JJN11_RS23855 NONE
        dnaN NONE
        recF NONE
JJN11_RS23485 NONE
JJN11_RS23490 NONE
        arsC NONE
        gyrB    6174 ..    6200 + -14.5  -4.90778   CTACAGGTTTCGTAG        GCCCGGT-ACGC GTCA GCGTCACCGGGC         TTTTCTTTAGATGCA 100 77
JJN11_RS23510 NONE
JJN11_RS23515 NONE
        yidA    7134 ..    7165 +  -9.5   -2.7169   GCTGAATTAAGACCT      GTCAGGCAAGTACG CTCGA CGTACTTGCC-GCC      TGCTCTCATCTTTCC  66 31
JJN11_RS23530 NONE
JJN11_RS00030    8879 ..    8918 +   -10  -3.31461   GTTAGTCATCATCAA  TGGCACGGCATAAACCTG CTAC CGGGTTTATAACGGGCCA   TTCTCAAAATGAATA  73 376
        ibpA    9702 ..    9714 +  -3.4  -3.85092   TGTACCGAACTCGCT                TCTC AGAAG GAGA                TTTAGTATGCGTAAT  55 144
        ibpB   10235 ..   10252 + -14.1  -5.24531   CCGGGCAAAATCAAA             GCCCCGC CCCG GCGGGGC              TTTTTTGTGCGCCAT 100 111
JJN11_RS00050   12275 ..   12296 +  -5.9  -2.72991   GGTAAAGCGGGTATT           CATCTTGAT GGGC ATCAGGGTG            TAGTTGGCGATGTCA  51 301
JJN11_RS00075 NONE
JJN11_RS00080 NONE
JJN11_RS00085 NONE
JJN11_RS00090   20530 ..   20546 +  -5.1  -3.28712   TTATCAGGGGTATTA              CATGACA GGA TGTCAGG              TTATGGCCAAGCCAG  54 21
JJN11_RS00095   21824 ..   21838 +  -8.6  -2.78384   GCGCCAGCCAGCCCA               GCATGT CAT ACATGC               TCTGATCGGAGAGGG  58 215
JJN11_RS23585   24333 ..   24353 +  -7.6  -2.69998   GATTTTTAAACGACA           GC-GGCAAC GAAT GTTGCCAGC            GTTAATTCATTTGCT  58 57
        ivbL NONE
        chrA NONE
JJN11_RS23595 NONE
JJN11_RS23605 NONE
        ilvB NONE
        ilvN   27866 ..   27880 +   -10  -3.67976   CAGGATCTTGCGGAT               GCCATG TTG CATGGC               TTTGCGCTTGGTGGC  75 204
        arsC NONE
        rbsK NONE
JJN11_RS23625 NONE
        fucP NONE
JJN11_RS00150 NONE
JJN11_RS23635   32124 ..   32148 + -12.2  -5.14563   TCGCTTGAACAGTAA          CGCGCTTATC GCTAA GGTAAGCGCG          TTTTTTAATCCCGCC 100 9
JJN11_RS23640 NONE
        uhpA NONE
        uhpB NONE
JJN11_RS00165   35574 ..   35592 +  -5.2  -3.04517   CCGCGTGAAGCCAGT             GTGATGTG ATG CGCCTCAC             CTTTTCACCGCGAGT  51 17
        uhpT   37133 ..   37151 + -13.8   -5.1925   TGCAGGTCACTTTTT             GCCCGGCG TGA TGCCGGGC             TTTTTTACATTCTCA 100 44
JJN11_RS23670 NONE
JJN11_RS23675 NONE
JJN11_RS00175   38389 ..   38410 +  -2.9  -4.09864   GGAAACGGGTGTCTC           GCAGACGAA CATC TCCGTCTGA            TTTTCGGCGATGCGT  58 133
JJN11_RS00185   39737 ..   39761 +  -6.5  -3.32997   TGATATCACGCCTCG          TGATGAGGATT ATA AATCATCGTCA          TTAGATTTATACCAC  59 38
JJN11_RS00190   40374 ..   40390 +    -3  -2.74094   CTTTTGATGATAAAC             TGCGCGA CTTT TC-CGCA              CGTTTTTATCTCAGG  41 51
        nepI   41631 ..   41660 +  -4.9  -3.80733   CTCCCCGCCGGGAGA       GGGCATCAGGCTAC GAC GATGTCTGA-GCCC       TTCTTCTCGAATCCA  59 53
JJN11_RS23715   45839 ..   45849 +  -4.6  -3.68265   GGTTAATCCTTTGCC                 GCCG CCC TGGC                 TTTCCCCTTCGGTTT  57 93
JJN11_RS23720   47187 ..   47197 +  -6.8  -3.05384   CAATCACGTACTTCT                 GCTG GCC CAGC                 TTGCCTGCCAGCGGC  55 415
JJN11_RS00230   48841 ..   48856 +  -8.2  -3.93695   CGCTAAAAAATTAAG              GGGGCT GCAT GGCCCC               TTTATGCGTAATCAG  73 35
JJN11_RS00240   50375 ..   50391 +  -9.3  -3.92542   TAGTAGTGCAGCATC              GCTGGCG TCA CGCCCGC              TTCTTTGGCAATGGC  76 494
JJN11_RS00250   52144 ..   52157 +  -2.4  -4.16842   CGGGAGGCGTAAAGT               TAGC GGGTCA GCTA                TTTGTTGCGAGTCGC  59 29
JJN11_RS00255   52500 ..   52512 +  -6.3  -3.30441   CTATACGACAAGAGA                TCCTT TTG AAGGA                TTATAGAAAATGCTG  59 7
JJN11_RS00260 NONE
        nlpA   53920 ..   53948 + -13.2  -2.52676   CGGGCTGGGAATAAA        TCATCATGCCGC TCACT GCGGCATGAAGA        TAAGTTGGCCCAATC  84 27
JJN11_RS00270 NONE
JJN11_RS00275   55991 ..   56016 +  -7.5  -4.21768   TCAGGCTAGCCAGAG         CAGGCAGCATC TGCG GATGCAGGCTG          TTTTCCGGTTCGTTG  73 203
        silR NONE
        silS   58879 ..   58889 +  -2.4  -4.31433   CTGAGCAGAAGGTTG                 TCGC CCG GCGC                 TTTCTTATCGCCCTC  62 69
        silE NONE
JJN11_RS00300 NONE
JJN11_RS23775   60369 ..   60381 +  -4.8  -3.36983   GGCTTTCAGGGGAAC                GCGA AGCGA TCGC                TTCATTCAAGGTTTT  51 379
JJN11_RS00315   61325 ..   61352 +  -4.7  -3.72695   CCCCTTCGCCCCTAT        GGGGGGAGGGG AAATAA CCCCTTAACCC         TTTCCTGAAGCCGAT  57 56
JJN11_RS00330 NONE
JJN11_RS23785   63194 ..   63209 +  -3.3   -4.4009   CAATTAGTTATGATA              TCCTT ATGCCC AAGGA               TTTTCTCCGCTAGAA  64 299
JJN11_RS23790 NONE
JJN11_RS00350 NONE
        yicI   69111 ..   69163 +    -9  -2.70391   GCCACCCGGCAATGC AGCGCGCTCTG-ATGCCCGGCG-GCG CTG CGCTTGCCGGGCCTACGGGTCGTGCA TGCTGTGGGTTTTGT  63 129
JJN11_RS23805   69892 ..   69923 +  -2.8  -3.16564   CGGTGCCTGACCAGA      CCCCCCACTCGCGA TCTT TCGCCAGTTGCAGG       TTGGTGCCATAGCCG  45 60
JJN11_RS23810   70571 ..   70586 +    -9   -3.4149   CATATCCGCGCCGAT              GGTGGT CAGC ACCACC               TCTTTACCGTTCAGT  69 111
JJN11_RS23815   70948 ..   70967 +  -2.8  -4.56597   GGGTCGCAGGTTGAC            CGTCGC GCCCGAAG GTGACG             TTTTTCAGCACCAGG  69 15
JJN11_RS23820   72068 ..   72082 +  -2.7  -4.65895   ATTGCCAGCACAATG               CCCGC CAGCA GCAGG               TTTTTAGGTGCGCCG  66 359
        gltS   74465 ..   74479 +  -5.6  -4.21908   TGCAGCTGCGCCAGA               CCCAGA CGT TCCGGG               TTTTCGATGATCATC  66 387
        ligB NONE
         rph   86492 ..   86509 + -11.3  -5.83822   AAAATTGATTTTAAA             GGCGACT GATG AGTCGCC              TTTTTTTTGCCTGTA 100 33
        pyrE   87593 ..   87614 +  -4.3  -4.81083   TCAGCAGGACAATCA           GACGCAGCC GTGC GGTGGTGTC            TTTTTCATCCTTCAG  75 425
        radC   90477 ..   90490 +  -6.7   -4.2074   TAAGCCATTTCTCGC               GATCC ATCG GGATC                TTTGTCTGTTCGGGA  71 38
        rpmB NONE
        rpmG   91134 ..   91149 + -11.8   -5.1925   CCTTGTATTGAAAAA              CCCCGC ATCT GCGGGG               TTTTTTGCATTCTGC 100 50
        mutM   92083 ..   92110 +  -3.3  -3.34398   GGCGGGTAAGAAATG        GGTGACGTCACC TGCGT GGCG-CGCCACC        TCTTTCACCAGCGAA  47 117
JJN11_RS00500  101528 ..  101551 +    -3  -4.24002   AAACGCACCCGGGAA          GC-GACGCCGA GCG TCTGCGCCAGC          TTTTCGAATTTGCGG  60 368
         kbl NONE
         tdh  108790 ..  108803 +  -9.5  -5.48825   GGATTAAGTTAGAAA               GCGCC TGCG GGCGC                TTTTTTTCGCTGGTC 100 34
JJN11_RS00540  109725 ..  109750 +  -9.7  -4.63218   CGTGTCATTGAGTAG         GC-CATCCCGCC TGA GGCGGGATTAGC         TTTTCTTACCCCAGC  91 26
JJN11_RS00560 NONE
        grxC NONE
        secB  114964 ..  114984 +  -3.9  -2.64933   GCGAAGGTACTGAAC            AACATCAGG ATG CCTGATGAG            TACTGTCAATGCGTC  44 9
        gpsA  116025 ..  116054 +  -7.9  -3.98378   GCGTTGTCCCCTGAA       TGACCCGGCCGG CAAAGAA CTGGCCGG-TCA       TTATTATTACGTCTG  73 51
        cysE  117191 ..  117201 +  -2.4  -4.11692   TCGTCAGGGCAAAGA                 TCCG CTC CGGC                 TTTTCCGCGTCCATA  59 316
JJN11_RS00625 NONE
JJN11_RS00630  127721 ..  127748 + -12.8  -5.65927   ATTAATCCTCTGAAA        GGCAGGC-ATGCG CGA TGCATCGCCTGCC        TTTTTTCTTTGCCTG 100 36
JJN11_RS00635 NONE
        selA NONE
        selB  131841 ..  131879 +  -4.7  -2.87463   GCAGGGCAGGATGGG  CACCTGCAGCGCCT CCCACTCTTCAA AGGT-CTGCAGGTG   TCTGTCGAGCAGCTT  46 112
        aldB  134351 ..  134378 +   -17  -3.00298   TGTTCTGACCCTTCA        GCGCAGGTCGCC GCTG GGTGGCCTGCGC         TATCTGCTTACGCAG  88 33
JJN11_RS00665  136174 ..  136197 + -12.5  -3.95836   TTAATGTAGTAAAAA          TCAGCCCTC TGAGAT GAGGGCTGA           TTCTGTTTTCCGGCT  91 37
JJN11_RS00685  141594 ..  141612 +  -8.1  -3.24747   CACCTCGTTGGACAG             GCGCAGC AGATC GTTGCGC             TTAATCATCTCGCAC  59 387
JJN11_RS00700  145849 ..  145868 + -13.6  -5.76237   GTAGTCTTAAAAAAA            GGCCTTCC ATCC GGAAGGCC             TTTTTTATTTATATC 100 37
        xylA  152606 ..  152632 +  -9.5  -3.11024   TTACGGTTAGCCCAG        GCCCGGAACCGCT GCA AGCG-T-CCGGGC        ATTTCTGTTAAAGGA  70 76
        xylB  154164 ..  154191 +  -3.8  -4.24562   TCCATCTCTATATTT        TAAATAATTGATT CTA AAT-AATTATTTA        TTTGTATGGTTTTTT  62 78
JJN11_RS00735  154741 ..  154754 +  -9.5  -3.51232   AGATCGCCTGATACA               GCGCC CGGT GGCGC                TTCGTTTGCACAGCC  74 30
JJN11_RS00745  156315 ..  156343 +  -4.4  -3.06509   ATAGTCGCTTAATGT        GGTGGCTGCGTC AGCAG GGCGCTGTCAGC        TATGCTTATTTCCCA  47 42
        glyQ NONE
        glyS  159486 ..  159499 +  -9.5    -5.626   ACGCTTGCTAAAAAA               CCCGC TTCG GCGGG                TTTTTTTATGGCGTG 100 63
JJN11_RS00760  161419 ..  161431 +  -3.3  -4.86621   TTCAGCTCGGTCATG                GAGGG CTT CACTC                TTTTTGATTCCCACT  73 137
JJN11_RS00770  162783 ..  162818 + -16.4  -3.49475   CCGGGCGCATTCCAG    AATAAAAAACCCCGCT GCAA AGCGGGGTTTTTTATC     TTCTCTGAAAATAAA 100 126
        cspA  163273 ..  163287 + -12.8  -6.02546   GCAAGAATTTAAAAA               CCCGCC TCT GGCGGG               TTTTTTTTCGTTTAA 100 55
JJN11_RS00810  171785 ..  171797 +  -3.3  -3.05384   GTTGGGTATCTTCCT                GCCAG GCG CTGTC                TTCAATGCGAAAGCC  43 53
JJN11_RS00825  173721 ..  173735 +  -4.2  -4.12188   TTCATTCCACGCCCT               CTGCAT TTC ATGCCG               TTTTACCCCTGGTAA  60 137
JJN11_RS00830  175034 ..  175052 +   -16  -5.69262   TAAAACTACCTCTAA             GGGCCGGA TAT TCCGGCCC             TTTTTGTTTTTATAA 100 42
        eptB  177057 ..  177082 +  -4.7  -3.14344   GTAGCAGTAAGATGC         GCTCCGC-ATTC GGC GAGTAGCGCAGC         TTGGTAGCGCAACTG  50 107
JJN11_RS00840  177153 ..  177171 +   -16   -5.1287   CGACCACATTCGAAA             CCCCGCTC TTT GAGCGGGG             TTTTTTGCATCTGAA 100 35
JJN11_RS00845  177318 ..  177336 +   -16  -5.50313   CGACCACATTCGAAA             CCCCGCTC TTT GAGCGGGG             TTTTTTGCTTTTATG 100 35
JJN11_RS00850  179629 ..  179656 +  -7.6  -2.50077   GGGCCTACAAATGTA        GGCCGGGTAAGCG CAG CGCC-ACCCGGCA        GTAGTTTTGTGAGCA  57 96
        dppB NONE
        dppC NONE
        dppD NONE
        dppF  183661 ..  183676 + -11.8  -6.15536   GTAAGTGAAAAAAAA              CCGGCG AATT CGCCGG               TTTTTTTTATTGGTT 100 37
JJN11_RS00880 NONE
JJN11_RS00885  185220 ..  185231 +  -4.4   -5.7946   GCTCGAACTTAAAAA                GAGA GAAA TCTC                 TTTTTTTGTTACAGA  95 89
JJN11_RS00890 NONE
JJN11_RS00895  185484 ..  185500 +  -5.8   -3.3071   AATGTATTCAACAGT              TCAGGC ATTTC GCCTGG              TTGATGTGGTGATAT  57 79
         tuf  186768 ..  186785 + -11.3  -4.60924   CAATGCGCATGAAAA             GGGCATC ATTT GATGCCC              TTTTTGCACGCTTTC 100 60
        secE NONE
        nusG  187932 ..  187960 + -15.4  -5.35224   TTAAACGTTGCACAG        GGCGCGAGATTG GAATA CAATTTCGCGCC        TTTTGTTTTTATGGA 100 64
        rplK NONE
        rplA  189193 ..  189228 +  -8.2  -3.76402   AAACTAATACCTTTA    CGTGGGCGGCGAATTT GTCT ACAATCTTCGCCCACG     TTTGCTAACTCAGGT  71 34
        rplJ  189960 ..  189982 +  -2.7  -3.92602   GTTCGCGATGCGAAA          GAAG-CTGCT TAAT AGCAGTCCTC           TTTATCAAGTATTCG  54 14
        rplL  190443 ..  190468 + -15.5  -4.64766   AGAAATTAGGCTGAT         GGCTGGTGACT TTTT GGTCACCAGCC          TTTTTGCGCTGTAAG 100 65
        rpoB  194770 ..  194797 + -17.8  -2.65298   CGCTCAAACAGGTCA        CTGGTGTCGGGG TAAC TCCCGACACCAG         ATTGTGCTAACTCCG 100 45
        rpoC  199075 ..  199088 +  -9.5  -6.30182   CAGCCCATTAAAAAA               CCCGC TTCG GCGGG                TTTTTTTTTGTCTGA 100 50
        nudC NONE
        hemE NONE
         nfi NONE
JJN11_RS01005 NONE
        hupA NONE
JJN11_RS01015  211069 ..  211087 +  -7.4  -3.91897   AGATCGGATTTCATG             CGCAGC ATGATTG GCTGCG             TTTCTGGGTCGCCAA  66 457
JJN11_RS01030  215729 ..  215760 +  -9.6  -4.49756   CTGATGAATGATGAA      CTTCTGAATGTACT TTTG AGTGCATTAAGAAG       TTTTGCTCTTTAAAA  91 80
JJN11_RS01035  218811 ..  218825 +  -6.4  -2.64651   CTTAACCTTACAACG               CCGAAG CTG TTTCGG               TGGATTTGAGAGATT  53 32
         rrf  219133 ..  219152 + -13.6  -4.74103   CAATTAAAGCCGAAA            GCCCATCC TCAC GGATGGGC             TTTTTGCGTTGGGCG 100 43
        metA  220307 ..  220322 + -10.4  -5.63517   CAGCTCTCCAGTTAA              GGCACC TTTG GGTGCC               TTTTTTATTTCCGAA 100 71
        aceB  222111 ..  222132 +  -4.3  -2.72511   ACTTCCTGACGCTGC           CGGGCTACC GCCT GCTGGCCTG            ATTTCACCACATAAC  44 3
        aceA  223501 ..  223517 +  -2.1  -3.74693   GTGGCGCTGCGCTTA              CCGGGCC TAC GGTTCTG              TTTCCTGGGGTGAGG  50 56
        aceK  225276 ..  225287 +  -7.2  -3.30124   GGCTTAACGCCGGGT                GGCG GCTG CGCC                 TTATCCGGCCTACAG  62 34
        metH  230106 ..  230136 +   -14  -4.29326   CACGTTTCCTTACAA       CAAACAGGGCACCC AAT GGGTGCCCTGTCTC       TTTCTTACATTTAAG 100 79
JJN11_RS01075  231942 ..  231968 +  -2.9  -3.97088   CGCAGAACGGAGCGG        CGAGGCG-TGAG TAAA CACATCGCCTGG         TTTAATGTTATGCCA  56 55
JJN11_RS01080 NONE
JJN11_RS01085  232742 ..  232761 +    -5   -3.4072   GAAACCTAAGGTATA            TTTCGCCT CTAC AGGAGAAA             TTATGCTGCCAACTC  52 55
        rluF  233955 ..  233970 +    -9  -2.55253   CAGTGTAAAGCATGC              CTTCGC TGCG GCGAAG               TGAATTAACCTTCCT  63 341
JJN11_RS01110 NONE
JJN11_RS01115  238859 ..  238878 + -16.4  -5.64873   GGCAGGATAAAAAAA            GGGCCCGG TTGT CCGGGCCC             TTTTTTGTTATTCAA 100 31
         pgi NONE
        psiE  243196 ..  243213 +  -5.5   -3.5764   GCGACGCGGCCTCTT             CCAGCGA GTTG TCGATGG              TTTCGAAATAGCCTT  55 446
        malK NONE
JJN11_RS01155  249516 ..  249533 + -12.7   -3.1478   TGTATTGACCTAAAA             GAGGGGC GCAA GCCCCTC              TCTTCATAGGGTGCT  84 55
        malM  250599 ..  250618 +   -15  -6.04378   TTTGTCAGTAGTTTG            GTGCGCCC CTAT GGGCGCAC             TTTTTTTTGTGATTT 100 62
        ubiC NONE
        ubiA  252196 ..  252207 +  -7.2  -5.45652   CCCGGTAAGCGTTAG                CGCC ACCG GGCG                 TTTTTTATTCGCCCT  93 97
JJN11_RS01180  255192 ..  255214 +  -3.5  -2.84839   TCTCTGGTTTTTTAT          GCGGTTTGTG GTTC CA-AAATCGC           CTTTAGCTGTATATA  43 61
        lexA  255885 ..  255911 + -12.3  -5.49579   TATAACCTCTTTCTG         ACAGACTGCGG CAACC CCGCAGTCTGC         TTTTCTTTTTTCTCC 100 36
        dinF  257232 ..  257245 +  -3.7  -2.94144   TCTGGCGCCGGCACT               GGCGC AACG GCACC                TGGTTTCAATAACGG  45 0
JJN11_RS01195  257644 ..  257665 + -11.5  -5.67063   CACGGATGTACGCCC           AGGGCGACC TTCA GGTCGCCCC            TTTTTTTGTGCTCAA 100 61
JJN11_RS01205  258902 ..  258927 + -10.4  -3.51232   ACAGAGGACGTATTT         CCCTGCGCGGC GTATA GCCGC-CGGGG         TTAATTTACCCAAAA  77 134
JJN11_RS01210 NONE
        dusA  261374 ..  261397 + -15.3  -5.83822   TCGTCAAATTCACCA          CGCCCGGCA CCGCAT TGCCGGGCG           TTTTTTTTCAATATC 100 55
        pspG  261885 ..  261908 +  -6.6  -5.24129   AAAAGCAAAGCAAGA          AAGGGCTTCC CAAG GGAAGCCCAA           TTTTTTATCAAGGGA  91 182
        dnaB NONE
         alr NONE
        tyrB  267031 ..  267052 +    -8  -2.71731   AGCACTTACTCACGA           CCTCCTTC TTTAGC GAAGGGGG            TCGTTAAGAAGTACA  58 40
        aphA  267964 ..  267974 +  -4.6  -4.37711   TTTTAAGCAGATTTA                 CCTG CTG CGGG                 TTTTACCTTTCGTCG  67 68
JJN11_RS01250 NONE
JJN11_RS01255  268833 ..  268867 +  -6.3  -3.55444   AAGCGGTTTAAGGAA    GCG-GGCGGTGTGCGA GGCT TCGCACTCCGCGACGG     TTTCCGGGGTGCCGG  61 50
        ssb1  272434 ..  272448 + -11.4  -5.65177   AGAACGAAATAAAAA               CCCTGC CTG GCAGGG               TTTTTTTATACCTGT 100 49
JJN11_RS01275  274338 ..  274352 +  -2.8  -2.78679   TCGCTGAAATCAGGT               GGGGAT AGT ATTTCC               GTTTCGCTGGAAAGC  42 167
JJN11_RS01280  274645 ..  274661 + -13.7  -5.46698   GTTACTGCAAAAAAA              GCTGCCC GGC GGGCAGC              TTTTTTCGTTTTACC 100 54
JJN11_RS01300  278072 ..  278087 +    -9  -4.87665   ATGGTCATAAAAAAA              CCAGAC CCTG GTCTGG               TTTTTATCGCTGGAA 100 73
JJN11_RS01310  280312 ..  280326 +  -6.4  -3.04988   GCGGAAGAGGTAAAA               CAATCG TCG CGGTTG               ATTATTTATAAATCA  55 0
JJN11_RS01315  282484 ..  282496 +  -3.3  -2.76696   TCTGTAAGTACCACT                TCGAG TAA CCCGA                CTTCTTCGCCACCAC  41 246
        soxR  283160 ..  283186 + -12.4  -3.65603   CGGACATATAAAAAA         CTAAAGCGCC ACAACAG GGCGCTTTAG         TTATTCCCGGTCTTT  88 42
JJN11_RS01330  284066 ..  284090 +  -2.8  -2.88832   CAGCAGGGCGGGCCG          TTCGAGATCC CTGGC GGGTCCTGAA          ATTGTTATCAAATTG  42 2
        ghxP  285759 ..  285778 + -12.8  -5.45802   TGCGGCGTAAAAAGA            CGGGTGGC TCAG GCCGCCCG             TTTTTATTTTCAGGA 100 47
JJN11_RS01340  287731 ..  287746 +  -2.5  -4.83169   ATCGCTCTGGAGCGG              GATCC AGCGCA GGGTC               TTTTTATCCAGCCGT  70 221
JJN11_RS01350 NONE
JJN11_RS01355  289814 ..  289828 +  -2.8  -4.56597   GACCTGAGCGGATGC               CTGG CCCTGCT CCAG               TTTTTCCCGCGCCGA  65 147
JJN11_RS01370  294137 ..  294177 +  -9.7   -5.1523   GGGAAAAGTGTGATG  GACGTTGCGGATTGCAG ATAAAGC CTGTGATCCGCATCGGC  TTTTTCTGTTCTGGC 100 114
        gltP  300108 ..  300119 +  -5.8    -3.737   GCCCGGCAAACATAG                TGCC GCCG GGCA                 TTTACTCCCCGCTTA  61 89
JJN11_RS01410  304570 ..  304580 +  -3.2  -4.08767   AATAAACCGCTGTAG                 CTCT GAC AGGG                 TTTTCGCCACGTCGA  58 58
JJN11_RS01445 NONE
JJN11_RS01450  313840 ..  313862 +  -5.6  -3.87869   GTTTATTACCGTAAA          GCCAG-CTC ACCTGC GAGACTGGC           TTTATGAAACATTAC  61 69
JJN11_RS01455  314489 ..  314499 +  -2.4  -3.61398   AGTCAATCACGATCG                 CCTG TGG CTGG                 TTGTTGAGCAGAAAC  47 325
        crfC NONE
JJN11_RS01540  329476 ..  329496 +  -7.5  -4.84492   TCCCTCTCCCGTGAG            GGGCTGAGG AAC CCTCAGTCA            TTTTCTTATGCTTAA  85 46
        proP  333054 ..  333069 + -11.8  -4.36485   GAGTAAATAACAAAA              CCCGGC TTCG GCCGGG               TTTTGCGTCTTTTGT  93 35
JJN11_RS01555 NONE
JJN11_RS01560 NONE
JJN11_RS01565 NONE
JJN11_RS01570  338813 ..  338829 +  -2.1  -3.21276   TGAACTGATGAATAA              CACAGGC CGG GCATGAG              TCTTCTCAAGAGCGC  43 10
JJN11_RS01575 NONE
JJN11_RS01580  341385 ..  341401 +  -2.1  -3.16071   TATCCGCCGGACCGT              ACGCCGT TAT ACGGGGC              TCTATTGATGTACAA  43 1
JJN11_RS01585 NONE
JJN11_RS01590 NONE
JJN11_RS01595 NONE
JJN11_RS01600  345144 ..  345163 +  -9.2  -3.60296   AATATCAGTAATTAA            CAGGAGCC ATAT GGCCCCTG             TTTACCCTGCCGGTA  71 30
JJN11_RS01615  349101 ..  349117 + -11.5  -3.97674   TCCAGAAAGCAAAAA              CCCGCCT TTT GGGCGGG              TTCTTTAAATAGTGG  91 228
JJN11_RS01725 NONE
JJN11_RS01730  362210 ..  362239 +    -2  -5.03145   CAGACATATCTCGAT       TCATCAGGCCTG ATTGTG CGGGCCGGGTAA        TTTTTTACAACGTTC  73 43
JJN11_RS01735  362652 ..  362673 +  -4.3  -2.62184   CCCGGTTCGCTGGAC           GTGTCCCCG TTGC CGGCGACAG            TACTGTGGCGCCAGA  44 93
JJN11_RS01740 NONE
JJN11_RS01745  363722 ..  363736 +  -8.5  -2.82208   TTTATGAACCAGATA               CCGCC GTAGA GGCGG               TGTCCTCCCTGATTT  62 50
JJN11_RS01750  364391 ..  364403 +  -3.3  -2.81133   AGGTCTTCCCCGGTG                TCTGC AGC GCCGA                TATAATCCCTGAATG  43 77
JJN11_RS01755 NONE
JJN11_RS01780 NONE
JJN11_RS01785 NONE
JJN11_RS01790  373307 ..  373346 + -13.7  -2.64416   CTGGCGATAAGGTCG  GCAATACGTGGGTGG AGGGATAAAA CCGCCCGCGTATTGC   ATTGTCGTAGGGATA  84 67
JJN11_RS01795  373814 ..  373839 +  -7.6  -5.35459   GTAGTTAACTAAAAA         TGGTTACCTC CCCGCT GTGGTAACCA          TTTTTTATCATGTAT  93 37
JJN11_RS01805 NONE
JJN11_RS01810 NONE
JJN11_RS01815 NONE
JJN11_RS01820  382913 ..  382935 + -12.1  -3.48378   ACCCTTCTCCGGAAA           TACCTGACC CGGCA GGTCAGGTA           TGTTGTTATGGCGAT  86 472
JJN11_RS01860  388580 ..  388602 +  -9.9  -4.14627   GAGTTTTCAAGGGGG          CCG-GCTTCC TGCC GGAAGCGCGG           TTCTTTCTGTCAAAG  83 131
JJN11_RS01875  391547 ..  391568 +  -5.2  -4.42962   TTGAATAGACTTTAG           CGGACTGCT GATAA AG-AGTCCG           TATTTTTTTAATGTA  69 139
JJN11_RS01885  394083 ..  394126 + -17.8  -3.13522   CCGGCAAATAGTCGC GGATGAT-TCAAGATCCACTT ATT AAGTGGATCTTGATAGCATCC TGTTAGTAAACCGCT 100 419
JJN11_RS01900  396907 ..  396917 +  -4.6  -3.29471   AGCAACGCCGACATT                 GCTG AGC CGGC                 TTAGTCTGGTGCGGG  52 55
JJN11_RS01905  399383 ..  399401 +  -8.1  -4.13767   ACCAGCAGGCGATTA             CGGTCTG TTACC CGGACCG             TTTTCCCCTACCGCA  73 109
JJN11_RS01910  399984 ..  399998 +  -4.2  -4.08144   GTGGCTATTCAATAA               GCTTGC AAA GCAAGG               TTTCTCCTTCATGAG  60 181
JJN11_RS01925 NONE
        cueR  404802 ..  404847 + -12.8  -2.81471   CCTTATTTTAAGGGC ATGATGGCGTAGCACAAAGCT GTATG GGCTT-GTGTTACGCCATCAG TCTAATCAACTTATA  81 43
JJN11_RS01940  407911 ..  407948 +  -7.7  -2.62144   GAAAATAAAGAGTTG   GGTCCCTGAGTTCTTCA TGGA TGACAGACTCAGAGACC    GTATTCTGGTTTGAA  58 33
JJN11_RS01945 NONE
JJN11_RS01950  408673 ..  408687 +  -2.8   -3.2698   ACAAGAAGGGCATTA               GGCTTT CTT AAAACC               ATTTGTGTTTTGGAT  47 45
JJN11_RS01955  410014 ..  410030 +  -5.1  -3.07534   GTCAGTCAGTGCGAC              TCATGCA AGA TGCTTGA              TGTGTATATCGTATA  51 122
        lpxC NONE
        cueR NONE
JJN11_RS01970  415404 ..  415429 + -10.5  -3.68569   TATTAGCATCCTTTA         CATCAGGCCAT TTTA GTGGTCTGATG          TTATTCAATGGATAA  79 47
JJN11_RS01990  419360 ..  419374 +   -10  -3.27774   TGGCTGACAGTCAAA               GACGTG GCT CACGTC               TTCATGGTTGACATA  73 222
JJN11_RS02015  425152 ..  425171 +  -9.2  -3.31196   CTTAGAATGCAAAAA            CGGACCAC CATG GAGGTCCG             TTGATATGAATTTGG  69 392
JJN11_RS02045  431116 ..  431128 +  -3.4  -3.74519   CGGTAGCTTTACCAT                CGTA GCCGA TACG                TTTGATAACCATGTT  52 290
JJN11_RS02060 NONE
JJN11_RS02065  433960 ..  433992 +  -9.8  -3.57561   CTTCATTTCCGCCTG     GGCGGGGATGCTGGC TTAG GTCAGCG-CCCCACC      TTTGCGACATTGCGC  74 7
        fxsA  440430 ..  440455 + -11.1  -2.60075   CCGTAGATTCTGTAG         GCCCGGTAAGCG AAG CGCC-ACCGGGC         GTTAATTAAACCGCA  72 84
JJN11_RS02105 NONE
        groL  443889 ..  443925 + -15.4  -4.37971   GCACCTCGCAGAAAT   GAACAAACCCCCGGTCA GAAA TGATCGGGGGTTT-TTC    TTTTGGTCATCTTTT 100 53
JJN11_RS02115  444360 ..  444387 +  -7.8  -5.24531   CGAACTGATTTGATT        GGTGCCTTTT-TC AGT GATGAGAGGCACC        TTTTTTATAAAAGCT  93 33
JJN11_RS02160  455628 ..  455670 +  -2.7   -3.6761   CTTTTTAATAATATT CAGCCAGCCCCCATA-CTTCT GAA AGGAGATA-GGGGGCTACCGG TATTTGTTACGGCCG  51 321
         efp  457346 ..  457377 + -10.2  -3.28924   TAATTCATTTCGGGA      T-GTTGGGCGCAGCA CTC TGCTGCGCCTTACCA      TTCTAAAGAAGGGTC  75 38
JJN11_RS02175  457542 ..  457552 +  -2.6  -2.97177   CCTGATACTTTCTAC                 TTTT CCT AAAA                 ATTCTTCCTTTTCCG  43 36
        ecnB  458060 ..  458072 +  -6.2  -3.76884   CTCACTGACTTCTTG                GGCG GCCAA CGCC                TTATTAATCGTCTGT  61 301
        sugE  459073 ..  459094 +  -6.5  -3.94634   CATCAAATCCCTGAC           GCGTTGCGG AATT CAGTAACGC            TTGTTTCACCTCATC  66 72
        epmA  464274 ..  464299 + -11.1  -2.75844   CTACGGATTTTGTAG         GCCGGGTAAGCG TAG CGCC-ACCCGGC         ATTTGCACTACAAAC  74 78
         orn  470421 ..  470461 + -10.4  -3.70902   TTTATTAATTTATAA GCGATCT-TTCCGGCAGGC GTGC GCCTGCCGGGGTATAACGC  TTTAAATCTGCACAA  79 26
JJN11_RS02245 NONE
JJN11_RS02250 NONE
JJN11_RS02255  471375 ..  471385 +  -3.2  -3.72576   AACCACGCAGGCATT                 TCGT TTG GCGA                 TTTGCTGCGCAACCG  53 380
         nnr NONE
        tsaE  474389 ..  474405 +  -2.9  -3.17392   TCAGGAAATTCGATA              CTGGC GCGTTTA GCCGG              TTAAGTTAAGAGATA  45 5
        amiB NONE
        mutL NONE
        miaA NONE
         hfq  478994 ..  479010 +  -3.6  -4.13963   CGGGGAGCCAGGTTT              TCTGCG TTCCC CGCTGA              TCTTTTTTGAGAGGT  60 65
        hflX NONE
        hflK NONE
        hflC  482703 ..  482720 + -12.7  -5.82172   AAGCAGCGTTAAAAA             TGGCGCC ATAA GGCGCCA              TTTTTTTATCTTAAT 100 39
JJN11_RS02315  484735 ..  484758 +  -8.8  -4.95876   CAACACCCATCACAG          GCCGGAAAGCG ATG CGCAT-CCGGC          TTTTTCGTTCTCCTT  88 80
        nsrR NONE
         rnr NONE
        rlmB  488619 ..  488629 +  -6.8  -2.52623   TGCGCTTACCGGGCC                 CACG ATC CGTG                 CTGTTGTAGGCCGGG  52 61
JJN11_RS02340  491800 ..  491833 +  -9.5   -3.1082   CTGACCAGCTCGGTC     AGGTGCGAACCCTTC TCCC GCAGGGTTTGCGCCG      TCTGTTCGCTGCGTG  64 60
        yjfP  495509 ..  495535 + -11.6  -2.57162   CAGGATCTTCACGCC         CTGATCTTCCAG TTT CTGGAGGATCTG         TGGGTTAGCATTTTT  75 46
        ulaA NONE
        ulaB NONE
        ulaC NONE
JJN11_RS02390 NONE
JJN11_RS02395  501545 ..  501556 +  -5.8  -3.64703   GATTTGCCGCGTTAC                GGTC TGGT GACC                 TTTACCTAGGGAAAC  61 66
        rpsF NONE
        priB NONE
        rpsR  503830 ..  503840 +  -4.6  -2.50307   TCGTCATCAGTAATC                 GGGC ACG GTCC                 ATTAATACGACTTTA  46 28
        rplI  504344 ..  504362 + -13.1  -4.77757   TTCACCACGTCGAAG             CGCCGGC CTTGT GCCGGCG             TTTTGCTTTTTAACG 100 51
JJN11_RS02430  505414 ..  505437 +    -8  -2.87344   AAGCAGGCCCGGTAA          GCGTTACGCC ACCG GGCGAACCGC           TATCTGGCGCGGATG  59 26
        fklB  506944 ..  506969 + -17.7  -2.60075   AAGCGACCTCTCCTC         TTCCTCTCCCC ACCA GGGGAGAGGAA          ATTAGTTAAAAAACC 100 39
        cycA  508708 ..  508734 + -10.9   -5.4505   TCTTTGCTCTTGTAA        GTCCGGTAAGCG CTAA CGCT-ACCGGGC         TTTTTTATTCCCCGG 100 85
JJN11_RS02455  511394 ..  511420 +  -4.4  -4.19735   AATTACAGCTCTGAA         GCCGGAACGA CCGAAAT TTTTTCCGGC         TTTGCTTTTACCGCA  62 125
JJN11_RS02475  514978 ..  514998 +  -4.7  -3.71848   CCGGTCCCGGCAAAC            TTACCGC CGTAAGC GCGGTAG            TTATTGGTCGCCACC  56 357
        cysQ  517690 ..  517707 +  -8.3   -2.5547   TTCTTCCAGCTGCCA             GGCGCCG CGGG CTGCGCC              GTTGCTGTCGACGAT  53 157
JJN11_RS02495  518671 ..  518689 +   -16  -3.52009   ATGCAGTAAAAGAAA             CGGCTCCC GAT GGGAGCCG             TTGATGTTTCTGGTT 100 51
        tamA  522808 ..  522818 +  -4.6  -2.62316   TTACAGTTTTACATC                 GGTC TGG GGCC                 TGAATTATGAGTTTA  46 5
        tamB NONE
JJN11_RS02520  526955 ..  526978 + -13.2  -5.00616   CAGTACTGATATGAA          TAACGCCACC TTCG GGTGGCGTTG           TTTTTTCAGGCCGCA 100 32
JJN11_RS02530  528924 ..  528937 +  -4.5  -3.49419   GACGCTGCGCTTGCC               CG-GCC TTC GGCTCG               CTTTTTGTAGGCCGG  55 62
JJN11_RS02535  530503 ..  530514 +  -5.8  -3.32997   GCATAAGGAGTAGAT                CGTG ATGT CACG                 TTCACTTTCTCAGAC  57 35
JJN11_RS02540 NONE
        yjfF NONE
JJN11_RS02550  534184 ..  534212 + -20.3  -3.53012   AGGCGTAGCCTTATC        GCCTTCCGGCGCC GCT GGCGTCGGGAGGC        TTTCCGCGCCAGCCG 100 33
         mpl  537691 ..  537713 +  -7.6  -4.57837   CACGCAGATCCGGGT           CGAGCGGGAT TTT ATCCAGCGCG           TTTTTACCCAGCTCT  83 501
        pmbA  539461 ..  539478 +  -9.9  -3.28791   AGCGCAAGCGCTGTT             CAAGGCA CGTG TGCCTTG              TTCTGCAACGCGAAT  73 170
        cybC  539956 ..  539985 +  -9.3  -2.87229   TACGTCCTCTCCCCG       TGTGCGGAGGCG CACTAAA CGCCTCCGC-CG       GTTTGCTCCTACAAT  65 56
JJN11_RS02590 NONE
JJN11_RS02595 NONE
JJN11_RS02600 NONE
JJN11_RS02605 NONE
JJN11_RS02610  543042 ..  543059 + -14.1  -3.21276   GCCCTTTAATACCCG             CGGGCGC TCCG GCGCCCG              TCTTCTCAGGAGAAC  90 32
JJN11_RS02615 NONE
JJN11_RS02620 NONE
JJN11_RS02625 NONE
JJN11_RS02630 NONE
JJN11_RS02635  549203 ..  549226 +  -3.9  -2.88031   TTCGATGTAATGCGA          ATGTAATGC TAAACT GCATTACAC           ATTCGTTTTTACCGG  45 57
JJN11_RS02640 NONE
JJN11_RS02645  550011 ..  550038 +  -3.3  -3.74251   GCGGGTGCAGCGGAT        CGCCGCCGGAT AACGAA ATCCCCTGGCG         TTTGATGCGCGTGTC  52 271
        mgtA  560142 ..  560175 + -13.9  -2.75825   CGGGTGGCAGTGATT     TTTGCCGGGTAG-GGC GAA GCCGCCGCCCGGCAAA     TGGCTTTCTTCCCAA  88 28
JJN11_RS02680  562964 ..  562974 +  -2.4  -3.85817   TTCGGCTGCAGTACC                 ACGG TGC CCGC                 TTTGTAGGAGGCGAT  53 310
JJN11_RS02710  567119 ..  567142 + -13.2  -3.90684   TGGCCTGACGCCTTT          C-CCCTCTCCC GTC GGGAGAGGGAG          TTTCATCCTTTCATT  95 33
JJN11_RS02715 NONE
JJN11_RS02720  570208 ..  570237 + -15.1  -4.76041   ATATTTATTGCTCTT       GTCGTCTACGGAA AATA TTCCGTGGACGGC        TTTTTCATGCCTGTA 100 43
JJN11_RS02725 NONE
JJN11_RS02730  573804 ..  573850 +  -6.5  -3.41989   GCGGTGGCATGCACC GGCAGGC-GACGGCCAATGC GGGAGTAG GCGATGGCCGCCAGTTTGCC TTCAATTTTCTCGAT  56 391
JJN11_RS02740  574841 ..  574862 +  -7.2  -3.90744   GGATAATTTGAAAAG           CAGGAGGG CCAAAA CCCTCCCG            TTATTTAAACGCAAC  69 51
        rraB NONE
        miaE NONE
JJN11_RS02760  578077 ..  578109 +  -2.6  -2.78463   CTTAACGCGGTTTAG     CGCGTCGC-CGCTTGC ATG GCG-GCGTGCGACAGG     TATAATCCACAACGT  42 64
JJN11_RS02765  578641 ..  578658 +  -2.7  -3.01712   CCCTGATGAAGTCGC             CAG-AGGC TCC GCTTGCTG             TCTTACCACCAACGG  43 439
JJN11_RS02770  580394 ..  580405 +  -3.6  -3.39288   CTTCTGAAGACGGAA                CCGG AGGG TCGG                 TATTGTTCACCCGTC  48 293
JJN11_RS02810  589408 ..  589418 +  -3.2  -2.92192   AAAACGCCTTAACGC                 GGGA CAA TCTC                 TGTAATTCACTCAGA  45 10
        patD  590890 ..  590922 +  -5.4  -4.63172   GCACTAACGGCATTG     CCCGGCGGCGC-TGC GCTT GCACGGGCCTACGGG      TTTTGTCATTTCGTA  73 34
JJN11_RS02820  591999 ..  592011 +  -4.9  -3.22516   AGATTCTCTTTGAAA                TTATC ACT GATAA                TGTTCGTATAATATT  49 524
JJN11_RS02850  598266 ..  598307 +  -4.2  -2.89881   CCCGGTCCGCTAAGT TAACAGCGGCATGCTGGG CCCTCA TCCGGCCTGCCGCTGACC  TCTCTGGAGTGCATC  45 28
JJN11_RS02855 NONE
JJN11_RS02860 NONE
JJN11_RS02865 NONE
JJN11_RS02870  604910 ..  604933 +  -8.8   -3.6003   GCGGGCCTGCATTTT          GTCCATCACC CGTC GGCGGTGGAC           TTTGACGGTGATTTC  66 92
JJN11_RS02895  608668 ..  608684 +  -7.9  -3.05463   ATCAGGGTCTTTACG              CTGGCGG AAA CCGGCAG              TTCAATAAACGGGCT  57 284
JJN11_RS02905  610038 ..  610071 + -15.1  -2.71712   CGACGAATGATCACA     AAGGCGGCGCGGGGC ACAG GCCCCACGCCGCCAA      CTTTAAGCGGCGAGG  95 31
JJN11_RS02915  610730 ..  610758 + -14.7  -3.74101   ACCAGGCGGATATAT        TTGAGCTCCGGCA TCT TGTCGGAGCTTAA        TATTTATTAAATTTG  95 52
JJN11_RS02920  611776 ..  611787 +  -5.8  -2.87132   TGCCACCGCCTTTCG                CCGT CGCT ACGG                 TATCTGCCCCGGCGC  52 55
        foxA  614538 ..  614551 +  -8.1  -2.82023   TGGCGGGCACGTTGG               TGCCG CTGG CGGCA                TACTTCATGTGCATA  54 512
JJN11_RS02935  616012 ..  616023 +  -5.8  -3.99805   TCAGCGCAACAGTGC                CAGC GTCT GCTG                 TTTCGGTTTTTCCAG  66 135
JJN11_RS02945  618464 ..  618489 +  -3.2  -3.08046   CGATATCGATCATCC         GCGCTTCG CTTACCGCTT CGACGCGC          ATTTTCGGGTAGCGG  43 521
JJN11_RS02955  620533 ..  620544 +  -5.8  -3.01791   CCCCGGCGCACGAAA                GCGA CATT TCGC                 TCTTCACCGAAGCAT  53 185
JJN11_RS02960 NONE
JJN11_RS02965 NONE
JJN11_RS02970  622033 ..  622059 +  -9.4  -4.66535   CCGGGCCTACAAAAA         GTAGCCGCATAC TCT GTATGCGGCTTG         TTTGTTTTAGAAGTT 100 66
JJN11_RS02985  627210 ..  627222 +  -4.9  -3.32343   CTTGATACTTACCCT                GATAA CTA TTATC                TTCTCAGCGTGTGAA  52 175
JJN11_RS02990 NONE
JJN11_RS02995 NONE
JJN11_RS03000  629871 ..  629888 +  -7.7  -3.36135   GGGGATAAATGATAA             TGTGCGG TAGT CTGCACA              TTACTTCGCCCTTCT  64 29
JJN11_RS03005 NONE
JJN11_RS03010 NONE
JJN11_RS03015  634012 ..  634027 + -11.8  -5.40072   GCGTAATGCGCAGAA              GGCCGG CGAT CCGGCC               TTTTTTTAGCGGCCC 100 35
JJN11_RS03035 NONE
JJN11_RS03040 NONE
JJN11_RS03045  638532 ..  638544 +  -9.1  -2.92656   CTCACGCCACCCGCC                GGGTG GCA CACCC                TGTATACCTAACTTT  66 500
JJN11_RS03050  640013 ..  640031 + -11.7  -5.42265   CTTTACCGGTACAAA             GGCGGCA GCGGA TGCCGCC             TTTTTTATGCTTTGG 100 45
JJN11_RS03060  642202 ..  642214 +  -9.1  -3.56325   CAGCTCCACCACAAT                CGACG CCA CGTCG                TTCTGCTTGTCCGCC  66 340
JJN11_RS03215  675386 ..  675396 +  -6.8  -3.03771   TGGTGGGGGGCTGAC                 GCCA TCA TGGC                 TGTTCAGCAATATGA  55 467
JJN11_RS03235  678864 ..  678883 +  -4.4  -4.60041   CTAAAACACTCAACC            TGA-AGAGA TGC TCTCTCTCA            TTTTTGGAAATAACT  68 259
        hpaR NONE
         tsr  690669 ..  690694 + -13.3  -4.82901   ACCTTCTGATGTGAA         TAGCGCCCTGT TCAG GCAGGGCGCTG          TTTTTGTGCCCGGCG 100 32
JJN11_RS03305  694441 ..  694467 +  -9.4   -5.7946   TTAACGGTTGCCATG         CAGCGCCCGG GGAGGTG TTGGGCGCTG         TTTTTTTCTTGCGAA 100 37
JJN11_RS03350 NONE
        bglJ  703377 ..  703387 +  -8.2  -3.59979   GATGTCGCAATAGAC                 CGCC AGC GGCG                 TTTCCAGTCCGAAAG  62 202
JJN11_RS03365  705384 ..  705403 + -13.6  -4.43213   TTAATAAAAGCAAAA            CGGCAACC CTTG GGTTGCCG             TTTTCATCTATTGGA 100 37
JJN11_RS03375 NONE
JJN11_RS03400 NONE
        rimI NONE
        yjjG  709808 ..  709826 + -13.1  -4.57341   TTTCGTATTCATGAT             GCGCGGC CCGCT GCCGCGC             TTTTTAAAGAAGATT 100 77
        prfC  711447 ..  711468 + -15.9  -2.75712   ATTAATCCCTTCCCG           GAGCACGGC AGCT GCCGTGCTC            TGCTTAAATCCCTGC 100 36
        osmY NONE
JJN11_RS03425  712673 ..  712693 + -13.3  -5.30616   GTATGTTGATGAAAA            GGCCCATGT TAA GCATGGGCC            TTTTTCTTTGGCTGA 100 52
JJN11_RS03430 NONE
JJN11_RS03435  714877 ..  714906 +  -8.5  -2.70936   GCAGGCGCAGCTCGC       TCAGCCGGCTGTGC GCT GC-CAGCCAGCGGA       TGCTGTGCTTGATGA  61 259
        deoC  718097 ..  718108 +  -7.2  -3.68222   CGGATAAGGCGTAGC                CGCC CTCC GGCG                 TTATTCCGCTTCGCC  67 61
        deoA  719495 ..  719516 +  -3.8  -2.67708   CTTCGGTCTATCGTC           GTATTACCG AATAG CGGTA-TAC           TGATCTGATCGCTTT  44 12
        deoB  720802 ..  720821 +  -2.8  -5.24129   CGCTGCCCGGCGGCG            CGT-GGCTT GCC GGGCCTACG            TTTTTTGTAGGCCGG  77 44
        deoD  721621 ..  721639 + -13.8  -5.47431   GAGTAAGATTTACTG             CGGGGGCG TTC TGCCCCCG             TTTTTTATCTATTCA 100 35
        yjjJ  723123 ..  723138 + -11.8  -5.46657   GGCCTACGGTTACAG              GCCCGC GCAA GCGGGC               TTTTTTATTACCGTA 100 73
        serB NONE
        radA NONE
        nadR  728681 ..  728700 + -13.6  -4.39318   CGGCACACATAAAAA            CGGCAACC CGTG GGTTGCCG             TTTTGCCTTTACTTG 100 105
        sltY NONE
        trpR  733183 ..  733208 +  -8.9  -3.03771   CCTCCGGGAGCGGCA         GGGTGGCGGAG CGGG CTTCGCCGCGC          TGTTCAGCGCTCTCG  60 292
        gpmB  734427 ..  734439 +  -3.3  -3.58037   TTCGACCCCTGAATA                TAGCC ATT GGCCA                TTTCCGGCGTTAATG  49 263
        creA  735750 ..  735774 +  -2.7  -2.70932   TTAATTCAGGGACAC          GCCATGCAGCA ACC TGTGGTCTGGC          TGGTTGAAGACGAAA  41 37
        creB NONE
        creC  737887 ..  737898 +  -5.8  -2.82516   AACTGACCCCACATA                GCCT GGTT AGGC                 TCTCCTCATCACAAA  52 46
        creD  739281 ..  739296 + -11.8   -5.3236   TGGAAATAAAAAAAA              CGGCGC CAGG GCGCCG               TTTTTTATGACTTAT 100 32
JJN11_RS03555  740626 ..  740636 +  -5.4  -4.85599   TGCGTAATATGATGA                 TGTG TAT CACA                 TTTTTATCGGCTAAC  78 379
JJN11_RS03560 NONE
        thrL  741665 ..  741687 +   -12  -5.78622   AAAGAAAAGAAAAAA           GCCCGCAC CTGAACA GTGCGGGC           TTTTTTTTCGGCTAA 100 45
        thrA NONE
        thrB NONE
        thrC  746506 ..  746532 + -12.3  -5.24129   AGGCCGCACAATCCA        GCCGGG-GACGC CTCT GCGTTACCCGGC         TTTTTTATGGAGAAA 100 126
JJN11_RS03585  746986 ..  747011 + -11.1  -2.80492   GGAAGCATCACTAAG         ATTTCCCCGCC GGGC GGCGGGGAAGG          TGATTACTGCTCGTG  74 27
         tal  750509 ..  750532 + -18.2  -2.72152   GCTGTAATCATTCCA          GCGTGACCGG GCTC CCGGTCACGC           TACCTTTCTCATACC 100 34
         mog  751232 ..  751244 +  -4.1  -2.71765   CATAAGCTGTAACGG                CAGTA GCG TGCTG                ATTGATTTACGGTAT  44 58
JJN11_RS03610  752618 ..  752636 +   -16  -4.87665   CGCGGGATAGCAAAA             TGCCGGGC TGG GCCCGGCA             TTTTTATGAGTGCGA 100 31
        dnaK  758697 ..  758739 + -11.8  -3.01924   TTTGAACGGGTAATA CACTGGCACGGGCGAAGAGG TTT CCTCTCCGCCCGTGCACGCA TGTTAGGGGCAGATA  78 47
        dnaJ  759920 ..  759939 + -13.6  -5.28176   AACGTTGTCCGCGAA            GCCCGGAA GCGA TTCCGGGC             TTTTTTATCCCTGAA 100 50
        nhaA NONE
        nhaR  762216 ..  762230 +  -8.5  -4.17048   GAAGGCATAAAAAAA               CCCGC ATTAA GCGGG               TTCTTTTAAAACAAG  77 39
        ribF NONE
        ileS NONE
        lspA NONE
        fkpB NONE
        ispH  768649 ..  768671 + -12.8  -5.27477   AATAAGGTTTAAAAA           TGCCAGTCAT CAG GTGACTGGCA           TTTTTTCATTCAGAT 100 36
JJN11_RS03695  770443 ..  770457 +  -6.4   -3.5764   GCATCGGCCGGCGGT               TATGCG CTT CGCGTA               TTTGCCGCTGAACTT  61 174
JJN11_RS03700  771274 ..  771292 + -17.4  -2.90496   CCATCCGTAACGTAA             GCCGGGGC ATC GCCCCGGC             TCGTTTAACCGGCAA 100 31
JJN11_RS03730  776857 ..  776874 +  -3.3  -2.81547   TCGGCGTTTTCAGAT             GGCGGCA ATCT TGCTGGC              TGGTTACTCTGGAAA  43 93
        dapB  777799 ..  777817 + -11.8  -4.33653   TTAATTGATTGCACA             GGGCAATA TTT TATTGCCC             TTTAATTTTTAAGTC  93 80
        carA NONE
        carB  782624 ..  782651 +  -4.6  -3.17075   GGCGGGTAAGCGAAA        GCGACGCCGGGC AAAT GGCGGGTGGCGC         TTCGCTTACCCGCCC  50 58
JJN11_RS03750  783022 ..  783043 + -14.5  -2.66106   TAACTGATAAAAAAA           TGCAGTGGC CTGC GCCACTGCA            TCGGTTGTTGCGGTA  90 34
JJN11_RS03760  786130 ..  786144 +  -2.2  -5.27923   GAATAATCTTAATGC               TAAATA TGA TGTTTA               TTTTTTATGGAATTA  76 252
        kefF NONE
        kefC  788732 ..  788778 +    -3  -5.08824   TTCCTGTTCTTTACT CTGCCGCCAGTCGAC-GAAAG ATTAAG CTTTCCGTATAGTGGCGGCAA TTTTTTGCATCCGGG  74 69
        folA  789289 ..  789321 + -14.9  -2.52742   CGCCGCTAATGTGGT      TACTGCACCTTTCCC GCC GGGAGAGGTGCAGCG      CTCTTCTACGACGCT  89 32
        djlA  797345 ..  797355 +  -4.6  -4.07568   AGCTGGTGCGAGCGG                 CCGG TAA TCGG                 TTTTAGCAGCACGCG  62 254
        araC  808625 ..  808637 +  -4.8  -3.16564   AGCAGGGCGCTCTTC                GCAG AATCC CTGC                TTCGTCACCTGACCG  50 119
JJN11_RS03850  809454 ..  809468 +  -7.1  -3.66178   TGGATCCCCAGCAGG               CGCGA CGCGC TCGCG               TTTCCGCTTGCCAGC  67 51
JJN11_RS03875  814794 ..  814816 + -14.2  -5.50313   GGTGCTAATCACCAC           GCCAGCAGGT ATC ATCTGCTGGC           TTTTTTCATTTTCTC 100 70
JJN11_RS03880  816039 ..  816064 +   -12  -3.63895   GTCTGAATAAAAAAA         GAGTCCATTG ACTGTG CAATGGACTC          TTTAGCGTGATTAGC  88 35
        leuO  822522 ..  822560 + -11.2  -4.43714   CCGGCGATAAATGCG   GTCAGGATAAATTTCAGT GTT ATTGCTATTTATCCTGAC   TTTCTTATCGTTTCT  91 31
        ilvI NONE
        ilvN  825142 ..  825162 + -10.4  -5.75342   GTTCGCCTCTCTATT            GCCCGGTG CGATT TACCGGGC            TTTTTTTTGCGCACC 100 50
         cra  826307 ..  826330 +   -11  -3.17475   CCGGTCATAAGGGAC          GCAGGGCAGT GGAA ACTGCCCTGA           ATTTATTGCATTTAT  76 31
        mraZ NONE
        rsmH NONE
        ftsL NONE
JJN11_RS03940 NONE
        murE NONE
        murF NONE
        mraY NONE
        murD NONE
        ftsW NONE
        murG  837977 ..  838003 +  -4.2  -5.44721   CAGCCCAGGCGTAAC         CCTCGCAGCGCG TGT TGCGCTGCACGA         TTTTTTTGAAGTAGT  83 27
        murC NONE
JJN11_RS03980  840411 ..  840423 +  -3.4  -2.99471   GGTCCGCATTCTGGA                TCAG GCGGG CTGA                TATGTCTCAGGCTGC  45 13
        ftsQ NONE
        ftsA NONE
        ftsZ  843782 ..  843804 +  -7.7  -3.08312   TGCTAAACTGGCCGC           CCGATAGTG ATGTA CACTCTCGG           TTGGATAAGTAACTT  60 75
        lpxC  844775 ..  844818 + -10.3  -5.71295   TCCGTTATGTAAATT CGACTGGTTGACCTGGC ACTCTCTCCG GCCAGGAAGACCAGTCG TTTTTGTTTTTATCT 100 49
        secM  845537 ..  845552 +  -3.9  -3.66497   ATACCTTAATTTAAC              TGCCC ATCATG GGGCG               TTTGAGAATTTATTA  55 56
        secA  848292 ..  848309 + -12.7  -5.28176   GTAAAACACGTAAAA             GGCGCAG ATAT CTGCGCC              TTTTTTATGGATGCA 100 45
        mutT  849208 ..  849238 +  -6.8  -2.74461   GATCAGCGACAGCGC       CTGGTTCAGCGGCT CAA GGCTGTTCAGCCAG       CTTTGCACCTGCATA  51 514
JJN11_RS04035  851603 ..  851626 + -19.6   -3.2963   GCCTGTAATGCTTCT          CGCTGGCGCG TTTT CGCGCCAGCG           TTATCCCGCACTCAT 100 33
        ampD NONE
        ampE  857263 ..  857287 + -12.9  -4.43911   GAGTGTATCAGCTGA          CGGGATGCC GAAATCG GGCATCCCG          TTTTCGTTCCAGTTT 100 62
        pdhR NONE
        aceE NONE
        aceF  867150 ..  867167 + -14.1  -5.49569   GATGTAAGTAAAAAA             GCCGGCC TGAC GGCCGGC              TTTTTTCTGTTAATC 100 34
        lpdA  868817 ..  868831 + -12.8  -5.64274   CTGGCTCTTAATCAG               GCGGCC TGT GGCCGC               TTTTTTTGTGCCTGC 100 77
JJN11_RS04105  869285 ..  869314 +  -9.9  -3.06228   GGGATAATGCTGATT       CCCGGATGCGGAG CAAA CACCTTATCCGGG        CTTGTTTATAATCGC  69 34
        acnB  874631 ..  874650 + -11.4  -5.85244   ACCGGGCCTGTCAAA            CCCATCGC ACAC GCGGTGGG             TTTTTTATTTTCATT 100 73
        yacL  875103 ..  875130 + -10.6  -2.53822   CGTGAAGCAGAAATA        GTATCAGGAGCA TCCC TGCTCCTGACGC         ATCTTATACGGTCGC  69 25
        cueO  879001 ..  879028 +  -9.9  -4.77759   GAGCTCGAACTGTAG       GCCGGGTAAGGCG AAGC CGCC--ACCCGGC        TTTTTAGTCACTTAT 100 78
         hpt  882220 ..  882237 + -11.3  -4.39318   CCTGCGGACTAAAAA             CGGCAAC TTGC GTTGCCG              TTTTGCGTTTACTTG  91 76
JJN11_RS04165  883935 ..  883948 +  -3.1  -3.76224   AGAAACAAGGAGATC               GC-GCA TGA TGCAGC               TTTACTGGGTGGCGC  51 18
JJN11_RS04170  884715 ..  884743 + -12.3  -3.08812   GCGTAGCTAACCATC        AGGCCCGGCGGCG TTC TGTTGCCGGGCCG        CTTTATTGACCACCG  81 31
JJN11_RS04175  885257 ..  885273 +  -5.1  -3.16088   CGGAGAAATATTAAA              CATTGGT ATT ACCGGTG              CTTTTGCTACAATGT  52 27
JJN11_RS04180  886641 ..  886657 +  -5.7  -3.21218   AAATAGGCCACTTTC              GGCTGCC AGC GGCGGGC              TTCCTCGTCGGACAT  51 101
        hrpB  896100 ..  896112 +  -9.1  -2.64651   CGCCACCCGGCAATA                CCCTC TGA GAGGG                TAAATTTGAGAGATT  63 41
        mrcB  898724 ..  898747 + -15.4  -4.15453   GTTAACTCACCACTA          TTCCCTCTCC TGCG GGAGAGGGAA           TTTTCACCTCAATTA 100 36
        fhuA  901211 ..  901229 + -11.7  -4.99947   CTAACCTTTAAATTT             GGGCACG TTTTT CGTGCCC             TTTTCTTTACTTAAG 100 37
        fhuC  902027 ..  902055 +  -3.7  -3.22215   GCATCCTGCGGGAGC        GGCACCGGTGAGC TTT GTCTACTGATGCC        TGATTTTATGATTAG  46 1
        fhuD NONE
        fhuB  904950 ..  904964 +  -3.4  -4.37092   CTTCGCCTTACCCGG               CCTACG GTT CGAGGG               TTTTGTAGGCCGGGT  63 58
        clcA NONE
        erpA  908269 ..  908310 +  -3.5  -3.14978   TTCGTTCAGCATCTG ACGGTAATGCCCGGTG-GCG CTT CGCTTACCGGGCCTACTCGC TATCTTCCATTATCA  46 25
         dgt NONE
        degP  913605 ..  913632 + -15.6  -5.33866   GCAGTAATCCGTTCA        GCCCCTGCTTCC CTAC GGAAACAGGGGC         TTTTTTCTGCCTTTC 100 34
        cdaR  915203 ..  915228 +  -3.9  -4.13767   CACCTCTTTGTAACC         CTGGCCGATGCC ATC GGCAACGAC-AG         TTTTACGCTGGCGCG  62 315
        rpsB  920977 ..  920995 +  -8.8  -5.24449   TACCGTGTATGAATA             GGGGCC CATTACC GGCCCC             TTTTTTCAATTTATA  95 62
         tsf  921920 ..  921941 + -15.9  -4.96848   CTTAATCAGCGAAAA           GAAGCCGCC TGAG GGCGGCTTC            TTTTTGTGTACGGCA 100 36
        pyrH  922849 ..  922859 +  -8.2  -3.44319   TTTCTTACCTGGACA                 CGCC CCG GGCG                 TTGTCATGAATTAAA  69 90
         frr  923533 ..  923568 +  -9.1  -4.74012   CGTAATCTGATAAAA   CGCCGTACAG-AAGGCC TTTG GGCTTTGCTG-GCGGCG    TTTTGCTTTTCTGGT 100 48
        ispC  924904 ..  924921 +  -8.4  -5.08824   TCTGTGGTCAGGTAA             GCCGTG GTATAA CACGGC              TTTTTTACGTAAAGG  93 127
        ispU NONE
        cdsA NONE
        rseP  927968 ..  927985 +  -2.7  -3.01712   ACTTTTCAATGATTT             CTCTC GGTTGTAA GAGAG              TGTTAGGAAGAACGC  43 13
        bamA NONE
         skp  931022 ..  931032 +  -6.8  -3.08464   CATCACCGCTGATGT                 CCTG AAA CAGG                 TTAAATAAGTAATGC  55 7
        lpxD  932095 ..  932132 + -13.4  -3.97139   GTTTAACGCACACTT   CCCGGCCTGTCGGCTT TCTTAT AAACCGGCAGGCCGTG    TTATTATTGCCATTC 100 57
        fabZ  932610 ..  932631 +  -4.3  -2.77899   ACCATGATGTGTGCG           CGTAGCCGG GAGG CCTGATACG            TGATTGATAAAACCG  45 8
        lpxA  933396 ..  933411 +  -2.6  -3.41693   GAGTTCTTCGCACGC              TCA-ACC CGT GGTCTGA              TTCGTTAATGGTCGA  47 2
        lpxB NONE
        rnhB NONE
        dnaE NONE
        accA  939670 ..  939687 +  -8.4  -5.72616   GCAATAATCTTAAAA             GCCGCA CCCTGT TGCGGC              TTTTTTTATGTCCAT 100 46
JJN11_RS04410 NONE
JJN11_RS04415  942356 ..  942378 +  -9.8  -2.51133   TTGCCTCGCCAGGGA           ATGCCCGGTA ACG TGCCGGGCAC           CTTCCTGGATAAATG  66 44
        tilS  944005 ..  944018 +  -8.1  -4.96848   ACCAGTAAATTCGCA               GCAGC ATAT GCTGC                TTTTTCTCTGACCGA  90 338
JJN11_RS04435 NONE
        arfB NONE
        nlpE  946070 ..  946094 +   -10  -2.57564   GTCTCGTTGAGAAGC          TGGGCCGG AGGGGGTTG CCGGCCCA          ATTATCAGGGCCTGA  66 31
        gmhB  953467 ..  953491 +  -7.1  -2.62263   AAAAGCGAAAATAAT          CGCTTGACTCT GAA AGAGGAAAGCG          TAATATACGCCACCT  56 180
JJN11_RS04490 NONE
JJN11_RS04495  955367 ..  955379 +  -6.3  -3.55622   CTCAGGCCTACCAAA                TTTGC AAC GCAAA                TTTGAAGAGATTGAC  61 28
JJN11_RS04500  955500 ..  955533 +  -6.7  -4.49756   GCGAAAACCTGAAAA     CTTCAGAGTGTACCT GCGA AGGTGCGCTGCGAAG      TTTTGCTCTTTAAAA  77 49
JJN11_RS04505  958582 ..  958596 +  -6.4  -2.64274   CTTAACCTTACAACG               CCGAAG CTG TTTCGG               TGGATTTGAGAAGAT  53 32
         rrf  958906 ..  958921 +  -4.7  -2.71144   AAATTACGTAATAAA              CCAGA ACCATA TCTGG               TAATTACAAAAAATA  46 44
JJN11_RS04515  959029 ..  959050 + -15.9   -5.4833   GCCACTTATTAAGAA           GCCCTGAGC TCAC GCTCAGGGC            TTTTTTCTTGCCTGC 100 37
        dkgB  960019 ..  960036 + -11.3  -4.21462   CCCCGAACCCTCTCA             CAGCTCC TTCG GGAGCTG              TTTTACATGCTCGCT  87 59
JJN11_RS04530  962239 ..  962251 +  -7.7  -3.13344   ACAGCTCAGCGGAAT                CTGAG TAA CTCAG                TAGTTTCTTAGTAAT  62 66
JJN11_RS04535  963179 ..  963203 +  -6.4  -4.91852   GTCAGGTCTGCCGTG         GGGCAG-GCCT GTAC GGGTGCTGCCC          TTTATTTTTCATCAA  83 47
JJN11_RS04555  967190 ..  967207 +  -9.1  -5.11033   CACCGGTTTTTTGTC             CGCGGTT TTCC AGCCGCG              TTTTTTCCAGTTGTG 100 215
        dnaQ  968484 ..  968494 +  -2.4  -2.76189   GTTCCCAAGGGAACA                 CAGC GGA GCGG                 TAGTTCAGTCGGTTA  40 152
JJN11_RS04570  968571 ..  968596 + -16.3  -5.14477   GTTCCGCCACATTCA         GGCCCATGTTA GCAA TAACATGGGCC          TTTTTTCGATCTCTG 100 32
JJN11_RS04575  969544 ..  969600 + -16.5   -3.6715   GTAACAAACAGCAGA GCCGCACCGCTCCTGTCCCTTTATGCC GAT GAGGTGAGGGGACAGGGACAGTGCGGC TTTACCCTTCAGTCA 100 71
        lpcA  973758 ..  973780 +  -9.1  -3.22475   GTTAAGTAAGACTTC          GCTGGGGGGT GAGC GCCCCCC-GC           TGTTGTGGAGGTGAG  67 32
JJN11_RS04595  974995 ..  975005 +  -2.4  -4.13945   CTGAACGCTGTAGAA                 CCCC TCC GGGC                 TTTTGAAATCGCCCT  59 455
JJN11_RS04605 NONE
JJN11_RS04610 NONE
JJN11_RS04615 NONE
JJN11_RS04620 NONE
        nqrE NONE
        nqrF NONE
        nqrM  981764 ..  981784 +   -14  -5.63103   ATCCTCTGAAATAAA            CAGGCCGC ATCAA GCGGCCTG            TTTTTTTACTTAAGC 100 32
        dinB  984112 ..  984133 +  -2.2  -5.00616   TTGGCCCGATAGACA           CCATATCC ATATCC GGGTACGG            TTTTTTGAACAGACC  74 284
         gpt  986181 ..  986205 + -16.5  -5.02074   CTAATCCATATTTTT          TAACGCCCGGT GAT GCCGGGCGTTA          TTTTTTCGCCACTGG 100 37
        frsA NONE
         crl  987999 ..  988015 + -10.8    -5.252   AAGACAATAAAAAAA              CCCGGC GCTTA GCCGGG              TTTTTTATCGGCATA 100 54
        proB NONE
        proA  991758 ..  991794 + -13.6   -2.9155   CATTCGCGCCTGATT    GCCTGCGTGGGCAGCC TCAGC GGTTGCCCGCGCTCGC    TCTGGTGTTGAGACC  85 28
JJN11_RS04690  995180 ..  995192 +  -3.3  -3.05463   ATCATCAACACGCCG                CCGAA AGG TACGG                TTGCGTCAGCACCAT  43 412
JJN11_RS04730 1001504 .. 1001524 +  -6.7  -2.87243   GGCGCCGCTCCCAGC            GCGGCCTGT AAC ACCGGCAGC            TCCTTGTGCTGATCG  51 353
        uxuA 1010774 .. 1010784 +  -5.4  -3.89448   GCTCACCTGGTGACG                 GCAT TTC ATGC                 TTGTCTGTTTTTGAA  61 52
JJN11_RS04780 1014227 .. 1014241 +  -2.1  -3.67068   GTAACAGCATACAGT              TCG-CC AACT GGTCGA               TTTCCCAGTTTTCGT  51 363
        mmuP NONE
        mmuM NONE
        tauA NONE
        tauB NONE
        tauC NONE
        tauD 1035393 .. 1035404 +  -3.6  -2.65354   GGGCTTCGATATACC                GCTG ATAA CGGC                 TGGCTTTCAGATAAC  42 93
JJN11_RS04890 1041472 .. 1041491 +   -15  -3.80733   GTAATATGTCTGATG            CGGGGAGG CCTG CCTCCCCG             TTGTTATAGCGTCAG 100 37
JJN11_RS04895 1042317 .. 1042332 +    -6  -4.43844   ATATAGGTGATGAAT              CCGCCG CCAC CGCCGG               TTTTCTGAATAATGC  74 188
        sbmA NONE
JJN11_RS04910 1046171 .. 1046183 +  -3.3  -4.88407   GCGTATGCAATATTT                CCTGC CGT GGAGG                TTTTTGGTTGCCTGG  76 260
JJN11_RS04920 1047184 .. 1047206 +  -6.2  -3.72576   AGACGTACCGCTTCG           CTGAACTGCG CTT CGCTGTTCAC           TTTGCTGACGCCCAC  61 509
JJN11_RS04930 1048617 .. 1048627 +    -4  -3.56821   GCAAAAAGGGGAAAG                 TATG TGA CATA                 TTTCACAAATATGAT  52 19
JJN11_RS04935 1049994 .. 1050022 +    -9  -4.06096   TATATTGATATCTGG       CCGCCATTATCAT TCCT GTGA-AATGGCGG        TTCTTGTATTTAATT  78 54
        iraP 1050745 .. 1050758 +  -5.2  -3.49966   ACTGTGCGAAATTAT               CCCG ATGGCG CGGG                TGGTTTTTTTAGCAG  56 301
        psiF NONE
        adrA 1052357 .. 1052382 +  -3.3  -4.19704   GACGTCCGGCTGTCG         GTCAGGATTTGC TTA GCAGCTC-TGAC         TTTTCCATGCACTTG  60 39
JJN11_RS04965 1053752 .. 1053763 +  -3.6  -4.39133   CAGGGGTAATCATCG                CTGC GTGA GCGG                 TTTTGGTCATTATTA  63 32
        aroL NONE
JJN11_RS04975 1054980 .. 1054991 +  -2.2  -3.48276   GTGCCTGTATCTGTG                TCAC GGTA GTGG                 TTGTATAGAAAGGCG  47 219
JJN11_RS04980 1055711 .. 1055723 +  -3.3   -3.1352   TTGCGTGACAGGTAC                GGAGT GTC ACCCC                TATATTGGGTTGACA  46 46
        ppnP 1056425 .. 1056453 +  -7.4  -3.62597   CTTTCAGCTCGGCTT        CGTCCAGCAG TTGGAAGCC CTGCGGGACG        TTGTTGCCCCGTACC  60 403
         mak 1058479 .. 1058499 +  -6.2  -2.58579   CAGACGCATCAGCTG           CTGGT-TGG CGAG CCATACCAG            GTTGTCGAGAGTTAA  48 470
        phoB NONE
        phoR 1064633 .. 1064654 + -15.9  -4.08317   AATCAGAAATTGCCA           CAGGCCAGC CAAT GCTGGCCTG            TTTGCTTTGCAGTTC 100 53
        brnQ 1066354 .. 1066376 +   -17  -6.17033   CGGATAAATGTTCAA           CCACGGGGCT TAT GGCCCCGTGG           TTTTTTGTTTTTTTT 100 45
        proY 1067793 .. 1067812 +   -15  -4.91109   GCTCAGTAACCGAAA            TGCCCGGC AAAC GCCGGGCA             TTTTTCTCCTCCCCC 100 32
        malZ 1069741 .. 1069758 +  -3.3  -4.14243   CGGCAGTTAATGTCG             GGCGGGA CGGT TTCCACC              TTTTAAGATGGCGTA  60 31
JJN11_RS05035 NONE
JJN11_RS05040 1073836 .. 1073853 + -14.1   -4.7254   TAAGGCATAAAAAAA             GGCCCGC ATAA GCGGGCC              TTTTTCGTAAACCGT 100 31
        queA 1076335 .. 1076359 +  -7.8  -2.90496   AGGCTTTGAATGAAC          GTGTCGGGGA ATAAG TCCGCGGCAC          TGGTTTAACGCGCCG  59 12
         tgt 1077506 .. 1077520 +  -2.8   -2.7127   CGACAGGGTCGGGAT               GTTCCA CCT TTGAAC               GTTGATTAATTTATT  41 2
        yajC NONE
        secD NONE
        secF 1080765 .. 1080784 + -13.6  -5.85178   ATCGTGTTATCAAAA            TCCCGGTC TGTT GACCGGGA             TTTTTTTTGCCTGTT 100 51
JJN11_RS05080 NONE
JJN11_RS05085 1081947 .. 1081964 + -11.3  -5.02074   TGAAGCAATAAAAAA             GCCAGCT TTTA AGCTGGC              TTTTTTGCCGGGTGG 100 30
        nrdR NONE
        ribD NONE
        ribE NONE
        nusB 1086473 .. 1086511 + -10.3  -6.17669   AAAGTGATCCGCAAG  CCGGAGTGTCGTACTGCC TTTG GGTGGTGCGG-GCTCCGG   TTTTTTTATTTTCTT 100 34
        thiL 1087706 .. 1087723 +  -8.3  -3.72576   CGAGGCACCGATAAT             CGGTGCG GCTA CGCCCCG              TTTGCTCAGCACCCA  66 217
        thiI 1093413 .. 1093434 +  -5.9  -4.56597   CCGCCGCCATCACCA           GCG-ATGAGG CCA CTTCATACGC           TTTTTCGCGCCCAAC  75 150
JJN11_RS05160 1095466 .. 1095484 +   -16  -5.07107   CCGCGATTAAGAAAA             TGCCCGGC TAA GCCGGGCA             TTTTTTCAGGCTTTC 100 31
        bolA 1105689 .. 1105712 + -13.2  -4.41844   GCATAAAGATTACGT          CAAAGCGGCC TGCG GGCCGTTTTG           TTTTGTCCGGGTTTT 100 81
         tig 1107298 .. 1107319 + -11.5  -5.93809   AGTTTGAGCAAAAAA           CCCGTTGCC TTTC GGCGGCGGG            TTTTTTTTATCACAG 100 60
        clpP 1108164 .. 1108191 +   -12  -3.90112   GCCCACGACGCGGGT        GTGCCGCTATAC TATG GTAGGGCGGCAC         TTTGCTTACGAGCAG  91 42
        clpX 1109577 .. 1109605 + -14.7  -4.66163   TACAAGCAGTTAATC        AAAAAGGGGGGAT TTA ATCCCCCCTTTTA        TTTTTCCGTAAACAT 100 53
         lon 1112121 .. 1112150 +  -8.6  -5.72616   CGTCAATAAAAAAAA       GGTTGGTAAGCT ATTTCG GGCTTGCCAGCC        TTTTTTTGTATAGCT 100 58
        hupB 1112608 .. 1112627 +   -10  -5.72622   GTTGAAAAGTACAAG            GGCGCATC ATTT GATGTGCC             TTTTTTGTTTGTCCA 100 62
        ppiD 1114700 .. 1114715 + -11.8  -4.39571   ACTGCAATACCAAAA              GGCCGC TTTC GCGGCC               TTTTCCATTTCTGCA  93 72
JJN11_RS05245 1115218 .. 1115252 +  -6.5  -3.52652   GTAAAAATTTGCCAG     GATAAAGAGGTCGTA CCAGT TATGACCTCTGAATC     TTATAATTAACTACC  61 55
        fadM 1115732 .. 1115749 +  -8.4   -5.7946   ACCCGGCAGACCGCT             CCGGTC AGTTAA GACCGG              TTTTTTTCTTCAGAG 100 74
         cof 1119135 .. 1119152 + -11.3  -6.09196   AGACCCTTCCAGCAA             GCCAGAC AAAC GTCTGGC              TTTTTTTATTTTACC 100 43
JJN11_RS05275 NONE
JJN11_RS05280 NONE
JJN11_RS05285 1124408 .. 1124431 +  -8.1  -5.76949   GGTGCAAAAATGAAA          CGCACCCTG CACTGT CATGGTGCG           TTTTTTTTCGCCATC 100 81
        glnK NONE
        amtB 1126268 .. 1126295 +  -3.4  -4.82667   ATTGTGCTTTTGTAG       GCCGGGTAAGGC AAAGAC GCC--GCCCGGC        TTTTTCATATCATCC  69 85
JJN11_RS05305 1127952 .. 1127973 + -15.9  -3.08679   GCTTTAATGCTTCAT           GCCCCTCTC GTCT GAGAGGGGC            TATTCAATACCGCCA 100 34
         ffs 1128578 .. 1128591 +  -2.4  -2.58892   GCCCCCACCCATTTC               TGCT CTTCTC AGCA                TCGCTTCATATCCAT  39 40
JJN11_RS05320 NONE
JJN11_RS05325 1129365 .. 1129379 +    -7  -3.53444   GCGGCGAGCCGAGAT               CGAGCG TAT CGCGCG               TTTGCGCCAGCGTGG  64 90
JJN11_RS05335 1131050 .. 1131064 +  -3.5  -3.68757   CGCGCCCGCTAGTCC              CGCAGC CTGA GC-GCG               TTGTCTGATTTTGCG  53 3
JJN11_RS05340 1132213 .. 1132225 +  -4.8   -4.4648   GGCCGAACAGCTGGC                GCGT CGTTA ACGC                TTTTGTGATCGCCAT  67 16
JJN11_RS05345 1135424 .. 1135451 +  -9.9  -3.17571   ACTAAACTTAATCGC        TGATGCGGCCAC ACCGC GTGGCCGCA-CG        TTCACTTCGGAGGTT  70 36
JJN11_RS05350 1135870 .. 1135883 +  -6.7  -3.51232   GGCGTTAAGCGTGGC               TCTCG GGAT CGAGA                TTCGTTTCCGCCCAC  61 69
        ykgO 1138262 .. 1138280 +  -3.7  -4.08692   AAAGCTGATGCTGAA             GCGCGGC TTGTT GTCACGC             TTTTCGCGAACATTG  60 462
        acrR 1144854 .. 1144873 +  -7.8  -2.57132   CGCAGCCTGAGCCGC            TCCTGGCC TGAC GCCCAGGA             ATTATCCGGGAGCCA  57 15
        mscK 1148324 .. 1148378 + -15.1  -3.75629   CAACCCCGGCGTGAT GTGCCCCCTCGCTCTCGCCTTCTCCCT TTC AGGGAGAGGGC-AGGG-GGGAGGGCAA TTTCCCTTCAAAATC 100 27
JJN11_RS05410 1149478 .. 1149507 +  -7.2  -2.53392   GCAATAATCATCAGA       CTGGCTGTTGCAT TTCTT GTGCG-CAGCCAG       TAAATTCGACCGTTT  56 34
         apt 1150186 .. 1150210 + -16.5  -3.09492   TAATCCTCCCGCCCG          CAACCTCGCCC AAC GGGTGAGGTTG          TGTTAGCATTACCCC 100 38
        dnaX 1152192 .. 1152210 +    -6  -4.03586   ATTCGACCCATTTGA             TCGTGAGT CTG ACTTACGG             TTGTTATCTTTAACG  66 26
JJN11_RS05425 1152557 .. 1152570 +  -2.3  -2.64099   ATGCAGCTGCCACCG               GGCTT TAAG ATGCC                ATTCTGATGCAAACC  39 5
        recR 1153277 .. 1153288 +  -2.2  -3.25823   CCATTAAATGGCATT                GTTG AGGT CGAC                 TTAGTATGAAAGGAC  43 120
        htpG 1155342 .. 1155354 +  -3.3   -3.8917   ACTTTTGAGGGGATT                TTCGC AAT GCGTA                TTATTCTGCTTGGCG  55 199
         adk 1156011 .. 1156042 + -11.6  -3.70033   CACCACCACTTAACG      TGGTTCTCACCCGG GACC CCGGGTGAGAAAAA       TTCTCATTTTACCTT  85 44
        hemH NONE
JJN11_RS05450 1158503 .. 1158528 +  -9.7  -6.06723   CGGGGCGACGTCCAG         GCCTGCTAAGCG AAG CGCC-AGCAGGC         TTTTTTTTTACCCCA 100 69
        ushA 1163543 .. 1163570 +  -7.6  -5.52384   TTTTTTGGTTTTGTA        GGCCGGGTAAGCG CAG CGCC-ACCCGGCG        TTTTTTTAATCCCGA  95 113
        cueR 1168208 .. 1168230 +  -7.6  -4.36914   TTTGCAGTTGCGCTT           CGGCCTGC ACATCCC GCTGGCCG           TTTTGTACCAGCCCG  78 93
JJN11_RS05530 NONE
JJN11_RS05535 1179252 .. 1179276 +  -2.9  -3.53012   ATCCTGGTTAATATT         CAC-CTGCTA AATAAA TGGCAGTGTG          TTTAACAAGGAAAAA  49 166
JJN11_RS05540 1180623 .. 1180648 + -11.1  -2.68942   ACTGGAACGGTGTAG         GCCGGGTAAGCG CAG CGCC-ACCCGGC         GTTCTGTCAGCGGCT  72 209
        cysS 1186986 .. 1187013 +  -9.9  -5.00884   CATGGGATTATGTAG       GCCGGGTAAGGCG CAGC CGCC--ACCCGGC        TTTTTTAACGCCGCT 100 75
JJN11_RS05610 1192289 .. 1192310 +  -5.8  -4.13341   GCAGGCGGTATCATT           CAGCGCTA CGCCAA TAGCGCGG            TTTGATTTGCTGTCT  66 452
JJN11_RS05690 1199586 .. 1199599 +  -8.1  -2.77013   TCCGGCAGGCACATC               CCGCT TTCA AGCGG                CTTATTGCCGAACTC  54 448
JJN11_RS05715 1201257 .. 1201281 +  -5.6  -3.13042   AAACAAATCAAACGT          GGCTTTGCGT GTTTG GCGCATGGCC          TATCTGTCATTTTTT  52 111
JJN11_RS05720 1201878 .. 1201903 +  -7.6  -2.58249   ATCAAAAAAGCGAAA         GCCCTTGAAG CGGTCA CTTCAAAGGC          CTTCTCAACACTGTG  58 49
JJN11_RS05725 NONE
JJN11_RS05730 NONE
JJN11_RS05735 NONE
JJN11_RS05740 NONE
JJN11_RS05745 1206397 .. 1206412 + -10.4  -4.87786   GGACATAGAAGTAAG              GGCCTC TTCG GAGGCC               TTTTTCTCGCGTTGA 100 220
JJN11_RS05750 NONE
JJN11_RS05755 NONE
JJN11_RS05760 NONE
JJN11_RS05765 NONE
JJN11_RS05770 1208912 .. 1208932 +  -8.2  -4.84527   GAATTACACAAAATA            GCCTCGGT TAACC GCCGGGGC            TTTTTCGTATCTGAA  88 96
JJN11_RS05775 NONE
JJN11_RS05780 1209727 .. 1209770 +  -2.4  -3.53563   AAAGTAAAGTCACTG GTTGAGGA-GGAGAAGAAGTG AGC CAGATTATCCCCATCCTCAAC TTTGAGGAAGGCTAT  47 5
JJN11_RS05785 NONE
JJN11_RS05790 NONE
JJN11_RS05795 NONE
JJN11_RS05800 NONE
JJN11_RS05805 1211395 .. 1211412 + -10.5  -5.28176   TAGAGAAATAACGGA             GCCTCGC ATTA GCGGGGC              TTTTTTATACCTGCA 100 287
JJN11_RS05810 NONE
JJN11_RS05815 1212336 .. 1212353 +  -6.2  -3.22774   ATTAGCCATTCCAAA             GCGTCC TTCTCT GGGCGC              TTGCTAATGGATATC  55 36
JJN11_RS05820 NONE
JJN11_RS05825 NONE
JJN11_RS05830 NONE
JJN11_RS05835 NONE
JJN11_RS05840 NONE
JJN11_RS05845 1218171 .. 1218186 +  -8.2   -5.4833   AACAAGTAATTATAA              GGTCGC CACG GCGGCC               TTTTTTATTGCCTGA 100 32
JJN11_RS05850 NONE
JJN11_RS05855 NONE
JJN11_RS05860 NONE
JJN11_RS05865 NONE
JJN11_RS05870 NONE
JJN11_RS05875 NONE
JJN11_RS05880 NONE
JJN11_RS05885 NONE
JJN11_RS05890 1223208 .. 1223221 +  -9.5  -5.43553   GCCCAACCAAATAGA               CCCGC TCCG GCGGG                TTTTCTTTTTTAAGT 100 44
JJN11_RS05895 1224011 .. 1224026 +  -8.2   -3.2396   AACGGACATTCCAAA              GGGCGG CGTG CTGCCC               TTGATAATGATCGTT  64 39
JJN11_RS05900 1224801 .. 1224812 +  -4.4  -3.46106   TTGCGCCTGTGCTAT                TCCT GGGT AGGA                 TGTTTCCACTTTTAC  52 90
JJN11_RS05905 1225249 .. 1225262 +  -9.5  -5.67063   AATCGTGAATCCTAA               CCCGC TTCG GCGGG                TTTTTTTATGCTCGG 100 44
JJN11_RS05910 NONE
JJN11_RS05915 NONE
JJN11_RS05920 NONE
JJN11_RS05925 NONE
JJN11_RS05930 1232134 .. 1232147 +  -9.5  -5.60993   ATCACAATTATCTGA               CCCGC TTCG GCGGG                TTTTTTTATGCCCGG 100 47
JJN11_RS05935 NONE
JJN11_RS05940 1234922 .. 1234947 +  -5.3  -2.55668   ACACTTTAACTCCTG         GCGGGGGTATT GATA GGTGCCGCCGC          ATTGATCTGCAACTC  48 32
JJN11_RS05945 NONE
JJN11_RS05950 1235830 .. 1235847 +  -2.7  -4.18094   GCAACTACGTTAAAC             TAGCTCA AATA TGAGATA              TTTTGAGATAGTTTA  59 291
JJN11_RS05955 NONE
        yajD NONE
JJN11_RS05965 1238887 .. 1238902 +  -8.2  -3.04517   TTTTATAACAACGAA              GGCCCG GCGA CGGGTC               ATTTTGCGCGCACGT  63 421
JJN11_RS05970 1241109 .. 1241123 +    -5   -5.5112   GGTCTCTGTCGGCTA               CGAATT CTG AGTTCG               TTTTTTATTAGTGGG  85 16
JJN11_RS05975 1243220 .. 1243245 + -18.3  -3.78329   TTCGTGATCCTCTCC         CGCCGGGCAGC AACC GTTGCCCGGCG          TTTAACTTGCTCCCG 100 34
        pheP 1245015 .. 1245029 +  -4.2  -4.21933   CTGGCTTTCTTCACT               CTGCTG GGC CATCAG               TTCTTTTAACGTTGC  62 337
JJN11_RS05995 NONE
JJN11_RS06000 NONE
JJN11_RS06005 1249065 .. 1249092 +  -3.2   -3.9712   GCAGTCGCGCAGTAA        CACGTTGCCCGG TGCG CCGGGCAGCCCA         TTTATGGTAGCCTGC  58 26
JJN11_RS06010 1250493 .. 1250519 +  -6.4  -3.39449   CATATAGGGCTTGAG         CAGCTTCGCCTG AAT CAGCCGCTGCTG         TTCCTGTTCGTCGAG  56 404
JJN11_RS06025 1253913 .. 1253925 +  -3.3  -3.74747   AGGTAAATCACGAAA                GGCAA AAT TAGCC                TTTAATGCAAATTGC  53 102
JJN11_RS06030 NONE
JJN11_RS06035 1254706 .. 1254718 +  -4.8  -4.32857   CCGGCACGACCACCA                GGCT GGTGA AGCC                TTTCTCTTTCAGACC  67 160
JJN11_RS06055 NONE
JJN11_RS06060 1258208 .. 1258222 +  -3.6  -2.53263   CTAACGGGTGTCTCA               TGATTA TGT TAATCG               TCAGTTAAAAATAAC  42 276
JJN11_RS06070 1261493 .. 1261541 +  -3.1  -3.56837   TTGCACCAGAGAAAT GAGCGAGCCGCCGT-CG-GCG ATAAAGTCC CGCATGCGCTGCGCCTCGCTC TTATCCTGTTTCAGG  49 114
JJN11_RS06085 1263521 .. 1263535 +  -4.2  -3.59979   TGAAAGACATAGTCT               GCGCAG GCG TTGTGC               TTTACACTGCGCGCG  52 49
JJN11_RS06090 NONE
JJN11_RS06095 1265030 .. 1265067 +  -3.2  -5.04377   GCATAACAGTGAGTC   TACCGCAGGCGCCCCT CTGAAA AGGGGCCCCTGCACCG    TTTATTTTCTTTTGC  75 35
JJN11_RS06100 1265867 .. 1265892 +  -9.8  -2.80994   CCACCGTTAAACAGG         TCA-GCCCACC TCTTT GGTGGGCATGA         TATCGTCCGGTTACC  68 105
JJN11_RS06105 1266916 .. 1266957 + -10.4  -3.61398   ATGTTTCCATCAACC GGGGCTACCACTCCAAA CCCAGACAA TTTGGA-TGGTAGCCTC TTCTTAGCAAGGAGG  77 313
JJN11_RS06110 1267180 .. 1267210 + -24.8  -5.27335   AGGCACCCGTTTTTT       TGCCCCGTCTGGCG TAT CGCCAGGCGGGGCA       TTTTTATTTGAACAG 100 88
JJN11_RS06115 1268743 .. 1268758 +  -3.2  -5.42259   ACATAAAATTTGAAA              GAGAGT GAAT ACTCCC               TTTTTTTACGACTGC  81 59
JJN11_RS06120 1270266 .. 1270316 +  -2.3  -4.18762   AACGTTAAGCAAGGC CAGCGGATTGATGTATGGCTAAG AGAAA CGAAGCCAGTCAACCAACCGCTG TTTTCCGTCCGCATT  57 39
JJN11_RS06125 1271902 .. 1271924 +  -2.7  -3.72139   TGATCACCCACTATC           GTGCTGCTT ATAAA AAGTAACAC           CTTTTTTAAATTTAA  51 6
JJN11_RS06130 NONE
JJN11_RS06135 1274361 .. 1274378 + -11.3  -2.81256   ATAGCCCCCCTGAAA             CCACCTC CTGG GAGGTGG              TGATTGATCCTGTAT  74 81
JJN11_RS06140 NONE
JJN11_RS06145 1277276 .. 1277289 +  -8.1  -5.86976   AATTAAGATGAAAAG               CACGC TTCG GCGTG                TTTTTTATTTTATGG 100 100
        pgaA 1279973 .. 1279985 +  -4.1  -4.08692   TGCCCTCGCATTTGA                TCTGA ATG TCAGG                TTTTAAGGGCGCTTC  60 7
        pgaB NONE
        pgaC NONE
        pgaD 1283792 .. 1283822 + -21.2  -4.56597   AGTAACGAAAAACCG       TGCCCCGTCTGGCG TAT CACCAGACGGGGCA       TTTTTACCGCCGCAC 100 36
JJN11_RS06190 1290159 .. 1290177 +  -4.4  -3.25823   CGAGGTGCCGCCCAG             CACCACCG CGG CGATGGCG             TTCATCTCAAAGGCG  49 368
JJN11_RS06250 1301399 .. 1301429 +  -2.5  -2.65504   CGGTCTGAGCCGGGT      GTCGACAGGTGTCG AAAA CGACACTTC-CGCC       CGTTTTTCGTCAAAA  39 33
JJN11_RS06255 NONE
        hycC NONE
JJN11_RS06265 NONE
        hycE NONE
JJN11_RS06275 NONE
        nuoB NONE
JJN11_RS06285 NONE
        hycI 1308788 .. 1308810 +  -3.4  -4.37886   TAGCGCCTTACCGGG           CCTACGTT TATTGAT AGCGTGGG           TTTTGTAGGCCGTGC  63 85
JJN11_RS06295 1309450 .. 1309475 +  -9.1  -3.66018   GGACTATTGTTGAAA         TGTCCGCTT-TG TGC CAGAAGCGGACG         TTGTTAAGCTCATGC  74 46
JJN11_RS06305 NONE
JJN11_RS06310 1311944 .. 1311961 +  -5.5   -3.9712   TCTGGCCGCGCTGGC             GTGGCGG CTCT CTGTCAC              TTTGTAATGAGATAC  64 1
        arsC 1312426 .. 1312456 +   -14   -3.1647   CCCACTTCAAAATAT       CGGACGCCTGTTTA CGC TATGCGGGCGTCCG       CTTTTCGCTCTTAGC  90 45
JJN11_RS06325 1314356 .. 1314370 +  -4.3  -3.10715   GCGACATAGCCGAGC               TCATC ACTAA GATGA               TTAGATAATGATGAA  48 3
         hcp NONE
        hydN 1315767 .. 1315777 +  -5.4  -4.90471   CTGTCTCTTCCATGA                 TGCT GTA AGCA                 TTTTCTCTTTTCACT  78 18
        fdhF NONE
        hypF 1320165 .. 1320175 +  -2.4  -4.92385   GGGCAGGCAGTGATT                 GCCG CCG CGAC                 TTTTCTTTGAATCTG  70 5
JJN11_RS06350 1321284 .. 1321298 +  -5.8  -3.81408   CCGCCATTTATCCCT               CTTATT TTC AATAAG               TTAATTTTAGTTTTC  64 90
        fdhF 1323594 .. 1323615 +  -6.5  -3.19936   GGTGGAACATGTGGC           GGTGGAGGG GGTT CCGTTCACC            TTGCGTTCGCTGCTT  57 102
JJN11_RS06360 1326565 .. 1326581 +  -3.5  -4.63218   GGGAATAAGCTGAGG              GCACCGC GAA GCGGCGA              TTTTCTTGCCGGGAG  66 295
         fes NONE
JJN11_RS06375 NONE
        entF 1334670 .. 1334681 +  -7.2  -5.40474   CGGGTAAGGCGTAGC                CGCC ACCC GGCG                 TTTTTTTACCGCCGT  93 169
        entS 1339192 .. 1339203 +  -2.2  -4.08767   CCTTCGCCGTTCAGA                CC-GG CGG CCAGG                TTTTCACCCCCTAAC  56 399
        entC NONE
        entE NONE
JJN11_RS06420 NONE
        entA NONE
        entH 1344968 .. 1345005 + -12.7  -3.06679   GGGTAGAGCGTGCGG   CTGTGTGCCGGGTG-GCG CTG CGCTTACCCGGCCTACGG   TTCGATGCGGCTGTT  83 35
        cstA 1347331 .. 1347367 +  -7.2  -5.24129   AGGGGCGCATTAACC   TGTGTGCCGGGT-GGCG CTAG CGCTTACCCGGCCTACC    TTTTTTGTGAGAGAA  91 28
JJN11_RS06440 1347620 .. 1347645 +  -3.1  -4.09864   GGCTGATCTGCTCCT         GCTTACAGCCA TAAA TGGCCGCCAGC          TTTTCGCGGGTGCGT  58 60
JJN11_RS06465 NONE
JJN11_RS06470 NONE
JJN11_RS06475 1354158 .. 1354175 +  -2.5  -3.48772   CCGGTAAGCGCAGCG             CCACCGG GCAA CAGGAGG              TTGTGTGACCGCATT  47 89
JJN11_RS06480 1355766 .. 1355778 +  -4.7    -2.981   CCCGGCACGCTGAGC                GCCGC ATC GCGGG                ATTTCTCCGTTGCCA  46 370
        mtnA 1358204 .. 1358216 +  -4.7  -3.92577   TTCATTGAGAAACTT                CGCCC GCA GGGCC                TCTTTTTGCGGGTTA  59 383
JJN11_RS06510 1361087 .. 1361116 + -10.3  -4.80453   ATCAGTGGGTTCTAA       TACGCAGA-ATTAT AAA ATAATTTCTGCGTA       TTTATTTTGTAATAG 100 55
        ahpC 1363568 .. 1363585 + -12.7  -3.90112   CCACCCGGCATTCAA             TGGGCGC ATCC GCGCCCA              TTTCATTCCAGCACC  93 234
        ahpF 1365269 .. 1365290 + -14.5  -5.71712   CACCTGCACTGTAAA           GAGGCTACC CTGG GGTAGCCTC            TTTTTTTATCTCACG 100 54
JJN11_RS06535 1367183 .. 1367202 + -12.2  -2.52676   GCGGAAGGCCGGAAA            GAGGATGC CCGG GCATCCTC             TGGGTTAAGCGCGTA  78 43
JJN11_RS06545 1368860 .. 1368896 +  -6.3  -4.17023   GTCGGCCCCCAGCTT    CTGGCGACGGCGGCGTC AAA GGCGCTGCGGGTGACGG    TTTTGCCGTAGTTGG  69 220
        pagP 1372313 .. 1372326 +  -2.3  -4.63218   GCAGGAAAAATTAAC               GCGAC TTTT GTCAC                TTTTCTTCAAAAAGC  63 106
        cspE 1372661 .. 1372677 + -13.7  -5.79588   GCAAGAATTTCAAAA              CCCGCTC ACC GAGCGGG              TTTTTTTCGTTTTCA 100 54
JJN11_RS06575 1374179 .. 1374194 +  -3.2  -3.40597   AGGTCGGGTTTTTAA              GGC-GCG AAA TGCAGCC              TGTTTACGTCAAGAA  48 113
        tatE 1374453 .. 1374468 +  -7.5  -5.64274   GTTTGATAAAAAAAA              CCGGC CTGTAA GCCGG               TTTTTTTATGGGTGA 100 58
JJN11_RS06655 1390197 .. 1390227 + -25.6  -4.16921   GAACCCTGAGGTAAA       CGCAACGATGCGCG AGG CGCGCATCGTTGCG       TTTTGGCACTTATTG 100 32
        ubiF 1405781 .. 1405796 + -10.4  -5.72616   GTAGAAAAGCAAAAA              GCTCGC CGAA GCGAGC               TTTTTTTATGTGGCT 100 97
        nagE 1414983 .. 1415004 + -18.7  -5.75342   AGCGTTAGTGCCTGA           GCGGCGGGG ATAT CCCCGCCGC            TTTTTTTTGCAGCAA 100 54
        glnS 1416821 .. 1416837 + -11.5  -5.75342   TCATTTTCTGATAAA              CGCCGCG CAT TGCGGCG              TTTTTTTTGCCAGAC 100 45
        chiP 1418643 .. 1418680 +  -7.6  -2.66316   TCACCATCTTCTGAT   GACT-CACCCGGCGGGG GATAA CCCCGCCGACTGGAGAC   TGCTATGCTGAAAAA  58 27
        chiQ 1419082 .. 1419108 +  -5.1  -4.78149   TGAAATCACCCGTAG        GCCCGTGTAAGCG CAG CGCC-AC-CGGGC        TTTTTACATTATGAC  75 90
        seqA NONE
         pgm 1424238 .. 1424264 + -10.1  -5.26316   GCTTCGATTTTGTAG        GCCCGGTAAGCG CGAG CGCC-ACCGGGC         TTTTTTGTCAGCTCA 100 88
JJN11_RS06850 1429205 .. 1429221 +  -2.2  -3.78597   TCATTACCGCATAAA              CCGATA ACCGA TACCGG              TTTCCGTTAATAAAT  50 48
JJN11_RS06885 1437517 .. 1437536 + -13.6  -5.60993   TGCAGTAACAAAAAA            CCGCCACA GCAA TGTGGCGG             TTTTTTTATCCCCCG 100 61
        phrB NONE
JJN11_RS06895 NONE
        pxpB 1440473 .. 1440489 +  -3.6  -3.08073   CACCGTGCGGTTTAT              CCCGCT GAAGG AGGGGG              TATGTTAAAAATCAT  45 1
JJN11_RS06905 NONE
        pxpA NONE
JJN11_RS06915 NONE
JJN11_RS06920 NONE
         pcp NONE
         nei 1445348 .. 1445374 + -12.3  -3.57457   GCCAGATGTAAAAAA        GCCGGGTG-GCG CTTG CGCATACCCGGC         TTAGTTCGTTTTTAC  86 30
        sdhC NONE
        sdhD NONE
        sdhA NONE
        sdhB 1450887 .. 1450915 +  -5.9  -3.85698   GCTCGCAGGTGAACC        CCGGCACGTACAC GTG GTGTGCGTGGTAG        TTTCTACGGCGAAAG  64 317
        sucA NONE
        odhB 1454996 .. 1455007 +  -2.2  -4.60487   CCGACCCGTCTGCTG                CTGG ACGT CTAG                 TTTTTCGCGGTACTG  63 14
        sucC NONE
        sucD 1457191 .. 1457208 + -11.3  -5.75342   CGTTTCGACATGGTT             GGCCATC GCAA GATGGCC              TTTTTTTTGCGCGAC 100 86
        cydA 1459551 .. 1459561 +    -4  -2.60257   ACGGTAAGACAGGAG                 TCAT CAA ATGA                 TCGATTATGAAGTAT  44 34
        cydB NONE
        cydX NONE
        ybgE 1461127 .. 1461156 +  -2.1  -3.94989   AAGAACTATCCGTTA       ATATTATGGGCTT ACCC GGGCCCATAAAAA        TTTACTCTCTGTTTA  52 43
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA 1464173 .. 1464191 +  -2.4  -2.59883   CTAAAGTTGGCAAAA             CAGTCT ACGTTTG AGGCTG             TGGATTGGTAGTTTT  39 52
        tolB NONE
         pal 1466128 .. 1466139 +  -2.2  -2.52896   GGTTTACTAAGAGAA                TTGC ATGA GCAG                 TAACTTCAGACATCA  39 31
        cpoB 1466916 .. 1466957 + -14.6  -2.78018   CTGCGATGGGATGAT TGCCGCATGACCAGAAAT CGCTTT ATTTCTGGTCTTGCCGCA  TAATTCGTAAGCAGT  90 27
JJN11_RS07035 1467257 .. 1467268 +    -3  -2.62616   ACGACCCACCACTAA                CTTA GTAG TAAG                 TAGTATCCAGCGTAG  41 130
JJN11_RS07040 NONE
JJN11_RS07045 NONE
JJN11_RS07050 NONE
JJN11_RS07055 1467871 .. 1467901 + -16.3  -3.19509   GCACGACCCACCAAT       GTAAAAAGGCGCC CTAAA GGCGCCTTTTTGC       TATCTGTTATTCCAG 100 128
        nadA NONE
        pnuC 1470134 .. 1470157 +  -3.7  -3.19246   GTACATGATGCACAT          CGCGCACTT CAGGAA GGGAGCGCG           TTAAGTTGCGCTTCA  47 255
        aroG 1472879 .. 1472899 +   -14   -5.5604   CATTCAGAACGCAGA            GCCCGGTC ATCGC GACCGGGC            TTTTTTATTACTTGG 100 64
JJN11_RS07120 1480953 .. 1480971 + -13.8  -4.35518   AATTCCCTTTAAAAA             CGCCCGGT TCC GCCGGGCG             TTTTGCTCTCAAGTT 100 39
        modA NONE
        modB NONE
        modC 1483946 .. 1483966 +  -8.3  -2.94218   CTGCTCAACCTGTGT            GGCAAAGTC GTT GAGTTTGCC            TGTGTCCTCACCGGT  56 329
         pgl 1485630 .. 1485645 + -10.4  -5.60993   GATGAAATAAAAAAA              CCTCGC GAAT GCGAGG               TTTTTTTATGCCCGG 100 45
        tisB 1486152 .. 1486188 + -16.7  -2.69951   CTGACGTGTTCAGCC    GCAGCAAAAAGGGGGAG TTG CTCCCCCTTTTTGCTAA    ATATTTACTGCTTCG 100 37
JJN11_RS07160 NONE
JJN11_RS07165 1490467 .. 1490484 +  -9.1  -3.94853   AGATAATTACTGCGA             GGGAGCT TCAA GGCTCCC              TTTAATATTGAATTA  76 35
JJN11_RS07170 1491205 .. 1491239 +  -9.5  -5.05601   ATGTTTTACTAGTTA    TAAAAAGGCAAACAGG GCAT CC-GTTTGCCTTTCTA     TTTTTCTATATCGTG 100 55
        hutI NONE
        hutG NONE
JJN11_RS07200 1496573 .. 1496586 +  -5.3  -3.14309   CCGCTCTTGTGTGCA               CTTGT CTAT ACAAG                TATATCTTACTGTAT  52 96
        hutU NONE
        hutH 1499954 .. 1499970 +  -2.9  -5.28176   GGCCTACGGTTTTGT              GCGGTTT CCG GGACTGC              TTTTTTATGAATACA  77 146
        bioB NONE
        bioF NONE
        bioC NONE
        bioD 1505525 .. 1505541 +  -9.3  -3.53444   CATCCAGCTCGCTGA              CGCGGCC CTG GGCCACG              TTTCGCCCGCGGTAA  69 47
        uvrB 1509230 .. 1509247 +  -8.3  -2.52464   TTGCGGCCAGCGAAA             GCCCGGC GGCG GCCGGAC              TGAGTTCGCGACCCA  53 327
        moaA NONE
        moaB NONE
        moaC NONE
        moaD NONE
        moaE NONE
JJN11_RS07285 1513777 .. 1513787 +  -4.6  -3.14564   GCGCTGTGCTTGCCG                 GGCC TAC GGTC                 TTCCTGGCCGGGTAA  50 56
JJN11_RS07305 1517651 .. 1517664 +  -2.3  -2.78384   AAAGAGCAGAAGCGA               TCCGG CAAA CGGGA                TGTGATAGGCCCAGA  39 341
        rhlE 1524676 .. 1524695 +  -8.5  -5.07652   CGCAGTAATCTGGAA            GCCCGGT CGTAAA GCCGGGC             TTTTCTTTTGCGGCC  93 33
        dinG 1527245 .. 1527262 +  -5.5  -2.76492   CAAAATTTTTCCACA             CGCCG ACATCCCC CGGCG              CTTTAAAATCACTGG  47 329
        ybiB 1533932 .. 1533947 +    -4  -3.60048   ACGTTGTTCCGTCGA              TGTGAT AAGT ATCACG               CTTTTTTGCGAGAGA  52 447
        rlmF 1539547 .. 1539562 +  -5.4  -3.58159   CAGCAGCTCATCCAC              CGCCGCT TTC AGCG-CG              TCTTTCGCTTTTTCG  55 330
        ompX 1546794 .. 1546823 + -10.1  -4.98857   ACTTCGGTGAGCCAA       TATAAAAACCCGC TTCG GCGGGTTTTTTTG        TTTTTGTCCTTCCCT 100 43
        mntR NONE
JJN11_RS07455 1550847 .. 1550903 +  -9.6  -2.58822   GCAAATGTATAGCAA CGTCCTAACT-TTAGTGAGCGGTATAA ATGG TGATACCGCTCACTAACAGGATGGATG CTGTTCTATGGCCGA  66 65
JJN11_RS07460 NONE
JJN11_RS07465 NONE
JJN11_RS07470 1555208 .. 1555226 + -13.1  -4.18018   ACGTGAACGGGAAAA             GGGGGCC ACCGC GGCCCCC             TTTTCAATCCCCGCG 100 134
JJN11_RS07480 1558523 .. 1558546 + -14.6  -2.92171   TAATCACCCGTTTCT          GACCCTTCCC GTCC GGGGAGGGTC           TGCTTTCCCCCTGTC  91 38
         fsa 1565475 .. 1565488 +  -3.1  -4.85599   CTAACGCTTGCCCGG               CCTACG GTT CG-AGG               TTTTTGTAGGCTGGG  71 59
        iaaA NONE
        gsiA NONE
        gsiB NONE
        gsiC NONE
        gsiD 1574223 .. 1574246 +    -6  -4.27316   CCTGCCAGTGTTCGG          TCATCTGCTG ATTG TAGCGGGTGA           TTTTCGCTTCCAGCC  72 267
JJN11_RS07555 1576400 .. 1576412 +  -2.7  -6.11229   GCCGCAGCCATCGCT                TTGGT GGA ATCAA                TTTTTTTGTTTTGCT 100 222
JJN11_RS07570 1580207 .. 1580217 +  -3.2  -3.24708   CTTTTTCTGGCACGT                 GGGT TGC ACTC                 TCTGTTTAGCACATC  46 73
JJN11_RS07575 NONE
JJN11_RS07580 1581157 .. 1581170 +  -4.5  -2.78018   ATCGCAAGCAGTTAT               TAGCG GAAA CGCTG                TAATTCATGAGGACT  47 9
JJN11_RS07585 NONE
JJN11_RS07590 NONE
JJN11_RS07595 NONE
JJN11_RS07600 1584904 .. 1584920 + -13.7    -3.322   AATCACAATAAAAAA              GGGGACG TGA CGTCCCC              TTAATCTATGCAGCT  91 39
        bssR 1586998 .. 1587015 +  -2.6  -2.66748   TGTAAAAGTGATAAT             GCCCCT GCGCTG AGTGGC              TACCTTTAAGTCATA  41 78
JJN11_RS07615 1588385 .. 1588404 +  -6.4  -3.14564   TGGCGAACAGGGATT            CGCAGC TCTCTTTT GCTGCG             TTAATCGCCGCATAG  52 242
        dacC 1590271 .. 1590289 + -14.6  -4.16943   TAGTTGAAAGCAAAA             CGGCAACC ACA GGTTGCCG             TTTTAGCGTCTGGCG 100 38
JJN11_RS07645 1598508 .. 1598519 +  -7.2  -4.72272   GCCGCAGAGGATCAC                CCGG CAAC CCGG                 TTTTTCCTGCAGGGC  84 475
JJN11_RS07665 1601734 .. 1601750 + -13.7  -3.05597   TTACAACCGGATTAA              GCGGGCA TGG TGCCCGC              ATTTTGCCGGGTGGC  86 26
JJN11_RS07680 NONE
JJN11_RS07685 1605512 .. 1605524 +  -3.3  -2.98582   ACGCTTTGTAAACCA                GCCTG CGG CAAGC                GTTTCTACCTCTTCT  45 173
JJN11_RS07690 NONE
         fni NONE
        crtY NONE
JJN11_RS07705 NONE
JJN11_RS07710 1611104 .. 1611129 +  -2.5  -4.82901   GCCGCGCGACGCGCC         TTGC-GCTGGCG TAA CGTCGCCTGCAA         TTTTTCTACCGGCGG  70 40
JJN11_RS07725 1614305 .. 1614319 +  -2.7  -5.03314   GCGGTACGGTTTCAA               CCGGC TTACC GACGG               TTTTTTCCAGATCGG  77 143
        nfsA 1615394 .. 1615416 + -14.2  -4.10161   ATTCATCCTGCGCCT           GCCTGCGTGT ATG ATACGCAGGC           TTTTACCAGATCATG 100 45
        rimK 1616367 .. 1616384 +  -6.3  -4.34482   GGCCTGCCGCGCCGT             GTGGCCTG GGC CAGGC-AC             TATTTTTTTGAAGGG  74 43
JJN11_RS07745 1616921 .. 1616937 +  -3.6  -4.92783   CAGTCGCTGTTGTGG              CGGCTG CATAA CACCCG              TTTTTCTGCTGACTT  73 59
        potF 1618404 .. 1618419 +    -9  -4.45544   ACAGGCGCACCGTTC              TGGTGC GCCT GCACCA               TTTTGATTGATGCCG  83 80
        potG NONE
        potH NONE
        potI 1621414 .. 1621435 + -15.9  -2.83403   AAGAAGCGAAATTAA           GATGCCGCG TTAT CGCGGCATC            GTTTCATGGAAGACA 100 58
JJN11_RS07770 1621940 .. 1621954 +  -2.1  -3.13784   AATAACGTGTATAAT              CG-CTG CCCC CAGACG               TATTAAGGTTTCGTT  43 36
        rlmC 1623158 .. 1623177 +  -3.4  -3.02263   AGGCCGGGTAAGGCG            TAGCCGCC ACCC GGCGACAA             TCTTAAACAAAATGT  45 86
JJN11_RS07780 1623930 .. 1623942 +  -6.2  -2.78935   AAAGGCTATCTGTTT                GCGG AACGC CCGC                TATGATCCGCCGTCT  52 8
JJN11_RS07785 1625814 .. 1625829 +  -2.5  -4.27584   ATCGCATTCTGGTAG              CTGTC ATAGGC GACGG               TTTTCACTTCCGGGT  62 441
JJN11_RS07820 NONE
JJN11_RS07825 1631553 .. 1631564 +  -5.8  -3.91897   TGCGACGTTTCTGAC                GCAG TGGG CTGC                 TTTATCCATAAAAAA  64 235
JJN11_RS07830 1632236 .. 1632261 +  -8.3  -5.44119   TAACCATTACGAATA         TCTCCATGGGT TAAC GCCTGTGGAGA          TTTTTTTCGCATCGA 100 41
        gspC NONE
        gspD 1637539 .. 1637552 +  -5.9  -4.40561   CTGCTGGAGATGCGC               CGGGT GCTG GCCCG                TTCTTTTTACGCCGG  72 160
        gspF NONE
        gspG NONE
        gspH NONE
        gspI NONE
        gspJ NONE
        gspK NONE
        gspL NONE
JJN11_RS07895 NONE
JJN11_RS07900 1645701 .. 1645719 +  -3.9  -5.09426   ATGTTGGTTTTATTT             CATGTTT AAGGA AGACATG             TTTTTTAAAGTTCAC  77 216
JJN11_RS07905 1648462 .. 1648477 +  -3.2  -3.53811   ATCGTCCTTCTCTGA              GATGGC GGGC GCGATC               TTTGCCCGCCATCAA  50 40
        iagB 1649045 .. 1649082 +  -2.9   -3.4382   GAAAAGGTTGCTGTC   CCGGATTTATTTATTAA AGGG TTAATACATAAATCGAG    TTCGTATTGCTTATT  47 83
JJN11_RS07915 1650973 .. 1650992 + -13.6  -5.71712   GCTTTAATAGCAAAA            CGGCAACC TCAG GGTTGCCG             TTTTTTTCTCTGCCG 100 34
JJN11_RS07940 1656998 .. 1657009 +  -7.2  -5.00616   GCCCGGCAAGCGTAG                CGCC ACCG GGCG                 TTTTTTCAGGCCAGC  85 108
JJN11_RS07965 1663636 .. 1663654 +  -2.2  -5.14965   CCAGCAGGGTAAACC             GGCGGCGG TAC TCGGCGCG             TTTTTTGCTGGCGAT  77 78
        macA NONE
        macB 1667857 .. 1667877 + -11.1  -4.18197   GCCCACAAATAAAAA            TGCCAGCGC GTC GGGCTGGCA            TTTTGAGTGCGGGGT  87 134
        clpS NONE
        clpA 1671110 .. 1671125 + -11.8  -6.04378   ATGTGATGATAAAAA              CCGGGC AAAT GCCCGG               TTTTTTTTATGGTTT 100 48
JJN11_RS08000 1672259 .. 1672276 + -14.1  -4.64159   CGGGGCATAAAAAAA             GGCCGGG ATAA CCCGGCC              TTTATTATTCTTTGT 100 47
         lrp 1679245 .. 1679273 + -19.7  -2.64803   TGGTAATCCATACAG        CAACAGTGTCGGG CTC CCCGGCACTGTTG        TCCGTTTAGCACTCA 100 82
        ftsK 1683163 .. 1683179 +  -4.3  -3.64822   ACGGCAACCGTGAAG              TGCTGGC CCC GCCACCG              TTTGAATAACGGCCT  55 0
        lolA 1683937 .. 1683958 +  -2.3  -3.37634   AATAAGTAAGAGGCG           TGAGTGAGCA ACC TG-TCGCTCG           ATTTTTCAGATAATG  45 32
        rarA 1685319 .. 1685341 + -12.8  -4.10188   TGGCAATTGTATCCT           TGTGACCGCA GGC TGTGGTCACA           TTTCCTATTTTAATT 100 61
        serS 1686687 .. 1686700 +  -9.5  -5.60993   GTTTTTAAGTAAAAA               GCGCC TGCG GGCGC                TTTTTTTATGCCCCG 100 44
        dmsA NONE
        dmsB NONE
JJN11_RS08070 1690836 .. 1690853 +  -7.7  -6.09196   TTTTGTTATATAAAG             CCGGGACA TAG TG-CCCGG             TTTTTTTATTTTCGA 100 48
JJN11_RS08075 1692247 .. 1692263 + -12.3  -5.59879   CCTGAACAAATAAAA              GCCTGTC GAT GACAGGC              TTTTTTGTCTTTGTC 100 36
JJN11_RS08080 1692888 .. 1692907 +   -15   -4.3129   GACTAATAAATAGAA            CGCCCGGT AAAA ACCGGGCG             TTTTGCTAATACATG 100 35
JJN11_RS08105 1700041 .. 1700059 +  -3.1  -4.36914   GGCCAAACGCATCCC             CTGACAG CAATT TTGTCGG             TTTTGTGACAGCCCG  62 22
        serC 1701313 .. 1701333 + -14.7  -5.29716   CACGCCCCTGTTCAC            CCCCGTAGC CTC GCTGCGGGG            TTTTTATTATGTTGA 100 42
        aroA 1702658 .. 1702679 + -15.9  -3.93369   TGCATGATATCGCGA           CGCCGCATC ACCT GATGCGGCG            TTTCCTTACGCTTCC 100 34
         cmk 1703539 .. 1703563 +  -8.6  -2.87132   CGATTTAGCAGTACC         CCCGCTG-CAA TGGA TTGACGGCGGG          TATGTGAAACAACCC  62 48
        rpsA 1705358 .. 1705375 + -14.1  -3.97051   GTAATCAATAACAAA             GGGCGGC TACG GCCGCCC              TTGTTTAAGCTGTTT 100 82
        ihfB 1705740 .. 1705769 + -14.5   -5.1286   AAAACTGAGTGACCA       CAAGAAAAGCACC TGCG GGTGCTTTTTTTG        TTTTTCTCCTTTTTA 100 56
JJN11_RS08135 NONE
        msbA 1709965 .. 1709976 +  -5.8  -2.71268   ATAAAATGCAGTTTG                GCGA ATGA TCGC                 TCGTATCTGGTCCGG  51 18
        lpxK NONE
JJN11_RS08150 1712229 .. 1712243 +    -5  -2.82895   TCTGAAAAAGGAATA               TGGTAA ACT TTACCG               ATTATTGATACGGAG  47 36
        ycaR NONE
        kdsB 1713199 .. 1713216 + -11.3  -5.72616   CGCTAATCCCCGTCA             TCCCCTC TTTT GAGGGGA              TTTTTTTGTCTCAAT 100 35
JJN11_RS08165 1714593 .. 1714620 +  -9.2  -2.71712   TGCTTTGTGCTGCCG        CCCCGGT-GAAGA TCA TCTTCGACCCGGG        ATTTGCCAGCCACAG  61 397
        cmoM NONE
        mukF NONE
        mukE NONE
        mukB 1722360 .. 1722377 + -14.1  -5.87996   CTGAAAATTAGCGAT             GGCGGCC CCCG GGCCGCC              TTTTTTTATTCCTTG 100 46
        ldtD 1724389 .. 1724413 + -12.2  -3.48506   AAGTGGGAAAATAAA         CGGGGTCTTGC GGTT GCAAG-CCCCG          TCTTTCCTGGGTTGT  86 71
JJN11_RS08200 NONE
JJN11_RS08205 1725751 .. 1725767 + -12.3  -5.26875   ATCACAATTAAAAAA              GCCTGCT TTA AGCAGGC              TTTTTTAATTGCCCG 100 40
        pepN 1735049 .. 1735063 + -11.4  -4.04206   GATCAGCGCTCTGGC               CAGCGC CAC GCGCTG               TTTCTGTCCCCCTGA  85 524
        pyrD 1740236 .. 1740265 + -10.1  -4.66537   TTTTAGCATGACTGA       CAACCAGGGCT TTATTTCC AGCTCTGGTTG        TTTTATATTCCCGGA 100 43
        zapC 1740901 .. 1740917 +  -7.9   -3.5764   GCAACCGGTCAGCTT              CAGCCTG GAA CAGGCCG              TTTAAGCCTCGAGTT  66 4
       rlmKL NONE
JJN11_RS08280 NONE
        pqiA NONE
        pqiB NONE
        pqiC 1749651 .. 1749679 + -13.2  -6.02546   AATTCATCGCACGGA        GCCGCACTTAGC TTGAT GCTAATTGCGGC        TTTTTTTTCGTTTGC 100 45
         rmf 1750078 .. 1750094 + -13.7  -3.75418   CTTTAAAAAAAGAAA              CCTCCGC ACT GCGGAGG              TTTCGCCTTTATATG  93 49
        matP 1753146 .. 1753163 +  -9.8  -5.24129   TCAGGCAATAAAAAA             CCCCGC AACATG GCGGGG              TTTTTTGTCAGACGA 100 54
JJN11_RS08330 1756316 .. 1756326 +  -8.2  -3.31144   CCACAGAAGCCAGCT                 CCGC GTC GCGG                 TTATAGGCGTCACGC  59 392
        helD 1761029 .. 1761064 +  -6.8  -3.65046   TCAGCATGGCATTCA    CCTGCAGCCCGGTCTCA CGA TG-GATCAGGTTGCCGG    TTGTTCCGGTGGCCG  63 346
JJN11_RS08360 1762540 .. 1762563 + -13.2   -4.4959   CGAAGTAATAAAAAA          CCCGGTCAGCC GTG GGCT-ACCGGG          TTTTCATTAGTTACG 100 33
JJN11_RS08375 NONE
JJN11_RS08380 NONE
        yccX 1766388 .. 1766405 + -14.1  -2.82742   TTACCAAAAAAGAAA             GCCCCGC ATAA GCGGGGC              TGGTTATAGAGCACT  88 400
JJN11_RS08400 1769094 .. 1769104 +  -2.4   -3.6217   GGCACGCTTTACAGG                 GCGC AAG GAGC                 TGTTTATAGTTCGCC  50 138
JJN11_RS08405 1769226 .. 1769249 + -13.2  -5.86976   GCCAGATTAGATAAG          CCCTGCGATA GCAA TATCGCGGGG           TTTTTTCTTTTGTCG 100 37
        betT 1771449 .. 1771468 + -13.6  -5.24129   TCGTTAACATCATTA            TGCCGCCT CCTC AGGCGGCA             TTTTTTATGCCCAAC 100 34
JJN11_RS08415 NONE
JJN11_RS08420 1774175 .. 1774190 + -11.8  -5.10767   CAATGTCATCATAAT              GGGGCC TGTG GGCCCC               TTTTTATATTCACTG 100 53
JJN11_RS08430 1775375 .. 1775398 + -15.4  -5.50313   CGCCAAATTTAAAAA          CCCTGCGATA GCAA TATCGCAGGG           TTTTTTGCTTTTGTG 100 36
JJN11_RS08435 1776719 .. 1776741 +  -4.1  -3.26031   CAAATTAAGCTGCTT          CGC-CAGTGC TACA GCACTACGCG           TGTCTTTAAGCTGCC  47 156
JJN11_RS08460 1783022 .. 1783044 +  -9.9  -5.49579   TAACTGATCCCCGCA           TGAGCAGGC CCTGC GCCTGTTCA           TTTTCTTTTTTGTCC 100 34
JJN11_RS08465 1783766 .. 1783782 +  -5.7  -3.21099   TGAAAACGAACACTT              CACGCCG CGA CGGTGCG              TTACTGCTGGCAACG  55 54
JJN11_RS08470 1786251 .. 1786266 +    -4  -3.36655   ATCACAATGAGGATA              TTAACC ATGC GGTTAG               TCTGTTTACTTATGA  50 31
JJN11_RS08475 1787333 .. 1787356 +  -4.5  -4.28254   CTAGCCTTCTGCGAA          CGGGCGT-CG GTTCA CGCGTGCCCG          TTTTACATCTTCCCG  64 37
JJN11_RS08480 1788543 .. 1788563 +  -3.9  -3.89346   GGCTGCGTACCGCAT            TCTTGCAGC ATT GCAGTAAGG            TTTATGCCCTGAAAG  57 7
JJN11_RS08505 1792979 .. 1792989 +  -2.6  -3.57572   AGCAGGGATAAAAAA                 TAAA ACC TTTA                 TATTCTTGTGTGTTT  49 87
JJN11_RS08510 NONE
JJN11_RS08515 1795730 .. 1795755 + -14.9  -4.08064   GAAAAAAGAAAAAAA         CATAAATGCCC GTCA GGGCATTTATG          TTTTAAAAAGCGATT 100 67
JJN11_RS08570 NONE
JJN11_RS08575 NONE
JJN11_RS08580 1806610 .. 1806622 + -10.5  -3.65351   CTGCAGCGGATATAG                GCCGC CGA GCGGC                TTTCGCTGCACCTGC  75 104
JJN11_RS08595 NONE
JJN11_RS08600 NONE
JJN11_RS08605 1810471 .. 1810496 + -11.1  -5.72207   CTTAACTCTTGATAC         AAGGTGTCCGG CGAA CCGGGCACCTG          TTTTTTTCCTTTCAA 100 61
JJN11_RS08620 1812689 .. 1812707 +  -3.9  -2.58999   AAGAGAATTGACTGA            GG-AGAAC GATC GTTCTACC             ATTACTCTATGAACA  44 55
JJN11_RS08625 1813686 .. 1813698 +  -3.3  -4.08767   CTGGTAAATGGATAT                TGGCG CGA CGGCA                TTTTGCAAAACTGCC  58 429
JJN11_RS08630 1814309 .. 1814333 +  -9.3  -4.42743   CGATTGATTCCGCAA          TGCCCGACG ACTCTCC TGTCGGGCA          TTTGTGTTGTTTCTC  83 46
         agp 1816304 .. 1816315 +  -7.2  -5.24129   GCCTGATAAGCGTAG                CGCC ATCA GGCG                 TTTTTTGTCCGCACG  91 139
JJN11_RS08655 1817797 .. 1817815 + -17.4  -5.65177   CCTCTGGCACCCCCG             CCGCCGGG ATC CCCGGCGG             TTTTTTTATGCCTGT 100 72
JJN11_RS08660 1818958 .. 1818978 +  -6.1  -2.61582   CAGCACCAGCGTTAC            GGCGACC ATAATCA GGTTGCC            ATTCTGGCTGAGATC  48 175
        rutR 1825444 .. 1825458 +  -7.8   -3.1978   CCGCGGCCTGATACT               GCTGCG CGG TGCAGC               TGTTCATCTCCGCCT  59 306
        putP 1831578 .. 1831593 + -11.8  -5.84381   ACAGACACGCTATAA              GCCGGG CTTG CCCGGC               TTTTTTTATTGCTAA 100 44
JJN11_RS08720 1832100 .. 1832134 +  -8.5  -3.46602   AGACCGGTGCGGCCT    GTTTGCCGGGT-GGCG CTAG CGCTTACCCGGCCTAC     TTATCCTGTAAGCCC  69 43
JJN11_RS08730 NONE
JJN11_RS08735 NONE
        efeB 1836910 .. 1836938 + -13.2  -5.67063   CTTGAGGCCTGAATA        CCGTCCCGCTTA CCCCT TAAGCGGGACAG        TTTTTTTCTCGTCCC 100 29
        phoH 1838195 .. 1838209 +  -2.8  -3.73056   TGCAGGTCTATTCCC               GGTAAT GGT ATAACC               TTCTCGTTTTACTTT  51 21
JJN11_RS08750 1840158 .. 1840177 + -13.6  -5.86061   GATGGCGCGAAAAAA            GCCCGTAC GAAA GTACGGGC             TTTTTTTTAATAGCG 100 39
JJN11_RS08780 1843795 .. 1843807 +  -9.1  -3.28791   TCTCAGTCTGTCCAA                CTGGC TGC GCCAG                TTGTCGAACCCCGGT  69 457
        ghrA 1845162 .. 1845177 + -11.8  -4.77036   GGTTACTGAGTTATA              CCCGGC GATT GCCGGG               TTTTTGCTGATAAAC 100 32
JJN11_RS08795 NONE
JJN11_RS08800 1846615 .. 1846654 + -10.3  -3.67102   GTGTTCCTGATCTCA T-TTCATGGCCGCGTATCT GTTA AGATGCGCG-CCATGAACA  TTCTACTTTCTATCG  79 89
JJN11_RS08805 1847123 .. 1847166 + -19.8   -4.0492   ACGTCACGGCGTTGA GCGAATAAAAAAGGCGAGAC CAGG GTCTCGCCTTTTTAATGCGC TTTCTGTCAGGATTC 100 18
        csgB NONE
        csgA 1851215 .. 1851230 + -10.4  -6.06723   TGTACGTCGAAAAAA              CAGGGC TGAG GCCCTG               TTTTTTTTTGGGGAG 100 50
        csgC 1851673 .. 1851697 +  -6.3  -3.57144   GTCGCCGATGCCAGT          CGACAGCCCTC CAT GAGGGGCGTTG          TTTAAGCGTCAGGGA  61 120
JJN11_RS08845 1852035 .. 1852045 +  -2.4  -4.52589   GGTTGATTACCGCTG                 AGGC AGG GCCG                 TTTTCTGTCAACCGG  63 25
        ymdB NONE
JJN11_RS08855 1854076 .. 1854116 +  -7.7  -3.09834   GCCGGTAGAGTGGTT GCTGTAATGACGCGCCGGTT CAGC GACCGGCGCG-CA--ACGGC TTAGCTGGTAACCTG  62 19
        mdoG NONE
        mdoH 1859686 .. 1859705 +  -9.3  -5.28983   CGCCAGGCAAATAAA            TACCGGC CCTGGA GCCGGTA             TTTTTATCTTTTGAG 100 104
JJN11_RS08875 1860027 .. 1860052 +  -4.1  -3.65812   GCTCAAGCTGGAATT         CACCCT-CAT CCCATTC ATGCAGGGTG         TTCTCTTCCAGCCAC  54 97
JJN11_RS08895 1864028 .. 1864061 + -13.1  -4.11183   CCCGGAGTGACCCTG     AAACCTTGCCCGGTC GCGT GACCGGGCGAGGGTA      TTATTTCTGCTGAAC 100 31
        rimJ NONE
JJN11_RS08950 NONE
JJN11_RS08955 1873394 .. 1873410 + -13.7  -4.88918   TACCCGGCGAAATGA              CGCCTGC TTT GCAGGCG              TTTTGTTTCAGGTAG 100 129
        murJ 1874987 .. 1875010 +   -16  -2.57026   CGTAATGCAAAAAAA          GGGGAGCGCC TGTC GGTGCTCCCC           ATTCCTGTGGCTATC 100 36
        flgB 1877069 .. 1877085 +  -2.2   -3.2247   AATGTTCTGCAGGGA              GGCAAT GGTTA ATGGCC              TTACTCAATATCTTT  43 14
        flgC NONE
        flgD NONE
        flgE NONE
JJN11_RS09000 NONE
        flgG 1881063 .. 1881095 +   -12  -2.78508   ACGCAACTCTAAGGT     GTAGCCCGGTGCGGT TCAC GCCGCACCG-GCTCC      CTGTTTTCGAAGATG  80 29
        flgH NONE
JJN11_RS09015 NONE
        flgJ 1883886 .. 1883927 +  -5.7  -2.89191   TGTTCTGAAAGTTCT CAAGTCCGGCTGGGGCCTG CCGA TAATCTCCAGCAGGACTCG  TGTCTGAAAGTATAA  52 33
        flgK NONE
        flgL 1886616 .. 1886640 + -16.5  -5.75945   GGTTATGTTCTGTAT          GCCCAATCCGT TTT GCGGATTGGGC          TTTTTTTTCAGGAAT 100 73
JJN11_RS09040 1888915 .. 1888932 + -12.7  -4.19238   AGAGGCAATAAAAAA             GCCGACC CGAA GGTCGGC              TTTTGCGCTTAAGCA 100 30
        rluC 1893902 .. 1893913 +  -5.8  -3.53563   CCTTCGCTCTTAAAG                CTGC CCGC GCAG                 TTTAACGGACGCTCT  55 242
        yceD NONE
        rpmF 1895190 .. 1895235 +    -5  -3.57144   ACCGCGGCCGCAAGG TTATCACTAAG--TAATCACGC GTTT GCGTGATTAGGCTTAGTGAGGG TTTCCCCGTGCAAAC  55 12
        plsX NONE
JJN11_RS09075 NONE
        fabD NONE
        fabG 1899088 .. 1899101 +  -2.3  -4.25848   TACACTACGAAAACC               ATCGC GAAA GCGAG                TTTTGATAGGAAATT  57 144
        acpP 1899369 .. 1899395 + -13.1  -5.86976   GGCGTAAGTGAACAT        CTCCAGGCGGTC ATTC GACCGCCTG-AG         TTTTTTCTTTTGTAG 100 34
        fabF 1900724 .. 1900740 +  -7.2  -5.52096   AGTGCAGTAAAAAAA              GGTCCG CTTGT CGGGCC              TTTTTTATTCGGTTT  93 56
        pabC NONE
        yceG NONE
         tmk NONE
        holB 1904276 .. 1904290 +  -2.8  -3.05531   CGCTGCCTGTATCCC               ATCTCT GAG AGAGAC               ATTATGTTTTTAGTC  43 18
JJN11_RS09120 1905137 .. 1905162 + -14.8  -2.72152   CTAAAGCGAGTAAAG         TTCACCGCCC AAACAG GGGCGGTGAA          TGCGTTTCTGGTAAC  90 74
        ptsG 1906841 .. 1906858 + -12.7   -5.4492   ACCTGGGGAGACTAA             GGCAGCC GAAT GGCTGCC              TTTTTTATATCTGTA 100 47
        hinT NONE
JJN11_RS09140 NONE
        lpoB NONE
        thiK NONE
        nagZ NONE
        ycfP 1913395 .. 1913419 + -13.6  -4.91852   CATTTTTTCAACTAA         GCCCGGC-CAC GCAG GTGAGCCGGGC          TTTCTTTTTGCTAAG 100 45
JJN11_RS09165 1914921 .. 1914944 + -18.2  -4.61231   TGCACTAATGCCTTT          GCCCCTTCGC TCTC GCGAAGGGGC           TTTTTCAGCATATCG 100 33
JJN11_RS09170 1915671 .. 1915697 + -10.1  -5.42259   TGTTCTCTGCATTTA         GCTCCCCATTC GCTCA GGCTGGGGAGC         TTTTTTTGCGCATAA 100 48
        bhsA 1917313 .. 1917332 + -13.6  -5.80248   CACTGCGAAAAAAAA            CGCTCTGC CTGT GCAGAGCG             TTTTTTTATCTGTTA 100 65
        lolC NONE
        lolD 1925242 .. 1925260 +  -6.6  -2.52933   CGCCTGAATACCGAA             CTGACCCT GAT GGGGGCAG             ATTGATGGCTTCACC  52 2
        lolE NONE
        nagK NONE
        cobB 1928318 .. 1928347 + -12.9  -2.71712   ATTGTAAGTGGTTCA       CTGCGCGAAGAGC AGAC GCTTTTCGCGCAA        ATTTCCAGGGAACGA  81 34
JJN11_RS09225 1928918 .. 1928945 +  -9.2  -3.37344   AAAAAGGATTCCTGA        CGGGAAAAATGG TTGT CCATTTATCCTG         TTCATTGACTCGCGA  67 263
        pepT 1935167 .. 1935178 +  -5.8  -3.54424   GCCGGGCAAACAACG                TGCC GCCC GGCA                 TTTCCACACATGAGG  59 75
JJN11_RS09260 1935749 .. 1935774 + -11.1  -2.57132   GTTGCGATTTTGTAG         GCCCGGTAAGCG AAG CGCC-ACCGGGC         ATTGTCACAGACAAC  72 77
         icd 1945036 .. 1945055 + -11.4  -5.64873   AGGGTTATAAATGAA            CGGGAGCC TGTT GGTTCCCG             TTTTTTATTATTAGC 100 50
JJN11_RS09345 NONE
JJN11_RS09350 NONE
JJN11_RS09355 NONE
JJN11_RS09360 NONE
JJN11_RS09365 NONE
JJN11_RS09370 1954282 .. 1954320 +  -3.1  -4.11906   TAGATTTAGACTTGC   ACTTGAATACCTCCCTC ATAAA GAGAGAGGTATCGAAGA   TTATTTCTCACTTAT  56 355
JJN11_RS09380 NONE
JJN11_RS09385 1957630 .. 1957644 +    -5  -4.65895   AAACTGGTTCCTTTC               GGAATC AGC GATTTC               TTTTTGCCTGCGCAC  71 112
JJN11_RS09390 NONE
JJN11_RS09395 NONE
JJN11_RS09400 NONE
JJN11_RS09405 1960028 .. 1960043 +  -8.2   -5.4833   AAACAAATTCTGAAA              CCTCGC TTTG GCGGGG               TTTTTTATTGCCTGC 100 152
JJN11_RS09410 1960270 .. 1960286 +  -2.3  -3.51934   CGGACCATTGCATCG              CTTCATT CTT AATTAAG              TATTTCTCACACCAG  47 34
JJN11_RS09415 1960542 .. 1960554 +  -2.6  -2.84051   ACCATCATGATCTCG                TCGG TCGTT CCGG                GTTTGATGAAGGTGG  42 31
JJN11_RS09420 1961231 .. 1961249 + -10.3  -5.37043   TCTGAGTTAAATATC             GCCTGCT AGTAA AGCAGGC             TTTTTTATATGCGCT 100 236
JJN11_RS09425 NONE
JJN11_RS09430 NONE
JJN11_RS09435 NONE
JJN11_RS09440 1963335 .. 1963352 + -10.5   -5.4505   AGGGAATAAACCACA             GCCTCGC TCAC GCGGGGC              TTTTTTATTGGAGCC 100 330
JJN11_RS09445 NONE
JJN11_RS09450 1963901 .. 1963913 +  -3.4   -3.1211   CGCCGCAACCTCAGT                GATG ACTTC CATC                TTGACTGATGTAATG  46 5
JJN11_RS09455 NONE
JJN11_RS09460 NONE
JJN11_RS09465 NONE
JJN11_RS09470 NONE
JJN11_RS09475 1969728 .. 1969743 + -11.8  -5.34655   GCGTAAACCTTAACG              GCGGCC TGAG GGCCGC               TTTTCTTTTTCCTTA 100 35
JJN11_RS09480 NONE
JJN11_RS09485 NONE
JJN11_RS09490 NONE
JJN11_RS09495 NONE
JJN11_RS09500 1971423 .. 1971438 + -11.8  -5.36441   CGTCACATTAACCCT              GCCGCC TCCG GGCGGC               TTTTTTATATCCGGA 100 46
JJN11_RS09505 NONE
JJN11_RS09510 NONE
JJN11_RS09515 1972896 .. 1972907 +  -2.2  -3.90112   ACATGTCTTCAATGT                G-GCG ATA CGCTC                TTTCCTTAAGAAAAG  52 48
JJN11_RS09520 1973127 .. 1973142 + -10.4  -5.64274   GTTTATAACTCAAGA              CCCGCT ATCA AGCGGG               TTTTTTTATGGGTGA 100 33
JJN11_RS09525 NONE
JJN11_RS09530 1976797 .. 1976812 + -11.8  -5.60993   TATTTCCTCTTCGAG              GGCCGC TTAT GCGGCC               TTTTTTTATGGGAAG 100 44
JJN11_RS09535 NONE
JJN11_RS09540 NONE
JJN11_RS09545 1978929 .. 1978944 + -10.4  -5.64274   TATTCTCAGCTACAG              GCCACC TCCG GGTGGC               TTTTTTTATGGGTGA 100 45
JJN11_RS09555 1983937 .. 1983952 + -10.4   -5.0925   CCTCAGACCATCCAA              CCCAGC TCCG GCTGGG               TTTTTCATTTTAAGG 100 50
JJN11_RS09560 NONE
JJN11_RS09565 NONE
JJN11_RS09570 NONE
JJN11_RS09575 1987290 .. 1987311 +  -7.3   -3.0814   GTGTTACGTACTTCA           TCAACAGCA CTGA TGCTGATGA            TATTCCGGTGTAAGT  59 309
JJN11_RS09585 1988704 .. 1988727 + -13.9  -3.08211   CGAAAAATGGTTCCA          GCCGTGGAG AACTCC CTCCACGGC           TACTTTTCAGAAAAT  90 196
JJN11_RS09590 1989487 .. 1989506 +   -15   -5.4756   CGGGTTGTATGTGAA            CGGGAGCC TGAT GGCTCCCG             TTTTTTATTAGCATT 100 350
JJN11_RS09600 1990646 .. 1990661 + -10.4  -3.28712   TAAGCCTATGGATTC              CGCTGC AACG GCAGCG               TTCTGGGCGGCAAGG  68 519
JJN11_RS09610 1992148 .. 1992164 +  -2.1  -2.87709   AAATAGTACCTGGTA              GGAAGCC GAT GGGTGCC              CGTTTTTTATGGTTA  40 25
JJN11_RS09615 1992721 .. 1992753 +  -4.9  -3.02144   GTGAGCAATGTCGTA      CTGAATACCTGAGTG ATT TGCTCAACTATTCAG      TATTGAGAAAGATAA  49 299
JJN11_RS09620 1993208 .. 1993225 + -12.7  -4.59853   ACACTTCAGAAAAAA             GACCGCC AATA GGCGGTC              TTTTTCCGCGATTCA 100 47
JJN11_RS09635 1995169 .. 1995224 +    -9  -3.48276   GCCAGTCGGCTAACA CCAGCGCGTGATTTTGCTC-CCGGT CTTTCGC GCCGTAGAGCAGCGTCACGGGCTGG TTGTCTGCCAGACGG  66 56
JJN11_RS09645 1996808 .. 1996829 +  -2.1  -3.74345   GCCAGCTGTAACAGC           CCG-TGCAGG GAA CCCGCCTCGG           TTTCGCTGTATCCGT  51 465
JJN11_RS09655 1998678 .. 1998736 +   -13  -2.96405   GAAGCCGGTAAAGTG CCGCTGGCGATGGGGGCCATCACCCCGA TGG TCAGGATGATGATCCCCACCGTCAGCCC CTGTTTTTCAATCCA  74 250
JJN11_RS09665 2001286 .. 2001328 +  -8.5  -3.17051   ACGTTCTGACAGAAA GCTAACGTAAAACCGCCGGTC AAT GACCGGCGG--TGGCGTTAAC TGTTGCTGGTGGCAG  64 32
JJN11_RS09680 2005885 .. 2005902 + -14.1  -4.67048   ATTTGTGCATCATAA             CGGGGCC CTCG GGCCCCG              TTTGTTTTAGGGTGG 100 61
JJN11_RS09685 2006865 .. 2006882 +  -4.7  -4.21607   CACAATGTGAATGGT             CTGTCCC AGAC GGGTCGG              TTTCTCTTCCGTCGC  64 96
        msrB 2009576 .. 2009586 +  -6.8  -3.61922   CAGCAAATTATTCCT                 TCGG AGC CCGA                 TTTAACATGAATATT  63 51
JJN11_RS09705 2009886 .. 2009908 + -14.9  -2.64412   AGCAGAACCTTTGCA           GCCCGGTGA ATGGC TCACCGGGC           CTGTTTAACGTTACG  90 40
JJN11_RS09730 2015750 .. 2015798 +  -3.2  -2.65884   TTCTGATTAATGGCA TAAAACTGTCTGGATCCTG-AGC AAGT GCAGCAGAATTCAGACAGTCATA CTTATCACTTAATGG  42 35
        selD NONE
JJN11_RS09740 2018949 .. 2018979 + -10.4  -3.42341   GCGACCTTCACAAAC       CCGGCGATGTTCGC GCC GCGAACGTAGTTGG       TCTGTTTCTCTTCCC  69 165
JJN11_RS09750 2020855 .. 2020866 +  -7.2  -2.52543   TGTGATAGCGCGCTT                CCGG CGTG CCGG                 TGAATTCCGCGACGT  50 119
JJN11_RS09760 NONE
JJN11_RS09765 2022795 .. 2022809 + -11.4  -3.09635   GTCCTGACGATGCAG               CAGGCC GCG GGCCTG               TTCGGTGCTCAGCAT  69 428
JJN11_RS09800 NONE
        astA NONE
        astD NONE
        astB NONE
        astE 2035086 .. 2035115 +  -9.3  -4.77173   TGCCTGAAAATTACC       TGACCCCATCTGCG TAA CGCGG-TGGGGTTG       TTTATTTTCTCAGCC 100 34
         spy 2035927 .. 2035977 +    -7  -5.79595   TTCAGCTATTCAAGA CCGCCGGAGTCTTGTCCAC-TCAAG CAGA TTTGCTGTGGGCAGG--TCCGGCGG TTTTTTCTTTTCCAG 100 45
         ves 2036854 .. 2036866 +  -4.8  -3.53012   CGCAGCAGTTCCGCC                GCCT CGTCC AGGC                TTTCGACCGCGCCCA  53 121
        osmE 2039127 .. 2039142 + -11.8  -5.61881   CTGAGCAGATCCAAA              CCGGCC AACT GGCCGG               TTTTTCTTTTTCCCC 100 53
        chbB 2039735 .. 2039753 + -13.2  -2.77431   ATTTCACACATTTAC             GCCGCAAT ATT ATTGCGGC             ATTTAAGGGTATTTT  85 71
        chbC NONE
        chbA NONE
        chbR 2042461 .. 2042472 +  -4.4  -2.52623   TACTTAAAAAGCGGA                TCTC CAGG GAGA                 ATATTATGCAAAAGA  44 111
JJN11_RS09870 NONE
        chbG 2044701 .. 2044727 + -10.1  -5.40474   TACACGGAACCGTAG        GCCGGGTAAGCG CAAG CGCC-ACCCGGC         TTTTTTTACGCAGGT 100 123
        cedA 2047456 .. 2047477 + -10.1  -5.81412   ACAGAGATAAAAAAA           CCGCCGTCA TTAC TGAAGGCGG            TTTTTTTTAACTCAG 100 40
JJN11_RS09910 2051964 .. 2052001 + -16.2  -2.57344   CTCGGCCTGATCTAA   GCGTTCGCTGCCGGGC GCTGAA GCCCGGCAGCCTGCGC    GTTATGCCGCCAGTA 100 26
JJN11_RS09930 2055337 .. 2055359 +   -12   -5.2197   AAAATGTAATTATCG           CGGGCCAAGA ATA TATTGGCCCG           TTTTTAATTTTTGTG 100 32
JJN11_RS09935 2055868 .. 2055902 +  -7.4   -5.1286   GGCTGTTATTGCCAC     TAAAAAAACCGG ATTTTGATGTA CCGGTTTTTTTA     TTTTTGTCATTTTTG  88 73
        thrS NONE
        infC 2059128 .. 2059153 + -13.3  -4.65916   CTTCAAGTAGCAATT         CCTGTGGAGCC GACA GGCTTCGCAGG          TTTTGTTCGCCTACG 100 44
        rpmI 2059408 .. 2059420 +  -4.9  -5.15969   CCGTACGCATAAGTC                GTTAA CGT TTAAC                TTTTTTAACTTAGAA  80 29
        rplT 2059823 .. 2059841 + -12.4  -4.54727   ATAAGCCAGTTGAAA             GGGGGAGC TCT GCTCCCTC             TTTTCGTTTCAACAG 100 37
        pheM 2060028 .. 2060043 + -10.4  -5.24989   AAACAGCGCCAGAAA              GCCTCC TGAT GGAGGC               TTTTTTCGTATCTGC 100 50
        pheS NONE
        pheT NONE
        ihfA 2063801 .. 2063816 + -11.8  -5.64421   TGATCTAACTAAAAA              GGCCGC GAAA GCGGCC               TTTTTTCTTTGCGCT 100 43
        btuC NONE
JJN11_RS09995 NONE
        btuD 2066278 .. 2066288 +    -4  -3.85254   CAGAGGATTCGTCGG                 GAAT GCG ATTC                 TGTTTTCTCCTGGTA  57 96
JJN11_RS10005 2066741 .. 2066778 + -10.6  -4.67011   GCAAGCCCGGCGTAT   TTAACC-CCGTCGCGCC AGGCG GGCGCGACGCAGGATAA   TTTTTAAATGAAATT 100 22
JJN11_RS10010 2067747 .. 2067758 +  -2.2  -2.63585   GTGCAGTGATAACCT                TGGT CTTA ACCG                 GTGTTTAACATCTGA  39 32
        selO 2069404 .. 2069422 +  -2.2  -3.41627   GATACGGCGATCGGT             CGCCTCCG GAG CTGGCGCG             GTTTTGTCTTCATGA  46 182
        ppsA 2074448 .. 2074469 + -13.1  -5.64421   TTATGCACGATAAAA           GGTGAGGAT ATTG ATCCTCACC            TTTTTTATTTCCCCT 100 49
JJN11_RS10040 NONE
JJN11_RS10045 2078745 .. 2078793 +    -6  -4.63527   AAACCCAATTGATAA GTGGAGCTTAACATTCTGGTGGG CGAA CCCACCAGAACGG-GAGCGTTAC TTTTTGACCTCGTCC  75 324
JJN11_RS10060 NONE
        menI 2083580 .. 2083595 + -11.8  -6.07374   TGATCTGAAGCGAAA              GGCCGC AAAA GCGGCC               TTTTTTCTTTTTTAT 100 33
        sufA NONE
        sufB NONE
        sufC NONE
        sufD NONE
        sufS NONE
        sufE 2089933 .. 2089959 +   -18  -4.72486   CAGCCCTCATTCTGC         TCCGCGAGACGG CTC CCGCCTCGCGGA         TTTTTCAGCTTTCTG 100 51
JJN11_RS10100 2091029 .. 2091047 + -14.6  -4.63218   GGGGCAAAAAAAAAA             TGGCGCAC AAT GTGCGCCA             TTTTATTAACACAGG 100 51
JJN11_RS10115 NONE
JJN11_RS10120 NONE
JJN11_RS10125 2096164 .. 2096186 +   -17  -5.36441   CCGTTTGATTTCAAA           GCCCGGCGAG TCT CTCGTCGGGC           TTTTTTGTATAACGG 100 46
        fumD 2096444 .. 2096467 +   -11  -3.55548   AAACCGTCGTTAAAG          CGCTGGCCGGT TAA GCCG-CCAGCG          TTTCGCCAGCTGTTC  79 12
JJN11_RS10155 2100051 .. 2100073 +  -4.1  -3.07816   TTCCTGCTAAGGTCT           CTGGCGT CCTTTTCCT GCGCCAG           TTAAATGAATGAACA  47 155
JJN11_RS10160 NONE
JJN11_RS10165 NONE
JJN11_RS10170 2102676 .. 2102696 +    -9  -4.66609   GGCATAAAACTAAAA           GCCCC-GAC GCGA GTCCGGGGC            TTTTTACATCAGATC 100 115
JJN11_RS10180 2103836 .. 2103846 +    -4  -2.75229   AAAATGAGACATTGC                 TATG CAA CATA                 TCATTGAAGGTTTTC  45 96
JJN11_RS10185 2104483 .. 2104506 + -18.2  -3.82946   AGTAACACGCCGCAT          TCAGGGCGGG CGAT CCCGCCCTGA           TTCTGTTTACGGTAG 100 36
JJN11_RS10220 NONE
JJN11_RS10225 2113020 .. 2113039 + -12.2   -2.6063   AACGATTTTAAATCC            GCCGCAAT AAAT ATTGCGGC             TCCATTCTCCATCCA  78 74
JJN11_RS10230 NONE
        hisD NONE
JJN11_RS10240 2117127 .. 2117172 +  -4.6  -4.13343   GGGATATCTTCTCCT GCAGAGACAAGCTGTTCGCG CAGGGA CGGAAACGGCAAGTCTTTGC TTTTCAGCGCTTTCT  64 229
JJN11_RS10265 2121226 .. 2121245 +   -15  -5.00616   ACGCATGATAAAAAA            GACCCCGG CAAG CCGGGGTC             TTTTTTAGCGGGGCA 100 33
        punR 2125292 .. 2125304 +  -7.7  -4.07885   CGGTTCAAAGTCGCC                CTGGA CGA TCCAG                TTTTCCGGCACCGTG  71 403
JJN11_RS10290 2126337 .. 2126361 + -12.2  -2.63234   GCTGCACTGATATTT         G-CGAGGGAGC TAAC GCTCCCTCGTC          TCCCTTCTGCTATTG  78 31
JJN11_RS10295 2127671 .. 2127693 + -17.8  -4.93365   CGAATAACACCAAAA           CGCAGAAGGC CCG GCCTTCTGCG           TTTTTCGTTATGCCG 100 34
        grxD 2129937 .. 2129952 + -10.4  -5.66684   ACGGTAAATAAAAAA              GCGACC TTCC GGTCGC               TTTTTTTATGCGTTG 100 49
JJN11_RS10340 NONE
JJN11_RS10345 2135931 .. 2135946 +  -3.3  -3.81885   CAAAGCCGCGCTGGG              TTACG ACGTGC CGTAA               TTCTCTATTTGTCTG  55 10
        sodC 2136554 .. 2136572 + -10.2  -3.04263   GATTTGATCGCTGAG             GGTGCCCG GTG CGGGTGCC             TGTTCCAGCTGGGAT  66 34
        slyA 2140296 .. 2140313 + -11.3  -5.33405   CTAACCTTTAAAAAA             GCCTTGC GAAC GCAAGGC              TTTTTCTTTACTGGA 100 37
        anmK NONE
        mliC 2144173 .. 2144196 +  -7.3  -2.58663   TTGAGATTTTGCAGG          GGGCGGCGC ACAATA GCGTCACCC           ATTGTCAACGTCAGT  56 37
        pdxH 2144898 .. 2144922 +  -6.4  -4.42974   AATTTGTTCTCTTAA          GCGCTGGC GCTACGTTG GTCAGCGC          TTTATTCTATGTACC  74 48
        tyrS 2146286 .. 2146315 + -12.1  -5.06103   AAATAATCATAAAAG       CACAGGGGCGTGG GAAA CCACGCCCCTTTA        TTTTTTCAGGGTTGT 100 35
        pdxY 2147599 .. 2147609 +  -5.4  -4.36914   GGCGATGTAGTTCAT                 CCAT TCA ATGG                 TTTTATAGCGGGCGA  69 424
JJN11_RS10470 2159061 .. 2159077 + -15.1  -5.06414   TGGCCTGAAAACAAA              GCCCGGC AAT GCCGGGC              TTTTTCTTACCCGCG 100 33
JJN11_RS10490 2164662 .. 2164683 +  -5.7  -3.16071   ACGGTTGTCCCGCAG           CGGGGCGAT ACGT AACGCCACG            TCTATTCCTCTGCCG  49 487
JJN11_RS10500 NONE
JJN11_RS10505 2167073 .. 2167088 + -10.4  -4.51363   ACTGGCAATAAAAAA              CCCCTC CGCA GAGGGG               TTTTGCTGTTTACTG 100 40
        fumA NONE
        fumC 2173479 .. 2173497 +  -6.6  -4.25104   GATCAGCGGCGTCGG             GCAGGCGT ATT GCACCTGC             TTTTGCTGCCCGGCA  69 191
JJN11_RS10560 2180290 .. 2180310 +  -5.3  -4.21194   ATTATGGATAATGGC            GCGTAACCC GGT GGTTTCCGC            TTTTACCTGGTCGGC  66 505
        pntA NONE
        pntB 2186584 .. 2186599 + -11.8  -5.05116   TCCACAGTGAATAAA              CCGCCC AACA GGGCGG               TTTTCTTATTTCTGC 100 51
JJN11_RS10590 2187794 .. 2187811 + -14.1   -5.5762   AGAGCTAGAAAAAAA             GCCCGCC AATT GGCGGGC              TTTTTTATGTTTAGT 100 33
JJN11_RS10625 2195751 .. 2195763 +  -3.3  -4.20367   ACACAATTCAGGCGC                CATGC CCG GCAGG                TTATTTCTTAACCAC  60 2
        smrA NONE
JJN11_RS10635 NONE
        mdtJ NONE
        mdtI 2199789 .. 2199816 +   -12  -3.06762   AACTGGCCTGATAAC        GTCGCTGCCTGT CATT ACGGGCAGCGAA         ATTTATCTCCTGTAT  81 30
JJN11_RS10655 2202339 .. 2202352 +  -5.2  -3.85698   GCCTCTTTCAGGGCG               GCGG TCAGCT CCGC                TTTATCCCCGGCAAA  61 331
JJN11_RS10695 NONE
JJN11_RS10700 2210372 .. 2210401 +  -5.8  -2.55253   AGTCTTACCAAAAAT       TGCGCTATCT CAAACCGGGC GGATAGCGCA        TACCTTAGACTTCCT  50 52
        bioD 2211210 .. 2211234 + -11.4  -2.90496   CAGGCGATCAGCAAA          CCGGGCAGCA GAACA TACTGCCCGG          TCATTTCACAAACCA  76 69
JJN11_RS10750 2219629 .. 2219662 + -17.6  -4.58283   GATGCCTTCACAGGC     GGCGCATGACGTTT AGCTGA AGACGTCATGCGCC      TTTTTGCGGAAGTTA 100 114
JJN11_RS10760 NONE
JJN11_RS10765 2220448 .. 2220464 + -12.3  -3.62354   TAGATAGAGAGAGAT              GGCATGC CGG GCATGCC              TGTTTCATTTAAAAA  88 54
JJN11_RS10770 2220904 .. 2220934 +  -8.2  -3.12327   GGGTGGCGTATAAAG       CAGGCTGACGCAAC CAC GTCAGGTCAGCCTG       TCTTAGATATAGCGC  64 18
JJN11_RS10785 2223486 .. 2223509 + -10.2  -4.81852   TCTCTCTGATCCTCC          TGCCCCGGCG CGTG CTCCGGGGTA           TTTTATTGATTCTAC 100 32
JJN11_RS10800 2226953 .. 2226975 +  -5.5  -4.60797   TCACGGTGGCGCGGG          CGGAGCAGCC GACA GGCTGG-CCG           TTTTCTATGTGGGCC  73 88
JJN11_RS10805 2228136 .. 2228158 +  -3.2  -4.16182   CCAGGATGATCTCTC           TGGCGCCCGG AAG CCCGGCAACA           TTTCGTTTGTCGTAC  60 325
JJN11_RS10865 2238324 .. 2238338 +  -2.8  -2.87564   TGGCACCATCGCGGT               GCAC CCTCCCT GTGC               TCTCTCCCCAAATCG  42 89
JJN11_RS10870 NONE
JJN11_RS10875 NONE
JJN11_RS10880 NONE
JJN11_RS10885 NONE
JJN11_RS10890 2242669 .. 2242686 +  -5.5  -3.61178   TGGCAGCGCCTGCGC             CAGACGA TCTA TCGCCTG              TTTGAACTGCGTGCC  56 52
         uca NONE
        atzF 2248448 .. 2248481 +  -2.5  -4.09685   GCCAAAGTGATCTTC    CGGC-TCGTTGTTCG CCATCT CAAAC-ACGATGCCG     TTTTCCCGCATCCAC  56 281
JJN11_RS10920 2252558 .. 2252581 + -18.2  -2.71924   TTGAGTACTATTAAA          CACCGCGCAG GAGG CTGCGCGGTG           CTTTCAGGCAGAATC 100 27
JJN11_RS10930 2253385 .. 2253408 +  -6.6  -2.94099   CATTATCGTGGCAGG          TTGGGGGCGC GCAT GAGCGCCCAA           TATGTGATCCAGCGA  55 10
JJN11_RS10935 NONE
JJN11_RS10940 2255777 .. 2255791 +  -4.2  -3.11222   TGAATGCGGTTTAGC               GGTACG CAT CTTACC               CTTTTGAGATTGCCA  48 47
JJN11_RS10945 2257197 .. 2257223 + -10.9  -5.04385   CTCGTAGTTGCTGAC         GACTCCTCTGT TATAC GCAGGGGAGTC         TTTTTTAACCCTGTC 100 34
JJN11_RS10950 2258980 .. 2259006 + -18.8  -4.49337   GGCTAATTATTATGC         CGAATGCCGCCG CTA TGGCGGCATTCG         TTTTGGTTACTCTTC 100 35
         dcp 2262762 .. 2262778 + -11.5  -5.27923   AGGCTACAAACAGAA              CCGGGCG CGA TGCCCGG              TTTTTTGTCCACTTA 100 51
JJN11_RS10970 2263791 .. 2263804 +  -9.5  -5.36441   ATAAAAATTTAATAA               CCGCC TTCG GGCGG                TTTTTTATGTAAAGC 100 37
JJN11_RS10975 2264337 .. 2264353 + -13.7  -5.98781   CCATGCAAGCATTTA              CCGCCAG TCT CTGGCGG              TTTTTTTTGCTTATC 100 145
JJN11_RS10980 2265642 .. 2265680 + -11.1  -3.40522   AGTCTGGTAACCGCT   TCTCACAGCGTTGCATT AATAA AGTGCAACGCTGTGCCA   TTCTGATCCGCGCCT  78 31
        urtA NONE
        urtB NONE
        urtC NONE
        urtD NONE
        urtE 2271321 .. 2271347 +  -8.1  -3.41024   TGTTATACTATAACA         TCCTCACTC ACTTAAACG GAGTGAGGA         TATTATCTTGGCAGG  64 59
        zinT 2272008 .. 2272049 +  -6.5  -3.38581   TTAATTTCGGTGCGA TATGTGTGCCGGGTGGCGGC TGC GCC-TTACCCGGCCTACGAA TATTTCGGAATTCAT  59 37
JJN11_RS11015 NONE
JJN11_RS11020 NONE
         hcp 2273595 .. 2273613 +  -8.1  -2.62983   AGACTGGCCCGGCAA            GCGCCGCG TCGC CG-GGCGC             TGCTCTCAAGCTACA  58 70
        eamA 2276068 .. 2276081 +  -2.3  -3.72576   ACGGCTGTGTGGCTG               CGGCA CGGA TGGCG                TTTGCTCCGCAAAAC  51 190
JJN11_RS11055 2278291 .. 2278304 +  -2.3  -2.78679   CCCAGACCAGGCTCA               GCAGC GCCA GATGC                ATTTCACTCCCGGAG  39 352
JJN11_RS11065 NONE
JJN11_RS11070 2281075 .. 2281108 +  -3.8  -3.05596   ATGCCGCACTCGCCG    TAGGCCGGGTAAGGCG CAGT CGCC--ACCCGGCAAA     TTCCATGCCGCACTC  47 127
JJN11_RS11105 NONE
JJN11_RS11110 NONE
JJN11_RS11115 2290398 .. 2290408 +  -8.2  -2.69151   TTTCAGCGATAGTGG                 CGGC GAT GCCG                 TACTCTGTGCAGCCC  53 262
JJN11_RS11125 2291789 .. 2291809 +  -3.1  -4.56597   CGGCGCCATACCAGC            CAGGTGGTG AGC CAGCGCCAG            TTTTTCGCCAGCGGC  69 70
         sad 2294211 .. 2294231 +  -2.6   -3.1883   CACGTCTAAGTCCTT            GTTAATGA AGAAA TCATGAAC            TTAATGCAAATTTTT  45 178
JJN11_RS11140 NONE
        glsB 2296902 .. 2296915 +  -6.7    -3.136   CAAACTTTTAACATT               CATCC GCGT GGATG                TGTATTCAATGTTAA  57 134
JJN11_RS11150 2298559 .. 2298575 +  -2.1  -2.91395   CTCAGTAAATCCCCT              CGCGTGC CTG GCAGTCG              GTTTATCAAACGCAT  40 177
JJN11_RS11155 NONE
JJN11_RS11160 2300614 .. 2300624 +  -2.4   -3.4678   GAAGGGAGAAGTAAA                 CCCC GCA GGCG                 TTCTGGTCTACAAAT  47 41
JJN11_RS11165 2302218 .. 2302267 + -11.6  -3.40899   AACCGCTCTGCTAAG CC-ATG-GAGC-CTCCCTCTCTCCT GAC GGGAGAGGGGGAGCGCCCGCATAGG TTATCCTGACCGGTT  82 27
JJN11_RS11170 2303369 .. 2303383 +  -3.4  -2.58418   GCTGACGTAATTTCC               CGGGTC ATC GGGCCG               CCTTTTGTATCGCAG  42 31
JJN11_RS11175 NONE
JJN11_RS11180 NONE
JJN11_RS11185 2306835 .. 2306851 +  -3.5  -4.86731   GGGAATAAGCCGAAG              GCACCGC AAC GCGGCGA              TTTTCTTTGCCGGGA  73 263
JJN11_RS11190 2308362 .. 2308378 +  -2.1  -4.26903   ACAGCCGCGGAAAGG              CCAGCAG TAT CTGCCCG              TTTTCCTGAAGTGGA  62 67
JJN11_RS11205 2310619 .. 2310639 +  -8.3  -4.14243   CTGATCGCAGGAAGA            GCGTAGC CGTATAA GCTACGC            TTTTGCAGTAACCTG  77 51
JJN11_RS11210 2311047 .. 2311064 + -12.7  -6.19443   GGGAAGAAAAAAATG             CCGGCAG CCAT CTGCCGG              TTTTTTTTTGCTATG 100 55
JJN11_RS11215 2311459 .. 2311470 +  -4.4  -3.54676   CCCACAGAAAGGTGC                CGAT CATG ATCG                 TTGATTTCGCTCACT  52 10
JJN11_RS11220 2311875 .. 2311887 +  -6.9  -2.52464   ATTATCGCAACGCTG                GCCGG TTT CTGGC                TCGGTTAAGGAGGAG  52 5
JJN11_RS11225 2312411 .. 2312421 +  -8.2  -3.34398   TCTTGAGGTAGGAGT                 GGGC ATA GCCC                 TCTTTGACAAACCCG  61 118
        grxB 2313687 .. 2313709 +  -3.2  -3.03635   ATAAGGCGTTGTAAT           TGAAGGGGGG CCG CCCCCGAACA           TATTAAGCAGGTTTA  45 27
JJN11_RS11240 2314143 .. 2314166 + -14.6  -6.00086   TCGCTGAGCCTGTCG          CCGCAAGCGG GTAA CTGCTTGCGG           TTTTTTTTGTCATAT 100 52
JJN11_RS11265 2318931 .. 2318942 +  -5.8  -3.57144   AGGCGTTAGCCATAC                CTGG TGGG CCAG                 TTTCACGGTAACGCG  59 256
JJN11_RS11280 NONE
JJN11_RS11285 2322625 .. 2322644 +   -15   -4.4078   GCTAAGTCAATGATT            CGGGTGGC CTTC GCCACCCG             TTTTACTTCCGCGCC 100 36
JJN11_RS11315 2333345 .. 2333365 + -13.3  -3.87149   CACGCAGCGTAATAA            GAGGGCACG AAA TGTGCCCTC            TTTCCGTTTACTCAG  95 53
JJN11_RS11325 2338564 .. 2338579 +  -3.2  -4.89393   TGATAAGAGGCCAGG              GAGCCA CAGG TGGCTG               TTTTTATCCCCTTTC  76 354
JJN11_RS11340 2339809 .. 2339821 +  -4.7  -4.78839   TCGACGGGTAACGTT                GCTGG TTT CCCGC                TTTTCTTGTACCCTT  73 78
JJN11_RS11345 2340216 .. 2340238 +  -9.2  -2.64091   AGTCACTATCCGGGG           TGATAGCCTG GCC CAGGTTGTCA           TCCTGTACCGTACTT  60 81
JJN11_RS11380 2351872 .. 2351896 + -10.7  -3.93695   CCGCTTTCAGCAGCT          GTGAAACCGGG CAT CCCGCTTTCGC          TTTCTGGATAATGCC  77 95
         bdm NONE
         sra 2353076 .. 2353098 + -13.5   -5.4433   CCTAAAGATCCCCGA           CACCATCGG CAAAA CCGATGGTG           TTTTTATTTGTATGT 100 47
JJN11_RS11400 2355176 .. 2355186 +  -5.4  -3.16683   GCCGGGTGCGAAAGA                 TCAG GCT CTGA                 TTGGTGACATGCAAT  49 272
JJN11_RS11410 2358248 .. 2358276 + -13.1  -4.87291   CGCAGCTGTAGGAGA        TCGCCCGGCGG GTAGCCG CCGCCGGGCAA        TTTTTACTTCGGCTG 100 30
        adhP 2360167 .. 2360178 +  -2.2  -3.17075   TCATAACTCTCGCAT                GC-CC GGC GGCGC                TTCGCTTGCCGGGCC  43 35
JJN11_RS11425 NONE
JJN11_RS11430 2361735 .. 2361771 +  -5.9  -3.36785   GGGAAAACGTAGGCC  CGTGCAAGCGCAG-CGCC GCCG GGCATCTGCGC--GCACG   TTGCTTAGGCTATCG  57 93
        ppk2 2364133 .. 2364160 + -12.7  -2.77895   GTAAGGAGCATTAAA        CCCGCTCCGAA ACACCG TCCGGAGCGGG         GTTCTTCCCCGTAGG  81 188
        yddG 2370201 .. 2370214 +  -5.2  -3.54741   AACATCGGGCCACTG               CGCC GCAGCG GGCG                TTTCACCCCCTGCTG  55 312
JJN11_RS11470 NONE
JJN11_RS11475 NONE
JJN11_RS11480 NONE
JJN11_RS11485 NONE
JJN11_RS11490 NONE
JJN11_RS11495 NONE
JJN11_RS11500 2377518 .. 2377546 +  -8.7  -3.14211   GAGTCATAAACAGGC        ACTTTCCCCGGCC AAC GGCCGGGGAACCA        TTAATCGAAAACGCT  64 32
JJN11_RS11525 NONE
JJN11_RS11530 2383708 .. 2383724 +  -5.8  -4.45168   GACATGGTTTCAATC             GCC-CCG GCAG CGGCGGC              TTTCTCTTTTGGCGC  72 347
JJN11_RS11540 2385707 .. 2385722 +  -7.6  -3.62816   ACCTTCATCAAAATT              TCAGAC TTCT GTCTGA               TTGTACTTCTCTTTC  68 165
JJN11_RS11545 NONE
JJN11_RS11550 NONE
        narH NONE
        narW NONE
        narI 2393950 .. 2393974 +  -7.7  -3.35046   GTAGGCCGGGCAAGC          GCATGCGCCGC CCG GCGTTGCAGGC          TATTTCCCCGCCTGC  64 99
JJN11_RS11590 2399168 .. 2399223 + -15.4  -3.07895   CCACAAAGGCCACCG CGCCCTTGCCGGGGATGACGTTGGTGA TGA TCCCCACCGTC-TCCCCGGTCAGGCTG TCTATTACCGGTCCG  85 241
JJN11_RS11605 NONE
JJN11_RS11610 NONE
JJN11_RS11615 2403311 .. 2403339 + -11.1  -3.78022   AAGAGATAAAATCAA        CACCCTTATAGAT AAT AACTGTAAGGGTG        TTTCGTGAATATCAC  81 32
JJN11_RS11640 2409343 .. 2409354 +  -3.6  -4.36914   CCCATTCAAGGTTTG                CCGG GATA CTGG                 TTTTCTGGGAAGAGA  65 393
JJN11_RS11775 2437938 .. 2437953 +  -3.2  -2.78032   AAACCATGCATAATC              AGACAG ATAC CTGTCG               CTGTTTTCCACAAGG  43 133
JJN11_RS11780 NONE
JJN11_RS11785 NONE
JJN11_RS11790 2441999 .. 2442010 +  -5.8   -3.0094   CTCATTATGCGCCTG                CCAC ACAT GTGG                 TCTGTATGCCTGGGC  53 108
        ansP 2443790 .. 2443809 + -13.6  -5.75342   CGCTTCAATAAAAAA            GGGAAGGC AGAT GCCTTCCC             TTTTTTTTGCCCGGG 100 42
JJN11_RS11810 2445011 .. 2445041 +  -6.7  -3.77831   ACCCGTCCTCATTGC      CCGGCGGCGCTGCG CTTG CGC-GTGCCTACGG       TTTGGCTGTTGGTAG  63 80
JJN11_RS11820 2448805 .. 2448852 + -19.4  -2.88427   CCGTCTCGTATCGCT TCGAGTGAAAAAAACCGGCAGC CGAG GCTGCCGGTTTTTTTTACGCCA TCTGTGCGCGCTGTT 100 18
JJN11_RS11845 NONE
JJN11_RS11850 2454323 .. 2454340 +  -4.7   -4.1043   GGTCAGGCTGTCATG             GCGGGCC TCCT GGTCCTC              TTTGTACTGTTTACC  64 63
JJN11_RS11865 NONE
JJN11_RS11870 NONE
JJN11_RS11875 2463291 .. 2463315 +   -10  -2.72144   CGAAGCCGCCACCCG          GCAGTGTTGC GCCGG GCGGCACTGC          GTTTGCCCGGCCTAC  66 326
JJN11_RS11880 2464036 .. 2464054 + -14.6  -2.71712   CGTTGCTCCGCGCCA             CACTGCCC AGG GGGCAGTG             CTTTGGAGGCAACCC  80 321
JJN11_RS11895 NONE
JJN11_RS11900 NONE
JJN11_RS11905 2466553 .. 2466572 +  -9.2  -2.83271   TATGGGACGGCTCTG            CTTCGGCG GAAC CGCCGGGG             TCATTGTCGGCGTCG  61 456
JJN11_RS11950 2476697 .. 2476723 +  -6.5  -2.57931   AGTCCCTGCCCGTAG        GCCCGCGCAAGCG AAA CGCC-GC-CGGGC        ATTATGCCGGGTGGC  53 169
JJN11_RS11955 NONE
        cydB 2479426 .. 2479438 +  -2.6  -2.94199   TCGCGGAAAAGTCCA                GCCT GGGGA GGGC                TATCATTGATGAATC  43 4
JJN11_RS11965 2479760 .. 2479776 +  -3.5  -4.63218   GGGAATAAGCTGAGG              GCACCGC GAA GCGGCGA              TTTTCTTGCCGGGAG  66 210
JJN11_RS11970 2480265 .. 2480277 +  -4.8  -4.08945   AATTACGCGCCTTTA                CGCT TCGGC AGCG                TTTTGAGCAGATCGT  62 39
JJN11_RS11985 2484390 .. 2484417 +  -6.2  -3.30443   CGGCGACAGGCCGCC        CGTGACCGTTGGC AAC GCCCACTG-CACG        TTACTGTAATGCTGC  54 335
JJN11_RS11995 2486019 .. 2486045 + -13.6  -2.86661   CGAACGGCGTAACAA         AACCGGCCTGCC CGC GGCAGGCCGGCC         TGATATTATTGGGTT  85 29
        pepT 2489948 .. 2489980 +  -8.9  -3.07994   TACGGTATTACAGGC      CCGTGCAAGCCCTGC GCC GCCGGGCAAGAACGG      TTACGTCGGCTTACG  66 173
        ydcK 2492778 .. 2492799 +  -7.1  -3.28712   AAAGCCGTTGCGCAG           CGCCACCTG ATTG CTGGCGGCG            TTGTCAACGCGGCAC  56 122
JJN11_RS12050 2498138 .. 2498156 +  -2.4  -3.53091   CTTAATCCAGGCTGA            CGTGGTG CTTCAT CACC-CG             TTTAAACAGCACCAT  47 26
JJN11_RS12065 NONE
        dmsB NONE
JJN11_RS12075 2505322 .. 2505348 + -13.7  -4.08557   TCGCCTTAACGCTAA        GCCCCCTGCGCC CCCT GGCGT-GGGGGC         TTCTTGTTTGCGCCG 100 51
JJN11_RS12080 2506185 .. 2506207 + -11.4  -2.88544   AACCCCTTTAATGTT           GCCATTTTGT TAT GCAAAATGGC           TCTCTCCCCCTACAC  76 39
JJN11_RS12085 2507318 .. 2507336 + -12.4  -5.33026   TCTCACCCCTCTCCA             GCCCGTCG TGA TGACGGGC             TTTTTGTTTCCATTA 100 41
JJN11_RS12090 2509980 .. 2510001 + -13.7  -5.72622   GCCTTTAACCGTCGA           GCCGGCTAC CTTT GTGGCCGGC            TTTTTTATTTCTACG 100 43
JJN11_RS12130 NONE
JJN11_RS12135 2516622 .. 2516638 +  -5.1   -3.0976   CTCCCTCCCCGGCTC              TGGCATA ACT TAAGCCA              TATTAACGTATTAGC  52 97
JJN11_RS12140 NONE
JJN11_RS12145 2518775 .. 2518799 +  -9.1  -4.17657   GCGATAAGTCTTCAG          GCCGGGCAAGC GCA GCGCGTCCGGC          TTTTCCCCTCTCATC  80 34
JJN11_RS12155 2520983 .. 2520997 +  -4.2  -4.55128   GTGTGGTATATCGCG               GGGACA ACA TTTCCC               TTTTCATTTGCCACT  68 486
JJN11_RS12190 2528402 .. 2528414 +  -3.3  -3.01712   TGAACAGGCGGCGCA                GAACG TTA CGCTC                TGTTGCGGGCAGCCG  42 396
JJN11_RS12200 2529875 .. 2529885 +  -6.8  -3.28712   GCTAGCCATCCCGCC                 CGGT GTC ACCG                 TTGTGACGCCGGGAA  59 36
JJN11_RS12215 2532223 .. 2532233 +  -4.6  -3.58343   GTTGAGATAGCCAAC                 GGCG TAA TGCC                 TTTCCAGATCATCAA  53 358
JJN11_RS12225 2533840 .. 2533855 +  -2.5  -3.76021   CAGGATATTGCCTCC              TGGCT CAAAAC GGCCA               TTTAACGTTTGTCTT  50 5
JJN11_RS12235 2535957 .. 2535972 +    -6  -2.73483   TTCCAGCACCAGGCA              CCCGGC CGCC GCCGGA               TCGTTCACATAGCGT  49 313
        bdcA 2537248 .. 2537263 +  -4.7  -3.57462   CAAAATGGGCGTACA              GATCG ACATGG CGATC               TTTACACATCAGGTG  53 194
JJN11_RS12255 2538876 .. 2538887 +  -2.2  -3.32343   CGATAACAATATCCC                CGTGC TGC GC-CG                TTCTGGCGCTGTCGA  44 216
JJN11_RS12270 2541026 .. 2541046 +  -8.2  -3.10245   GTGGCGGACGCAAAC            CCGCAGCG TAATC CGCTGCGA            TATATCTTCCGCTAA  64 15
JJN11_RS12275 2541418 .. 2541438 + -11.1  -5.24129   TGTGTTTATTTTTTT            GCCCGGC CTTCCCC GCCGGGC            TTTTTTATGCCGCCC 100 67
         gap 2544480 .. 2544491 +    -3  -2.55282   GCTGCCCGCAACCTG                TGAA ACTG TTCA                 GGTTTTCATTCCGTT  40 60
JJN11_RS12295 2545634 .. 2545657 +  -8.2  -2.62613   CAAATAGACCACCTG          GGTCTGCA AATACTCG TGCAGACC           GTGTTTGCCATCCGC  61 184
JJN11_RS12310 2549773 .. 2549794 + -17.3  -2.86164   AACTCTGATCCCCAG           GCGGCCAGC ACTT GCTGGCCGC            TGTCATACTTACCGC 100 33
JJN11_RS12315 NONE
JJN11_RS12320 NONE
JJN11_RS12325 2554065 .. 2554104 +  -4.8  -3.72893   GCGGCTGGTCGGCAT  CGTAAACGCCGGGCG-GCG CTA CGCTTGCCCGGCCTACAGG  TTTCATAGGCCCGTG  57 21
JJN11_RS12330 2555302 .. 2555315 +  -3.1  -3.82084   TGGTCATATCTACCC               GC-CCT TTC AGGCGC               TTGTTGATATTGAAC  55 503
        azoR 2559644 .. 2559679 + -21.2  -4.62984   TCCAACGCTGAAATC    TCGCCGGGGAGTGGTG CACG CATCACTCCCCGGCGC     TTTTATGTCTCCTGC 100 43
JJN11_RS12350 NONE
JJN11_RS12355 2562296 .. 2562317 + -12.3  -4.67038   TCGCGTAAGTTTGCC           CCTCTCACC GCCC GGTGGGAGG            TTTTGCTTTTCAGCC 100 33
JJN11_RS12385 NONE
JJN11_RS12390 NONE
JJN11_RS12395 NONE
JJN11_RS12400 NONE
JJN11_RS12405 NONE
JJN11_RS12410 NONE
JJN11_RS12415 2578267 .. 2578300 + -15.5  -3.05384   AAATAATTCTGGATC     TGTACTATGTACACC TTAA GGTGTACATAGTACC      TTACATGGAGAGAGA 100 214
JJN11_RS12420 NONE
JJN11_RS12425 2579222 .. 2579234 +  -6.9  -4.57073   CAGCGTCTGGTACTC                GCGGG TGC CCTGC                TTTTTCCACGCCATC  79 313
        paaZ 2592624 .. 2592650 + -16.7  -2.58249   CTGATCCCCCTCCAT         CCGGGTAACGT CGCGC ACGTTACCCGG         CTTCTGGCACATCTG 100 37
        tynA 2595063 .. 2595081 +   -16  -5.20333   GGGCAGTGATAAACA             GCCGGGCA TAT TGCCCGGC             TTTTTCTTGTCGGTG 100 32
JJN11_RS12505 2597356 .. 2597387 + -12.2  -2.78384   CACCGTAAACCCACC      AGCCTGCGGGCGGA GCCT TTCGCCCGCAGGGA       TATGGTCACCCGCGG  80 33
JJN11_RS12510 2598580 .. 2598615 +  -8.2  -2.89564   CCTGTGTCGGGTGGC    GGCTGCGCCTTACC CGACCTAC GGTGCGGTGCGGCC     TGTGTCGGGTGGCGG  62 167
        feaR 2601778 .. 2601793 +  -4.7  -3.95456   GATTCCACATCTTTA              TCCAC TTTGAT GTGGA               TTTCATGTTCAATTT  62 400
JJN11_RS12540 2605958 .. 2605970 +  -3.4  -4.08064   AAGCTGAGGACAAAA                TTGC CGGGA GCAA                TTTTGGACAGCGCTT  58 225
        hslJ 2607095 .. 2607106 +  -4.4   -4.7268   AACCACGATTTTCCA                CGTT GTAA AACG                 TTTTGTTCGCTATTT  71 377
        nifJ 2610809 .. 2610825 + -10.8  -4.87803   AGCGAATAACCCGAA              GCCCGG CCTGT CCGGGC              TTTTCTTTACCGATA 100 32
        ompC 2612300 .. 2612311 +  -5.8  -3.41602   ATCGTCGCATTAGGT                CTGG TTTA CCAG                 TTCTGATGAAATGAG  57 8
        ttcA 2614947 .. 2614964 +  -2.5  -4.38313   CGCCCGCTTATTTCA             GCAGACG AACC CGGCAGC              TTTTGCCTTTGATCT  61 78
JJN11_RS12600 2620836 .. 2620847 +  -7.2  -2.89632   CTGGCGGCGTAACTG                CGCC TGCT GGCG                 TCCTCTGTTTTTCAC  57 29
JJN11_RS12605 2621469 .. 2621502 +  -6.7  -3.04274   CGGCTAAAGAGAGCC     GTGACAGGCTGGT GGTTTCAG GCCAGCCTGTCGA      TATAGTTATTAATTG  55 42
JJN11_RS12735 2653786 .. 2653802 +  -3.6  -3.07947   TCACGATATACATCG              TGCGGC TATAC GCCACA              TCTTCCGGGTTGTTA  45 376
        mpaA 2656467 .. 2656482 +  -4.6   -4.4017   GCCAGCGCCAGCGCT              TCGGTG ATAC CGCCGG               TTTTATCCAGCTTAA  67 215
         tpx 2657865 .. 2657880 + -10.4  -5.95286   AAGCGTAACAATAAA              GCCTCC CTGC GGAGGC               TTTTTTATTTTTACT 100 45
        pspF NONE
        sapA NONE
        sapB NONE
        sapC NONE
        sapD NONE
        sapF 2670218 .. 2670234 +  -4.4  -3.29511   CACATGCTATTATCG             CCG-CGT TTTA ACGACGG              TTGTCCAAAAATGAC  50 81
        fabI 2671093 .. 2671114 + -11.5  -3.56594   ATTACCTTCCCGCTC           CGGCGGGGA GGTA TCCCCACCG            TTTCGCCCGCTTTCC  83 45
JJN11_RS12835 NONE
JJN11_RS12840 2674266 .. 2674294 +   -14  -5.86332   ATTGAGTGCTTAAAA       GTCGGTTCACCTC ATTT GAGG-GAACCGAC        TTTTTTTTGCGTTAA 100 43
        pdeR 2676718 .. 2676741 +  -5.2  -2.82352   CAATACCCGCTGGCG          GGCG-CGCAGC ATC GCTCTGACGCC          ATTCATTTTGGGTTG  47 184
JJN11_RS12855 2677842 .. 2677852 +  -8.2   -4.3586   TCAGTTTTCAACTAA                 CGGC GAT GCCG                 TTTTAATATGGATGC  80 67
JJN11_RS12860 2678633 .. 2678655 +   -12   -4.8543   TGCCTGACCCTACTC           TAACGCCCGA ATA TCGGGCGTCA           TTTTTCTGCCCCTTC 100 34
        osmB 2679176 .. 2679200 + -17.3  -4.65933   TCAAAATAAAAACAA          TAAGCCACGGT CTG ACCGTGGCTTA          TTTGTTTTGGCGGTA 100 95
        ribA 2683656 .. 2683682 + -13.7  -4.62054   TAATAAGTAAAAACA         ACAGCCCGGCA ATTTA TGCCGGGCTGA         TTTTCCTTTAGTTCA 100 31
JJN11_RS12925 2691817 .. 2691836 +   -15  -5.07486   TGATTGATGCAAAAA            CGCGAGGC ACTG GCCTCGCG             TTTTTATTCACAGTA 100 34
JJN11_RS12935 NONE
        cobO 2694489 .. 2694517 + -14.7  -5.06103   GGCATCGACTATTAA        CAAAAAACCCGGC CAG GCCGGGTTTTTTA        TTTTTTAGCCGTTGT 100 26
JJN11_RS12975 NONE
        trpD NONE
       trpCF NONE
        trpB NONE
        trpA 2705437 .. 2705461 + -13.6  -3.58269   CGCAGTAAAAGAGTC          GCCGTCTGGT TTTTT ACCAGGCGGC          TTTACGCATAAATTG  91 33
        yedE NONE
        yedF 2707035 .. 2707053 + -11.7    -4.254   CCAGAAATAATAAGA             GGGTGGC GCCAG GCCACCC             TTTCTTAAGTATTAA  91 31
JJN11_RS13010 2707412 .. 2707425 +  -9.5  -4.20868   GCGTAAATAAAAAAA               GGCCC CTCG GGGCC                TTCTTATTTTCAGAA  83 31
JJN11_RS13025 NONE
JJN11_RS13030 2709755 .. 2709777 + -17.8  -5.31072   AAGCAGTAATCCTTC           CGCCAGGCTT GAT AAGCCTGGCG           TTTTTCTTCTGTTCT 100 32
        yciA 2710255 .. 2710272 + -12.7  -5.37865   GCAGGCATAAAAAAA             GCCTCCC GATT GGGAGGC              TTTTTTCATTATTCC 100 31
JJN11_RS13045 2711541 .. 2711558 +  -8.4  -4.95167   TCTAGGATAAAAAAA             GGCTCC GTACCA GGAGCC              TTTTCTTATTAGTTC  88 36
         cls NONE
JJN11_RS13065 2714414 .. 2714429 + -10.4  -5.52096   GCGCGAATAAAAAAA              GGCTGC GATT GCAGCC               TTTTTTATTGCCTTT 100 31
        adhE 2724633 .. 2724646 +  -9.5  -5.77988   TCGCTCAATAAAAAA               CCCGC TCCG GCGGG                TTTTTTTATGTCTCT 100 45
         hns 2726293 .. 2726309 +  -9.4  -5.33866   TAAATATCCGAAAAA              TCCCGC TTAAT GCGGGA              TTTTTTATGCCTTTA 100 46
JJN11_RS13130 NONE
        purU 2731040 .. 2731054 +  -2.9  -2.93572   CTACGGTAACCGAAC               GATTA TTCTT TAATC               CTTTATAAAATGAAT  43 13
JJN11_RS13140 NONE
JJN11_RS13145 NONE
JJN11_RS13150 2731916 .. 2731928 +  -4.1  -3.56262   TTCAATACACTCGGG                CATCT GCT GGATG                TATTTATCCACTTTA  51 354
JJN11_RS13160 2733197 .. 2733220 +  -6.1  -2.66316   CGGATTAGCGACGGG          CGCGCACAAT CTGGT ATT-TGCGCG          TCATGTACTCCACCG  51 33
        narX NONE
        narL 2744797 .. 2744828 +  -5.1  -5.00616   CTACCCCGCAGGGAG      CGGCTTTCAGCCA CTTCGC TGGCGGAGAGTTG       TTTTTTCAGCGGCAC  80 455
        ychN 2757267 .. 2757287 +  -3.1  -4.56597   TCCAGCTTCAAGTTT            GCCTGCCCG ATG CCGATAGGC            TTTTTACAACAACAC  65 81
JJN11_RS13240 2759114 .. 2759159 + -13.6  -4.73912   TTAATGTTAATCCGC TGCCTGAAAGCCGCGTAAAGCGA TGT TCGCT--GCGCG-CTTTCAGGCA TTTTGTCATTTTTGT 100 37
JJN11_RS13245 2759566 .. 2759590 + -15.7  -5.40072   GCCTGATCATTCTTC          GCCCGGTGGCG CAC TGTCACCGGGC          TTTTTTTCAGGCAAA 100 35
        chaA 2762168 .. 2762197 + -16.7  -3.42407   CCGGCAATAAGCGCA       TAAAAAAACCCGC CGAA GCGGGTTTTTTTA        TTAGTTGCTGGTATC 100 109
        lolB NONE
        ispE 2769195 .. 2769211 +  -6.5  -3.03159   GCGCAATCTGAGTTT              CGGTGAC AAC GTCACCC              TGTTCCAGACGTTGC  55 20
         prs 2770290 .. 2770303 +  -9.5  -5.71712   GACGCAGTCAGAAAA               CCCGC TACG GCGGG                TTTTTTTGTCTGCAA 100 44
        dauA 2772383 .. 2772399 +  -3.6  -3.25823   CGGGCGTCAGGTAGC              GCTGCC AGATA GCCAGC              TTGCTCTCGGCGAAG  47 340
         pth 2774373 .. 2774387 + -11.4  -3.16971   AAACGGCTTTTTTGC               CCCGCA GGC TGCGGG               TTACGTGTATAATAG  79 49
        ychF 2775611 .. 2775628 + -11.3  -5.60993   ACTGACCTGAAAAAA             TCCACGC CATG GCGTGGA              TTTTTTTATCAAAGG 100 66
JJN11_RS13340 2777157 .. 2777194 +  -5.5  -2.62613   TAACCCCCAGTAAAA   GAG-CCGCGATCCCGT CTGACCT GCGGGATCGCTGACAC   CTCTTTCACCTGCCC  48 28
JJN11_RS13350 2781171 .. 2781202 +   -16  -2.76055   TCTCTTCTCACGCCG      TCACCGATCCGGTGT GTT GC-CCGGATCGGTGA      TGCTCTCTCTGTTCA 100 41
JJN11_RS13360 NONE
JJN11_RS13365 2782695 .. 2782711 +  -7.9  -4.62085   TAGCTTCCAGCAACA              GGCCCAA CAA TCGGGCC              TTATTTTTTGCAGAT  81 56
JJN11_RS13390 2785836 .. 2785869 + -16.2   -2.8598   CTGCTGAACGTCTGG     GCACATAACCCGGTC AGTAA GACCGGGTT-TGTGC     TGGTTATAGGTGTCT 100 44
JJN11_RS13410 2789509 .. 2789525 +  -2.2   -4.0865   AAGTTTTTTAATGCT              CAGCAT AATAA AGGCTG              TTATCTTTTGTTGAG  55 80
        hpaX 2805285 .. 2805311 + -18.1  -4.86133   CCCTTCCTCTAAAAA         GCCCGGAACAG CAGCC CTGTTCCGGGC         TTTTTCCTCTCTGTC 100 41
JJN11_RS13505 2806510 .. 2806541 +  -7.4  -3.62478   GCCAGTAATATTAAT      CTGGCTAACC CTAAGCCTCTCT GGTTAGCCAG       TTTACGGCTTCGTTA  67 133
JJN11_RS13540 2814400 .. 2814418 + -13.2  -4.51196   CTGCCCATAAAAAAA             CGGCTCTT AAC AAGAGCCG             TTTTATCGGTTTCAG 100 90
JJN11_RS13550 2816031 .. 2816049 +  -3.8  -3.73072   AGGCTTTCAGCTGCA             TCAGACCC ACC GCGTTTGA             TTTACTCACCAGGTT  54 433
        ldcA 2817322 .. 2817345 + -11.8  -2.82681   CCCTTAAGCGGCGGA          TTAACGCCCT GTAA GGGGCGTTAA           TATGATAGGGTTTTA  76 48
JJN11_RS13565 2819133 .. 2819174 +  -9.3  -4.36914   ATGCCGAAGAGTAGG CCGGTTTGCCGGGTGGCGGC TAC GCC-TTACCCGGCCTACGGG TTTTGTAGGCCCGGC  83 27
JJN11_RS13580 2823553 .. 2823568 +    -9  -5.86976   CACCCGGCAAAAAAA              CCTCTC AGAT GAGAGG               TTTTTTATTTTATCG 100 127
        nhaB 2826041 .. 2826070 + -10.7  -3.37975   CGACGCATTAAATGA       GT-CGGCCGGGCGG TCA TTGCCCGGCTGCAC       TTGTGCATGATAAGT  78 30
        dsbB 2826779 .. 2826806 + -15.8  -3.31322   AATAAAGCCGCACAT        TAAAAAACCCGC CTTG GCGGGTTTTTTA         TTATCAGCGGTTGGG 100 96
        minC 2829128 .. 2829140 +  -4.9  -3.29973   ACAACGCTTTGACCG                TTCAA CCG TTGAA                TTGATCCCTTTTTAA  52 9
        minD NONE
        minE 2830271 .. 2830303 +  -2.5  -4.36914   GTGCGTATTGCCGGG      CGGCACGTCGTTTGC CCG GCCTACGGTTTGTCG      TTTTGTAGCCCCGGC  61 43
JJN11_RS13655 2837207 .. 2837225 +  -3.1  -3.18023   TAAGATTATCGCTGC             GGTGTAA GGGCG TTACTCC             TCTTCATCATCCTCA  45 19
        pabB NONE
JJN11_RS13670 2839528 .. 2839543 +  -3.2  -3.14132   CCCTCTTACACTATG              CGAAGT TATT ACATCG               TTACTGGAAACCCGG  46 156
        sdaA 2841068 .. 2841091 +  -9.5  -3.05963   TACACTAGCCAGGTT          GCCACGGGC ATCTGC GCCAGTGGC           TCTTCGGGTGACCGT  69 148
JJN11_RS13680 2842712 .. 2842726 +  -4.2  -2.72639   CCGTAATTACTCTTC               TTCGTC GTG GGCGGA               CTGTTCTTTAACAAT  44 35
        manX NONE
JJN11_RS13695 NONE
JJN11_RS13700 2847441 .. 2847460 + -12.1  -5.60993   TTTTTGTGAATACAC            CGGGGGC ATGAAC GCCCCCG             TTTTTTTATCCGGAG 100 43
JJN11_RS13705 2847989 .. 2848004 +  -6.2  -3.61894   CTTTTCACAGTGTTA              TATAGC CAAA GCTATA               TTATTACGCGACATT  61 75
        mntP 2849230 .. 2849251 +  -8.7  -2.85947   CCTTTGCAGGGGGCG           TAGATGCGG ACTA CCGCATCCA            TACTGTTCTCTTCAA  58 365
JJN11_RS13750 2854529 .. 2854546 +  -8.3  -5.61596   CCTTGCATAAAAAAA             CGCCGCC ATAA GGCCGCG              TTTTTTTATCGCGCT 100 43
JJN11_RS13760 2856916 .. 2856933 + -12.7   -5.4505   ACAGCCATAAAAAAA             GCGCGTC TTTG GACGCGC              TTTTTTATTAGCAAA 100 31
        yebS NONE
JJN11_RS13790 2865405 .. 2865430 + -16.2   -3.9712   CCACGATAACCCCTA         CGCTCCGGTG TCAACC CACCGGAGCG          TTTGTGGTACACTGC 100 32
        rsmF 2866911 .. 2866940 +  -2.1  -4.46404   CGGTAACGGTGAAAC       GCGCTAAAAAAAG CACT TTTTTACTGGCGC        TTTTGCTCTTCATTG  61 19
JJN11_RS13800 2867272 .. 2867287 + -11.8  -4.29119   CTGATTCAAAGAGAA              CCCGCC CGCA GGCGGG               TTATTTATTCTCATA  91 37
JJN11_RS13805 2867719 .. 2867741 +    -4  -4.07618   CATCAGTTCCCGCAA           GTGTGCCCTG TCC CAGAGGACGC           TTTGCTTGTTGACCG  60 188
JJN11_RS13815 2869771 .. 2869786 +  -3.2   -2.9665   TTGACTACCCTGGCA              GAATCG CTAC CGATCC               GTTTGTAAGATTTAA  45 471
JJN11_RS13820 NONE
JJN11_RS13825 2872533 .. 2872556 + -11.7  -4.21194   CTCAGATAAAAACAG          GCGGGCCCT GATTTG AGGGTCCGC           TTTTCGCTCATAGCG  91 32
JJN11_RS13850 2875966 .. 2875988 +  -7.6  -3.41761   TATCTAATCGTGGGG           GCAGGTCAGT GCT ACCGTCCTGC           TGTTAATTTTCCCAT  64 47
JJN11_RS13885 2885874 .. 2885891 + -10.5  -4.34402   TTGCTACTAACAGTT             GGGCGGC TTCG GTCGCCC              TTTTAATATCAAAAG  90 224
JJN11_RS13975 NONE
JJN11_RS13980 2901989 .. 2902004 +  -7.5  -3.33711   TTCTGCGCTGTCCGC              CCGGG CCTTTT CCCGG               TTGGCTTTATCGCTG  62 431
JJN11_RS14095 NONE
JJN11_RS14100 NONE
JJN11_RS14105 2915194 .. 2915211 +  -9.8  -5.26316   GTCTTAACTAACCAA             CCCGGC CACCGT GCCGGG              TTTTTTATACCCTCC 100 30
JJN11_RS14110 NONE
JJN11_RS14115 2916035 .. 2916049 +  -4.2  -3.08679   ACCCAATGGGCGCTA               TCTCTG GCC CGGGGA               TCTTACATCCAAAAA  47 122
JJN11_RS14120 NONE
JJN11_RS14125 NONE
JJN11_RS14130 NONE
JJN11_RS14135 NONE
JJN11_RS14140 2922483 .. 2922511 +  -5.3   -5.7946   CCTTAAACATAAAAA       CCGCAATGCTTC CGAAGA GAAGCCT-GCGG        TTTTTTTATTGGAAG 100 295
JJN11_RS14160 2924542 .. 2924560 +  -4.6  -2.97436   ATGCCAGGATAGAAA             TCCATG TTATATT CATGGA             CTTTATGAATCTCTG  49 74
JJN11_RS14165 NONE
        exoX 2926257 .. 2926270 +  -8.1  -2.54723   TAGTAGGTCTCATCC               TGGGG ATTG CCCCA                CTCTTCATATTCACC  53 338
        purT 2930514 .. 2930529 + -11.8  -4.98522   GCAGGATAAAAAAAA              CGGGCC GATT GGCCCG               TTTTTGTATGGCATT 100 32
JJN11_RS14210 2936134 .. 2936146 +  -3.4  -4.07568   GAATCATCGTTCACG                CAAC ACCAG GTTG                TTTTAGACAACGGAG  58 115
         pyk 2937700 .. 2937717 + -12.7  -5.80003   CGGGCAATAAAAAAA             TCCCCCG TTTC CGGGGGA              TTTTTTATTTCTTCG 100 115
        znuC NONE
        znuB 2943069 .. 2943083 +  -2.7  -2.78816   CGTTCAGCATATCCA               GCGCC TGGGC GGCGA               TCTCATGCGAAATCG  39 387
JJN11_RS14275 2948957 .. 2948969 +  -3.3  -3.25166   CGCCCGCCACTTTAA                TTGCG TGA CGCGG                TAATTTTTAAAATCA  46 111
JJN11_RS14285 2949674 .. 2949694 +  -3.9  -4.30576   ATAAGCTTATTTGCC            GTATTCCAG CGA CGGGAAAAC            TTTTCATACTCGGCA  65 235
JJN11_RS14510 2984895 .. 2984908 +  -8.1  -6.31682   CCCACACATACAAAA               GAGCC TGAG GGCTC                TTTTTTTTTGCTTTT 100 50
JJN11_RS14515 2985362 .. 2985374 +  -6.3  -2.54371   TGTAAAGGACGGGAA                TCATG GCG CATGA                AATTTCTTTAGAGCA  52 13
JJN11_RS14520 2985688 .. 2985710 +  -6.3  -3.85698   TAATGCGCAGCGCCG           GATATTGGC ACATC GCCAATCTC           TTTCTAAAGAAAGCA  66 152
JJN11_RS14525 NONE
JJN11_RS14530 NONE
JJN11_RS14535 NONE
JJN11_RS14540 NONE
JJN11_RS14545 NONE
JJN11_RS14550 NONE
JJN11_RS14555 NONE
JJN11_RS14560 NONE
JJN11_RS14565 NONE
JJN11_RS14570 NONE
JJN11_RS14575 NONE
        cmoA NONE
        cmoB 2993560 .. 2993586 +  -2.1  -4.09739   TGACCCGAAGTCAGC         ACGCGCGCAAC CCCCA GTTCCGCGAGA         TTTTCAAAGGCTTGC  56 487
        argS 2996598 .. 2996627 + -20.9  -3.86015   CGGTTATCGCAATAA       CACAAAACCCGGC GCAA GCCGGGTTTTGTG        TTTGTAGCCCCGGTA 100 77
        uspC 3023447 .. 3023480 +   -14  -2.79302   TTGATGTGCTTTTAA     TTCCACTCGGCG CAGAATAAAA CGCCGAGTGGAA      TATAATCAGGCTAAT  88 6
JJN11_RS14760 3031362 .. 3031383 + -14.5  -5.00616   TGCGCGTTAACTGAA           TTACCCGGC CTGT GCCGGGTAA            TTTTTTGCAAAAGAG 100 44
JJN11_RS14775 3033582 .. 3033597 + -10.4  -4.91459   AGAGGCATAAAAAAA              GCCAGC GCAA GCTGGC               TTTTTATCGGTGTTA 100 31
JJN11_RS14785 3034892 .. 3034923 +   -11  -3.28712   TCGGCTTATTACTAA      TTTCGTTGCCAGCT TTAG AGCTGGCAATAAAA       TTCTGAACACGAAAC  78 26
        ftnA 3035601 .. 3035624 + -13.8  -2.82895   CCAAAATTAATATTC          ATGCGGCGCC ATCT GGCGCCGCAA           ATTATTAATGGCGGC  85 31
        tyrP 3037806 .. 3037819 +  -3.7  -3.13403   GCCCGCGCAAGCGAA               ACGCC GCCG GGCGC                TGTTAATGCAGACAG  46 93
JJN11_RS14835 3043796 .. 3043831 + -14.8  -2.87564   TAACCCGTTGGTTCT    GCACGCCC-TGCTGCGA TCG TCGCAATACGGGCGTGC    TGTGTGAGCCCCTGA  90 38
JJN11_RS14840 NONE
JJN11_RS14845 NONE
JJN11_RS14850 3047615 .. 3047628 +  -8.1   -3.5393   TCAGGCACAAAAAAA               CCACC TTTC GGTGG                TTTCACGACACTGCT  66 368
JJN11_RS14890 3051921 .. 3051945 + -14.3  -3.81951   TCAATAAAACAAAAA          CGGCTGAAAGC AGT GCATTCAGCCG          TTTACTCGTCTGCCA 100 34
        fliD NONE
        fliS NONE
        fliT 3065100 .. 3065110 +  -8.2  -3.28712   ATACTCCAGAGGTCA                 GCCG AAA CGGC                 TTCTGGAGCACGGAA  66 53
        amyA 3066667 .. 3066686 +    -2   -4.7373   TGCAAATCCCTTAAG            GCAGCTTG CTCT CAAGCGGA             TTTTTACTCAGGTAA  67 81
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ NONE
        fliK 3074091 .. 3074104 +  -2.3  -2.83449   TCGCCTAAACCTAAA               CGCCA GAGG TAGCG                TGATTATCCCCGTCT  40 33
        fliL NONE
        fliM NONE
        fliN NONE
        fliO NONE
        fliP NONE
        fliQ 3077454 .. 3077476 +  -2.6  -2.79831   CAATCTGTTCACTAA           CCTGCCCTAT ATC ATCGGCTAGG           TATGCTGCAAGTTAC  42 4
        fliR NONE
        rcsA 3079209 .. 3079227 + -13.2  -4.98531   TGCCACGTAAACCGA             TCTCTGGC TAT GCCAGAGA             TTTTTCATTTCGGCC 100 54
        yodD 3080067 .. 3080077 +  -2.6  -3.78934   TTTTGCAGAATTTTA                 TTTT AAG AAAA                 TTCTTATAAAAGACC  51 277
JJN11_RS15050 3081035 .. 3081066 +   -10  -5.40072   CTCTGCGCTGCTGAC      GCCAATCGACACGC TGAC GCGCGTCGTCTGGC       TTTTTTTCACCAGGA 100 133
        yedA 3084998 .. 3085034 + -17.4  -3.02144   GCGAATGCCCTGCGT   GTCGATCTGC-GCGGCG TTAC CGCCGCTGCAGATCCAC    TCTTCCAGCCGCTCC  91 45
JJN11_RS15095 3089651 .. 3089668 + -12.7  -5.07011   GCCAAACGCTCTTAA             GCCCGCT GCAA AGCGGGC              TTTTTACTTTCTGTC 100 49
JJN11_RS15100 3091371 .. 3091381 +  -3.2   -4.5774   GTGAAAGGAATAGCG                 CGTG ATA CATG                 TTTTAATTGTTGATG  66 21
        dcuR 3092305 .. 3092321 +  -8.7  -2.52676   AGAGTTGCCCCTACT              CCGGTTT TCG AGACCGG              TCCGTTCAGCCGCTC  57 233
        mtfA 3093326 .. 3093337 +  -4.4  -3.35278   CCATTAATATGCGCC                TCGT TCAC ACGA                 TTCCTCTGTAGTTCA  50 113
JJN11_RS15120 3093419 .. 3093456 + -18.7   -2.7169   CAGAGGAGCCAAATT   TAAGAAGCCCGCTTAAG GAAA CTTAAGCGGGCTTTTTG    CTATTTCTCACCGTT 100 30
JJN11_RS15135 3095864 .. 3095901 + -10.7  -4.83169   CAGAGGAGCCAAATT   TAAGAAGCCTGCTTAAG GAAA CTTATGCGGGCTTTTTG    TTTTTGTGCACGGGT 100 30
        shiA NONE
JJN11_RS15170 NONE
JJN11_RS15175 3106708 .. 3106727 + -12.2  -4.35524   CACAAAGACCAGAAA            CGGTAACC TTCG GGTTACCG             TTTTCGGTTTACCGA  95 43
JJN11_RS15200 3112249 .. 3112266 + -11.3   -5.1417   AGCCACATTTAAAAA             GCCTGCT TTCG AGCAGGC              TTTTTGCTTTTCTGA 100 36
        sbcB 3117427 .. 3117447 + -14.7  -5.76949   TGAGAAAGCAAAAAA            GCCGGAGGC GAT GTCTCCGGC            TTTTTTTTGCCCGTC 100 43
        hisL 3121218 .. 3121244 + -22.4  -5.75945   TGAACGCAAGAAAAA         GCCCCCGGAAGA TCA TCTTCCGGGGGC         TTTTTTTTGGACCGT 100 66
        hisG NONE
        hisD NONE
        hisC NONE
        hisB NONE
        hisH NONE
        hisA NONE
        hisF NONE
       hisIE 3128325 .. 3128338 +  -9.5  -5.52909   GCACAAATAAAAAAA               CCGGG GAAA CCCGG                TTTTTTTAGCTGTTA 100 31
JJN11_RS15295 3130537 .. 3130556 + -12.8  -5.11613   AAGGTATAAGAAAAA            GCCCGGCG ATAA TGCCGGGC             TTTTTTAACTGCTGT 100 32
JJN11_RS15460 3169379 .. 3169414 +  -5.3  -2.90194   CTTCGCCAAGCCAGC    CCTCCAGCACCCG AACTTTGAAG CGGGTGTCGGCGG     TCTCCTTAACCAGAT  48 289
JJN11_RS15480 3176225 .. 3176237 +  -4.8  -3.75461   GGCCAATTCCGGGCC                GGGT CTGCA ACCC                TTTAATCGCGCTTTC  56 229
        yegD NONE
JJN11_RS15495 NONE
JJN11_RS15500 3182917 .. 3182938 +  -2.2  -2.59569   ACGTGAAGAAGAGGA           GGCGTAAG TGAAGT TTTTCGCC            CTCTTCATTTACCGC  39 19
        mdtC NONE
JJN11_RS15510 NONE
        baeS NONE
        baeR 3189632 .. 3189648 +  -7.9  -3.21668   CCTGATTTTGCCAGT              GCTCCAG CTG CTGGCGC              TGTTCGTCTGATAAT  59 119
        ycgZ 3192283 .. 3192331 +  -3.2  -2.82623   ACTGTCGCCACAGAC TGACTTTAT-GCCGCTTCTCTCCT GGC AGGA-AGATGCGGCGACAGAGACG TAGTTATGAACAGAA  43 109
JJN11_RS15540 NONE
JJN11_RS15545 3192992 .. 3193019 + -11.3    -3.767   CCACGCCTGAGCTGA        TGCCGACGGTA CTGTCC TGCCGTCGGCG         TTTACTCACTCAATG  81 45
        yegQ 3194639 .. 3194670 + -10.3  -5.71712   CCAGGAACCACCTCC      TTAGCCTGAGTAA TCTCCC TTACGCAGGCTAA       TTTTTTTGTCTAAAA 100 158
        yegS 3196236 .. 3196268 +  -3.2  -4.37092   TTCTGCGCTGAGTTG     CCCGGCGGCGCTGCG CTTG CGC-GAGTCTACGGG      TTTTGTAGGCCGGGT  63 30
JJN11_RS15605 3206709 .. 3206740 +  -7.3  -2.57423   AAACCCAAAAACAAC      GAAAGGCCAGACA CTGTAA TGGCTGACCTTTC       TAAATTAATCAATAT  56 325
JJN11_RS15610 3207921 .. 3207932 +  -2.2  -4.84359   AACCAAATATTAGAT                CGTA ACGT TGCG                 TTTTTCTCGCGGTAC  70 269
JJN11_RS15620 NONE
JJN11_RS15625 NONE
JJN11_RS15630 3210343 .. 3210376 +  -6.7  -4.55697   CTCAATGATTGCTGT     GTTAAAAAAGGTCGC GTAA GCGGCCTTTTGAGAC      TTTATTTCTGAGGGT  77 33
JJN11_RS15640 NONE
JJN11_RS15645 NONE
JJN11_RS15650 3214660 .. 3214681 +  -4.4    -4.788   CCCTTTTATAAAAAA           GAAGAGAC CAGAAT GCCTCTTC            TTTTTAAATTAATTT  71 59
JJN11_RS15660 3217513 .. 3217526 +  -3.1  -5.66868   ATTGGCCGCGTTTTT               TGAGG CCCT TCTCA                TTTTTTTCATTAATT  85 196
JJN11_RS15665 3218948 .. 3218962 +  -3.5  -3.53012   AGGCGCTGCTTGCTG              C-GGGC GTTC GCCCAG               TTTAACCGGAGACAA  50 6
JJN11_RS15670 3220462 .. 3220483 + -17.3  -3.24058   AAGTAAGTTGTCCCA           CCCGGCAGC GTTC GCTGCCGGG            TCTCTCTTTCGTTAT 100 35
JJN11_RS15690 3225122 .. 3225135 +  -9.5  -3.19192   CGTTAATCGCTTAAT               GCGCC AGGT GGCGC                TTCGCTTACCTGGCC  70 35
        metG 3228511 .. 3228529 + -14.6  -5.68039   GAAATAAATAAAAAA             GCCGGAGA TAA TCTCCGGC             TTTTTTTATGCCTTT 100 34
        mlrA NONE
JJN11_RS15725 3233062 .. 3233097 +  -4.4  -2.62184   CCGCAATGGCCAGTA    CCGCCACGGGCGGGAA GGTC TGCCCGACGGCGGCGA     TGGTCTCCACCAGCG  43 434
         dld 3245272 .. 3245293 + -13.1  -5.52384   GAGTAGCCACGGGTC           GCCAGAGAA ACGT TTCTCTGGC            TTTTTTTGATGAGGA 100 81
JJN11_RS15775 3245990 .. 3246006 +  -7.2   -5.2197   CAATCGTTCTGCGCC              GTCGCC ATCTG GGCGGC              TTTTTGCTTTTTGTA  91 141
JJN11_RS15790 3248650 .. 3248660 +  -8.2  -3.41073   TCGACTTGGTCAGGC                 CGCC GAG GGCG                 TGTTTGGCTGAGGTG  61 310
JJN11_RS15825 NONE
JJN11_RS15830 3257411 .. 3257426 +  -5.4  -4.82154   TGGTGGGCTAAAATT              TGCGACG CGT CG-CGCA              TTTTTAATCTGAGTT  75 30
         cdd 3258516 .. 3258527 +  -4.4  -2.84051   GGTAAAGTAGCCTGA                GTGA AATT TCAC                 CTTTGGTAAGAGTCA  45 122
        sanA 3259347 .. 3259361 +  -8.5  -5.14563   CCGGGCATAAAAAAA               CCCGC ACAAG GCGGG               TTTTTTGCTAACCGA  93 111
        fghA 3268603 .. 3268628 + -12.5  -2.73124   CACACCAGCCCTTAG         GCCGGGCAAGCG CAG CGCC-GCCCGGC         GTTTCAACCATCAGA  78 90
JJN11_RS15900 3274605 .. 3274648 + -12.5   -2.7083   AACCGCTGTAGCCTT ATCCTGTTAACCCGCTATC ATATGC GTTTGCGGGTTAACAGGAG TCCCTTTATGAAATA  78 40
         nfo NONE
JJN11_RS15910 3277090 .. 3277108 +  -5.2   -3.3422   AAAGGCCATTACCAC             CGTCGC AACCCCG GCGGCG             ATTTTTAACCCGGTC  53 523
        setB 3285526 .. 3285550 +    -5  -3.05224   CAGGCCAGCACACAC         TTTCGGGCGCG AGCT CGAGCC-GAAA          ATTTTGCAGCGCTGT  47 121
        yeiP 3286459 .. 3286494 + -15.7  -3.14587   TACGCTTACCGGGCC    TACAAAAAAACCGGC CATTGA GCCGGTTTTTTTGTG     TCTGCTTTTGTAGGC 100 67
JJN11_RS15965 3289388 .. 3289400 +  -7.7  -2.85197   GCGCCAGGCGATTAT                CGACA CGC TGTCG                CTTTAACCTTTATTG  59 7
JJN11_RS15970 3290505 .. 3290527 +  -4.9  -3.23899   AAGCTTCGTTTAAGT          TCGGGG-AAC TAAC GTTGCCCTGA           TTGAATTACTTACGG  50 14
JJN11_RS15975 3291282 .. 3291311 + -10.8   -2.7464   AGAAATTAACAATAA       CCATCAGGGATC ATTACC GATCCCTGATAG        ATTTCCCCCTCGATT  72 32
        mepS 3292294 .. 3292311 + -11.3  -6.22802   ACAGCATGGAAAAAA             GCACTGC TATG GCAGTGC              TTTTTTTTTATCGCA 100 70
JJN11_RS15985 3294058 .. 3294074 +  -2.9  -2.66692   GAGAAGGAAAACGTA              GCGTAAT GAT AGTGCGC              ATTGTGGTGCTGATG  41 96
JJN11_RS15990 NONE
JJN11_RS15995 NONE
JJN11_RS16000 NONE
        yejF 3300052 .. 3300062 +  -3.2  -4.60924   CACTATTCATGGGTG                 CAGG GGC CTTG                 TTTTTCAGGGCTTTC  66 489
JJN11_RS16025 3304176 .. 3304203 +    -4  -5.24129   TGAGGCAGAACACTC        ACCTGTTGCTGG GTCG CCTGTAGCAGGA         TTTTTTATACAGAGA  80 101
        rplY 3304533 .. 3304547 + -12.8  -5.61596   CTTGTCGAAAAAAAA               CCCCGC ATT GCGGGG               TTTTTTTATGGCCGT 100 48
JJN11_RS16040 NONE
        yejM NONE
JJN11_RS16050 3307879 .. 3307895 +    -8  -5.64274   TTTCCCCAAAAAAAA              CCAACC TTCGC GGTTGG              TTTTTTTATGCCTGC 100 44
         eco 3311689 .. 3311707 + -11.7   -4.8048   GCGCTAATAAAAAAA             GCCGGGT AAATC ACCCGGC             TTTTTAATATCAGAG 100 34
        rcsD NONE
        rcsB 3326381 .. 3326394 +  -8.1  -5.60993   GGCAATAATAAAAAA               GCCCA TTTC TGGGC                TTTTTTTATCCCCGC 100 117
        ubiG 3332913 .. 3332933 + -11.9  -4.56775   TCTTTTTCTGACGAA            TGCGCAGCA GTT TGTTGCGCA            TTTTTGACAGCCCGT 100 45
        nrdA 3335509 .. 3335544 +  -2.4  -3.51557   ATGTAAGATTTAATG    TAAATGCCGGGTG-GCG CTA CGCTTACCCGGCCTACG    ATTTTGTTTGCCCGA  47 28
        nrdB NONE
        yfaE 3336975 .. 3336988 +  -5.9  -3.17075   GATCGAGATGTGATT               GTGCC GGGT GGCGC                TTCGCTTACCCGGCC  55 28
        glpA NONE
        glpB NONE
        glpC 3343775 .. 3343786 +  -7.2  -3.14132   GCCGGGGCCGCCGCC                CCGG CAAA CCGG                 TTACTCAACGAACAG  60 46
JJN11_RS16200 NONE
JJN11_RS16205 3349367 .. 3349379 +  -4.7  -2.60244   GCTGGATGTGACGCT                GCCGC TTG GCGCC                TGGCTTAATTAACGG  46 1
JJN11_RS16210 3350958 .. 3350981 +  -9.6  -5.33848   CACTGTGTTAACGCC          TGGCGGGA GATCTTAA TCCCGCCA           TTTTTTAGTTCTGCT 100 66
         rnz 3359834 .. 3359844 +  -3.2  -3.09823   ATTTTGCTACCGTGC                 GCGT TTA ATGC                 TCTGGTTTTCCCCGA  46 18
JJN11_RS16260 3360976 .. 3361018 + -17.3  -4.65895   AAGCGCAGCGCCACC CGGCA-ATAAAAAAACCCGC CGAA GCGGGTTTTTTTTTCTGCCG TTTTTACATCAGCGG 100 89
JJN11_RS16335 3379702 .. 3379724 + -19.2  -3.70902   ATCAGTAAACGATAA           TCGGGCTGCC ACA GGCAGCCCGA           TTTGCATCTCACCGC 100 33
        yfbR 3380388 .. 3380423 +    -6  -2.71712   GATTCGCCGTTGTGA    GTTATGCCCGGCG-GCG CTT CGCTTGCCGGGCCTACG    GTTTCCAGGCAGCAA  51 26
        ackA 3385627 .. 3385655 + -14.5  -4.07568   TCTGACTGCCTGATT        CCCCACCGCCAGC AAT GCTGGCGGTGCTG        TTTTGAAGCCCGCCC 100 28
         pta 3387860 .. 3387877 + -12.7  -5.55769   TGCCAAACGTAAAAA             GGCGACC CCAG GGTCGCC              TTTTTTATTATCACC 100 46
        yfcG NONE
        folX NONE
JJN11_RS16400 NONE
JJN11_RS16405 3392405 .. 3392442 +  -6.9  -4.37092   GGAGGTAAGTGCGGC   CTGAATGCCGGGCGGCAC TGC GT-TTGCCCGGCCTACGG   TTTTGTAGGCCCGGT  74 22
         flk 3407913 .. 3407942 + -14.9  -3.57561   GGCGTAGCCCCCCAG       CGCCGTGCCCCGC ACCT GCGGGGCAACGCG        TTTAACCACTTCAAC  88 278
        mnmC 3412865 .. 3412882 +  -9.9  -2.57931   GACAATACGGTCTGG             CTCGAAG TCGC CTTCGAG              ATTGTCGCAGCTGAC  60 514
        smrB 3417685 .. 3417726 +  -9.4   -4.1899   CCGCCTGAGCTCCCC TGAGAGGCAGGCGGGTGGC TGGAT GCTACCCGCCTGGGTC-CG TTTTACATCAGATAG  80 23
        fadL 3424034 .. 3424062 + -10.4  -5.45652   AATCACGCAGGGATA        AAAAAGGTGAGC CTCGC GCTCACCTTTTC        TTTTTTATTCCGCAT 100 39
JJN11_RS16570 3426088 .. 3426136 +  -6.1  -3.93638   ACTTTAAGCAGTCAG GCGGTCACGCGCTTAACG-CATT GTATA AATGACGTTATACTCGTG-CCGC TTTGTCCCCTTAGTT  64 49
JJN11_RS16575 3426244 .. 3426260 +  -3.7  -4.21607   TTACCATTTTTTCCC              GCAACTT CGT AAGTTAC              TTTCTGTTCAATAGC  60 55
JJN11_RS16580 3426848 .. 3426872 +  -3.4  -3.74519   GACTCCAACCGGTTC          GCCACAGCGC CCAGC GTGCTGCGTC          TTTCATCAACCTGTT  52 277
JJN11_RS16590 NONE
JJN11_RS16595 3429869 .. 3429891 + -14.9  -3.95555   GTGGTAACACTTAAA           GGCCACCTC CCGGC GAGGTGGCC           TTTCTCCATACTTAT 100 34
JJN11_RS16620 NONE
JJN11_RS16650 NONE
JJN11_RS16655 NONE
JJN11_RS16660 NONE
JJN11_RS16665 NONE
        lpxP 3452567 .. 3452591 + -14.5  -4.19258   TTTAACCCCGTTGAA          GGTTAGTTTCT TTT AGAAACTAACC          TTTTCAATCACCTGT 100 36
JJN11_RS16680 NONE
JJN11_RS16685 3457604 .. 3457618 +  -2.8  -3.75657   CGCGCGCAGCTCTTC               GAGG ATAATGC CCTC               TTCTTCGCTGTTTGG  52 511
JJN11_RS16695 3459778 .. 3459797 +  -8.6  -2.71364   GCGTCCAGTTCCACA            GCGCTATG TCGT TATAGCGC             TGGTTCGGACCATGA  58 238
        mgrA 3462462 .. 3462477 +  -7.5  -3.39529   TTAAAGCGATTATCC              GGGGC TTTACC GCCCC               TTAATATTGCGTTAA  62 83
JJN11_RS16710 3462885 .. 3462900 + -11.8   -5.0538   CACTGATACGAAAAA              GGCGCC TTCC GGCGCC               TTTTTTACAATCCCA 100 35
JJN11_RS16720 3465691 .. 3465708 +  -9.8  -5.92337   ATCAGCATAAAAAAA             CCGGGG ATAACA CCCCGG              TTTTTTTTCGTCTGT 100 40
JJN11_RS16740 NONE
JJN11_RS16745 3469287 .. 3469314 + -12.8   -5.1925   TCAGTCAGCGCAATA        AAAAACGGCAGG GAAA CCTGCCGTTTTA         TTTTTTACGTTCTGG 100 25
JJN11_RS16755 NONE
JJN11_RS16760 NONE
JJN11_RS16765 NONE
JJN11_RS16770 3471405 .. 3471435 + -16.3  -2.91735   GCACGACCCACCAAT       GTAAAAAGGCGCC CTAAA GGCGCCTTTTTGC       TATATGCGATATTAA 100 28
JJN11_RS16775 3471559 .. 3471589 + -16.3  -2.91735   GCACGACCCACCAAT       GTAAAAAGGCGCC CTAAA GGCGCCTTTTTGC       TATCTGCGATATTAA 100 28
JJN11_RS16780 3472232 .. 3472244 +  -4.7  -2.75481   AACGGGAGCGCCAGC                GCGGG CAG CACGC                TAATTCCGATTCCGG  44 227
JJN11_RS16790 3474062 .. 3474085 + -12.4  -3.39521   TTAAGGACGTCTCAG          GGGCTGAACC AGCT GGGTCAGCCC           TTCGGTTTTAATCAG  85 37
        cysZ 3478364 .. 3478383 + -12.8  -3.69663   AATAAGTTAAAAAGA            GGGGTGGC TTAT GCCGCCCC             TTATTCCATACTGAT  90 36
        cysK 3479508 .. 3479523 + -10.4  -5.26316   ATATCGCGTAAAAAA              GCACCC AACT GGGTGC               TTTTTTGTGGCCTGC 100 54
        ptsH NONE
        ptsI NONE
         crr 3482456 .. 3482473 + -12.7  -5.38054   GACCGCACAGAAAAA             TGGCGCC TTCG GGCGCCA              TTTTTGTTTGTCAGA 100 46
        amiA NONE
        hemF 3493203 .. 3493221 + -10.2  -4.07568   GCGCGCTCGCGCACC             AGCGCCAG CGT CTGGCGCA             TTTTGCAGGCGGCAG  80 414
         tal NONE
         tkt 3498470 .. 3498495 + -11.1  -3.06837   TAACGTCATCCGTGG         GCCGGGTTAGCG CAG CGCCA-CCCGGC         ATTTTAGCGCGTTAT  74 83
        narQ 3504252 .. 3504267 +  -4.8  -3.22499   GCGGAAAAAGCGCAT              GATAAT TTAC ATTATC               TCCTTTATTTCTCCA  50 115
        acrD 3507494 .. 3507512 +  -7.3  -5.47431   CTTGATAATAAAAAA             GGCGTCC TTACC GGCCGCC             TTTTTTGTGTGTTAA  93 44
JJN11_RS16940 NONE
        dapE NONE
JJN11_RS16950 3509751 .. 3509774 + -18.2  -3.32844   AGAAGTAATGCCTGC          CCCTCTCCCC CGGC GGGGAGAGGG           TTATCCGCTAAAAGA 100 33
JJN11_RS16985 NONE
         bcp 3517483 .. 3517507 +  -2.1   -3.9122   CTGGAATGGGTGAAA         GCGAA-CGCC TGATTT GGCTCTTCGC          TTGTTTGGCCGGGTG  52 14
        bepA NONE
        arsC 3520917 .. 3520933 +    -8  -3.71284   GTAACCGCGCCCGCA              GCTGCA AAGCC TGCAGC              TTATCTTCATCGGAA  66 234
        purM NONE
        purN 3527167 .. 3527209 +  -3.4  -2.52543   CGCCGTTACCCCCGC AAG-GTCACGCGGCGGAAG AGTAAA CTTTTGCCGGGTGGCGCTA TCGCTTACCCGGCCT  42 3
        ppk1 NONE
         ppx 3531105 .. 3531118 +  -4.5  -3.58343   CGCTTCAGCCGCATG               GCGGA TCTC TTCGC                TTTCAACATACTCCG  53 142
JJN11_RS17055 3533810 .. 3533820 +  -2.6  -3.93744   TTGGTTTTTATTGGT                 TAAT TTA ATTA                 TTCTGTTGTTTGTAA  54 45
JJN11_RS17065 3536119 .. 3536133 +  -8.5  -2.64616   TACCGACGATCTGCT               CCGCC ATCCC GGCGG               TCATATCGGTGGCAA  57 162
JJN11_RS17075 NONE
JJN11_RS17080 3537652 .. 3537662 +  -8.2  -2.72745   GAACAACACCCTGTC                 CGGC ACC GCCG                 ATATTTATCGCTGAG  61 1
JJN11_RS17085 3538448 .. 3538464 + -13.7  -3.65294   GGCCAGCGAAAAAAA              GCCCGCA CGA TGCGGGC              TTGATTTATATGCGC  93 41
        xseA 3543477 .. 3543490 +  -6.7  -3.53811   CCGCGATAAACCCCG               CGCAT GCCG ATGCG                TTTCGCCAGGCTGCC  58 368
JJN11_RS17110 NONE
JJN11_RS17115 3546065 .. 3546085 +  -5.3  -3.22114   ATTTTAACACGATGC            GCTCAGTGG GGG CCACGTAGC            TGTTGCTGTAATGTC  52 294
JJN11_RS17185 NONE
JJN11_RS17190 3568688 .. 3568715 +   -10  -2.67316   TTGAACGTGGTTCCC        TTGTCGGTGT CAGAAAAA ACACCGACAA         TCCATTATTGGATTC  66 56
        sseA NONE
JJN11_RS17200 3570606 .. 3570620 +  -7.1  -2.87501   CCAATCAGCAGTACC               GGCTG TTCGT CAGCC               TGCTCTTTGATGGAG  53 269
        suhB 3580073 .. 3580101 + -13.9  -4.26903   AAGCGTTAATCTCAG        CAGGCGGGTGAAG ATC TTTCACCCGCCTC        TTTTCCTGCCCTGCC 100 32
        csiE 3584203 .. 3584236 +  -6.5  -2.52464   CCCCCCATCGCCACG     GCGGAGTAGACCGCC TGCA GGCGGATCACGTCGC      TGCCTTCGCGCGCCG  48 164
JJN11_RS17305 3592247 .. 3592262 +  -3.2  -3.85698   GGGGGGGAATTTAAA              TCATCC TGAT GGCTGA               TTTATGGCGAAAAGC  55 60
JJN11_RS17310 3592775 .. 3592790 + -11.8  -4.27117   GTTAGCCATAAAAAA              GGCCGC TTGC GCGGCC               TTTCTGTTCTGCGAG  91 36
        hmpA 3595569 .. 3595586 + -12.7  -5.75342   GCTGTAATGCAAAAA             GCCCCTC AGTA GAGGGGC              TTTTTTTTGCCCGGC 100 34
        mltF 3606233 .. 3606254 + -10.9  -3.20494   GGCACGTTGGGCAAG           CTGGA-GCGC ATG GCGCATCCAG           TATTCATGATTAAGT  76 369
JJN11_RS17375 NONE
JJN11_RS17380 3610621 .. 3610645 +    -7  -3.54741   CTGCCAGATTTAGCG          CCTCGCCCCA CAGCC TGAGGCGCGG          TTTACCCAGCTCATC  60 120
        nadB 3621979 .. 3622018 +  -8.4  -2.73771   CTCTCCCTCTTTCGG  CGACAGC-GCCAGCAGCAC CCG GTGCGGCAGCCTGCCGTCG  GTTTCCGCAATATCG  58 118
        srmB 3624077 .. 3624094 + -12.7  -5.76633   AAGAGTAATAAAAAA             GCCGGGT TCTA ACCCGGC              TTTTTTTATCTGTAC 100 33
         ung 3625645 .. 3625666 +  -6.5  -3.97368   GCCAGCAGAACGCCG           GTCGCAACG GATA CGTTGAGGC            TTTCTACATTGCCGG  66 162
        trxC 3627337 .. 3627364 +  -3.2  -5.26316   GGCACGTAACTTGTG        CCCCGCCCTCGC CTCT GCGAGAATGGCG         TTTTTTCTGCGCTCC  79 49
        tapT 3628098 .. 3628113 +  -3.2  -2.98823   AAATCATCAGGTCAC              TCGCCT TTTC AGGAGA               TCTGTATGAGCCAGC  45 40
         pat NONE
JJN11_RS17485 NONE
        pssA 3632255 .. 3632273 + -12.4    -5.252   ATCCTGTAATCTTCA             GCCCTGTC ATT GACGGGGC             TTTTTTATGGAGGTC 100 32
JJN11_RS17495 NONE
        bamD 3645502 .. 3645521 +   -15  -5.68039   CAGTAGAATGCAAAA            CGGCAGCC TCAG GGCTGCCG             TTTTTTTATCCATTT 100 46
        raiA 3646120 .. 3646135 + -11.8   -5.4505   TGAGTCTATCGCCAA              CGCGCC TTCG GGCGCG               TTTTTTATTGACAGG 100 51
JJN11_RS17555 3646295 .. 3646315 + -11.8   -5.5112   GAAGACGAACAATAA            GGCCTCCC ACACC GGGGGGCC            TTTTTTATTGATAAC 100 49
        pheA 3647683 .. 3647699 +  -7.9  -3.06315   CCATTGTCGGACAGC              GCACCGG CAA CCGGTAC              TCTTCCAGCTGTTCG  57 195
JJN11_RS17580 NONE
JJN11_RS17585 NONE
        dgcN 3653390 .. 3653403 +  -4.5  -3.53012   CGAGGCCAAAAGCGA               TCAGC ACCA GCTGG                TTTGGCAGGCCAAAC  53 284
JJN11_RS17630 NONE
JJN11_RS17635 3661315 .. 3661330 +  -6.1  -4.59773   TGACGAATTTTTCCA              GCGCA AATTTA TGCGC               TTTTTCAACGTCCAG  78 411
        nadK 3662639 .. 3662657 +  -3.9  -2.97475   ACAAACACAGTCATG             GTTTTTC ATACA GGAAAAC             GTTTATGCTGGCACA  47 88
        recN 3664319 .. 3664333 +  -2.8  -2.88861   AAGAACTGCTGGCTG               CCTAAA CTT TTTCGG               TATCTCAGGGTCATA  42 21
        bamE 3664835 .. 3664851 + -12.3  -4.55997   TTCAGAAATGCAAAA              GGTGCTC AAT GAGCACC              TTTCTTGTTCTCTCT 100 44
        smpB 3666280 .. 3666292 +  -2.7  -2.55074   ATTTCCGGATACTTA                TTGAG CGA TTCAA                TAAGTTAGCGTTCCG  40 40
        ssrA 3666850 .. 3666865 + -11.8  -5.60993   CCTGAGCTAGCAAAA              GCCCGC TGAT GCGGGC               TTTTTTTGTGGGGAA 100 156
JJN11_RS17680 3667873 .. 3667890 +  -2.7  -5.64274   AGATCCTCAAGGAAA             CCAAC CTATTGCT GTTGG              TTTTTTTATGGCTGA  85 92
JJN11_RS17810 3694625 .. 3694635 +  -6.8  -2.73994   CAGACTTAGCGACGC                 CCTG TTT CAGG                 TGGTCTTGGCACAGT  51 286
JJN11_RS17825 3695661 .. 3695696 +  -5.2  -3.62275   GAACTACAGTAGTAA    GCACAGGCCGGGTGGT GATA GCTGCCCGGCATTCGC     TTTAAAGTAATGCGT  59 41
JJN11_RS17855 3698751 .. 3698767 +  -5.1  -5.07107   TCTGTATTTCTATTC              GGATCAG CTT CTCATCC              TTTTTTCGCGCTTTA  82 147
JJN11_RS17925 3707001 .. 3707026 +  -7.8   -2.7566   TTACCATTCCCCTCA         GAAAATCTAA ATTAAC TTAGATTTTC          TGCTTGACCTTCAGT  59 41
JJN11_RS17935 NONE
JJN11_RS17940 3710738 .. 3710758 +  -5.4  -2.78463   AAGAGATAAATCACA            TCACCAAC AGAAA GCTGGTGA            TGTGATGCAAAAACT  47 441
JJN11_RS17995 3720271 .. 3720305 +  -5.1  -3.33037   TTATTAGGTTTCAAC    GCGGTTAAGTAA-GCG CCTA TGCTTTATTTCACCGC     TTCGTCATTTGCGCT  54 434
JJN11_RS18000 NONE
JJN11_RS18005 3740542 .. 3740577 +  -3.9  -3.39749   ACCGGTTAGCGCTAA    TAACAAGACCCGGGCG CTCGT CGCCCGGG-CTTAACA    TTATAAAGTTGTTCA  50 32
JJN11_RS18010 NONE
JJN11_RS18015 NONE
JJN11_RS18020 3745782 .. 3745800 +  -5.9  -3.74347   GACTTCAGCTGCCCC             CGGCTCT CCTCC AGCGCCG             TTTCAAGTTTATCAA  58 425
JJN11_RS18035 NONE
JJN11_RS18040 NONE
JJN11_RS18045 3749319 .. 3749332 +  -2.3  -2.85484   TCTTGTTTCTGCGGT               CAGAC TGAT GTCAG                TGATTATCGATAATT  40 61
JJN11_RS18050 3750504 .. 3750537 +  -7.4  -3.08679   TTTGCCATTTTCCTC     TCAGTGCGTTCCGAC ATAAC GGCGGCACGC-CTGA     TGTTGCATCGCGCCG  59 517
JJN11_RS18065 3751949 .. 3751972 +   -11  -4.84359   CTTTAATGGGTAACC          TCTGCGGGTC CGCG GGCTCGCAGA           TTTTTATAGCACTGG 100 70
JJN11_RS18070 NONE
JJN11_RS18075 NONE
JJN11_RS18080 3753948 .. 3753966 + -11.7  -4.18018   CAGCCGTACCACGAT             GCCCCGT TTTAT ACGGGGC             TTTTCGCTGACAGGG  91 56
JJN11_RS18085 NONE
        cydB 3756479 .. 3756491 +  -6.2  -3.75153   GTTGCGCAATAAAAA                GCCG GGTGA CGGC                TTTGCCTTACCCGGC  61 99
JJN11_RS18115 3759564 .. 3759616 +  -7.2  -3.22618   AGAAATAGTGTAAAT TTCACTTAAGTTTCTCGTGGATATT CCCA GATATCCACGAGAACCCTGCG-GAA TATATTCTCTAAACC  60 33
JJN11_RS18120 NONE
JJN11_RS18125 NONE
JJN11_RS18130 NONE
JJN11_RS18135 3770803 .. 3770834 + -12.4  -3.21099   AGATAAATAAGCCAA      CAACAATCTCAGCC AGCA GACTGGGATTGTTG       TTGATAATAGCGCCC  82 35
JJN11_RS18140 NONE
JJN11_RS18145 3771812 .. 3771826 +  -2.1  -3.30781   CTTTGTTGAAACACT               TTCTG ATACG CGGAA               TTGACTTTAAATTGC  45 7
JJN11_RS18150 3772460 .. 3772476 +  -5.1   -3.3579   GTGTATAGCGATTAC              GGGCA CAAATAT TGCCC              TCTTTGAGCAAATTT  54 87
JJN11_RS18155 3772851 .. 3772870 +  -7.1  -3.21465   AGTTAATAAACAGTC            TCTCGCC CCTGCC GGCGGGA             TGTTGGGTTTACGTT  60 35
JJN11_RS18160 NONE
JJN11_RS18165 NONE
JJN11_RS18170 3774038 .. 3774054 +  -5.1  -4.60041   TGCTCGTAACGCCCT              CTTCTTC GCT GAAGATG              TTTTTGGCGGTCAAT  73 135
JJN11_RS18175 3774871 .. 3774885 +  -5.7  -3.08211   CGCATCAGCACCGAC               GCAGA AGATG TCTGC               TCATTTTGACAAGGT  53 54
JJN11_RS18180 3775268 .. 3775278 +  -2.4  -2.79291   CTTAAAGCGCCGACC                 GGCC TTT GCCC                 TAATTAATACGATTT  40 8
JJN11_RS18185 NONE
JJN11_RS18190 3776045 .. 3776060 +  -4.6  -2.82749   TAGGGGAGGCAAATT              CCAGGA CTAT TCCGGG               CTTTAAGATTATTCC  47 38
JJN11_RS18195 3776794 .. 3776820 +  -6.4  -3.30124   CGGGTGGCGGCGATG         CCTTACCCGGCC TAC GGTCCGGTGCGG         TTGTGCCGGGTGGCG  59 58
JJN11_RS18205 3778913 .. 3778925 +  -4.7  -4.15833   CCCTCCTCCAGCAGC                GCGGC TTT GCCGA                TTTTGAACTGGTAGT  64 448
JJN11_RS18230 3783891 .. 3783901 +  -3.2  -4.21194   TTCCGGAAGGCCGGG                 GCGA GGT TTGC                 TTTTACCTCGTAGGC  60 213
JJN11_RS18265 3793147 .. 3793172 +  -3.9  -2.87132   CGCTGTACCGCGGCC         TGCGC-CTGGGC TAA GCTCGGAGCTCA         TCTATCAGAAGGAGG  45 356
JJN11_RS18275 3793486 .. 3793500 +  -7.1  -5.09225   GCTTCGGCGTACGTC               CCTGG CCGGT CCAGG               TTTTTTCAGTGCCAT  90 139
        alaE 3794907 .. 3794930 + -12.4  -2.93549   CAAGGCCTGAAGCAC          GGCGACTGGC GAAA GCCAGTCGCG           TCGTTATTGCGAGTC  81 31
JJN11_RS18295 3795794 .. 3795817 +   -11   -5.2197   TACTGTGTTCTTCTA          CCCCAATGCC CTGC GGTGTTGGGG           TTTTTCATTTTTATA 100 53
        nrdI NONE
        nrdE NONE
        nrdF 3799835 .. 3799863 + -16.2  -2.75844   AATTCTCCGGTCATA        TTCGCCTGAATC ACATC GATTCAGGCGAA        ATTTCCCATCCGCAC 100 115
        proV NONE
        proW NONE
        proX 3803439 .. 3803450 +  -2.2  -3.53444   GCCTCCTCTCTTCAT                CCGT TATT ATGG                 TTTACGAAAAAATAA  47 107
JJN11_RS18335 3804946 .. 3804962 +  -2.9  -2.93901   ACATTATTTGTCACT              GTCGTTA CTA TATCGGC              TGTAATTAATGAGGT  43 294
        mprA 3805562 .. 3805585 + -10.3  -3.96327   ATAAGAAAACCGTCA          GGCCAGCAT CTCATC GTGCTGGCC           TTTCTGATAACAGGT  82 70
        emrA NONE
        emrB 3808396 .. 3808415 + -12.2  -5.60993   ATCTGAAAAGAAAAA            CGGATCTG CATG CAGATCCG             TTTTTTTATGGGCGC 100 43
JJN11_RS18440 NONE
JJN11_RS18445 NONE
        srlB NONE
        srlD NONE
        gutM 3826685 .. 3826695 +  -5.4  -3.36492   AAACATGGATAATTT                 CGTT GTG AACG                 TTATAAGCTTGCGAA  54 29
JJN11_RS18465 NONE
        gutQ 3828546 .. 3828561 +  -7.5  -3.27475   AGCGCCCTCGCGCTC              GCCGC CCAGTT GCGGC               TGTTCTGCTCCAGCG  56 95
        norV NONE
        norW 3832809 .. 3832825 + -15.1  -5.14563   ATTTTGCCTTTCGCA              GCCCCGG TGC CCGGGGC              TTTTTTAATGCGGAA 100 79
        ascF NONE
JJN11_RS18500 3837234 .. 3837247 +  -2.3  -2.84878   CAAGAAAGTGATTGC               CAGCA ATGG TGCAG                ATTTAGATTAACCCC  40 1
JJN11_RS18505 NONE
JJN11_RS18510 NONE
JJN11_RS18515 NONE
JJN11_RS18520 3841791 .. 3841813 +  -4.8  -4.56775   TGCTTTTCATAGAGC           GCGATCATCT TAC GGATGGTCTC           TTTTTCGCGCGCGAT  72 322
JJN11_RS18530 NONE
        mutS 3845060 .. 3845087 +  -9.9  -5.24531   GACGCTGGATAGTAG       GCCGGGTAAGGCG TAGC CGCC--ACCCGGC        TTTTTTATCCGCGCT 100 147
JJN11_RS18555 NONE
JJN11_RS18560 3848337 .. 3848356 + -13.6  -5.00616   TAAGCAAAAGAAAAA            GGCCAGTC GAAA GACTGGCC             TTTTTTGACGAAAAG 100 38
JJN11_RS18575 3851013 .. 3851027 +  -5.6  -2.85351   CATGATGCACCAGGT               GCGCCA GAA TGGCGG               TCTGGTATCCAGAAC  47 436
JJN11_RS18635 3861000 .. 3861020 +    -4  -3.80733   CCCGCACTCGCGCTT            GAGACC AAAGAAACG GGTCTC            TTCTTCTGCCATACC  57 130
        queD 3866009 .. 3866044 +  -6.8  -3.53012   ACGTCTCATGAGAGA    GCAACG-GCGCAAGCTC AAA GAGCATCAGCGCGTTGC    TTTCCAGCGACGCCG  61 43
JJN11_RS18665 NONE
JJN11_RS18670 3871207 .. 3871224 +  -8.4   -4.7497   CTGGCTGATGGGCTG             CAGCGC AATAAC GCGCTG              TTTTTCGTCCGTCAG  93 154
JJN11_RS18680 3873251 .. 3873264 +  -9.5  -4.84359   AATGATAAAAAAAAA               CCCGC CGAA GCGGG                TTTTTCTAAAGATGA 100 39
        barA 3883891 .. 3883908 +  -2.5  -4.65078   ACGGCGGCGATATTG             CGGGCCG CCAT CCGCACG              TTTTCTTCGGCCTCT  66 104
        queF 3893291 .. 3893308 +  -9.8  -3.80625   ATAAATTTATAATAT             GCGCGG TATGTT CCGCGC              TTTAGGTTGTGAAAG  79 46
        ppnN 3894757 .. 3894779 + -12.7  -2.63382   TTGCGCATAACACCC           GTGCCCGGC TGCGT GTCGGGCAC           CTTCTCACTCTCCCC  81 31
JJN11_RS18765 3896598 .. 3896621 +  -6.6  -2.84634   TTCGCGTAATGCCTC          CCGCGCCATC TTCG GATGGCGCAA           TCTACTCCTCTGACG  54 32
JJN11_RS18770 3898035 .. 3898051 +  -6.5  -2.77167   TAAGCCTCAAAAGGA              GCCTTGT TTT GCGAGGC              TCCTTCCCGTTCTTC  54 38
         xni 3899224 .. 3899243 +   -10  -4.41548   GCCAGGTAGCCATCA            GCGCGGCCA CCT TGGCCG-GC            TTTTCTACCATATCG  88 356
        csdA NONE
        csdE 3904182 .. 3904207 + -10.3  -4.15044   TCGATCTGCCCGCCC         GCGCCGCCGGT GGTC ACCAGCGGCAC          TTTATTGCGGCGACA  82 359
JJN11_RS18820 NONE
JJN11_RS18825 NONE
JJN11_RS18830 3906339 .. 3906352 +  -8.1  -6.23317   TCTTAAAACAATAAA               CACCC TTCC GGGTG                TTTTTTTGTTTTTGT 100 46
        argA 3909253 .. 3909273 + -11.1  -4.10007   GGTCATCACCCACAG            GCCGGGC AAGCGCC GCCCGGC            TTTTCACACGCTTAT  87 42
        mutH NONE
JJN11_RS18910 3929346 .. 3929364 +  -8.8  -4.84033   AAAGATAATAGTAAA             GGTCAGCG GCT TGCTGGCC             TTTTGATTTTTCTCT  88 33
JJN11_RS18915 3930508 .. 3930523 +    -9  -4.98531   TAATAAACGCAAAAA              GGCAAC GACA GTTGCC               TTTTTAGTTTCACAG 100 38
        galR 3936051 .. 3936063 +  -6.2  -3.09834   CCGCATGTTGCGGAG                CCGC GTACA GCGG                TTGAATAATCACATC  52 438
JJN11_RS18955 3941469 .. 3941495 +  -2.8  -4.36914   GCTCGATCTCAAGTT         TTACCGCGTGGC CCA GATGCGCGGCGA         TTTTATCCCGCGCGC  64 468
JJN11_RS18965 3943630 .. 3943642 +  -4.7  -3.14132   ATAGCGCGTACCCAG                CAGCG CCA CGCGG                TTCATGCCCGCCGCG  47 339
JJN11_RS18975 3944465 .. 3944484 + -13.6  -5.64006   CAAATAAAGTAATAA            GGCGATGC GCGG GCATCGCC             TTTTTTTGCTTAAGT 100 34
JJN11_RS18980 NONE
JJN11_RS18985 NONE
JJN11_RS18990 NONE
JJN11_RS18995 3949250 .. 3949274 + -12.9  -5.71712   CCCATACGTTATCAA          TACCCTACCGT TAT GCGGTGGGGTA          TTTTTTTATCTGAAG 100 43
JJN11_RS19000 3950471 .. 3950500 +  -9.9  -2.85351   GGCCTACAAAACCCC       ATGCCCGGCAAGCG AAG CGCC-GCCGGGCAA       TCTGCTATACCCCAA  68 70
JJN11_RS19020 3955557 .. 3955575 + -11.7    -5.626   CCTGTAACTGGCCTT             GCCCTCC TTTAT GGAGGGC             TTTTTTTATCCGCTG 100 57
JJN11_RS19045 3960048 .. 3960064 +  -2.1  -3.09327   TTAAGCGACGCCAAC              AGCGGCA GGC TGCCACC              TCTTAACTCCCCTGG  42 3
JJN11_RS19050 3961860 .. 3961874 +  -2.8  -3.57615   TTGAAGAGCTTAGCG               CTGC CGCGCAC GCAG               TTTCCCGCGTGTTGG  49 467
JJN11_RS19065 3962533 .. 3962552 + -10.7  -3.57561   TCTTCGATAAAAAAA            CCCGGCA GGTTAA TGCCGGG             TTTAAAGCGTTCCAG  79 41
        fldB 3972462 .. 3972480 +  -3.8  -3.64703   CAAGCCATAAATGAT            GGCAGCG TTGACC CGC-GCC             TTTGCGTAAGCGGAG  54 122
        ygfZ 3974362 .. 3974393 +  -2.9  -5.07486   GCCTACAAAACCCGT     AGGCCGGGTAAGGCG AAGC CGCC--ACCCGGCAA      TTTTTATTAGACCTG  74 73
JJN11_RS19145 3976357 .. 3976377 +  -3.4   -2.6336   AACATATTACAACTC           TCACGA-AT TGTT ATATCGTGA            CATTTTATTCCCCTT  42 62
        bglA 3977902 .. 3977954 +  -4.5  -3.33696   CGCTGCGCTTGCACC GGCCTGCGATCGATCCCCTCTCCCC TAT GGGGAGAGGGTTAGGGTGAGGGGCC TTACTTCCCGCCCGC  52 59
        zapA NONE
        ssrS NONE
JJN11_RS19205 3989666 .. 3989685 +  -4.9  -4.29738   AGATCTGGTTAATGG            CCGTCAG CACGCC CGGACGG             TTTTCATGGATATGC  67 292
        argP 3992701 .. 3992727 + -10.1  -5.15167   AGGACTAATAAAAAA        GCCGGGT-CGCG TTAA CGCTCACCCGGC         TTTTTATTGCTGCTA 100 33
JJN11_RS19260 4002241 .. 4002258 +  -9.1  -3.53091   TAAATAATGTACCGG             GGAGGCG CCCG CGTCTCC              TTTGAAAAGCCGGGT  71 34
JJN11_RS19335 4016661 .. 4016681 +  -3.9  -5.09895   CGCGCAGCAGCACTC            AGCGCGTAA GGC TTACTCGCC            TTTTTTCGCTGCCTG  77 17
JJN11_RS19360 4022991 .. 4023028 +  -8.9  -2.56432   CTACTGGCTGGGGCA   GGAAAAGCCCGGCGACG CAAA CGTCGCCGGGCACCGTC    ATTACTCGTCTTCCA  63 207
        metK 4026978 .. 4027006 + -10.4    -5.252   GACTGACCGCTTACT        GAAAAAGCCAGC CTCGT GCTGGCTTTTTG        TTTTTTATCCCCCTG 100 43
JJN11_RS19380 4028600 .. 4028622 +  -5.4  -2.98719   CCTGCGGAGGAAGCC           GCTTGCACCG CCT CGCCGCAGGC           TCTATGCTCTGCTCC  51 58
JJN11_RS19385 4029149 .. 4029173 +  -2.1  -3.05384   TAACCGGCAGAACAA          TCAGGAACATT CCT GATCTACCTGA          TTGCATACAGGAACA  42 38
        endA 4029963 .. 4030007 +  -9.9  -2.50784   GCGGCAACTGTTTCT TAGCGTCCCCCTC-CCCCTC TCCCCT GCGGGGTGAGGGGGACTCAG CTCTTGATGGATTTC  66 50
        rsmE NONE
        gshB 4031813 .. 4031823 +  -3.2  -2.53422   GGGTGAAGGGTATAG                 TGAC AGT GTCG                 GGTTTTGTCCGCATA  42 111
JJN11_RS19405 4032426 .. 4032463 +  -2.5  -4.06055   CAGACCATGCCTGGC   GTCGCGGGGCATGCC TGATGAGC GGCACGCTTCTCGCC    TTTGATTTCGGCACT  55 8
        ruvX 4032871 .. 4032890 + -13.6  -3.34895   CTGATCCCCCTCCCT            TTGCCCGG CAAT CCGGGCAA             TTCATTCCCGGTCCG  91 37
JJN11_RS19425 NONE
JJN11_RS19430 NONE
        yggU NONE
JJN11_RS19440 NONE
        hemW 4037989 .. 4038008 +  -8.6  -4.18494   TTCCTCGCCGAAGCG            TCCTGAAG CAGG CTTCAGGG             TTTTGCCTCCCCCTC  77 20
        mutY NONE
JJN11_RS19470 NONE
        mltC NONE
JJN11_RS19480 4044180 .. 4044201 + -15.9  -5.95166   CATTAATCTGTGAAA           TCCCCCTCC CTGC GGAGGGGGA            TTTTTTTTACTTCAG 100 35
JJN11_RS19490 NONE
JJN11_RS19495 4047636 .. 4047652 + -10.8  -5.04601   CCACTATTTAAAGAA              CCCGCC CAAAA GGCGGG              TTTTTGCTTTCTGAG 100 38
JJN11_RS19525 4056778 .. 4056802 + -12.9  -3.03441   TATTAATATGCATTG          CTGGGCTGC CTTTTTT GCAGCCCAG          TATTACCGCCTGCTC  76 156
JJN11_RS19540 4061433 .. 4061456 + -13.8  -4.57569   TTGTTATGTCCCTTC          AACGGGGCCC TCAG GGGCCCCGTC           TTTTTACCCGGGTAA 100 41
        yghU 4062464 .. 4062507 +  -4.5  -3.22448   AAGATAAACGTCAGG GCTAACCCCTGTGCCGGGCGG GCCA CCGCCCGGCG-ACGG-TCAGA TTACGTTGAGTTTCC  50 21
JJN11_RS19550 4062949 .. 4062971 + -10.6  -4.57073   CCCACTAATAAAAAT           GCCAGGTG ATTATTC CACCTGGC           TTTTTCAGGCCCCTC 100 33
JJN11_RS19555 NONE
        fucR 4064790 .. 4064810 +  -6.7  -3.25823   GACGCAATTGATCAG            CGACGCGCA GCT TGCCCGGCG            TTAGTCTGCCAGACG  57 1
JJN11_RS19570 4069437 .. 4069463 + -22.4  -4.67982   TCTGATGACCACGCC         TACCCGGCAGCC TGA GGCTGCCGGGTA         TTTTCTTAACTCAAA 100 36
JJN11_RS19580 4071553 .. 4071564 +  -7.2  -4.84673   GCCTGATAAGCGCAG                CGCC ATCA GGCG                 TTTTGTCTTATTTGC  85 98
JJN11_RS19595 NONE
JJN11_RS19600 4073617 .. 4073627 +  -2.4  -3.57406   CTCTCGCCGAACCCT                 GCCG TCT CGCC                 TGTTTCTGCTCAGCC  47 42
JJN11_RS19605 4074708 .. 4074727 + -13.6  -4.50993   CGGCAAATACAAAAA            CGGCAACC CGTG GGTTGCCG             TTTCTCTTTATTTCG 100 103
        metC 4077473 .. 4077485 +  -3.3  -3.65201   TGCTGTTCCACAGGA                AAGCC CAT GGCTG                TTATTCAAGATATTA  53 161
JJN11_RS19625 4078128 .. 4078146 + -10.2  -2.96274   TCCGTAAGAAGTACT             GCAACGCC TGA GGCGCTGC             TGTCGTTGTAGCCCC  72 15
        yqhD NONE
        dkgA 4081471 .. 4081496 + -11.1  -5.03145   CGTTCAGACTTGTAG         GCCCGGTAAGCG CAG CGCC-ACCGGGC         TTTTTTACAGGCTTA 100 78
JJN11_RS19660 4087658 .. 4087676 +  -7.4  -3.36878   TCCGCATCCATCGAG             TAGTGGCT TCA AGCCACGA             TTGTCACTGCCTCCG  62 85
JJN11_RS19665 4088709 .. 4088735 +  -3.6  -2.62192   CCCTGATAATAATTA         TCAAACCCAGGC TGA GCCTGGCTTCCA         CTTCATTAGCTACAC  42 56
JJN11_RS19675 NONE
        frmR NONE
        frmA 4092350 .. 4092366 +  -3.7  -4.26903   CGGACAGTGATTCAT              TACTGAT CCC ATCAGAA              TTTTAATCAACTCAA  60 20
JJN11_RS19690 NONE
        fghA 4094003 .. 4094014 +  -5.8  -4.62471   GAAGATCCGCCCGGG                CCAG ATCC CTGG                 TTTTATATATGCGTT  75 330
JJN11_RS19705 4098477 .. 4098496 +  -4.2   -4.7254   AGCCAGCCCTCCAGC            GCGGT-CAG CAG CGGTACCGC            TTTTTCCTGCCGAAT  71 203
JJN11_RS19720 4101151 .. 4101166 +    -6  -4.66938   AACTCAAATTACCAA              ACCCGC TTCG GCGGGG               TTTTATATTCCCGGT  78 45
JJN11_RS19755 4108332 .. 4108350 + -10.4  -2.73364   CCATTCTTATGAGCA             TCAGCTTT TCA AAAGCTGA             TGCTTAACGTAGAGA  69 41
JJN11_RS19760 4109192 .. 4109202 +  -4.6    -3.049   TCATCGCTGTGCAAT                 GCTC TGC GGGC                 TCATTCTTTCAGTTA  49 497
JJN11_RS19790 4117171 .. 4117187 +  -9.3  -3.58162   GCTTTTGCATCAGCG              CACGGGC ACA GCCCGGG              TTGGTTTCGTGGTGC  71 364
JJN11_RS19800 4120012 .. 4120027 +  -6.1  -2.90392   AGCAGTTCCACCTGC              CCGTC GACCCA GACGG               TATCCTTCCAGCCTC  51 195
        qseB NONE
        qseC NONE
JJN11_RS19835 NONE
JJN11_RS19840 4128271 .. 4128296 + -11.1    -5.626   AGCACCGAATCTCAG         GCCCGG-TACGC ATA GCGTTTCCGGGC         TTTTTTTATCACCTC 100 126
        lysM NONE
JJN11_RS19850 4129342 .. 4129371 + -13.6  -4.64676   GGGTAATCACTGAAG       TGCTGGGGTGGT AACAAC GCCACCCCAGCG        TTTTCTTACCAGTAC 100 12
JJN11_RS19870 4134842 .. 4134865 +    -4  -3.57144   CTCAACGGATACCCG          TCCATTAT GGGCAGTA ATAATGGA           TTTAACGATCGCCAG  51 184
JJN11_RS19885 NONE
        cusF NONE
JJN11_RS19895 NONE
JJN11_RS19900 4143306 .. 4143355 + -10.2  -3.28712   GAAAGACTTTTCCTG GGCCTTTACCCGTTTGCGTTA TTCAGCAGC TAACGCGG-CGGATAAAGGCC TTATGAAAAGAGGCC  75 40
        tolC 4149492 .. 4149516 + -15.7  -3.22475   CAACTAATGATGTCA          TCCGGCCAGGG CTA TCCTGGCCGGG          TATTATCGCGCTGCC 100 34
JJN11_RS19935 NONE
JJN11_RS19940 4151559 .. 4151572 +  -9.5  -3.53811   GGCCCGGTAAGCGCA               GCGCC ACCG GGCGC                TTTACCCCACCTGCA  74 92
        zupT 4153329 .. 4153366 + -17.9  -2.60079   GACGGCAGGAATAGG   GTAAAAAAAACGCCGGG TTAA CCCGGCGTTTTTTATGC    TGCGTTATCAGCTGG 100 22
JJN11_RS19960 4154750 .. 4154779 + -13.7  -3.98204   AAGCCGCCACCCGGC       AAAAAAACGGGCC TTTC GGCCCGTTTTTTA        TTTCTCGCTATCTTT 100 73
JJN11_RS19980 NONE
JJN11_RS19985 4162974 .. 4162994 +  -2.4  -3.66178   GTAGGTCATGTCGTC            CAGACCCG GCGCG CGGGGCTC            TTTCGGCTTCAGCAG  51 411
        plsY 4164649 .. 4164661 +  -4.1  -3.10894   TTTATATAGCTTGAG                TGGAA TCG TTCCG                TTCACTCCTGGTCCT  48 63
JJN11_RS20005 NONE
JJN11_RS20010 NONE
JJN11_RS20015 NONE
        ureC NONE
        ureE 4168962 .. 4168972 +  -2.6  -3.38118   TCACGCTCATTCACA                 TTAA GGA TTAA                 TTATGCGTAAGTTGT  47 22
JJN11_RS20030 4169497 .. 4169531 +  -3.6  -2.72661   ATCGCCTCTGCCCTG    CTGGCGCTGATGAGCT GATGG AGC-CGTCC-CGCCAG    TGGTTGCGCCTGATG  42 8
JJN11_RS20035 4170182 .. 4170192 +  -3.2  -3.08465   TTCACGATTATTCCG                 TTCC TGA GGAG                 TCTCTATGTCTGAGT  45 19
        ureG 4171046 .. 4171076 +  -7.4  -3.78775   TTGGCCGGGGTTTCA       TCCTGGGCCGGGGT TTC GTCCTGGGCCGGGG       TTTCATCCTGGGCCG  63 256
JJN11_RS20050 4174451 .. 4174465 +  -4.2  -4.08216   CAAAGCGCCCTTCGG               TGCCCT GCG AGGCCA               TTTTCGACAGCATCG  60 489
        rpsU 4175525 .. 4175551 + -10.9  -4.40882   AGTAGTAGTCGTAAG        GCCGTGC-TTCC GGAA GGAATGCGCGGC         TTGTTTTCGTTTATA  91 76
        dnaG NONE
        rpoD 4179368 .. 4179383 + -10.4  -5.64274   TCCTGATGTAAAAAA              GCTCCC TACG GGGAGC               TTTTTTTATGGCTGA 100 45
JJN11_RS20080 4180146 .. 4180163 + -11.3  -5.78622   AAATCAAAGAATTAA             GCCACTC CAGT GAGTGGC              TTTTTTTTACGCTAA 100 54
JJN11_RS20145 4195300 .. 4195310 +  -3.2   -3.9122   TCCCGGCGCTGAGGC                 CGGA AAT TTCG                 TTATTTCAGAACATA  55 53
JJN11_RS20180 4199073 .. 4199088 +  -6.1  -3.42699   GGCGTGCCAGTACGC              GCTGG CACGCA CCAGC               TTCTGATCGATGGCT  57 47
JJN11_RS20190 4200679 .. 4200697 +  -5.9  -3.69702   TGCCGCCGCAACGGA             CTCCTCC ACCAG GGCGGAG             TTCTGTTGGGTGGTG  58 106
        ygjG 4205837 .. 4205864 +  -7.6  -5.42259   GCTTTGGTTTTTGTA        GGCCCGGTAAGCG CAG CGCC-ACCGGGCG        TTTTTTTACCGATGA  95 61
JJN11_RS20215 4207379 .. 4207392 +  -3.7  -4.56775   GGCCCGGTAAGCAAC               GCGCC ACCG GGCGA                TTTTTACGCCGGCAT  66 200
        lsrR NONE
        lsrK 4215922 .. 4215953 +  -2.8   -3.9578   CGGCCTACGGTTTTG      TAGCCCCGGTAAGCG CAG CGCC-ACCGGGGAAG      TTCTTTGAGATCTAT  54 67
JJN11_RS20260 4218426 .. 4218439 +  -3.7  -3.75024   AGCGGAACGGCTCCA               CGCCC GAGA GCGCG                TTGTTGATCATAAAC  54 365
JJN11_RS20270 NONE
JJN11_RS20275 4221108 .. 4221127 + -10.8  -4.52415   CCGGGCAACGAAAAA            GGAATACG TGAG CGTATTCC             TTTCTTGTTGTAAGT 100 170
JJN11_RS20280 4222218 .. 4222254 +  -7.2  -4.37092   AGGGGATTGTGCGGT   CTG-GTGCCCGGCG-GCG CGA CGCTTGCCGGGCCTACGG   TTTTGTAGGCCGGGT  76 40
        sstT 4223750 .. 4223777 +   -12   -2.5088   GTAATTAATAAAAAA        GCCCGGTGGCGGC TAC GCC-TTACCGGGC        CTGATTTTGGTTCGT  78 33
JJN11_RS20300 4228599 .. 4228614 + -10.4  -5.03314   GTCTGGTATATAAAA              GCCGCT CCCG AGCGGC               TTTTTTGCGGGTCAA 100 108
        exuR 4229779 .. 4229803 +  -3.6  -2.71791   CCGTGCTGTTTGACC         CGGTTGACAGG TGCG TC-GTTAACCG          CTTTCCAGGAACACT  42 334
JJN11_RS20310 NONE
        mzrA 4230858 .. 4230868 +  -3.2  -2.66098   TGCGTGATACATCGC                 GTCT GTT AGGC                 TAAATTTCCACTATT  42 12
JJN11_RS20320 4231372 .. 4231386 +  -3.4   -2.5934   AGAACGAACTGAAAG               CGCTGG AGT CTCGCG               ATTACTGATTTAACG  42 3
JJN11_RS20325 NONE
JJN11_RS20330 NONE
JJN11_RS20335 4232462 .. 4232485 + -15.4  -4.56093   ACCCTGCCTCACCCT          GTAAAGCGCC TCCT GGCGCTTTAC           TTTTATCCTTCCCTT 100 46
JJN11_RS20340 4233077 .. 4233096 + -11.4  -4.39166   ATACTGAATCAAAAA            GCGAGGGG ATCT CTCCTCGC             TTTTGCTATCTAAGG  93 48
JJN11_RS20345 4234114 .. 4234132 +  -9.5  -3.69455   TTGGCTAAGCCTCAG             GGGCGCT TTTCT GGCGCCC             TTTACCCCTTTTTAT  76 33
JJN11_RS20350 4234579 .. 4234616 +  -9.7  -4.00868   TTGCTAAACAACTGA   TAGTTTGCCCGGC-GGCG CTG CGCCTGCCGGGCCTGCAA   TTTACTTCTGGGTGA  81 26
JJN11_RS20360 4236327 .. 4236354 + -14.2  -3.90922   GCCGGTCTGAACCGC        CGGCCTCTCC CCGTACAA GGAGAGGCCG         TTATTTCAGGCGACT 100 31
        garD 4246854 .. 4246871 + -11.3  -5.89947   AGTAAACCTCCTTTA             GCATGGC TTCG GCCATGC              TTTTTTTTGCCTTTC 100 47
JJN11_RS20420 NONE
JJN11_RS20425 NONE
        diaA NONE
        dolP 4252545 .. 4252571 +   -18  -2.82023   ATCAAGTAATCTCCC         CCGCCCTCTGCC GCT GGCAGAGGGCGC         TCATTCCTCTCCCTG 100 32
JJN11_RS20445 4254040 .. 4254058 +    -3  -4.13945   CCTTTGAACTGCACC             CCGCGG ATTAACG CCACGG             TTTTGGGCTGCCCGT  60 204
JJN11_RS20455 4254863 .. 4254875 +  -4.1  -4.25104   CTGGCGCGCCAGGCC                CTGTC CGC GATAG                TTTTCATCCACCGCC  62 258
JJN11_RS20470 NONE
JJN11_RS20475 NONE
JJN11_RS20480 4258877 .. 4258902 + -11.1  -2.81339   ACTCCATCCCTGTAG         GCCCGGTAAGCG AAG CGCC-ACCGGGC         ATTATGTTCACTGAT  74 75
        argG 4274234 .. 4274249 + -11.8   -5.4505   AATTAAGATGCAAAA              GGCGCC TGAG GGCGCC               TTTTTTATTGCCGAA 100 46
        yhbY 4280475 .. 4280489 + -12.8  -4.90217   CTTGAGTTGATAAAA               GGCCGC TAT GCGGCC               TTTTTCCTATCTTTA 100 117
        dacB NONE
        pmrA NONE
        pmrB 4284401 .. 4284419 + -14.6  -3.06315   ACACTGAATTAAAAA             GCCCCCTT GAT AAGGGGGC             TCTTGACGGTCTTAA  91 29
        ispB 4288594 .. 4288613 +    -5  -2.66316   TATGATTAAAGCCCT            GGCAAAAT CCGA ATATTGCC             TCCTGTAATGCGAAC  46 132
        sfsB 4289060 .. 4289073 +  -2.3  -4.09864   GCAGGGGGCTGCCGG               GACGA TTAC TCGCC                TTTTACACGCTCAAT  55 81
JJN11_RS20665 NONE
        kdsD 4296043 .. 4296058 +  -3.2  -2.78816   CATATGCATGATCTT              TTGCGC GCAG GCGTAG               TGTAATGAAGGATAA  43 5
        kdsC NONE
        lptC NONE
        lptA NONE
        lptB NONE
        rpoN NONE
         hpf 4300291 .. 4300315 + -16.5  -2.95192   TAACGGGTGCAGGAC          GGCCTGTTGTG AAA CACAACGGGCC          CTTTGTACAGTTAGC 100 54
        ptsN NONE
        rapZ NONE
         npr 4302151 .. 4302178 +  -4.8   -4.1822   CCGCCAGCAGCGCGG        CCTCCGACGCCGT CAG ACGGC-TGGCAGG        TTTGTTGAAATAGCG  64 171
        pepA 4310091 .. 4310128 +  -6.9  -2.75844   ACAAACGGCAGTAAA   CCGTAGGCCCGGTAAGCG TAG CGCC-ACCGGGCTTAAGC   ATTTAAAGTCACCAC  54 79
        holC NONE
JJN11_RS20755 NONE
JJN11_RS20760 4313984 .. 4314000 +  -2.2  -3.33492   TAACCTCTCTCCTGC              CCCCTT CTGTT AAGCGG              TTGTAAACTGAATGC  45 38
JJN11_RS20765 4315143 .. 4315154 +  -7.2  -4.03234   GCCCGGTAAACGTAG                CGCC ACCG GGCG                 TTTCTCTACAACCGC  71 95
JJN11_RS20775 4318593 .. 4318605 +  -5.5   -2.8805   AGATGCGGTGATAGA                CCACT TCC GGTGG                TGTGTGGCGAATCAT  48 178
        gltB NONE
        gltD 4326355 .. 4326368 +  -5.2  -3.45945   TTAATCTGAAAACGT               GGCC CTTCCT GGCC                TTGATTATCCCTGCC  53 449
        zapG 4335889 .. 4335909 + -14.7  -3.12942   CGAAAATAAATTTTA            CGGGCGCAG CCT TTGCGCCCG            TCCTTTCTTCCTGAC  91 49
        degQ 4337411 .. 4337447 +   -16   -2.8214   TGCGCTAAGCCTGTA    CCTGTCCGGACATCAC CCCGT GTGATGTCCGGATAAG    TCATGTTATGCTGCT 100 33
        degS 4338579 .. 4338596 +  -9.1  -5.46657   GCAGGCATAAAAAAA             CCGGAGT TCAT GCTCCGG              TTTTTTATTGCCCTG 100 45
        argR 4340446 .. 4340474 + -12.4  -2.64099   AGGAACTCTGATCCT        CTTCCCTGCCGC CGCTC GCGGCGGGGAAC        CTTCTGCTCCCGCCC  78 30
        yhcN NONE
        yhcN 4341486 .. 4341504 +   -16  -5.39721   ATTGATATACGACTT             GCCCCTGC TTC GCAGGGGC             TTTTTTATATCCTGC 100 52
        aaeR 4347785 .. 4347805 +  -3.9  -3.59627   CATCGCTTCGATGCC            GGAGCCA ATCAGGG TGGCGCC            TTTCACCGCTTTGGT  51 216
JJN11_RS20950 4361030 .. 4361052 +  -2.6  -3.15768   ACCAGATCCAGGGCC           GTACGCTGGT GAA GCTGGCGTAA           TCTTCAAATTTTCGT  45 3
        msrP NONE
        msrQ 4362777 .. 4362792 +    -4  -3.20307   GTTTAACCTTCCTGG              GCATTT ATCC GAATGC               TGTTGATAATCTTCC  48 71
        aroQ NONE
        accB NONE
        accC 4365290 .. 4365306 +  -7.2  -6.02919   GCATAAGCGTAAAAA              GGTCGG TTAAT CCGGCC              TTTTTTTATTTCTGG 100 45
JJN11_RS20980 NONE
        panF NONE
        prmA 4367966 .. 4367991 +  -9.7  -5.40072   AAGAAGTAATCACTC         CAGCGTGGTCA TCCC TGGCCACGCTA          TTTTTTTACCCGCAA 100 32
JJN11_RS20995 4368907 .. 4368927 + -12.7  -3.30124   AAAGAAGCGGGATAA            TCTGCTGTT AAA AACAGCAGA            TTATCCCGAATAACC  87 90
        dusB NONE
         fis 4370502 .. 4370512 +  -2.4  -5.65177   GGCGCGAACCGGCAT                 GGGG AAG CGCC                 TTTTTTTATGCCTGT  83 70
JJN11_RS21010 4370850 .. 4370862 +  -6.3  -3.58329   CCTCGAAAAATTTGC                GGTTT TAA AAACC                TTTGAGGCATCTTTA  61 53
JJN11_RS21015 4373034 .. 4373057 +  -5.2  -3.37466   CCAGCAAATCTGACG          CGATGCTGCT ATGA GGCGGTGTCG           TATTCTCTGTGGGCT  54 28
JJN11_RS21025 NONE
JJN11_RS21030 4378348 .. 4378361 +  -9.5  -4.81814   ATAGTAATGGGTAAA               GGCGC TTCG GCGCC                TTTTCTTATGATAAT 100 37
JJN11_RS21035 4378882 .. 4378912 +  -9.1  -4.86621   CCGTGTCCAGGTAAT      CCAGAAAGCGCGGA TCCG TCCGCGCTTT-TGC       TTTTTCATTGCAGAT 100 27
JJN11_RS21040 NONE
JJN11_RS21045 NONE
JJN11_RS21050 NONE
JJN11_RS21055 4383468 .. 4383487 + -13.6  -4.32201   GCAGAAATGCAAAAA            GGCCATCC TTTC GGATGGCC             TTTTCACTTAATTGA 100 92
JJN11_RS21095 4390434 .. 4390444 +  -4.6  -3.96327   CACCAGCTCAGAAAA                 GGCG TTT TGCC                 TTTCTGATAGAACAT  62 403
         def 4394437 .. 4394448 +  -7.2  -3.25823   GAAACTGGATCGCAT                GCGC GCTC GCGC                 TTAATGTGACCCCGG  60 10
         fmt 4395442 .. 4395460 +  -7.3  -5.61881   ATCATTTCAAATTAA             GGCCCGG TGTTT CCGGGCA             TTTTTATTTTTGCGG 100 42
        rsmB NONE
        trkA 4398169 .. 4398196 + -12.8  -4.57569   CTTCCTCTGACGCTT        GCAAAGGTGCTG TTTT CAGCACCTTTTC         TTTTTAACCCAATAA 100 31
        mscL 4399024 .. 4399037 +  -6.7  -3.55444   AGACTCGCCATTCGC               CCCTT GTTC AAGGG                TTTCCAGAATAGAAC  58 321
JJN11_RS21310 4414553 .. 4414579 +  -4.5  -3.36569   TAGTCATGAACGCTG        TCTGCAT-AAGC GATA GCTTCACGCAGA         TCTTTCGCCCCTTCG  51 160
JJN11_RS21370 4423063 .. 4423077 + -11.4  -5.31456   TGAGACGTAAAAAAA               GCGGGA ATA TCCCGC               TTTTTTGTGCCTTAA 100 38
JJN11_RS21395 NONE
JJN11_RS21400 NONE
JJN11_RS21405 4429723 .. 4429742 +  -7.8  -3.38046   ATGCCTCGCAATCAA            TTTCGCGG TTAA CCGCGACA             TCTTTCCACTCAGGG  64 14
JJN11_RS21410 4430784 .. 4430797 +  -2.3  -4.17089   AGATCCACCGCGCGG               GAGAC CGCA GCCTC                TTTTAGCGCTTTGCC  59 175
         crp 4432043 .. 4432070 + -15.6  -5.07275   TTAATTCCGCTCAGA        CGGCGTGGCATC GCAT GATGACACGCCG         TTTTTGTCTCTCTCA 100 37
JJN11_RS21425 4434388 .. 4434420 +  -2.6  -3.96892   CATCGCCCCTTCGCT     GGCGGCGGCGTAGAGA AAA TCGC-GCGCC-CGGCC     TTTGTACTGCGGCTT  56 237
        tsgA 4439066 .. 4439090 + -12.2  -3.98256   CGCACTAATCCTTAT          GCCCCTTTGC GCTCA GTAAAGGGGC          TGTTTTTGGTAAAGC  95 33
        nirB NONE
        nirD 4443489 .. 4443513 +  -7.7  -4.86613   CTGAGAGGCTGATTG          AAACGGGGGCG CAA TGCCCCCGCTA          TTTGTTTTGATTTTG  86 29
        nirC NONE
        cysG 4445867 .. 4445892 +  -7.6  -2.78596   ATATTCCCCGCCAAA         TGAGTAGTCC TGTAAT GGACTACTCC          TCTCCTGACGCCGTC  59 53
JJN11_RS21485 4446168 .. 4446182 + -11.4  -5.71712   CAGGCAATAAAAAAA               CCGGGA AAT TCCCGG               TTTTTTTATATCCCG 100 49
        mrcA 4458897 .. 4458920 + -14.6  -2.75844   CTATTCTGATCTATC          TCCCCCTTCC CTGT GGAGGGGGGA           CTTTCCGCTACAGCC  90 32
JJN11_RS21560 4461950 .. 4461987 +  -4.3   -3.8211   CCTGATCGGATAACC  TCTGTGCGCGAGCAG ATATGCTACC CTG-TCGCGCAC-GA   TTCTTCTGGCTGGAG  57 28
        yrfG NONE
        hslR NONE
        hslO 4464003 .. 4464032 + -17.3   -2.7497   GCACTAAGTCCTGCC       GTTAACTGCCCTC TTGA GGGGGCAGTTAAC        CTTTCCCCCTCCTCT 100 34
        pckA 4466036 .. 4466055 + -12.2  -4.43681   GCATGCCCATAAAAA            CGGTAACC TGCG GGTTACCG             TTTTGCTGTTAACTC  95 72
        greB 4468842 .. 4468852 +  -2.4  -2.51871   AGTCCTGGAGCGCCC                 CCCG CGA CTGG                 CATTTTGCTGTGCCA  39 39
JJN11_RS21600 4471241 .. 4471279 +  -6.7  -4.36914   AAGAAACGCTAGCTT  ACGTAATGCCCGGTG-GCG CTT CGCTTACCGGGCC-TACGG  TTTTGTCGCCCAACG  74 29
        feoA NONE
        feoB NONE
        feoC 4474384 .. 4474421 + -13.5  -4.08948   GGCGCTGCGTTAAGT   GTGAATAAAGCCGGGCA ACTC TGCCCGGCTTTGTGCAA    TTATTTGTAGACTTC 100 28
        gntX 4476299 .. 4476315 +  -6.5  -3.21593   TGTCGAACCTTGTAG              CGCCC TCAGGTT GGGCG              TATTATACCCAGGTA  57 26
        nfuA 4477037 .. 4477051 +  -5.7  -3.28712   TCAGAATTCACATTT               TGACC GCGGG GGTCA               TTCTCAAGCCGCACA  57 130
        gntT 4478661 .. 4478676 + -11.8  -5.66684   CCGGGCAATAAAAAA              CCCGCC ATCC GGCGGG               TTTTTTTATCACTTC 100 128
        malT 4486471 .. 4486501 +  -3.1   -4.6971   CGTGTAGGGCATTGC      CCGGCGGCGCTGCG CTTG CGCGG-GTCTACGG       TTTTGTTGCCATTTA  68 34
        glpD 4490413 .. 4490424 +  -7.2  -5.75342   CGGGTAAGGCGCAGC                CGCC ACCC GGCG                 TTTTTTTTACAACCG 100 149
        yhgN 4502147 .. 4502169 +   -10  -3.37164   AGCGCAAGCGCTGTC           CAAAATTGCT CCC GGCAATTTTG           TCTTCGTCTTTTTCC  73 246
JJN11_RS21745 NONE
        yhhY 4510850 .. 4510884 +  -7.7  -4.21827   TACGGTGGTGATAAT    CC-GGCTGCCGCCCGG GCTG CCGGTCACCAGCCAGG     TTTTGCCATCTTTCA  74 393
JJN11_RS21760 4512867 .. 4512900 + -19.7  -2.72991   ACAGATACAATCGAC     GCCCCAGCGCAGCAGT TCC GCTGCT-CGCTGGGGC     TGATTGACGGTGTAA 100 79
        panM 4523799 .. 4523817 +   -11  -3.80573   ACCACCTCCGGCTCT             GCCAGCTG CAA TAGCTGGC             TTTGCTGCTCATCAG  81 164
        rsmD NONE
JJN11_RS21875 4535679 .. 4535709 +  -4.1   -4.7339   CGGCAGGCGTAACCT      GCTGCTGACGCGATC GAC GATCGT-TTAGC-GC      TTTTTCCCGTTTATT  75 265
JJN11_RS21885 4536624 .. 4536643 + -12.2  -2.95223   ATATTTAACGCTTGA            CTCTGGAG TCGA CTCCAGAG             TGTATGCTGCGGTTA  81 33
        zntA 4539287 .. 4539305 +    -6  -3.78934   CAGCATGATGTTGAG             GTACATCA GAA TGACGTAC             TTGTTATCCGACAGC  61 437
JJN11_RS21915 NONE
JJN11_RS21920 4543727 .. 4543745 + -14.6  -5.40072   GTCATCACGATGAAA             TGGCCTCC TTC GGAGGCCA             TTTTTTTAGCCGCCA 100 41
JJN11_RS21930 4546177 .. 4546200 + -14.6  -3.72788   TGCGGTAAACTTATA          CGTCGGGTCA GCAA TGGCCCGACG           TTCTCTGTTCTAACC  95 65
JJN11_RS21935 NONE
JJN11_RS21940 NONE
JJN11_RS21945 NONE
JJN11_RS21950 NONE
JJN11_RS21955 NONE
JJN11_RS21960 NONE
JJN11_RS21965 NONE
JJN11_RS21970 4551645 .. 4551658 +  -2.3  -3.36671   GCCACACCGCCAGCA               GCGGG AAGA TTCGC                TTATGCCGTTAACCT  45 0
JJN11_RS21975 NONE
JJN11_RS21980 NONE
JJN11_RS21985 NONE
JJN11_RS21990 NONE
JJN11_RS21995 NONE
JJN11_RS22000 4558398 .. 4558418 +  -3.2   -3.6761   TAACGCCAGTATTCT            GCTCGGGA GAGTG TCATGAGC            TATTTATTACCGGCA  53 7
JJN11_RS22005 4558873 .. 4558893 +  -2.5  -3.27475   CACTGTTTAAACCAG            GAGTGAATC CAT GAGTCGTTC            TGTTCTGGTCACCGG  45 12
JJN11_RS22010 NONE
JJN11_RS22015 NONE
        acpT 4561825 .. 4561838 +  -8.1  -4.63184   TATGAATACGGTAGT               CGAGC GTCT GCTCG                TTTTTGACATAAATT  83 426
JJN11_RS22030 NONE
JJN11_RS22035 NONE
JJN11_RS22040 4564920 .. 4564940 +    -6  -3.62597   ACACAGAGCAGCAGC            GGCGTGGC ATAGC GCTTCGCC            TTCTTCACCCGTCCC  58 443
        pitA 4569209 .. 4569230 + -13.7  -5.78622   CAGGTTACGCGAAGA           GCGGGTCAG GTAA CTGGCCCGC            TTTTTTTTGCGCTCA 100 48
        uspA 4570323 .. 4570350 +  -9.9   -5.7946   ATTGCCTGAATGTAG       GCCGGGTAAGGCG AAGC CGCC--ACCCGGC        TTTTTTTATTCCGGG 100 47
JJN11_RS22085 4574214 .. 4574230 +  -3.7  -3.63805   GAGTAATCGCAGTCA              TCGATGG AAA CTATTGA              TTTCAGGTATACAAT  53 35
        gorA 4575661 .. 4575678 +  -9.8  -5.60993   ATGCACGTTTAAAGA             CCGGCC CTCAGT GGCCGG              TTTTTTTATGCACCC 100 59
JJN11_RS22095 4576259 .. 4576273 +  -5.7  -4.07568   TTTGATAAAAAGACA               TTGCG CATAT CGCAA               TTTTCAAAACAGAGC  64 184
JJN11_RS22105 4577417 .. 4577432 +  -3.2   -2.5632   GCTTCAACGAGGAGA              CAGAAG AAGC CCTCTG               ATTCATACTCTGTTG  42 9
JJN11_RS22110 4579307 .. 4579330 + -10.2  -3.29511   AGACTCATTGGCCTG          TACGGGGAGC CGTA GCTCCCCGCG           TTGTCAGCGGATCAC  75 11
JJN11_RS22120 4581611 .. 4581638 +    -9  -2.71011   AAGAGTACTGCTAAG        CGTGCCGCGGGG CTCC CTCCCCGGCACC         TGATTACAGGAACAT  63 27
JJN11_RS22130 4583414 .. 4583427 +  -2.3  -2.91274   ATGAAAACCTACGTT               GACTG AGCG CAGGC                TATAATTGCAATGAA  40 20
        yhjD 4584522 .. 4584555 +  -6.2  -3.32769   CCGTTAATTCCCCTA     TCGGGCTGA-ATA AGAATGAAA TATATCAGCCCGA     TTCATCATTTCAGCA  57 34
JJN11_RS22140 4586122 .. 4586177 +  -7.6   -3.7456   GATCCTTAATGCCGG GTGGCGCTGCGCTTACCCGGCCTACA TTCTCC TGTAGGCCGGGCAAA-GCCTC-CCAC TATTTCTTCATCTGC  68 39
JJN11_RS22155 4590291 .. 4590306 +    -9   -5.1166   GTATCCATTAAAAAA              GGCAAC TTAC GTTGCC               TTTTTCCTTTTACTG 100 46
        fadB NONE
        fadA 4610933 .. 4610951 +  -9.5  -5.58454   TTTAGTTGCCGTTTT             CCCGCCT GTCAG GGGCGGG             TTTTTTTCGTCTCAA 100 179
        rfaH 4614194 .. 4614211 +  -3.3  -3.85698   GCCGGTAAAACAGTG             CAGCACCG CGC CGG-GCAG             TTTATCCAGCCAGGG  55 352
JJN11_RS22295 4622952 .. 4622963 +    -3  -3.35001   CTTTAGGAAATTAAC                CATA CAGT TATG                 CTTTTCTCTCCTGTA  47 191
         hcp 4623517 .. 4623532 +  -2.5  -2.93572   ATGCTGAGGAGGAGG              CTACG GTATGA CGTGG               GTTTATAAAGTAAGT  42 15
JJN11_RS22305 NONE
JJN11_RS22310 4624462 .. 4624472 +  -2.4  -4.07687   GGCGCGCGTTTCAGG                 CCAG CCG CGGG                 TTTTCAGGCCGCAGT  56 152
        metR 4627915 .. 4627930 +  -2.4  -4.91712   GCACGCTCCACTGCA              CCGTCG TGGT CGGCAG               TTTTTGTGGGTTCCC  74 209
        rhtB 4631434 .. 4631446 +  -9.1  -2.75577   CACAAAGCTGCGTCC                GCTGG CCG CCAGC                TCCATTTTAGGCTCA  58 310
JJN11_RS22360 4635257 .. 4635274 +  -4.1  -2.50493   AATCAGGTAAAATTG             CGTGACA TATT TGTAACG              GATTTTCCTGATGGA  44 49
        rarD 4636433 .. 4636464 +  -4.4  -3.44206   GCGGCAGGAAGACCA      CCGACACCACCGAGA AGA TCTTGATGATG-CGG      TTCTGCTCGATGTTG  51 277
        cyaY 4644159 .. 4644179 +  -3.2  -4.30987   GTGGTTGGTCTCAAC            CTGTACCG ACAGA CCGTGCAG            TTTGTTGTGCGAAAT  64 501
        hemC NONE
        hemD NONE
        hemX NONE
        hemY 4650755 .. 4650772 + -12.7  -5.68438   AGCAATAATTGCACA             GGAGGCC TGAC GGCCTCC              TTTTTTATTTGCTAC 100 33
JJN11_RS22440 NONE
        rhlB NONE
        gppA 4670781 .. 4670791 +  -2.4  -4.92239   CGCATACCGGGCCTT                 CAGC CTA GCGG                 TTTTTCGCTTTTTCC  70 67
        ppiC NONE
        ppiC 4673534 .. 4673563 +  -8.5  -2.78395   GTACCGCAGATAAAA       AGCCGGGTGGCGGC TTC GCC-TTACCCGGCC       TACTTGATACAGCTT  62 28
        ilvY 4676158 .. 4676169 +  -3.6  -3.78953   GGAAGAAACGGAACG                CCGG GTTG TCGG                 TTTCGTCATGACACT  54 48
JJN11_RS22600 4684555 .. 4684568 +  -9.5  -5.15167   GCTGGCATAAAAAAA               GGGGC CTTA GCCCC                TTTTTATTAATCGTC 100 31
        hdfR 4686043 .. 4686069 + -12.4   -3.6682   CTAAATTTCTTACTA         CTAAGCCTGCTA ATG TAGCAGACTTAG         TTTAAATAAGTGGCG  88 215
        trmA 4695706 .. 4695719 +  -9.5  -4.58395   GGCCGGATAAACGAA               GCGCC ATCC GGCGC                TTTTTGGCAGGTGGC  91 40
        sthA 4698480 .. 4698493 +  -5.2  -3.18264   CCAGGCCAATGGTAC               GCCG CGGCTC CGGC                TTGATACATGGCAGA  51 130
        argE 4704047 .. 4704076 +  -5.7    -2.867   TGCTGGCATTAATGA       CTGTTCCCCTCTT TCGC GAGAGGGGAAAAA        TCTCATGATCTTCGT  52 29
         ppc 4706963 .. 4706981 + -14.6  -5.71983   AACCTGATGTAATCA             GGCCACAC TAT GTGTGGCC             TTTTTTTATGCTTAC 100 46
JJN11_RS22705 4708095 .. 4708119 +  -2.9  -3.71284   AATCCCTAACGCCCC         CTGGGTT-TC GATACG GACAGCCCAG          TTCTCTTGCTGACAA  52 234
        ptsP NONE
         fsa NONE
JJN11_RS22745 4717531 .. 4717548 + -12.7  -4.49756   CGCCGGGCAAAAAAA             TCCCCGC CGGA GCGGGGA              TTTTCCTGTTTACAG 100 111
        metJ 4725182 .. 4725195 +  -9.5  -5.75342   ACAGATACAAAAAAA               GCGCC TTGC GGCGC                TTTTTTTTCGGGAAA 100 44
        priA 4727866 .. 4727876 +  -2.6    -3.494   AACACGACTCACACT                 TTTT ATG AAAA                 TTCTGTAACCGCTTC  49 70
        cytR 4729008 .. 4729022 +  -3.4  -2.55015   TTCAGACGTCCTCAT               CTGGTC AAA GGCCCG               TCGCTTAAGTAACAT  42 52
        ftsN 4730113 .. 4730134 + -15.9  -2.63891   CTATCATTCTATTCA           GCCCTGAGC ACTG GCTCAGGGC            CTCTATTTTCCGAAT 100 62
        hslV NONE
        hslU 4732073 .. 4732090 +  -9.1  -5.06816   TTTCATCACAAATGA             TGGGGCT GAAA GGCCCCA              TTTTTATTGGCACAT 100 56
        menA 4733044 .. 4733058 +  -5.8  -3.08032   ATTAGCTGACAAATA               TCAATT AAC AATTGA               TGATTTTGCCAACAA  53 36
        rraA 4733618 .. 4733640 + -10.6  -5.69379   TTGAGTAGAAAAAAA           GGCCATCTGT TAT GTAGATGGCC           TTTTTTTAATTATCT 100 33
JJN11_RS22830 NONE
        glpK 4737843 .. 4737872 +    -5  -2.95223   CCCCCTCACCCCGTC      G-GGGTGAGG-GGT CCAA ACCGCCTCTCCCAC       TCTGTGATAAACTTC  49 46
        glpX NONE
         fpr 4740233 .. 4740244 +  -5.8  -4.07568   CGCGTAGTTTACCCT                GGAG TCGC CTCC                 TTTTGACAAGCCAGC  66 486
JJN11_RS22855 4740956 .. 4740975 +    -7  -2.57354   CTGATTCACAGACCA            TGCTGCCC TGTC GGGCGGCC             ATATTCCTTAATTCG  56 79
        tpiA 4741831 .. 4741857 + -14.5   -5.0133   CCTACGATACTCCAG        GCCCGGTAAGCG CCAG CGCT-ACCGGGC         TTTTTTACAGCCGTC 100 76
        cpxR NONE
        cpxA 4750227 .. 4750256 +  -8.5  -2.90615   AGTTGTCGCCTGTTA       TGCCGGGTGGCGGC TTC GCC-TTACCCGGCC       TGGTTTCCCCACAAT  62 39
        rhaB NONE
        rhaA 4756638 .. 4756663 + -12.5  -3.04715   TACGTTTAGCTGTAG         GCCCGGCAAGCG AAG CGCC-GCCGGGC         GTTTTCAAAGGAATC  81 76
        rhaD NONE
        rhaS 4758583 .. 4758633 + -11.3  -2.78596   TCAAAAATCTTCTGA TGCG-TTTTGTAGGCCGGATAAGCG TAG CGCC-ATCCGGCCTACAAAATCCCC TATGGTGGAGAACTA  74 26
JJN11_RS22945 NONE
JJN11_RS22950 NONE
JJN11_RS22955 4762158 .. 4762171 +  -5.9  -2.87132   GCGAAGACGGATCTA               GTGCC GGGT GGCGC                TGTGTACAAGCGCAG  52 25
        fucO NONE
        rhaM 4763689 .. 4763726 +  -7.5  -2.52635   TTTTACCTGGCCTGA   TGTGTTAACGCTGCCGC GTTC GCGGCAGCGATCTCCCG    CTTACTGCTCAACGT  56 26
JJN11_RS22990 NONE
JJN11_RS22995 4769877 .. 4769891 + -12.8  -3.35046   GCATAAACTAAAAAA               GCGCCC CGG GGGCGC               TCTTTCGACAGATGC  87 30
        fdnG NONE
        fdxH NONE
        fdoI NONE
        fdhE 4777053 .. 4777063 +  -5.4   -4.2361   CCGGCCTACAGTACG                 TGCA CGC TGCA                 TTTTAGGATTCTGTT  66 75
JJN11_RS23030 4778839 .. 4778863 +  -2.7  -4.14243   TTTAACCTGAATATG          GCGCTATGACG ATG CGCTATGGCGA          TTTTACGGTCCACTG  59 17
JJN11_RS23035 NONE
JJN11_RS23040 4788007 .. 4788017 +  -3.2  -4.82756   TGCTCGTCCAGATTG                 GGAC AGA GTTC                 TTTTATTCATTGTAT  69 119
JJN11_RS23045 4788763 .. 4788777 +  -3.6  -3.14211   TAACTTAATGACTTT               GTTGTT GAG AATAAC               TTAATGAAGAAAAGT  46 48
JJN11_RS23050 NONE
JJN11_RS23055 NONE
JJN11_RS23060 4791322 .. 4791335 +  -8.1  -3.72576   ATAGGTCCCTTCAAA               CACCG CGCC CGGTG                TTTCATCGCCGAACA  66 169
        yihU NONE
        yihT NONE
        yihS NONE
JJN11_RS23110 NONE
JJN11_RS23115 NONE
JJN11_RS23120 4804144 .. 4804172 +  -2.9  -4.68132   AAATCCGGCCATTAA        TCCCTTCCCTCTC TAT GGGAGGGGTGGCC        TTTCTTTATCTGTTA  68 45
        ompL 4804894 .. 4804913 + -13.6  -4.65895   CGTTCTAATAAAAAA            GCCGCTGA TCGC TCAGCGGC             TTTTTACCTGCCGGG 100 33
        glnA 4808663 .. 4808680 + -11.3  -5.00616   CGTGGAAACTTTTCA             GCCCATC TTCG GATGGGC              TTTTTTCACCGCCAA 100 101
        glnL NONE
        glnG 4811283 .. 4811306 +  -8.2  -3.86916   AAGAGAGTTAATTAA          GCGCAAAGTG ATGC TATTTTGCGC           TTTACTGTACTGATG  73 59
JJN11_RS23150 4811897 .. 4811908 +  -5.8    -4.208   CACCTGCTGATAGTA                GAGC TTCA GCTC                 TTTCTGGTTTTGCGC  66 439
        yihA 4814847 .. 4814864 +  -9.8  -5.78622   GATGAGTAAAGATGA             GCGCGG CGATGT CCGCGC              TTTTTTTTGCGCTGA 100 32
JJN11_RS23175 4819278 .. 4819296 +   -16  -5.13527   AGCCCAATACAACAA             CGCCGGTC ATT GACCGGCG             TTTTCTTTATTACTT 100 13
        mobA NONE
        mobB 4822445 .. 4822472 +  -9.9  -5.00616   ATGAGGTCAAAGTAG       GCCGGGTAAGGCG AAGC CGCC--ACCCGGC        TTTTTTAACGCCCAA 100 26
JJN11_RS23230 NONE
        mdtD 4830795 .. 4830821 +  -7.8  -4.36914   CCATCGCCACCAGGA         ACCCTTCCAGCC GCA GGCGGGCAGGGG         TTTTATCCAGCGGAC  77 389
        ravA NONE
        viaA 4841465 .. 4841477 +  -3.3  -2.70932   TAGCCGCCTGCTGCG                GCGCT GGA AACGC                TAATTACAGCAGGGC  42 10
        asnC NONE
        mioC 4843707 .. 4843729 +  -2.7  -2.79133   ACCCGTGATGACTTT           TTGTGCTGT GTATA ACATCACGA           TCTGATCCCAGCTTA  42 110
        mnmG 4845870 .. 4845881 +  -7.2  -3.44325   AAAACAGGGTATGCT                GCGC CGCA GCGC                 TTAATTGTAAGAACT  64 10
        rsmG 4846996 .. 4847011 +  -5.4  -3.76413   TGCACGCTTTATCGT              CAACGT TTCC GCGTTG               TTTGCAGTTTTGACG  59 407
        atpI NONE
        atpB NONE
        atpE NONE
        atpF NONE
        atpH NONE
        atpA NONE
        atpG 4852242 .. 4852257 +  -2.4  -3.56594   CTCACCGAGATCGTC              TCGGGG GCCG CCGCGG               TTTAACCAGGTTTAC  47 5
        atpD NONE
JJN11_RS23350 4854138 .. 4854160 + -17.8  -5.65177   CTTGAAAGCACGAAA           GCCAGTCTGG TCT CCAGACTGGC           TTTTTTTATGGATCT 100 47
        glmU 4858409 .. 4858422 +  -2.3  -3.05343   AGGTCAGCGACAACG               CAGGC GAAA GCCTC                TATTCGGAATCTAAA  42 173
        glmS 4860280 .. 4860299 + -13.6  -5.71983   GAGTAATCCTCTCAG            GCTCCACC TTCG GGTGGAGC             TTTTTTTATCCTTCC 100 35
        pstS 4861697 .. 4861729 +  -2.6  -3.15249   CTACGGTTCCGACTG     TAGGCCCGG-CAAGC GTAA GCGTCACCGGGCATA      TTCGTAAGACGTCTC  45 89
        pstC NONE
        pstA NONE
        pstB 4864419 .. 4864429 +  -2.4  -2.71731   AAGACTACATCACCG                 GACG CTA CGGC                 TGATTCAGGAGTGCG  39 12
        phoU 4865186 .. 4865209 + -15.4  -4.11183   AATAACCTCCTTTCA          TCACGCCAGT ACTT ACTGGCGTGA           TTATTTCTGGTGCAA 100 39
JJN11_RS23395 4866486 .. 4866507 + -17.3  -2.94032   TAAGTAAAAATATCA           GCCCTCCCC GTTC GGGGAGGGC            ATTTGCTTAGCGGGT 100 34
        adeP 4868686 .. 4868716 +  -9.8  -4.94222   ATCGACGCGTAATAA       AAAAAGCCCTTTTC TCA GAAAAGGGCTTTAA       TTTTTGTCCCTTCTT 100 29
        rpmH NONE
        rnpA NONE
        yidD NONE
        yidC 4877124 .. 4877141 - -12.7   -5.5074   TAACGCAATAAAAAA             GGCGGTC TGAT GACCGCC              TTTATTTTAGCTACA 100 53
        mnmE 4875677 .. 4875704 -   -15  -5.56263   ATGAGAAAAGAAAAA        GCCGCAATAACA GCGA TGCTATTGCGGC         TTTTTTGCAGTTAAC 100 51
        tnaA NONE
        tnaB 4872425 .. 4872445 - -15.5  -3.72576   TTTCCTGGCAGGAAA            GCCACCTCA GCG TGAGGTGGC            TTACAGGAACGCAGG 100 46
JJN11_RS23425 NONE
        yidZ NONE
JJN11_RS23415 NONE
JJN11_RS23410 4868691 .. 4868711 - -14.1   -5.7946   CGCGTAATAAAAAAA            GCCCTTTTC TCA GAAAAGGGC            TTTAATTTTTGTCCC 100 46
        yieH 4866486 .. 4866507 - -17.3  -3.05624   TAAGTAAAAATATCA           GCCCTCCCC GTTC GGGGAGGGC            ATTTGCTTAGCGGGT 100 32
JJN11_RS23355 4854138 .. 4854160 - -17.8   -3.8901   CTTGAAAGCACGAAA           GCCAGTCTGG TCT CCAGACTGGC           TTTTTTTATGGATCT 100 322
        asnA 4840977 .. 4840991 -  -5.6  -3.15861   CAGGATTTCGACGAA               CAACCC CGC GGGCCG               TTTATCGTCTGCGTG  49 515
         kup NONE
        rbsD NONE
        rbsA NONE
        rbsC NONE
        rbsB 4832344 .. 4832369 - -10.3  -2.94218   AGTGTCCATCAGAGA         GTGCCACCGGG ATGC CCCGGTGGCGT          ATGCCACTCTTTTCT  72 86
        rbsK NONE
        rbsR 4830261 .. 4830284 - -10.4  -2.77899   CGTTTTTATGAAGGA          TTCGACAGCA CAAA TACTGTCGAA           CAGTTTCACTTCACC  63 138
JJN11_RS23225 4826238 .. 4826251 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGGCAGGTTCTT  39 46
JJN11_RS23220 4826077 .. 4826090 -  -5.3  -2.55351   CGTGGTGACACGAAG               CATAC TGAA GTATG                TGAGTGTCGCCGCAA  48 60
JJN11_RS23215 4825888 .. 4825921 -  -6.7  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGCGCACCT TCGC AGGTACACTCTGAAG      TTTTCAGGTTTTCGC  77 49
JJN11_RS23210 4822823 .. 4822837 -  -6.4  -2.64651   AATCTCTCAAATCCA               CCGAAA CAG CTTCGG               CGTTGTAAGGTTAAG  53 32
         rrf 4822496 .. 4822515 - -13.6  -4.74103   CGCCCAACGCAAAAA            GCCCATCC GTGA GGATGGGC             TTTCGGCTTTAATTG 100 43
JJN11_RS23190 NONE
JJN11_RS23185 NONE
        dsbA 4819278 .. 4819296 -   -16  -3.96842   AGCCCAATACAACAA             CGCCGGTC ATT GACCGGCG             TTTTCTTTATTACTT 100 35
        polA 4814904 .. 4814929 - -19.1   -5.4505   TGCCGCAATAAAAAA         CGCCCCAGTCA TTAC TGACTGGGGCG          GCTAAAATATTCAGC 100 249
        yihI 4813000 .. 4813036 -    -5  -3.14132   TGTGCGGGCCATGAA   TCGGGTG-CGCAGCCAC TTCT GTCGCCGCGACAACCGC    CGTAGTTTAACGAAT  50 109
        hemN 4811125 .. 4811158 -  -5.2  -3.57263   AGGCGCAGCCCGAAA     TGGAGC-GCACGCTG CTGAC CACCGCGCTGCGCCA     TACCCAGGGCCACAA  55 425
        typA 4804894 .. 4804913 - -13.6   -5.4505   CGTTCTAATAAAAAA            GCCGCTGA TCGC TCAGCGGC             TTTTTACCTGCCGGG 100 78
JJN11_RS23090 NONE
JJN11_RS23085 4794228 .. 4794252 -   -15  -3.75884   GCTTAAAGAAAGGAA          CGGCCCGACG CTCAC CGTCGGACCG          GAAGAGGGTTAACCC  95 34
        yihX 4793551 .. 4793561 -  -3.2  -3.40403   CGTTTTTTAGCATAA                 CTGC TTC GCAA                 AGTAGTTCGGTATCG  48 6
JJN11_RS23075 NONE
         dtd NONE
        fabY 4791203 .. 4791236 -  -2.5    -4.371   CTGACGATATGAAAA     TGAGAGTTACC TCTTTTACCACC GGTAACTCTCG      AACCCGGACACTACT  61 36
        fdhD NONE
JJN11_RS23000 4769877 .. 4769891 - -12.8  -5.42514   GCATAAACTAAAAAA               GCGCCC CGG GGGCGC               TCTTTCGACAGATGC 100 48
JJN11_RS22985 NONE
JJN11_RS22980 4767163 .. 4767185 -    -7  -3.60098   AGTGTTGATCCGAAA           CGTTTCGGAT ACA AACCAAAACG           TTTCGGATTTGTGAT  64 63
JJN11_RS22975 4764970 .. 4764987 - -14.1  -2.53263   TTTATCCTCAACTCA             GGGCCGG TTGC CCGGCCC              GTTACCCTTATACGC  87 33
JJN11_RS22970 4763643 .. 4763664 - -15.9  -3.33261   CGCTAACCCGGACAA           CAGCCCGGT GAGC ACCGGGCTG            AAAGAGGTGTTTTAC 100 37
        rhaS 4752659 .. 4752669 -  -2.4  -3.32844   CCTGCCACGTCACAA                 CCTC ACC GGGG                 AATAACCTGACATTA  45 81
        rhaR 4751697 .. 4751713 -  -2.3  -3.06399   GTTAATTAAATGATA              TTGAAAA TGT TTATCAA              TGCCGTAGTTTTAAT  42 115
        sodA 4750956 .. 4750973 - -11.3  -5.76633   TCAGATACAAAAAAA             GCGAGTC ATCA GACTCGC              TTCTCACAGAAGGCT 100 49
        yiiM 4750148 .. 4750163 -  -8.2  -3.53012   CGCGGCTGGGTGAAA              GCGGAC GACA GCCCGC               TGGGTGGATTGCGTT  62 109
        cpxP 4747438 .. 4747456 - -14.6  -5.76949   GATGGGCAAAAAAAA             CCCCCACA TCA TGTGGGGG             AAGACAGGGATGGTG 100 63
        fieF NONE
        pfkA 4745210 .. 4745237 -  -6.3  -5.26316   TGAGCGCACAAAAAA       GCCGGGT--GGCA GCTA CGCCTTACCCGGC        CCACTAACCATGCTT  91 85
JJN11_RS22875 4744046 .. 4744068 -  -9.9  -5.68438   TGACCAAATAAAAAA          CCCGGTG-GA TTTC TCACACCGGG           TCCCGTGTCGTTCTT 100 51
JJN11_RS22870 4743160 .. 4743217 -  -6.3  -2.92192   GGTGAGTGAACCAGA GCGACATGCCTGTCTCCTGTAGAATT TTTCAGC AAGTCTAC-GGCGACAGGCAGGGCGA GTAAACGCTATTTAT  55 33
JJN11_RS22865 4741364 .. 4741378 -  -4.2  -3.53012   TTCGCTGTGCTGAAA               GAGCAG GGT CTGATC               CCGGTTCTGTGCATC  51 509
JJN11_RS22850 4739598 .. 4739617 -  -4.2  -4.18018   GGCCCTGATTGAAAA            TGGCGAGCT GGA AGC-CGCCG            TGGGTCTGAAGATGG  62 181
        zapB 4734756 .. 4734774 - -13.2  -5.79595   CTGCAAAATAAAAAA             GGCATCCA TTG TGGATGCC             TTTTTCAGGAATTCG 100 44
JJN11_RS22820 NONE
JJN11_RS22815 4733618 .. 4733640 -  -9.2  -5.67063   TTGAGTAGAAAAAAA           GGCCATCT GTTATGT AGATGGCC           TTTTTTTAATTATCT 100 31
        rpmE 4725182 .. 4725195 -  -9.5  -5.77988   ACAGATACAAAAAAA               GCGCC TTGC GGCGC                TTTTTTTTCGGGAAA 100 42
        metB NONE
JJN11_RS22760 4720937 .. 4720964 -  -9.8  -4.63089   GATGGGAAAAAAGAA        GGCCCGGTAAGCG TTG CGC-CACCGGGCA        TAGGGCTTTACAGCA  91 33
        metF 4719847 .. 4719866 -  -9.3  -5.63517   GGCTGAAATAAAAAA            GCCCTCA TCTTAC TGAGGGC             CTGGTTTTTACAGAC 100 33
        katG 4717531 .. 4717548 - -12.7  -5.40072   CGCCGGGCAAAAAAA             TCCCCGC CGGA GCGGGGA              TTTTCCTGTTTACAG 100 35
JJN11_RS22730 NONE
JJN11_RS22725 4711396 .. 4711417 - -12.9  -3.77806   CGGTAGAGGAAAACA           CTCCCGCCC CTCA GGGCGGGTG            GAGATCAGGCAGTTT  90 30
JJN11_RS22720 NONE
JJN11_RS22715 NONE
JJN11_RS22710 4707429 .. 4707444 -  -2.5  -3.73968   AAACGCTGCACGAAA              TGCAG ATGCAG CCGCA               GGAGCAGCAGACCGC  51 454
        argC NONE
        argB NONE
        argH 4699499 .. 4699517 - -10.3  -5.00616   TTTTTGCGTAAAAAA             GCCCAAC ACAGG GTTGGGC             TTTGGTTTGTAGGTC 100 76
        oxyR 4698268 .. 4698285 -  -3.3  -4.75372   ATCATGGAGCAAAAA             GGTGGCG GTAA CACCATC              GAATACTTTGTTAAT  73 98
        fabR NONE
JJN11_RS22660 4695594 .. 4695621 -   -12  -3.45839   ACCTGGAAACATTAA        GCCAGACGCACA AGGT TGAACGTCTGGC         TCTGTTCGATCAGTT  76 174
        btuB NONE
        murI 4691418 .. 4691430 -  -4.8   -3.1355   CTCATTCAGAGTCAA                GCGA TTATT TCGC                GCTTTTCTCTGCCGG  50 186
JJN11_RS22640 4689578 .. 4689594 -  -6.5  -2.55847   AACCGCTAGACGAAG              GGGACAC GAG GTGTCAC              GACTTCGCAGCCGTC  52 101
JJN11_RS22635 4689436 .. 4689472 - -13.4  -4.00532   TTTTTAAAGAGCAAA   TATCTCAAA-CATGACT CTGA AGTCATGTTTTGAGATA    CTGATTGGTTGTGCC 100 61
JJN11_RS22630 4686371 .. 4686385 -  -6.4  -2.64274   ATCTTCTCAAATCCA               CCGAAA CAG CTTCGG               CGTTGTAAGGTTAAG  53 32
         rrf 4686177 .. 4686193 -  -2.2  -2.83449   ATACTTCTACAACTA              CCGG TTTATTGCC CCGG              TTTACTACGTAATTT  40 44
JJN11_RS22620 4686047 .. 4686065 -  -9.6  -3.21218   ATTTCTTACTACTAA             GCCTGCTA ATG TAGCAGAC             TTAGTTTAAATAAGT  70 40
JJN11_RS22615 4685925 .. 4685944 -  -8.6     -6.13   ACAGGCAAAAAAAAA            TCCTTCGC CGAA GCAAAGGA             TTCTTTATATGGCAG 100 35
JJN11_RS22605 4684555 .. 4684568 -  -9.5  -5.60993   GCTGGCATAAAAAAA               GGGGC CTTA GCCCC                TTTTTATTAATCGTC 100 32
        ilvL 4682540 .. 4682563 - -13.8  -5.63504   AAGGTCATAAAAAAA          CCCCCGGACC TTTC GGTGCGGGGG           TCTTAGTTCGTTAAG 100 50
        ilvX NONE
        ilvG NONE
        ilvM NONE
        ilvE 4679559 .. 4679580 - -11.6  -3.55444   CGTCTATCTGGTAAA           TGGGACGG TGCGTG CCGTCCCA            TATTTATGCTTATGG  83 35
        ilvD NONE
        ilvA 4676081 .. 4676097 -  -9.4  -5.60993   CTGCGCACAAAAAAA              GCGGCT GCATG AGCCGC              TTATTGATGCGTTCT 100 60
        ilvC 4673535 .. 4673562 -  -9.9   -4.9792   TACCGCAGATAAAAA       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTACTTGATACAGCT 100 81
         rep 4670505 .. 4670519 -  -8.5  -4.30576   GCTCCACCAGCAAAA               CGCGG TTCCG CCGCG               CGTGGCGGAACATCT  81 291
        trxA 4667454 .. 4667501 -  -7.6  -3.10715   CTTAGCACGACTCAA GCCGGGCGTCCAGAGATCCAAA CAAT TTAGAAACCCTGGACGCACAGA CGAGAAGCCTTACGC  62 35
         rho 4665875 .. 4665894 - -13.6  -5.54907   GCCATAAAAGAAAAA            CGCCACGT AAAA ACGTGGCG             TTTCGGCGCTTTATT 100 45
        wecA NONE
        wzzE 4663473 .. 4663499 - -11.6  -3.14211   ATTCTCTTCGATTAA         GCGATGAAGGCC AGC AGCCTTCATCGT         AGACGGCGTTCTTAA  79 37
        wecB NONE
        wecC NONE
        rffC NONE
        rffA NONE
        wzxE 4657997 .. 4658010 -  -2.3  -2.74012   CCAGGACGTGAATCA               GTGCA GTCA TGCGC                GTTTATGCCAAAGTA  39 18
JJN11_RS22480 NONE
        wzyE NONE
        rffM 4654806 .. 4654816 -  -6.8  -2.82635   AGCGCGAGCAGTATA                 TCGC GCT GCGA                 TTCAGATATTACAGG  54 34
JJN11_RS22465 NONE
JJN11_RS22460 4652969 .. 4652986 -  -2.5  -2.76322   CTACTTAACAGACCA             CCGCAGC TCCA GCACCGG              GTGAATGGTGCGCCC  40 31
JJN11_RS22455 NONE
JJN11_RS22450 NONE
JJN11_RS22445 4652590 .. 4652605 - -11.8  -5.86976   GCAGAAAACAAAAAA              CCCCGC CGAA GCGGGG               TTCAAAATTGGTCGG 100 34
        cyaA 4643285 .. 4643296 -  -4.4  -4.49337   GGAGAAGGCACAAAA                GCAA GAGT TTGC                 CGCTAACCTGCAACC  68 504
JJN11_RS22405 NONE
        dapF NONE
JJN11_RS22395 NONE
        xerC NONE
        yigB 4639776 .. 4639787 -  -7.2  -4.20042   AGGAACACTGCAAAA                CGCC CGCT GGCG                 CTTCGCTTACCGGGC  73 85
        uvrD 4637519 .. 4637540 - -10.3  -4.20918   CTGAAGGGTAATAAA           TAGCCTTAT ACAT ATAAGGCTA            GCAGATAGTTACAAA  85 62
JJN11_RS22375 4637343 .. 4637374 -    -8  -2.82623   TGTCGCTGACAACCA      CTAAGGCCATCAGC GTGA GGAGATAGCCTTAG       GAGTTGTTCCTGGAT  59 4
        corA 4635797 .. 4635809 -  -2.6  -3.87608   GGTACGTAAAAAAAT                CGCC GTCGA AGCG                CAAACCGGGATGCTG  53 488
        pldA 4633685 .. 4633706 - -12.3  -4.54727   TGCCCGAAATTAAAA           CAGGCGCTA TTTT CAGCGCCTG            CGAGAGAAACTTCAA 100 68
        recQ 4631800 .. 4631827 -  -5.5  -3.18582   TAGTTCAGGGAGCAA        TCATCCTGGCA CTTTTT TGCCGGGCTGA         CTACTCCTCATCATC  52 26
        rhtC 4631060 .. 4631081 -  -5.1  -3.76224   GCGGCATGGATTAAA           GGGCC-TCGT CAG ATGAAGGCCC           TGAATAAAGTGTTCG  56 90
        pldB 4629410 .. 4629424 -  -2.8  -3.61674   GGTACATAGAAAAAT               TTAACC TCT GGTGAA               TATCAGTTATGCCTG  49 28
        yigL 4628507 .. 4628562 -  -7.9  -2.58427   AATAGTGGTGATAAT GAGTAGCGCCACAATGCTTGT-C-TCTT GAA AAGATGGACAGGCATTGTAGCGA-ACTC CGCGGTTGACAACTG  58 64
JJN11_RS22325 4627541 .. 4627553 -  -4.8  -3.40403   TGGTGGTGACCAGAA                CCCT GGGCG AGGG                ATTATGGAGCCGGTT  52 91
        metE 4624347 .. 4624394 -  -9.7  -3.20435   TTAATTATTCAGGAA GGTCGTACGTAGGCCGGGCAGC CACAC GCCGCCCGGCAAACGTGTG-CC AGGGTTAACCCTGCC  70 30
         udp 4620932 .. 4620948 -  -9.4  -5.30616   CTACGCAAAGAAAAA              GGCCGA ACGGG TCGGCC              TTTGGCAAAGAAAAG 100 47
        rmuC 4619361 .. 4619378 -  -2.6  -3.11326   GAGAAGTGTAACAGA             TTGGGC GAATTT GCCCTA              CGATTCAACCACCCC  45 53
        ubiE 4618542 .. 4618553 -  -3.6  -3.58037   GATCAAGGGTTTAAA                CGGC ATCT GCCA                 CCTCCACTCAGAACT  50 33
        ubiJ NONE
        ubiB 4616263 .. 4616286 -   -11  -2.92669   ATGATAAATTAATCA          GGCCGCATTA TACG TTATGCGGCC           CTGCGATAGCGATGC  74 44
        tatA NONE
        tatB NONE
        tatC 4614663 .. 4614684 - -15.9  -2.62184   CTCGCTCCCATATGA           CAACCGCCC TGGC GGGCGGTTG            GTTTTATTCTTCTGA 100 29
        tatD 4613676 .. 4613690 -  -2.1  -3.85698   CTCTCGGTTTATAAA              CA-GCC AGAA GGCATG               ACCGATCCTGATACG  53 199
        ubiD NONE
         fre 4610972 .. 4610986 -  -3.5  -4.41348   TTCGTCTCAAATAAA               GGCAA ATGCG TCGCC               AAACAGACGATCTTC  63 2
        pepQ NONE
JJN11_RS22215 NONE
        trkH 4603773 .. 4603784 -    -3  -2.75941   GAAAATAGAATTAAT                GTTT TCAC AAAC                 GGCTCCCTTATTCGC  42 33
        hemG 4603107 .. 4603125 -  -5.8  -3.05596   GAGGTTCTTACCGAA             CCCCGCTG ACC CGGCGGCG             TGTTTGCCGTTGTTC  53 138
JJN11_RS22200 4601229 .. 4601245 -  -6.5  -2.55847   AACCGCTAGACGAAG              GGGACAC GAG GTGTCAC              GACTTCGCAGCCGTC  52 101
JJN11_RS22195 4601087 .. 4601123 - -13.4  -4.00532   TTTTTAAAGAGCAAA   TATCTCAAA-CATGACT CTGA AGTCATGTTTTGAGATA    CTGATTGGTTGTGCC 100 61
JJN11_RS22190 4598022 .. 4598036 -  -6.4  -2.64651   AATCTCTCAAATCCA               CCGAAA CAG CTTCGG               CGTTGTAAGGTTAAG  53 32
         rrf 4597688 .. 4597721 - -16.1  -2.98582   AGAATACGCAGAAAC     GCAAAAAGCCCATCC GTGA GGATGGGCTTTCGGC      TTTAATTGATGCCTG 100 36
        murB NONE
        birA 4595582 .. 4595602 - -18.3  -2.79785   GTATAGCTGAAGAAC            CGGGGAGCC CGC GGCTCCCCG            CAATTTATTCGGCGC 100 30
        hmsP 4593277 .. 4593312 -  -6.1  -4.63218   TCCTTGGGAAGAAAA    GCCGCAGGAAATGTAG GGTTA CC-CGTTACCTGCGGC    CTTAAAATACCACCC  75 127
        dctA 4591776 .. 4591800 -  -8.6  -4.15222   ATTCCTGGTAACAAA          GAGTGCCACA CGCCC TGTCGCACTC          TAAATATGATGTACA  77 194
        pdeH 4588300 .. 4588314 -  -7.1  -3.61517   AGCGTCCCGTAATAA               CGCGT TAACC ACGCG               CTATTACGGGAAGCT  64 49
JJN11_RS22145 4585917 .. 4585927 -  -3.2  -3.05384   CTGTTCCCGACCGAA                 GTGC GTT ACAC                 GGGCGCCTCCTTCTC  43 275
JJN11_RS22125 4581300 .. 4581315 - -10.4  -2.86271   GCGCGATCACAATCA              GACCCC GCTT GGGGTC               ACGGGCTATATTCAT  63 352
JJN11_RS22115 4578992 .. 4579008 -  -4.4  -4.09685   TCCGACGCGGTAAAA             GCGCGTC TCCT GACGC-C              GGGCGGTATCCTTGC  62 351
JJN11_RS22100 4575661 .. 4575678 -  -9.8  -3.36694   ATGCACGTTTAAAGA             CCGGCC CTCAGT GGCCGG              TTTTTTTATGCACCC  73 464
        prlC 4571097 .. 4571108 -  -4.4  -3.39895   TGTTTCATCAACTAA                GTGA ATCT TCAC                 GAATCAACTAACCCT  50 33
        rsmJ 4570322 .. 4570351 -  -8.5  -2.52676   GATTGCCTGAATGTA       GGCCGGGTAA-GGC GAA GCCGCCACCCGGCT       TTTTTTATTCCGGGG  60 30
        uspB 4569209 .. 4569230 - -11.5  -3.06162   CAGGTTACGCGAAGA           GCGGGTCAG GTAA CTGGCCCGC            TTTTTTTTGCGCTCA  78 38
JJN11_RS22055 4566165 .. 4566192 - -16.4  -3.28783   TGAAAAGTAACGCAA        TACGCCCTGCTC AGCT GAACAGGGCGTA         AAATAGCGGAACGTT 100 99
JJN11_RS22050 4565677 .. 4565690 -  -3.8  -4.07568   CTTCTCCCCTTAAAA               CGCA TAACCC TGCG                TGAGGGAGTGTACTT  60 75
JJN11_RS22045 4564507 .. 4564529 -  -7.7     -3.67   TCAAGCCGTAAAAGA           TGCCGGG TGTTGTAGG CCCGGCA           AGCGTAGCGCCGCCG  68 52
JJN11_RS22025 4561274 .. 4561288 -    -7  -3.36515   GGCGATCGTCAAACA               GCGCGG CGG CAGCGC               CTGGCAGATTGTCAG  58 167
        tusA 4541862 .. 4541880 -  -4.6  -4.20883   CAAAAAGCGCTAAAA             TTTGAAAC AAT GGTTCAAA             TTGGTGATGGAGTTC  64 151
JJN11_RS21905 NONE
JJN11_RS21900 4540231 .. 4540245 -  -4.2  -4.89477   GGGTGAATAACAAAA               CAAAGG CAT CCATTG               TTCACCCCTTAACTG  74 34
JJN11_RS21895 4538882 .. 4538909 -  -9.9  -5.12068   CAGAGGTAAGAAAAA       GCCCGGT--GGCG GCTG CGCCTTACCGGGC        CTACGATTTTCCAGG 100 73
JJN11_RS21880 4535322 .. 4535346 -  -3.4   -5.0538   GGTGATGCTAAAAAA          CGGCATACCG AAAGA CGGTCCGCAG          ATGACCGGCTGGCAG  78 182
        ftsY NONE
        ftsE NONE
        ftsX 4531164 .. 4531204 -  -7.5  -2.96366   CAGAGTCAACGAAAG  GCTCTTTCCCTGCACGGTG ATT CTCAATGCAGGGAAAGATT  ATACCAGAGATTTTT  59 40
        rpoH 4530064 .. 4530085 - -10.9  -5.55855   GCTAAAAAAACAAAA           CCCCCGAAT TTGC ATTCGAGGG            TTATCGGGGAACTTC 100 48
JJN11_RS21845 4528683 .. 4528706 - -15.3  -4.92791   GAGAAGATAAGAAAA          GGGCGAGCG TTTCAT CGCTCGCCC           TGAGGATTATTTGGC 100 32
JJN11_RS21840 NONE
JJN11_RS21835 4525972 .. 4525990 -  -8.8  -3.53012   GCGGCGGTTCTGAAA             CGGCGTGA CGG TGACGCCG             TGCTGCTTCGCCAGC  69 379
JJN11_RS21825 4524393 .. 4524414 -  -9.5  -3.27653   ATTCTGACCACAATA           CAGACCTAT AAAC ATAGGCCTG            TTATACTATAAATAC  73 56
JJN11_RS21820 4523482 .. 4523493 -  -7.2  -2.52464   GCGTGCGTGAAGTCA                CGCG TCGT CGCG                 GCGTAGGGCAATATC  50 201
        livK NONE
        livH NONE
        livM 4519480 .. 4519493 -  -3.1  -2.90403   TTAACGGATAATAAT               GGC-TG ACT CATGCC               TGCTCTCCTTTTGTC  42 19
        livG NONE
        livF 4517925 .. 4517952 -  -9.9  -4.62069   GGTTTATGTGAAAAA       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTGGGCGATCCCGTA  91 81
        ugpB 4516369 .. 4516399 -  -6.2  -3.03124   TTGTATTCCTGAACA     GCGCCGGGT--GGCG GCTA CGCCTTACCCGGC-C      TACGGTCTTCCAGGC  53 73
        ugpA NONE
        ugpE NONE
JJN11_RS21770 NONE
        ugpQ 4512770 .. 4512788 -  -8.8  -3.14693   TGCAGCAGCAACATA             TGCTGCCG CAG CGGCAGAA             TGGCGACATGCTCAA  64 47
         ggt 4510426 .. 4510446 -  -5.4  -3.07895   GGCACCGGGAAGAGA            TTCGCCCT GCGTG ACGGCGAA            TTTGTGGATGCGCTC  49 144
JJN11_RS21740 4507816 .. 4507858 -  -4.1  -3.07755   ATAGAGGGTGAAAAT TGACTCCTCTGTTCAAAAT ATCTG AACAAGCACAGAGGAGTCA TTCAGGCTTATCGGG  47 33
JJN11_RS21735 4507008 .. 4507039 - -16.7  -2.95896   TTATCACGGACAAAG      CGCAACCTTCCCC GTTTAA AGGGAAGGTTGCG       TAATTATTTAGACCG 100 33
        gntR 4505868 .. 4505879 -    -3  -3.04144   TTGTTACGGGTAACA                GTTA TCGG TAAC                 ATTGTCCTGCCGGGG  43 107
        gntK NONE
        gntU 4503916 .. 4503943 -  -9.9  -5.28176   TGCACGCACAAAAAA       GCCGGGT--GGCG GCTA CGCCTTACCCGGC        CTACGGTTTACGGTA 100 45
JJN11_RS21715 4502152 .. 4502164 -  -3.4  -4.08064   AAGCGCTGTCCAAAA                TTGC TCCCG GCAA                TTTTGTCTTCGTCTT  58 250
         asd 4500017 .. 4500034 - -11.3  -5.48825   TAGTACGCAAAAAAA             GGGGTGA TAAA TCACCCC              TTAGTATTAAGTATT 100 43
        glgB NONE
        glgX NONE
        glgC NONE
        glgA NONE
        glgP 4490294 .. 4490322 -  -6.6  -5.32882   TAGCATCATAAAAAA       TGCCCGGT-GGCG CTAA CGCTTACCGGGCC        TACAGGTTTCATGCG  91 134
        glpE 4488230 .. 4488246 -  -2.9  -4.54047   TTATTCCACACAAAA              GGGGACA GTA TATACCC              TAAATGCCCGCGTGC  65 25
        glpG NONE
JJN11_RS21660 4486077 .. 4486095 - -14.6  -2.64794   TTGAAGGCGAGACTA             TGGCGCAG CAG CTGCGCCA             GTTGATTCAGCTCAA  78 524
        malP NONE
        malQ 4478661 .. 4478676 - -11.8   -5.4505   CCGGGCAATAAAAAA              CCCGCC ATCC GGCGGG               TTTTTTTATCACTTC 100 34
        bioH 4474743 .. 4474771 -  -7.5  -3.31322   TCGAACGCGGGATAA        CCGCAACGATA TATTGAG TATTGTTGCGG        TACGTCACTTTTTCC  62 59
JJN11_RS21620 4474393 .. 4474412 -   -15    -4.183   TTAAGTGTGAATAAA            GCCGGGCA ACTC TGCCCGGC             TTTGTGCAATTATTT 100 35
        ompR NONE
        envZ 4466036 .. 4466055 - -12.2  -4.84359   GCATGCCCATAAAAA            CGGTAACC TGCG GGTTACCG             TTTTGCTGTTAACTC 100 20
        nudE 4458652 .. 4458664 -  -4.7  -4.18197   AGGGCGGAGCCAAAA                GCGCG CAG CCCGC                GTGGGATGCCTTTAT  64 289
JJN11_RS21545 NONE
JJN11_RS21540 NONE
JJN11_RS21535 NONE
JJN11_RS21530 NONE
        hofQ 4452654 .. 4452682 -  -5.9  -3.66178   TTCGTTAATGGTAAA        CCCGCTTCGCC GATACCT GGCGTAACAGG        ACATGAACTGAAACC  61 256
        aroK NONE
        aroB 4450912 .. 4450933 -  -3.6  -4.42238   TCACCTGAAGCAAAA           TGGCTACG TATTAC CGCAGCCG            GACCTTTCTAATAGT  63 40
        damX 4449538 .. 4449559 -  -6.6  -2.83409   GACTAACTGATTACA           CCTTCTCC GGCTGT GGAGAAAG            CTCCGACAGCATCCT  54 53
         dam NONE
         rpe NONE
         gph NONE
        trpS 4446168 .. 4446182 - -11.4   -5.8187   CAGGCAATAAAAAAA               CCGGGA AAT TCCCGG               TTTTTTTATATCCCG 100 80
JJN11_RS21460 4439037 .. 4439054 -  -4.7  -3.41051   CCACCGCCAGCATAA             CGCGGCG GCAG CGACGCA              CTAATCCTTATGCCC  52 33
        ppiA 4436992 .. 4437012 - -14.7  -3.29324   GGGAGGTAAAGGCAA            CGCGGGCAA AAC CTGCCCGCG            CCATTACGGATTAAG  93 36
JJN11_RS21445 NONE
JJN11_RS21440 NONE
        pabA 4435561 .. 4435571 -    -4  -4.87291   TATGGCAACTAAAAA                 TCAA CGA TTGA                 GGAAATTAGCCAGCA  74 15
JJN11_RS21430 4434179 .. 4434204 - -11.1  -2.85078   CACACCGTATTAAAC         GCCGGGT-GGCG CTG CGCTTACCCGGC         CTACGGTCTTGTAGG  74 74
JJN11_RS21415 4430425 .. 4430437 -  -4.8  -4.07568   CCCTTTGCCGCAAAA                GCGA TCCCG TCGC                TGGATGAGAGCTTTG  62 272
        kefG NONE
        kefB NONE
JJN11_RS21380 NONE
        slyD 4423063 .. 4423077 - -11.4  -5.50499   TGAGACGTAAAAAAA               GCGGGA ATA TCCCGC               TTTTTTGTGCCTTAA 100 51
        fkpA 4421745 .. 4421765 - -12.5  -5.80364   ACCCCAATAAAAAAA            CCGCCGCTT CTG AGGCGGCGG            TTTTAACCGGTTTAC 100 37
JJN11_RS21360 NONE
        tusD NONE
        tusC NONE
        tusB 4419773 .. 4419795 - -12.8   -4.7268   AAACACGTAATAAAA           CGCCCTCATA CAA TATGAGGACG           CGAAATTTTAGGGCT 100 80
        rpsL NONE
        rpsG 4418734 .. 4418759 - -15.5  -3.81027   GTTAAGTAACCCAAA         GCGGGCTGCTTC GCT GAAGC-GCCCGC         CTGGTGACTAATACT 100 50
        fusA 4416525 .. 4416547 - -19.2  -2.78935   ATATTCCTTACTATA           GTGCCCCCTC ACC GAGGGGGCAC           GGGACTTAGATTTTA 100 51
         tuf 4415283 .. 4415298 - -10.4  -5.79595   GCTGAAAACAAAAAA              GGACGC CGAA GCGTCC               TTTTTAATTCAGGGA 100 48
         bfd NONE
         bfr 4413913 .. 4413945 -  -2.7  -3.12327   GGGTTACATGGAATA      TGGGCGCAAACAT TCCATTG AGGTTTACGCCAA      TGCTTACTCTCCTCC  45 482
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ 4408550 .. 4408575 - -14.9    -5.252   TATGGGTAGAAAAAA         TAAACGGCTCA TCGC TGAGCCGTTTA          TTCGTATCGAGAAGG 100 49
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN NONE
        rpsH NONE
        rplF NONE
        rplR 4405534 .. 4405544 -  -3.2  -3.32963   ACCTCTACCTTAGAA                 CTGA AGG CCAG                 CTTCACGGGCAGCAT  48 9
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
        rpmJ 4402843 .. 4402872 - -12.3   -4.6645   TACAGACATACAAAA       GATTG-GCTGGCTA ATC TAGCCAGCTCAACC       CAACTTTGCAAGAAA 100 55
        rpsM NONE
        rpsK 4401989 .. 4402001 -  -9.1  -3.68023   AACCTGGAAAACGAA                CGCGT TAT ACGCG                ACGTTTTTTCGGCGG  74 17
        rpsD 4401335 .. 4401353 - -10.4  -3.14132   TCTCTTTGGTACTAA             GCTTTACT TGG AGTAAAGC             TCGACGATCAGGTGT  73 10
        rpoA NONE
        rplQ 4399865 .. 4399878 -  -9.5  -5.71712   GCGGATATAAAAAAA               CCCGC CGGA GCGGG                TTTTTTTACGTTACT 100 46
JJN11_RS21165 NONE
        zntR 4398743 .. 4398789 - -24.6  -3.54676   AGCCACTCAAAGCAA GAAGGCCAGTGGTAAGAAAGCG ATT CGCTTGCTTGCCACTGGCCTCC CAGTTACCCCGTTTT 100 233
        dprA NONE
         smg NONE
JJN11_RS21115 NONE
        tsaC NONE
        aroE NONE
JJN11_RS21100 4389950 .. 4389971 - -10.1  -3.39908   GTCCGGTAAAACAGA           TCCGCCCCC TGAC GGAAGCGGA            AATAGAAGGGTTAAA  69 86
JJN11_RS21090 4387459 .. 4387472 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGGCAGGTTCTT  39 46
JJN11_RS21085 4387298 .. 4387311 -  -5.3  -2.55351   CGTGGTGACACGAAG               CATAC TGAA GTATG                TGAGTGTCGCCGCAA  48 60
JJN11_RS21080 4387109 .. 4387142 -  -6.7  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGCGCACCT TCGC AGGTACACTCTGAAG      TTTTCAGGTTTTCGC  77 49
JJN11_RS21075 4384044 .. 4384058 -  -6.4  -2.64274   ATTTTCTCAAATCCA               CCGAAA CAG CTTCGG               CGTTGTAAGGTTAAG  53 32
         rrf NONE
JJN11_RS21065 NONE
         rrf 4383461 .. 4383494 - -16.9  -2.91924   TTATGGTGCAGAAAT     GCAAAAAGGCCATCC TTTC GGATGGCCTTTTCAC      TTAATTGATGTCTGG 100 35
        envR 4372650 .. 4372660 -  -3.2  -3.72324   CACGGCCATGAATAA                 TCCC GAT GAGA                 GCGTCCGGGTGCTGA  52 407
        csrD 4357906 .. 4357922 -  -5.8  -2.87132   TTTGCTCGTCATACA              TCACGC TACAG GCGCGA              TATTCTACGTGAAAA  52 57
        mreB 4356595 .. 4356621 - -15.3  -2.87132   CTCTCGCGTCAGAGA         GAAAGGGTAGC CATCC GCTACCCTTTC         ACACCTGACTACTCT  95 34
        mreC NONE
        mreD NONE
JJN11_RS20925 NONE
         rng NONE
        yhdP NONE
        tldD 4347595 .. 4347614 - -13.6  -3.30554   GGAAGGAAGGAGTAA            CCCTCTCC CGCG GGAGAGGG             TCAGGATGAAAAGAT  91 40
        aaeX NONE
        aaeA NONE
        aaeB 4343346 .. 4343364 - -11.7  -5.65177   ATAGTCACAAAAAAA             CCGACGC TTATG GCGTCGG             TTTTCGGAAGGATTA 100 38
JJN11_RS20885 NONE
JJN11_RS20880 4340997 .. 4341026 -  -7.9  -5.45652   ATGCTGAACAAAAAA       GCG-CAGGAACAGG GTG CCTCTTCCTATCGC       GTTATCGAAGCGCGT 100 520
         mdh 4338579 .. 4338596 -  -8.4  -5.64274   GCAGGCATAAAAAAA             CCGGAG TTCATG CTCCGG              TTTTTTATTGCCCTG 100 57
        zapE 4333989 .. 4333999 -  -2.6  -3.01726   CCGGCGCAGAGAAAG                 TTTT GGG AAAA                 AAACCTTCTTGTAAC  43 178
        rplM NONE
        rpsI 4332977 .. 4332990 -  -9.5  -5.71983   TGAACCATAAAAAAA               CCCGC CGAA GCGGG                TTTTTCGCAAATTGT 100 63
        sspA NONE
        sspB 4331560 .. 4331574 - -12.8  -5.74122   TATCAGACAAAAAAA               GGGCCC ATG GGGCCC               TTTTTTTATTTCACT 100 31
JJN11_RS20815 4330346 .. 4330356 -  -3.2  -3.83998   TTATTTGACAGGAAA                 CAGG TGT CCTA                 TATTTAAATGCAGTG  55 86
JJN11_RS20810 NONE
JJN11_RS20805 NONE
JJN11_RS20800 NONE
JJN11_RS20795 4325574 .. 4325584 -  -6.8  -3.19192   GGGTATTGAAGTGAA                 TGCC AAC GGCA                 GAGTGAGCGGCGTGA  56 408
JJN11_RS20780 4318207 .. 4318223 -  -3.6  -4.59109   GAGATGCTGCAAAAA              GGGGTG CAGGC CACCAC              AGAGCAGCAGCAGGC  70 219
        lptF NONE
        lptG 4306032 .. 4306050 -  -6.6  -2.79004   TGAGGGGTAAAACAG             GGGATGCG CCT CACTTCCC             GGGCAGGGAAGCGAG  54 52
        arcB 4303468 .. 4303496 -  -3.2  -3.68569   TGATTCATGTAACAA        CGTATTTAAGAT TTGCT ATCTTAACTGCG        TGCGGCCTAAAGTTT  53 137
        elbB NONE
        mtgA 4301768 .. 4301786 -  -6.7  -3.79909   TGAAATCACCAATAA            GCTGGGCA TGCA TGCCC-GC             CCGGCGATGAAGTTA  64 241
        mlaF NONE
        mlaE NONE
        mlaD NONE
        mlaC NONE
        mlaB 4290708 .. 4290732 -  -8.5  -5.04356   TTAAATAAGCAAAAA          GCCCCGACGAT GAA ACTGTCAGGGC          TTTTGATAGTAACGT  93 51
        ibaG NONE
        murA 4288990 .. 4289009 -   -10  -5.54403   AAAAAACAAGAAAAA            GAGCGCCA GGAA TGACGCTC             ATCTAAACGGGACTA 100 81
        rplU NONE
        rpmA 4286621 .. 4286642 - -15.9  -4.74103   TTTCCAATGTAAAAA           GCCCCGCAA CACG TTGCGGGGC            TTTAATCCGTTACCG 100 54
        cgtA 4284401 .. 4284419 - -14.6  -4.89009   ACACTGAATTAAAAA             GCCCCCTT GAT AAGGGGGC             TCTTGACGGTCTTAA 100 37
        greA 4280475 .. 4280489 - -12.8   -4.4009   CTTGAGTTGATAAAA               GGCCGC TAT GCGGCC               TTTTTCCTATCTTTA 100 72
        rlmE 4279269 .. 4279283 -  -2.8  -3.40899   AACCTCTTATTACAA               CTGTGT TAA AAACAG               CGTCAGGATACTCTG  47 83
        ftsH 4277249 .. 4277268 - -12.8  -5.25699   AGCAGACAAGAAAAA            CCCCGGGG CAAG CCCCAGGG             TTTCAGGTTAAGAGA 100 61
        folP NONE
        glmM 4274995 .. 4275010 - -11.8  -4.77775   ACTGTACAAAACAAA              GGCGGC ATAA GCCGCC               TTTTTAAACACTTAC 100 47
        secG NONE
JJN11_RS20545 4274347 .. 4274362 -    -9  -5.92337   ACAGACGAAAAAAAA              GACGTC TTTC GACGTC               TTTCTTTCGGAATAT 100 41
JJN11_RS20535 4272362 .. 4272377 - -10.4  -5.60689   TCAGATAACAAAAAA              CCCCGA TAAA TCGGGG               CTTTAGATAACTGAA 100 152
        rimP 4271851 .. 4271869 -    -3  -3.07487   CCAGACTGTTAAAAG             TGGGGAAC CAG GTTCGCCT             TCTGGATATTACTCA  43 0
        nusA NONE
        infB 4267537 .. 4267550 -  -9.5  -5.36441   TCTCCAGACAAAAAA               GGGGC CAAA GCCCC                TTTTGAAATTTAATG 100 91
        rbfA NONE
        truB NONE
        rpsO 4265710 .. 4265725 - -11.8  -5.00616   GTCTGGTTGAAAAAA              GGGGCC ATAA GGCCCC               CTTTTCTGAAACTCG 100 47
         pnp 4263338 .. 4263359 - -15.1  -3.78934   CCTGCCTGATAACAA           GCCCCCCGC TTGC ACGGGGGGC            AAACGGCAACCTTAC 100 37
        nlpI 4262315 .. 4262340 -  -6.8  -3.99775   ATTGACGAACAACAA         CGCCCTCACC AGTAAA GGTGATGGCA          ATCAAAAGATTACGG  68 61
JJN11_RS20490 4260242 .. 4260263 - -14.5   -5.9003   AAAGGAATAAAAAAA           GCCCCGATA AAAA TATCGGGGC            TGTATATTTTACTTT 100 60
         mtr 4258515 .. 4258525 -  -8.2  -3.25823   TGCCGCTGACAGCAA                 CCGC GAT GCGG                 AATTCCTGTTTACCT  59 410
JJN11_RS20465 NONE
JJN11_RS20460 4254534 .. 4254567 -   -11   -3.4582   GTACCGCATTAAACA     GCTCACGAAGCGCC AGAAAG AGCGCCTCGTCAGC      GGAGACGGGACGTTT  73 75
JJN11_RS20450 4253741 .. 4253751 -  -2.4  -4.62783   CATCGATCTGAAAAA                 CGCC GGG GCCG                 ATTTTCACGATCAGG  66 121
JJN11_RS20440 4252062 .. 4252106 - -12.7  -3.79747   GCAGTGAGTACCAAA GCCGCGACCGACCCGCGAACC GTG GGCACGCAGGTGGATGACGGC ACCCTTGAACTGCGC  87 491
        rsmI NONE
JJN11_RS20410 4246482 .. 4246505 -  -2.4  -3.72893   CAGCGCCCGACTAAA          CGTGGC CTGATCTACGCC GCCACG           CCAGCCAGTGATTTC  51 480
JJN11_RS20400 NONE
        garL NONE
        garR 4241771 .. 4241797 - -10.1  -4.74103   CGCTTAAGGCAAAAA        TAG-CGGGCGCG TTCC CGCGCCCGTCTT         TGTTAGCGAGAAACT 100 28
        garK NONE
        rnpB 4240158 .. 4240173 - -11.8  -4.99435   GCCAAGAAGCAAAAA              CCCCGC CGAA GCGGGG               TTTTCTGAAGAGTTG 100 36
JJN11_RS20375 4239255 .. 4239271 - -10.8   -5.5604   TCAAGGAATAAAAAA              CCCGCG ACACG CGCGGG              TTGTTGAGCACTGGT 100 55
JJN11_RS20370 NONE
JJN11_RS20365 4235949 .. 4235962 -  -5.9  -3.86252   CCTCAGCAAAGATAA               GACGC TGAC GCGCC                TGCAGCTGTGGTTAG  61 423
        yhaJ 4234579 .. 4234616 -  -7.5  -2.71101   TTGCTAAACAACTGA   TAGTTTGCCCGGC-GGCG CTG CGCCTGCCGGGCCTGCAA   TTTACTTCTGGGTGA  56 27
        uxaC NONE
JJN11_RS20290 4223750 .. 4223777 -  -9.9   -5.5604   GTAATTAATAAAAAA       GCCCGGT--GGCG GCTA CGCCTTACCGGGC        CTGATTTTGGTTCGT 100 77
        rlmG 4217759 .. 4217775 -  -3.6  -3.17392   GATGCTGCAACGCAA              GGCCAG CAAAC CTGGCG              AAGGGCTGGGGAAAA  47 419
        lsrA NONE
        lsrC NONE
JJN11_RS20235 NONE
        lsrB NONE
        lsrF NONE
        lsrG 4207209 .. 4207236 -    -9  -4.56775   AGCTGGTCTGAAAAA        CGCCGGGC-GGCG CTA CGCTTGCCCGGCC        TACAAAACCCGCACC  90 185
JJN11_RS20210 4205805 .. 4205846 -  -5.9  -4.67234   ACTGAAGCGTAAAAA CCGCCGGGCCTACAA CGGCTTTGGTTT TTGTAGGCCCGGTAA  GCGCAGCGCCACCGG  78 49
JJN11_RS20200 4202434 .. 4202459 - -14.1  -5.60993   TTCGCCATAAAAAAA         CCGCTTACGCT GTGA AGCGTAAACGG          CTTTTATAGAACATT 100 47
JJN11_RS20195 4200457 .. 4200473 -  -6.5  -4.57569   TGAGCTGCGCAAAAA              CCCGC AGATGAA GCGGG              CGCTGGATAACTTTA  78 147
JJN11_RS20185 4198917 .. 4198942 -  -8.9  -4.59773   GCGGAGCTGGAAAAA         GAGGAGTCCTG GCTG CTGGTCTCCTC          GCTGAGCAATATGGA  86 135
JJN11_RS20175 NONE
JJN11_RS20170 NONE
JJN11_RS20165 NONE
JJN11_RS20160 NONE
JJN11_RS20155 NONE
JJN11_RS20150 4195285 .. 4195304 -  -7.1  -3.96999   TGACAGGTAAAAAGA            TCCCGGC GCTGAG GCCGGAA             ATTTCGTTATTTCAG  71 32
JJN11_RS20140 4194675 .. 4194691 -  -2.3  -3.17392   CAGGTGGCAATTTAA              TTACC TTATGTT GGTAA              CATTTTCAGATTATT  43 91
JJN11_RS20135 NONE
JJN11_RS20130 NONE
JJN11_RS20125 4192747 .. 4192766 - -10.7  -4.14627   GTTGCAGATAAATAA            TCCCGGC GCAGGG GCCGGGA             CTGAAGGAGATTACA  87 36
        bcsO NONE
        bcsQ NONE
        bcsA 4188811 .. 4188821 -  -2.4  -2.87344   CATCCCTTTCATACA                 GCGG TAT CCTC                 GGTGGCGTTATTCCT  40 8
        bcsB NONE
JJN11_RS20100 NONE
JJN11_RS20095 NONE
JJN11_RS20090 4180935 .. 4180964 -  -8.6  -5.58522   CACACAAAACAAAAA       GCACCACCGCAAG TCATT CTTGCGA-GGCGC       TTTCCAGAATCTCAC 100 57
JJN11_RS20085 4180146 .. 4180163 - -11.3  -3.66349   AAATCAAAGAATTAA             GCCACTC CAGT GAGTGGC              TTTTTTTTACGCTAA  81 68
         mug 4179368 .. 4179383 - -10.4  -5.08824   TCCTGATGTAAAAAA              GCTCCC TACG GGGAGC               TTTTTTTATGGCTGA 100 52
        tsaD 4173681 .. 4173697 -  -8.7  -4.28188   TAGCCACAATATAAA              CGCGAAA ACC CTTCGCG              ACGCGCTCACCTGCT  81 336
JJN11_RS20045 4170821 .. 4170839 -   -16  -5.43866   GAAGGTCTAAAAAAA             GCCTGGCG TGA CGCCAGGC             TTGCCGATCATTTAC 100 33
        folB 4163445 .. 4163465 -  -7.5  -5.53079   AAAAGACAGAAAAAA            GGGCTACCC AGG GGGTAACCG            TAAAAGGAACAGCTC 100 81
        bacA 4162567 .. 4162594 -  -7.6  -2.80699   CTGGAAGGAACAGCA        TTGCCCTCAGCC GAAA GACTGAGGGCGG         GCAATCAGAAGAAGA  59 30
JJN11_RS19975 NONE
        glnE NONE
        hldE 4154757 .. 4154772 - -11.8  -5.41143   CACCCGGCAAAAAAA              CGGGCC TTTC GGCCCG               TTTTTTATTTCTCGC 100 30
        ribB 4153339 .. 4153356 - -14.1  -5.79526   ATAGGGTAAAAAAAA             CGCCGGG TTAA CCCGGCG              TTTTTTATGCTGCGT 100 43
        ygiD 4151282 .. 4151292 -  -6.8  -4.21462   ATCGATTATCGAAAA                 CGGT AAC ACCG                 TGGAAGCGGTAGAAG  71 307
        nudF NONE
JJN11_RS19920 NONE
        cpdA 4145950 .. 4145964 -  -2.8  -2.90956   AAAGGAGCGCAGACA               TCAGTA GCC TTCTGA               AGCGGTATCCGGGCG  42 11
        yqiA NONE
        parE 4143352 .. 4143370 -  -3.1  -3.86194   AACGCGGCGGATAAA             GGCCT TATGAAAAG AGGCC             TCGCTGGTCAGCGAT  54 103
JJN11_RS19880 NONE
JJN11_RS19875 4134632 .. 4134650 -  -2.3  -4.57073   CAGCGCGTTTAAAAA             GGGGATC GGAGA GACGCCC             TTACAGTACCGGAAG  66 130
JJN11_RS19865 NONE
JJN11_RS19860 NONE
JJN11_RS19855 4128871 .. 4128904 - -10.9   -4.2349   CGTTGATATGGAAAA     GCGGCCCACTCCCCG TCGC CGGGGAGTGGAAAAC      TGACGGGCCATCGCT  88 498
JJN11_RS19820 4124564 .. 4124583 - -12.1  -5.38958   AGTCACAAAGAAAAA            GGGGCCG GAATAG CGGCCCC             TTGATGGGTTATTTA 100 34
        parC 4122105 .. 4122142 -  -2.7  -4.62783   TAGCGACCTCAAAAA   CCCCTGACAGTTGGCGAT TAT ACTGC-AACTGTGAGCGG   GTAACTCCTTTGTTT  65 96
        plsC NONE
        ftsP 4119849 .. 4119875 - -15.1  -4.06419   CGGGCCTAGAAACAA         CACGCCCGGCA GAGGA TGCCGGGCGGG         AGAGAATTACGGGGC 100 32
JJN11_RS19785 NONE
JJN11_RS19780 NONE
JJN11_RS19775 NONE
JJN11_RS19770 4109629 .. 4109646 -    -4  -2.90212   CCAGCACCCGACAGA             GCAGGC GAACAG GCCAGC              AATAGGTGTTGTCAC  45 425
JJN11_RS19750 NONE
JJN11_RS19745 4104996 .. 4105008 -  -3.3  -3.83026   TCGGGCGATATGAAA                GGGGA TCT TCCCG                GTCACTATTGTGTGC  55 58
JJN11_RS19740 4104042 .. 4104071 - -11.5  -2.79183   TTGACCGCTATTATA       CGTCGCCATATAC AAAA GCATACAGCGACG        CGTGCGGTTGTCTAT  76 37
JJN11_RS19735 4102918 .. 4102929 -  -5.8  -3.60151   TGTCCGAAATTATAA                CCTG ACAT CAGG                 TCAGTTCCTTTGAGC  59 267
JJN11_RS19730 4101781 .. 4101795 -  -3.5  -4.14392   TGGGAACCGTTAAAA               TGACG ACCTG CGCCA               GTCCTGCGTATCTTG  60 447
JJN11_RS19715 4099125 .. 4099136 -  -2.2   -3.1247   AGTCTGGATATGGAA                GC-GC CTG GCAGC                TGAAAGTATGAATAA  43 129
JJN11_RS19670 4088683 .. 4088696 -  -9.5  -5.46698   TTGAAAAGTAAAAAA               GGGGC CGCA GCCCC                TGATAATAATTATCA 100 70
JJN11_RS19655 4083117 .. 4083148 -    -8   -5.8187   CAGGCAATAAAAAAA      CTCCCAAAGACCAC CGCT GTGGTCTTCAGGTA       TAGGATTTAAAGAAC 100 45
JJN11_RS19650 4082559 .. 4082570 -    -3  -4.07568   TTTTTGCGTTTAAAA                TCAA TGAA TTGA                 AAGATTTCATTTTTC  56 89
JJN11_RS19630 4078126 .. 4078148 - -11.2  -2.93549   GATCCGTAAGAAGTA           CTGCAACGCC TGA GGCGCTGCTG           TCGTTGTAGCCCCGG  74 104
        exbB NONE
        exbD 4074708 .. 4074727 - -13.6  -5.19879   CGGCAAATACAAAAA            CGGCAACC CGTG GGTTGCCG             TTTCTCTTTATTTCG 100 33
JJN11_RS19590 4072113 .. 4072125 -  -4.9  -3.57561   TCGCAATGGCCCAAA                TTGTT TGC AACAA                CTAAACAACAGATCC  55 42
JJN11_RS19585 4071139 .. 4071151 -  -3.4  -4.13767   CTGTTGACCGGAAAA                TACC TGAAC GGTA                TTCCTGACGGCTCCC  60 446
JJN11_RS19575 4069103 .. 4069128 -  -2.5  -3.58726   TTCTCCGACAGAGAA         GTGACCTTTGCT GAC AGCCA-GGTCTC         CTCCTGGAACGGCGG  47 366
JJN11_RS19565 4064756 .. 4064781 - -11.3  -4.28774   CCAGCGAAGTGAAAA         TTG-GTCACCTG TCG CAGGTGACGCAA         TTGATCAGCGACGCG  90 55
JJN11_RS19535 NONE
JJN11_RS19530 4056613 .. 4056629 -  -7.2  -3.68886   ATGAATGGACGCAAA              GCCGCC TGCCG GACGGC              TCGATTCACACGCCC  67 31
JJN11_RS19520 4053538 .. 4053562 -  -7.1  -2.62263   AGGTGGCGTATATTA          CGCTTTCCTCT TTC AGAGTCAAGCG          ATTATTTTCGCTTTT  56 263
JJN11_RS19515 4051720 .. 4051736 -  -6.5  -2.55847   AACCGCTAGACGAAG              GGGACAC GAG GTGTCAC              GACTTCGCAGCCGTC  52 101
JJN11_RS19510 4051579 .. 4051614 -  -4.8  -4.00532   TTTTTAAAGAGCAAA    TATCGCAAACATGACT CTGA AGTCAGTTTTGAGATA     CTGATTGGTTGTGCC  62 61
JJN11_RS19505 4048515 .. 4048529 -  -6.4  -2.64651   AATCTCTCAAATCCA               CCGAAA CAG CTTCGG               CGTTGTAAGGTTAAG  53 32
         rrf 4048188 .. 4048207 - -13.6  -4.74103   CGCCCAACGCAAAAA            GCCCATCC GTGA GGATGGGC             TTTCGGCTTTAATTG 100 43
JJN11_RS19485 4044180 .. 4044201 - -15.9  -3.58037   CATTAATCTGTGAAA           TCCCCCTCC CTGC GGAGGGGGA            TTTTTTTTACTTCAG 100 32
        trmB NONE
JJN11_RS19455 4038923 .. 4038944 - -11.5  -4.52589   CTCCCTCATACAAAA           TGGGCCAGC AATT GCTGGCCCC            TGATGCTCTATTAGT 100 36
JJN11_RS19450 4037702 .. 4037714 -  -6.2  -4.11216   TGCGCACGGCTAAAA                CGCG CCATC CGCG                TGGCTATATGGAAGG  69 494
JJN11_RS19420 4033648 .. 4033672 -  -4.2  -2.99972   ACTGCAGGAAACAAG          GCCATGAGAG GCATT CTCTGCTGGC          ACAGGCTCATGACAA  47 32
JJN11_RS19415 4032486 .. 4032533 -  -5.5  -3.13504   TCGGCACTAAAAGTA TCGGCGTGGCGATC-G-GCCAGCG CAT CACCGGCACCGCCCGCC-CGCTGA CGGCGCTGAAAGCGC  49 384
        yqgB 4024992 .. 4025007 -    -4  -3.41761   AGGCGAAAACGAAGA              CATGTC GTCA GACATA               GCGAACCTCAACTCT  50 33
        speA 4022997 .. 4023022 - -21.9  -4.25104   GCTGGGGCAGGAAAA         GCCCGGCGACG CAAA CGTCGCCGGGC          ACCGTCATTACTCGT 100 33
JJN11_RS19355 NONE
JJN11_RS19350 NONE
JJN11_RS19345 4017627 .. 4017658 - -13.7  -5.60993   GTCGCTATAAAAAAA      CCCTCCCGCGTCG TTAGCC CGACGAGGAAGGG       TTAGATTGGAAAAAG 100 112
        speB 4016626 .. 4016661 - -10.5  -3.14132   TGCTGGCCGGAGGAA    TG-TTGCTGCTGCGCA TGCGT CGCGCAGCAGCACTCA    GCGCGTAAGGCTTAC  73 37
JJN11_RS19330 NONE
JJN11_RS19325 NONE
JJN11_RS19320 4013373 .. 4013387 -  -4.9  -3.01712   GTTTTCCGCTCAACA               GCCCG TTCAT CAGGC               GGCTCCCTGCTGCGC  49 20
JJN11_RS19315 NONE
JJN11_RS19310 4011794 .. 4011817 -  -3.7  -2.78032   TTGGGCGTAAAACAT          GCCCGACGC AGTGAA GCGCCTGAC           GTTAACTCACTGATT  43 40
JJN11_RS19305 NONE
JJN11_RS19300 NONE
JJN11_RS19295 NONE
JJN11_RS19290 NONE
JJN11_RS19285 NONE
JJN11_RS19280 4006268 .. 4006285 -  -8.3  -2.87211   ATGCGTCCTTACAGA             TGGCGGC AGAA GCCGCCG              GAAACGTCCAGCGCG  62 1
JJN11_RS19275 NONE
JJN11_RS19270 NONE
JJN11_RS19265 4002311 .. 4002346 - -12.6  -3.53012   TGCTTTGTGCGTAAA    CGTAGGCCCGGTAAGCG CAG CGCT-ACCGGGCACACA    GCTAGTACAGCGTTT  89 27
         tkt 3999126 .. 3999152 -  -7.9  -5.30686   AACATGCACAAAAAA        GCCGGG-TGACG CTTA CGCCTGCCCGGC         CTGAATATTTGTAGG  93 76
         epd 3997813 .. 3997830 -  -4.1  -3.57144   TCGTTGATTCTTAAA             GTTTTGC AGAC GCAATAC              GCGTCTTACCTGAAA  52 31
         pgk 3996594 .. 3996615 - -10.1   -4.0896   AAAGCGCGCTGAAAA           TTGGGCAGG TTTC CCTGCCCTA            AAATGGCTTACTTCT  85 33
        fbaA 3995407 .. 3995425 - -13.1  -5.53079   AAAAGACATAAAAAA             GCCCGCG ATTAA CGCGGGC             TTTTGATGCTTGCTG 100 54
        mscS 3994365 .. 3994399 - -13.6  -3.19936   AATTAGTGAAGCTAA     TGTAACCCGGTACGCA TTG CGCGCACCAGGTTACG     ATGAAACGTTATTCC  88 34
        argO 3993564 .. 3993583 -  -4.8  -3.02511   TCCATGTTGCGAAGA            GTGCCCAG GTAA CAGGGCGC             ATGCCAGCAAGCTTA  49 74
JJN11_RS19225 3992701 .. 3992727 - -10.1  -5.52023   AGGACTAATAAAAAA        GCCGGGT-CGCG TTAA CGCTCACCCGGC         TTTTTATTGCTGCTA 100 52
        rpiA 3990963 .. 3990987 - -12.1  -3.23855   TTTTGCAAAAATAAT          TAGCGGGGGGA CGC TCCCCCCGTCA          GATCATTTCACGATG  82 28
        serA 3989405 .. 3989432 -  -9.9  -5.02074   GCAGTGGTGAAAAAA       GCCGGGT--GGCG GCGT CGCCTTACCCGGC        CTACACAATCCGTAG 100 83
JJN11_RS19190 NONE
        pepP NONE
        ubiH NONE
        ubiI 3983542 .. 3983557 -  -5.4   -4.9218   TATTCACTATAAAAA              TGCGAA TCGT TCCGCA               CAAAAGCAAAGTCGA  78 220
        gcvT 3982233 .. 3982251 -  -8.1  -2.51519   GATAAAAATAATTAG            GCGACCGG TTTA CCGG-CGC             GAACAAAAATCGGTT  57 3
        gcvH 3981737 .. 3981770 -  -5.1  -3.07816   CGGCGACGCAGCGAA     TCCCCGGGAGCTTAC TCAG GTAAGTGACCGGGGT      GAGCGAGGAAGCCAA  51 71
        gcvP 3978722 .. 3978748 - -10.1  -5.93809   TCCGGATAAAAAAAA        GCCGGGT-GGCG CTGA CGCTTACCCGGC         CTACAGTATGACAGA 100 45
JJN11_RS19155 3977562 .. 3977572 -  -2.4  -4.09685   GTTTATCGTGGAAAA                 CGGC TTT GGCG                 CGTACGACAAAGTAG  56 408
        yqfB 3975225 .. 3975238 -  -2.5  -3.57627   TGTTCACATAAAAAC               TTAAA GGCA TTTAA                ATTCAATAACATAAA  47 12
JJN11_RS19135 3973888 .. 3973903 -    -9  -3.96483   AGCGCAGTTAAATAA              CAGCCA GCAG TGGCTG               TCGCTGGACATTGAA  75 522
        sdhE NONE
JJN11_RS19120 3971957 .. 3971977 - -11.9  -2.86011   CAATCTCAAAGATGA            TGCCCCATC GAT GATGGAGCA            GTACGACGTGCTGAT  70 418
        xerD 3970843 .. 3970865 -  -2.7  -3.28712   TGGTTCCTGTTACAA          GTCATCACGC ACGT GGGTGATG-C           TGTTGGTGTAGCTGC  47 7
        dsbC NONE
        recJ NONE
        prfB NONE
        lysS 3965616 .. 3965640 - -15.7   -5.8187   CAGGCAATAAAAAAA          GCCCCGACGCA ATA TACGCCGGGGC          TTTTTCGCAACAGGG 100 42
        actS 3964605 .. 3964628 -  -3.8  -3.09516   CGTTCTACCATTGAA          CTACGC-CCGC TTT GAGGTGCGTAA          GGCATTATAGACCTT  47 92
JJN11_RS19080 3964398 .. 3964415 -  -3.4  -2.55216   TAGCAGCCAGAATAG             CTCTGCG ATTTG CGCAG-G             TTGGCCTCTACTTCT  42 150
JJN11_RS19075 NONE
        ompA 3962533 .. 3962552 - -10.7  -5.60993   TCTTCGATAAAAAAA            CCCGGCA GGTTAA TGCCGGG             TTTAAAGCGTTCCAG 100 45
JJN11_RS19060 NONE
JJN11_RS19055 3961423 .. 3961453 -  -9.7  -5.02074   TTATCGCTTAAAAAA       GAGAACCTGCAGC GCGCT GCTGCAGGTTCAG       AATCAGGCGCGGATA 100 28
JJN11_RS19040 NONE
JJN11_RS19035 3957946 .. 3957959 -  -2.4  -5.41746   AATTGTTTAAAAAAA               GTGA GTTTTA TCAC                AAAGGATTCTGGAGG  79 108
JJN11_RS19030 3956638 .. 3956669 - -20.4  -3.93236   GATGAAGCTCACAAA      CAAATAAGCCTCCG GGAT CGGAGGCTTATTTG       GATTGATATATATCA 100 48
JJN11_RS19025 3955636 .. 3955653 - -12.7  -5.51402   ACAGACGCAAAAAAA             CCGGCTC CTGA GAGCCGG              TTTATCCCGGAGGTA 100 51
        kduI NONE
        kduD 3952195 .. 3952214 - -11.4  -5.78622   CCAGGTCAAAAAAAA            CCTCCGCC CTGG GGCAGAGG             TTTTTTGACCTGAGC 100 46
JJN11_RS19005 3950431 .. 3950443 -  -6.2  -5.00616   CCCGGGTGTAAAAAA                GCCG GGTGG CGGC                TACGCCTTATCCGGC  81 87
JJN11_RS18970 3942922 .. 3942935 -  -3.7  -3.04398   CCCTTGGTGCAAAAG               CGGTG CTGA CGCCG                GGTGATTTCCAGGGC  45 393
        lysA 3940918 .. 3940954 -  -5.1  -4.56597   CCGGCTGGTCAAAAA   CGAGCCGATCGAAGCG ATCCCG CCCTTC-ACCGGCACG    CTGGTGTTACGCGAT  72 67
JJN11_RS18950 NONE
JJN11_RS18945 3936870 .. 3936884 -  -5.6   -3.1355   TGTACTGAGAGTTAA               TGCGCG GGC CGGGCA               GCTTCCCGGCCAGTT  52 77
JJN11_RS18940 NONE
JJN11_RS18935 3935398 .. 3935413 -  -6.1  -3.50853   GGTGCTGAACGATAA              CGGCA TTGACG TGCCG               GGAGATATTTCGCTG  58 211
         aas NONE
        lplT 3930508 .. 3930523 -    -9  -4.86939   TAATAAACGCAAAAA              GGCAAC GACA GTTGCC               TTTTTAGTTTCACAG 100 157
        rppH NONE
        ptsP 3924690 .. 3924714 -  -9.2  -3.49951   GACAGCGGTAGAGAA          GCGCGCAGAG GAGTA CCCTGCGCTC          CAAAGTTGCGAATCA  71 135
         lgt NONE
        thyA 3922927 .. 3922945 -   -16  -5.65177   ACAGGCATAAAAAAA             CCGGCGCA GAG TGCGCCGG             TTGTGTCAGGATTGC 100 45
JJN11_RS18880 NONE
JJN11_RS18875 NONE
JJN11_RS18870 NONE
JJN11_RS18865 NONE
        recC 3917619 .. 3917643 -  -2.2  -2.64747   TCAGTCCATGACAAG         TTGCGCA-TCA TAAA TGAATGCCCAA          ATCCGTGCAATTTTT  39 50
        ptrA NONE
        recB NONE
        recD 3908842 .. 3908865 -  -9.6  -2.52896   GCATTCTGGAACTCA          TCCGCCCGCTG GAG CAGCAGG-GGA          TCCTGGTGCGCCGCT  59 445
        amiC 3906339 .. 3906352 -  -8.1  -4.67697   TCTTAAAACAATAAA               CACCC TTCC GGGTG                TTTTTTTGTTTTTGT  85 95
        mltA 3904665 .. 3904686 - -12.3  -4.70659   CCTCAGATGTAAAAA           GGGTGAGAG TTAC CCCTCACCC            CGGAAAACATAGCGT 100 55
        tcdA 3903712 .. 3903747 -  -6.1  -4.14739   CCATTGAGGGGAAAA    GCGCCGCGCAGATCCT GGAGG AGAACCCGCT-GGCGC    TGTTCGATGCGCTGG  69 117
JJN11_RS18795 3901742 .. 3901761 - -10.7  -2.57423   ATAGTGATTAATGTA            GCACCGC CCAATT GCGGTGC             TTTTTTTTGTCTGCT  72 47
        gcvA 3900492 .. 3900508 - -10.1  -2.52464   TCTGTCCTGAAGTTA              TGCGCGC CCT GCACGCA              AAAGAAAGTATTACT  69 36
JJN11_RS18785 NONE
        rlmM 3898475 .. 3898490 -  -6.1  -2.71712   CTCTGGCGGTCAAAG              TGGCC AGCGCA GGCCA               TCAGGCTATCATTGT  49 520
         syd 3891757 .. 3891791 -  -8.6  -3.82604   GCATTCAACTAATAA     GGGCGATCTCTCACAA ACT CTGTAAGAGATCTCTC     ACACGCGCAGTAGTA  73 48
JJN11_RS18745 NONE
        truC NONE
JJN11_RS18735 3889579 .. 3889610 - -10.1  -3.38314   GTCAACTGGCAAAGA      GTTCTGGCCCTCC GCTCAG GGAGGGCAGGAAC       TTATTTTAGCAATGT  75 26
        gudP NONE
JJN11_RS18725 NONE
        gudD 3885048 .. 3885071 -   -11  -3.69482   TCACGCAAGAGATAA          TGCCGACTCC CGCA GGAACCGGCA           CCGGACTTAACGCAC  81 32
JJN11_RS18715 3883608 .. 3883621 -  -3.7  -4.37092   ACTGGTGGGAGAAAA               CCCGG AAGA CCTGG                TCGGGGCGATCCATA  65 255
        rlmD NONE
        relA 3877347 .. 3877377 -  -5.4  -5.60993   GTCCTGATAAAAAAA      TGCCGGGT--GGCG GCTTG CGCCTTACCCGGCC      TACAAAAGAAGGTGC 100 43
        mazG 3876511 .. 3876526 -  -4.7  -4.24562   AAAAAATCACACAAA              TTGCG CTTGAT CGCAA               AAACCCGTTAGAGAT  64 33
        pyrG 3874632 .. 3874656 - -18.7  -4.08164   AAAACTCCAGACAAA          CAACGCGTACC TCT GGTACGCGTTG          CCGTTCTAACTTTTC 100 41
         eno 3873251 .. 3873264 -  -9.5   -6.2845   AATGATAAAAAAAAA               CCCGC CGAA GCGGG                TTTTTCTAAAGATGA 100 55
        queE 3870667 .. 3870677 -  -3.2  -4.36914   TCGCGTTGGAGAAAA                 GCTG CTT CAAC                 GCTATGGCGCCCGCC  64 447
JJN11_RS18660 3865957 .. 3865969 -  -4.7  -3.32233   TAATGATCAAAGAGA                CCTGC ACC GCGGG                CTGCGTCTACCGCGG  52 48
        cysJ NONE
        cysI 3861761 .. 3861799 -  -8.1  -4.36914   GCCCGGCCTACAAAA  CCCGTAGGCCCGGTAAGCG AAG CGC-CACCGGGCAAA-GGG  TGGGTTACTCCCAGA  78 30
        cysH 3860656 .. 3860669 -  -3.7  -3.86015   GAGGTGTTCGATAAA               GCCGG GATC CCGGT                GCTCTACGTTGAAGC  57 326
        cysG 3858114 .. 3858129 -  -6.1  -2.57211   ACTGTTCCTTATAAG              GCCTG GTGCAA CAGGC               GTTATTGTTGCAGCC  50 149
        cysD NONE
        cysN NONE
        cysC 3855113 .. 3855139 - -10.3  -2.88544   TGTGACCGTGACATA         TTGATGGAGAT TAAGC ATCCCCATCAA         TACCATCTCAGGATC  71 33
JJN11_RS18610 3854667 .. 3854685 -  -5.3  -2.98823   TCGGGGCTACAGAGA            TG-CCGCA ACAT TGCGGGCA             AATGTACCACATTTT  51 105
        ftsB NONE
        ispD NONE
        ispF NONE
        truD NONE
        surE NONE
JJN11_RS18580 3850510 .. 3850522 -  -6.2   -2.6415   GAAACCAGTGACAAT                GCCG CAACT CGGC                TGATGGTGAATTTTG  51 172
        nlpD 3849372 .. 3849384 -  -3.3  -3.92075   ATTCTGACTCATAAA                GGTGG CTC CTACC                CGTGATCCCTGGGCG  55 70
        rpoS 3848337 .. 3848356 - -13.6  -5.54338   TAAGCAAAAGAAAAA            GGCCAGTC GAAA GACTGGCC             TTTTTTGACGAAAAG 100 45
JJN11_RS18550 NONE
JJN11_RS18545 NONE
JJN11_RS18540 3844685 .. 3844703 -  -5.9  -4.25104   GCGCGGCGAGCAAAA             GCTACGG TCTGG CCGTGGC             GGCGCTGGCGGGCGT  66 414
JJN11_RS18525 NONE
JJN11_RS18490 3832944 .. 3832960 -    -5    -4.015   TCACCCAGGAAATAA              CCTGGC TTGCC GCCTGG              TTCAGACAGGTCAGG  62 171
        norR 3828391 .. 3828411 -  -6.7  -4.20696   TGATGAAGCGCAAAA            TCACCGCCG CGC CGGTGGTGG            ATAGCCATGGCCGCC  69 87
        mltB 3822142 .. 3822165 - -14.6  -3.68351   CGGCCAGGAGTGAAA          CGTGAGTGGC GTAA GCCACCCACG           TTTTCAGGCGTTAAC  95 36
        pncC 3821497 .. 3821516 -    -8  -2.77899   CTGTTGCAGCAATTA            TACTGTAT GCTC ATACAGTA             TCAAGTGTTTTGTAG  59 26
        recA 3820326 .. 3820362 - -11.8  -4.85782   CTGCTGAAAAACAAA   TGCAA-AAAAGGGCCGC AATC GCAGCCCTTTTATTACA    TCAAGTGATTAGAAA 100 34
        recX 3819722 .. 3819735 -  -3.8  -3.09516   CGGGTCACTACGCAA               CCGT TGTTGG ACGG                ACCAGCTACTGTAAA  47 93
        alaS 3816923 .. 3816946 -  -2.4  -3.41602   GTCACGGCATCACAA          TCTGTTAAAC GTAA GTTTAGCCGA           TATACACAAACTCAA  45 123
        csrA 3816618 .. 3816631 -  -2.4  -2.54298   GAGACGCGATAATAT               CAGT AACTTG ACTG                CTGGGATTTTTCAGC  39 11
JJN11_RS18405 NONE
JJN11_RS18400 3816099 .. 3816109 -  -5.4  -3.29558   CAATATGAAGTAATA                 GATG GTG CATC                 CGGGAGGATTCGAAC  54 17
JJN11_RS18395 3815934 .. 3815944 -  -6.8  -3.93256   CAGACCTTGAAACAA                 CAGC TTC GCTG                 TTATCTCGGAGAATA  66 41
JJN11_RS18390 3815588 .. 3815598 -  -5.4  -4.70169   CGACATGCAATAAAA                 GATG GTG CATC                 CGGGAGGATTACTCG  75 149
JJN11_RS18385 3815419 .. 3815435 -  -7.3  -3.81951   TCGCAGACCATGAAA              CAACAGC CTG GCTGTTA              TCTCTGAGAAGATGG  69 38
        yqaB 3814613 .. 3814637 -  -9.3  -2.93073   GCTGGCGAATAATGA          GGCGAGTGACA GTG TGTCACTCACA          GTAAGCGAACATCCA  66 21
JJN11_RS18375 3814160 .. 3814184 -  -2.9  -3.04398   CCCGCCTGTCAAAAT          CATTTCATTTA GCA TAATTGTAATG          GTTTCTGGTCACAAA  43 49
        gshA 3812431 .. 3812445 -  -2.1  -3.11999   AGTAAAGCTATCTAA               TAACG GCATA CGTCA               CCTCCGATAGTGATT  43 172
        luxS 3811886 .. 3811919 -  -7.6  -3.25877   ATTAATAGAGTAATA    TTACCCGGCATACTCC TTGC GAAG-A-GCCGGGTAA     TTTGCTAGATGTGCA  62 30
JJN11_RS18360 3811296 .. 3811314 -    -3  -3.01208   CCCGATAATAACAAT             CCGCAGTA CAG TGCTGCGC             TAAAATATTTATTCA  43 38
JJN11_RS18355 3808396 .. 3808415 - -12.2  -5.46706   ATCTGAAAAGAAAAA            CGGATCTG CATG CAGATCCG             TTTTTTTATGGGCGC 100 49
JJN11_RS18290 3794906 .. 3794930 - -12.2  -2.72379   TCAAGGCCTGAAGCA         CGGCGACTGGC GAAA GCCAGTCGC-G          TCGTTATTGCGAGTC  78 29
        stpA 3793297 .. 3793319 -  -5.5   -2.8507   GCAGGCAAGTAACGA           GCAGGGCGA GAAGT TCACCCTGA           AAGCAGCGGATGTGG  47 124
JJN11_RS18270 3792321 .. 3792333 -  -9.1  -2.96963   GATCATCAATAATCA                GGCGA ACA TCGCC                ATTGGCGCGCCGGAT  59 505
JJN11_RS18260 3790933 .. 3790954 -  -8.7  -2.53263   GCTATTTTTAATTCA           GGCCAGC-GC GAA ACTGCTGGCC           GGGAGTATTACGCGC  60 33
        fdrA NONE
JJN11_RS18250 NONE
JJN11_RS18245 NONE
JJN11_RS18240 3785369 .. 3785385 - -10.8  -2.91912   TTACGCATTCACACA              GCGGGC GGGAA GCCCGC              CAGGGTTAAGCCACA  74 31
JJN11_RS18235 3783788 .. 3783812 -  -5.1  -3.08173   AGGAACCCCAGGTAA          TTTAATTGCCT TTA AAGCAATGAAA          TAATCACATAAAAAT  51 162
JJN11_RS18225 NONE
JJN11_RS18220 NONE
JJN11_RS18215 NONE
JJN11_RS18210 3778365 .. 3778378 -  -2.3  -3.07935   ACGGTACTCACCGAA               TCGGC TGAA GCCTA                CGACGGTTTCTTCCC  41 175
JJN11_RS18200 3776658 .. 3776671 -  -5.2   -3.1875   TACAGTTCAACCCAA               CGCC TGAGCT GGCG                ATCCACGTCGGTTAC  51 256
JJN11_RS18110 NONE
JJN11_RS18105 NONE
JJN11_RS18100 NONE
JJN11_RS18095 3756479 .. 3756506 -   -12  -5.06414   GTTGCGCAATAAAAA        GCCGGGTGACGGC TTT GCCTT-ACCCGGC        CTACAAAACGATACT 100 48
JJN11_RS18060 3750523 .. 3750555 -  -9.1  -3.48276   TGCGTTCCGACATAA     CGGCGGCACGCCTG ATGTTG CAT-CGCGCCGCCG      GGCGGTCCGGGTGAG  71 89
JJN11_RS18055 3749659 .. 3749675 -    -5  -3.21099   CTGGCCGATGATGAA              GGGGTG ATAGA CGCCCC              CATAGCCAAAGATCC  49 396
JJN11_RS18030 NONE
JJN11_RS18025 3745426 .. 3745484 - -18.1  -3.72695   ACCCGGCCTACCAAA CCGGCACGCCCTTGTAGGCCGGGCAAGCG AAG CGC-CGCCCGGCAAAC-AGGTCGCACCGG TGCAAACCCACCAGG 100 49
        nanR 3718125 .. 3718141 -    -3  -4.03909   GACACATTAAAAACA             GCGCGAT CGAA AT-GCGC              AGAACGCGATCGAGT  56 61
        nanA 3717120 .. 3717137 - -12.7   -3.1637   ATACAGCTTTAGTAA             TGCCGGG TATG CCCGGCA              TCCGGCGTTGTCTTA  84 38
JJN11_RS17980 NONE
JJN11_RS17975 NONE
JJN11_RS17970 NONE
        nanQ 3713457 .. 3713500 -  -7.5  -3.02144   GCATGTTGCTGAATA TCCTCTGTCCGCACCGCAAAC CGCT GTCTGCGG-GCGT-CAGATGA GTGTAGGAAGAGTTA  59 38
JJN11_RS17960 NONE
JJN11_RS17955 3711895 .. 3711909 - -12.8  -3.60074   TACAAAGTCCTGAAA               GCCCGC AAT GCGGGC               TTTTTTGTTTCTACC  89 91
JJN11_RS17950 NONE
JJN11_RS17945 3710324 .. 3710351 - -10.6  -3.09299   ATACAAATAATTAGA        CTTAACCTCGCC ATTC GGCGGGGTTAAA         CAAAGGACTGCATTG  72 21
JJN11_RS17930 3707145 .. 3707160 -  -8.2   -5.4505   GCTGGCAATAAAAAA              GCGCCC TGCA GGACGC               TTGCTCTTTAACAAT 100 197
JJN11_RS17920 NONE
JJN11_RS17915 3705389 .. 3705399 -  -4.6  -2.65942   TTCATACCGAAACAG                 CGGA AGG CCCG                 GCACCGGGATCATCC  46 77
JJN11_RS17910 NONE
JJN11_RS17905 NONE
JJN11_RS17900 NONE
JJN11_RS17895 NONE
JJN11_RS17890 NONE
JJN11_RS17885 NONE
JJN11_RS17880 NONE
JJN11_RS17875 3700122 .. 3700138 -  -3.6  -3.39895   GGGTGTACTAATCAA              CGGGGA GCAGG TCACCG              GTACTTGCCCGTTTG  48 166
JJN11_RS17865 3698546 .. 3698577 - -15.9  -2.72144   GGATTGGCTGGAAAG      CCGGGAATGCCAG GTTTGG CTGGCACCCCCGG       AAGGCCTGGTTATGG  86 392
JJN11_RS17850 3697455 .. 3697466 -  -4.4  -4.45544   TTGCATCAACTAAAA                GTTG TTTA CAAC                 AGTTTTGTACTAATC  65 69
JJN11_RS17845 3697092 .. 3697106 -  -8.5  -5.60993   TGGCGCATAAAAAAA               CGCCC TCAAG GGGCG               TTTCTAGAATTCATT 100 44
JJN11_RS17840 NONE
JJN11_RS17835 NONE
JJN11_RS17830 3695317 .. 3695334 -  -5.5  -3.25015   TTTAACCATTATCAA             GCCCACC AGCT GATGAGC              TTTGTAATGACTACT  52 504
JJN11_RS17820 3694938 .. 3694957 -  -7.8  -5.46657   GACGGCAATAAAAAA            CCACCAGC GGAT GCCAGTGG             CTTAGTTATGTAAAA  95 64
JJN11_RS17815 3694289 .. 3694303 -  -8.6  -2.72344   CTCCACGCTGAATTA               TCAGAC ACC GTCTGA               ATTTGCAGCGGGCTG  58 213
JJN11_RS17805 NONE
JJN11_RS17800 NONE
JJN11_RS17795 NONE
JJN11_RS17790 NONE
JJN11_RS17785 NONE
JJN11_RS17780 3686390 .. 3686401 -  -7.2  -5.76633   GCAGATATAAAAAAA                GCCC TTTC GGGC                 CGGTTCAATGTCGGG 100 45
JJN11_RS17775 NONE
JJN11_RS17770 NONE
JJN11_RS17765 NONE
JJN11_RS17760 NONE
JJN11_RS17755 3684021 .. 3684042 -  -9.3  -4.72272   GTGCTCCATTAAAAA           TGACGGGGC AAGC GCCCCGCCG            GTCAGGAAACGGTAA 100 27
JJN11_RS17750 NONE
JJN11_RS17745 NONE
JJN11_RS17740 NONE
JJN11_RS17735 NONE
JJN11_RS17730 NONE
JJN11_RS17725 NONE
JJN11_RS17720 3678571 .. 3678586 - -10.4  -5.24531   ATTCTCCATAAAAAA              GCCACC CGAA GGTGGC               TTAACTTAATTCATT 100 44
JJN11_RS17715 3677918 .. 3677933 -  -3.9  -5.60993   GCGCCCATAAAAAAA              GCCAC ACGAAG GCGGC               CTGAATGAAAGGTTT  91 44
JJN11_RS17710 3672934 .. 3672949 -  -8.2   -5.0925   CCTTAAAATGAAAAA              CCCAGC CGGA GCCGGG               TTATGTGGTCTGAGG  93 50
JJN11_RS17705 NONE
JJN11_RS17700 NONE
JJN11_RS17695 3669554 .. 3669572 -  -7.4  -5.75342   GGGCCGTAAAAAAAA             GCCTGC TGATTAG GCAGGC             AAATGAAATCAGCAC 100 371
JJN11_RS17690 NONE
JJN11_RS17685 3668126 .. 3668153 -  -2.7  -3.85817   AGCTTCTTCCAGAAA        TGACACCCC CCTGCTTTAC GAGGCGTCA         TTCCCTGGGCATTAT  54 84
JJN11_RS17665 NONE
JJN11_RS17660 3664835 .. 3664851 - -12.3  -4.39571   TTCAGAAATGCAAAA              GGTGCTC AAT GAGCACC              TTTCTTGTTCTCTCT  95 86
        grpE 3660932 .. 3660976 -  -6.4  -3.13403   CGTCGCGGAGTAAGA TGTTGTAG-GCCGGGTGA-GGC GAC GCCGCCACCCGGCACTACGGGA GGCAAGTTACGCCTT  57 32
         ffh 3657076 .. 3657107 -   -18  -4.63218   CTTGTGTGAATAAAA      CACCGGGCCCCATC GAGG GAAGGAGCCCGGTG       TCATATTAAAAGCCC 100 223
        rpsP NONE
        rimM NONE
        trmD NONE
        rplS 3655012 .. 3655033 - -15.1  -5.77988   AGAGAGATAAAAAAA           GGGCCGGCC ATTC GGCCAGCCC            TTTTTACAGGATGTC 100 54
JJN11_RS17600 NONE
JJN11_RS17595 3652633 .. 3652649 -  -6.5  -4.65168   ACTACAGGCGAAAAA              TGCCCAG CTG CTGCGCA              CTGCCATGCACGACC  78 491
        aroF 3649583 .. 3649593 -  -4.6  -2.53392   AAACCTCTTAAGCCA                 GACG CGT CGCC                 AGCTGGCCGTTCAAA  46 7
        tyrA 3648406 .. 3648420 - -11.4  -6.09196   CCCAAAATAAAAAAA               GCCAGC AGT GCTGGC               TTTCAGTATATACAT 100 48
JJN11_RS17565 3647245 .. 3647278 -  -3.8  -4.07687   AGGTGCCGGCCAAAA     CCACCCTGCTGA TGGCGACGGG CCAGCAGGCCGG      TGCGCTGGTTGAGGC  60 257
        rluD NONE
        yfiH 3642873 .. 3642884 -  -3.6  -5.09259   TATGCGAAAAGAAAA                CGGC GCGT ACCG                 GATCGTCTTGATTCT  75 46
        clpB 3640160 .. 3640190 - -18.5  -3.53012   TGCCTGGTTTTTAAA       CAAAAACGAGCCC TCCGG GGGCTCGTTTTTG       CGTTTTGTGATTTAC 100 37
JJN11_RS17525 3638141 .. 3638157 -  -6.5  -2.55847   AACCGCTAGACGAAG              GGGACAC GAG GTGTCAC              GACTTCGCAGCCGTC  52 101
JJN11_RS17520 3638000 .. 3638035 -  -4.8  -4.00532   TTTTTAAAGAGCAAA    TATCGCAAACATGACT CTGA AGTCAGTTTTGAGATA     CTGATTGGTTGTGCC  62 61
JJN11_RS17515 3634936 .. 3634950 -  -6.4  -2.64274   ATTTTCTCAAATCCA               CCGAAA CAG CTTCGG               CGTTGTAAGGTTAAG  53 32
         rrf 3634609 .. 3634630 - -13.7  -5.46698   TGGAAAAGCAAAAAA           CCCCGCACC ATAA GGTACGGGG            TTTTTTAATTTGATG 100 40
JJN11_RS17505 3633942 .. 3633959 -  -2.6  -2.57132   CCCCTGTCTTACAAT             GCGGGC CAAAGC ACCCAC              TCCAGTAAAACCAGA  40 138
JJN11_RS17500 3632553 .. 3632601 -  -8.9  -2.61695   TGGAGCTGGAAAGAT TTTGCCTG-GGACATAGCCGGT GCGACT ACCGGCTATGCCGTCTGGCAGA TGGCGGATCATTAAA  63 36
JJN11_RS17465 3625458 .. 3625468 -  -8.2  -2.70946   TGGCTGGAGAAACAG                 GGCG AAA CGCC                 GATTGACTGGATGCC  54 159
        grcA 3624077 .. 3624094 - -12.7  -5.54885   AAGAGTAATAAAAAA             GCCGGGT TCTA ACCCGGC              TTTTTTTATCTGTAC 100 52
JJN11_RS17445 3621490 .. 3621504 -  -3.5  -3.28003   GGAAGATATCACGAA               GCGCA TGCCT TACGC               CCGCCAGGTGGAAAA  45 392
        rpoE NONE
        rseA NONE
        rseB NONE
        rseC 3617150 .. 3617169 - -11.4  -4.96996   TGTAAATAAAACAAA            GCCCGGTA ACAT CACCGGGC             TTCTGAAGAGAGCGT 100 17
        lepA 3615149 .. 3615161 -  -3.4  -3.62572   CAGGATCAGGGCAAA                CATG TTCGC CATG                CCAACTCCTTAAGGG  53 41
        lepB 3613995 .. 3614041 - -14.5  -2.60776   AATGCGTCAAAAATG CAGCACACGAAACCGTCCTGA GAAAG CCAACGCGGTTTCGTGTGCCG TGGCACTGAATCAGC  90 170
         rnc NONE
         era NONE
        recO NONE
        pdxJ NONE
        acpS 3610062 .. 3610074 -  -6.9  -3.03441   TACCATTGCCGAAGA                GCAGG CCA CCCGC                AGCGCGGCGATCTCG  54 474
        murQ NONE
JJN11_RS17365 NONE
        yfhb 3606307 .. 3606329 -  -9.8  -4.11394   ACTCCAGTCTGAAAA           GCGGGCGCAT TAT ACACACCCGC           TATGCATAATCACAA  81 43
        tadA 3605575 .. 3605589 -  -7.1   -4.2349   TGGTCAGACGTAAAA               CAGCG TCTGC CGCTG               CTGAGCCAGAAGCCT  73 213
        purL 3599664 .. 3599696 - -23.7  -2.87683   ACATGCGTTCAGATA      CAACAAAGCCGGGTT AAA AACCCGGCTTTGTTG      CGGAATGAGGCGGTG 100 512
        qseE NONE
        qseG NONE
        glrR NONE
        glnB 3595569 .. 3595586 - -12.7  -4.74103   GCTGTAATGCAAAAA             GCCCCTC AGTA GAGGGGC              TTTTTTTTGCCCGGC 100 86
JJN11_RS17315 3592775 .. 3592790 - -11.8  -5.28176   GTTAGCCATAAAAAA              GGCCGC TTGC GCGGCC               TTTCTGTTCTGCGAG 100 47
JJN11_RS17300 3587599 .. 3587614 - -10.4  -3.05819   TACAGAGGGTTAACA              GGTGGG TTTC CCCACC               TGCGAGGTCAGTTAA  72 37
JJN11_RS17295 NONE
JJN11_RS17290 3585201 .. 3585221 -  -3.3  -3.37935   ATGCAAAACCATGAA           TC-CCTCC CGTTTT GGAGGCGA            TAGTCTGGCGGCAAA  48 74
JJN11_RS17285 3583923 .. 3583934 -  -3.6  -3.29263   ACAGTCTTTTCAGAA                GGAG GGTG CCCC                 GCGCGAAGCGGCCCT  47 152
JJN11_RS17275 NONE
JJN11_RS17270 3580988 .. 3580998 -  -5.4  -3.62096   TGTCATGACCCCAAA                 GCAA AGC TTGC                 AAACTAAAACATCCC  59 96
JJN11_RS17265 3580016 .. 3580026 -  -6.8  -4.08216   CCACGCGTGGTAAAA                 GCCA TGC TGGC                 GAACATGCGTGACGA  68 135
        trmJ NONE
        iscR 3577631 .. 3577647 - -15.1  -2.81464   GTACGACCGAGTACA              CGGGGCG TTA CGCCCCG              GCCTGATTCTGAAAT  95 54
        iscS NONE
        iscU NONE
        iscA 3575550 .. 3575577 - -14.2  -4.10552   GCTGATTAAAGCAAA        CCCCACACACAGC CTG GCTGCG-GTGGGG        TTAACAGGTGATGCG 100 44
        hscB NONE
        hscA NONE
         fdx NONE
        iscX 3572569 .. 3572590 - -15.1  -4.09805   TTAGCAACAAGCAAA           CGGGCCGCC TGAA GGCAGCCCG            TTACGTTTTTATTCT 100 34
        pepB 3571177 .. 3571188 -  -7.2  -5.06451   CACTACTTCAAAAAA                CGCC GGGT GGCG                 CTTTGCTTACCCGGC  88 90
        sseB 3570355 .. 3570373 - -12.4  -3.33696   TGCTGCTGGAAGCAA             CGGGGTGA GTG CCACCCCG             TAAGATTCAGATAAT  85 32
JJN11_RS17180 NONE
        pbpC 3558109 .. 3558119 -  -2.6  -3.09878   TGGATGCATGTAACA                 TTTT TTT AAAA                 TAAGACGAGTTTTAA  45 70
         ndk 3557459 .. 3557498 - -15.1  -4.09685   GTGGAGGGTTGAAAA  GAAACGCCCCGGA-AAGC GATCG GCTCATCCGGGGCGTTAC  ATTGTACAAAGTCTG 100 104
JJN11_RS17165 3556220 .. 3556236 -  -2.1  -3.07344   CCACGGCGCAATAGA              CGCGCCG TGA CGGCATA              ATAATTACACGGACT  42 30
        rodZ NONE
        ispG 3553727 .. 3553757 - -11.2  -5.03994   TTCTATAGACAAAAA       TGAACCCTGGGGTT CAT AACCGAAGGGTTCA       ATCATACACAGGAAG 100 60
        hisS NONE
JJN11_RS17145 NONE
        bamB 3550555 .. 3550578 - -11.7  -4.86862   TTTAAAAAATCAAAA          CGGCCCCTG AAGCAA CAGGAGCCG           TTGAGTATACTACAA 100 50
         der 3548981 .. 3548997 - -10.8  -5.64274   TCAGGCATAAAAAAA              CCCGCG ACAGG CGCGGG              TTTTTTGGCAGAGCA 100 48
JJN11_RS17130 NONE
JJN11_RS17125 NONE
JJN11_RS17120 3545383 .. 3545398 -  -6.8  -4.07124   TATCACGGAGAGAAA              CG-CGCC GGC GGCGACG              TGGCGGCAGCCATTG  68 420
JJN11_RS17105 3543090 .. 3543100 -  -8.2  -3.79481   GAAAGCGAAGTGAAA                 GGCG TGA CGCC                 GGCCAGGAAAACCCG  68 65
        guaB 3540103 .. 3540125 - -14.8  -4.94058   GCAAGTGAAACAAAA           TCGCCCGGCT TAT AGCCGGGCGT           GGAAATTTATCAGGA 100 35
        guaA 3538448 .. 3538464 - -13.7  -5.47218   GGCCAGCGAAAAAAA              GCCCGCA CGA TGCGGGC              TTGATTTATATGCGC 100 55
JJN11_RS17070 3535769 .. 3535791 -  -6.9  -3.01712   GTTTGCCCCTGAAGA           GTACGCCAG ACGCA CCGGCGTGC           TGCTGATCCCGGCCC  53 213
JJN11_RS17060 NONE
JJN11_RS17050 3530787 .. 3530821 -  -9.3  -3.61398   CGTGCTGCTGAACAA    CCAGCGCCAGGCGACG ACGA CGCCACCT-ACGCTGA     CGCTCACCACGGACG  69 201
JJN11_RS17025 3523692 .. 3523709 -  -9.8  -6.08563   AAGAGACAAAAAAAA             CCGGCG GGGGAT CGCCGG              CTTTTGTGCGGATTT 100 121
         upp 3522885 .. 3522903 - -10.3  -5.81412   TTTATTCAAAAAAAA             GCCGACT ATCAA AGTCGGC             TTCTTTTTCGTTATT 100 44
        uraA 3521509 .. 3521529 - -11.8    -3.494   CAAGCGGGGAGAGAA            CCGGGCGG ATCGG CCACCCGG            TTGCAGGATCAATGC  83 34
JJN11_RS17010 3520717 .. 3520741 -  -9.2   -2.5785   GAAGTAAGCAGGAAT         GGCCCGGTAGC GCGT GCG-CCGGGCC          TACAGATTGAGAATG  63 25
JJN11_RS16995 3517453 .. 3517467 -   -10  -2.62038   TTCAAAACCAGCAAT               CACCAC GAT GTGGTG               CTGGAATGGGTGAAA  62 148
        dapA NONE
        bamC 3514355 .. 3514373 - -11.7  -4.70319   GCACGAAAATTAAAA             GGGCTGG ATTAA CCAGCCC             CTTTTTTTACTTGCT 100 32
JJN11_RS16970 3513448 .. 3513460 -  -4.9  -4.59773   TCCCACCTCGAAAAA                TATCA TCT TGATA                ACAGGTATGATCGTA  71 122
JJN11_RS16965 NONE
JJN11_RS16960 3510563 .. 3510574 -  -4.4  -5.10497   AAGTTATTGAAAAAA                TTGC CATT GCAA                 AACCGTCTGCTTCAG  77 2
        ypfH 3509745 .. 3509780 -  -7.4  -2.74845   ACCAGAAGAAGTAAT    GCCTGCCCCTCTCCCC CGGC GGGGAGAGGGTTATCC     GCTAAAAGAACTCCA  57 27
        ypfM 3507494 .. 3507512 -  -7.3  -5.55769   CTTGATAATAAAAAA             GGCGTCC TTACC GGCCGCC             TTTTTTGTGTGTTAA 100 81
        aegA 3500288 .. 3500308 -  -2.3  -3.54741   TACTACGCTGCGAAA            CCCGCCTTG TCG CCCGTCGGG            TTAATGTTCGGTGGG  47 26
        nudK 3499569 .. 3499599 -  -6.9  -2.54098   TCCCGGAAGCAATAG       CTGAACAGACAGA GCGTA TCTTCCTGCTCAG       ACCGGGGTTGCTCAA  52 94
JJN11_RS16910 3498058 .. 3498070 -  -6.2  -2.54801   TATCCTGAAAGACAG                CGGC GGCAA GCCG                GATCTGATTTTGATT  48 454
        maeB 3492761 .. 3492778 - -12.7  -4.22883   TATGAGCCAAAAGAA             GGCAGCC CGGA GGCTGCC              CTGAAGGATTTTATT  93 131
JJN11_RS16880 NONE
JJN11_RS16875 NONE
JJN11_RS16870 3489253 .. 3489274 -  -8.7  -5.40072   TCCTCCTGAAAAAAA           GATGCCACG AAGT CGTGGCATG            GTTGGCGGCGATTAT 100 79
JJN11_RS16865 3488287 .. 3488300 -  -3.7  -4.08064   AAGGGTGCGGGAAAA               GTGCC GGGT GGCGC                TTACGCTTGCCCGGC  58 60
JJN11_RS16860 NONE
        cysT NONE
        cysW NONE
        cysA 3484257 .. 3484283 - -10.1  -5.06414   GCTGTCCAATAAAAA        GCCCGGT-GGCG CTGA CGCTTACCGGGC         CTACACAGAGCATAT 100 94
        cysM NONE
        pdxK 3482456 .. 3482473 - -12.7   -4.9792   GACCGCACAGAAAAA             TGGCGCC TTCG GGCGCCA              TTTTTGTTTGTCAGA 100 36
        zipA 3476302 .. 3476318 - -10.8  -4.99861   CATTAATGAGAAAAA              CCCCCG ACAGG CGGGGG              TTGAGGAGGTGTGAA 100 55
        ligA NONE
JJN11_RS16795 3473647 .. 3473661 -  -2.1  -4.11394   AGTGGATCGCCAAAA               CCGAT CAGTC ATCGA               TTTTGCTGGTGGTCT  59 411
JJN11_RS16785 3471865 .. 3471881 - -12.3  -6.10295   GGAAGAGAAAAAAAA              GCAGCAG GAG CTGCTGC              AGAACCAAATCAAAA 100 171
        gltX 3469292 .. 3469309 - -12.7  -5.46657   CAGCGCAATAAAAAA             CGGCAGG GAAA CCTGCCG              TTTTATTTTTTACGT 100 46
JJN11_RS16735 3468216 .. 3468232 -  -3.7  -2.80816   TCTTTACGCACCAGA              CTCTG TTGGGTT CAGAG              TTTGGTGGAGCTAAG  43 28
JJN11_RS16730 3468089 .. 3468108 - -12.8  -5.60993   GCGGGCATAAAAAAA            CCCCCGCC GTCT GGCGAGGG             TTAATATTTTGGTGG 100 35
JJN11_RS16725 3465691 .. 3465708 -  -9.8  -5.67967   ATCAGCATAAAAAAA             CCGGGG ATAACA CCCCGG              TTTTTTTTCGTCTGT 100 40
JJN11_RS16715 3462885 .. 3462900 - -11.8  -4.81551   CACTGATACGAAAAA              GGCGCC TTCC GGCGCC               TTTTTTACAATCCCA 100 30
        ipdC 3459198 .. 3459210 -  -5.5  -2.82193   ATGAGATGCAGCAGA                TGGCC TTC AGCCA                GATCTTCAGCGTGTC  47 381
         glk 3456998 .. 3457010 -  -4.1  -3.68222   CGTCAATCTGAACAA                GATCC GCG AGATC                GAACCCTGGTTCAAC  54 175
        alaC 3453011 .. 3453029 -   -16  -5.47821   ATGTAGTCAAAAAAA             CAGGCGCC CAA GGCGCCTG             TTTTTTTTGGGGTTA 100 38
JJN11_RS16645 NONE
JJN11_RS16640 NONE
JJN11_RS16635 3440810 .. 3440826 -  -3.7  -3.10344   GTTCTACGTAATACA              TATTCAG CCT CTGTATA              GCCTGTGAGGTTAAT  46 36
JJN11_RS16630 3440465 .. 3440481 -  -5.8  -4.18018   TCCCGGTACGCAAAA              GAGGCT AAATA AGCCCC              TCGTCCTCATCCGCG  69 13
JJN11_RS16625 NONE
JJN11_RS16615 3434947 .. 3434963 -  -4.3   -4.0942   TATTCACCAGAGAAA              CCCCATC AGA GAGAGGG              GAAAAATGTACCCTG  60 123
JJN11_RS16610 3433488 .. 3433529 -  -8.8  -5.71712   CCGCAGATAAAAAAA GAGAGGGTTGTTGCCG TTATCTCTGC CAGCAACAACCCCGTC  AGCCTCTCAGGGCGT 100 42
JJN11_RS16605 NONE
JJN11_RS16600 3429869 .. 3429891 - -14.9  -3.76373   GTGGTAACACTTAAA           GGCCACCTC CCGGC GAGGTGGCC           TTTCTCCATACTTAT  95 40
JJN11_RS16585 3426164 .. 3426184 -  -7.5  -3.57797   GTTAAATGGATATAA            CGAGCCCCT CCT AAGGGCTAG            TTGCAGGTTCGATTC  60 478
        mlaA 3424039 .. 3424057 - -10.3  -5.28176   CGCAGGGATAAAAAA             GGTGAGC CTCGC GCTCACC             TTTTCTTTTTTATTC 100 35
JJN11_RS16555 3422012 .. 3422031 -   -15  -3.88062   AGAGAGGAGACGAAA            CGCCTCCC GGAA GGGAGGCG             CGGGAAGGGATTAAC 100 36
        fadI NONE
        fadJ 3418289 .. 3418301 -  -6.9   -4.7078   TTAACGAGGTAAAAA                CCCGA TGG CCGGG                CATTGTGCCTGATCC  80 153
        sixA 3417560 .. 3417570 -  -2.4  -3.84246   TTCTCAAGCAGCAAA                 CCCC ACT GTGG                 CTGGCTCAGCATCCA  53 189
        prmB 3416027 .. 3416040 -  -9.5  -3.66178   TTGCGCAATGTGAAA               CGGGC CGAA GCCCG                TTGGATTAATCTTTG  76 31
        aroC NONE
        mepA NONE
JJN11_RS16515 NONE
JJN11_RS16510 NONE
JJN11_RS16505 3411899 .. 3411915 -  -2.1  -4.09685   TCTGACCCCGCAAAA              TCCAGCC AAC GGCCAGC              ATTGCATCGGCGCAA  56 522
        fabB 3408959 .. 3408976 - -12.7  -5.64274   TCAGGCATAAAAAAA             GGGAGCC ATCA GGCTCCC              TTCTACTATACATTC 100 47
JJN11_RS16490 3407708 .. 3407746 -  -5.3   -3.3972   CTACAAAAGCACGAA  CTGTAGGCCGGGTAA-GGC GCA GCCGCCACCCGGCA-ACAA  ACAGCTAACCCCGGC  54 30
        pdxB 3405363 .. 3405392 - -15.8  -5.72622   TCCAGAAATAAAAAA       GCGTCCCTGGCGG GGTAT CCGCCAGGGA-GC       ATTAAGAAGACATTA 100 38
JJN11_RS16475 NONE
        truA NONE
JJN11_RS16465 3402801 .. 3402813 -  -3.3  -5.24531   ACTTTGGATAAAAAA                GTGGT CGA ACCGC                AGTCGTGCCTTTATT  79 36
        accD 3401743 .. 3401765 - -14.8  -4.61873   GGTTAGAAAGCAAAA           GGGCAGCGCC ACT GGCCCTGCCC           TTTTCAGTTATCAGG 100 36
        folC NONE
        dedD 3399652 .. 3399673 - -10.2  -5.95539   GCGTAAATAAAAAAA           GCGCTGAA AAAATA TTCAGCGC            CCCAGGCGGGTCACC 100 97
        cvpA NONE
        purF 3397480 .. 3397491 -  -7.2  -2.53263   GGGAGTTGCAAGCGA                GGGC AGAT GCCC                 TCGCCTGCGATAGTG  56 42
JJN11_RS16435 3396793 .. 3396809 - -12.3  -2.57132   TCGCTGTTGCAGAAT              TGCCCTG AAA CAGGGCA              CGTTGCGGTGAAATG  78 65
        argT 3395714 .. 3395760 -  -7.3  -3.53091   ATCCTGGTTCGCAAA GGCCATTGTCGCACCATAACGG GGAG CCATTATGGTGCG-CACCCGTC AGTTCCGGTTAGTCG  64 34
        hisJ NONE
JJN11_RS16420 NONE
        hisM NONE
        hisP 3392398 .. 3392422 -  -7.7  -3.06915   ACCGACTGGAGGTAA          GTGCGGCCTGA ATG CCGGGCGGCAC          TGCGTTTGCCCGGCC  60 86
        yfcF 3389080 .. 3389093 -  -3.8  -2.78463   AGCCGCCCCATCATA               CCTG AATCAG CAGG                CCTTATCAGCCAGCC  45 31
        yfcE NONE
        yfcD 3387860 .. 3387877 - -12.7  -4.81249   TGCCAAACGTAAAAA             GGCGACC CCAG GGTCGCC              TTTTTTATTATCACC 100 42
JJN11_RS16360 3383575 .. 3383601 -  -7.3  -5.03314   GGCAGCTTTAAAAAA         GACACGGTAAC GGTGG GTTACTGTGCC         TTCTTTTGGTCATCG  88 54
JJN11_RS16355 NONE
JJN11_RS16350 3382343 .. 3382360 -  -8.4    -5.252   TAGTGCCATAAAAAA             GCCCCA GCAATG TGGGGC              TAAATCATGTGATTA  95 38
JJN11_RS16345 3380083 .. 3380104 - -10.1  -5.09225   AGGCGATTGAAAAAA           TCGCCCAGC AGAA GCTGGTCGA            CATGGTGCCGGACGA 100 384
        lrhA 3376517 .. 3376550 - -11.2  -5.47218   TCTCATGCAAAAAAA    GAACCACTG-TGC-GC AGAG GCAGCAGCAGTGGTTC     GTTATCGTCTGGACG 100 69
        nuoA NONE
        nuoB NONE
        nuoC NONE
        nuoE NONE
        nuoF NONE
        nuoG NONE
        nuoH NONE
        nuoI NONE
        nuoJ 3366226 .. 3366241 -  -7.6  -2.71712   GTCCGTGTTGTAAAG              GGATCA TGCG TGATCC               TCCGTTTTTCTTTTC  58 13
        nuoK 3365924 .. 3365939 -  -2.5  -3.18199   TAATGGTTAAGGCAA              GCATG TTCATC CACGC               AACTCACTTACTGAA  43 16
        nuoL 3364000 .. 3364018 -    -3  -2.80966   AGGGAATTAATATTA             GCCAGGGT AGT AACATGGC             GATTTGCATTCCTTT  42 99
        nuoM NONE
        nuoN 3360990 .. 3361003 -  -9.5   -5.7946   CCGGCAATAAAAAAA               CCCGC CGAA GCGGG                TTTTTTTTTCTGCCG 100 44
JJN11_RS16250 NONE
        elaB 3357946 .. 3357960 -  -2.8  -4.62069   CTCCCAGCTCAAAAA               CCTCAC ATT ATAAGG               GGTACTAAACAGAAA  65 86
        menF NONE
        menD NONE
        menH NONE
        menB 3353226 .. 3353242 -  -2.1  -3.57144   TCTGCCAGCGGTAAA              CCTGCGC GCT GCGCATT              ACGGGTTCCGTTTGT  47 24
        menC NONE
        menE 3350629 .. 3350665 - -11.7  -2.80816   GGTGTATGCAGTACA   CAGCACCACCTTC-GA CCTGAT TCTGATGGTGGTGCTG    GGGGTGTTCGGCTAC  70 278
        tctD NONE
JJN11_RS16190 NONE
JJN11_RS16185 3345051 .. 3345074 - -11.6  -4.11404   CGGAGAGGAGAGAAA          CTGGCGCGAC GGAC GCCGCGCCGG           AGGGGTTAGAAGCCT  91 31
JJN11_RS16180 3343692 .. 3343724 -  -7.8  -2.89742   TGCAAGTGGCAGATA     GAGATGTCCACCAGC AAGC GCTG-CGAACATCCC      ATCACGCTGCTGGCG  56 88
        glpT NONE
        glpQ 3336923 .. 3336948 -  -7.5  -3.59315   TCAACGACGGTGAAA         TTTTGCCCTGC TGCT GCCGGGCGAAA          GGGGATATAGAGATC  64 133
        gyrA 3329356 .. 3329372 - -15.1  -5.18371   CGCGACAAAAGAAAA              GGGCCGG AAA CCGGCCC              TTTGTCGTCAGAAGA 100 43
        rcsC 3326381 .. 3326394 -  -8.1  -5.64873   GGCAATAATAAAAAA               GCCCA TTTC TGGGC                TTTTTTTATCCCCGC 100 31
JJN11_RS16110 3321061 .. 3321076 - -11.8  -5.79588   GTAAAACCAAAAAAA              GGGGCC ATTT GGCCCC               TTTCGCAAGAGTACG 100 47
        apbE NONE
         ada NONE
        alkB 3318084 .. 3318109 -  -9.7  -5.60689   CCAGACAAGAAAAAA         CAGCCAGCAGT GTAA ACTGCTCGCCG          TTTACATCAAGAATA 100 51
JJN11_RS16090 3316371 .. 3316411 -  -4.6  -3.68435   GCGGGGAAAACAAGA TCGCAG-GCCGGGTGA-GGC GAA GCCGCCACCCGGCACAGTTA CGCTCAGGCGGTACG  57 29
        mgtE 3314646 .. 3314684 - -11.1  -3.13403   TTGTCGCCATTAAGA  CCTTCAAC-TGGCAGAGC ATTC GCCCTGCCACGGTGAAAG   GCGCGCCGGTTGCGG  76 164
         mqo 3311689 .. 3311707 - -12.4   -5.7946   GCGCTAATAAAAAAA             GCCGGGTA AAT CACCCGGC             TTTTTAATATCAGAG 100 35
JJN11_RS16065 3310720 .. 3310731 -  -5.8  -3.23638   TGAAACAGGCATTAA                TCGC GTTG GCGA                 CTCAGTTTTTATCGC  55 27
JJN11_RS16060 3309360 .. 3309401 -  -9.6  -2.91593   CATCGCGGTATAAAG TGTGGTCCTTTTCATAAG TATCTC CTGATAGAAAGGACCACA  TTGGTAACAAAACGG  68 90
JJN11_RS16055 3307927 .. 3307948 - -13.7  -4.61633   AGAGATGGCTAAAAA           GCCAGCCCG ATGG CAGGCTGGC            TTTTGCACGAACATG 100 48
        yejK 3304533 .. 3304547 - -12.8  -5.75342   CTTGTCGAAAAAAAA               CCCCGC ATT GCGGGG               TTTTTTTATGGCCGT 100 40
        rsuA NONE
JJN11_RS16015 3300241 .. 3300257 - -11.5  -5.14965   ACCTGCATCAAAAAA              GGGCCCC GAC AGGGCCC              TTTTTTGTGCATCAT 100 37
JJN11_RS16010 3299563 .. 3299592 -  -5.7  -2.83164   CGACGCAGGAGTATA       CGCGTCAGCTGTTA GCG TTAC-GCTGACGCT       CAGAAAGGATTCTGG  52 25
        uxuA 3286469 .. 3286484 -  -8.2  -5.60993   GGGCCTACAAAAAAA              CCGGCC ATTG AGCCGG               TTTTTTTGTGTCTGC 100 85
JJN11_RS15950 3285080 .. 3285093 -  -6.7  -4.21194   GGCTACTACGCAAAA               CGCTT CGGT AAGCG                CTTCCTGATGCGCGT  69 359
        fruB NONE
        fruK NONE
        fruA 3280074 .. 3280093 - -13.6  -5.85011   TAAAAAGCAAAAAAA            GGGCAGAG TCGC CTCTGCCC             TTTTCGGATGAAGAA 100 44
JJN11_RS15925 NONE
JJN11_RS15920 3277903 .. 3277919 - -10.8  -4.13767   TTCCTTACCTGAAAA              CCCGGC GACTG GCCGGG              TATCCGTGATTCCAC  87 78
JJN11_RS15915 3276594 .. 3276622 - -20.4  -3.57971   AGAGCCAGCCGTAAA        CAGGCCGGGTAG TTGCC CTACCCGGCCTG        CGTCACTAGCCTGCC 100 31
JJN11_RS15895 3272536 .. 3272547 -  -3.6   -4.3739   TACCGGCGGACAAAA                CGCC GCCG GGCA                 GGATTACATTTCGCA  63 29
JJN11_RS15890 3270866 .. 3270883 - -12.7  -5.72622   TGGAGAAATAAAAAA             CCCGCTC GGCT GAGCGGG              TTAGAGAGAGGTGGT 100 45
        cirA 3268586 .. 3268612 -  -2.9  -4.37092   ACCGGGCCTACAAAA        CCCACACCAGCC CTTA GGCCGG-GCAAG         CGCAGCGCCGCCCGG  62 52
JJN11_RS15875 3266360 .. 3266376 -  -3.6  -3.04398   TCCGTGGGGCAAAAT              GTGCAC TCATT GTGCGC              GAGGCGGCGAGCATA  45 77
        folE NONE
JJN11_RS15865 3264302 .. 3264319 -  -5.6  -3.16564   GCGCGACGTCACGAA             TGGTGA TCATAT TCACCA              CCCTTATTTAGATTG  52 173
        galS 3263191 .. 3263211 - -10.5  -2.89039   AATCACCGTTACATA            GCGTTTCAG TTG CTAAAACGC            TGACATCATAGACAG  71 103
        mglB 3261964 .. 3261982 -   -16  -4.36914   CGTCGCGTGATAAAA             GGGCGCAG AAA CTGCGCCC             AGTGGAATGCTATAA 100 42
        mglA NONE
        mglC 3259347 .. 3259361 -  -8.5  -5.60993   CCGGGCATAAAAAAA               CCCGC ACAAG GCGGG               TTTTTTGCTAACCGA 100 45
        dusC 3255015 .. 3255046 - -18.2  -6.02919   CCAGAAACAAAAAAA      CCTGATTATCCGGC AGAT GCCAGATAATCAGG       TTTTGCCTGCCGCAG 100 129
        bglG 3254081 .. 3254116 - -13.2  -6.20267   GTAAAAATAAAAAAA    CCCGAGAACGACACCC TTTC GGGCGCCGCGCTCAGG     TTTTGCCTGCGTAAC 100 67
        bglF NONE
        ascB 3250723 .. 3250746 - -12.4  -4.13728   TACATACCTGGAAAA          GGCGCCCG GGGCGTGG CGGGCGCC           ATTGCAATCATCAGG  95 36
        mdtQ 3249168 .. 3249191 -  -2.4  -4.46609   AGAAAAGAAGACAAA          GAGATAAGTA TAGT TACTTCTCAC           TTTTCACCCGTGGTG  61 29
JJN11_RS15795 3248046 .. 3248066 -  -5.4  -4.81212   GCCATCAGAAGAAAA            TCAACCGC GCCCA GCAGCTGA            TCCAGCGCCACCCTT  79 328
JJN11_RS15785 3247023 .. 3247058 - -12.6  -3.08867   TTAATCGTGAACAGA    TGCTGCATTGCTGGCA ATTC CGCCAGCAATGCAGTG     ACGTCAGAAGAGACG  83 29
        pbpG 3245702 .. 3245717 -  -6.1  -2.62184   CGTGGCGCCAGATGA              TCGCC GTGGTG GGCGA               CGGGCCAAACAACGC  48 282
        bglX 3240904 .. 3240941 -  -3.3  -3.85748   GGACTGGAAAAAAAT   TGCGGGGCCG-ATCAC GAATCAG GTGAGGCGGCCCCGTC   TGGATATTGCCCGGC  55 56
JJN11_RS15760 NONE
JJN11_RS15755 3237707 .. 3237728 -  -8.7  -3.53012   TGCTTCGTCCTGAAA           GACCGGG GGCCCGGA CCCGGTC            AGGCTGTGAGGATCA  69 38
JJN11_RS15750 NONE
JJN11_RS15745 NONE
JJN11_RS15740 NONE
JJN11_RS15735 NONE
JJN11_RS15730 3232477 .. 3232491 -  -5.8  -3.27525   CCCGCTGAAAGGCAA               TTAATG GTT CATTAA               CACCCGCGCTTCACC  57 162
JJN11_RS15715 3229832 .. 3229846 -  -2.8   -2.8474   CGTCATCGACAATCA               GCACAT TCA ACATGC               GTGTTCCTCCAGAGG  42 17
        btsR NONE
JJN11_RS15705 3228511 .. 3228529 - -14.6  -5.85425   GAAATAAATAAAAAA             GCCGGAGA TAA TCTCCGGC             TTTTTTTATGCCTTT 100 104
        apbC 3225080 .. 3225116 -    -8   -3.9777   GGTAAGATCTACAAA    GCGTATAACGGCGATA TCTTC TACCACCGTTAATCGC    TTAATGCGCCAGGTG  73 103
JJN11_RS15685 NONE
JJN11_RS15680 NONE
JJN11_RS15675 3220116 .. 3220129 -  -2.3  -3.75817   GGGCGAGAAGAAATA               CGCTG AGAT CATCG                ATCACGGTGTCACCA  51 391
JJN11_RS15655 3214660 .. 3214681 -  -6.6  -5.24129   CCCTTTTATAAAAAA           GAAGAGAC CAGAAT GCCTCTTC            TTTTTAAATTAATTT  91 427
JJN11_RS15635 3210352 .. 3210367 -    -6  -5.00616   TGCTGTGTTAAAAAA              GGTCGC GTAA GCGGCC               TTTTGAGACTTTATT  81 36
JJN11_RS15615 3208118 .. 3208130 -  -7.7  -2.92111   TTCGGAAAAAACGCA                CAGGA AGC TCCTG                AAGTGGAAGTAGCTA  59 104
        thiM NONE
        thiD NONE
        fbaB 3202940 .. 3202998 - -14.7  -4.41348   GGCCGGGCAAATAAA GTGCCGCCCGGC-A-TCTGCCCCTCTTCC AAC GGAAGAGGGGCAGAATGGCTAGGCGATAG TGACTTTTTTATCCA 100 15
JJN11_RS15585 NONE
JJN11_RS15580 NONE
JJN11_RS15575 NONE
JJN11_RS15570 NONE
JJN11_RS15565 NONE
JJN11_RS15560 3196055 .. 3196070 -  -3.9  -3.73953   ACTACTCTGACCAAA              GCGGA AGAGAG CCCGC               ATCTTGTGGATGGCG  54 272
JJN11_RS15530 3190367 .. 3190425 -  -8.6  -2.63991   TTCAAGGTAACGAAT CTCGCCGGGC--TG-TACAACTC-GTTATA TTG TACAACAGAATTGTAACACTGCCCGGCGAA GGTTAGCGCACGACT  61 28
JJN11_RS15525 3189549 .. 3189572 -   -11  -3.72788   GGTGATAAGAGAGAA          CGTTACCCGC TGCG GCGGGTAATG           GCATCAGACGGCGTC  81 29
        alkA 3175515 .. 3175529 -  -3.4    -4.258   CCATTGACCAACAAA               GGCACC GGG GTCGCC               CTGCCGCTCTCCATG  64 485
         udk NONE
         dcd NONE
        asmA 3168974 .. 3169011 -  -9.7  -3.35679   GCTGCTGATGGAGAA   CCTGCAGCGAATCCCCC AGCC GGGGGAAGAGGTGCAGG    TGGGTGATTACGCGC  67 169
JJN11_RS15455 NONE
         wzb NONE
         wzc NONE
        wcaA NONE
        wcaB NONE
        wcaC NONE
        wcaD NONE
        wcaE NONE
        wcaF NONE
         gmd NONE
JJN11_RS15405 NONE
JJN11_RS15400 3155423 .. 3155434 -  -7.2  -2.93715   AGAATTTTCATAAAC                CCGG CACT CCGG                 CCTGCTTCAGAAAAT  59 6
        wcaI NONE
        cpsB 3152667 .. 3152693 -  -2.2  -3.08679   CTTTTTCAGGCAACA         GTTGGCCCGC CCGATAT ACAGGCCAAT         TTGATTTTTTTGTTT  42 87
        cpsG NONE
        wcaJ NONE
        wzxC 3148316 .. 3148340 - -12.1  -5.03145   TAACCTCTTAAAAAA          TTCCCCTCCCC AAC GGAGAGGGGGA          GGAAATAATTAACCT 100 34
        wcaK NONE
        wcaL NONE
        wcaM 3144320 .. 3144330 -    -4  -3.07113   GACGATGTTACGCAA                 TTAC AGC GTAA                 ATTTCAGCGGATGCA  47 99
        galF 3143257 .. 3143305 -  -4.9  -5.55855   TTTAAAAAAAGAAAA CGGCAGTG--TCATTCTCATGGC CAATAAC GCC-TG-GAATGATCCACTGCCG TTTAGTCAACGACCA  93 49
        rfbB NONE
        rfbD 3140945 .. 3140960 - -10.4  -4.13014   TCTATATGTGCAAAA              TGCCCG TAAA CGGGCA               TTTAATGTAAGGTCA  85 38
        rfbA NONE
JJN11_RS15335 NONE
JJN11_RS15330 NONE
JJN11_RS15325 NONE
JJN11_RS15320 NONE
JJN11_RS15315 NONE
JJN11_RS15310 3133405 .. 3133417 -  -3.3  -2.97747   TTTGGACATTACATA                CTCCT GTC AGGTG                TGGTCACCGCGTCAT  45 129
        gndA 3131944 .. 3131964 - -16.9  -5.76633   TTACACATAAAAAAA            GCCCGGTGA TGT TCACCGGGC            TTCGCTACATGACTG 100 53
         ugd 3130537 .. 3130556 - -12.1  -5.21236   AAGGTATAAGAAAAA            GCCCGGC GATAAT GCCGGGC             TTTTTTAACTGCTGT 100 42
        wzzB 3128317 .. 3128346 - -16.7  -3.87815   CGCCAGCGGCACAAA       TAAAAAAACCGGG GAAA CCCGGTTTTTTTA        GCTGTTACGCCCTGC 100 30
JJN11_RS15240 NONE
JJN11_RS15235 3119022 .. 3119049 -  -3.5     -6.13   ACATGCAAAAAAAAA        TAACCGACG CCTTTTATAT CGTCGATTA         TTTATATGTTTGCAG 100 110
JJN11_RS15230 3117427 .. 3117447 - -12.5  -5.42514   TGAGAAAGCAAAAAA            GCCGGAGGC GAT GTCTCCGGC            TTTTTTTTGCCCGTC 100 84
        dacD NONE
        sbmC NONE
JJN11_RS15210 NONE
JJN11_RS15205 3112309 .. 3112330 - -13.7  -5.75342   GGCGCCCAAAAAAAA           GCCCCCCGA CAGG TCGGAGGGC            TTTGCTTTTTGGCGG 100 44
JJN11_RS15195 3110469 .. 3110481 -  -3.4  -3.47349   TTGTCAAAGGCAGAA                TGCA GATTT TGCA                TCGTTTGCCGATTTA  50 38
JJN11_RS15190 3110256 .. 3110282 - -18.1  -5.25893   ACAGAGATCAAAAAA         CCCGGCCATCT TACTC AGATGGCCGGG         TTAATCTGGCTTTAA 100 81
JJN11_RS15185 NONE
JJN11_RS15180 3106699 .. 3106736 - -12.1  -4.13654   CGGTTAAAGCACAAA   GACCAGAAACGGTAACC TTCG GGTTACCGTTTTCGGTT    TACCGACCCATTTTC  95 58
        ldtA 3100818 .. 3100855 - -18.7  -3.73775   TTTACCTGCATTAAA   GTAAAAGCCCGCTTAAG GAGA CTTAAGCGGGCTTTTAT    TCTTACGGCCAGGCT 100 40
JJN11_RS15155 3100029 .. 3100045 -  -3.6  -3.36569   TCAACGCCTTAAATA              GCGGCA TGATG TGTCGC              TCCGACACCACCATA  48 2
JJN11_RS15150 NONE
JJN11_RS15145 3096500 .. 3096511 -  -4.4  -3.16785   CATGATATTAAGATA                TGAC AAAC GTCA                 TTGATATGTCAGTGT  48 23
JJN11_RS15140 3095870 .. 3095895 -  -7.5  -3.78234   AGCCAAATTTAAGAA         GCCTGCTTAAG GAAA CTTATGCGGGC          TTTTTGTTTTTGTGC  67 72
         nac NONE
         cbl 3093425 .. 3093450 - -17.7  -3.78234   AGCCAAATTTAAGAA         GCCCGCTTAAG GAAA CTTAAGCGGGC          TTTTTGCTATTTCTC 100 75
JJN11_RS15110 3092216 .. 3092227 -  -4.4  -3.67188   AGCCAGCGTAAAAGA                TCTC TGAC GAGA                 AAACGTGCGGAAAGG  55 57
        drpB NONE
JJN11_RS15085 3086897 .. 3086916 -  -7.2  -3.19202   AAAGAGAGTAACACA            GAAAGCCT TTAC AGACTTTC             CCGGAAACGCTGTAA  60 14
JJN11_RS15080 3085433 .. 3085449 -    -5  -2.52516   GGCTTTATTATGAAC              GTCCGC CATTC GCGGCC              TCAGCCTTGCGTTTC  46 1
JJN11_RS15075 3084485 .. 3084501 -  -3.5  -3.02144   TTATTCTGCTTAACA              GCGGTGG TAA CCTCAGC              GGTAATCCGTGGGGA  43 474
JJN11_RS15065 3082973 .. 3082988 -  -3.2  -3.21912   GCTTCAACCTATTAA              TGTGAG TGCC CTCGCA               TTTTTTCCACAACTT  46 6
JJN11_RS15060 3082680 .. 3082698 - -17.4  -4.93318   TATAACGTACAAAAA             CGCCCGGC AGT GCCGGGCG             TAGCGTGACTTAAGC 100 35
        dsrB 3079209 .. 3079227 - -13.2  -2.66272   TGCCACGTAAACCGA             TCTCTGGC TAT GCCAGAGA             TTTTTCATTTCGGCC  84 70
        fliE 3067117 .. 3067133 -  -5.7  -3.72893   TAGTGTGGCATTAAA              GCCGTCG CGT CGCCAGC              ACCAGAAGGACTAAA  61 36
JJN11_RS14960 3066547 .. 3066574 -  -7.6   -3.7791   TAATGACCGACGAAA        CCGGTACCGGTG TCTT CACCTGCAACGG         CGGCAGCGTCAGCGT  66 113
JJN11_RS14935 3061432 .. 3061451 - -11.4  -5.58179   CAGCACAATAAAAAA            GGCCAGCC CTAA GGCTGACC             TTTGTTGAACAAGGA 100 47
JJN11_RS14930 3057791 .. 3057825 -  -7.2  -3.04196   CTAAATGCAGACAGA     TTGCAGCAAGGATA ATTAAGA TATCCTTGCTGCCG     ATGAGAGAAGTTAAG  59 49
        fliA NONE
        fliZ NONE
        tcyJ 3055417 .. 3055434 - -11.3  -5.68438   CGAGGAAATAAAAAA             GGCGCTT ATCA AAGCGCC              TTTTTTTTCAGTCAA 100 45
        dcyD NONE
        tcyL NONE
        yecC 3052757 .. 3052777 -  -6.3  -3.51708   GATTTCTTAAATTAA            CACATAAAT CTT ATTTATATG            TATAAAATATCGACC  61 170
        sdiA 3051921 .. 3051945 - -14.3  -5.62288   TCAATAAAACAAAAA          CGGCTGAAAGC AGT GCATTCAGCCG          TTTACTCGTCTGCCA 100 59
        uvrY NONE
        uvrC NONE
        pgsA 3048122 .. 3048134 -  -4.1  -3.55203   AAAATTGCGCCGAAA                CGATC ACT GATCA                AGCAAATCCCCACGC  52 16
JJN11_RS14870 NONE
JJN11_RS14865 NONE
JJN11_RS14860 3047615 .. 3047628 -  -8.1  -5.64274   TCAGGCACAAAAAAA               CCACC TTTC GGTGG                TTTCACGACACTGCT 100 70
JJN11_RS14855 3046862 .. 3046877 -  -4.6  -4.58395   GTGATCCTCGAAAAA              TCCGCC TTCG GGCGCA               CCCTCTACCTGATCG  72 427
JJN11_RS14830 NONE
JJN11_RS14825 NONE
JJN11_RS14820 3040441 .. 3040467 - -13.1  -3.91488   AATTGTCTGAAATAA         CGCCTTTCCCT CATCC AGGGAAAGGCA         AAAATACATTAAACA  93 72
JJN11_RS14815 NONE
JJN11_RS14810 3037807 .. 3037818 -  -7.2  -3.75153   CCCGCGCAAGCGAAA                CGCC GCCG GGCG                 CTGTTAATGCAGACA  67 29
JJN11_RS14800 3035946 .. 3035958 -  -4.7  -3.12668   CAGGTTTACATGCAA                CCCGC ACA GCTGG                TGCAGCGCCAGTCCT  50 3
JJN11_RS14795 3035592 .. 3035632 - -12.8  -4.11216   GCTCGATGCCCAAAA TTAATATTCATGCGGCGCC ATCT GGCGCCGCA-AATTATTAA  TGGCGGCAGATTTTA 100 22
JJN11_RS14780 3033582 .. 3033597 - -10.4  -5.65177   AGAGGCATAAAAAAA              GCCAGC GCAA GCTGGC               TTTTTATCGGTGTTA 100 46
        azuC 3031836 .. 3031849 -  -8.1  -5.65177   ACAGGCACAAAAAAA               CCTGC CGGA GCAGG                TTTTTCTTATCAGAA 100 35
JJN11_RS14765 3031362 .. 3031383 - -14.5  -3.17075   TGCGCGTTAACTGAA           TTACCCGGC CTGT GCCGGGTAA            TTTTTTGCAAAAGAG  91 153
JJN11_RS14755 3029475 .. 3029497 -  -2.8  -4.61824   GAATAACAACTAAAA           TGTTTTTAAT CGG ACTTAAAACA           AGGCATTAGCGCCAG  65 268
        araF 3028393 .. 3028426 -  -9.5  -3.10164   GGATCGAGTAGTGAA     CGTCTG-GCCCCCCGA TGC CCGGGGGGCGCAATCA     CAGTGGAATTACTTA  70 34
        araG NONE
        araH 3025758 .. 3025799 -  -2.7   -3.0127   CCATGTAAGTATAGA CAGTGTGACGGGGCTCGCC ATTT GACATCCCCCTTCCCGCTG  CGGCTGGGAAGGGGG  43 83
        otsB NONE
        otsA 3022983 .. 3022998 -  -3.3  -5.41143   TATTGCGCAAAAAAA              GCATT CGCGCT AATGC               TGAAGTATGTGCAAT  81 513
        flhD NONE
        flhC 3021269 .. 3021291 - -14.2  -5.75342   GCGGGGCAAAAAAAA           GCAGCGGTAA TCT CTACCGCTGC           TGGATCCTTGCCCAC 100 50
        motA NONE
        motB NONE
        cheA 3017352 .. 3017367 -  -3.2  -2.78712   TTCTTAACTGAATCA              GGCG GCTGTGTG CGCC               ATACGTTGTTCACGA  43 7
        cheW 3016765 .. 3016789 - -12.9  -4.56969   AACGGGAGAAATAAA          TAAGGGGACCA GCA TGGTCCCCTTG          AAGTGTTGTCCTGGC 100 60
JJN11_RS14690 NONE
JJN11_RS14685 NONE
JJN11_RS14680 NONE
JJN11_RS14675 3012077 .. 3012105 -  -6.6   -3.1829   ACAGCAGCAGTAACA       GCA-GCAGGCGCC TCAT GGTGCCAGCCTGC        AGGTCAGCGGGCCGT  57 9
JJN11_RS14670 3011124 .. 3011139 -  -4.6  -3.20832   TGCGAAAGGGAAAAG              CGCGGT TCAG AACGCG               ACGTCTACCACGAGG  50 16
         tar NONE
         tap NONE
        cheR NONE
JJN11_RS14650 NONE
        cheY NONE
        cheZ 3004603 .. 3004622 -   -10  -4.91987   AATTGAAGAACAAAA            CGCCACCT TTAC AGGTAGCG             TTTTTGCCTGGCGGC 100 148
        flhB NONE
        flhA NONE
        flhe 3000821 .. 3000852 - -13.8  -2.90075   GCCTGTGGAATGACA      CCCCCATTCCGTTC GGGC GAACGGAATGGAGT       CAGAGGGTTAGCGGT  85 33
JJN11_RS14620 NONE
JJN11_RS14615 2999427 .. 2999454 -  -9.2  -2.63631   GTAAGTTTTAGATGA        CTCCCGGTTAACG CGA CGCCAA-CGGGAG        TGACTAGACGGTTAC  63 229
JJN11_RS14610 NONE
JJN11_RS14605 2996598 .. 2996627 - -20.9  -3.65046   CGGTTATCGCAATAA       CACAAAACCCGGC GCAA GCCGGGTTTTGTG        TTTGTAGCCCCGGTA 100 69
JJN11_RS14595 NONE
        cutC 2993174 .. 2993198 -  -6.4  -5.68039   AAATGCATAAAAAAA          GACCCCTG TTGAAATTG CAGGGGCC          TGGTACAAACAAGCA 100 77
JJN11_RS14505 NONE
JJN11_RS14500 2983443 .. 2983462 -  -6.5  -4.82901   TCTTCCCCATAAAAA            CGTACTA CTTCCC TAGTACG             TATGGGGATGAGGTT  80 111
JJN11_RS14495 NONE
JJN11_RS14490 NONE
JJN11_RS14485 2979635 .. 2979650 -  -7.5  -5.65177   ACAGGCATAAAAAAA              CCCGC ACAGAG GCGGG               TTTGATGTCGTGCAG 100 133
JJN11_RS14480 NONE
JJN11_RS14475 2978844 .. 2978856 - -10.5  -2.96298   ATGAGGGGAAAGAAG                GCCGC TGT GCGGC                TGGATGTCACTCTGT  72 73
JJN11_RS14470 NONE
JJN11_RS14465 NONE
JJN11_RS14460 NONE
JJN11_RS14455 NONE
JJN11_RS14450 NONE
JJN11_RS14445 2976748 .. 2976801 -  -3.9  -4.08767   TCCATTGCTTGAAAA TGGTTAAAGCATTATCAAGCCCACC CGCA GATGAGCTTTGGAATGCGTTAACAA TCAGAGTCAGGACGT  60 19
JJN11_RS14440 2976243 .. 2976260 - -12.7  -5.61596   ATGTCCATAAAAAAA             CCCCGCA TATG TGCGGGG              TTTATAGTTAAATTA 100 49
JJN11_RS14435 NONE
JJN11_RS14430 NONE
JJN11_RS14425 NONE
JJN11_RS14420 NONE
JJN11_RS14415 2972889 .. 2972917 -  -3.1  -2.60571   AAGCGCTCAATGAAC        GCTATTACGCG CTCACCT CGCGTCATAGT        TTTTATCCGTGTTTG  41 28
JJN11_RS14410 NONE
JJN11_RS14405 2970130 .. 2970147 -  -9.8  -3.88001   CCCCATAAAAATTAA             GCCCCG TCATTG CGGGGC              TCTTTGTTGGTTCCT  79 4
JJN11_RS14400 NONE
JJN11_RS14395 2968246 .. 2968263 - -14.1  -4.16943   CGCCATACGTTAAAA             GGGCGGG TTAC CCCGCCC              TCCCCCATCATGAGC 100 33
JJN11_RS14390 NONE
JJN11_RS14385 NONE
JJN11_RS14380 NONE
JJN11_RS14375 2966749 .. 2966764 - -10.4  -6.02914   TCCAGATAAAAAAAA              GACCGC CGTA GCGGTC               TGTGAGGGTGAGTGA 100 43
JJN11_RS14370 2966243 .. 2966256 -  -9.5  -5.16237   AAGGGGATTAAAAAA               GCGGC CGAA GCCGC                TCAGGAACCAGACGC 100 26
JJN11_RS14365 NONE
JJN11_RS14360 2965474 .. 2965493 -  -2.2  -2.95097   ATGAATATATAATCA            CTCAT-AGG TTA CCTCATGAA            CATCAAAATTGGCAG  42 47
JJN11_RS14355 2965082 .. 2965093 -  -7.2  -5.96219   GACCTATAAAAAAAA                GCCC CAAA GGGC                 TTTAATTATTTACTG 100 35
JJN11_RS14350 NONE
JJN11_RS14345 2961400 .. 2961415 - -11.8    -5.626   CAGCCCATAAAAAAA              GGCCGC GGAA GCGGCC               CTGGAAAAGGAGGAA 100 44
JJN11_RS14340 NONE
JJN11_RS14335 NONE
JJN11_RS14330 2959268 .. 2959283 - -10.4  -5.64274   TCACCCATAAAAAAA              GCCACC CGGA GGTGGC               CTGTAGCTGAGAATA 100 45
JJN11_RS14320 2954281 .. 2954296 - -10.4   -5.0925   CCTTAAAATGAAAAA              CCCAGC CGGA GCTGGG               TTGGATGGTCTGAGG 100 50
JJN11_RS14315 NONE
JJN11_RS14310 NONE
JJN11_RS14305 2951287 .. 2951299 -  -5.5  -2.71001   GATTTTTAAAGTAAT                GGCAA ATG CTGCC                GATATGTTACTTACC  48 145
JJN11_RS14300 NONE
JJN11_RS14295 2950089 .. 2950100 -    -3  -5.16038   ACATAATAAACAAAA                TTTG AATG CAAA                 TATAAAGAGATCTAT  74 77
JJN11_RS14290 2949102 .. 2949128 -  -2.2  -4.10429   AACCATGCCCCAAAA         CTGGCATTTATG CCC CATACATGCCCC         AAAAACCTTCCTTAA  55 447
        aspS NONE
        nudB 2945827 .. 2945852 -  -2.5  -4.03995   CCTGCCATAAAAATA         TCCTCAAAGAG CGCG CCCTTTCAGGC          GGCGTTAATTACAAA  55 20
JJN11_RS14260 NONE
        ruvC 2944491 .. 2944510 - -12.2  -5.88565   GCCATAATAAAAAAA            GGCTGGAT AAAC ATCCAGCC             TGATTTTTACATTTA 100 38
        ruvA 2943834 .. 2943844 -  -6.8  -3.32844   TCCTTTACCTCACAA                 TGCG GCG CGCA                 GCGCTTCACGAATCA  59 9
        ruvB 2942776 .. 2942787 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG CAGC CGCC                 ATCCGGCAACTTCCG  62 47
        znuA NONE
        mepM 2938772 .. 2938793 - -15.9  -5.54907   CGCACAAAAGAAAAA           GCCGGTGCA GGAG TGCACCGGC            TTTTAACGCTGCTGA 100 42
        lpxM 2937700 .. 2937717 - -12.7   -5.7946   CGGGCAATAAAAAAA             TCCCCCG TTTC CGGGGGA              TTTTTTATTTCTTCG 100 30
         zwf 2933234 .. 2933259 - -21.9  -5.80364   AGTGTAATAAAAAAA         GCCCCGGGTGG AAAT CCACCCGGGGC          TTAAATGATTAAAAA 100 106
         edd NONE
JJN11_RS14195 2930514 .. 2930529 - -11.8   -5.9873   GCAGGATAAAAAAAA              CGGGCC GATT GGCCCG               TTTTTGTATGGCATT 100 109
JJN11_RS14185 2928822 .. 2928839 -  -4.1  -4.38712   TCTATGGCGACAAAA             GAAGCGA AAAT TCACCTC              TTCGACGACTGATAC  65 19
JJN11_RS14180 2928070 .. 2928084 -  -4.2  -3.09635   ATGCGCACGATGCAA               GCGAAA CGG CTCCGC               AAGGCGTAAAAAACT  48 39
        ptrB 2925763 .. 2925798 -  -9.6  -2.78816   GGACGCCGGATGAGA    TGGCCGACATCACCGG ACGC CCGGCGCTGCTGACCA     CCTTTACCTTCGGCA  61 153
        yobA NONE
        copD NONE
JJN11_RS14145 2922483 .. 2922511 -  -8.2  -5.19879   CCTTAAACATAAAAA       CCGCAATGCTTCC GAAG AGAAGC-CTGCGG        TTTTTTTATTGGAAG  95 48
JJN11_RS14090 NONE
JJN11_RS14085 2912318 .. 2912342 -  -3.5  -3.96148   TTTTTGCATCAGAAA         GCCGTTGGTG TTCGCG CACCT-CGGC          TTTCGCCTTTTTAGA  55 49
JJN11_RS14070 NONE
JJN11_RS14065 2909972 .. 2909983 -  -4.4  -3.05384   TTGTTGTTCAGTGAA                TCAC TCAT GTGA                 TGCTCCTCGGTGCGT  47 14
JJN11_RS14060 NONE
JJN11_RS14055 2909161 .. 2909173 -  -9.1  -3.33661   TATCGAACCAGAACA                TGCGG GAG CCGCA                GCACATATCCAAAAT  69 56
JJN11_RS14045 2907935 .. 2907950 - -10.4  -5.12068   GACACCCAAGAAAAA              GGCCTC CGAA GAGGCC               CTGACTGTCGATATG 100 314
JJN11_RS14040 NONE
JJN11_RS14035 NONE
JJN11_RS14030 NONE
JJN11_RS14025 NONE
JJN11_RS14020 NONE
JJN11_RS14015 2904615 .. 2904630 -  -8.2  -5.64873   CTTAATAATAAAAAA              CCCCGC CGTA GCGAGG               TTCAGAATTTTTAAC 100 136
JJN11_RS14010 NONE
JJN11_RS14005 2903155 .. 2903174 - -12.2  -5.71712   GCGCATATAAAAAAA            GCCTGCTT TTGC AAGCAGGC             AATACTAAACCCAGG 100 237
JJN11_RS14000 NONE
JJN11_RS13995 NONE
JJN11_RS13990 NONE
JJN11_RS13985 2901539 .. 2901567 -  -6.2  -3.59495   GCAAAAAAAGCAACA        GAAAAGATAAAA GATCA TTTTCTCTTTTC        CTCATTTTTTTGCTG  59 11
JJN11_RS13970 2900119 .. 2900129 -  -3.2  -3.19389   TAATTCATCCACCAA                 GAAC CTC GCTC                 TGCTGCTTCTGCGCT  46 4
JJN11_RS13965 NONE
JJN11_RS13960 NONE
JJN11_RS13955 NONE
JJN11_RS13950 2895792 .. 2895807 - -10.4  -5.64274   GCAGGCATAAAAAAA              GCTGCC CGGA GGCAGC               CTGTTAGATAAATTC 100 29
JJN11_RS13945 NONE
JJN11_RS13940 2893775 .. 2893796 - -10.1  -4.56597   TGGGCCTCCTAAAAA           CAAAGGGGC CGAA GCCCCTGTG            GGTTAACCCATGATG 100 28
JJN11_RS13935 NONE
JJN11_RS13930 NONE
JJN11_RS13925 NONE
JJN11_RS13920 NONE
JJN11_RS13915 2891497 .. 2891512 -  -8.2   -5.8187   GAGGTAATAAAAAAA              CCCACC AGGC GGCGGG               TCAGTAATCAGCGCG 100 26
JJN11_RS13910 2890509 .. 2890524 - -11.8  -5.00616   TGGGGCCGTAAAAAA              GCCCGG CGAA CCGGGC               CAGAATGGTTAGCTG 100 34
JJN11_RS13905 2890114 .. 2890134 -  -2.4  -2.57132   CCGGGCGTGTACAAC            GCTGCGGC GACCT GCCTCAGT            TTTTTTCTCGTACAC  39 21
JJN11_RS13900 NONE
JJN11_RS13895 2886568 .. 2886620 -  -9.4  -2.71483   ATATTTTTTTAAGCA CTAT-CATCCCCTGATTAGTATGTT TTTA AACATGATAACCAGGGGATGCATTG CTGTAACCAGGCGCG  63 75
JJN11_RS13890 2885747 .. 2885769 -    -2  -3.85237   AACAAATGAAAAAAG           TACTAGCACT GTT ACTGGTAGTA           GCATTCGGCTTGATG  52 438
JJN11_RS13880 NONE
JJN11_RS13875 NONE
JJN11_RS13870 NONE
JJN11_RS13865 2882602 .. 2882617 - -10.4  -5.64274   GCATCCATAAAAAAA              GCACCC GATT GGGTGC               TAATTGAAGAGTAAG 100 47
JJN11_RS13860 2877550 .. 2877565 - -10.4  -5.79595   CCTTAAAATAAAAAA              CCCAGC CGGA GCTGGG               TTATAAGGGTGGGAT 100 46
JJN11_RS13855 2875869 .. 2875883 -  -8.6  -2.72344   CTCCACGCTGAATTA               TCAGAC ACC GTCTGA               ATTTGCAGCGGGCTG  58 96
JJN11_RS13845 NONE
JJN11_RS13840 NONE
JJN11_RS13835 NONE
JJN11_RS13830 2872530 .. 2872542 -  -4.8   -4.9725   ATGCTCAGATAAAAA                CAGG CGGGC CCTG                ATTTGAGGGTCCGCT  77 121
        pphA 2867272 .. 2867287 - -11.8  -3.84185   CTGATTCAAAGAGAA              CCCGCC CGCA GGCGGG               TTATTTATTCTCATA  88 295
JJN11_RS13780 2860837 .. 2860856 - -12.2   -3.1552   CCGCAGGCATGAACA            GGCGTCAT TATA ATGACGCC             ATCCGTAAATGCTAC  82 53
        proQ NONE
         prc 2858003 .. 2858024 - -13.1   -5.7946   CGGTTAACAAAAAAA           CAGGCACAA TTTC TTGTGCCTG            TCAGGGGAGATTATT 100 36
        htpX 2856916 .. 2856933 - -12.7  -5.65177   ACAGCCATAAAAAAA             GCGCGTC TTTG GACGCGC              TTTTTTATTAGCAAA 100 50
        kdgR 2854529 .. 2854546 -  -8.3  -5.60993   CCTTGCATAAAAAAA             CGCCGCC ATAA GGCCGCG              TTTTTTTATCGCGCT 100 46
        mgrB NONE
JJN11_RS13740 2853277 .. 2853293 - -10.8  -2.84325   GTCCGGCAAACAGCA              CCGGCG AGGCG CGCCGG              GAAAAGACCGGATCG  74 338
        cspE 2851632 .. 2851649 - -10.5  -4.76644   AATATCCATTAAAAA             GCCCCGC ACAG GCGAGGC              TTTATATCTCTGCAA 100 80
        ftsI 2849725 .. 2849750 -  -3.9  -4.05446   CCGGGCAATCATAAA         GGGCGA-AAGTG TAC CGCTAATCGCCC         TGCTATAAAACGGCC  60 41
        rlmA 2848816 .. 2848835 -   -10  -3.64703   CCGCTGTTAGGGAAA            CGCGCCGAG ATC CTCGGCG-G            TATCGTCTTGATCGG  75 77
        yoaE 2842542 .. 2842577 -  -6.1  -3.55622   CTGAAGGGGTGGAAA   CCCGCGACCAGGCG-AG CCAT CTGCGCCTGCACG-GGG    TGGATATCCTTCAGG  58 151
JJN11_RS13660 2837040 .. 2837053 -  -2.3  -3.92373   CAGGGCAGCGACAAA               TCCCG CATT CTGGA                TGCGACCATTTTCCT  53 191
JJN11_RS13650 2834832 .. 2834854 -  -8.4  -3.80014   ACACCCACCAGCAAA           TTACTGCGTC TGC GACGCGGCAA           GGAAACGCACGGCGC  73 3
        tsaB NONE
JJN11_RS13640 2833403 .. 2833419 -  -9.4  -5.55855   TGGAAAAAAACAAAA              CAGCGG ACGGG CCGCTG              TTTCTTAATTAAGAA 100 51
        fadD 2831514 .. 2831530 - -13.7  -5.60993   GCGCCCATAAAAAAA              CGCTGGC CAG GCCAGCG              TTTCTGGGTGACTAA 100 49
         rnd 2830044 .. 2830091 -  -2.7  -3.93658   AACATCGCTAAAGAA CGACTTCAG-ATCATCGTGGCGG AACG CCGCCGCAGCGACGCTGAA-CCG CACTATCTGCCGCAG  53 286
JJN11_RS13610 2828019 .. 2828029 -    -4  -2.73619   AATGAGCCCCTAAAG                 GTTA ATG TAAC                 GCTGACAGATTAATC  44 46
JJN11_RS13605 NONE
JJN11_RS13600 2826786 .. 2826799 -  -9.5  -5.21709   CCGCACATTAAAAAA               CCCGC CTTG GCGGG                TTTTTTATTATCAGC 100 36
        fadR 2823553 .. 2823568 -    -9  -5.41143   CACCCGGCAAAAAAA              CCTCTC AGAT GAGAGG               TTTTTTATTTTATCG 100 35
JJN11_RS13575 NONE
        dadX 2819002 .. 2819016 -  -4.9  -3.30771   CGAGATCGTGCAGAA               GCAGC TCGGT GCCGC               GCCGGTCGTGGGTGA  49 222
        emtA 2815615 .. 2815667 -  -3.5   -4.1673   GAACGTGCCAATAAA GTGCGTTAATC-GCCACCGGGCAGC GCGTG GCTGCCCGGCAACAGATTA-CATAG CGTCCATCGCTTTCT  60 18
JJN11_RS13545 2814400 .. 2814418 - -13.2  -5.60993   CTGCCCATAAAAAAA             CGGCTCTT AAC AAGAGCCG             TTTTATCGGTTTCAG 100 37
JJN11_RS13535 NONE
JJN11_RS13530 2809381 .. 2809404 -  -9.6  -2.53015   AGATGTGGCAAGCCA          GCCAGACC GTGCCGGA GGTCTGGC           TGGGAGACGATCAGA  66 36
JJN11_RS13525 NONE
JJN11_RS13520 2807598 .. 2807609 -    -3  -3.02461   TAATTTGCTCTAATA                GTAT ACAA ATAC                 CTGTTCAAATATCCA  43 95
JJN11_RS13515 2806807 .. 2806819 -  -9.1  -2.93492   CAGGAGAGATTAAAG                CCAGC TCT GCTGG                ACAGGGGCGCCTTCG  66 7
JJN11_RS13495 2802942 .. 2802968 - -18.1  -5.37593   GCGGAAATGAAAAAA         GAGCCGCTCTG GTCAT CAGAGCGGCTC         TTTTATAATATTATA 100 106
JJN11_RS13490 2801505 .. 2801519 -  -4.2  -2.78032   TTCCTCCCAAAAGAG               TGTGCG GCC CGCAGA               GAGACGAGTGCTGCC  45 95
JJN11_RS13485 2800370 .. 2800383 -  -3.7  -3.10925   AAAATTACAAATAAC               CCGGC AGAG GCTGG                CCACCGAAATAGACC  46 1
JJN11_RS13480 NONE
JJN11_RS13475 NONE
JJN11_RS13470 NONE
JJN11_RS13465 NONE
JJN11_RS13460 NONE
JJN11_RS13455 NONE
JJN11_RS13450 NONE
JJN11_RS13445 NONE
JJN11_RS13440 NONE
JJN11_RS13435 NONE
        pcaD NONE
JJN11_RS13425 NONE
        catC NONE
        catA 2789554 .. 2789576 - -14.1  -4.87133   AGTGGTCAAATAAAA           CGGGCCCGC TCACC GCGGACCCG           GCCCTATCAACCTCT 100 47
JJN11_RS13405 2786584 .. 2786596 -  -4.1  -2.66326   TTAAGCCGAAAGGTA                CAATG AAT CATCG                GTCGTTCCACGCATC  44 20
JJN11_RS13400 NONE
JJN11_RS13395 2785844 .. 2785862 - -11.7  -3.48276   CGTCTGGGCACATAA             CCCGGTC AGTAA GACCGGG             TTTGTGCTGGTTATA  83 36
JJN11_RS13385 NONE
JJN11_RS13380 2783856 .. 2783866 -  -2.4  -3.77806   CGCTATAGTAAAATA                 CTGC TTA GCCG                 TGAAATTTATTCAGG  50 59
JJN11_RS13375 NONE
JJN11_RS13370 2782695 .. 2782711 - -10.1   -3.1372   TAGCTTCCAGCAACA              GGCCCAA CAA TCGGGCC              TTATTTTTTGCAGAT  73 40
JJN11_RS13355 2781081 .. 2781097 -  -4.3  -3.88291   GATTATCTCGATAAA              GAGAGCG GTA CGCCGTC              GTACAAATCAGTGCC  57 174
JJN11_RS13345 2777157 .. 2777194 -    -7   -4.2679   TAACCCCCAGTAAAA   GAGCC-GCGATCCCG TCTGACCTG CGGGATCGCTGACAC   CTCTTTCACCTGCCC  73 31
        ftrA 2775611 .. 2775628 - -11.3  -5.05782   ACTGACCTGAAAAAA             TCCACGC CATG GCGTGGA              TTTTTTTATCAAAGG 100 82
        ychH 2773178 .. 2773195 -  -7.7  -6.17292   AAAGGCAAAAAAAAA             CGGCTTC CGAA GAAACCG              CTTTTCGCGCTGTCA 100 45
JJN11_RS13315 2771560 .. 2771596 -  -9.3  -2.75992   TGGCATGGAACATGA    GCGAGGCGCATAAAGTC ATC AACCTGCTGCGCCGCGC    CCCCAAAGACGACAT  61 483
        hemA NONE
        prfA NONE
        prmC NONE
       sirB2 NONE
       sirB1 NONE
        kdsA 2762176 .. 2762189 -  -9.5  -5.63504   AAGCGCATAAAAAAA               CCCGC CGAA GCGGG                TTTTTTTATTAGTTG 100 34
        chaB 2760437 .. 2760448 -  -2.2  -4.08767   CCGACCGCCTTAAAA                GTCA AAGC CGAC                 GGTGCAAACTATTAA  55 62
JJN11_RS13250 2759133 .. 2759143 -  -6.8  -3.56594   TGAAAGCCGCGTAAA                 GCGA TGT TCGC                 TGCGCGCTTTCAGGC  61 479
        nasR 2755419 .. 2755450 - -15.8  -5.82388   AAATGGCAAAAAAAA      GCGCCCGGCAGTGC CGAA GCACCGCAGGACGC       CTTTATCCTCAAAAA 100 193
JJN11_RS13225 NONE
        ntrB NONE
JJN11_RS13215 NONE
        nirB NONE
JJN11_RS13205 2745861 .. 2745877 -  -9.5  -2.85056   AGCCCTAAGGGAAAT              TTCAGGA ATA TCCTGAA              GCCTGATTGCCGGGT  68 103
JJN11_RS13200 2743949 .. 2743961 -  -4.7  -3.33922   AGCTGCGCGAAAAAT                CGCTC TCC GGGCG                CGTGGTGGTCTTCAG  51 434
JJN11_RS13185 2740189 .. 2740207 - -13.1  -5.44119   TGCAGGCTAAAAAAA             GCGCGGC ACCAG GCCGCGC             AAACGGATAATCAAA 100 42
JJN11_RS13180 NONE
        narH NONE
        narJ NONE
        narI 2733151 .. 2733166 - -11.8  -5.75342   TGGGGCGAAAAAAAA              CCCCGC CAGA GCGGGG               TTGAGATGAAAACGG 100 45
JJN11_RS13155 2731402 .. 2731418 - -12.3    -3.551   GCGCAAGCGAGACAA              CGTTGCC AGA GGCAACG              GCCCGGAGGGTGAGG  77 349
        rssA NONE
        rssB 2727519 .. 2727543 -  -2.7  -5.20606   AAATACGAATAAAAA          CAGGCACCGAT AGT AGCATTGCCCG          TAAAACGACGGTAAA  77 68
        galU 2726427 .. 2726450 -  -9.6  -5.63504   AAGGTTATAAAAAAA          CCGGCG-TAGC ATA GCTATCACCGG          TTTTGCTTAGGGCGT 100 51
         tdk 2724633 .. 2724646 -  -9.5   -5.4505   TCGCTCAATAAAAAA               CCCGC TCCG GCGGG                TTTTTTTATGTCTCT 100 76
JJN11_RS13095 2720776 .. 2720794 -   -16  -5.73339   ATAATGACAAAAAAA             GCGGAGCC CAG GGCTCCGC             TTTTTCATTTGAAGG 100 42
        oppA 2718371 .. 2718399 -  -8.7  -2.96692   TACGATGAGTAGACA        CCGTGGGGCAGAC AGC GCCCGCCCCACTC        ATTGCCATTAATGCT  63 33
        oppB NONE
        oppC NONE
JJN11_RS13075 NONE
        oppF 2714414 .. 2714429 - -10.4   -5.7946   GCGCGAATAAAAAAA              GGCTGC GATT GCAGCC               TTTTTTATTGCCTTT 100 48
JJN11_RS13055 2712236 .. 2712262 -  -4.4   -5.4833   GTAGCGAATAAAAAA        CATCGGGCACC TCTGTG GGTGCCCT-TG         TGTCATTCAGTAATC  83 32
        leuE 2711541 .. 2711558 -  -8.4  -5.67063   TCTAGGATAAAAAAA             GGCTCC GTACCA GGAGCC              TTTTCTTATTAGTTC 100 34
        tonB 2710255 .. 2710272 - -12.7  -5.64274   GCAGGCATAAAAAAA             GCCTCCC GATT GGGAGGC              TTTTTTCATTATTCC 100 34
        ompW 2707412 .. 2707425 -  -9.5  -5.95539   GCGTAAATAAAAAAA               GGCCC CTCG GGGCC                TTCTTATTTTCAGAA 100 35
         rnm NONE
JJN11_RS12965 2696647 .. 2696673 - -12.2  -2.98778   CCATAACGCAAACCA         GTCCGACTTGCC AAA GGCACGTCGGCC         AAAAAATCTATTAGC  81 471
JJN11_RS12955 NONE
JJN11_RS12950 2695629 .. 2695642 -  -6.7  -3.93369   GTAACCTGAAGCAAA               CCCAA CGAT TTGGG                CAGGCAGATTTCTCA  66 74
        rluB 2694489 .. 2694517 - -16.9  -3.22298   GGCATCGACTATTAA        CAAAAAACCCGGC CAG GCCGGGTTTTTTA        TTTTTTAGCCGTTGT 100 30
        sohB 2691817 .. 2691836 -   -15  -4.67353   TGATTGATGCAAAAA            CGCGAGGC ACTG GCCTCGCG             TTTTTATTCACAGTA 100 33
        topA 2688520 .. 2688537 - -14.1   -5.4505   CCCGGTAATAAAAAA             GGGCCGG AATA CCGGCCC              TTGCGAGGTAACTTA 100 54
        cysB 2687370 .. 2687397 -   -15  -4.21773   TCTTAAGAGAAATAA        CGGTATCTCTCC CGAA GGAAAGATACCG         GAGGGTATTATTTTT 100 33
JJN11_RS12910 2686799 .. 2686813 -  -4.2  -3.99955   AAGAGATCAATGAAA               GCTTGT TGT ACAGGC               GATAGCTTCCAGGAT  60 141
JJN11_RS12905 2686502 .. 2686519 - -10.5   -5.3236   AGAAGGCATAAAAAA             GCCCCGC GGGC GCGAGGC              TTTCATCATTCACTG 100 35
        acnA 2683654 .. 2683684 - -11.1  -4.99435   CTTAATAAGTAAAAA       CAACAGCCCGGCA ATTTA TGCCGGGCTGATT       TTCCTTTAGTTCAGC 100 31
        pgpB NONE
JJN11_RS12885 NONE
        lapB 2680465 .. 2680480 -  -2.4  -3.23708   CCTTTTTAAAAATTA              CTGCCC ATCG AGGCCG               CGAATTGGCTTAATG  43 7
        pyrF NONE
        yciH 2679173 .. 2679203 - -15.6  -5.46706   ATCTCAAAATAAAAA       CAATAAGCCACGGT CTG ACCGTGGCTTATTT       GTTTTGGCGGTACGT 100 40
JJN11_RS12850 2676440 .. 2676466 - -10.9  -3.93256   GAGAGTGCGAAAGAA         GACGCCTTTCT GACGA AGAACGGCGTC         AATGAACGACAGGGA  81 115
        pspA NONE
        pspB NONE
        pspC 2662339 .. 2662365 -  -2.4  -2.64616   CGTTGATTCATATCA        GTTCTC-TCAG TTAAAG CTGACGAAAAC         GGCTTCGCAGCGTGA  39 9
        pspD 2662082 .. 2662113 -   -16  -2.56514   AAGGAATAAAAGCAG      CGCAACGGCACA TTGAACTT TGTGCCGTTGCG       AATTATTTCAGTTTA 100 28
JJN11_RS12775 NONE
JJN11_RS12770 2659497 .. 2659522 -  -8.3  -3.06261   CTGCAATCGGGAAGA         CGGCTGTCAAC AAAT ATTGACAGCCT          GTGAGCAGGGTGTCG  63 64
        tyrR 2657865 .. 2657880 - -10.4   -4.4634   AAGCGTAACAATAAA              GCCTCC CTGC GGAGGC               TTTTTTATTTTTACT  90 36
        ycjG 2655976 .. 2655988 -  -3.3  -3.95073   GTTCAGAGCCAGAAA                CCCAG GCG CTGTG                TCATCTGATCCACAA  58 305
JJN11_RS12745 2653692 .. 2653713 -  -8.7  -3.91072   GTAAAGGGGGAGAAA           CTGGCGC TGCAAGTC GCGCCAG            CTCTGGGTTTAGCGA  73 75
JJN11_RS12740 2653410 .. 2653421 -  -2.2  -4.82901   TCCTGGTGACAAAAA                CAGC CAAC GCTA                 CAGATAAAAAATGAC  67 42
JJN11_RS12730 2651533 .. 2651552 -  -7.1   -5.1287   GTGAGAGCGAAAAAA            TGGCGCC TCAATC AGCGCCA             TTTACAAGGTGGGCA  88 219
        tssB NONE
        tssC NONE
        tssK NONE
        tssL NONE
JJN11_RS12705 NONE
         hcp 2644903 .. 2644922 - -13.6  -5.53991   TACTCAGCAAAAAAA            GCAGACGG AGAA CCGTCTGC             TCAGGAAATCAGGCA 100 34
        tssH NONE
JJN11_RS12690 NONE
JJN11_RS12685 NONE
        vgrG NONE
JJN11_RS12675 2636237 .. 2636260 -  -5.2  -2.72799   TTTTCACAGATATCA          TTCCTCAGGC CAGT GCCTGATGAT           CAGAGAGCGGGCCAA  48 6
JJN11_RS12670 2635062 .. 2635085 -  -5.2  -2.72799   TTTTCACAGATATCA          TTCCTCAGGC CAGT GCCTGATGAT           CAGAGAGCGGGCCAG  48 197
JJN11_RS12665 2633957 .. 2633971 -  -7.1  -2.72829   GAGAGTGGGCCAAAT               TCCCC CATCC GGGGA               TATAACGGGTTAGTA  56 139
JJN11_RS12660 2632783 .. 2632797 -  -7.1  -2.72829   GAGAGTGGGCCAAAT               TCCCC CATCC GGGGA               TATAACGGGTTAGTG  56 167
JJN11_RS12655 2631706 .. 2631727 -  -4.3  -2.52834   GACTTGATCACGAAT           GCGGGACTT AATG ATGTCCAGC            TCATCATCACGGTTC  44 60
JJN11_RS12650 2630436 .. 2630450 -  -2.1  -2.64933   TATTGACTCAGATCA               CAGCT CGCGC AACTG               ATTAATAAACCAGAA  39 162
JJN11_RS12645 NONE
JJN11_RS12640 NONE
JJN11_RS12635 2625221 .. 2625235 -  -3.4  -2.58427   AAGATGCTCCAGAAT               CGGGCC GGT GACCTG               GCTGGAAATATCCTG  42 51
JJN11_RS12630 NONE
JJN11_RS12625 NONE
JJN11_RS12620 2623064 .. 2623110 -  -4.5  -2.76815   AGTTGCGTTAACAAC GCTGCGATCGCTTACTGCTCAT AATA AAGAGCAGTAAGTGAT-GCATT TGTTTTGGATAAAAA  47 118
JJN11_RS12615 NONE
JJN11_RS12610 2621454 .. 2621469 -  -6.1  -2.52834   TATTGCAGCAGTAAG              CGGCT AAAGAG AGCCG               TGACAGGCTGGTGGT  50 88
JJN11_RS12595 2617916 .. 2617931 - -10.4  -4.00782   GGACACGATGAGAAA              GCCTGG CGAA CCAGGC               TTATTATCAGGCTCG  85 32
        zntB 2616591 .. 2616610 - -12.2  -5.81412   TGCAGGCAAAAAAAA            GCCGACTT ATTT AAGTCGGC             GTCGTACGAATCAAT 100 215
        dbpA 2614612 .. 2614625 -  -3.8  -3.70902   CGGCTCACAGCCAAA               CCTG CAGCGT CAGG                TGATTGCCGACATGT  54 339
JJN11_RS12575 2613593 .. 2613614 - -14.5  -5.26918   AGAGGCGATAAAAAA           GCCACCAGT AAAT ACTGGTGGC            GCGGGTATTACTCAC 100 47
JJN11_RS12570 2612831 .. 2612855 -  -6.4  -2.70932   TCCTTGCGTTAACCA          TGCCCTCACA GGCGG CGTGACGGCA          CGCCGCGCCCTGGCT  53 62
JJN11_RS12565 2612326 .. 2612345 - -12.1  -2.96695   GTTCTGATGAAATGA            GCCCGCG TTACGG CGCGGGC             TACCTGAGACAAGAT  81 66
JJN11_RS12550 2606452 .. 2606462 -  -8.2  -3.32769   GCTGCAAAGCATCAA                 CGGC GCC GCCG                 TCGCCCCGGTCACCA  61 307
JJN11_RS12535 NONE
JJN11_RS12530 2601738 .. 2601756 -  -7.4  -3.28791   ATGGCGGCCTCAGAA             GAGATCGC TGC GCGATTTC             AGCAGCGATTCCACA  62 1
JJN11_RS12525 2600977 .. 2600989 -  -6.3  -3.25719   GCAGGAGAGCATGAA                CAATC CGC GATTG                AGTGAAACCGAGAGC  54 440
JJN11_RS12515 2598411 .. 2598436 -  -3.9  -5.02074   CTACCGGGCAAAAAA         TGCAGGACGAA ATCG CTGGTCCTGCT          AAGGGTGCGGTTTTG  77 348
        paaA NONE
        paaB NONE
        paaC NONE
        paaJ NONE
        paaK NONE
JJN11_RS12465 NONE
        paaG NONE
        paaC NONE
        paaI NONE
        pcaF NONE
        paaF 2580687 .. 2580715 -  -9.6  -3.66256   CATAGCGCTAAAAGA        GCGACCCTCC CTAATACGC AGAGGGTCGC        GGACGGCCTTAGCTG  76 34
        paaX NONE
        paaY 2578990 .. 2579013 -   -11  -4.59993   AAACGCAGAAACAAA          GCCCCAGCGAC AGC GT-GCCGGGGC          TTTTAGGGTGCCACT 100 108
JJN11_RS12380 NONE
JJN11_RS12375 2564313 .. 2564324 -  -2.2  -2.71712   TCTCGCCCCCTAAAG                CGGT AAGA ACCA                 GATAAGGCTAACCGT  39 8
JJN11_RS12370 NONE
JJN11_RS12365 NONE
JJN11_RS12360 2562252 .. 2562262 -  -2.4  -4.47271   CAAAGTTAACGAAAA                 CGCC AAA GCCG                 CTATAGCCAGCCCGG  64 97
JJN11_RS12345 2559643 .. 2559680 - -15.5   -2.7644   ATCCAACGCTGAAAT   CTCGCCGGGGAGTGGTG CACG CATCACTCCCCGGCGCT    TTTATGTCTCCTGCA  95 27
        hrpA 2554830 .. 2554857 - -13.4  -4.43877   GAACGGTTAAAGAAA        TGCCCGGT-GGCG CTA CGCCTACCGGGCC        TACAACAACTTCATG 100 84
JJN11_RS12305 2547208 .. 2547245 - -17.2  -3.09273   TTCCGGCAACAGAGA   GTTGCCCGTTTGCG TCAAACTCAT CGCAAACGGGCAAC    GCGTTACAGCAGCGC 100 29
        aldA 2545539 .. 2545559 -  -3.2  -3.67737   TACAAAACCGGCAAA           CGGCAT-CG GACA CGTAGGCCG            GGTAAGGCGAAGCCG  53 76
        cybB NONE
JJN11_RS12280 2541026 .. 2541046 - -10.4  -2.78679   GTGGCGGACGCAAAC            CCGCAGCG TAATC CGCTGCGA            TATATCTTCCGCTAA  71 433
JJN11_RS12265 2539307 .. 2539337 -    -9  -3.29704   GGCTGATGAAAGATA      CAGAGGGTGCGGG CACGCT CCCGCTCC-TCTG       CCATCAGTTCGGTGA  69 91
JJN11_RS12260 NONE
JJN11_RS12250 2536969 .. 2536979 -  -2.4  -3.91911   TTTATGGCAATTAAA                 CGAC ACG GGCG                 TCCTGAGGAAGTGGC  53 205
JJN11_RS12240 2535192 .. 2535205 -  -3.7   -3.7282   TCATCTGATTAACAA               CGCCG GTCA CGGTG                AGTTTGCCACCCTTA  54 519
JJN11_RS12230 2533679 .. 2533690 -  -5.8  -4.08394   AGACCTTCGCGAAAA                GCGT ATTC ACGC                 TGCCCGCCTTACAGG  64 212
JJN11_RS12220 2531821 .. 2531843 -  -9.1  -3.28712   TCTGTTGCGCCACAA           GCGCCGG GCGCAGGAT CCGGCGC           TGAACTGGCTGGTGG  63 69
JJN11_RS12210 2529528 .. 2529541 -  -5.2  -3.31144   CGGTGAGGGCGATAA               CCGC TGGTCG GCGG                CGCACGTCAGCGATG  51 493
JJN11_RS12195 2528007 .. 2528023 -    -8  -3.34398   CGCGGCGGTTAAACA              TGTCGG GCTCG CCGACA              CCGGTTAATCACAGA  64 30
JJN11_RS12185 NONE
JJN11_RS12180 NONE
JJN11_RS12175 2525177 .. 2525190 -  -3.1  -3.85891   GAAAAATTGACTAAA               CA-GGC ACT GCCATG               TCAGTCATTCACGGA  54 30
JJN11_RS12170 NONE
        dsbG 2522192 .. 2522213 -  -9.5  -3.39327   TGTTCACATCGACAA           GCGCAAACA TGAT TATTTGCGC            CCTTTAACGGGCGCA  73 182
JJN11_RS12160 2520512 .. 2520535 -  -5.2  -4.48997   TAATCAATAAAATAA          GCGAGCCGTA AAAA TAAAGCCCGC           TATTTTTCAGAAATA  73 429
JJN11_RS12150 2518414 .. 2518427 -  -2.3  -4.65916   CCGACTGGAAGAAAA               CGCTG GGTT CAGAG                TGGCGCCAGTACGAA  66 434
        ycgZ 2514752 .. 2514766 -  -4.2  -3.06796   TCTCACGCGACTGAA               CGTAGC CGG GCTACC               TCTCATCGCTATCAA  47 124
JJN11_RS12120 NONE
JJN11_RS12115 NONE
JJN11_RS12110 NONE
JJN11_RS12105 2512347 .. 2512362 -  -4.6  -3.12327   CTCTCATAGGTAAGA              TGCGTG GAAA CACGCC               TGTAAAGTAGTCATC  50 159
JJN11_RS12100 2510516 .. 2510539 -   -14   -5.7946   CGGGGAATAAAAAAA          GGGTTCATGT CGAA ACATGAACCC           TTTTTTGCCCGGCGG 100 115
JJN11_RS12095 2509810 .. 2509835 - -11.1   -3.6135   AAAGAGATCTGGAAA         GACCGCCTGCC GGTG GGCAGCCAGTC          CGGGCCGATGACCTA  74 202
JJN11_RS12060 NONE
JJN11_RS12055 2497877 .. 2497895 -  -5.9  -3.85698   CTGTGGCTGGAGAAA             CAGGCCG TACAG CCGCCTG             CCATGCACAAAAATC  61 254
JJN11_RS12045 NONE
JJN11_RS12040 2495188 .. 2495215 -   -12  -5.03314   GTTATGTTTAAAAAA        GCCCCCGACG GACATCAT CGTCGGAGGC         TTAGCGTAAGATGAT 100 40
JJN11_RS12035 NONE
        rimL 2492411 .. 2492427 -    -8  -4.08216   CCAGGTGGCGGAAAA              TGCCCT GGTTG AGGGCA              ACTGCGTGATTAAAC  71 274
        tehA NONE
        tehB 2489604 .. 2489624 -  -6.1  -3.65902   TCGAGGCGATGGAAA            GTTTAGGCA TCA CGCCAAAAC            CGACCCCAATGCGCG  61 382
JJN11_RS12005 2486828 .. 2486853 -  -2.5  -5.24449   CACAAATTGAAAAAA         GAGTGCCCGTAA CGA TAACGGGCAG-C         ATTAAATGATTATTT  76 35
JJN11_RS12000 2486021 .. 2486043 - -20.6  -4.64334   AACGGCGTAACAAAA           CCGGCCTGCC CGC GGCAGGCCGG           CCTGATATTATTGGG 100 33
JJN11_RS11990 2483619 .. 2483638 -  -4.8  -3.78775   TTCGCCACGATGAAA            GCCTCTGG CTAT CCGGTGGC             CGTCTCGCCGCTCAT  56 447
JJN11_RS11980 NONE
JJN11_RS11975 2480122 .. 2480144 -  -7.6  -3.61398   TTTTTGGGTGAAGAA           CGTCGAGCAG CAG CTGCGCCACG           AGGCGGATAGCGATG  62 133
JJN11_RS11945 2474948 .. 2474976 -  -5.3  -2.59177   AGGTGAGAGAGGAAT       GTCAG-CAGGCG TGACGG CGCCTGACTGAA        TTACTTGCGCAGCTC  48 26
JJN11_RS11940 2473369 .. 2473389 - -12.6  -5.56673   AGCGATAATAAAAAA            CGCCGCAA ATTAA TTGCGGCG            TGATTAAGGGGATAA 100 82
JJN11_RS11935 2472016 .. 2472031 -  -3.9  -2.70932   CCCTGCGCTTAACGA              CCGCC CATGAT GGCGA               TATAGTCCTGAACCC  44 3
JJN11_RS11930 NONE
JJN11_RS11925 NONE
JJN11_RS11920 NONE
        patD 2467746 .. 2467781 -  -3.8  -2.89379   GAATAAAATATATTA    TTGCGCGCCGGTTACC GTGC AGTAACCGGCGCTGGG     CACAGATCAGTGCTT  45 32
JJN11_RS11910 2466073 .. 2466093 -  -7.6  -3.36341   AAGATCTGGTAAACA           CCGTG-CGT GCCT ACGACACGG            AAAACGAGCACGAGG  61 74
JJN11_RS11890 2464557 .. 2464608 -  -2.5  -3.30903   AAAAGCTGTTCATAA GCACTCCTTTTCAGACGA-CTGTGT TTTT ATACAGCTCATC-AAAGAGGAATGC TATCGCCGTAACGTA  45 56
JJN11_RS11885 2463640 .. 2463652 -  -3.4  -3.85698   TGCCCGGCCTACAAA                CTGT GGTTA ACAG                CCCTGCGCCACGCTT  55 169
JJN11_RS11860 2454584 .. 2454613 -  -8.5  -2.82623   CGGGTGCCATAAGCA       GGCCGGGTAA-GGC GCA GCCGCCACCCGGCG       CTCTGTCAGTTTACT  62 31
JJN11_RS11855 2454006 .. 2454016 -  -8.2  -4.72272   TTTGCTGATTAAAAA                 CGGC GTC GCCG                 GGTTCAGCGAGCTGG  87 296
JJN11_RS11840 NONE
JJN11_RS11835 2451344 .. 2451371 -  -2.1  -2.97181   ACGTCAAAAGATAAC        CTTCAATCATA ACTTTG TGTGATTGAAA         AAATAATAGACCCCG  42 143
JJN11_RS11830 2450484 .. 2450513 - -10.1  -4.68209   AGGCTAATAAATAAA       CTTTCCGGCAG-CA GCA CGTCTGCCGGAAAA       AAGAACAGGTCATAT 100 77
JJN11_RS11825 2448819 .. 2448838 -   -15  -5.47218   TTCGAGTGAAAAAAA            CCGGCAGC CGAG GCTGCCGG             TTTTTTTTACGCCAT 100 32
JJN11_RS11815 2445090 .. 2445102 -  -3.3  -4.05033   GCCACTCGATATAAA                GACCG TGC CCGTC                CTCGTTGCCCGGCGG  58 295
JJN11_RS11805 2443790 .. 2443809 - -13.6   -5.4505   CGCTTCAATAAAAAA            GGGAAGGC AGAT GCCTTCCC             TTTTTTTTGCCCGGG 100 44
JJN11_RS11770 2435338 .. 2435353 -  -2.4  -3.21099   TGTCGCCATTATTAA              GGGGCG ATTT CACCGC               TGAGAAACAATTAAT  43 81
JJN11_RS11765 NONE
JJN11_RS11760 2432886 .. 2432914 -  -5.2  -2.71416   TAGGAGGTAGATAAT       GTC-CCCACCAGC CCCA GCCGGGAGGTGAC        GGTCGCCAGCGCTGA  48 296
JJN11_RS11750 NONE
JJN11_RS11745 NONE
JJN11_RS11740 NONE
JJN11_RS11735 2427784 .. 2427797 -  -3.1  -4.11394   ACTTCAGGGTCAAAA               CCCTA AGTG TAGAG                CAGCATCAGTAGGTG  56 31
JJN11_RS11730 NONE
        pptA 2426764 .. 2426789 -  -4.1  -3.36694   ATCCAGTTTTAAATA         TCAAAATGACG AATA CGTTATTTTAA          CCGGCAACCTTATTT  50 112
JJN11_RS11720 NONE
JJN11_RS11715 NONE
JJN11_RS11710 2423092 .. 2423113 -  -4.5  -3.01309   ATAGATACAAGGATA           TTCACTAAA TAAA TTTAGTGAC            GTAAAAAAATCACCG  49 381
JJN11_RS11700 2420666 .. 2420682 -  -3.7  -4.21933   CGAATGCGAAAACAA              CACAAAG TCC CTTCATG              CTCTGTCCTTAAGCC  60 34
JJN11_RS11695 NONE
JJN11_RS11690 2419216 .. 2419250 -  -4.3  -2.79803   GAAGGGCACGGAAAC    TGTAGGCCGGGCAAACG CAG CGCC-GCCCGGCATA-A    TCCTTTCATCACCTA  45 38
        vgrG 2416309 .. 2416322 -  -9.5  -2.74188   GACCAGAATCACAAT               GCCCG GCAT CGGGC                GCGGCACGCCCACGT  66 134
JJN11_RS11680 2414274 .. 2414290 -  -3.7  -4.21933   CGAATGCGAAAACAA              CACAAAG TTC CTTCATG              CTCAATCCTTAAGCC  60 34
JJN11_RS11670 NONE
JJN11_RS11665 NONE
JJN11_RS11660 NONE
JJN11_RS11655 NONE
JJN11_RS11650 NONE
JJN11_RS11645 2408730 .. 2408742 -  -7.7  -3.48593   CACGCCGGGATAGAA                GTGAC AGT GTCAC                AGATGGCGGGCGAGA  62 393
JJN11_RS11635 NONE
JJN11_RS11630 2405518 .. 2405535 - -10.5  -3.19449   TAAAGATCTCAGTAA             GCGCCCC TCGC AGGGCGC              TATCGTCGTGTTGTG  73 48
JJN11_RS11625 2404204 .. 2404233 -  -4.1  -5.03747   AAATTGTTGAAAAAA       CGCCGGGTGGTGGC TGC GCCTT-ACCCGGCC       TACGGGGCCGGTGCC  77 84
JJN11_RS11620 2403311 .. 2403339 -  -8.9  -3.81672   AAGAGATAAAATCAA        CACCCTTATAGAT AAT AACTGTAAGGGTG        TTTCGTGAATATCAC  76 140
        fusA NONE
JJN11_RS11595 2398888 .. 2398910 -  -6.9  -3.11559   ACGACAAGCGCAACA           CCCTGCACC ACCTG GGCGCAGGC           ACCTTTGCGACCAGC  54 209
JJN11_RS11585 NONE
JJN11_RS11580 2396479 .. 2396497 -  -6.7  -4.35483   CTGGAGCAGAATAAA            GGTGAGCG GAAA CGC-CACC             AGGATCAGCAATAAT  74 114
        nhoA 2393933 .. 2393991 - -11.4  -2.82681   GAAAAGCGCACCACA CCGTAGGCCGGGCAAGCGCATGCGCCGC CCG GCGTTGCAGGCTATTTCCCCGCCTGCGG ATGGGTTTCAAACCC  76 8
JJN11_RS11535 2383305 .. 2383333 -  -5.2  -4.07568   GGCGCGGGCGCAAAA       CCCGCACCAGCCT TCGC AGG-TGGAGTGGG        TGAAGGTGGAGCTGG  64 75
JJN11_RS11520 NONE
JJN11_RS11515 2379254 .. 2379279 - -15.5  -2.75268   TAATCACCGCTAAAG         GTGCCTGGCAA TATT CTGCCAGGCAC          GCCATACCCTCAGTT  95 35
JJN11_RS11510 NONE
JJN11_RS11505 2377177 .. 2377194 -  -7.7  -3.65902   TGGAGGCGATGGAAA             CCGCGCTG CAT CAG-GCGG             CTGCAGGTCTTTCGG  66 418
JJN11_RS11465 2369449 .. 2369461 -  -5.5  -4.08945   ATTAGGCGGCGAAAA                TGGGC TGA ACCCA                ACGGATATCGCCCGT  64 521
        fdnG NONE
        fdxH NONE
        fdnI 2364133 .. 2364160 - -14.9  -3.82031   GTAAGGAGCATTAAA        CCCGCTCCGAA ACACCG TCCGGAGCGGG         GTTCTTCCCCGTAGG 100 78
        araJ 2361302 .. 2361320 -  -5.9  -3.61517   ATCCGGCGTGAACAA             CTGCGCG TGGAG CGGGCAG             ATATGCTGGTGTTTG  55 481
JJN11_RS11415 2358248 .. 2358276 - -15.3  -2.79183   CGCAGCTGTAGGAGA        TCGCCCGGCGG GTAGCCG CCGCCGGGCAA        TTTTTACTTCGGCTG  95 29
JJN11_RS11405 2354847 .. 2354870 -  -3.8  -4.07568   GGGTGGCGGTGAAAA          CCT-CTGCTGA CGC CCTGCAGCAGG          CGATTGACGAGAACT  60 137
JJN11_RS11385 2351800 .. 2351821 - -12.3  -2.52464   GCCGCGGTGAAGGGA           TAGCCGGGCG CAA CGCCCGGC-A           GGACAATCAATTCAG  78 32
JJN11_RS11375 2349984 .. 2350001 -  -4.8  -2.98823   GTTGTTGCAGACAGA             CATGCC GTCCGT GGCACG              TTCAGTCAGTCCTGT  49 46
JJN11_RS11370 2348377 .. 2348404 -  -5.7   -4.1347   TTTTAATGACATAAA        TACCTCAGA AACAATACGG TCTGAGGTA         TTATCGGCAGCGCAA  66 193
JJN11_RS11365 2346777 .. 2346814 - -11.9  -4.56607   CTACGAACGATAAAA   CTGCAGGCCCGGCAAGCG CAG CGCT-GCCGGGCAATCAG   ACATTGCCTTATGCT 100 34
        treZ NONE
        treY NONE
        glgX 2340094 .. 2340122 -  -9.6  -3.02144   GGATTCGCTGGAAGA       TACCG-CGCCGGC CAAA GCCGACGACGATA        CCTCCAGCCCCTGGG  64 60
JJN11_RS11335 2338725 .. 2338749 -  -6.9  -2.82449   GCCTATGAACATAAT          GCCGGGGGCGC TGC GCTTGCCCGGC          CTGAAACGGCACTAT  54 37
JJN11_RS11330 2338115 .. 2338137 -  -4.1  -4.15748   GGAGCTGAAAAAACA           GCTCGATTT GAATG AATCCGAGC           CAAATATTGACGGCA  62 172
JJN11_RS11320 2333345 .. 2333365 - -12.6  -3.65522   CACGCAGCGTAATAA            GAGGGCAC GAAAT GTGCCCTC            TTTCCGTTTACTCAG  90 33
JJN11_RS11310 NONE
JJN11_RS11305 2327115 .. 2327131 -  -2.2  -3.72453   ATTAACAATTGCAAA              TGGGGT TTGCT ACCCTA              CCAATTTTTGTACCG  50 43
JJN11_RS11300 NONE
JJN11_RS11295 2323947 .. 2323968 -   -13   -3.4015   ATAACAATTGCAGAA           GCCGGAGC ACGACG GCTCCGGC            AGTAAGGTTCAGAAC  87 34
JJN11_RS11290 2322175 .. 2322192 -  -7.7  -4.15106   CATTAATGGTGAAAA             CGCC-GGA AAA TCCAGGCG             GTACACCATTGGAGG  74 495
JJN11_RS11275 2319052 .. 2319065 -  -2.4  -5.10154   ATCCAAAACGAAAAA               CACA GCTGAA TGTG                CCATCATCGGAATCC  73 214
JJN11_RS11260 2317251 .. 2317266 -  -2.5  -3.08679   GGCCTGTATGGAACA              GGCCA CCTCGT TAGCC               GCGAATAAAGCCCAG  42 20
JJN11_RS11255 2316268 .. 2316306 - -23.4  -3.06696   TCGTTCGCGAAGATA   GAGAGATCGTCCGCCT TTACCGC AGGCGGACGATCTCTC   TTCTGTTTATTTCGA 100 139
JJN11_RS11250 2315110 .. 2315120 -  -5.4  -3.38224   ACGGTACCTTAAAGA                 TTGC TGC GCAA                 AGCGCTCCTTTTAAA  54 36
        catA 2314094 .. 2314116 -  -4.2  -5.52384   GTGGCAGTAAAAAAA          TCAGAGCAG TTAAAG CTGC-CTGA           TCAACACATCATCGC  83 200
JJN11_RS11230 2312092 .. 2312111 -  -2.2  -2.79327   TCAGGTTAGCTAAAG            GCAA-ACAA ACG TCGTTTTGC            GGGGCGCCGATCCGG  39 242
JJN11_RS11200 2309134 .. 2309155 -  -5.9   -2.8805   ATGAGGTTTCAGACA           TGACAGAAA TCCC TTTCTGTCG            GTGCGCGGATGTTAG  52 37
         tam 2308120 .. 2308135 -  -7.6  -4.56597   GCCTCGGTGCAAAAA              GCCATT AACA AATGGC               AGCTGCCGTACCGGG  83 211
JJN11_RS11130 2291569 .. 2291592 -  -7.4  -3.69092   AAGATGAAGCGCAAA          GCCGGA-GCTG CCA CAGCCTGCGGC          TGGAGACGGGGATCA  63 131
JJN11_RS11120 2289718 .. 2289751 -  -7.3  -3.10894   ACCACCATGATTGAA     CTCGC-GCGCCAGCTG ACC CATCTGCCGCTGCGCG     TCATCACCAGCGATC  54 439
JJN11_RS11100 2285888 .. 2285900 -  -4.1  -3.25823   CTCCTTCGATATTAA                CGTTC GGG GAACA                GGGTCTGGTAAATAC  48 9
JJN11_RS11095 2284932 .. 2284953 -    -8  -3.73224   TCAGGGCGTAGGAAA           CCTGGGCAC ACCTG GTGCCC-GG           TATTCTTATGGACGA  68 54
JJN11_RS11090 NONE
JJN11_RS11085 NONE
JJN11_RS11080 NONE
JJN11_RS11075 2280849 .. 2280859 -  -4.6  -4.10007   AGAAGCTGGGGAAAA                 CCGC GAT GCAG                 GCTCGCCAGGTCTCC  64 341
JJN11_RS11060 2277973 .. 2277995 -   -17  -3.13164   CCCCTAATCATTGAA           CCGGGTGGCA TTC CGCCACCCGG           TCGCCTCGCTAGCCG 100 34
        marR NONE
        marA NONE
        marB 2275909 .. 2275927 - -13.1  -5.55698   GAGAAGCTAAAAAAA             GCCCCGC GCGGG GCGGGGC             AAAACGAATTAATTG 100 34
        ydeE 2273345 .. 2273357 -  -5.5   -3.7948   TTAAGATGTATCAAA                CCAAC GAC GCTGG                TATTGAGGTAGAGTA  61 287
        ydfG 2259791 .. 2259803 -  -6.3  -3.34398   CCGGGCGGGGAAAGA                TCATC CGC GATGA                ACGCTCAGGCCAGCA  59 13
JJN11_RS10955 2258802 .. 2258812 -  -6.8  -3.53444   CCAGGCGGCGGTAAA                 CAGC AGT GCTG                 AAGGGGTATCCTGCG  60 226
JJN11_RS10925 2252558 .. 2252581 - -18.2  -3.80573   TTGAGTACTATTAAA          CACCGCGCAG GAGG CTGCGCGGTG           CTTTCAGGCAGAATC 100 39
JJN11_RS10915 2251403 .. 2251437 - -10.1  -4.75288   GTACATCAAAACAAA    CGAA-ATTCCCCCGCG CAAA CGGGGGGGAATATTCA     CTGTGGCTCGCGCGG 100 23
JJN11_RS10910 2248852 .. 2248862 -  -2.4  -2.58999   CGCTGACACAGTAAT                 TGGC TAC GCCT                 TTTCAATTTGCACCA  39 18
        dmsD 2247950 .. 2247972 -  -5.4  -3.59979   CTCGCCGACGGGAAA           CGGCCTGGCA TGG TGCGCGACCG           CGAACAGGGGGCAGC  55 258
JJN11_RS10860 2236695 .. 2236725 -  -9.1  -5.54079   TTAAAAAGTAAAAAA      TCAGGAGAGGCGTA GGGT TACGC-TCTCCTGC       GTCGCTGAGGTTATG 100 46
JJN11_RS10855 NONE
JJN11_RS10850 2235176 .. 2235216 -    -7  -4.17316   ACGCTGTCAAAATAA GCCCGGTA-A-GGCCATTCC CCT GAAATGGCCTTCTATCAGGC GCTGTCCGCGGGTTG  73 20
JJN11_RS10840 2233972 .. 2233994 -   -12  -2.62616   TGATTTCGGACATCA           TGATGGCCGG ATG CCGGTCATCA           TGAGTCAGGAGGGTG  78 63
JJN11_RS10835 NONE
JJN11_RS10830 2232898 .. 2232916 - -11.7   -3.9122   CATCTCCGGAAAGAA             CAGGGGC GCGAG GCCCCTG             CAGAGCTTACTGAAC  88 32
JJN11_RS10825 2231630 .. 2231652 - -11.3  -2.78216   TATGGTGATGAATCA           TCCCCGCCA TTATC TGGCAGGGA           TCTCAGCATCGCTGA  74 49
JJN11_RS10820 2229141 .. 2229165 -   -15  -4.56597   CCGTTGCGCTAAAAA          CTGCCGCCCG TATTG CAGGCGGCAG          TGGTGACGATCAGAA 100 35
JJN11_RS10815 NONE
JJN11_RS10810 2227661 .. 2227690 -  -2.7  -5.56673   AGGGAGAAGAAAAAA       CCGGGGCAGCAAT CGCT ATCTCTGCCGCTG        TGCCACTTGCCTATG  85 286
JJN11_RS10795 2224725 .. 2224749 - -17.9  -4.19577   GAAGGGGGAAAACAA          CGCCACCTGCC AGG GACAGGTGGCG          GAGAGGATTACTTCA 100 33
JJN11_RS10790 2223201 .. 2223214 -  -3.1  -3.22298   CTGACGGAGTATGAA               GCCTGG CAG CCAG-C               ATTTGCTGATAACCC  45 332
JJN11_RS10780 NONE
JJN11_RS10775 2220904 .. 2220934 - -12.6  -2.91276   GGGTGGCGTATAAAG       CAGGCTGACGCAAC CAC GTCAGGTCAGCCTG       TCTTAGATATAGCGC  81 122
JJN11_RS10755 2219210 .. 2219237 -  -8.4  -3.39327   TGCCGACATTGATAA        GGTATGGACAGC CATT GCACTCCATACC         ACACCAGGCATACCT  64 389
JJN11_RS10745 NONE
JJN11_RS10740 2217071 .. 2217084 -  -3.1  -4.57791   AATTAAATAAAATAA               CCTTG ATAA CAAAG                TGCTTATTTACCCGG  65 51
JJN11_RS10735 2216157 .. 2216185 - -16.3  -2.88839   AGTCTTAAAGATAAT        TTCATTAAGTGAC ACC GTCACTTAATGAA        GAAGTAGAGTCTGTT 100 39
        osmY NONE
        osmX NONE
        osmW NONE
        osmV 2212478 .. 2212494 - -15.1  -3.10464   TTAGCAATGCGAAGA              GCCGGGC AAG GCCCGGC              TGACAATATTAACTG 100 34
        clcB 2210942 .. 2210959 -    -7  -3.32844   CTGCTGACCGCACAA             GCCATC GCCAAT GATGGC              CTGCCGCTGGTGGGG  62 167
JJN11_RS10690 2206640 .. 2206668 -  -4.4   -5.1971   ATTAAAAACGAAAAA        CCCCGAACTTGT TTCGC ACCAGGACGGGG        TTGCCGCTAACGGCA  80 79
JJN11_RS10685 NONE
JJN11_RS10680 NONE
JJN11_RS10675 NONE
JJN11_RS10670 2203572 .. 2203592 - -18.3  -3.36803   TAACGGTATGTACAA            CGCCGGGTC GAT GACCCGGCG            AGGAAGGTTACAGAT 100 33
         asr 2203064 .. 2203093 - -12.2  -5.60993   CTCCGGATAAAAAAA       CGGCGCTGCCACC TTGCC GGTA-CAGCGCCG       ATGACCAACGTGCCC 100 68
JJN11_RS10660 2201923 .. 2201943 -  -3.9  -4.93365   GTGGAGAACGAAAAA            CAGATGAAG CTG CTGCGTCTG            GCGGGCTGCGATCAG  78 117
JJN11_RS10640 2197616 .. 2197633 -  -3.3  -3.14931   GCCAGGCGGGACGAA             CCCGCAA GCCG CTGCTGG              AGATTGGCTAACCGT  46 40
JJN11_RS10620 NONE
JJN11_RS10615 2191947 .. 2191959 -  -7.7  -2.77043   TTTATTATTTTAAAG                GTGAC GGT GTCAC                GTTTTCTGGAATCGG  59 2
        abgT NONE
         ogt 2189782 .. 2189800 -  -9.6  -2.72144   GCATCTTCTTGAAAT             TCCACAAC TTG GTTGCGGA             TATTTCAATTAACTT  66 70
         fnr 2188869 .. 2188884 -    -4  -4.29106   TGCCAGATCAATAAA              TCAGTA AAAT TACCGA               TCTGGCAAACAGAAG  62 51
        uspE 2187794 .. 2187811 - -14.1  -5.65177   AGAGCTAGAAAAAAA             GCCCGCC AATT GGCGGGC              TTTTTTATGTTTAGT 100 36
        ydgH 2182106 .. 2182122 - -11.5  -5.89947   TAAAGCGAAAAAAAA              GGCGGCA TAA CGCCGCC              TGAGTGAAACAGGTT 100 43
JJN11_RS10570 NONE
        folM 2179817 .. 2179831 -  -3.5  -3.78329   TTTCACTAACGTAAA               GGACG CCCGC CATCC               ACGCCAAAGGATCGG  53 1
        rstA 2178611 .. 2178627 -    -5  -4.60487   CATCAGGGGTAAAAA              TGGGCG GCTGT CGCCCC              TGTTATACGTCCCAG  71 28
JJN11_RS10550 NONE
JJN11_RS10545 NONE
JJN11_RS10540 NONE
        rstB 2174285 .. 2174308 - -11.7  -2.87026   TATATGTATAGCACA          GCACGCCGG GTCAGG CCAGCGTGC           GGTTTAGGTCAGTCA  76 34
         tus 2173200 .. 2173242 -  -6.9  -5.07107   GAAATCGCCAAAAAA GCGCACAAGGAGG-GGCTGAC CCT GAAAGCCTCCGCCCTG-GCGC TGGGGTATCTCACCG  90 97
        manA 2168674 .. 2168695 - -13.7  -4.27483   ATCCATAAAATGAAA           CCGAGCGGT GAAA ACCGCCCGG            TGAGGTCATAAGGTT 100 80
JJN11_RS10510 2167073 .. 2167088 - -10.4  -5.45652   ACTGGCAATAAAAAA              CCCCTC CGCA GAGGGG               TTTTGCTGTTTACTG 100 35
JJN11_RS10495 2164144 .. 2164162 -  -3.8  -3.92373   CAGCGGATCGATAAA            GCCCACG TGCAGG CG-GGGC             ATCAGATTGTGTCGG  57 66
        malX 2161375 .. 2161393 -   -16  -3.95435   CTCCTTAAAAGAGAA             CCCCCTCC TGG GGAGGGGG             CTGGGGCATCAGGCT 100 34
JJN11_RS10480 2160148 .. 2160177 -  -3.5  -2.83903   CGGGGCAAAAAGCTA       TTTGCGCAAGGTA AATA TCCATTGCGCAAC        GCTATTACCGCAGGG  43 30
         add 2159061 .. 2159077 - -15.1  -4.64861   TGGCCTGAAAACAAA              GCCCGGC AAT GCCGGGC              TTTTTCTTACCCGCG 100 32
         blr 2157540 .. 2157559 - -13.6   -2.8552   CTTGATTGATGAAAT            CAGGCGTC GGCC GACGCCTG             GCGAAGAAGGTTAAC  85 75
        ydgT 2157167 .. 2157181 -  -2.8  -3.57651   GGCGAGAGTATATAA               CATTTC CGG GCAATG               AGTACCCTTTTAGAG  49 35
JJN11_RS10455 2156630 .. 2156640 -  -2.4  -2.93869   TATTATCGGATAAAC                 CGGC GCA GGCG                 ACAACAGGTTAACTG  42 49
        rsxA NONE
        rsxB NONE
        rsxC NONE
        rsxD NONE
        rsxG 2151444 .. 2151460 -  -2.1  -3.14344   TACCTGGCTCATGAA              CGCTCCT CAC AGGCGGG              CAGATTGTTAAGTTG  43 2
JJN11_RS10425 NONE
         nth 2150106 .. 2150119 -  -8.1    -5.626   CAGGTGATAAAAAAA               CCGTC GAAT GACGG                TTTCAGTGGTCGGTT 100 28
        dtpA 2147949 .. 2147971 - -13.5  -6.41881   CATAATAAAAAAAAA           GCCGCTAAC GCACA GTTAGCGGC           TTGTAGTCAGTCGTT 100 52
        gstA 2147264 .. 2147275 -  -7.2  -2.93853   GCCCGGCAAGCAAAG                CGCC GCCG GGCG                 AAAAGCGCTTACTTT  59 34
        slyB 2141704 .. 2141715 -    -3  -4.07595   AAATAAAGAAAAAAG                GATT TGCG AATC                 ATCTCATAAGCGCAG  56 174
JJN11_RS10375 2140296 .. 2140313 - -11.3    -5.055   CTAACCTTTAAAAAA             GCCTTGC GAAC GCAAGGC              TTTTTCTTTACTGGA 100 33
JJN11_RS10365 NONE
JJN11_RS10360 2138544 .. 2138560 -  -2.1  -4.72272   TTGCGCCATGAAAAA              GCGGGGA GGT TCACCGG              GCGGTTCCCACAGAG  67 19
JJN11_RS10355 2136011 .. 2136025 -  -2.1    -5.055   TTAAGGGGCAAAAAA               TAACC AAGGA GGTCA               TATGAAGCGATTTAC  73 524
        eptA 2132955 .. 2132980 -  -9.1  -3.31461   TATTCATGTCGACAA         TGTAATAGACC AATC GGTCTATTGCA          AGCCTTACGTTCGAC  69 30
JJN11_RS10330 2132341 .. 2132360 -  -6.4  -5.27335   TTTGCGAAATAAAAA            CGCCTG TTAACTGC CAGGCG             TAGCAATGATGGTTT  91 12
JJN11_RS10325 2131163 .. 2131180 - -12.7  -2.78816   CGATGTTTTAGTATA             GCGGCGA AGTG TCGCCGC              TATCAATGCGGGGGC  81 41
        gloA 2130680 .. 2130698 - -13.8  -4.26327   GATGCAGTAAAACAA             CGGGCGCA TGG CGCGCCCG             TCAGGATCAGTTGCC 100 32
         rnt 2129937 .. 2129952 - -10.4  -5.64421   ACGGTAAATAAAAAA              GCGACC TTCC GGTCGC               TTTTTTTATGCGTTG 100 31
JJN11_RS10305 2128376 .. 2128397 - -15.1  -2.63041   CAAAAGAGGAACTTA           CCCCGCAGG CTTA CCCGCGGGG            CAGGGGGTTAACGCA  95 33
        sodB 2127666 .. 2127698 - -17.9  -2.63073   GCCGCCGAATAACAC      CAAAACGCAGAAGGC CCG GCCTTCTGCGTTTTT      CGTTATGCCGCGAAG 100 28
        purR 2124773 .. 2124789 -  -2.1  -4.09685   GCTGACGCTGGAAAA              CCCCTTC CCG GATGCGG              CCTGCTGCCTCACCT  56 156
        punC 2122554 .. 2122573 - -10.7  -4.14739   CCATCCATGGTAAAA            CGGGAGC AATCCG GCTCCCG             TTAACACTTAATAAT  87 131
         cfa 2121226 .. 2121245 -   -15  -5.31877   ACGCATGATAAAAAA            GACCCCGG CAAG CCGGGGTC             TTTTTTAGCGGGGCA 100 30
        mdtK 2118952 .. 2118967 - -11.8  -3.12856   AATGAAGAGAAAGTA              GCCGCC CGCA GGCGGC               TGGCGGGTGATTAAC  79 36
JJN11_RS10255 NONE
JJN11_RS10250 2118644 .. 2118678 - -10.9  -2.71644   ATCAGAGAAGAAGAG    GGATTGCACCATTTCA GAAC TGAAATGGTGCG-TCC     GAGTGGACTCGAACC  72 16
JJN11_RS10245 2116613 .. 2116633 -  -8.2  -4.26188   GCGACACACTGAAAA            CCCCGGCG TGGCG CGCCGGAA            GAGAGCTGCGGCGTC  77 302
JJN11_RS10215 2109324 .. 2109345 -  -6.5  -2.89527   TTAAGATGACAACTA           TCCTCCCGG CGGG CCGGGATAA            ATGTTTGGGTGATAA  54 44
        hisD NONE
JJN11_RS10205 NONE
JJN11_RS10200 NONE
JJN11_RS10195 NONE
JJN11_RS10190 2104246 .. 2104260 -  -3.4  -5.07652   TGGTGGAAAAGAAAA               CCTGGG AGA CCCCGA               CCGACAAGGTCAACG  78 278
JJN11_RS10175 2102676 .. 2102696 -    -9  -4.73108   GGCATAAAACTAAAA           GCCCC-GAC GCGA GTCCGGGGC            TTTTTACATCAGATC 100 34
JJN11_RS10150 NONE
JJN11_RS10145 NONE
JJN11_RS10140 NONE
JJN11_RS10135 2096164 .. 2096186 - -14.8  -3.59979   CCGTTTGATTTCAAA           GCCCGGCGAG TCT CTCGTCGGGC           TTTTTTGTATAACGG  93 277
        pykF 2091569 .. 2091584 -  -8.2  -5.95539   GCGGAAATAAAAAAA              GCGCCC CGAA GGACGC               TTTTTATACAAACTA 100 56
         lpp 2091029 .. 2091047 - -14.6  -6.34424   GGGGCAAAAAAAAAA             TGGCGCAC AAT GTGCGCCA             TTTTATTAACACAGG 100 46
        ydiK 2078758 .. 2078781 - -15.4   -3.0634   AAGTGGAGCTTAACA          TTCTGGTGGG CGAA CCCACCAGAA           CGGGAGCGTTACTTT 100 34
        rprA 2078458 .. 2078479 -  -9.4  -3.54459   CTAAGGTGCTGTAAA           GGCGGGAA TCTTTT CTCCCGCC            TGGTTTGCAGGATAA  71 37
JJN11_RS10030 2070863 .. 2070882 -  -5.1  -3.41961   AGGATTATGAACCAA            TGTACTA GGCTGT TAGTACA             TGCGGCGATTCAGGC  54 18
        aroH 2069595 .. 2069606 -  -2.2  -5.44119   GCGACCTGAAAAAAA                GC-CC GTT GGTGC                TTAACTTACCGGGCC  79 94
        hemP 2069122 .. 2069146 -  -6.3  -4.62302   GAACAGGCCGAAAAA          GGCGATTACGC TGA GCTTCACCGCC          TGCATGAGGCCCTGC  78 160
        yncL NONE
JJN11_RS09940 2055933 .. 2055950 -  -5.5  -3.63054   TAAAGTTATATAGAA             CGCGATT TTAT ATTCGCG              CCATTATTACCTACA  59 82
        pfkB NONE
        ghoS NONE
JJN11_RS09915 2051964 .. 2052001 -   -14  -3.05384   CTCGGCCTGATCTAA   GCGTTCGCTGCCGGGC GCTGAA GCCCGGCAGCCTGCGC    GTTATGCCGCCAGTA  90 27
        hxpB 2050543 .. 2050557 -  -2.9  -4.61284   AAGATCAAATTAAAA               TGAAA TGGTG TTTCA               AAAATTTTTAAGGCG  65 82
        kduD NONE
JJN11_RS09895 2048916 .. 2048934 -  -3.8  -2.75992   CCTGATTTAATATCA             GATCGG TATCAGT CCGACC             TTGTTGGCGCAAGGT  45 112
JJN11_RS09890 2047456 .. 2047477 - -10.1  -5.77988   ACAGAGATAAAAAAA           CCGCCGTCA TTAC TGAAGGCGG            TTTTTTTTAACTCAG 100 48
        katE 2044610 .. 2044637 -  -9.9   -2.8372   GATCTGTGAGGAAAT       GCCGGGT--GGCG GATT CGCCTTACCCGGC        CTACAAATTCAATGG  68 121
        nadE 2037673 .. 2037692 - -12.8  -5.00616   GGTGCGGTTAAAAAA            GAGGCGGC ATAA GCCGCCCC             GTCAGATTACGCTTT 100 32
         cho 2036420 .. 2036435 -  -3.2  -2.73124   CTGGATGGTGGAAAG              GCGTTT AATC ACACGC               TGCGGCGTCATCAAC  41 317
        xthA NONE
JJN11_RS09790 2027088 .. 2027098 -  -4.6  -3.44703   ACAACATGCAAAAAC                 GCAC ACG GCGC                 ATAGTGCCTCTCTGT  55 40
JJN11_RS09785 NONE
JJN11_RS09780 NONE
JJN11_RS09775 2023693 .. 2023707 -  -2.8  -3.53733   GTCAGTTGAGAAACA               CGTTTC ATC GAAATG               CCCGTCGTAAGAAAA  49 106
JJN11_RS09770 2022340 .. 2022354 -  -2.7  -3.44051   GGCTCACCACCACAA               CGCGC ATCTG GAGCG               GGTATCTGACGCTGA  46 64
JJN11_RS09755 2020480 .. 2020492 -  -3.3  -3.84873   ACATAACAGGAAGAA                GCGTC GAT GAAGC                GTATTGTGATGGCTG  55 245
        gdhA 2018814 .. 2018843 -  -4.1  -5.00616   GTGCGGCGTAAAAAA       TTGCCGGGT-GGCG CTG CGCTTACCCGGCCT       ACGGTTCGTACTTTT  74 85
        sppA 2013137 .. 2013159 - -16.4  -5.27335   TGCTTCAAAGAAAAA           TCCCCTCTTC GAA GAAGAGGGGA           TGGGATTTAACGTAC 100 32
        ansA NONE
        pncA 2011209 .. 2011229 -  -3.9  -5.44119   TTGACGGTAAAAAAA            GCACGCC ACGTAAG GGCGTGG            CGAAAAAAGTGCCAA  83 235
JJN11_RS09710 2009672 .. 2009689 -  -5.5  -2.72829   TAGAGCTGGGCAAAT             GGGCC GATGGCGT GGCCC              TGACCCCGGAGCAGA  47 255
        gapA 2007758 .. 2007774 - -13.7  -6.02546   TTAAAGCAAAAAAAA              GGCGACC AGG GGTCGCC              TTTTTGGATCAATTT 100 51
JJN11_RS09690 2006740 .. 2006751 -  -2.2  -3.49102   AGAGGCGTTACAGAA                GCTGG ATG CC-GC                CTTCCCGGCGCCGAA  47 115
        yeaG NONE
JJN11_RS09670 2001298 .. 2001318 - -18.3  -4.30448   AAAGCTAACGTAAAA            CCGCCGGTC AAT GACCGGCGG            TGGCGTTAACTGTTG 100 31
JJN11_RS09660 1998397 .. 1998418 -  -8.6  -5.03715   ACGATGTTCAAAAAA           GGGCTGGG CCAGAC CCCGGCCC            GGTATGTCGCCAGCC 100 44
JJN11_RS09650 1995924 .. 1995947 -  -4.6  -3.29144   GTATGCCCGGGAGAA          CAGCGTGCC GTTTCTG GGCAC-CTG          CGGCGGATTCCAGCA  49 456
JJN11_RS09640 1994747 .. 1994774 -  -7.6  -3.50737   ATGGAGAAAGATTAA        CCGCCTCCCCTG GTGA CAGGGCAGACCG         GCTGGGATAAACTTT  66 391
JJN11_RS09630 1993437 .. 1993453 -  -5.1  -4.78848   TCCTGAAATACAAAA              CCCGT CGAGTGT ACGGG              GTTAATCGATATTGA  75 27
JJN11_RS09625 1993208 .. 1993225 - -12.7  -5.26918   ACACTTCAGAAAAAA             GACCGCC AATA GGCGGTC              TTTTTCCGCGATTCA 100 112
JJN11_RS09605 1990147 .. 1990160 -  -3.1  -3.53343   AAGCCGCTCGCTAAA               GCATG AAAT CATAC                CCGTTGGTTTAGTTT  49 130
JJN11_RS09375 1953983 .. 1954009 - -10.8  -3.77722   GTTAACTATCAACAA         GCCGCCCGGAAA GGA TTTTAGGGCGGC         TATGAGCGAAAGGCG  81 478
JJN11_RS09340 1950323 .. 1950337 - -11.4  -5.64274   TGAGCTATAAAAAAA               CCGGCT CGA AGCCGG               TTCAGAGAGGATTAT 100 37
JJN11_RS09335 1949626 .. 1949647 -  -7.9  -5.00884   ATCCTCCGGAAAAAA           GGCCCGCCA CGGG TGACGGGCA            AAGACAACTTTTCCA  90 152
JJN11_RS09330 NONE
JJN11_RS09325 1948786 .. 1948796 -  -5.4  -4.00057   ATATGATAAAAAAAT                 TCCA TCT TGGA                 GCCTCGTTTGGGTGT  64 157
JJN11_RS09320 1946502 .. 1946519 -  -9.1  -3.32844   TGCTTTACCTCATAA             TGGCCCA GAAA CGGGCCA              TTGGCTGAAAAACTG  69 44
JJN11_RS09315 NONE
JJN11_RS09310 1945036 .. 1945055 -  -9.2  -3.60798   AGGGTTATAAATGAA            CGGGAGCC TGTT GGTTCCCG             TTTTTTATTATTAGC  71 99
        rluE NONE
JJN11_RS09295 1942481 .. 1942491 -    -4  -2.82987   GGAATACTCACGACA                 TTGA ACT TCAA                 GGCGGCGTATTCTAT  45 40
        mnmA 1941360 .. 1941372 -  -6.2  -3.74693   TGTTATCGCATTAAA                CCGC GGTCA GCGG                CAGGCGTTGTTCGAT  61 8
        hflD NONE
        purB 1939275 .. 1939298 - -15.4  -3.51411   ACCGGGGGAAAGGAA          CCCTCTTTCC GGGC GGAAAGAGGG           TAAAAAGCGTTATTT 100 35
        phoP NONE
        phoQ 1936997 .. 1937016 -  -4.2  -3.41051   TGACTCGGATTATAA            CGGAAGCT CGGC AGCCTGCG             TGTGAGAATCACGCT  50 57
JJN11_RS09265 1935701 .. 1935728 -  -9.9  -4.83615   GAGCGGCGATAAAAA       GCCGGGT--GGCG GCTA CGCCTTACCCGGC        CTACGGTTGCGATTT 100 134
        potA NONE
        potB NONE
        potC NONE
        potD 1929757 .. 1929770 -  -2.4  -4.62712   AAAAAAGAGAATAAA               GAAC GTTATT GTTC                AGCTTCATATGTACT  63 92
JJN11_RS09230 1928721 .. 1928741 -  -5.4   -3.5882   CAGATTACCCGCAAA           GCCCTGACG ACAA CG-CAGGAC            CTTACGCAGTTAAAA  56 53
JJN11_RS09195 1922007 .. 1922027 -  -2.4  -3.61178   CGCACGCAGCGCAAA            GCCCCCCT CTCAC AGGCGCGC            TAGCGTGTCGCCTGA  47 25
         mfd 1918427 .. 1918454 -   -17  -3.11208   GCGCAGGGAAAATCA        TGCCGGGCAACC CGAT GGTAGCCCGGCA         CAGGGTCAGGCTACG 100 31
JJN11_RS09185 1917313 .. 1917332 - -13.6  -5.76949   CACTGCGAAAAAAAA            CGCTCTGC CTGT GCAGAGCG             TTTTTTTATCTGTTA 100 44
JJN11_RS09175 1915824 .. 1915837 -  -4.5  -4.23674   GCGCAGTAACATAAA               TCCCG TTAT CAGGA                CGGAAAGAAAAGCAA  64 326
        fhuE 1906988 .. 1907005 - -12.7  -5.24531   AGCGCGCACAAAAAA             GGGAGCC ATTT GGCTCCC              TTAGACGCTGCATGC 100 45
JJN11_RS09055 NONE
         rne 1888915 .. 1888932 - -12.7  -5.49234   AGAGGCAATAAAAAA             GCCGACC CGAA GGTCGGC              TTTTGCGCTTAAGCA 100 44
JJN11_RS09035 1886521 .. 1886536 -  -2.6  -3.89822   CAGGCATCTTATAAA              GCAT-TC AGC GATATGC              AGGGTATGTCTCTGT  53 137
        flgA 1875842 .. 1875856 -  -2.9  -4.63542   CATAATCTTTAAAAA               GATTA TAGGT TAATC               AGAATATTCCCATCA  65 13
        flgM NONE
        flgN 1874987 .. 1875010 - -13.8  -5.53288   CGTAATGCAAAAAAA          GGGGAGCGCC TGTC GGTGCTCCCC           ATTCCTGTGGCTATC 100 47
        mdtH 1869453 .. 1869478 - -13.3  -2.87132   GTTTTCCTCGACATA         CTGGCGCTTCA ATCC TGACGCGCCAG          TATGTCAGGGGAGTG  85 103
JJN11_RS08935 1868855 .. 1868868 -  -9.5  -5.40072   TTTTCTGTAAAAAAA               GGCGC CGAA GCGCC                TCACGGGTTAATCGA 100 33
        pyrC NONE
        dinI 1867359 .. 1867374 - -11.8  -5.69023   AAAAGAGGAAAAAAA              GCCGGG GCGA CCCGGC               AAAAAAACACAATGA 100 51
        bssS 1866828 .. 1866848 -  -7.6  -4.59089   CAAGGGAGAAATAAA           CGAGGCACC GTGA GGTGCCT-G            TTGGGTGAAAAAGTG  81 49
        solA 1865609 .. 1865628 - -13.6  -3.81154   AAAAGATGCATGAAA            GGCTTCGG AAAC CCGAAGCC             TGACACCATTATCGG  95 34
JJN11_RS08910 1865261 .. 1865277 -  -4.5  -3.55966   TGAGCAAAACATTAA              TGCAAAT GAT ATTTACA              CATATTCAATATTAA  55 215
JJN11_RS08905 NONE
JJN11_RS08900 1864031 .. 1864058 -   -17  -3.57792   GGAGTGACCCTGAAA        CCTTGCCCGGTC GCGT GACCGGGCGAGG         GTATTATTTCTGCTG 100 29
JJN11_RS08890 1861799 .. 1861818 -  -9.2  -2.86011   TAAGCTTAAAGAGCA            GTGCGGCC CGGA GGCCGCAG             GGGAGGATTAATAGC  65 33
        mdtG 1860398 .. 1860418 -  -3.3  -2.76453   CCATAATTGCAAGTA            TGAAAGC GGCAAAA GCCTTCA            CGCAGCGGTCTTAAT  43 36
JJN11_RS08880 1859686 .. 1859705 -   -10  -4.46112   CGCCAGGCAAATAAA            TACCGGCC CTGG AGCCGGTA             TTTTTATCTTTTGAG  85 276
        mdoC 1854086 .. 1854109 - -15.3  -2.70932   TGGTTGCTGTAATGA          CGCGCCGGT TCAGCG ACCGGCGCG           CAACGGCTTAGCTGG  95 33
        csgD NONE
        csgE NONE
        csgF 1848039 .. 1848052 -  -3.1  -4.22652   CGACATTATTTAAAA               GTCGGT AGA ACCG-C               TTTGCAAGCCAGCAA  59 6
        csgG 1847135 .. 1847154 - -13.6   -5.4833   TGAGCGAATAAAAAA            GGCGAGAC CAGG GTCTCGCC             TTTTTAATGCGCTTT 100 44
JJN11_RS08785 1843868 .. 1843887 -   -10  -5.79526   ACATGCGAAAAAAAA            GCCCGCAT TTGC ATGCGAGC             TCTTCTTTAAAGATG 100 39
JJN11_RS08775 NONE
JJN11_RS08770 1840757 .. 1840782 - -11.9  -2.98947   GTTAAGCAATAAGCA         GCTCCACGG TTTTCAGG CCGTGGAGC          GGGCGATTAGCGCTG  78 32
JJN11_RS08765 1840522 .. 1840541 -   -10  -5.79526   ACATGCGAAAAAAAA            GCCCGCAT TTGC ATGCGAGC             TCTTCTTTAAATATG 100 39
JJN11_RS08760 1840339 .. 1840358 -   -10  -5.79526   ACATGCGAAAAAAAA            GCCCGCAT TTGC ATGCGAGC             TCTTCTTTAAATATG 100 39
JJN11_RS08755 1840158 .. 1840177 - -13.6   -5.0133   GATGGCGCGAAAAAA            GCCCGTAC GAAA GTACGGGC             TTTTTTTTAATAGCG 100 38
JJN11_RS08725 1832024 .. 1832053 -  -7.7  -4.42386   GCGGGATCTATAAAA       CGCGCTTCGCCCA GGAG TCGGTGATGCGCG        TTGACCAGCCGGTGT  78 151
        putA 1825576 .. 1825600 -  -9.9  -5.24129   CCTCCCTATAAAAAA          GCCGGATGCGC TGT GCTTATCCGGC          CTACAAAAACAGAAT 100 93
JJN11_RS08705 1824711 .. 1824727 -  -4.3  -3.53224   TACTTTCCCTCCAAA              GAGGCGC TGT ACGTCTC              CGTTCTGCAACAGAT  51 458
        rutA NONE
        rutB NONE
        rutC NONE
        rutD NONE
JJN11_RS08675 NONE
        rutF 1820151 .. 1820161 -  -2.4  -3.18737   TAAGGAGGATTAACA                 GGCG GGT CGCA                 TCAGCGCGTGGTAGC  43 9
        rutG 1818766 .. 1818792 -  -6.5  -5.79595   GCTGAAAAGAAAAAA        GAAGGCGCTGCC GGAC GACAGCGCCA-C         GCTGGATCAATCCTG 100 32
        wrbA NONE
JJN11_RS08645 1816191 .. 1816227 - -18.8  -3.14211   ACCGCGGCGCAGTAA    GTTCAGCCCCTCCCCC TGAAG GGGAGAGGGGCTGAAA    TGTCGGGTGGCGCTT 100 133
JJN11_RS08635 1813989 .. 1814007 -  -5.2  -3.66429   AATAATCGCGAAGAA             GCCAAAGG CTT CCTTGAGC             GCAAATGGAAAAAAG  58 372
JJN11_RS08615 NONE
JJN11_RS08610 1810473 .. 1810494 - -11.5    -3.494   TAACTCTTGATACAA           GGTGTCCGG CGAA CCGGGCACC            TGTTTTTTTCCTTTC  83 172
JJN11_RS08590 NONE
        leuA 1806269 .. 1806287 -  -3.8  -4.72272   CGCTGGCAGCAAAAA             CGCTCAAT ATT AGTGAACG             CACCCTGCTGCGGCA  75 221
JJN11_RS08565 NONE
JJN11_RS08560 1803045 .. 1803056 -  -2.2  -3.89033   TTTAAATAATAAATA                TCCC CTCA AGGA                 CCAGACAGGCCTCGC  52 0
JJN11_RS08555 NONE
JJN11_RS08550 NONE
        cutC NONE
JJN11_RS08540 1798747 .. 1798759 -  -9.1  -3.07816   TCCTTATTTACTCAA                GCCTG TCA CAGGC                ACAATGATGCCGCAC  66 183
JJN11_RS08535 1798468 .. 1798495 -  -9.8  -2.76442   ACGAGCATGCAAGCA        GGGCAGAGTTTC CGGC GATCCTCTGCCC         GCTGTGCTACCTTAT  68 37
JJN11_RS08530 1798164 .. 1798203 -  -3.4  -3.76492   TGTAAGGCTATTAAA  CACGCGCCCCCTTTTTTG GCTG CAAGCATGAGGGCGGATG   AGATTATTTCTGCTG  53 29
JJN11_RS08525 1797071 .. 1797094 - -10.4  -4.59773   TTTCAGCTTTAAAAA          TCCGTTA-CCG CTT CGGATAACGGA          TTTTATAATAAGTCT 100 78
JJN11_RS08520 1795730 .. 1795755 - -14.9  -6.28401   GAAAAAAGAAAAAAA         CATAAATGCCC GTCA GGGCATTTATG          TTTTAAAAAGCGATT 100 139
JJN11_RS08500 1791012 .. 1791034 - -19.2  -4.07568   CGTCGCCTGCTAAAA           CGCCCCTCTG AGC CAGAGGGGCG           ATCCGCGCAATCCTC 100 39
JJN11_RS08495 1790318 .. 1790328 -  -4.6  -5.60864   CAGAGAGTAAAAAAA                 GCCG CGA CAGC                 ATAATAGTAACGTGA  93 52
JJN11_RS08490 NONE
JJN11_RS08485 1788578 .. 1788605 - -19.2  -3.54424   GTTTATGCCCTGAAA        GGCCCGGCAAGCG TAG CGCT-GCCGGGCC        TGTAAAGTGGCAGAA 100 48
JJN11_RS08455 1780459 .. 1780478 - -12.2  -2.72991   TCAGACGGGGAAGGA            TACCCGTG ATGC CACGGGTA             TCCGAAACATCAGGA  78 35
JJN11_RS08450 NONE
JJN11_RS08445 1777482 .. 1777504 - -15.6  -2.87132   TGTCCTCCTGATATA           CCCGCAACAG TAG CCGTTGCGGG           TATCACCCTGTTTAT  95 37
JJN11_RS08440 1776089 .. 1776128 -  -2.9  -4.07618   GGTTTAACAATGAAA CCTCTGCTCG-CCAGGCGA CCTC TTATCTGGTCGAGCA-AGG  CCATCGGCGTATTGG  58 478
JJN11_RS08425 1774175 .. 1774190 - -11.8  -2.65223   CAATGTCATCATAAT              GGGGCC TGTG GGCCCC               TTTTTATATTCACTG  75 46
        yccA 1766388 .. 1766405 - -14.1   -5.0917   TTACCAAAAAAGAAA             GCCCCGC ATAA GCGGGGC              TGGTTATAGAGCACT 100 46
        tusE 1765953 .. 1765967 -  -8.6  -4.08767   TGCACGGGTTGAAAA               GGTTCT GTC AGAACC               GCATCAACCCGGCCG  75 68
        rlmI 1762904 .. 1762932 -  -2.4  -3.53811   GTCACCTCCCGGAAA        TGTTACTTACAC TATAG GTGTGGGCAACA        TTCCACTTTTCAAGT  47 40
        hspQ 1762540 .. 1762563 - -13.2   -5.5604   CGAAGTAATAAAAAA          CCCGGTCAGCC GTG GGCT-ACCGGG          TTTTCATTAGTTACG 100 32
JJN11_RS08355 NONE
        mgsA 1760391 .. 1760406 -  -6.8  -3.86897   GCCAGCCTGGAGAAA              GCC-GCG ACC CGCTGGC              CAAAGTTGCAGCTGG  66 367
JJN11_RS08340 NONE
        yccS 1755910 .. 1755942 -    -4  -4.84359   GGAGTGGTACAAAAA     GCTGCCGGTTGAGAC GCCC GTCACT-CCGGCAGT      TGATTAACGTGCTGT  74 13
        sulA 1754278 .. 1754288 -  -5.4  -3.41795   AAATCGCCATGAGAA                 TCTC AAT GAGA                 GTCACGGTTAAATCC  54 330
        ompA 1753146 .. 1753163 -  -9.8   -5.4833   TCAGGCAATAAAAAA             CCCCGC AACATG GCGGGG              TTTTTTGTCAGACGA 100 45
JJN11_RS08310 NONE
        fabA 1750074 .. 1750098 - -18.7  -5.40072   GTCTCTTTAAAAAAA          GAAACCTCCGC ACT GCGGAGGTTTC          GCCTTTATATGCTCT 100 55
JJN11_RS08270 1740874 .. 1740907 - -11.1  -2.80784   TAAAGTGATGAATGA     CAGGCTGAAACCG CAACCGGT CAGCTTCAGCCTG      GAACAGGCCGTTTAA  74 37
        ssuE 1737991 .. 1738003 -  -9.1  -3.53224   GAGCCTTTCTGGAAA                GCCAC TTT GTGGC                CTTTCAGATCCGCCA  71 406
        ssuD NONE
        ssuC NONE
        ssuB 1734557 .. 1734568 -  -7.2  -4.03234   CTGGCCTGACAGAAA                GCCG GGTC CGGC                 CTGGGTTCTGTTTTG  71 164
        pncB 1730340 .. 1730369 -  -3.5  -5.26119   TGTCCAAAAATAAAA       TCTGTATCCCCCT AAAC AGGGGGATATCTA        TGTTACCTGGCATCT  79 127
        asnS 1728871 .. 1728895 - -12.9  -4.46926   CACGGCAGGATAAAA          TAATGGCCAGC ATA GCTGGCCATTG          AGTATTACGGGATTA 100 38
JJN11_RS08215 1727175 .. 1727190 - -10.4  -5.64274   TCAGGCATAAAAAAA              CAGGGC CGAA GCCCTG               TTTTTTAGACATATA 100 58
JJN11_RS08210 1725740 .. 1725778 - -23.6  -2.70932   CCGGTCTGGTAATCA   CAATTAAAAAAGCCTGCT TTA AGCAGGCTTTTTTAATTG   CCCGGTGGCGCTACG 100 95
        elyC 1713951 .. 1713976 -  -5.4  -3.36991   CAGTATGCTCAAAGA         TC-CCCGCAGC GATCA GCTGCTGGCGA         TGGTCGGGCCCGGCG  53 247
        ycaO 1697379 .. 1697399 - -15.5  -5.27023   ACCGTAAAAATAAAA            CGGGGCAAT AAA ATTGCCCCG            TAATATAACGTAGGT 100 78
        focA 1696143 .. 1696160 -    -2   -3.1247   AGTTCGGACATGTAA             CACCTA CCTTCT TAAGTG              GATTTTTTATTTACT  43 55
        pflB 1693794 .. 1693813 - -11.4  -4.56597   GGGGGGTGTTAAAAA            GGCCCCAC TTGC GTGGAGCC             TTTATTGTACGCCTA 100 68
        pflA 1692888 .. 1692907 -   -15  -3.98448   GACTAATAAATAGAA            CGCCCGGT AAAA ACCGGGCG             TTTTGCTAATACATG 100 31
        trxB 1677129 .. 1677142 -  -8.1  -4.04318   CGCAGAGACGATAAA               GGCGA CTTA TCGCC                GCCTTTTTTACGTTT  73 59
        cydD NONE
        cydC NONE
         aat 1672605 .. 1672632 -  -6.4  -4.00348   CCTCAATTAAGTAAA        GATTTG-TGCGTT TAA AACGCAACAAAGC        AGTTTCAGCGTATTG  68 213
        infA 1672259 .. 1672276 - -14.1  -5.60993   CGGGGCATAAAAAAA             GGCCGGG ATAA CCCGGCC              TTTATTATTCTTTGT 100 64
        cspD 1667857 .. 1667877 - -11.1  -5.38054   GCCCACAAATAAAAA            TGCCAGCGC GTC GGGCTGGCA            TTTTGAGTGCGGGGT 100 61
JJN11_RS07970 1663540 .. 1663577 -  -8.3  -3.08679   CGCTGTTACGGAAGA   TGTTCTCCCGCGTGC TGTGGCTG GCACGCGGGAGGGCG    GACTAGCGGCGGGTC  63 28
        aqpZ 1660761 .. 1660793 -  -8.4  -4.25074   CAGTAAAGGTGAAAA     CAGTGCCGGGC-GGCG CTT CGCTTGCCCGGC-CTA     CGAAATGCTGTCCCG  77 90
JJN11_RS07955 1659693 .. 1659703 -  -2.4  -2.74701   ACATGTTTAAGATTA                 TGCC TGT GGCG                 ATACGGTGGGAAGCG  39 113
         hcp NONE
         hcr 1656788 .. 1656809 -  -2.2  -4.11692   TAGGCACCGGGAAAA           CCTTCGCGC TGGAT GCG-GTAGG           GGCATGGGCGATTGA  59 231
        poxB 1654570 .. 1654608 -  -8.4  -2.72324   GCTACGTAAATCAAT  CATTTCACATC-CCTAT AATTTA AAAGGTGATGTGAAATG   TTTTACCTGAGCCAG  61 28
        ltaE NONE
JJN11_RS07925 NONE
JJN11_RS07920 1650973 .. 1650992 - -13.6   -4.4261   GCTTTAATAGCAAAA            CGGCAACC TCAG GGTTGCCG             TTTTTTTCTCTGCCG 100 53
JJN11_RS07840 NONE
JJN11_RS07835 1632135 .. 1632154 -  -2.2  -4.32034   GCACCATTATTAAAA            TTCTCTCA GACC TGAAAAAA             GGTCATTACATTGTG  62 85
JJN11_RS07815 1629486 .. 1629514 -    -9  -4.35483   GTCGACGAGAATAAA       TGTC-GGCATTCC TCGC GAAATGCCAGACA        TTTTACGGGGTTTTC  83 70
        artP NONE
        artJ NONE
        artQ NONE
        artM 1626392 .. 1626432 - -13.6  -4.21098   ATATTAATTGGAAAA  TAAAAAAGACGGGAAG GTTTAAGGG CTTCCCGTCTTTCTTA  AATCAAACATATGCA 100 44
        artJ 1625402 .. 1625413 -  -7.2  -4.82901   GTGCCGTTATAAAAA                CGCC GGGT GGCG                 GCTTCGCCTGACCCG  83 158
JJN11_RS07730 1614174 .. 1614192 - -14.6  -5.29445   GGGCAAGAATAAAAA             CGCCCTCA GAG TGAGGGCG             AGAAAGGCTTACTGG 100 34
JJN11_RS07720 1611692 .. 1611728 -  -3.7   -5.4833   TCAGGCAACAAAAAA    CCCATCAACCTTG AACCAAAACGG CGGGGTTGATGGG    CTCCACAAATTGGGG  81 136
JJN11_RS07715 1611012 .. 1611028 -    -5  -4.12188   GGATTACTGCTAAAA              GGCGCC TTGCT GGCGCT              TACTTCTCGTTTTGC  64 25
JJN11_RS07675 NONE
JJN11_RS07670 1601734 .. 1601750 - -13.7  -3.19653   TTACAACCGGATTAA              GCGGGCA TGG TGCCCGC              ATTTTGCCGGGTGGC  88 205
JJN11_RS07660 NONE
        ybjG 1598938 .. 1598963 - -12.6  -4.65895   CCTCGGAGCCAAAAA         TGAACCCCCG TTACGC CGGGGGCTCA          AGTTTAACTCGCTAA 100 48
        deoR 1597778 .. 1597795 -  -5.5  -3.34398   GTTTTTGGGGAAATA             CGGACAG GGTG CTGTCGG              AGATGGGGTTAAGCA  53 390
JJN11_RS07640 1595640 .. 1595670 -  -9.8  -2.73159   TGAATCGCTGTAAAG       CGGGTGAGAACC CTTATTT AATTCTCACCCG       ATTAATATATTACGG  66 88
JJN11_RS07635 1591800 .. 1591812 -  -3.3  -3.83026   GTGCTGCATATTAAA                GTGCC TCT GTCAC                AGTCTGTTCAACAAC  55 8
JJN11_RS07630 1590265 .. 1590296 - -16.8  -3.63895   TTTAAGTAGTTGAAA      GC-AAAACGGCAACC ACA GGTTGCCGTTTTAGC      GTCTGGCGCGGCTCT 100 47
JJN11_RS07620 1587796 .. 1587811 -  -2.4   -4.7416   GGAAAAGGGCAAAAA              CTACGG CTGG CCGCTG               GCGACGCATGGCATC  70 384
        rimO 1584904 .. 1584920 - -13.7  -5.59534   AATCACAATAAAAAA              GGGGACG TGA CGTCCCC              TTAATCTATGCAGCT 100 47
JJN11_RS07565 NONE
JJN11_RS07560 1575790 .. 1575803 -  -2.3  -3.75153   GTGCGTGAAGCGAAA               GCGGA AGAT TACGC                AGCATGGTTAGCGCT  51 483
JJN11_RS07550 1574915 .. 1574931 - -15.1  -3.08522   CACGCAGGCGAAAAG              CCCGGCC AGC GGCCGGG              TGGGGAGTTAGCGCA 100 33
JJN11_RS07545 1574044 .. 1574076 -    -9  -3.09234   ACAAACGGCATTTAA     CCCGTAGGC-CCGCG CAAG CGCAGCGCCGCCGGG      CAAGGGCAGAGATTA  66 38
        moeA NONE
        moeB 1565284 .. 1565302 -  -3.7  -4.11216   CCGCGAGCTTCAAAA             CCCCGCG TCAGG CGCTGGA             TTGCCTGCTGGCGGG  62 254
JJN11_RS07500 NONE
JJN11_RS07495 1561237 .. 1561263 - -10.1  -4.39318   GAATGAAAGTGAAAA        GCCGGGT-GGCG CTGA CGCTTACCCGGC         CTACGGGGGGAATTG  90 77
JJN11_RS07490 1560331 .. 1560341 -  -5.4  -4.07568   GCTCCGGCGGGAAAA                 TCAG TTG CTGA                 AAGGCGGGGTGTTAT  64 15
JJN11_RS07485 1558876 .. 1558911 -  -9.6  -2.55999   CGAGGGGAGATTAAG    CGGGGCGGCGACGCCCA TAC TGGACG-CGCCGCCATA    AAGGGGTCAGGCCAT  66 32
        ldtB 1555725 .. 1555759 - -10.8  -3.06312   AAATGCTTTAGTGAA     CGGAACAATTCCACCG TTA CGACAGAATTGTTCCT     TTAACAAACGGTCGA  74 41
        mntS 1548895 .. 1548921 -  -7.4  -5.75599   TAAATGACAAAAAAA        TGAAGCGGCGT ACCGCG ACGCCGCTT-A         GTGGGAAGGTTTGTT 100 23
JJN11_RS07440 1546802 .. 1546815 -  -9.5  -5.10767   GAGCCAATATAAAAA               CCCGC TTCG GCGGG                TTTTTTTGTTTTTGT 100 266
        rhtA 1544977 .. 1545005 - -18.3  -3.09671   ATGCGAATGGGAATA        TTTTGCCGGGAAG CCG CTCCCCGGCAAAA        TAACGCCTGCTAGCG 100 35
         dps 1544191 .. 1544209 - -13.8  -4.25074   CATGAAAGTGCAAAA             CCCCCGCC GAG GGCGAGGG             TGTAATAGCAAAAAG 100 48
        glnH 1543041 .. 1543061 -  -8.4  -2.89304   GTGAAAACAGACAAT            TAACCATC AGGGG GATGGTTA            CAATTGTAGGCCCGG  62 89
        glnP 1542350 .. 1542361 -  -4.4  -2.95448   TTAAATTCAATCACA                GGAT TTTC ATCC                 TTCTTTCAAGACGAC  47 9
        glnQ 1541582 .. 1541608 - -12.3   -5.4505   TCCGGCAATAAAAAA        GCCGGGT-GACG GCTA CGCCTACCCGGC         TTACAAAGGGCAAAA 100 43
        ybiO 1539169 .. 1539210 -  -3.8  -5.04249   TGGTGAAAAAAGAAA TGGCCCAGG-GACAGAAGCA GAGC CGCTT-TATCGCCTGGACCT TTATGGACAACGCCA  81 92
        mcbA 1537781 .. 1537808 -  -4.8  -5.00884   ATTTTGGGCAAAAAA        TGTACTGCACCC CGGG GGATGCAGTATG         CAGTGCAGAGCGGGG  80 43
JJN11_RS07390 1535244 .. 1535262 - -12.4  -2.75183   ACGTGCACTGAAGCA             TGGGGAGC CAT GCCCCCCA             GAGGATCAGAAGTGC  80 31
        ybiX NONE
JJN11_RS07380 1533943 .. 1533960 -  -2.6  -2.83822   TCGATGTGATAAGTA             TCACGC TTTTTT GCGAGA              GATAAAATCGAAGAG  42 234
        ybiJ 1533520 .. 1533543 - -18.2  -5.63103   TTTTAACTAAAAAAA          GGCCCGTCCA GCGA TGGACGGGCC           AAAAAAATAACAACA 100 105
JJN11_RS07365 1531693 .. 1531728 - -11.9  -3.09784   GGACTCTGAATAAAG    CTGACAGCGCCTGGCC GCAGG GGCCAGGCG-TAACAG    GATTAGTTGTACATT  79 28
JJN11_RS07360 NONE
JJN11_RS07355 NONE
JJN11_RS07350 NONE
JJN11_RS07345 1526870 .. 1526895 - -10.4  -5.63103   CCCGAAGTAAAAAAA         CGCCCGGC TAAGCTTGCC GCCGGGCG          CAGGAAAAGCATCCG 100 58
        cecR NONE
        hlyD NONE
JJN11_RS07320 NONE
JJN11_RS07315 1518457 .. 1518473 - -13.7  -3.76186   GACCTACAAAATCAA              CGGGCCT TGT AGGCCCG              GTAAGGTAGCGCCAC  93 64
JJN11_RS07310 1517114 .. 1517125 -  -7.2  -3.21416   CAGCGTCATCATGAA                GCGC GCTG GCGC                 GAAGTGGCGGATGTG  56 197
JJN11_RS07300 NONE
        clsB NONE
JJN11_RS07290 1513754 .. 1513779 -  -8.2  -2.54098   GTCGTTAAGTAATAT         GCCCGGC-GGC GCTGT GCTTGCCGGGC         CTACGGTCTTCCTGG  60 77
        yvcK 1508813 .. 1508825 -  -3.4  -4.46212   CGCTGCAGCAGAAAA                TCCA CGAGC TGGA                AGGGCAGATGATGCA  66 221
JJN11_RS07245 1505260 .. 1505299 - -11.2  -3.14132   GCTGGGCTGCATCAA  CCACGCCATGCTGACCGC CCAG GCGATCCGCCAGGCGGGG   CTGCATGTTGCAGGC  69 189
        bioA NONE
JJN11_RS07215 1499503 .. 1499516 -  -5.9   -3.8211   GGCGAGCGAGAACAA               GGCGC TGTC GCACC                CGCACAGCGTGGACA  61 484
JJN11_RS07185 1492662 .. 1492674 -  -3.4  -4.07885   TATCCTGCGTTAAAA                CTGT TTTGT ACAG                GCTGCCAGGGAAAAC  58 465
JJN11_RS07175 1491211 .. 1491233 -  -9.9  -4.88736   TACTAGTTATAAAAA           GGCAAACAG GGCAT CCGTTTGCC           TTTCTATTTTTCTAT 100 409
JJN11_RS07155 1486162 .. 1486178 - -13.7  -4.72986   CAGCCGCAGCAAAAA              GGGGGAG TTG CTCCCCC              TTTTTGCTAAATATT 100 40
JJN11_RS07140 1483394 .. 1483407 -  -2.3  -2.70525   CCGCTGCAAACCAAC               CTGCG CATT CGCAT                TCAGGCGTCCGATGT  38 261
        modE NONE
        modF 1478307 .. 1478328 - -12.3  -4.56775   AGGTTGTCCGAAAAA           GAGCGGGGGC GTG GCCCCCG-TC           AGGATGTCAGATGCG 100 32
        galE NONE
        galT NONE
        galK NONE
        galM 1473847 .. 1473864 - -12.7  -5.65177   AGATGGATAAAAAAA             GCCCTCC GGCA GGAGGGC              TGGTTTTTATTGCGC 100 32
        gpmA 1472846 .. 1472865 - -12.2  -5.40072   TCGCGGCTAAAAAAA            TGCCGGAT TCGC ATCCGGCA             TTCAGAACGCAGAGC 100 67
JJN11_RS07075 1470901 .. 1470926 -  -8.3  -5.24531   ATTTTGCACAAAAAA         TAAAGGAGAGC CGTA GCACTCCTTCA          TCATAACCGCATTAC  95 47
        zitB 1469865 .. 1469895 -   -22  -3.15861   CAGGATGTGGATCAA       CAGCGCGCGTGAAC GGG GTTCACACGCGCTG       GCACGTTAATGGTGG 100 31
JJN11_RS06935 1445348 .. 1445374 - -10.1   -5.1287   GCCAGATGTAAAAAA        GCCGGGT-GGCG CTTG CGCATACCCGGC         TTAGTTCGTTTTTAC 100 76
        kdpF NONE
        kdpA NONE
        kdpB NONE
        kdpC NONE
        kdpD NONE
        kdpE 1428723 .. 1428739 -  -2.3  -2.73875   TTGGCCTCAACACGA              TTTTACG TCA CTTAAAA              AACTCAGGCCGCAGT  39 479
       speFL 1428016 .. 1428044 -  -7.4  -2.60075   GTGTGTGTAAGCAAG       CGCGCCAGAAGTC GAAG GACTACCGG-GCG        TTGAAGAGATGAAAG  56 16
        speF NONE
        potE 1424169 .. 1424180 -  -5.8  -4.59853   CGAAGTGCTGAAAAA                CGCA TAAC TGCG                 GTTTGTGCGCCGGGC  75 117
        ybfF 1420960 .. 1420994 -  -2.1  -4.23054   ATACATCACCGAAAA    CGGCACGCCAACGA CTGGAGGC CCGCTGGCG-ACCA     GTCGCTCTCTTTTTA  57 42
        ybfE 1420514 .. 1420525 -  -2.2  -3.49858   GCAATCATAGCAGAA                CAGA GAAG CCTG                 CGGAAACTGCAATCA  47 95
        fldA 1419875 .. 1419902 - -17.1   -3.1994   GATATTACCTATCAA        TGCGGCGCAAC TATGGC GTTGCGCCGCA         GTATGATCAGGCGTT 100 32
         fur 1419136 .. 1419153 - -11.3  -5.29782   GACAGGCATAAAAAA             GCCAACC GTCA GGTTGGC              TCGGAGCAGGCGGAT 100 44
        nagB 1411846 .. 1411871 - -13.3  -3.01831   GGTTTAAAAATAGCA         TGCCGTCTCTG CAGG CAGAGACGGCG          TCACATTACAGACCT  86 31
        nagA NONE
JJN11_RS06770 NONE
JJN11_RS06765 1408620 .. 1408637 - -11.3  -5.46698   GGCAAAATGAAAAAA             CCACGTC CGGG GACGTGG              TTTTGGGTTACAGGA 100 33
        asnB 1406696 .. 1406713 - -12.7  -5.47218   CGCGAGGCAAAAAAA             GAGGCCC CGAA GGGCCTC              ATGGCGATCTGACTG 100 42
JJN11_RS06755 NONE
JJN11_RS06750 NONE
JJN11_RS06745 1406208 .. 1406223 -  -4.6  -3.66844   GCGATACCCCAATAA              CCGCGG AGAA CCGCAA               AATCGAAGAAATATG  57 39
JJN11_RS06740 1406098 .. 1406114 -    -3  -3.33815   ATGTGCTCTAACCAA             CTGAGCT ACGT AGC-CAG              ACTGCTTTCTTCGAT  47 40
JJN11_RS06735 NONE
JJN11_RS06730 NONE
JJN11_RS06725 1405781 .. 1405796 - -10.4   -5.1417   GTAGAAAAGCAAAAA              GCTCGC CGAA GCGAGC               TTTTTTTATGTGGCT 100 36
        miaB 1402939 .. 1402960 - -12.3  -3.82202   CAGGGGGAAATACAA           GGCCTGTCA GAAA CGACAGGCC            GAAGGATCACGGCTG  91 32
JJN11_RS06710 NONE
        ybeY 1401285 .. 1401298 -  -9.5   -3.1739   ACATTATGCCAGTAA               GGCGC AAAC GCGCC                CTACAGACTACTCTT  70 33
        corC NONE
         lnt 1398731 .. 1398767 -  -5.8  -3.01791   ACCCGGCCTGCAAGA   TCGTAGGCCCGGCAAGCG TAG CGC-CGCCGGGCA-AAGA   GGGGAAGGGGACTAC  53 37
JJN11_RS06690 1397336 .. 1397352 - -12.3  -5.94713   ACTCCAGAAAAAAAA              GGGTAGC AGC GCTACCC              TCGAAGATTGGTGAG 100 147
        gltJ NONE
        gltK NONE
JJN11_RS06675 NONE
        rihA 1394086 .. 1394107 - -13.7  -4.84529   GGATAAATGGAAAAA           GCGCCCG-CC CGG GGTCGGGCGC           CGGTCAATTAACGTG 100 33
JJN11_RS06665 NONE
JJN11_RS06660 1390197 .. 1390227 - -25.6  -3.65827   GAACCCTGAGGTAAA       CGCAACGATGCGCG AGG CGCGCATCGTTGCG       TTTTGGCACTTATTG 100 35
        leuS NONE
        lptE NONE
        holA NONE
        nadD 1384518 .. 1384534 -  -3.7  -4.08767   GCCATTTTTGTAAAA              CAGTTTT TGT AAAACAG              TGCTGGCGGGAAGTC  58 120
        rsfS NONE
        rlmH NONE
        mrdA NONE
        mrdB NONE
        rlpA 1379267 .. 1379277 -  -5.4  -2.98545   TGGTCAGAACAACGA                 CATC CGT GATG                 GAATTAAAAAAAGTG  51 139
        dacA 1377961 .. 1377991 - -13.5  -5.44721   AGTACGTCAAAAAAA       TAATAACTCCCAC ATCAG GTGGGAGTTATCA       GGTTACATAGTATAT 100 75
        ybeD 1377638 .. 1377661 - -12.5  -2.75039   CACAGAGGGGAAGCA          GGTTACCCG GCGATG CGGGTAACC           GAAAGGCGTTAAAGC  80 34
        lipB 1376896 .. 1376924 -   -14  -3.92832   AAATGGTTCAAATAA        GACTGGCTCATC AAATA AATGAGCCAGTC        GGGAAAGAGAATTAA 100 37
JJN11_RS06590 1375675 .. 1375687 -  -3.3  -3.44527   TATGGATGAGGATAA                GGCTT AAA AGGCC                TGGCGGATGACGTTG  50 16
        lipA 1374453 .. 1374468 -  -8.2  -5.93809   GTTTGATAAAAAAAA              CCGGCC TGTA AGCCGG               TTTTTTTATGGGTGA 100 63
        crcB 1372661 .. 1372677 - -13.7  -4.24123   GCAAGAATTTCAAAA              CCCGCTC ACC GAGCGGG              TTTTTTTCGTTTTCA 100 201
        dcuC 1369536 .. 1369549 -  -9.5  -5.05228   ATTAAAGCACAAAAA               GCGCC CGCA GGCGC                TTTATGCTATGGCGT 100 44
         rna 1368533 .. 1368543 -  -6.8  -4.29738   CCACATTGACGAAAA                 CCTG CTG CAGG                 ACGGAATCTATCAGA  74 152
         rnk 1367183 .. 1367202 - -12.2  -3.57561   GCGGAAGGCCGGAAA            GAGGATGC CCGG GCATCCTC             TGGGTTAAGCGCGTA  86 60
        uspG 1365269 .. 1365290 - -14.5  -3.60296   CACCTGCACTGTAAA           GAGGCTACC CTGG GGTAGCCTC            TTTTTTTATCTCACG  93 31
JJN11_RS06515 1361089 .. 1361114 -  -8.5  -3.01924   CAGTGGGTTCTAATA         CGCAGA-ATTAT AAA ATAATTTCTGCG         TATTTATTTTGTAAT  63 78
JJN11_RS06505 NONE
        mtnC NONE
JJN11_RS06495 1357852 .. 1357878 - -10.1  -2.76696   TGCGGTCTGAATAAT        GCCGGGT-GGCG CTAA CGCTTACCCGGC         CTACAAACCATTTGT  71 81
        mtnK 1355264 .. 1355290 -  -7.9  -3.53091   ACCGTCCGGTGGAAA        CCGGCGC-GCTG GTGC CTGCCGCACCGG         AGAAAATGATGGATA  62 248
JJN11_RS06460 NONE
JJN11_RS06455 1348408 .. 1348429 - -12.3  -3.04517   AGGCGGGTCGAAAAC           GCCTCTGCC GGAC GACAGAGGC            TAACATCCAAACTGC  81 50
JJN11_RS06450 NONE
JJN11_RS06445 1347148 .. 1347162 -  -2.7  -3.61398   GCTGGTCTTTAACAA               CCGTC TGGAT GCCGG               GCTGACCATCTTCTT  47 445
        fepB 1338884 .. 1338921 -  -8.3  -3.16191   CTACACCGGCACGAA   CCGTAGGCCCGGTAAGCG CAG CGC-CACCGGGCATCAGG   CCGCACGGTACAACA  64 103
        fepD NONE
        fepG NONE
        fepC 1334534 .. 1334559 - -12.5  -2.61264   TGGGGTAGCCACAAT         GCCCGGC-GGCG CTG CGCTTGCCGGGC         CTACGGTTCGTGCCA  78 153
JJN11_RS06365 1326338 .. 1326365 -  -9.9  -2.76696   GCCCGGCGCAACAAT       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTACAAAACCAAAAA  68 399
JJN11_RS06320 1312426 .. 1312456 -  -9.6  -2.79831   CCCACTTCAAAATAT       CGGACGCCTGTTTA CGC TATGCGGGCGTCCG       CTTTTCGCTCTTAGC  68 203
        arsH 1309451 .. 1309474 - -10.4  -2.73441   GACTATTGTTGAAAT          GTCCGCTT-TG TGC CAGAAGCGGAC          GTTGTTAAGCTCATG  69 67
        hypA NONE
        hypB NONE
JJN11_RS06235 NONE
        hypD NONE
        hypE 1297055 .. 1297070 -  -2.4   -4.5448   TATCCAGAAAAATAA              GAGACG AATG CGCCGC               CCGGATCAGCAAATT  63 31
        flhA NONE
        entD 1294219 .. 1294230 -  -4.4  -4.67635   TTTAAAAGGAGAAAA                GGAT CACG ATCC                 TGAGCAATTATTCAT  71 33
JJN11_RS06210 NONE
JJN11_RS06205 NONE
JJN11_RS06200 NONE
JJN11_RS06195 1289820 .. 1289832 -  -3.3  -2.75307   AAGACATCGTAAGCA                GTGCA TTT TGCCC                GGCGGCGGCTTCGCC  43 118
JJN11_RS06185 NONE
JJN11_RS06180 NONE
JJN11_RS06175 1285327 .. 1285338 -  -2.2  -2.91264   TTGTTCACCGACATA                GC-GG CCT CCAGC                CTTAACGATGAAGGT  40 27
JJN11_RS06170 1283789 .. 1283825 - -12.9  -4.90266   GCGAGTAACGAAAAA    CCGTGCCCCGTCTGGCG TAT CACCAGACGGGGCATTT    TTACCGCCGCACCCG 100 26
JJN11_RS06075 1261405 .. 1261437 - -11.4  -3.31322   CGTAAGGCGGCATAA     CGTTTGCCCCTCTCC TTTG GGAGAGGGGGAAA-G      AGAGCGATTACGGAC  82 33
JJN11_RS06065 1257978 .. 1257990 -  -3.3  -3.60792   GGCTTAATGCGCAAA                CCAGC GGC GCCAG                ATGAACCGCAGAATA  50 1
JJN11_RS06050 NONE
JJN11_RS06045 NONE
        nfsB 1254575 .. 1254601 - -15.8  -4.18197   ACGCTCTATTGAAAA         CAGGCACGCCGG AAC CCAGCGTGCCAG         TAGTCATTAGCACTC 100 32
JJN11_RS06020 1251378 .. 1251400 - -19.2  -3.72695   ATCTCCTGTATTAAA           GCAGCCGCCA TAA TGGCGGCTGC           GGATCGATTATGCAA 100 51
JJN11_RS06015 1249904 .. 1249921 -  -3.3  -4.18197   ACGCGCTATCGAAAA             GGC-CGGG CTG CGCGTGCC             GGAAGATATCGCGGT  60 219
JJN11_RS05990 NONE
JJN11_RS05985 1244704 .. 1244750 -  -7.3  -2.53903   TCCCGCAAAAAGTAG TG-CGGTTTCTGCCCGGC-GGCG CTG CGCTTGCCGGGCAGAAATAATCA AATGTGGAATGCGAC  56 23
JJN11_RS05710 1200186 .. 1200199 -  -9.5  -5.42862   ATAGGCGTAAAAAAA               CCGGC ATAA GCCGG                TTCTTTAGGAGAGAG 100 50
JJN11_RS05705 NONE
JJN11_RS05700 NONE
JJN11_RS05695 1198857 .. 1198873 -  -6.5   -5.1675   TGAGGTATGAAAAAA              GCCGC TGGTTAG GCGGC              TTCGCGATGATTGGT  87 312
JJN11_RS05685 NONE
JJN11_RS05680 NONE
JJN11_RS05675 1197993 .. 1198014 -  -2.1  -3.21099   TTGGTGGAGGAGGAA           GCGGCATCC AGTG GGTTACCTC            TTTGAGATGCAGGTC  43 204
JJN11_RS05665 NONE
JJN11_RS05660 NONE
JJN11_RS05655 NONE
JJN11_RS05650 NONE
JJN11_RS05645 NONE
JJN11_RS05640 NONE
JJN11_RS05635 1195124 .. 1195140 -  -9.4   -5.1356   CGCCAGCAATAAAAA              GGGAGC GATAA GCTCCC              GGGTGATTTGTGCTG 100 41
JJN11_RS05630 NONE
JJN11_RS05625 1193712 .. 1193729 -  -8.4  -5.03314   TTCACCTGTAAAAAA             GCCCTC GCAATG GAGGGC              TGAAAGGGGGATAAC  93 96
JJN11_RS05620 1193290 .. 1193304 -  -8.5  -4.89063   CCAGGCAAAAAGAAA               CCCGC ACTTG GCGGG               TCTGTGGAAATTTAG  88 37
JJN11_RS05615 1191814 .. 1191828 -  -7.8    -3.322   AGTTGGATAGAGCAA               CGGCCT TCT AAGCCG               TAGGTCAAAGGTTCG  59 75
        folD NONE
        ybcJ 1190435 .. 1190486 -  -9.5  -2.98823   CCCGGCCTACAGACA GAGCCCGTATGTAGGCCCGACAAGCG CAG CGC-CGCCGGGCAT-CAGACGG-CTC AGGCCGTTACGGTGA  69 24
JJN11_RS05595 1188654 .. 1188688 - -12.3  -3.32294   TGAAATGCCTGATAA    GACAACGCCTCCCGTA AGAG TACAGGAGACG-TGTC     GGACAGGCAGCTTAT  85 40
        malI 1187577 .. 1187600 -  -5.2  -2.94872   TGGAAATATAGCAGA          GCGCGGCT TAACGCAG AGCCGGGC           GTAAATCTGAATTAT  51 37
JJN11_RS05585 1186938 .. 1186977 -  -5.7  -2.60075   GGCGCCGTAAGTAAG TCCATCAGGCCCGGC-GGCG CAT CGCTTGCCGGGCATG--GGA TTATGTAGGCCGGGT  51 66
        ppiB NONE
        lpxH 1184123 .. 1184137 -  -2.9  -3.61894   AATTTGCGGGAAGAA               TTCAA AAAAA TTGAA               TGATTTTCAGTCGGG  51 46
JJN11_RS05565 NONE
JJN11_RS05560 1183506 .. 1183519 -  -9.5  -5.60993   TCTGCCACAAAAAAA               CCGCC GAAA GGCGG                TCTTTTCACAGGTTG 100 51
        purE NONE
        purK NONE
        mnmH NONE
        tesA NONE
JJN11_RS05520 NONE
JJN11_RS05515 1173649 .. 1173665 - -11.5   -5.4251   GGCAGAGATAAAAAA              GCCGCCA TAA CGGCGGC              TGACAGAGTGTTCGT 100 69
JJN11_RS05510 1172481 .. 1172502 - -12.3   -5.4251   TTCAGACAGAAAAAA           GCCCCGCTA AAAA TAGCAGGGC            AACGCGTGTTTTCCG 100 54
JJN11_RS05505 NONE
JJN11_RS05500 NONE
JJN11_RS05495 NONE
JJN11_RS05490 1167758 .. 1167770 -  -5.5  -5.40474   ATGTTGCCAAAAAAA                CTGGC TTA ACCAG                CAAAGCGATTCGTTT  93 392
        copA 1165072 .. 1165085 -  -2.3  -2.65504   CCCTGATGAAAAATT               CATGC TAGC GCGTG                GGGAGGAGTGGCGCA  39 65
JJN11_RS05475 1164097 .. 1164109 -  -5.5  -3.39556   AACGCCTTAAGAATA                CGCCT CAA AAGCG                GCTAAAAAATAGCAC  54 171
        ybaK 1163165 .. 1163175 -  -8.2  -3.83026   GTGGCGCAGATGAAA                 CCGG ACT CCGG                 TGCCTATCCGCAGTT  68 426
JJN11_RS05460 1160435 .. 1160449 -  -2.7  -3.09784   TGACCGCCAATAAAT               CAGGC GTTAT GCCGG               TTATCAGGCAGGAAT  45 10
JJN11_RS05455 1158065 .. 1158086 -  -7.9  -3.25515   AGGCAAAACGCAAGA           CCCAGCATC CGCT GTTGCCGGG            GGCGATTGCCGAGTT  59 475
        priC NONE
        rsmS 1147918 .. 1147961 -  -4.4   -4.1711   ATCATCCCGAACAAA GCGTTCGTCACCGAGCGGTT GATC AACTGGTCGCTGTCGGACAC CATCACCCGCGTGGT  64 416
        acrA NONE
        acrB 1139666 .. 1139681 - -11.8  -5.41746   AATTGTTGAAAAAAA              GGCCGC ATAT GCGGCC               TTTTTAACGGTTAAA 100 56
        tomB NONE
         hha 1138394 .. 1138408 -  -5.7  -2.54523   GTATATTTTAAGTGA               CCACA ATGTG TGTGG               ACAGTAACAGTTATG  50 220
JJN11_RS05365 1137839 .. 1137864 - -17.6   -2.7169   AAGCGGGATAAAGAT         GCCTGCCGCC GATATT GGCGGCAGGC          CAGGAGAGGTTCAGG 100 36
JJN11_RS05355 1135827 .. 1135864 - -18.4  -3.71848   CTTCTGGACGAATAA   GCGTGACGCCCGGCGG CGCTTC CCGCCGGGCGTTAAGC    GTGGCTCTCGGGATC 100 20
        tesB 1126216 .. 1126250 -  -5.7  -3.84719   ACGCGTAAAGTTAAA    GTATTGCCCGGT-GGCG CTA CGCTTACCGGGCC-TAC    GGATTGTGCTTTTGT  64 80
JJN11_RS05270 1119135 .. 1119152 - -11.3  -3.14683   AGACCCTTCCAGCAA             GCCAGAC AAAC GTCTGGC              TTTTTTTATTTTACC  76 31
JJN11_RS05260 1116458 .. 1116473 -  -2.6  -3.57263   ACTTTGACGGTTAAA              GAC-CTA TGG TAGCGTC              TGCCCGTGGCGGCGA  49 50
        queC 1115224 .. 1115246 -  -6.3  -3.96327   ATTTGCCAGGATAAA           GAGGTCGTA CCAGT TATGACCTC           TGAATCTTATAATTA  66 515
JJN11_RS05205 1104399 .. 1104423 - -17.9  -4.22652   GGACATGAGGTAAAA          CTGACCCGACC GGA GGCCGGGTCAG          CAGGCAGACTTAACG 100 35
        ampG 1102853 .. 1102899 -  -5.5  -2.88544   TTTGACCGGGACAGA TTTATTCGCCGTTATAATTTCAC AAG GTGA--TTACAACGGCAAATAAC CGTTTTTTATCATTT  49 40
        cyoA NONE
        cyoB NONE
JJN11_RS05185 NONE
JJN11_RS05180 NONE
        cyoE 1097600 .. 1097628 - -16.7  -5.59357   ATGACATTAAAAAAA        CAGCCCGCGACCA TTA CGGTGGCGGGCTG        TTGAGTGACGCTGTC 100 49
JJN11_RS05170 1097036 .. 1097063 - -15.8   -2.5785   TAATTAATGATGAAC        CAGAAACAGGTT GAAT AACCTGTTTCTG         CAGCGTTACCTATTT 100 40
JJN11_RS05165 1095461 .. 1095489 - -16.1  -3.14463   AACTTCCGCGATTAA        GAAAATGCCCGGC TAA GCCGGGCATTTTT        TCAGGCTTTCAGGGC 100 26
        panE NONE
        yajL 1092931 .. 1092949 -    -6  -3.09968   GATCGAAGCGGAAGA             GGAGAACT TCG ACTTCTCC             ATTCTTGATAAAGTG  52 448
        xseB 1091400 .. 1091426 -    -2  -3.33744   GCTGGTTCGAAAAAT         CCATCTACTCGG CAT CCGGGGTGAAGG         GGGTGGTGGCTGCGT  45 3
        ispA NONE
         dxs NONE
JJN11_RS05125 1087079 .. 1087117 -  -9.5  -4.09685   CCTGATGGTGGAAAA   CGCCGATGACGCGGC CTATTTCGT GCAGCGCCATCTGCG   CCCGACGCCGCGTAT  78 485
JJN11_RS05095 1083183 .. 1083204 - -14.5   -2.7363   TAACCAAAGAAGGGA           GCGGAACGT GAAC ACGTTCCGC            AGGGGGATTATTGCG  90 33
JJN11_RS05090 1081947 .. 1081964 - -11.3   -5.5604   TGAAGCAATAAAAAA             GCCAGCT TTTA AGCTGGC              TTTTTTGCCGGGTGG 100 127
        acpH 1074598 .. 1074608 -  -2.6  -2.94199   TACCTATCAATCACA                 TTTA TAT TAAA                 GCTGCTTATGTTTCG  43 21
JJN11_RS05045 1073836 .. 1073853 - -14.1  -5.66684   TAAGGCATAAAAAAA             GGCCCGC ATAA GCGGGCC              TTTTTCGTAAACCGT 100 46
        sbcD NONE
        sbcC 1058045 .. 1058070 - -12.5   -4.1721   ACTGACAGGGCAAAA         GCCGGGTGACGC GTA GCG-CTCCCGGC         TTACAAAACAGCAAA  95 26
        rdgC 1056054 .. 1056073 -   -15  -5.76949   TATCTGTAAAAAAAA            GAGCCGGG TTAA CCCGGCTC             CGATCTCTGGTATGA 100 45
        proC 1052310 .. 1052352 -  -3.4   -4.6902   TTATAAGGCGAAAAA TGCCGGACGT-AACCGTACC GAAGT GGC-CGCCTGACGTCCGGCT GTCGGTCAGGATTTG  69 31
        ddlA 1046678 .. 1046692 -  -2.7  -3.06696   GTCGCCCGGAAGAGA               CGACG GCGAA CGACG               CGGATTAACCGTTTA  43 30
JJN11_RS04915 1045860 .. 1045916 -  -2.4  -4.13014   TTGAGAGCCCGAAAA TCACCCG-CAATCTGACGACAGC-CTGG TTTGC CCAGCGC-GTTGAC-GATCGCCGGGCGA AGTGCATGGCGCTCA  55 42
        ampH 1041656 .. 1041670 -  -3.5  -4.81644   TAAAGAAAATGAAAA               CGCAG TAGTG CTGCA               GTCGGGCACGCTCAG  73 512
        hemB NONE
JJN11_RS04880 1035167 .. 1035179 -  -3.3  -3.81951   GCCCATATCACCAAA                CCGGA GTT TCAGG                TGCGCTGGCGCTGGC  55 216
JJN11_RS04855 NONE
JJN11_RS04850 NONE
        uhpC NONE
JJN11_RS04840 NONE
JJN11_RS04835 NONE
        fbpC NONE
JJN11_RS04825 1023321 .. 1023334 -  -2.5  -4.14013   GAAAAGTGCTTAAAA               TTAAA AGGC TTTAA                GTGAAACAGGTAATG  57 85
JJN11_RS04820 1022676 .. 1022686 -  -5.4  -3.55444   TCTTCATCCCGGAAA                 TCCT TTC AGGA                 CTGATTTGTATTTTC  56 3
JJN11_RS04815 NONE
JJN11_RS04810 1021561 .. 1021573 -  -4.1  -3.28712   GCCCGGCGCTGAGAA                TAGCG CTG CACTA                TCGGTTTCGGTTGAA  50 284
JJN11_RS04795 NONE
JJN11_RS04790 1015791 .. 1015803 -  -2.7  -2.53263   TTTAGCGTGAAGGCA                GAAAA ACG TTCTC                AGTGTCAGAGGGCAA  40 79
JJN11_RS04785 1013966 .. 1013988 -   -17  -2.90349   CCCTTAAACTGAAAT           GGCGGCGGCA TTA TGCCACCGCC           TTCCACACTGCTTAC 100 37
JJN11_RS04775 1012726 .. 1012739 -  -6.7   -2.5806   AAAGCCTGGCATAAT               GCGAT GAAA ATCGC                GCTTTCACCGATGCA  53 118
JJN11_RS04770 1010523 .. 1010536 -  -2.4  -4.10331   TTAATTAAGGATAAA               GACT TCTACG AGTC                TGCTCATCCTTCCCG  59 347
        uxaC NONE
JJN11_RS04755 1006192 .. 1006227 - -11.8  -2.85346   AACAGGGCAGGAAAG    GGTCGGCAGCGGGC GGGGCAAA GCCTGCTGCCGACG     GGGGTTAGCCGTTCA  76 30
        paoA NONE
JJN11_RS04745 NONE
JJN11_RS04740 NONE
JJN11_RS04735 1000967 .. 1000985 -  -2.2  -4.62069   GGTGCAGGGCAAAAA             GTGCCTGA CGC CCTGGCTC             TGGCAAGCCTGAGCG  66 333
JJN11_RS04725 NONE
JJN11_RS04720 NONE
JJN11_RS04715 NONE
        alsE NONE
JJN11_RS04705  996495 ..  996505 -  -2.6  -2.75343   TTGAGATGTTCAAAC                 TTAT CAG ATAA                 TGGCAGAGGTAATAA  42 50
JJN11_RS04700  996150 ..  996165 -  -4.8  -2.77118   CACAGGTAAAAGTTA              TGAATT CACT AATTCA               CTGAGCTTTTCAATA  47 7
JJN11_RS04695  994589 ..  994601 -  -3.3  -4.24711   CAAAATGTGAAGAAA                GGCGA AAA TAGCC                CTTTTTTCTGCATGG  60 423
JJN11_RS04685  991671 ..  991686 -  -2.4  -3.37796   GGTCAGCACCCAGAA              GCTGCA TGCC CGCGGC               CCGATGGGTCTTGAA  46 113
        phoE  987986 ..  988027 - -11.8  -4.72272   GCCCGGTATCAAAAA GACAATAAAAAAACCCGGC GCTTA GCCGGG-TTTTTTATCGGC ATAAATCAGAACTGG 100 31
        pepD  983858 ..  983884 - -10.1  -5.00616   TGGGGCTGTAAAAAA        GCCCGGT-GGCG CTCA CGCTTACCGGGC         CTACAAACTACTGCC 100 134
JJN11_RS04640  981764 ..  981784 -   -14  -4.41616   ATCCTCTGAAATAAA            CAGGCCGC ATCAA GCGGCCTG            TTTTTTTACTTAAGC 100 31
        dpaA  974503 ..  974526 -  -9.6  -3.34895   CTGACGGGCAATGAA          GCCTGGCA AAGAATCA TGCCAGGC           GAGTGGATCTTATTT  67 35
        fadE  970453 ..  970469 - -10.8   -5.4505   GGTGGCAATAAAAAA              CCCCGC ACGAG GCGGGG              TTTTGGCGGGCTGAA 100 46
JJN11_RS04580  969544 ..  969600 - -14.3  -3.01906   GTAACAAACAGCAGA GCCGCACCGCTCCTGTCCCTTTATGCC GAT GAGGTGAGGGGACAGGGACAGTGCGGC TTTACCCTTCAGTCA  90 34
        rnhA  966994 ..  967006 -  -2.6  -3.68351   GCGGCAGTACCGAAA                GCCC TGATC AGGC                TTCCGGTTTATACCC  51 20
        gloB NONE
        mltD  964013 ..  964034 - -11.6  -5.72622   GGGATAAACAAAAAA           GGCACCGA GGGGAA TCGGTGCC            TTTTTACATCAGGTC 100 48
        yafC  959917 ..  959937 -  -5.3  -5.31275   CTGGATGATAAAAAA            GCGATCGCG GCA CTCGATTGC            AACGATCGTCTGGTT  88 104
        metN NONE
JJN11_RS04475 NONE
        metQ  949979 ..  950002 - -14.6  -3.00946   TGCCTGCATAAATGA          CAAGACGGGC TTAC GCCCGTCCTG           AATGATATTACACAA  91 49
        rcsF NONE
        tsaA  948731 ..  948745 -  -7.1   -3.0976   TCGAAGAGTGGAACA               GGCTG ACCGG CAGCC               TGACACAAAAAAAGT  60 90
        proS  946949 ..  946971 - -17.8  -5.40474   ATCCTTGTAAAAAAA           GAGGCCCTGA AAA TCAGGGCCTC           TTACGACATCAACCT 100 34
JJN11_RS04450  946025 ..  946044 -  -7.2  -3.54447   GATAGTCGATAAAGA            TGC-AGCCT TCC AGGCTGGCA            AAGATTGTCAGTCTC  64 80
JJN11_RS04430 NONE
         rof  943688 ..  943715 - -16.4  -4.13945   AGCTGGAGTGGAAAA        CGTAACGGGCAG CAGG CTGCCCGTTACA         CGGGATCAGGACTCG 100 31
         map  919077 ..  919092 - -11.8  -5.17353   ATAGCCATTAAAAAA              GCCGGC ATTT GCCGGC               TTCTTATCATGCGTC 100 32
        glnD NONE
        dapD  915474 ..  915489 - -11.8  -5.76633   TCAGATATAAAAAAA              GCGGGG TCGC CCCCGC               TTTTTGTTATACCCG 100 42
JJN11_RS04305  914953 ..  914969 -  -6.5  -4.37092   ACCGGGCCTACAAAA              CCCGG GAGTAGG CCGGG              TAAGGCGAAGCCGCC  74 61
        mtnN NONE
        btuF  908927 ..  908944 -  -4.1    -3.767   TATCCAGCCAGTAAA             CGAGCAT CGTA ATCCTCG              AGAAATTAGTGGCTC  55 31
JJN11_RS04275  908232 ..  908250 -  -5.3  -3.19246   CCAACCCGAACGCAA            CCAGCACC TGCG GGTG-TGG             TTCTTCGTTCAGCAT  52 85
        hemL  904922 ..  904951 -  -6.4  -5.11613   AGAGCAGGTAAAAAA      TGCCGGGT--GGCG GCTT CGCCTTACCCGGCC       TACGGTTCGAGGGTT  87 85
        thpR NONE
        sfsA NONE
        dksA  891652 ..  891675 - -18.2  -2.76265   AGCGCAGAAAGTAAT          CAGGCGGGAG AGAA CTCCCGCCTG           TGGTAGCGTCATGAC 100 51
      gluQRS NONE
        pcnB  889282 ..  889299 -  -4.8  -2.88544   GCCGATGGCGATATA             GGCCAGC GTCAT GC-GGCC             CCTTCGCGGCGTGGA  47 16
        folK  888768 ..  888800 - -10.1  -3.07291   AATGATTTTACGTAA      CCGATTAACCATAAA TAT TTCATGGTTAATCAA      CGGAAATTTACTGTT  72 39
        panB NONE
        panC  887003 ..  887014 -    -3  -3.75897   AAGTGGGAAGGGAAA                CTAA TCCA TTAG                 CTATCTATCAGCTCA  51 45
        panD  886410 ..  886426 -    -5  -4.12198   GATAATGCGGTAAAA              GCGGCG AATGA CGCCGG              TTTTCATCTGGCGGT  64 167
         can  882220 ..  882237 - -11.3  -4.72272   CCTGCGGACTAAAAA             CGGCAAC TTGC GTTGCCG              TTTTGCGTTTACTTG 100 34
JJN11_RS04150  878954 ..  878979 - -11.1    -5.626   CACGGTATAAAAAAA         GCCCGGT-GGCG CTA CGCTTACCGGGC         CTACGTGAGCTCGAA 100 86
JJN11_RS04140  876848 ..  876873 - -12.7  -3.16154   CAACATCATAGCTAA         CTATGACCGTG GTTG CACGGTCATAA          ATTCAGCAAAGGGGC  84 54
        speE NONE
        speD  875106 ..  875127 - -13.1  -2.92326   GAAGCAGAAATAGTA           TCAGGAGCA TCCC TGCTCCTGA            CGCATCTTATACGGT  83 32
JJN11_RS04115 NONE
JJN11_RS04110  869302 ..  869341 -  -8.6  -3.73775   CGGATGCGGAGCAAA  CACCTTATCCGGGC TTGTTTATAATC GCCCGGGTAAGGCG   AAGCCGCATCCGGGC  71 48
        aroP  859729 ..  859756 - -21.4  -3.74526   TGAGGAAGGTAACAA        CCCTCTGCGTCC GGGA GGACGCAGAGGG         GAGAGGATTAGTGCG 100 33
JJN11_RS04075 NONE
JJN11_RS04070  857228 ..  857242 -    -7  -3.65351   GCACGCTGATCTAAA               CCAGCG CGC CGCAGG               CTTCAGAGTGTATCA  67 28
        nadC  854793 ..  854804 -  -7.2  -2.73338   AGAAGGGTCGGAAAT                CGGG GGAG CCCG                 GCCTCGGCAGACCGG  56 52
        ppdD NONE
        gspE NONE
        hofC  851338 ..  851360 -  -4.8  -4.66264   GAAAACGGTGAAAAA           TTCATGCTGT TCT ACGGCATGAG           CTCTGAATCGGCCAT  72 292
        coaE NONE
        zapD NONE
        yacG  848292 ..  848309 - -12.7  -4.35581   GTAAAACACGTAAAA             GGCGCAG ATAT CTGCGCC              TTTTTTATGGATGCA 100 474
        leuA NONE
        leuB NONE
        leuC NONE
        leuD  816039 ..  816064 -   -12   -5.7946   GTCTGAATAAAAAAA         GAGTCCATTG ACTGTG CAATGGACTC          TTTAGCGTGATTAGC 100 36
        sgrR  812713 ..  812739 -    -3  -3.59262   TTTGAGAGTGGCAAA         GGATTTTGAG CAACAGC CTCAAATCCC         TTCGCCGGCGTTATC  49 140
        thiB NONE
        thiP NONE
        thiQ  808946 ..  808972 -  -7.2  -4.78157   ATGAAAAAGAACAAA         GCCCTGCTCGAT AAA ACCGAGCATGCC         CTGCATCAACACAGC  84 488
        araB NONE
        araA  804095 ..  804114 - -12.8  -5.14563   TCCTCCAGGAAAAAA            GGCCCGCC CTGC GGCAGGCC             AAAGGTTCCCCTGTT 100 39
        araD  803249 ..  803269 -  -6.1  -5.18371   TCTCATAAAACAAAA            CCAGGCC TGATTAT AGCCTGG            TTAAGGGGGGGTTGC  89 137
        polB  800775 ..  800809 -  -2.9  -3.09803   TAATTGCAGGCAATA    GTTCAACCACCGTTCA GGAA TGA-CGGTCGTCGAAT     AATGGGTCCGGGAAT  45 85
        rapA NONE
        rluA  797122 ..  797159 -   -12  -2.66899   CTTTAAGTAAGGAAG   CGGTTGGCCCGGCGGCA AGGGG TGCTGCCGGGC-AACGG   ATCAAAAGTCTGCCG  78 27
        lptD  793670 ..  793680 -  -8.2  -3.43071   TTCCATATCAATTAA                 CCGC AAA GCGG                 ATTACGTGTTAAATC  66 48
        surA NONE
        pdxA NONE
        rsmA NONE
        apaG NONE
        apaH  788998 ..  789008 -  -4.6  -3.16421   GTAATAAGCAGCCAA                 CCCG GCA CGGA                 CGATCGTGTTGAGTG  47 344
JJN11_RS03755  783022 ..  783043 - -14.5  -5.66684   TAACTGATAAAAAAA           TGCAGTGGC CTGC GCCACTGCA            TCGGTTGTTGCGGTA 100 47
JJN11_RS03725 NONE
JJN11_RS03720 NONE
JJN11_RS03715 NONE
JJN11_RS03710 NONE
JJN11_RS03705  771274 ..  771292 - -17.4  -3.17723   CCATCCGTAACGTAA             GCCGGGGC ATC GCCCCGGC             TCGTTTAACCGGCAA 100 30
JJN11_RS03690  768649 ..  768671 - -12.1  -4.64144   AATAAGGTTTAAAAA           TGCCAGTCA TCAGG TGACTGGCA           TTTTTTCATTCAGAT 100 12
        rpsT  762216 ..  762230 -  -8.5  -5.66684   GAAGGCATAAAAAAA               CCCGC ATTAA GCGGG               TTCTTTTAAAACAAG 100 57
        satP NONE
JJN11_RS03625 NONE
JJN11_RS03620 NONE
JJN11_RS03615  752618 ..  752636 -   -16  -4.34402   CGCGGGATAGCAAAA             TGCCGGGC TGG GCCCGGCA             TTTTTATGAGTGCGA 100 29
JJN11_RS03595  747833 ..  747843 -  -2.4  -5.86061   CTTTAGCAAAAAAAA                 CGCC CTG GGTG                 ATCGATGGCTGTTAT  88 37
        yaaA  746988 ..  747009 - -15.9   -2.5076   AAGCATCACTAAGAT           TTCCCCGCC GGGC GGCGGGGAA            GGTGATTACTGCTCG 100 31
        arcA  739281 ..  739296 - -11.8  -6.23545   TGGAAATAAAAAAAA              CGGCGC CAGG GCGCCG               TTTTTTATGACTTAT 100 49
        robA  733678 ..  733690 -  -5.5  -2.78776   AACGTGCCAAAACAT                TGGGC ATC ACCCA                CATCATCGCCAGCGA  47 521
        yjjX  732685 ..  732722 - -14.1  -3.14051   TCAGTCTTATGAACA   GGATCTGCATCTGCCGC TGCT GCAGCTGATGCTGACCC    CCGACGAGCGCGAGG  83 280
        ettA  728681 ..  728700 - -13.6  -5.03994   CGGCACACATAAAAA            CGGCAACC CGTG GGTTGCCG             TTTTGCCTTTACTTG 100 34
JJN11_RS03480 NONE
        lplA  722988 ..  723009 -  -2.3   -4.2828   GGTGATGGATGAAAA           GCGGATAAGT GAA AATT-TCCGC           ACGATCGCCGCGGGG  62 162
JJN11_RS03445 NONE
JJN11_RS03440  714477 ..  714488 -  -3.6  -3.53012   CGCTGGTGCTGGAAA                CCGA TGCC CCGG                 ATATGCCGCTCAACG  51 175
        rsmC  707069 ..  707093 - -12.2  -4.57073   TATTTGCTGCAAAAA          TGGCCTGAAC GGGCG GCTCAGGCCA          GCGGGAGACGTTACT 100 36
JJN11_RS03390 NONE
JJN11_RS03385 NONE
JJN11_RS03380  706526 ..  706546 -  -2.4  -4.06687   ATCTGGCATAAACAA            CTGCGGCA TTTCG TGCTGCTG            CCATCATGTGTTGCG  56 122
        fhuF  705384 ..  705403 - -13.6  -4.78029   TTAATAAAAGCAAAA            CGGCAACC CTTG GGTTGCCG             TTTTCATCTATTGGA 100 50
JJN11_RS03360  703212 ..  703241 - -11.5  -4.21676   ATAACCCATGCAAAA       GT-CTGCGCCAGAA CGG TTCTGGCGCGGGAC       TTACAGACAAACGTC  91 26
JJN11_RS03345 NONE
JJN11_RS03340 NONE
JJN11_RS03335 NONE
JJN11_RS03330  698945 ..  698982 - -12.7  -2.73771   GTAGCACAGAGAGGA   GGGGGCAGGCAG-GGGTC TGA AACCCGCTCCCTGACCCC   CTGAAAAATCAGGAG  81 34
        dnaT NONE
        dnaC NONE
JJN11_RS03315  696985 ..  697006 - -12.9  -3.92522   GGGGAAGGGGAGAAA           CGCCGCGGC AGCC GTCGCGGCG            TGTCGGGGATCAGGA  93 35
        opgB  694242 ..  694255 -  -3.1  -3.45784   TTCATAAGAAAGAGA               CCACCA TGA TGG-GG               AGCCGCAACGCCACC  47 279
JJN11_RS03300  692353 ..  692365 -  -3.3  -4.67982   CGGTACTTAATAAAA                GACCG TCG CGCTC                TGGTTAATGGAGCGG  69 4
JJN11_RS03295  690671 ..  690692 -   -13  -3.05844   CTTCTGATGTGAATA           GCGCCCTG TTCAGG CAGGGCGC            TGTTTTTGTGCCCGG  83 108
        hpaG NONE
        hpaE NONE
        hpaD NONE
JJN11_RS03265  684193 ..  684214 -    -5  -3.17075   GGCCCGGTAAGCGAA           GCGCCACC GGGCAT GAGGGCGC            GCTACTTAAACAAGG  50 27
        hpaH NONE
        hpaI  682021 ..  682033 -  -9.1    -3.002   ACCAGGTGAGATAGA                CCAGG ATC CCTGG                CAGGAAACCGGCTTC  66 440
        hpaA  679914 ..  679925 -  -5.8  -3.36341   AAGAGCCGGGAAACA                CAGC GCTG GCTG                 AAAGGTAACCCAAAG  57 262
JJN11_RS03230  676684 ..  676705 - -11.7  -4.25606   GAATAGCTAAAAGAA           GAGGAATAC AGAC GTATTCCTC            AAAATTCACTTGAGT  91 61
JJN11_RS03225  675634 ..  675648 -  -8.6   -2.6914   CACTCGGCACACAAT               CATGAG TTC CTCATG               GGTTAACGGACGGTC  61 146
JJN11_RS03210  674296 ..  674317 - -14.5  -5.63103   CTTTAATTAAAAAAA           CCGCTGTTG GTTA CAACAGCGG            CCTGTATAAGGGAAG 100 47
        radC  673705 ..  673719 -  -6.4  -2.70932   TCCCTTCCTGAACCA               GCCTTG CCC CAAAGC               GCAGGATGACATCAC  53 108
        hpaB NONE
JJN11_RS03185  669623 ..  669646 - -13.8  -5.63504   AATTGGATAAAAAAA          CGCCAGCTGC GGGT GCGGCTGGCG           TGAGGGGGCTTATTA 100 38
JJN11_RS03180  668799 ..  668809 -  -5.4  -3.08032   TTCTCTTCAAAATTA                 TTGC ACG GCAA                 GCAGGTTGCTGGCGG  51 12
JJN11_RS03175  666982 ..  667005 - -10.2  -3.79874   GCCGATATAACAGAA          CGAGCCCGCC CTTA AGCGAGCCCG           TCAGGAGGGTTAGTT  82 35
JJN11_RS03170 NONE
JJN11_RS03165 NONE
JJN11_RS03160  664073 ..  664085 -  -4.8  -3.79445   AAGTAGGAATGGAAA                CCCT AATAA AGGG                AGCTATGTGTCTCTG  59 223
JJN11_RS03155 NONE
JJN11_RS03150  660562 ..  660574 -  -6.3  -3.20751   TTGAAGAATGTAATA                TATCC TTT GGATA                TGCTGTGCTATTAAT  57 320
JJN11_RS03145  659820 ..  659833 -  -3.7  -3.08032   CGCCGTCTAAAATGA               TGGCG CTAG CGCCG                ACCCAAACATCCTTC  45 17
JJN11_RS03135  658984 ..  659018 - -12.5  -3.04625   TAAAGTAATTATATA    TGACCTATTATTAACG CTAA CGT-AATAATAGGTCA     GCAGAAGGAGTGACT  81 336
JJN11_RS03130  657720 ..  657738 - -10.4  -2.64144   TTCTCAGTCAAATAG             CGAGTAAT AGC ATTACTCG             TGTTCATTGTGAATT  69 73
JJN11_RS03125 NONE
JJN11_RS03120 NONE
JJN11_RS03115 NONE
        rfbB NONE
        rfbD  651630 ..  651652 - -10.6  -4.07568   TCCGTGTCGCTAAAA           CAAGGCACGC ATA GCATACCTTG           ATGCGTTTACTTTCC  85 32
        rfbA  650608 ..  650622 -  -9.2  -2.94924   GCCTGATTGATAAAT               GGGGCA TGA CGCCCC               TGGTGTTAATGGTGA  66 41
        rfbC  650009 ..  650030 - -14.4  -4.46212   CTGTGCATCAGAAAA           CGCCCCGC GTCACT GCGGGGCG            TGGGACTCAGAAGTA 100 32
JJN11_RS03090 NONE
JJN11_RS03085 NONE
JJN11_RS03080  645487 ..  645513 -  -5.1  -2.91144   TGAGCGGTCAAAGGA         GAGGGCGAG TGGTTCAGG CTCGCCGTC         AGAGGAGGGAATTGT  49 70
JJN11_RS03075  643112 ..  643137 -  -6.8  -5.04597   ATCCAGATAGAAAAA         GCCCGG-TGGC GCGCA GCGATCCGGGC         CTACAGTACCGTTGT  87 75
JJN11_RS03070 NONE
        yjiA  641892 ..  641910 - -14.6  -2.85999   GTAGCGGATAGCAGA             CCCTCTCC GCA GGAGAGGG             CGCCATCAGGCGTTA  90 38
JJN11_RS03055  640013 ..  640031 - -11.7  -3.87815   CTTTACCGGTACAAA             GGCGGCA GCGGA TGCCGCC             TTTTTTATGCTTTGG  88 87
JJN11_RS03030 NONE
JJN11_RS03025  635355 ..  635371 -  -2.1  -2.53911   CGAAGGGGCAAGGGA              GCGGGCA TTT TCCCCGG              TGGCGCTGCGCTTAC  39 113
JJN11_RS03020  634012 ..  634027 - -11.8  -3.33261   GCGTAATGCGCAGAA              GGCCGG CGAT CCGGCC               TTTTTTTAGCGGCCC  82 31
JJN11_RS02980  624645 ..  624686 -  -7.1  -2.83382   TATCAAAGGTTAAAT TGCCGCTGCTCAGCTGCTC AGCT GCTCAGCTGCTCAGCTGCA  CCGGCGCGGTCACGG  57 9
JJN11_RS02975  622033 ..  622059 -  -9.4  -4.82901   CCGGGCCTACAAAAA         GTAGCCGCATAC TCT GTATGCGGCTTG         TTTGTTTTAGAAGTT 100 32
JJN11_RS02950  617748 ..  617765 -  -5.5  -3.33744   GCGCCCGGGAAAAAG             CGGCG CTGGCCTT CGCCG              AAGCGCTGACGCAGA  53 215
JJN11_RS02940  615623 ..  615633 -  -6.8  -4.57837   AGATGGCGGTAAAAA                 CTGC CAT GCAG                 TTCCTGTTTTAGACG  77 389
JJN11_RS02930  614061 ..  614081 -  -9.7  -3.08046   TTCTGATGTGAAAAT            GCCCGGT GGCGCTT ACCGGGC            CTACAAAAGAGTCGA  69 93
JJN11_RS02910  610040 ..  610069 - -24.3  -4.02424   ACGAATGATCACAAA       GGCGGCGCGGGGC ACAG GCCCCACGCCGCC        AACTTTAAGCGGCGA 100 30
JJN11_RS02900  608013 ..  608034 -  -7.9  -3.14344   CACCGTGGTGACTAA           CTCCCCGGC CATC GCCGCAGAG            CTGCTGCGTCACCCC  57 397
JJN11_RS02890 NONE
JJN11_RS02885 NONE
JJN11_RS02880  605721 ..  605752 -  -3.6  -2.72991   TGATAGTCGCAAGGA      CGATCCCCTCTCCTC TTT GGGGAGAGGGT-TAG      TTTTGTAGGCCGGGT  42 114
JJN11_RS02875  604361 ..  604381 -  -5.3  -2.61695   CTCACCCGCAAACAG            GATCCGGCC TTT GCCCGCATC            GATCTGCACCATCTG  46 497
JJN11_RS02845 NONE
JJN11_RS02840 NONE
JJN11_RS02835 NONE
JJN11_RS02830  592510 ..  592523 -  -5.9  -3.93556   ATGTAGGTAATTAAA               GCGCC CGGC GGCAC                TGCGCTTGCACGGGC  64 92
JJN11_RS02825  591407 ..  591417 -  -2.4  -3.31144   CCCGGACGGGCACAA                 GCTG GAA CTGC                 ACGTGGGGGATCTGG  44 333
        csiD NONE
        lhgO NONE
        gabD NONE
        gabT  582539 ..  582558 - -11.4  -2.60496   CTGCTCCTTAAAGAC            TGCCCGGC TCGC ACCGGGCA             TAAAAATTAACCCTG  75 32
        csiR  581691 ..  581708 -  -2.7  -3.61015   AAAGTAAGAACAAGA             CCTATCCG TAC CAGAT-GG             AAGTACGGACCCCTG  49 153
JJN11_RS02780  580917 ..  580937 -  -6.1  -3.21099   CCTTCTGAGGATGAA            GAGGCCG GAACGAT CAGCCTC            ATGCCGCTGGATAAG  55 450
        argF  574841 ..  574862 - -10.1   -3.1268   GGATAATTTGAAAAG           CAGGAGGGC CAAA ACCCTCCCG            TTATTTAAACGCAAC  73 43
JJN11_RS02735  573439 ..  573450 -  -7.2  -3.30441   TACGAGCCGGTATAA                CGGC TCAG GCCG                 GGTAGCCCAGCGCGC  62 18
JJN11_RS02705  566346 ..  566363 - -12.7  -5.75342   GCCGGGCAAAAAAAA             GCCCCTC AAAT GAGGGGC              TTCTGGAATAGGGAT 100 13
        pyrB NONE
        pyrI NONE
        ridA  564417 ..  564432 - -10.4  -5.92399   TAAGAAAATAAAAAA              GGCAGC CCAG GCTGCC               TTTTGCATATCAAAA 100 48
        gbpA  562653 ..  562676 -  -9.6  -3.86015   TATCCGCTGGAGAAA          CTG-CTGCGCG CGA CGCGCAATCAG          TAGTCGGTGAAAATG  79 171
        treR  556087 ..  556100 -  -3.8  -4.36554   GAGGATCACAATAAA               GCCT TTTTTG AGGC                TCAGGAGAGGGTGGC  65 26
        treB  554521 ..  554534 -  -3.8  -3.53091   ATGCGTTCCTGCAAA               TGCG AAGGGG CGCA                ACTGCGCCCCGAAGA  52 44
        treC  552811 ..  552844 - -11.8  -2.94924   TTTCCAGCCATAAAG    CGTGCGCCGGACAACC GTGC GGT-GCCCGGCGCA-G     AAGGTTATGCCTGTA  78 30
        nrdD  550246 ..  550273 -  -7.6  -2.84298   CATAGCGTATAACCA        CGCCGGGTGTCGC GTA GCGAT-CCCGGCC        TACAGTGTGAATGCG  59 92
        nrdG  549371 ..  549387 -  -3.6  -4.08216   GTATGTCGCGGAAAA              TGGCCG CATGC CGGTCA              AAACCGTGACGGTAA  60 407
JJN11_RS02585  539702 ..  539712 -  -2.4  -4.41047   AGGCGTTAACCAAAA                 TGCG TAC CGCG                 GCGGTAGACGCGCAA  64 307
JJN11_RS02570  537221 ..  537247 - -10.1  -5.58454   CGCAGAGTAAAAAAA        GCCCGGT-GGCG CTAG CGCTTACCGGGC         CTACTCGTTGCACGA 100 95
         fbp  534624 ..  534649 - -17.7  -4.62904   AAATATCTGGAAAAA         CAAAAGGGGCC AGTT GGCCCCTTTTG          GTCAAACTCAACAAT 100 40
JJN11_RS02555  534055 ..  534077 -    -9   -3.7829   ACCAGATGGACGAAA           CCGCGCAGCA AAA TGCGGCGCTG           GTCCAGCAATCTTCC  69 99
         ppa  527057 ..  527074 - -12.7  -5.76633   GCACAGATAAAAAAA             GCCCCGA CAAG TCGGGGC              TTTTTTTCACACGTT 100 46
        msrA  520219 ..  520238 -  -4.2  -4.28254   CGTCAACAGGCAAAA            CCGGCTTA CTGT TATGCCAG             CTGAGGCGGCAGGCA  62 17
JJN11_RS02500  518671 ..  518689 -   -16   -4.7261   ATGCAGTAAAAGAAA             CGGCTCCC GAT GGGAGCCG             TTGATGTTTCTGGTT 100 40
JJN11_RS02490  517219 ..  517239 -  -4.6  -3.37283   CAAAGCGTGGAAAGA            GGAGTGCG GGGTG CGCAACCC            GATCCAGGTGCGTGA  51 338
JJN11_RS02480  514227 ..  514237 -    -4   -3.6959   ACACTATCACTCAAA                 CTAA CTT TTAG                 TAAGTACGTACAAAA  55 471
JJN11_RS02470 NONE
JJN11_RS02465 NONE
JJN11_RS02460  511299 ..  511327 - -12.4   -2.8806   AAACCTTCTGACAGA       GGCCGGGT-GGCG CTAA CGCTTACCCGGCC        TACGAAACGTATGAC  80 79
        ytfE  508628 ..  508644 -  -2.2  -4.16842   TTTATCGGTAAGAAA              CGTATG GCTGG CATGCG              TTAATTGTGTTGTGC  57 120
JJN11_RS02435  505401 ..  505434 -  -7.3  -4.22346   TAAAGTCAGTGAAAA     GCAGGCCCGGTAAGCG TTA CGC-CACCGGGCGAAC     CGCTATCTGGCGCGG  73 28
        yjfY  502185 ..  502201 - -10.8  -6.60239   AAAAATAAAAAAAAA              GCCCCC GGGCA GGGGGC              TAATAAGACTATGAC 100 83
        ulaG  496276 ..  496286 -  -2.6  -2.94337   GATTTTAAAAGATGA                 TATT TGA AATA                 GCCTGAAATTACTAA  43 88
        ulaR  495490 ..  495506 -  -4.3  -3.58343   GCCAGCACCTTTAAA              CGCGCAG GAT CTTCACG              CCCTGATCTTCCAGT  52 4
        bsmA  494243 ..  494254 -  -5.8  -4.34402   TTGTGGACAGGAAAA                CGTC TATG GACG                 CAAAGCAGTGTAAAT  72 60
        yjfN  493832 ..  493850 -    -6  -4.93696   TGTAAAGATTAAAAA             GCCACT CTTTTTT AGTGGC             TTTTATTGACGATTT  81 41
JJN11_RS02345  491562 ..  491576 -  -7.1  -4.72986   CAGCTCCAGCAAAAA               CTGCG TAAAC CGCAG               GAGGCGCAGGGCAGG  84 218
JJN11_RS02335  488238 ..  488248 -  -2.4   -3.6422   GATCGTGCCAAAAGA                 TCGC TCC GCGC                 AGCTCAACGCGACGG  51 448
JJN11_RS02310  482703 ..  482720 - -12.7  -4.60889   AAGCAGCGTTAAAAA             TGGCGCC ATAA GGCGCCA              TTTTTTTATCTTAAT 100 36
        queG  470971 ..  470987 - -10.9  -2.62616   TCAGTTGGTAGAGCA              CGACCTT GCC AAGGTCG              GGGTCGCGAGTTCGA  66 329
        rsgA NONE
         asd NONE
        mscM  464041 ..  464061 - -10.3  -3.52073   TTTCGAACAGGATAA            CCGCAAGCG TGC CGCACGCGG            CCTGCCGCAACAGCC  71 271
        frdA NONE
JJN11_RS02210 NONE
        frdC  460022 ..  460032 -  -2.4  -3.27475   CTCCTTACCAGAACA                 GGGC TAC GCCA                 AGAATCACCACGGTT  45 4
        frdD  459652 ..  459666 -  -3.4  -3.65001   GAGATCACATAAAGA               CGACGG CAA CCAGCG               TGACGACGCTCAGAA  53 0
JJN11_RS02195  458619 ..  458631 -  -6.3  -3.30159   TCAAGCTCTTCACAA                TAGGA AAT TCCTA                TCCCTTACAGGACGA  59 417
JJN11_RS02185  457711 ..  457727 -  -2.1  -2.73875   CCGCCTGTAACACCA              CTCGCGG TGT CGGTGAG              GATATCTCCTCTGGC  39 148
        epmB  455429 ..  455446 -  -3.3  -2.89608   ACCCAAAGCATGAGA             TCCCGCT TTTT AACGGGG              TGGAGCGTGCGTCGG  43 274
JJN11_RS02155  453678 ..  453703 - -13.3  -3.18571   TTTCTCAAACAGAGA         GAGCCTGAGCG CATA CGCCCAAGCTC          TAAAAGGATATTACT  88 36
JJN11_RS02150  452541 ..  452553 -  -3.3  -3.33361   CAGGAATTACATTAA                GGTTG GCG CACCC                TTGCTTATTTTCCTG  48 443
JJN11_RS02140  449314 ..  449330 -  -5.2  -6.06723   TTTTCTAAAAAAAAA              GAGATT TTCAC AATCTC              TTTTTTTTAATTTTG 100 48
JJN11_RS02135  448722 ..  448739 - -11.3  -4.24342   TGCTTTAGTAATAAA             GGCCTGA ATTA TCAGGCC              TTATTTAAGTATAAA  87 82
JJN11_RS02130 NONE
JJN11_RS02125 NONE
JJN11_RS02120  443896 ..  443919 - -12.4  -4.42976   GCAGAAATGAACAAA          CCCCCGGTCA GAAA TGATCGGGGG           TTTTTCTTTTGGTCA  95 510
        yjeH  440086 ..  440110 -  -6.3  -2.57014   AATGCAGCAGAAGAT          GGCCGCCGG GGAGAGT CCGGCAGCG          GAGATGGTCAAAAGC  48 376
        aspA  438086 ..  438105 - -13.6  -5.93252   CCTAAAAACAAAAAA            GGCACGTC ATCT GACGTGCC             TTCATGAAGTTTAAC 100 49
JJN11_RS02085  436663 ..  436683 - -18.3  -3.39895   CTGCTCATTAATGAA            TCGGGCCGC TAA GCGGCCCGA            CTTTAACTCTTTTTA 100 55
        cutA NONE
JJN11_RS02075 NONE
JJN11_RS02070  433689 ..  433724 -  -3.8  -2.96274   CCGGGCATAATTATA    CCCGCTTCACCGC-GCG TGC CGCGGCGCTATTGCAGG    TTATCAATCCCAAAA  44 276
JJN11_RS02055 NONE
JJN11_RS02050  430861 ..  430889 - -15.4  -2.50563   AAATAAAAGAATTAC       GTTC-CCCGCACC TTCA GGTGCGGGTGAAC        AACCACTAACTTTTT  95 31
JJN11_RS02040  428965 ..  428989 -    -3  -3.91541   TCATGAAAGCAACAA         GTTACCATCCAA TGT TTGG-TGGTA-C         GTATCACATCATCGA  54 507
JJN11_RS02035 NONE
JJN11_RS02030 NONE
JJN11_RS02025  425152 ..  425171 -  -9.2  -4.78149   CTTAGAATGCAAAAA            CGGACCAC CATG GAGGTCCG             TTGATATGAATTTGG 100 91
        istB  420134 ..  420152 -  -8.9  -4.72986   GATGTGTATTAAAAA             CCCTGTA GTAAA TACAGGG             TCAACAAGTTATTTT 100 347
JJN11_RS01995  419633 ..  419650 -  -7.7   -6.2845   AAGGACAAAAAAAAA             GGCTACC TGGG GGTAACC              TGACTAAAACAGTCA 100 210
JJN11_RS01985  416963 ..  416983 -  -2.5  -3.08294   CGGGACAGAAATAAC            TACCGGACT GAC AGCCAGATA            TAAATCTTCTGCTGC  42 99
         def  416290 ..  416304 -  -8.5  -3.61922   AACAGGGACTTCAAA               GCCCC TCTCT GGGGC               GTTGAGAGGACTCAT  71 149
JJN11_RS01935  404532 ..  404546 -  -2.8  -3.09933   GCTCAAGTTATGGAA               TGACAA ATC TCGCCA               GAGCGCCGATGTTAA  43 353
JJN11_RS01920  400508 ..  400541 -  -8.2   -2.9294   GAGAGCATTGATAGA     TCTGGCTCCGCGACA TGATC TGTCGCGGAAC-AGT     CTTGTATGTTGCCGC  63 105
JJN11_RS01915  399706 ..  399717 -  -3.6   -4.3295   CTGAATAAAACCAAA                CCGA CCAC CCGG                 ATCGCTGGTTGGAAA  65 521
JJN11_RS01895 NONE
JJN11_RS01890  394094 ..  394114 - -12.7  -3.09516   TCGCGGATGATTCAA            GATCCACTT ATT AAGTGGATC            TTGATAGCATCCTGT  83 40
JJN11_RS01855  387215 ..  387225 -  -6.8  -3.53012   CCGGCGGTTGGGAAA                 GGTG GAG CACC                 ATCACCTTGTAAATC  61 421
JJN11_RS01850  386161 ..  386180 -    -5  -3.91072   GTAAATTTGCATAAA            TCACCTCT TATA AGAAGCGA             AGCGGTTGGTCAGCC  59 6
JJN11_RS01845 NONE
         eno  384319 ..  384335 -  -8.7   -4.3129   CAGCGATCAGGAAAA              CCAGACA GTT TGCCTGG              ATCCCCGTTGCTGTT  80 117
JJN11_RS01835  383411 ..  383432 -  -3.7  -2.82834   CAGGGCACCATCAGA           CCGTCATTC AAGG GAATAACGT            GCGGTGATGGCCCGT  43 7
        crcB  382913 ..  382935 - -12.8  -3.53091   ACCCTTCTCCGGAAA           TACCTGACCC GGC AGGTCAGGTA           TGTTGTTATGGCGAT  89 95
JJN11_RS01825 NONE
JJN11_RS01800  375257 ..  375268 -    -3  -2.79327   CCACTCCACTGAAAG                TGTA ATAG TACA                 TGCTCCTGCTCGTAA  42 179
JJN11_RS01720  358394 ..  358413 - -13.6    -5.011   AGTGAAATAACAAAA            CGGCAGCA CTTC TGCTGCCG             TTCTCACACCGGTAA 100 120
JJN11_RS01715  357764 ..  357795 -  -2.2  -3.61178   GCCAGGTAGCTGAAA      TGACGACAGCATGC TGAC ACGCCCTGTCATCA       GTCGTGCCGTAGCGA  47 92
JJN11_RS01710 NONE
JJN11_RS01705 NONE
JJN11_RS01700 NONE
JJN11_RS01695  355752 ..  355766 -    -7  -3.53444   TGATTTTGCTGTAAA               CCGGGG ATG CGCCGG               GTTACCCGGCGGTCA  64 27
JJN11_RS01690  355158 ..  355183 -  -2.4  -3.15544   GGGGATCCGGATGAA         TCTGGGGCAC ACAGGA ATGCCCCGGC          CGGATAATAAGAGGA  43 49
JJN11_RS01685  354880 ..  354902 - -15.6  -5.18371   TGGCATAAAACAAAA           TGCCCCGCTC AGT GAGCAGGGCA           TCAGTGGGTTAAGTG 100 26
JJN11_RS01680  354545 ..  354582 - -20.1   -3.9279   ATTTAACGGCATAAA   CAAAACAGCCATGCTCC TGTG GGAGCATGGCTTTTTTG    TGTGGTCGCTATTGG 100 57
JJN11_RS01675  353683 ..  353699 -  -6.5  -3.15544   GGGTATTTGCAGGAA              TGTGCTG CAT CAGCTCA              GTGCCTGCTGCAGTT  57 18
JJN11_RS01670 NONE
JJN11_RS01665 NONE
JJN11_RS01660 NONE
        radC NONE
JJN11_RS01650  351995 ..  352009 -  -5.6   -2.6296   TAAACGTGAATTAAT               TCAGCG TAA CGCTGC               GTAATACGACGTACG  48 6
JJN11_RS01645 NONE
JJN11_RS01640 NONE
JJN11_RS01635 NONE
JJN11_RS01630  350404 ..  350427 -  -9.5  -4.18042   TTTATATAAAGCAAA          GCGCCAGCC GGTAAG GGCTGGGGC           TTATAGGTGTGTGGT  83 57
JJN11_RS01620  349264 ..  349280 - -10.8  -5.04601   TCCAGAAAGCAAAAA              CCCGCC TTTTG GGCGGG              TTCTTTAAATAGTGG 100 30
JJN11_RS01610  346214 ..  346225 -  -5.8  -4.58283   TAACGCCCTCAAAAA                GCCA GCAG TGGC                 CCGCGCACTGACGTG  75 117
        galE  344825 ..  344858 -  -6.8   -4.7254   ACGCCTGAGCAAAAA    GAGGAGATCGAGAGCG CGAT CG-TCTCGATCACC-C     TGGCGTCGCGGCACC  84 347
        kdgT  329690 ..  329700 -  -8.2  -3.38727   AATAAGCCGAAGGAA                 CCGC GAA GCGG                 CGATTTTCTTTGCCG  66 214
JJN11_RS01530  325229 ..  325267 - -10.9  -3.30124   TTGTAGGCCTGATAA  GCGAAGCGCATCC-GGCA AAAG TGCCCGGCGGCGCTGCGC   TTGCCGGGCCTCAAA  78 54
        phnC NONE
        phnD NONE
        phnE NONE
        phnF NONE
        phnG NONE
        phnH  320651 ..  320665 -  -2.7  -2.84812   ACGTACATCAGCACA               CCTCC ACGTG GGTGG               TTCGCGGGATCGCCA  42 3
JJN11_RS01495 NONE
        phnJ NONE
        phnK  317939 ..  317956 -  -3.3  -2.70946   CCGGCCTACAAAGAG             CGCGGTCC GTA GG-CCGGG             TCAGGCGAAGCCGCC  42 58
        phnL NONE
        phnM NONE
        phnN NONE
        phnO NONE
        phnP  313840 ..  313862 -  -6.3  -3.62096   GTTTATTACCGTAAA          GCCAG-CTCA CCTG CGAGACTGGC           TTTATGAAACATTAC  63 440
JJN11_RS01440 NONE
JJN11_RS01435 NONE
JJN11_RS01430 NONE
JJN11_RS01425 NONE
JJN11_RS01420 NONE
JJN11_RS01415  304151 ..  304191 - -10.4  -3.53012   GTGGCGCGCGTTAAA GCTGTGCTCCGCCG-CACCG GCG CGCTGGCGGCAGAGC-CTGC GGCGGTCCCGCGGGC  71 368
        fdhF  301096 ..  301136 -   -15  -4.31859   CTAACAAAAGAAGAA GGGGCTAT-CCTCAACT TGTTGGGT AGTTGAGGGATAGCCCC  GGTTAATGGAAACAT 100 278
JJN11_RS01400  300885 ..  300907 - -12.7  -3.37796   CTCCACTACCTACAA          GCCGGGCGGG TCTC CCCGCCC-GC           TGAAGTTAGCCTGCT  87 31
JJN11_RS01395  300053 ..  300078 -  -9.7  -4.37711   CCAGTAAAGTGAAAA         GCCGGGTGACGC TTC GCTT-ACCCGGC         CTACATGACCGTAGG  85 68
         acs NONE
JJN11_RS01380 NONE
        actP  293904 ..  293923 -  -7.8  -2.72991   CGACATCCTGAAGCA            GCATCAGC AGCG GCTGCTGC             ACTTCAGCGACACCC  54 361
JJN11_RS01365  291086 ..  291119 -  -6.5  -2.80817   AACTGCACAATACTA     CCGGCG-GTTCCGGCG CGG CAGCGGGCCGCGCCGG     CGTGAGACGCTTAGC  54 36
JJN11_RS01345  287190 ..  287202 -  -6.2  -3.58864   CCAGCAGCATAAAGA                GGCG CGTAT CGCC                CGGGCGGCCACCGCG  58 437
        soxS  281814 ..  281836 -    -7  -3.93963   ATGATCACCGATAAA          GCCCGACAC TATAAT GTG-CGGGC           CCAGCAGATCAAAAT  66 449
JJN11_RS01305  278072 ..  278087 -    -9  -5.61596   ATGGTCATAAAAAAA              CCAGAC CCTG GTCTGG               TTTTTATCGCTGGAA 100 41
JJN11_RS01295 NONE
JJN11_RS01290 NONE
JJN11_RS01285  274645 ..  274661 - -13.7  -5.44119   GTTACTGCAAAAAAA              GCTGCCC GGC GGGCAGC              TTTTTTCGTTTTACC 100 36
JJN11_RS01270  272434 ..  272448 - -11.4  -5.39681   AGAACGAAATAAAAA               CCCTGC CTG GCAGGG               TTTTTTTATACCTGT 100 59
        uvrA  268609 ..  268623 -  -4.2  -4.56597   CGGCCTCGTTAAAAA               CCAGCC CTG AACTGG               CAGAACTGTTGCGCC  70 211
JJN11_RS01225  261887 ..  261906 - -13.6  -4.42206   AAGCAAAGCAAGAAA            GGGCTTCC CAAG GGAAGCCC             AATTTTTTATCAAGG 100 35
         zur  257456 ..  257474 -    -3  -4.38472   GGTAAAGTAAAAGAA             CAGTGGGG CGA CCTGACTG             ACGATGACATGACCG  64 228
        plsB  252129 ..  252141 -  -6.2  -5.24531   ACTGGGCATAAAAAA                GCCG GGTGG CGGC                TTCGCCTTATCCGGC  89 96
        malE NONE
        malF NONE
        malG  242781 ..  242800 - -10.6  -5.80364   ACGGGAATAAAAAAA            GGGCGGCC CGAG GGCCGCCG             AAAACAGTCACAAGT 100 95
        lysC  238859 ..  238878 - -16.4  -5.67063   GGCAGGATAAAAAAA            GGGCCCGG TTGT CCGGGCCC             TTTTTTGTTATTCAA 100 33
        rtcR  234963 ..  234980 -  -9.8  -5.14563   GTCGTTATTAAAAAA             GCCGGG ATCGAG CCCGGC              TTAGAGGTATTGTTT 100 76
        panS  233914 ..  233943 - -11.5  -2.87132   CTTGGTGTGGACATA       CCTGAAGCCTCCT GTGA AAGAGGCTTCAGT        GTAAAGCATGCCTTC  76 57
JJN11_RS01095  233631 ..  233648 -  -6.9  -4.85782   GGCCGTAAAAAGAAA             GGGCGCT AATC AGCGCCT              TCCACGGGTTGGGGT  83 17
        iclR  225036 ..  225049 -  -8.1  -2.74523   CTACCCGGAAGATGA               GCTCG CCAG CGAGC                CGTGGTACAGCGTCT  54 325
        purH NONE
        purD  210641 ..  210664 - -14.6  -4.09511   AAGAGTTTCTGAAAA          TCCCCCTCCC TTGC GGGAGAGGGA           CTGGTGAAGGGGGGA 100 42
         rsd  205505 ..  205524 -  -7.8  -3.19824   GGATGAAGCAAGAGA            GGATCGCC CGGC GGCGATAC             ATGAACAGATTGACT  62 191
        thiC NONE
        thiE NONE
JJN11_RS00970 NONE
        thiS NONE
        thiG NONE
        thiH  200007 ..  200034 -  -2.6   -4.7153   AAACAAGCGTAAAAA        TCCGGGCGCGTTA CAG CAACG-GCCCGTT        GATGAGGTTACGTGA  68 76
JJN11_RS00950 NONE
JJN11_RS00945  199075 ..  199088 -  -9.5  -5.15634   CAGCCCATTAAAAAA               CCCGC TTCG GCGGG                TTTTTTTTTGTCTGA 100 105
        coaA  183661 ..  183676 - -11.8  -5.86332   GTAAGTGAAAAAAAA              CCGGCG AATT CGCCGG               TTTTTTTTATTGGTT 100 50
         tag NONE
JJN11_RS00815  171641 ..  171663 - -14.2  -2.66695   GTGCTGACCAAAGAT           CTCCCCAGCT CGA AGCTGGGGAA           TGGCTGCGCGGGAAA  78 82
JJN11_RS00805  168533 ..  168591 - -12.9  -3.06515   CCTTAGCGCGAAAAT GCCCGGTGGCG-CTACGCTTACCGGGAC GACT GGCCGGGCAGGCGATGCCGCCACCCGGC ACAACACTTACTGAA  83 33
JJN11_RS00800  167476 ..  167494 -  -6.6  -3.37879   ACGAAGGGGAATTAA             CGCGCCGT GGA ACCGCGCA             CGATCAGCTCCCCGG  59 3
JJN11_RS00795 NONE
JJN11_RS00790 NONE
JJN11_RS00785 NONE
        ghrB  163273 ..  163287 - -12.8   -4.8143   GCAAGAATTTAAAAA               CCCGCC TCT GGCGGG               TTTTTTTTCGTTTAA 100 37
JJN11_RS00765  161320 ..  161337 - -14.1  -4.43283   TGATAGAAACAGAAA             CCCCCGC AAAT GCGGGGG              CTAAAATATAACTAT 100 37
JJN11_RS00740  154741 ..  154754 -  -9.5  -2.87683   AGATCGCCTGATACA               GCGCC CGGT GGCGC                TTCGTTTGCACAGCC  68 88
        xylF  149835 ..  149865 -  -2.6  -2.75807   GGAAAACAGTACAAG      TCGATGTGCCCCCG CAAGC CGGGGGCG-AT-GA      TGGATTACAGTTCGC  42 30
JJN11_RS00715 NONE
JJN11_RS00710 NONE
JJN11_RS00705  145849 ..  145868 - -13.6  -5.42259   GTAGTCTTAAAAAAA            GGCCTTCC ATCC GGAAGGCC             TTTTTTATTTATATC 100 34
JJN11_RS00695  142562 ..  142580 -    -3  -2.74144   TGCGTAGGTGCAAAT             CAGCGTCG AAA CGAAGATG             TGTGACTTTATGTTG  41 111
        avtA  140877 ..  140907 - -10.5  -3.38046   CTGTGACGGCAAAGA      CCTTT-ACCTCCCG CATC CGGGTGGTGAAAGG       CGGGACGTTCACTAC  69 355
JJN11_RS00675 NONE
JJN11_RS00670  136174 ..  136197 - -12.5  -4.77157   TTAATGTAGTAAAAA          TCAGCCCTC TGAGAT GAGGGCTGA           TTCTGTTTTCCGGCT 100 41
JJN11_RS00660  134286 ..  134308 - -11.3  -2.74192   GATGCTGGAACATTA           CCAGCAGAC CAAGT GCCTGCTGG           TGAGCTACTCCGACA  66 30
JJN11_RS00650  131641 ..  131652 -  -5.8  -3.53343   AACGTCGGGCGTAAA                CTGG CGAT CCAG                 ATCCTGGAGTATTTC  55 124
JJN11_RS00620 NONE
        mtlD NONE
        mtlR  121816 ..  121828 -  -3.4  -2.73124   GCTTACTTCTGAAAC                GCTT TTTTT AAGC                TGATTCGGGAAATCA  42 0
JJN11_RS00605  121312 ..  121324 -  -3.4  -3.05384   GGGTTGTTCAGTGAA                TTGG TAGGG CCAA                TGTGGAGAGGGAAGA  45 82
        lldP NONE
        lldR NONE
        lldD  117447 ..  117473 - -12.2  -2.80074   GCGGGCAGAATATCA         TCCCCTCTCCCC TTT GGGGAGAGGGTC         AGGGTGAGGGATCAG  80 52
        trmL  116644 ..  116659 -    -4  -3.09004   GGACCGGGAAAACCA              GCGGTGA CCG TCACC-C              GAAAATCCGTGAAGG  45 306
        gpmM NONE
        envC NONE
JJN11_RS00545  109677 ..  109708 - -10.8  -4.78107   CACCAGGAGCAAAAA      GCGTCCGCGGAC AAAAAAAA GCCCGCGGACTC       TCGTGTCATTGAGTA 100 63
        rfaD NONE
        rfaF NONE
        rfaC NONE
        rfaQ NONE
JJN11_RS00505  100679 ..  100702 -  -5.3  -4.15044   CTGCGGCCTAATAAA          GGC-CATAGC GTACT GCTACGCGCC          CTGGCCGCCATTGAT  66 487
JJN11_RS00495   98411 ..   98448 - -10.8  -2.75844   GCCGGCAGGCTAAAG  CGTTCCACGCCAG-GGTGT TAA ACACCGCTGGCGTG--ACG  TCTTCATCAGGATGT  74 32
JJN11_RS00490 NONE
JJN11_RS00485 NONE
JJN11_RS00480   94682 ..   94698 -  -9.4  -5.76633   TCACAGATAAAAAAA              CGGGCA TTCGC TGCCCG              TTTTTTTGTTTCTGC 100 41
        waaA   93275 ..   93298 -    -3  -2.92642   ATCACCACCGACAGA          CGCGCAGACA TCAG TGGCTCCGCA           GGGGCAGGTAAGGTT  43 12
JJN11_RS00470 NONE
        coaD   91949 ..   91961 -  -9.1  -2.84098   TGTGGCAACGAAGCA                TGCCC AGC GGGCA                ACGTTCTATTGCCGT  58 96
       coaBC NONE
         dut   87915 ..   87934 - -12.2     -2.89   ACGTCCACACAACGA            CCGCAAAC GGCT GTTTGCGG             TTTGTTATTACGTTA  80 68
        slmA   87199 ..   87228 -  -9.9  -3.23274   CGGCGTATAAGTCAA       TGGCCCGGT-GGCG CGA CGCTTACCGGGCCT       ACGAAAACCGTAGGC  70 61
JJN11_RS00415   84733 ..   84751 - -10.3  -3.43676   GTCATTAATTGACAA             TGGTCCC TTAGC GGGACCA             TTAATAGCGAAAAAC  75 53
JJN11_RS00410   82582 ..   82602 -  -6.9  -3.08679   TTGTGCGATCGAATA            TGCATTAGA TTA TCTAATGCC            ACTTTGGCTTAAAGA  55 91
JJN11_RS00405   81395 ..   81407 -  -3.3  -3.85698   CCGTGCCGCCAGAAA                GGCGT TTT ACCCC                GCTCACCTGTTTTTA  55 503
         gmk   79332 ..   79347 -  -3.3  -2.78816   TGACTGGGCATGATA              CTGAA TGTGGG TTCAG               TCTGCCAACAGTTTG  43 22
        rpoZ   78996 ..   79006 -  -2.4  -2.83082   TCAAACAGATACAAG                 GGCG ACC CGCA                 GGTTTAATTAACGAC  40 33
        spoT NONE
        trmH NONE
JJN11_RS23465 NONE
        recG NONE
        sopA NONE
JJN11_RS23835   72730 ..   72741 -  -4.4  -4.46926   GAGTGGATGAGAAAA                GCAA ACGA TTGC                 TAACAAAAAACGTTG  65 78
JJN11_RS23825 NONE
JJN11_RS00365   71245 ..   71279 - -10.1  -2.72379   GGAATGGTGTAATTA    CGTGTCACGGCAGCAG TTGC CTGCTGCCGTAA-AGG     GAGATCAGTTCTTTT  69 30
JJN11_RS00360   69021 ..   69046 -  -8.2  -4.07885   GAGTTGTCTGGAAAA         GCCCGGC-GGC GCGTT GCTTGCCGGGC         CTACGGATCGCGCAG  76 443
JJN11_RS23800 NONE
JJN11_RS23795   65207 ..   65217 -  -3.2  -3.33843   AAGTAACCAGAAAAC                 GCAA TAC CTGC                 CCGTGGGTGAATGGT  48 441
JJN11_RS00345   64828 ..   64839 -    -3  -6.02919   TTAGAAAGAAAAAAA                TAGA GCTT TCTA                 TAAAGATTATGTGTG 100 91
JJN11_RS00340 NONE
JJN11_RS00335   62807 ..   62843 -  -2.6  -5.24129   TTTTTCGACAAAAAA    TAATATCATCAT AGACATTTAAAAA ATGATGATATTA    ATTGCTGTATTTAAT  80 36
JJN11_RS00325   62199 ..   62213 -  -2.8  -2.88634   AGGTTAAGTAACAAT               CAGG TGATCAG CCTG               TGATTACACCATGGA  42 29
JJN11_RS00320   61300 ..   61345 -  -3.1  -3.91798   TAAGGGTTAATTAAA GCGCGTACTACCCCTTCGCCCC TAT GGGGGGA-GGGGAAATAACCCC TTAACCCTTTCCTGA  54 47
JJN11_RS23780 NONE
JJN11_RS00310 NONE
JJN11_RS00305   59633 ..   59657 -  -2.7  -4.07568   CGCCCGCCTGGAAAA          CCGCTTCGAAC GTG GTCTGGAGCAG          GTTACCGCCACCTAC  56 468
JJN11_RS00295   58619 ..   58632 -  -3.1  -3.29043   AACTTTTCGTGACAA               TTCCC GCAG GAGAA                AATCATCGGAGGATA  47 28
        uraH NONE
JJN11_RS00285   56988 ..   57008 -  -6.9  -5.82388   AAACTGCAAAAAAAA            GACGACA GTGAGGG TGTCGTC            TAAACGGGGTACTGC 100 83
JJN11_RS00280 NONE
        silC NONE
        cusF NONE
        silB NONE
        silA NONE
JJN11_RS00245 NONE
JJN11_RS23735   49623 ..   49636 -  -3.1  -2.78463   ATGCCCGCGATGACA               GCGGCA ACA TGC-GC               GGCGGACTCATCGGC  42 29
JJN11_RS00235 NONE
JJN11_RS00225 NONE
        silP NONE
JJN11_RS23725 NONE
JJN11_RS00220 NONE
JJN11_RS00215 NONE
JJN11_RS00210 NONE
        pcoA NONE
JJN11_RS00205 NONE
        pcoB NONE
        pcoC NONE
JJN11_RS00200 NONE
        pcoD   40998 ..   41028 -  -6.8  -3.53012   CTGTGGGTCTGGAAA      GCGCTGCCGTCGC TGCCGG GCGA-AGCCGCGC       ACCACAAGCAGAACA  61 17
        pcoR NONE
        pcoS NONE
JJN11_RS00180 NONE
        pcoE   38171 ..   38183 -  -4.1  -3.60006   AAGGAGACGGCGAAA                CGTAT CCC ACACG                CCACGCTGGTGGAGT  52 80
        vapB NONE
JJN11_RS23660   36177 ..   36195 -  -8.8  -2.68775   CCATCACCAAATGGA             CCCCGC GCCGCAA GCGGGG             CTCGTACCTCGGCAT  61 316
JJN11_RS23655   35378 ..   35399 -  -7.1  -3.29144   GGAGTGCTCCCACAA           GGACGCGGC AGGG GCGGCGACC            GGTTTTGTCGGGCTG  62 44
JJN11_RS23650   34304 ..   34319 -  -3.2  -3.45054   CCCGATAAGCGATAA              GGCG GAAATCGA CGCC               CGCTATCGTTACTGG  50 376
JJN11_RS00135   27692 ..   27713 -  -8.6  -2.56596   TCTTCGAGTAACTTA           CTCCCCGG CGGCGT CCGGGGTG            ATGATTTTCACAAAG  60 1
        arsH   25627 ..   25650 - -17.4  -3.63336   ACACACGATTCCAAA          CCCCGCCGGC GCAA ACCGGCGGGG           TTTTTCGTTTAAAGC 100 502
        tisB   24844 ..   24865 - -17.3   -3.5393   ATTATCGTTGTTAAA           GAGGGGCGG TTTC CCGCCCCTC            TTCGGTGCGACTTGA 100 48
JJN11_RS00110   24333 ..   24353 -  -7.6  -3.01001   GATTTTTAAACGACA           GC-GGCAAC GAAT GTTGCCAGC            GTTAATTCATTTGCT  60 40
        emrD NONE
        dsdA NONE
JJN11_RS23580   20071 ..   20081 -  -8.2   -4.4078   GCTGCGCAATGAAAA                 GGCG ATG CGCC                 TGAAAGAAGACCTGC  80 524
JJN11_RS23570 NONE
JJN11_RS23565 NONE
JJN11_RS23560 NONE
JJN11_RS00070 NONE
JJN11_RS23555 NONE
JJN11_RS00065 NONE
JJN11_RS00060 NONE
JJN11_RS23550 NONE
JJN11_RS00055   11882 ..   11907 -    -4  -3.61398   GGCCTTTGCCAACAA        CCTGCACGCCACC AGC GG-GGCG-GC-GG        CGCTCTCCTACGCCA  52 114
JJN11_RS23540   11255 ..   11267 -  -2.6  -3.40709   ATTAGGCAAGAAAAT                CCGC GAACT GCAG                GTAAAAGAGCGCTAC  47 137
JJN11_RS00035    8040 ..    8085 - -11.1  -3.55548   GAACAGGGCTGGAAA CAGGCGGGCGATCTACCGCTTC AGG GCA-CGGCAGATCGCATGCCCG CCCCGCCTGCCGGGG  74 469
JJN11_RS23525    7448 ..    7458 -  -2.4   -3.1149   AGTGAATGTTAAAAC                 CGGC GAC GTCG                 AGGTGATCTATCGCG  43 253
        arsH NONE
JJN11_RS23475    1463 ..    1474 -  -2.2  -4.57755   AGCCACGACATAAAA                GAAG ACTT CTCC                 AATTTAATCAGAACA  63 520
JJN11_RS23850     658 ..     686 -  -6.1  -3.05816   GCATGCGGTAGGCAA       TGGCATTATGGC GCGTAA GCC-CAATGCCA        AAGTGGTGTATATGC   0 154
