain
ALX04_RS11715	SM00862	Transcriptional regulatory protein, C terminal
ALX04_RS11720	SM00091	PAS domain
ALX04_RS11720	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ALX04_RS11720	SM00387	Histidine kinase-like ATPases
ALX04_RS11720	SM00388	His Kinase A (phosphoacceptor) domain
ALX04_RS11735	SM00849	Metallo-beta-lactamase superfamily
ALX04_RS11740	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALX04_RS11765	SM00986	Uracil DNA glycosylase superfamily
ALX04_RS11765	SM00987	UreE urease accessory protein, C-terminal domain 
ALX04_RS11785	SM00900	ALX04_RS11785
ALX04_RS11805	SM00226	Low molecular weight phosphatase family
ALX04_RS11860	SM01022	ALX04_RS11860
ALX04_RS11880	SM00838	Elongation factor G C-terminus
ALX04_RS11880	SM00889	Elongation factor G, domain IV
ALX04_RS11910	SM00829	Enoylreductase
ALX04_RS11915	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS11980	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS11995	SM00419	helix_turn_helix, cAMP Regulatory protein
ALX04_RS12005	SM01001	AIR carboxylase
ALX04_RS12030	SM00829	Enoylreductase
ALX04_RS12060	SM00910	ALX04_RS12060
ALX04_RS12105	SM00831	Cation transporter/ATPase, N-terminus
ALX04_RS12125	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS12140	SM00850	LytTr DNA-binding domain
ALX04_RS12150	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS12200	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS12215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS12215	SM00866	ALX04_RS12215
ALX04_RS12245	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS12285	SM01120	ALX04_RS12285
ALX04_RS12300	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS12305	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS12310	SM00642	Alpha-amylase domain
ALX04_RS12335	SM00642	Alpha-amylase domain
ALX04_RS12340	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS12350	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ALX04_RS12350	SM00231	Coagulation factor 5/8 C-terminal domain, discoidin domain
ALX04_RS12375	SM00640	Glycosyl hydrolases family 32
ALX04_RS12380	SM00354	helix_turn _helix lactose operon repressor
ALX04_RS12385	SM00642	Alpha-amylase domain
ALX04_RS12390	SM00829	Enoylreductase
ALX04_RS12400	SM00642	Alpha-amylase domain
ALX04_RS12415	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS12445	SM00855	Phosphoglycerate mutase family
ALX04_RS12490	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS12500	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS12530	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS12550	SM00342	helix_turn_helix, arabinose operon control protein
ALX04_RS12605	SM00562	ALX04_RS12605
ALX04_RS12620	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS12620	SM00866	ALX04_RS12620
ALX04_RS12700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS12700	SM00866	ALX04_RS12700
ALX04_RS12705	SM00642	Alpha-amylase domain
ALX04_RS12795	SM00422	helix_turn_helix, mercury resistance
ALX04_RS12800	SM00387	Histidine kinase-like ATPases
ALX04_RS12800	SM00388	His Kinase A (phosphoacceptor) domain
ALX04_RS12805	SM00448	cheY-homologous receiver domain
ALX04_RS12805	SM00862	Transcriptional regulatory protein, C terminal
ALX04_RS12850	SM00954	Region found in RelA / SpoT proteins
ALX04_RS12880	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS12895	SM00257	Lysin motif
ALX04_RS12900	SM00257	Lysin motif
ALX04_RS12920	SM00488	ALX04_RS12920
ALX04_RS12920	SM00491	ALX04_RS12920
ALX04_RS12940	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS12970	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS12975	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS12980	SM01022	ALX04_RS12980
ALX04_RS13000	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS13005	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13030	SM00244	prohibitin homologues
ALX04_RS13080	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13115	SM00235	Zinc-dependent metalloprotease
ALX04_RS13140	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13185	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13305	SM01266	ALX04_RS13305
ALX04_RS13320	SM00342	helix_turn_helix, arabinose operon control protein
ALX04_RS13370	SM00387	Histidine kinase-like ATPases
ALX04_RS13375	SM00448	cheY-homologous receiver domain
ALX04_RS13375	SM00850	LytTr DNA-binding domain
ALX04_RS13395	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS13445	SM00866	ALX04_RS13445
ALX04_RS13535	SM00493	ALX04_RS13535
ALX04_RS13540	SM00650	Ribosomal RNA adenine dimethylases
ALX04_RS13560	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13585	SM01400	ALX04_RS13585
ALX04_RS13605	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALX04_RS13670	SM00357	Cold shock protein domain
ALX04_RS13670	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13670	SM00959	Rho termination factor, N-terminal domain
ALX04_RS13710	SM00487	DEAD-like helicases superfamily
ALX04_RS13710	SM00490	helicase superfamily c-terminal domain
ALX04_RS13725	SM01005	Alanine racemase, C-terminal domain
ALX04_RS13750	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13755	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ALX04_RS13760	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ALX04_RS13765	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ALX04_RS13815	SM00487	DEAD-like helicases superfamily
ALX04_RS13815	SM00490	helicase superfamily c-terminal domain
ALX04_RS13815	SM00982	ALX04_RS13815
ALX04_RS13815	SM01058	CarD-like/TRCF domain
ALX04_RS13825	SM00363	S4 RNA-binding domain
ALX04_RS13835	SM00316	Ribosomal protein S1-like RNA-binding domain
ALX04_RS13840	SM00977	TilS substrate C-terminal domain
ALX04_RS13850	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS13930	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS13965	SM00942	Primase C terminal 1 (PriCT-1)
ALX04_RS13965	SM00943	Bifunctional DNA primase/polymerase, N-terminal
ALX04_RS14060	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALX04_RS14060	SM00866	ALX04_RS14060
ALX04_RS14080	SM00831	Cation transporter/ATPase, N-terminus
ALX04_RS14090	SM00316	Ribosomal protein S1-like RNA-binding domain
ALX04_RS14090	SM00732	Likely ribonuclease with RNase H fold.
ALX04_RS14095	SM00731	SprT homologues.
ALX04_RS14140	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14165	SM00878	Biotin carboxylase C-terminal domain
ALX04_RS14195	SM00855	Phosphoglycerate mutase family
ALX04_RS14200	SM00235	Zinc-dependent metalloprotease
ALX04_RS14235	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14240	SM00670	Large family of predicted nucleotide-binding domains
ALX04_RS14250	SM00840	ALX04_RS14250
ALX04_RS14260	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ALX04_RS14285	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ALX04_RS14285	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ALX04_RS14295	SM00649	Ribosomal protein L11/L12
ALX04_RS14365	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14375	SM00493	ALX04_RS14375
ALX04_RS14440	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14475	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14480	SM00881	CoA binding domain
ALX04_RS14490	SM00883	Chaperonin 10 Kd subunit
ALX04_RS14520	SM00487	DEAD-like helicases superfamily
ALX04_RS14520	SM00490	helicase superfamily c-terminal domain
ALX04_RS14535	SM00957	SecA DEAD-like domain
ALX04_RS14535	SM00958	SecA preprotein cross-linking domain
ALX04_RS14540	SM00937	ALX04_RS14540
ALX04_RS14550	SM00448	cheY-homologous receiver domain
ALX04_RS14550	SM00862	Transcriptional regulatory protein, C terminal
ALX04_RS14555	SM00387	Histidine kinase-like ATPases
ALX04_RS14555	SM00388	His Kinase A (phosphoacceptor) domain
ALX04_RS14575	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14580	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14620	SM00052	Putative diguanylate phosphodiesterase
ALX04_RS14650	SM00052	Putative diguanylate phosphodiesterase
ALX04_RS14675	SM00487	DEAD-like helicases superfamily
ALX04_RS14675	SM00490	helicase superfamily c-terminal domain
ALX04_RS14680	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14750	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ALX04_RS14765	SM01192	ALX04_RS14765
ALX04_RS14765	SM01193	ALX04_RS14765
ALX04_RS14795	SM00316	Ribosomal protein S1-like RNA-binding domain
ALX04_RS14795	SM00955	ALX04_RS14795
ALX04_RS14810	SM00062	Bacterial periplasmic substrate-binding proteins
ALX04_RS14810	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ALX04_RS14815	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS14830	SM00986	Uracil DNA glycosylase superfamily
ALX04_RS14830	SM00987	UreE urease accessory protein, C-terminal domain 
ALX04_RS14850	SM00479	ALX04_RS14850
ALX04_RS14875	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS14905	SM00052	Putative diguanylate phosphodiesterase
ALX04_RS15010	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS15055	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ALX04_RS15055	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
ALX04_RS15095	SM00072	Guanylate kinase homologues.
ALX04_RS15140	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS15145	SM00062	Bacterial periplasmic substrate-binding proteins
ALX04_RS15145	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ALX04_RS15170	SM01061	CAT RNA binding domain
ALX04_RS15195	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS15205	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS15245	SM00855	Phosphoglycerate mutase family
ALX04_RS15250	SM00855	Phosphoglycerate mutase family
ALX04_RS15295	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS15375	SM00487	DEAD-like helicases superfamily
ALX04_RS15405	SM00855	Phosphoglycerate mutase family
ALX04_RS15430	SM00857	Resolvase, N terminal domain
ALX04_RS15485	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALX04_RS15485	SM00450	Rhodanese Homology Domain
ALX04_RS15525	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS15650	SM00831	Cation transporter/ATPase, N-terminus
ALX04_RS15680	SM00530	Helix-turn-helix XRE-family like proteins 
ALX04_RS15720	SM00487	DEAD-like helicases superfamily
ALX04_RS15720	SM00490	helicase superfamily c-terminal domain
ALX04_RS15765	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS15850	SM00257	Lysin motif
ALX04_RS15865	SM00382	ATPases associated with a variety of cellular activities
ALX04_RS15985	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ALX04_RS15990	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALX04_RS16005	SM00901	ALX04_RS16005
ALX04_RS16015	SM00448	cheY-homologous receiver domain
ALX04_RS16015	SM00862	Transcriptional regulatory protein, C terminal
ALX04_RS16025	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALX04_RS16030	SM00857	Resolvase, N terminal domain
ALX04_RS16070	SM00857	Resolvase, N terminal domain
