locus-tag	class	description
LLJM4_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LLJM4_RS00010	COG0592	DNA-directed DNA polymerase activity
LLJM4_RS00035	COG0012	GTP binding
LLJM4_RS00055	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LLJM4_RS00060	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LLJM4_RS00080	COG0037	tRNA processing
LLJM4_RS00085	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
LLJM4_RS00090	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LLJM4_RS00135	COG2213	PTS system mannitol-specific
LLJM4_RS00200	COG0454	-acetyltransferase
LLJM4_RS00210	COG0659	secondary active sulfate transmembrane transporter activity
LLJM4_RS00225	COG0436	Aminotransferase
LLJM4_RS00255	COG0095	Lipoate-protein ligase
LLJM4_RS00260	COG0584	glycerophosphoryl diester phosphodiesterase
LLJM4_RS00280	COG0180	Tryptophanyl-tRNA synthetase
LLJM4_RS00285	COG1764	response to oxidative stress
LLJM4_RS00305	COG0488	(ABC) transporter
LLJM4_RS00315	COG4221	oxidoreductase activity
LLJM4_RS00320	COG1309	transcriptional regulator
LLJM4_RS00340	COG4221	oxidoreductase activity
LLJM4_RS00360	COG0400	carboxylic ester hydrolase activity
LLJM4_RS00365	COG0346	lactoylglutathione lyase activity
LLJM4_RS00370	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LLJM4_RS00375	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LLJM4_RS00380	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LLJM4_RS00385	COG2217	Heavy metal translocating P-type atpase
LLJM4_RS00395	COG1475	DNA binding
LLJM4_RS00400	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LLJM4_RS00415	COG0488	(ABC) transporter
LLJM4_RS00440	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LLJM4_RS00445	COG0726	polysaccharide deacetylase
LLJM4_RS00470	COG1011	Hydrolase
LLJM4_RS00475	COG0531	amino acid
LLJM4_RS00480	COG0204	Acyl-transferase
LLJM4_RS00490	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LLJM4_RS00495	COG0653	protein targeting
LLJM4_RS00500	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LLJM4_RS00520	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
LLJM4_RS00555	COG2814	Major facilitator Superfamily
LLJM4_RS00620	COG0594	ribonuclease P activity
LLJM4_RS00625	COG0706	membrane insertase activity
LLJM4_RS00635	COG0230	Belongs to the bacterial ribosomal protein bL34 family
LLJM4_RS00640	COG4989	oxidoreductase activity
LLJM4_RS00655	COG1266	CAAX protease self-immunity
LLJM4_RS00660	COG4472	Bacterial protein of unknown function (DUF965)
LLJM4_RS00670	COG3906	Belongs to the UPF0473 family
LLJM4_RS00680	COG0300	oxidoreductase activity
LLJM4_RS00690	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
LLJM4_RS00695	COG1309	transcriptional regulator
LLJM4_RS00700	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LLJM4_RS00770	COG2814	Major facilitator Superfamily
LLJM4_RS00775	COG1832	CoA-binding protein
LLJM4_RS00800	COG0436	Aminotransferase
LLJM4_RS00805	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
LLJM4_RS00815	COG0154	amidase activity
LLJM4_RS00840	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LLJM4_RS00855	COG0346	lactoylglutathione lyase activity
LLJM4_RS00870	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LLJM4_RS00885	COG2723	6-phospho-beta-galactosidase activity
LLJM4_RS00890	COG0756	dUTP diphosphatase activity
LLJM4_RS00895	COG0737	Belongs to the 5'-nucleotidase family
LLJM4_RS00900	COG4470	Protein conserved in bacteria
LLJM4_RS00915	COG0142	geranyltranstransferase activity
LLJM4_RS00945	COG1461	Dihydroxyacetone kinase
LLJM4_RS00955	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LLJM4_RS00965	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LLJM4_RS00985	COG1088	dTDP-glucose 4,6-dehydratase activity
LLJM4_RS01000	COG1215	transferase activity, transferring glycosyl groups
LLJM4_RS01020	COG1216	Glycosyl transferase, family 2
LLJM4_RS01020	COG1442	glycosyl transferase family 8
LLJM4_RS01040	COG1216	Glycosyl transferase, family 2
LLJM4_RS01045	COG0438	transferase activity, transferring glycosyl groups
LLJM4_RS01055	COG0438	transferase activity, transferring glycosyl groups
LLJM4_RS01060	COG0562	UDP-galactopyranose mutase
LLJM4_RS01085	COG0516	GMP reductase activity
LLJM4_RS01085	COG0517	IMP dehydrogenase activity
LLJM4_RS01090	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LLJM4_RS01100	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LLJM4_RS01110	COG1534	Rna-binding protein
LLJM4_RS01120	COG1713	HD superfamily hydrolase involved in NAD metabolism
LLJM4_RS01130	COG0799	negative regulation of ribosome biogenesis
LLJM4_RS01135	COG2226	methyltransferase
LLJM4_RS01175	COG1309	transcriptional regulator
LLJM4_RS01180	COG0477	Major facilitator Superfamily
LLJM4_RS01185	COG0789	Transcriptional regulator
LLJM4_RS01190	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LLJM4_RS01210	COG2376	Dihydroxyacetone kinase
LLJM4_RS01215	COG1309	transcriptional regulator
LLJM4_RS01220	COG2376	Dihydroxyacetone kinase
LLJM4_RS01225	COG1461	Dihydroxyacetone kinase
LLJM4_RS01230	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
LLJM4_RS01235	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LLJM4_RS01240	COG4690	dipeptidase activity
LLJM4_RS01245	COG1131	(ABC) transporter
LLJM4_RS01255	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LLJM4_RS01270	COG2081	HI0933 family
LLJM4_RS01275	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LLJM4_RS01295	COG1132	(ABC) transporter
LLJM4_RS01305	COG0673	inositol 2-dehydrogenase activity
LLJM4_RS01310	COG1854	S-ribosylhomocysteine lyase activity
LLJM4_RS01320	COG0656	L-ascorbic acid biosynthetic process
LLJM4_RS01325	COG1335	isochorismatase
LLJM4_RS01345	COG1328	CTP reductase activity
LLJM4_RS01380	COG1122	ATPase activity
LLJM4_RS01390	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LLJM4_RS01415	COG0726	polysaccharide deacetylase
LLJM4_RS01435	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LLJM4_RS01440	COG2183	response to ionizing radiation
LLJM4_RS01445	COG3091	SprT-like family
LLJM4_RS01450	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LLJM4_RS01470	COG5503	Protein of unknown function (DUF1447)
LLJM4_RS01485	COG0456	acetyltransferase
LLJM4_RS01515	COG0582	viral genome integration into host DNA
LLJM4_RS01565	COG3639	organic phosphonate transmembrane transporter activity
LLJM4_RS01570	COG3639	organic phosphonate transmembrane transporter activity
LLJM4_RS01575	COG0737	Belongs to the 5'-nucleotidase family
LLJM4_RS01595	COG1846	Transcriptional regulator
LLJM4_RS01600	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LLJM4_RS01610	COG1132	(ABC) transporter
LLJM4_RS01615	COG1132	(ABC) transporter
LLJM4_RS01620	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LLJM4_RS01625	COG4443	Transcriptional Coactivator p15 (PC4)
LLJM4_RS01655	COG1268	BioY protein
LLJM4_RS01660	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LLJM4_RS01665	COG3859	Proton-coupled thiamine transporter YuaJ
LLJM4_RS01670	COG1464	Belongs to the NlpA lipoprotein family
LLJM4_RS01680	COG1464	Belongs to the NlpA lipoprotein family
LLJM4_RS01690	COG1464	Belongs to the NlpA lipoprotein family
LLJM4_RS01700	COG2011	ABC-type metal ion transport system permease component
LLJM4_RS01710	COG1122	ATPase activity
LLJM4_RS01725	COG1120	ATPase activity
LLJM4_RS01730	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LLJM4_RS01735	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LLJM4_RS01740	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LLJM4_RS01755	COG2814	Major facilitator Superfamily
LLJM4_RS01760	COG0656	L-ascorbic acid biosynthetic process
LLJM4_RS01765	COG1733	regulation of RNA biosynthetic process
LLJM4_RS01770	COG0346	lactoylglutathione lyase activity
LLJM4_RS01775	COG0588	phosphoglycerate mutase activity
LLJM4_RS01780	COG0450	alkyl hydroperoxide reductase
LLJM4_RS01785	COG3634	alkyl hydroperoxide reductase activity
LLJM4_RS01790	COG0768	penicillin binding
LLJM4_RS01795	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LLJM4_RS01805	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LLJM4_RS01815	COG4166	transmembrane transport
LLJM4_RS01820	COG0601	transmembrane transport
LLJM4_RS01825	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LLJM4_RS01830	COG0444	Belongs to the ABC transporter superfamily
LLJM4_RS01835	COG4608	Belongs to the ABC transporter superfamily
LLJM4_RS01845	COG0513	Belongs to the DEAD box helicase family
LLJM4_RS01855	COG0367	asparagine synthase
LLJM4_RS01865	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LLJM4_RS01870	COG1113	amino acid transport
LLJM4_RS01875	COG1113	amino acid transport
LLJM4_RS01905	COG2357	RelA SpoT domain protein
LLJM4_RS01915	COG0564	pseudouridine synthase activity
LLJM4_RS01930	COG0833	amino acid
LLJM4_RS01960	COG2855	membrane
LLJM4_RS01970	COG0583	DNA-binding transcription factor activity
LLJM4_RS01985	COG0301	tRNA thio-modification
LLJM4_RS02000	COG1764	response to oxidative stress
LLJM4_RS02005	COG0025	NhaP-type Na H and K H
LLJM4_RS02020	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LLJM4_RS02025	COG1363	Peptidase, m42
LLJM4_RS02035	COG3118	belongs to the thioredoxin family
LLJM4_RS02040	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LLJM4_RS02045	COG0446	pyridine nucleotide-disulphide oxidoreductase
LLJM4_RS02065	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LLJM4_RS02075	COG5002	protein histidine kinase activity
LLJM4_RS02080	COG0745	RESPONSE REGULATOR receiver
LLJM4_RS02090	COG0470	DNA polymerase III
LLJM4_RS02095	COG1774	PSP1 C-terminal conserved region
LLJM4_RS02125	COG1846	Transcriptional regulator
LLJM4_RS02130	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LLJM4_RS02145	COG1304	FMN binding
LLJM4_RS02150	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LLJM4_RS02155	COG1966	Carbon starvation protein
LLJM4_RS02160	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LLJM4_RS02170	COG0513	Belongs to the DEAD box helicase family
LLJM4_RS02180	COG1737	Transcriptional regulator
LLJM4_RS02185	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LLJM4_RS02190	COG1447	Phosphotransferase system cellobiose-specific component IIA
LLJM4_RS02200	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LLJM4_RS02205	COG2723	6-phospho-beta-galactosidase activity
LLJM4_RS02225	COG1597	lipid kinase activity
LLJM4_RS02230	COG3842	ATPase activity
LLJM4_RS02260	COG2188	Transcriptional regulator
LLJM4_RS02265	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LLJM4_RS02265	COG1263	PTS System
LLJM4_RS02265	COG2190	(PTS) system
LLJM4_RS02270	COG1263	PTS System
LLJM4_RS02270	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LLJM4_RS02275	COG1554	hydrolase, family 65, central catalytic
LLJM4_RS02280	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LLJM4_RS02295	COG0802	atpase or kinase
LLJM4_RS02305	COG1316	TRANSCRIPTIONal
LLJM4_RS02320	COG0351	phosphomethylpyrimidine kinase
LLJM4_RS02335	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LLJM4_RS02340	COG0504	CTP synthase activity
LLJM4_RS02440	COG1428	Deoxynucleoside kinase
LLJM4_RS02455	COG0587	DNA-directed DNA polymerase activity
LLJM4_RS02460	COG1272	protein, Hemolysin III
LLJM4_RS02465	COG1307	EDD domain protein, DegV family
LLJM4_RS02470	COG2755	lipolytic protein G-D-S-L family
LLJM4_RS02475	COG1472	Belongs to the glycosyl hydrolase 3 family
LLJM4_RS02485	COG0776	regulation of translation
LLJM4_RS02490	COG0456	acetyltransferase
LLJM4_RS02495	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LLJM4_RS02500	COG2169	Transcriptional regulator
LLJM4_RS02530	COG1104	cysteine desulfurase activity
LLJM4_RS02535	COG3883	PFAM NLP P60 protein
LLJM4_RS02535	COG0791	NLP P60 protein
LLJM4_RS02540	COG4166	transmembrane transport
LLJM4_RS02550	COG1388	LysM domain
LLJM4_RS02550	COG1705	Flagellar rod assembly protein muramidase FlgJ
LLJM4_RS02570	COG4474	Belongs to the UPF0398 family
LLJM4_RS02575	COG1393	Belongs to the ArsC family
LLJM4_RS02580	COG4476	Belongs to the UPF0223 family
LLJM4_RS02585	COG0483	inositol monophosphate 1-phosphatase activity
LLJM4_RS02590	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LLJM4_RS02695	COG0358	DNA primase activity
LLJM4_RS02700	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LLJM4_RS02730	COG0542	response to heat
LLJM4_RS02735	COG1959	2 iron, 2 sulfur cluster binding
LLJM4_RS02740	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LLJM4_RS02750	COG0242	peptide deformylase activity
LLJM4_RS02755	COG0494	nUDIX hydrolase
LLJM4_RS02765	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LLJM4_RS02775	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LLJM4_RS02780	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LLJM4_RS02785	COG0706	membrane insertase activity
LLJM4_RS02795	COG4684	Psort location CytoplasmicMembrane, score
LLJM4_RS02800	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LLJM4_RS02810	COG1942	4-Oxalocrotonate Tautomerase
LLJM4_RS02855	COG1435	thymidine kinase activity
LLJM4_RS02875	COG0778	Nitroreductase
LLJM4_RS02880	COG2890	protein-(glutamine-N5) methyltransferase activity
LLJM4_RS02890	COG0009	L-threonylcarbamoyladenylate synthase
LLJM4_RS02900	COG0741	lytic transglycosylase activity
LLJM4_RS02910	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LLJM4_RS02915	COG0560	Phosphoserine phosphatase
LLJM4_RS02920	COG1254	Belongs to the acylphosphatase family
LLJM4_RS02925	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LLJM4_RS02940	COG0789	Transcriptional regulator
LLJM4_RS02950	COG0716	FMN binding
LLJM4_RS02965	COG0024	Methionine aminopeptidase
LLJM4_RS02975	COG2246	polysaccharide biosynthetic process
LLJM4_RS02995	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
LLJM4_RS03000	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LLJM4_RS03010	COG4980	gas vesicle protein
LLJM4_RS03015	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LLJM4_RS03090	COG0300	oxidoreductase activity
LLJM4_RS03095	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LLJM4_RS03095	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
LLJM4_RS03100	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LLJM4_RS03105	COG3343	RNA polymerase activity
LLJM4_RS03110	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LLJM4_RS03115	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LLJM4_RS03130	COG0542	response to heat
LLJM4_RS03135	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LLJM4_RS03140	COG0148	phosphopyruvate hydratase activity
LLJM4_RS03150	COG0577	efflux transmembrane transporter activity
LLJM4_RS03160	COG0318	PFAM AMP-dependent synthetase and ligase
LLJM4_RS03170	COG1882	Formate acetyltransferase
LLJM4_RS03175	COG0237	dephospho-CoA kinase activity
LLJM4_RS03180	COG2814	Major facilitator Superfamily
LLJM4_RS03185	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LLJM4_RS03190	COG0772	Belongs to the SEDS family
LLJM4_RS03195	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
LLJM4_RS03205	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LLJM4_RS03215	COG0740	serine-type endopeptidase activity
LLJM4_RS03225	COG1393	Belongs to the ArsC family
LLJM4_RS03265	COG0726	polysaccharide deacetylase
LLJM4_RS03275	COG1114	Component of the transport system for branched-chain amino acids
LLJM4_RS03285	COG3592	Divergent 4Fe-4S mono-cluster
LLJM4_RS03290	COG0084	hydrolase, TatD family'
LLJM4_RS03300	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
LLJM4_RS03305	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LLJM4_RS03310	COG0006	proline dipeptidase activity
LLJM4_RS03315	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LLJM4_RS03325	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LLJM4_RS03330	COG1640	4-alpha-glucanotransferase
LLJM4_RS03340	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LLJM4_RS03345	COG0297	glycogen (starch) synthase activity
LLJM4_RS03350	COG0058	SHG alpha-glucan phosphorylase activity
LLJM4_RS03370	COG3104	oligopeptide transport
LLJM4_RS03380	COG1271	oxidase subunit
LLJM4_RS03385	COG1294	oxidase, subunit
LLJM4_RS03390	COG4988	ABC transporter
LLJM4_RS03395	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LLJM4_RS03400	COG1846	Transcriptional regulator
LLJM4_RS03475	COG1234	tRNA 3'-trailer cleavage
LLJM4_RS03530	COG1501	Belongs to the glycosyl hydrolase 31 family
LLJM4_RS03535	COG1609	Transcriptional regulator
LLJM4_RS03545	COG4948	Mandelate Racemase Muconate Lactonizing
LLJM4_RS03550	COG0318	PFAM AMP-dependent synthetase and ligase
LLJM4_RS03555	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LLJM4_RS03560	COG2267	carboxylic ester hydrolase activity
LLJM4_RS03570	COG1169	isochorismate synthase
LLJM4_RS03580	COG4109	DRTGG domain
LLJM4_RS03585	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LLJM4_RS03595	COG0252	asparaginase activity
LLJM4_RS03600	COG0561	phosphatase activity
LLJM4_RS03610	COG2268	Band 7 protein
LLJM4_RS03615	COG0527	aspartate kinase activity
LLJM4_RS03630	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LLJM4_RS03645	COG0305	Participates in initiation and elongation during chromosome replication
LLJM4_RS03665	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LLJM4_RS03675	COG1484	DNA-dependent DNA replication
LLJM4_RS03680	COG0778	Nitroreductase
LLJM4_RS03690	COG1160	GTP binding
LLJM4_RS03735	COG1346	cytolysis
LLJM4_RS03750	COG0195	Participates in both transcription termination and antitermination
LLJM4_RS03755	COG2740	Nucleic-acid-binding protein implicated in transcription termination
LLJM4_RS03770	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LLJM4_RS03775	COG1482	cell wall glycoprotein biosynthetic process
LLJM4_RS03790	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LLJM4_RS03795	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LLJM4_RS03800	COG1028	Short-chain dehydrogenase reductase Sdr
LLJM4_RS03805	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LLJM4_RS03820	COG0439	Biotin carboxylase
LLJM4_RS03850	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LLJM4_RS03855	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LLJM4_RS03860	COG0446	pyridine nucleotide-disulphide oxidoreductase
LLJM4_RS03865	COG1937	Protein conserved in bacteria
LLJM4_RS03870	COG1393	Belongs to the ArsC family
LLJM4_RS03875	COG1349	DNA-binding transcription factor activity
LLJM4_RS03885	COG0708	Exodeoxyribonuclease III
LLJM4_RS03890	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LLJM4_RS03890	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LLJM4_RS03900	COG1028	Short-chain dehydrogenase reductase Sdr
LLJM4_RS03910	COG4708	membrane
LLJM4_RS03915	COG2910	NAD(P)H-binding
LLJM4_RS03930	COG0542	response to heat
LLJM4_RS03935	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LLJM4_RS03940	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LLJM4_RS03965	COG0138	bifunctional purine biosynthesis protein purh
LLJM4_RS03970	COG1011	Hydrolase
LLJM4_RS03985	COG0151	Belongs to the GarS family
LLJM4_RS03995	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LLJM4_RS04010	COG2115	Belongs to the xylose isomerase family
LLJM4_RS04030	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LLJM4_RS04030	COG0519	Catalyzes the synthesis of GMP from XMP
LLJM4_RS04035	COG4209	transmembrane transport
LLJM4_RS04040	COG0395	ABC-type sugar transport system, permease component
LLJM4_RS04070	COG1846	Transcriptional regulator
LLJM4_RS04075	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LLJM4_RS04080	COG0300	oxidoreductase activity
LLJM4_RS04100	COG0735	belongs to the Fur family
LLJM4_RS04125	COG0778	Nitroreductase
LLJM4_RS04130	COG3759	membrane
LLJM4_RS04135	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LLJM4_RS04140	COG0512	Glutamine amidotransferase of anthranilate synthase
LLJM4_RS04145	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LLJM4_RS04180	COG0134	indole-3-glycerol-phosphate synthase activity
LLJM4_RS04185	COG0135	phosphoribosylanthranilate isomerase activity
LLJM4_RS04205	COG3711	transcriptional antiterminator
LLJM4_RS04210	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LLJM4_RS04210	COG2190	(PTS) system
LLJM4_RS04210	COG1263	PTS System
LLJM4_RS04215	COG2723	6-phospho-beta-galactosidase activity
LLJM4_RS04225	COG4175	Glycine betaine
LLJM4_RS04225	COG3448	diguanylate cyclase activity
LLJM4_RS04260	COG1475	DNA binding
LLJM4_RS04275	COG3223	Belongs to the PsiE family
LLJM4_RS04280	COG1072	(Pantothenic acid kinase))
LLJM4_RS04285	COG2813	Specifically methylates the guanine in position
LLJM4_RS04300	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LLJM4_RS04310	COG1744	ABC transporter substrate-binding protein PnrA-like
LLJM4_RS04315	COG2188	Transcriptional regulator
LLJM4_RS04330	COG0745	RESPONSE REGULATOR receiver
LLJM4_RS04335	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
LLJM4_RS04345	COG0582	viral genome integration into host DNA
LLJM4_RS04355	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LLJM4_RS04390	COG4712	double-strand break repair protein
LLJM4_RS04395	COG0629	single-stranded DNA binding
LLJM4_RS04410	COG2189	Belongs to the N(4) N(6)-methyltransferase family
LLJM4_RS04455	COG0756	dUTP diphosphatase activity
LLJM4_RS04605	COG4942	peptidase
LLJM4_RS04605	COG1388	LysM domain
LLJM4_RS04640	COG3942	CHAP domain
LLJM4_RS04640	COG1388	LysM domain
LLJM4_RS04670	COG0736	holo-[acyl-carrier-protein] synthase activity
LLJM4_RS04685	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LLJM4_RS04695	COG1174	glycine betaine transport
LLJM4_RS04725	COG2217	Heavy metal translocating P-type atpase
LLJM4_RS04730	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LLJM4_RS04735	COG1570	exodeoxyribonuclease VII activity
LLJM4_RS04750	COG1929	Belongs to the glycerate kinase type-1 family
LLJM4_RS04765	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
LLJM4_RS04770	COG1438	arginine binding
LLJM4_RS04775	COG0497	DNA recombination
LLJM4_RS04800	COG0275	rRNA processing
LLJM4_RS04810	COG0768	penicillin binding
LLJM4_RS04815	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LLJM4_RS04825	COG0577	efflux transmembrane transporter activity
LLJM4_RS04835	COG0583	DNA-binding transcription factor activity
LLJM4_RS04855	COG2357	RelA SpoT domain protein
LLJM4_RS04860	COG0335	large ribosomal subunit rRNA binding
LLJM4_RS04865	COG4319	ketosteroid isomerase
LLJM4_RS04880	COG1215	transferase activity, transferring glycosyl groups
LLJM4_RS04900	COG0589	response to stress
LLJM4_RS04930	COG2151	metal-sulfur cluster biosynthetic enzyme
LLJM4_RS04935	COG4974	Belongs to the 'phage' integrase family
LLJM4_RS04960	COG4585	Histidine kinase
LLJM4_RS04965	COG2197	response regulator
LLJM4_RS04980	COG0539	negative regulation of cytoplasmic translation
LLJM4_RS04990	COG0772	Belongs to the SEDS family
LLJM4_RS05005	COG0488	(ABC) transporter
LLJM4_RS05010	COG0281	malic enzyme
LLJM4_RS05045	COG0187	DNA topoisomerase II activity
LLJM4_RS05120	COG0582	viral genome integration into host DNA
LLJM4_RS05195	COG1316	TRANSCRIPTIONal
LLJM4_RS05210	COG0813	purine-nucleoside phosphorylase activity
LLJM4_RS05225	COG0393	Putative heavy-metal-binding
LLJM4_RS05240	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LLJM4_RS05245	COG0765	amino acid transport
LLJM4_RS05250	COG1126	abc transporter atp-binding protein
LLJM4_RS05260	COG0492	ferredoxin-NADP+ reductase activity
LLJM4_RS05270	COG0557	exoribonuclease II activity
LLJM4_RS05290	COG3830	Belongs to the UPF0237 family
LLJM4_RS05305	COG0588	phosphoglycerate mutase activity
LLJM4_RS05325	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LLJM4_RS05335	COG5617	Psort location CytoplasmicMembrane, score
LLJM4_RS05345	COG1473	amidohydrolase
LLJM4_RS05350	COG1349	DNA-binding transcription factor activity
LLJM4_RS05355	COG1105	Belongs to the carbohydrate kinase PfkB family
LLJM4_RS05360	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LLJM4_RS05360	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LLJM4_RS05360	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LLJM4_RS05405	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LLJM4_RS05410	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LLJM4_RS05420	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LLJM4_RS05425	COG1481	regulation of sporulation
LLJM4_RS05435	COG1131	(ABC) transporter
LLJM4_RS05445	COG2116	formate transmembrane transporter activity
LLJM4_RS05465	COG2884	Cell division ATP-binding protein ftsE
LLJM4_RS05470	COG2177	Part of the ABC transporter FtsEX involved in
LLJM4_RS05475	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LLJM4_RS05490	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LLJM4_RS05500	COG0187	DNA topoisomerase II activity
LLJM4_RS05515	COG2176	DNA-directed DNA polymerase activity
LLJM4_RS05520	COG2153	protein acetylation
LLJM4_RS05545	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LLJM4_RS05545	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LLJM4_RS05550	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LLJM4_RS05580	COG0564	pseudouridine synthase activity
LLJM4_RS05585	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
LLJM4_RS05600	COG0463	Glycosyl transferase, family 2
LLJM4_RS05605	COG0745	RESPONSE REGULATOR receiver
LLJM4_RS05615	COG5002	protein histidine kinase activity
LLJM4_RS05620	COG0671	phosphoesterase, PA-phosphatase related
LLJM4_RS05625	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LLJM4_RS05630	COG2003	Belongs to the UPF0758 family
LLJM4_RS05635	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
LLJM4_RS05640	COG1393	Belongs to the ArsC family
LLJM4_RS05645	COG0488	(ABC) transporter
LLJM4_RS05655	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LLJM4_RS05690	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LLJM4_RS05695	COG2384	SAM-dependent methyltransferase
LLJM4_RS05700	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LLJM4_RS05715	COG1078	dGTPase activity
LLJM4_RS05730	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LLJM4_RS05740	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LLJM4_RS05750	COG1702	phosphate starvation-inducible protein PhoH
LLJM4_RS05760	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LLJM4_RS05765	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LLJM4_RS05785	COG1739	Uncharacterized protein family UPF0029
LLJM4_RS05810	COG0737	Belongs to the 5'-nucleotidase family
LLJM4_RS05835	COG0038	chloride channel
LLJM4_RS05840	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LLJM4_RS05850	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LLJM4_RS05865	COG1136	(ABC) transporter
LLJM4_RS05875	COG3442	glutamine amidotransferase
LLJM4_RS05880	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LLJM4_RS05885	COG3527	Alpha-acetolactate decarboxylase
LLJM4_RS05895	COG0702	epimerase
LLJM4_RS05900	COG0531	amino acid
LLJM4_RS05955	COG3764	Sortase (surface protein transpeptidase)
LLJM4_RS05975	COG0210	DNA helicase
LLJM4_RS05985	COG0519	Catalyzes the synthesis of GMP from XMP
LLJM4_RS05995	COG1053	succinate dehydrogenase
LLJM4_RS06055	COG0196	riboflavin kinase activity
LLJM4_RS06060	COG0039	L-malate dehydrogenase activity
LLJM4_RS06070	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
LLJM4_RS06075	COG1263	PTS System
LLJM4_RS06075	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LLJM4_RS06080	COG1737	Transcriptional regulator
LLJM4_RS06105	COG1475	DNA binding
LLJM4_RS06110	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LLJM4_RS06130	COG0647	UMP catabolic process
LLJM4_RS06165	COG2233	PERMEase
LLJM4_RS06175	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LLJM4_RS06185	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LLJM4_RS06210	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LLJM4_RS06210	COG0302	gtp cyclohydrolase
LLJM4_RS06215	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LLJM4_RS06225	COG0285	dihydrofolate synthase activity
LLJM4_RS06230	COG1428	Deoxynucleoside kinase
LLJM4_RS06260	COG1176	ABC-type spermidine putrescine transport system, permease component I
LLJM4_RS06265	COG1177	transmembrane transport
LLJM4_RS06280	COG2207	Transcriptional regulator
LLJM4_RS06280	COG1917	Cupin 2, conserved barrel domain protein
LLJM4_RS06345	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LLJM4_RS06350	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
LLJM4_RS06355	COG2226	methyltransferase
LLJM4_RS06360	COG0628	permease
LLJM4_RS06370	COG0028	Belongs to the TPP enzyme family
LLJM4_RS06375	COG2814	Major facilitator Superfamily
LLJM4_RS06380	COG1733	regulation of RNA biosynthetic process
LLJM4_RS06395	COG0557	exoribonuclease II activity
LLJM4_RS06425	COG1461	Dihydroxyacetone kinase
LLJM4_RS06470	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LLJM4_RS06480	COG3231	kanamycin kinase activity
LLJM4_RS06485	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LLJM4_RS06500	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LLJM4_RS06500	COG0140	phosphoribosyl-ATP diphosphatase activity
LLJM4_RS06505	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LLJM4_RS06510	COG1054	Belongs to the UPF0176 family
LLJM4_RS06530	COG0473	3-isopropylmalate dehydrogenase activity
LLJM4_RS06555	COG0066	3-isopropylmalate dehydratase activity
LLJM4_RS06560	COG1119	ATPase activity
LLJM4_RS06570	COG0028	Belongs to the TPP enzyme family
LLJM4_RS06575	COG0440	acetolactate synthase activity
LLJM4_RS06580	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LLJM4_RS06585	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LLJM4_RS06590	COG3527	Alpha-acetolactate decarboxylase
LLJM4_RS06595	COG0251	oxidation-reduction process
LLJM4_RS06600	COG0758	DNA mediated transformation
LLJM4_RS06605	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LLJM4_RS06650	COG0640	Transcriptional regulator
LLJM4_RS06685	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LLJM4_RS06690	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
LLJM4_RS06695	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LLJM4_RS06700	COG1696	Membrane protein involved in D-alanine export
LLJM4_RS06705	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LLJM4_RS06745	COG2217	Heavy metal translocating P-type atpase
LLJM4_RS06775	COG2814	Major facilitator Superfamily
LLJM4_RS06780	COG1846	Transcriptional regulator
LLJM4_RS06785	COG0222	ribosome binding
LLJM4_RS06790	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LLJM4_RS06805	COG3620	sequence-specific DNA binding
LLJM4_RS06810	COG1132	(ABC) transporter
LLJM4_RS06815	COG1132	(ABC) transporter
LLJM4_RS06840	COG1187	pseudouridine synthase activity
LLJM4_RS06845	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LLJM4_RS06855	COG4974	Belongs to the 'phage' integrase family
LLJM4_RS06870	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LLJM4_RS06880	COG3763	UPF0154 protein
LLJM4_RS06890	COG0493	'glutamate synthase
LLJM4_RS06895	COG0067	glutamate synthase
LLJM4_RS06895	COG0069	glutamate synthase activity
LLJM4_RS06895	COG0070	glutamate synthase
LLJM4_RS06900	COG0110	maltose O-acetyltransferase activity
LLJM4_RS06905	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LLJM4_RS06910	COG0668	transmembrane transport
LLJM4_RS06920	COG0531	amino acid
LLJM4_RS06970	COG1349	DNA-binding transcription factor activity
LLJM4_RS06995	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LLJM4_RS07000	COG0395	ABC-type sugar transport system, permease component
LLJM4_RS07025	COG0803	Belongs to the bacterial solute-binding protein 9 family
LLJM4_RS07050	COG0419	ATPase involved in DNA repair
LLJM4_RS07055	COG0420	3'-5' exonuclease activity
LLJM4_RS07060	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LLJM4_RS07065	COG1393	Belongs to the ArsC family
LLJM4_RS07090	COG1293	RNA-binding protein homologous to eukaryotic snRNP
LLJM4_RS07095	COG2226	methyltransferase
LLJM4_RS07100	COG3845	ABC transporter
LLJM4_RS07105	COG4603	Belongs to the binding-protein-dependent transport system permease family
LLJM4_RS07110	COG1079	Belongs to the binding-protein-dependent transport system permease family
LLJM4_RS07120	COG0469	pyruvate kinase activity
LLJM4_RS07125	COG0205	6-phosphofructokinase activity
LLJM4_RS07140	COG3853	Toxic anion resistance protein (TelA)
LLJM4_RS07150	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LLJM4_RS07170	COG0142	geranyltranstransferase activity
LLJM4_RS07190	COG0167	dihydroorotate dehydrogenase activity
LLJM4_RS07200	COG2814	Major facilitator Superfamily
LLJM4_RS07205	COG2188	Transcriptional regulator
LLJM4_RS07245	COG1175	transmembrane transport
LLJM4_RS07280	COG1187	pseudouridine synthase activity
LLJM4_RS07285	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LLJM4_RS07330	COG0386	Belongs to the glutathione peroxidase family
LLJM4_RS07340	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LLJM4_RS07380	COG1194	a g-specific adenine glycosylase
LLJM4_RS07385	COG0322	excinuclease ABC activity
LLJM4_RS07390	COG3201	nicotinamide mononucleotide transporter
LLJM4_RS07400	COG5002	protein histidine kinase activity
LLJM4_RS07405	COG0745	RESPONSE REGULATOR receiver
LLJM4_RS07415	COG0539	negative regulation of cytoplasmic translation
LLJM4_RS07435	COG2217	Heavy metal translocating P-type atpase
LLJM4_RS07440	COG2608	mercury ion transmembrane transporter activity
LLJM4_RS07445	COG3682	Transcriptional regulator
LLJM4_RS07450	COG1760	l-serine dehydratase
LLJM4_RS07455	COG1760	l-serine dehydratase
LLJM4_RS07460	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LLJM4_RS07490	COG2723	6-phospho-beta-galactosidase activity
LLJM4_RS07495	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LLJM4_RS07515	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LLJM4_RS07520	COG0552	protein localization to endoplasmic reticulum
LLJM4_RS07530	COG0561	phosphatase activity
LLJM4_RS07535	COG1113	amino acid transport
LLJM4_RS07555	COG1368	sulfuric ester hydrolase activity
LLJM4_RS07560	COG1196	nuclear chromosome segregation
LLJM4_RS07575	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LLJM4_RS07585	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LLJM4_RS07590	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LLJM4_RS07595	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LLJM4_RS07650	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LLJM4_RS07660	COG4221	oxidoreductase activity
LLJM4_RS07670	COG1846	Transcriptional regulator
LLJM4_RS07700	COG2723	6-phospho-beta-galactosidase activity
LLJM4_RS07705	COG0698	ribose 5-phosphate isomerase
LLJM4_RS07710	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LLJM4_RS07715	COG1609	Transcriptional regulator
LLJM4_RS07720	COG1063	alcohol dehydrogenase
LLJM4_RS07735	COG0167	dihydroorotate dehydrogenase activity
LLJM4_RS07740	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LLJM4_RS07745	COG0673	inositol 2-dehydrogenase activity
LLJM4_RS07755	COG0488	(ABC) transporter
LLJM4_RS07765	COG0371	Dehydrogenase
LLJM4_RS07775	COG4690	dipeptidase activity
LLJM4_RS07780	COG0617	tRNA 3'-terminal CCA addition
LLJM4_RS07790	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
LLJM4_RS07795	COG1307	EDD domain protein, DegV family
LLJM4_RS07805	COG0336	Belongs to the RNA methyltransferase TrmD family
LLJM4_RS07825	COG1837	Belongs to the UPF0109 family
LLJM4_RS07830	COG0228	four-way junction DNA binding
LLJM4_RS07840	COG0183	Belongs to the thiolase family
LLJM4_RS07845	COG3425	synthase
LLJM4_RS07850	COG0363	glucosamine-6-phosphate deaminase activity
LLJM4_RS07860	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LLJM4_RS07875	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LLJM4_RS07885	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LLJM4_RS07890	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LLJM4_RS07895	COG0347	Belongs to the P(II) protein family
LLJM4_RS07900	COG0004	ammonium transporteR
LLJM4_RS07905	COG5002	protein histidine kinase activity
LLJM4_RS07910	COG0745	RESPONSE REGULATOR receiver
LLJM4_RS07920	COG0254	rRNA binding
LLJM4_RS07935	COG1408	metallophosphoesterase
LLJM4_RS07940	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LLJM4_RS07990	COG0505	Belongs to the CarA family
LLJM4_RS08020	COG1230	cation diffusion facilitator family transporter
LLJM4_RS08025	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LLJM4_RS08065	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LLJM4_RS08080	COG1285	pathogenesis
LLJM4_RS08095	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LLJM4_RS08125	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LLJM4_RS08130	COG0800	Aldolase
LLJM4_RS08155	COG1312	Catalyzes the dehydration of D-mannonate
LLJM4_RS08165	COG1802	Transcriptional regulator
LLJM4_RS08170	COG0477	Major facilitator Superfamily
LLJM4_RS08205	COG1388	LysM domain
LLJM4_RS08205	COG3942	CHAP domain
LLJM4_RS08250	COG0629	single-stranded DNA binding
LLJM4_RS08255	COG4712	double-strand break repair protein
LLJM4_RS08285	COG3561	AntA/AntB antirepressor
LLJM4_RS08300	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LLJM4_RS08305	COG0582	viral genome integration into host DNA
LLJM4_RS08310	COG1879	ABC-type sugar transport system periplasmic component
LLJM4_RS08325	COG1869	D-ribose catabolic process
LLJM4_RS08335	COG1609	Transcriptional regulator
LLJM4_RS08340	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LLJM4_RS08360	COG3118	belongs to the thioredoxin family
LLJM4_RS08370	COG1286	toxin biosynthetic process
LLJM4_RS08380	COG1609	Transcriptional regulator
LLJM4_RS08385	COG0006	proline dipeptidase activity
LLJM4_RS08395	COG0116	Belongs to the methyltransferase superfamily
LLJM4_RS08405	COG3599	regulation of cell shape
LLJM4_RS08410	COG1466	dna polymerase III delta subunit
LLJM4_RS08420	COG1674	ftsk spoiiie
LLJM4_RS08425	COG0561	phosphatase activity
LLJM4_RS08435	COG0280	phosphate acetyltransferase
LLJM4_RS08440	COG0572	uridine kinase
LLJM4_RS08445	COG0673	inositol 2-dehydrogenase activity
LLJM4_RS08455	COG0741	lytic transglycosylase activity
LLJM4_RS08505	COG2723	6-phospho-beta-galactosidase activity
LLJM4_RS08515	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LLJM4_RS08520	COG5002	protein histidine kinase activity
LLJM4_RS08525	COG0745	RESPONSE REGULATOR receiver
LLJM4_RS08530	COG1609	Transcriptional regulator
LLJM4_RS08575	COG3715	PTS system
LLJM4_RS08580	COG3716	PTS system mannose fructose sorbose family IID component
LLJM4_RS08600	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LLJM4_RS08630	COG0704	Plays a role in the regulation of phosphate uptake
LLJM4_RS08635	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LLJM4_RS08640	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LLJM4_RS08645	COG0581	inorganic phosphate transmembrane transporter activity
LLJM4_RS08650	COG0573	inorganic phosphate transmembrane transporter activity
LLJM4_RS08665	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LLJM4_RS08690	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LLJM4_RS08695	COG4122	O-methyltransferase activity
LLJM4_RS08720	COG2252	PERMEase
LLJM4_RS08725	COG0561	phosphatase activity
LLJM4_RS08730	COG0247	lactate metabolic process
LLJM4_RS08735	COG1139	Iron-sulfur cluster binding protein
LLJM4_RS08740	COG1556	Lactate utilization protein
LLJM4_RS08745	COG0670	Belongs to the BI1 family
LLJM4_RS08750	COG1597	lipid kinase activity
LLJM4_RS08760	COG0268	Binds directly to 16S ribosomal RNA
LLJM4_RS08765	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LLJM4_RS08770	COG0406	alpha-ribazole phosphatase activity
LLJM4_RS08775	COG0077	Prephenate dehydratase
LLJM4_RS08790	COG0287	Prephenate dehydrogenase
LLJM4_RS08800	COG0745	RESPONSE REGULATOR receiver
LLJM4_RS08810	COG0577	efflux transmembrane transporter activity
LLJM4_RS08815	COG1136	(ABC) transporter
LLJM4_RS08835	COG4493	Belongs to the UPF0637 family
LLJM4_RS08860	COG0765	amino acid transport
LLJM4_RS08865	COG1126	abc transporter atp-binding protein
LLJM4_RS08905	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LLJM4_RS08915	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LLJM4_RS08925	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LLJM4_RS08930	COG0356	it plays a direct role in the translocation of protons across the membrane
LLJM4_RS08970	COG4152	abc transporter atp-binding protein
LLJM4_RS08990	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LLJM4_RS09005	COG1268	BioY protein
LLJM4_RS09030	COG4842	Belongs to the WXG100 family
LLJM4_RS09035	COG0719	Fe-S assembly protein
LLJM4_RS09050	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LLJM4_RS09055	COG0719	Fe-S assembly protein
LLJM4_RS09065	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LLJM4_RS09070	COG4862	establishment of competence for transformation
LLJM4_RS09075	COG1126	abc transporter atp-binding protein
LLJM4_RS09080	COG0765	amino acid transport
LLJM4_RS09085	COG0085	RNA polymerase activity
LLJM4_RS09105	COG1396	sequence-specific DNA binding
LLJM4_RS09120	COG2244	polysaccharide biosynthetic process
LLJM4_RS09135	COG1064	alcohol dehydrogenase
LLJM4_RS09140	COG0514	ATP-dependent DNA helicase (RecQ)
LLJM4_RS09165	COG2195	Cleaves the N-terminal amino acid of tripeptides
LLJM4_RS09175	COG1227	inorganic diphosphatase activity
LLJM4_RS09180	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LLJM4_RS09185	COG1253	flavin adenine dinucleotide binding
LLJM4_RS09190	COG0628	permease
LLJM4_RS09230	COG1573	uracil-dna glycosylase
LLJM4_RS09235	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LLJM4_RS09245	COG2827	Endonuclease containing a URI domain
LLJM4_RS09250	COG1113	amino acid transport
LLJM4_RS09260	COG1564	THIamine pyrophosphokinase
LLJM4_RS09290	COG0436	Aminotransferase
LLJM4_RS09300	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LLJM4_RS09300	COG1199	ATP-dependent helicase activity
LLJM4_RS09315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LLJM4_RS09320	COG0601	transmembrane transport
LLJM4_RS09335	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LLJM4_RS09340	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LLJM4_RS09345	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LLJM4_RS09380	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
LLJM4_RS09395	COG1045	serine acetyltransferase
LLJM4_RS09415	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LLJM4_RS09420	COG0589	response to stress
LLJM4_RS09425	COG1104	cysteine desulfurase activity
LLJM4_RS09435	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LLJM4_RS09450	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LLJM4_RS09455	COG3599	regulation of cell shape
LLJM4_RS09460	COG2302	S4 RNA-binding domain
LLJM4_RS09475	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LLJM4_RS09480	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LLJM4_RS09485	COG0849	cell division
LLJM4_RS09490	COG1307	EDD domain protein, DegV family
LLJM4_RS09505	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LLJM4_RS09510	COG0656	L-ascorbic acid biosynthetic process
LLJM4_RS09545	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LLJM4_RS09555	COG0494	nUDIX hydrolase
LLJM4_RS09565	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LLJM4_RS09570	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LLJM4_RS09575	COG0515	serine threonine protein kinase
LLJM4_RS09575	COG2815	serine threonine protein kinase
LLJM4_RS09580	COG0631	protein serine/threonine phosphatase activity
LLJM4_RS09585	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LLJM4_RS09585	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LLJM4_RS09595	COG0463	Glycosyl transferase, family 2
LLJM4_RS09625	COG2746	aminoglycoside 3-N-acetyltransferase activity
LLJM4_RS09675	COG1192	Involved in chromosome partitioning
LLJM4_RS09690	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LLJM4_RS09750	COG1266	CAAX protease self-immunity
LLJM4_RS09780	COG3328	transposase activity
LLJM4_RS09835	COG3942	CHAP domain
LLJM4_RS09835	COG1705	Flagellar rod assembly protein muramidase FlgJ
LLJM4_RS09910	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LLJM4_RS10110	COG2261	transglycosylase associated protein
LLJM4_RS10140	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LLJM4_RS10150	COG0194	GDP metabolic process
LLJM4_RS10160	COG0363	glucosamine-6-phosphate deaminase activity
LLJM4_RS10170	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LLJM4_RS10175	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
LLJM4_RS10175	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
LLJM4_RS10180	COG1983	PspC domain protein
LLJM4_RS10195	COG3942	CHAP domain
LLJM4_RS10195	COG1705	Flagellar rod assembly protein muramidase FlgJ
LLJM4_RS10200	COG0191	fructose-bisphosphate aldolase activity
LLJM4_RS10260	COG2860	membrane
LLJM4_RS10285	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LLJM4_RS10300	COG0626	cystathionine gamma-synthase activity
LLJM4_RS10305	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
LLJM4_RS10325	COG3481	metal-dependent phosphohydrolase, HD sub domain
LLJM4_RS10350	COG1162	GTPase activity
LLJM4_RS10355	COG1388	LysM domain
LLJM4_RS10355	COG3584	3D domain protein
LLJM4_RS10360	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LLJM4_RS10360	COG0072	phenylalanine-tRNA ligase activity
LLJM4_RS10370	COG3479	Phenolic acid decarboxylase
LLJM4_RS10385	COG3469	chitinase activity
LLJM4_RS10450	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LLJM4_RS10460	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LLJM4_RS10465	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LLJM4_RS10470	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LLJM4_RS10480	COG0537	adenosine 5'-monophosphoramidase activity
LLJM4_RS10510	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LLJM4_RS10515	COG1426	Protein conserved in bacteria
LLJM4_RS10520	COG0612	Peptidase, M16
LLJM4_RS10525	COG0612	Peptidase, M16
LLJM4_RS10530	COG2501	S4 domain
LLJM4_RS10540	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LLJM4_RS10555	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LLJM4_RS10565	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LLJM4_RS10585	COG0667	Aldo Keto reductase
LLJM4_RS10600	COG0826	peptidase U32
LLJM4_RS10615	COG0500	methyltransferase
LLJM4_RS10730	COG0732	type I restriction modification DNA specificity domain
LLJM4_RS10735	COG4974	Belongs to the 'phage' integrase family
LLJM4_RS10750	COG1131	(ABC) transporter
LLJM4_RS10760	COG0537	adenosine 5'-monophosphoramidase activity
LLJM4_RS10775	COG0081	regulation of translation
LLJM4_RS10780	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LLJM4_RS10790	COG1131	(ABC) transporter
LLJM4_RS10800	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LLJM4_RS10805	COG2996	Protein conserved in bacteria
LLJM4_RS10830	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LLJM4_RS10835	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LLJM4_RS10840	COG0827	DNA restriction-modification system
LLJM4_RS10850	COG1217	gtp-binding protein TYPA
LLJM4_RS10860	COG2801	Transposase and inactivated derivatives
LLJM4_RS10900	COG1940	carbohydrate kinase activity
LLJM4_RS10910	COG0783	Belongs to the Dps family
LLJM4_RS10930	COG0531	amino acid
LLJM4_RS10935	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LLJM4_RS10955	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LLJM4_RS10975	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LLJM4_RS10985	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LLJM4_RS11015	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LLJM4_RS11050	COG1266	CAAX protease self-immunity
LLJM4_RS11065	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
LLJM4_RS11070	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LLJM4_RS11075	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LLJM4_RS11090	COG1335	isochorismatase
LLJM4_RS11130	COG4956	integral membrane protein (PIN domain superfamily)
LLJM4_RS11150	COG1216	Glycosyl transferase, family 2
LLJM4_RS11150	COG1442	glycosyl transferase family 8
LLJM4_RS11155	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LLJM4_RS11160	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LLJM4_RS11185	COG1216	Glycosyl transferase, family 2
LLJM4_RS11200	COG0203	ribosomal protein L17
LLJM4_RS11205	COG0202	RNA polymerase activity
LLJM4_RS11210	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LLJM4_RS11215	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LLJM4_RS11220	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LLJM4_RS11225	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LLJM4_RS11230	COG0563	adenylate kinase activity
LLJM4_RS11240	COG0200	Binds to the 23S rRNA
LLJM4_RS11245	COG1841	ribosomal large subunit assembly
LLJM4_RS11250	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LLJM4_RS11255	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LLJM4_RS11265	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LLJM4_RS11275	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LLJM4_RS11280	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LLJM4_RS11285	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LLJM4_RS11290	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LLJM4_RS11295	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LLJM4_RS11300	COG0255	Belongs to the universal ribosomal protein uL29 family
LLJM4_RS11305	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LLJM4_RS11310	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LLJM4_RS11315	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LLJM4_RS11320	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LLJM4_RS11325	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LLJM4_RS11340	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LLJM4_RS11345	COG0051	transcription antitermination factor activity, RNA binding
LLJM4_RS11350	COG1970	mechanosensitive ion channel activity
LLJM4_RS11360	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LLJM4_RS11365	COG0250	Participates in transcription elongation, termination and antitermination
LLJM4_RS11375	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LLJM4_RS11380	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
LLJM4_RS11380	COG2755	lipolytic protein G-D-S-L family
LLJM4_RS11385	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LLJM4_RS11390	COG2323	membrane
LLJM4_RS11405	COG0564	pseudouridine synthase activity
LLJM4_RS11415	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LLJM4_RS11420	COG1121	(ABC) transporter
LLJM4_RS11425	COG3443	Belongs to the bacterial solute-binding protein 9 family
LLJM4_RS11425	COG0803	Belongs to the bacterial solute-binding protein 9 family
LLJM4_RS11430	COG1846	Transcriptional regulator
LLJM4_RS11450	COG4537	Required for transformation and DNA binding
LLJM4_RS11455	COG1459	type II secretion system
LLJM4_RS11460	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LLJM4_RS11465	COG2176	DNA-directed DNA polymerase activity
LLJM4_RS11475	COG0446	pyridine nucleotide-disulphide oxidoreductase
LLJM4_RS11480	COG0442	prolyl-tRNA aminoacylation
LLJM4_RS11485	COG0750	zinc metalloprotease
LLJM4_RS11490	COG4589	Belongs to the CDS family
LLJM4_RS11495	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LLJM4_RS11500	COG1862	Preprotein translocase
LLJM4_RS11515	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LLJM4_RS11525	COG0438	transferase activity, transferring glycosyl groups
LLJM4_RS11540	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LLJM4_RS11545	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LLJM4_RS11545	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LLJM4_RS11555	COG1609	Transcriptional regulator
LLJM4_RS11590	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LLJM4_RS11595	COG0052	Belongs to the universal ribosomal protein uS2 family
LLJM4_RS11600	COG2706	6-phosphogluconolactonase activity
LLJM4_RS11605	COG1012	belongs to the aldehyde dehydrogenase family
LLJM4_RS11605	COG1454	alcohol dehydrogenase
LLJM4_RS11630	COG0535	radical SAM domain protein
LLJM4_RS11640	COG3480	Lon protease (S16) C-terminal proteolytic domain
LLJM4_RS11650	COG0742	ribosomal rna small subunit methyltransferase
LLJM4_RS11655	COG2814	Major facilitator Superfamily
LLJM4_RS11695	COG0702	epimerase
LLJM4_RS11700	COG1733	regulation of RNA biosynthetic process
LLJM4_RS11710	COG0525	valine-tRNA ligase activity
LLJM4_RS11745	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LLJM4_RS11790	COG1070	Carbohydrate kinase
LLJM4_RS11795	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
LLJM4_RS11810	COG1408	metallophosphoesterase
LLJM4_RS11815	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LLJM4_RS11820	COG0629	single-stranded DNA binding
LLJM4_RS11825	COG0360	Binds together with S18 to 16S ribosomal RNA
LLJM4_RS11835	COG0833	amino acid
LLJM4_RS11840	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LLJM4_RS11850	COG1956	GAF domain-containing protein
LLJM4_RS11855	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
LLJM4_RS11855	COG1605	Chorismate mutase
LLJM4_RS11870	COG0174	glutamine synthetase
LLJM4_RS11875	COG0789	Transcriptional regulator
LLJM4_RS11880	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LLJM4_RS11885	COG2255	four-way junction helicase activity
LLJM4_RS11935	COG0730	response to heat
LLJM4_RS11945	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LLJM4_RS11950	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
LLJM4_RS11965	COG1794	racemase activity, acting on amino acids and derivatives
LLJM4_RS11975	COG0367	asparagine synthase
LLJM4_RS11980	COG3883	PFAM NLP P60 protein
LLJM4_RS11980	COG3942	CHAP domain
LLJM4_RS11995	COG0494	nUDIX hydrolase
LLJM4_RS12005	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LLJM4_RS12010	COG2814	Major facilitator Superfamily
LLJM4_RS12015	COG0589	response to stress
LLJM4_RS12030	COG1309	transcriptional regulator
LLJM4_RS12035	COG1187	pseudouridine synthase activity
LLJM4_RS12070	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LLJM4_RS12075	COG2824	Alkylphosphonate utilization operon protein PhnA
LLJM4_RS12105	COG1266	CAAX protease self-immunity
LLJM4_RS12165	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LLJM4_RS12170	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LLJM4_RS12180	COG1136	(ABC) transporter
LLJM4_RS12190	COG0681	Belongs to the peptidase S26 family
LLJM4_RS12195	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LLJM4_RS12220	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LLJM4_RS12225	COG0049	tRNA binding
LLJM4_RS12230	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LLJM4_RS12245	COG1686	Belongs to the peptidase S11 family
LLJM4_RS12250	COG4975	Glucose uptake
LLJM4_RS12255	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
LLJM4_RS12260	COG1242	4 iron, 4 sulfur cluster binding
LLJM4_RS12310	COG1192	Involved in chromosome partitioning
LLJM4_RS12325	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LLJM4_RS12375	COG1278	Cold shock
LLJM4_RS12445	COG1335	isochorismatase
LLJM4_RS12450	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LLJM4_RS12520	COG0454	-acetyltransferase
LLJM4_RS12545	COG1266	CAAX protease self-immunity
LLJM4_RS12560	COG0569	domain protein
LLJM4_RS12565	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LLJM4_RS12590	COG2223	nitrite transmembrane transporter activity
LLJM4_RS12795	COG1914	H( )-stimulated, divalent metal cation uptake system
LLJM4_RS12930	COG1966	Carbon starvation protein
LLJM4_RS12945	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LLJM4_RS12965	COG0601	transmembrane transport
LLJM4_RS12970	COG4608	Belongs to the ABC transporter superfamily
LLJM4_RS13290	COG1266	CAAX protease self-immunity
LLJM4_RS13360	COG2020	methyltransferase activity