A9E81_RS00005	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
A9E81_RS00010	SM00480	DNA polymerase III beta subunit
A9E81_RS00020	SM00387	Histidine kinase-like ATPases
A9E81_RS00020	SM00433	TopoisomeraseII
A9E81_RS00110	SM00981	A9E81_RS00110
A9E81_RS00145	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS00145	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9E81_RS00145	SM00091	PAS domain
A9E81_RS00145	SM00267	diguanylate cyclase
A9E81_RS00180	SM00062	Bacterial periplasmic substrate-binding proteins
A9E81_RS00185	SM00248	ankyrin repeats
A9E81_RS00290	SM00422	helix_turn_helix, mercury resistance
A9E81_RS00335	SM01236	A9E81_RS00335
A9E81_RS00370	SM00487	DEAD-like helicases superfamily
A9E81_RS00370	SM00490	helicase superfamily c-terminal domain
A9E81_RS00380	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS00380	SM00267	diguanylate cyclase
A9E81_RS00400	SM01011	Aminopeptidase P, N-terminal domain
A9E81_RS00455	SM00062	Bacterial periplasmic substrate-binding proteins
A9E81_RS00475	SM00316	Ribosomal protein S1-like RNA-binding domain
A9E81_RS00475	SM00357	Cold shock protein domain
A9E81_RS00475	SM00955	A9E81_RS00475
A9E81_RS00480	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A9E81_RS00510	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A9E81_RS00510	SM00474	3'-5' exonuclease
A9E81_RS00510	SM00475	5'-3' exonuclease
A9E81_RS00510	SM00482	DNA polymerase A domain
A9E81_RS00525	SM00825	Beta-ketoacyl synthase
A9E81_RS00575	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS00620	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS00675	SM00945	ProQ/FINO family
A9E81_RS00700	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A9E81_RS00705	SM00861	Transketolase, pyrimidine binding domain
A9E81_RS00800	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9E81_RS00800	SM00267	diguanylate cyclase
A9E81_RS00805	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS00875	SM00256	A Receptor for Ubiquitination Targets
A9E81_RS00945	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS01025	SM01120	A9E81_RS01025
A9E81_RS01025	SM01121	A9E81_RS01025
A9E81_RS01045	SM00220	Serine/Threonine protein kinases, catalytic domain
A9E81_RS01095	SM01001	AIR carboxylase
A9E81_RS01155	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9E81_RS01155	SM00267	diguanylate cyclase
A9E81_RS01255	SM00487	DEAD-like helicases superfamily
A9E81_RS01255	SM00490	helicase superfamily c-terminal domain
A9E81_RS01260	SM00360	RNA recognition motif
A9E81_RS01320	SM00986	Uracil DNA glycosylase superfamily
A9E81_RS01320	SM00987	UreE urease accessory protein, C-terminal domain 
A9E81_RS01330	SM00644	A9E81_RS01330
A9E81_RS01350	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9E81_RS01395	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS01395	SM00091	PAS domain
A9E81_RS01395	SM00267	diguanylate cyclase
A9E81_RS01400	SM00387	Histidine kinase-like ATPases
A9E81_RS01405	SM00897	FIST N domain
A9E81_RS01405	SM01204	A9E81_RS01405
A9E81_RS01450	SM00841	Elongation factor P, C-terminal
A9E81_RS01450	SM01185	A9E81_RS01450
A9E81_RS01520	SM00696	Repeats found in Drosophila proteins.
A9E81_RS01580	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A9E81_RS01580	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A9E81_RS01585	SM00649	Ribosomal protein L11/L12
A9E81_RS01610	SM00663	RNA polymerase I subunit A N-terminus
A9E81_RS01625	SM00838	Elongation factor G C-terminus
A9E81_RS01625	SM00889	Elongation factor G, domain IV
A9E81_RS01635	SM01403	A9E81_RS01635
A9E81_RS01655	SM01382	A9E81_RS01655
A9E81_RS01655	SM01383	A9E81_RS01655
A9E81_RS01670	SM00322	K homology RNA-binding domain
A9E81_RS01690	SM01374	A9E81_RS01690
A9E81_RS01695	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A9E81_RS01755	SM00363	S4 RNA-binding domain
A9E81_RS01755	SM01390	A9E81_RS01755
A9E81_RS01760	SM00662	RNA polymerases D
A9E81_RS01795	SM00825	Beta-ketoacyl synthase
A9E81_RS01800	SM00825	Beta-ketoacyl synthase
A9E81_RS01855	SM00267	diguanylate cyclase
A9E81_RS01900	SM00749	bacterial OsmY and nodulation domain
A9E81_RS01930	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS01940	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A9E81_RS01985	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS01985	SM00962	SRP54-type protein, GTPase domain
A9E81_RS01985	SM00963	SRP54-type protein, helical bundle domain
A9E81_RS01995	SM00248	ankyrin repeats
A9E81_RS02000	SM00248	ankyrin repeats
A9E81_RS02105	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS02120	SM00357	Cold shock protein domain
A9E81_RS02170	SM00248	ankyrin repeats
A9E81_RS02260	SM00507	HNH nucleases
A9E81_RS02285	SM00798	AICARFT/IMPCHase bienzyme
A9E81_RS02285	SM00851	MGS-like domain
A9E81_RS02295	SM00878	Biotin carboxylase C-terminal domain
A9E81_RS02395	SM00244	prohibitin homologues
A9E81_RS02400	SM00244	prohibitin homologues
A9E81_RS02405	SM00788	Adenylosuccinate synthetase
A9E81_RS02420	SM00465	GIY-YIG type nucleases (URI domain)
A9E81_RS02430	SM00062	Bacterial periplasmic substrate-binding proteins
A9E81_RS02430	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A9E81_RS02440	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS02470	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9E81_RS02470	SM00245	tail specific protease
A9E81_RS02505	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9E81_RS02515	SM00935	Outer membrane protein (OmpH-like)
A9E81_RS02640	SM00861	Transketolase, pyrimidine binding domain
A9E81_RS02655	SM00881	CoA binding domain
A9E81_RS02690	SM01400	A9E81_RS02690
A9E81_RS02715	SM00100	Cyclic nucleotide-monophosphate binding domain
A9E81_RS02720	SM00563	Phosphate acyltransferases
A9E81_RS02750	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A9E81_RS02750	SM01232	A9E81_RS02750
A9E81_RS02770	SM00822	A9E81_RS02770
A9E81_RS02775	SM00822	A9E81_RS02775
A9E81_RS02810	SM00363	S4 RNA-binding domain
A9E81_RS02880	SM00732	Likely ribonuclease with RNase H fold.
A9E81_RS02895	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS02905	SM00938	Nitrogen regulatory protein P-II
A9E81_RS02930	SM00563	Phosphate acyltransferases
A9E81_RS02960	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS02995	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A9E81_RS03005	SM01091	Transporter associated domain
A9E81_RS03010	SM00829	Enoylreductase
A9E81_RS03155	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS03155	SM01086	C-terminal, D2-small domain, of ClpB protein
A9E81_RS03170	SM00327	von Willebrand factor (vWF) type A domain
A9E81_RS03205	SM00919	Malic enzyme, NAD binding domain
A9E81_RS03205	SM01274	A9E81_RS03205
A9E81_RS03245	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS03315	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A9E81_RS03335	SM00062	Bacterial periplasmic substrate-binding proteins
A9E81_RS03355	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS03370	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9E81_RS03380	SM00883	Chaperonin 10 Kd subunit
A9E81_RS03400	SM00387	Histidine kinase-like ATPases
A9E81_RS03400	SM00433	TopoisomeraseII
A9E81_RS03405	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS03420	SM00248	ankyrin repeats
A9E81_RS03430	SM00947	Carbonic anhydrase
A9E81_RS03455	SM00829	Enoylreductase
A9E81_RS03460	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS03495	SM00822	A9E81_RS03495
A9E81_RS03515	SM00387	Histidine kinase-like ATPases
A9E81_RS03515	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS03520	SM00448	cheY-homologous receiver domain
A9E81_RS03520	SM00862	Transcriptional regulatory protein, C terminal
A9E81_RS03565	SM00749	bacterial OsmY and nodulation domain
A9E81_RS03620	SM00487	DEAD-like helicases superfamily
A9E81_RS03620	SM00490	helicase superfamily c-terminal domain
A9E81_RS03630	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS03635	SM01005	Alanine racemase, C-terminal domain
A9E81_RS03645	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9E81_RS03655	SM00704	CDGSH-type zinc finger. Function unknown.
A9E81_RS03660	SM00267	diguanylate cyclase
A9E81_RS03665	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9E81_RS03670	SM00465	GIY-YIG type nucleases (URI domain)
A9E81_RS03705	SM00858	A9E81_RS03705
A9E81_RS03780	SM00858	A9E81_RS03780
A9E81_RS03805	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS03835	SM00849	Metallo-beta-lactamase superfamily
A9E81_RS03865	SM00977	TilS substrate C-terminal domain
A9E81_RS03870	SM01321	A9E81_RS03870
A9E81_RS04015	SM01329	A9E81_RS04015
A9E81_RS04025	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS04025	SM01086	C-terminal, D2-small domain, of ClpB protein
A9E81_RS04080	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS04080	SM00267	diguanylate cyclase
A9E81_RS04080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9E81_RS04115	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS04135	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9E81_RS04140	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS04180	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS04200	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS04215	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS04255	SM00028	Tetratricopeptide repeats
A9E81_RS04275	SM00341	Helicase and RNase D C-terminal
A9E81_RS04275	SM00487	DEAD-like helicases superfamily
A9E81_RS04275	SM00490	helicase superfamily c-terminal domain
A9E81_RS04275	SM00956	A9E81_RS04275
A9E81_RS04320	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A9E81_RS04320	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A9E81_RS04325	SM00198	SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.
A9E81_RS04335	SM00267	diguanylate cyclase
A9E81_RS04380	SM00563	Phosphate acyltransferases
A9E81_RS04390	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS04390	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9E81_RS04390	SM00091	PAS domain
A9E81_RS04390	SM00267	diguanylate cyclase
A9E81_RS04415	SM00671	Sel1-like repeats.
A9E81_RS04430	SM00478	endonuclease III
A9E81_RS04460	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9E81_RS04470	SM00822	A9E81_RS04470
A9E81_RS04485	SM00858	A9E81_RS04485
A9E81_RS04540	SM00014	Acid phosphatase homologues
A9E81_RS04550	SM00893	Electron transfer flavoprotein domain
A9E81_RS04555	SM00893	Electron transfer flavoprotein domain
A9E81_RS04560	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A9E81_RS04560	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A9E81_RS04575	SM00842	Cell division protein FtsA
A9E81_RS04595	SM00965	Secretin and TonB N terminus short domain
A9E81_RS04620	SM00904	Riboflavin kinase
A9E81_RS04665	SM00368	Leucine rich repeat, ribonuclease inhibitor type
A9E81_RS04710	SM00487	DEAD-like helicases superfamily
A9E81_RS04710	SM00490	helicase superfamily c-terminal domain
A9E81_RS04710	SM00982	A9E81_RS04710
A9E81_RS04710	SM01058	CarD-like/TRCF domain
A9E81_RS04730	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9E81_RS04730	SM00292	breast cancer carboxy-terminal domain
A9E81_RS04730	SM00532	Ligase N family
A9E81_RS04750	SM00481	DNA polymerase alpha chain like domain
A9E81_RS04975	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS05055	SM00849	Metallo-beta-lactamase superfamily
A9E81_RS05055	SM01027	Beta-Casp domain
A9E81_RS05060	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
A9E81_RS05065	SM01400	A9E81_RS05065
A9E81_RS05075	SM00267	diguanylate cyclase
A9E81_RS05220	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS05225	SM00989	A9E81_RS05225
A9E81_RS05230	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS05230	SM00267	diguanylate cyclase
A9E81_RS05240	SM00822	A9E81_RS05240
A9E81_RS05245	SM00357	Cold shock protein domain
A9E81_RS05255	SM00671	Sel1-like repeats.
A9E81_RS05330	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9E81_RS05400	SM00831	Cation transporter/ATPase, N-terminus
A9E81_RS05510	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS05510	SM00091	PAS domain
A9E81_RS05510	SM00267	diguanylate cyclase
A9E81_RS05515	SM01248	A9E81_RS05515
A9E81_RS05520	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS05525	SM00636	A9E81_RS05525
A9E81_RS05560	SM00257	Lysin motif
A9E81_RS05565	SM00062	Bacterial periplasmic substrate-binding proteins
A9E81_RS05575	SM00062	Bacterial periplasmic substrate-binding proteins
A9E81_RS05575	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A9E81_RS05600	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A9E81_RS05600	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9E81_RS05660	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS05705	SM00342	helix_turn_helix, arabinose operon control protein
A9E81_RS05800	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS05800	SM00267	diguanylate cyclase
A9E81_RS05820	SM00671	Sel1-like repeats.
A9E81_RS05825	SM00387	Histidine kinase-like ATPases
A9E81_RS05825	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS05830	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS05830	SM00448	cheY-homologous receiver domain
A9E81_RS05995	SM00357	Cold shock protein domain
A9E81_RS06010	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9E81_RS06030	SM00347	helix_turn_helix multiple antibiotic resistance protein
A9E81_RS06090	SM00047	Lysozyme subfamily 2
A9E81_RS06140	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS06155	SM00919	Malic enzyme, NAD binding domain
A9E81_RS06155	SM01274	A9E81_RS06155
A9E81_RS06170	SM00257	Lysin motif
A9E81_RS06195	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9E81_RS06210	SM00387	Histidine kinase-like ATPases
A9E81_RS06210	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS06215	SM00448	cheY-homologous receiver domain
A9E81_RS06215	SM00862	Transcriptional regulatory protein, C terminal
A9E81_RS06225	SM00257	Lysin motif
A9E81_RS06235	SM00849	Metallo-beta-lactamase superfamily
A9E81_RS06300	SM00840	A9E81_RS06300
A9E81_RS06325	SM00465	GIY-YIG type nucleases (URI domain)
A9E81_RS06350	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS06365	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A9E81_RS06410	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A9E81_RS06420	SM00363	S4 RNA-binding domain
A9E81_RS06425	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9E81_RS06535	SM00671	Sel1-like repeats.
A9E81_RS06540	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS06540	SM00267	diguanylate cyclase
A9E81_RS06575	SM01230	A9E81_RS06575
A9E81_RS06600	SM00387	Histidine kinase-like ATPases
A9E81_RS06675	SM00479	A9E81_RS06675
A9E81_RS06725	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A9E81_RS06740	SM00825	Beta-ketoacyl synthase
A9E81_RS06840	SM00434	DNA Topoisomerase IV
A9E81_RS06860	SM00316	Ribosomal protein S1-like RNA-binding domain
A9E81_RS06870	SM00028	Tetratricopeptide repeats
A9E81_RS06880	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A9E81_RS06920	SM01133	A9E81_RS06920
A9E81_RS06940	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A9E81_RS06940	SM00387	Histidine kinase-like ATPases
A9E81_RS06940	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS06945	SM00448	cheY-homologous receiver domain
A9E81_RS06945	SM00862	Transcriptional regulatory protein, C terminal
A9E81_RS06950	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9E81_RS06950	SM01091	Transporter associated domain
A9E81_RS06965	SM00481	DNA polymerase alpha chain like domain
A9E81_RS06990	SM00363	S4 RNA-binding domain
A9E81_RS06995	SM00421	helix_turn_helix, Lux Regulon
A9E81_RS07040	SM00954	Region found in RelA / SpoT proteins
A9E81_RS07070	SM00957	SecA DEAD-like domain
A9E81_RS07070	SM00958	SecA preprotein cross-linking domain
A9E81_RS07100	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS07115	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9E81_RS07115	SM00876	Biotin and Thiamin Synthesis associated domain
A9E81_RS07135	SM00834	Putative regulatory protein
A9E81_RS07155	SM00927	DNA mismatch repair enzyme MutH
A9E81_RS07170	SM00220	Serine/Threonine protein kinases, catalytic domain
A9E81_RS07185	SM00344	helix_turn_helix ASNC type
A9E81_RS07205	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A9E81_RS07205	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9E81_RS07295	SM00936	Penicillin-binding protein 5, C-terminal domain 
A9E81_RS07330	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS07340	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS07340	SM00267	diguanylate cyclase
A9E81_RS07375	SM00100	Cyclic nucleotide-monophosphate binding domain
A9E81_RS07460	SM00564	beta-propeller repeat
A9E81_RS07480	SM00028	Tetratricopeptide repeats
A9E81_RS07490	SM00562	A9E81_RS07490
A9E81_RS07525	SM00062	Bacterial periplasmic substrate-binding proteins
A9E81_RS07545	SM00861	Transketolase, pyrimidine binding domain
A9E81_RS07600	SM00450	Rhodanese Homology Domain
A9E81_RS07635	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS07775	SM00953	A9E81_RS07775
A9E81_RS07805	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A9E81_RS07810	SM00422	helix_turn_helix, mercury resistance
A9E81_RS07815	SM00422	helix_turn_helix, mercury resistance
A9E81_RS07830	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS07835	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS07900	SM00849	Metallo-beta-lactamase superfamily
A9E81_RS07980	SM00867	YceI-like domain 
A9E81_RS07990	SM00867	YceI-like domain 
A9E81_RS08025	SM00028	Tetratricopeptide repeats
A9E81_RS08080	SM01359	A9E81_RS08080
A9E81_RS08080	SM01360	A9E81_RS08080
A9E81_RS08105	SM00642	Alpha-amylase domain
A9E81_RS08115	SM00642	Alpha-amylase domain
A9E81_RS08125	SM01209	A9E81_RS08125
A9E81_RS08125	SM01210	A9E81_RS08125
A9E81_RS08140	SM01211	A9E81_RS08140
A9E81_RS08240	SM00945	ProQ/FINO family
A9E81_RS08340	SM00248	ankyrin repeats
A9E81_RS08340	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
A9E81_RS08350	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9E81_RS08365	SM00116	Domain in cystathionine beta-synthase and other proteins.
A9E81_RS08365	SM01240	A9E81_RS08365
A9E81_RS08395	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08410	SM00829	Enoylreductase
A9E81_RS08435	SM00845	GatB domain
A9E81_RS08440	SM00869	Autotransporter beta-domain
A9E81_RS08445	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A9E81_RS08445	SM01080	A9E81_RS08445
A9E81_RS08500	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08500	SM01086	C-terminal, D2-small domain, of ClpB protein
A9E81_RS08535	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08560	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08560	SM00448	cheY-homologous receiver domain
A9E81_RS08565	SM00387	Histidine kinase-like ATPases
A9E81_RS08565	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS08570	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08580	SM00843	A9E81_RS08580
A9E81_RS08595	SM00450	Rhodanese Homology Domain
A9E81_RS08600	SM00316	Ribosomal protein S1-like RNA-binding domain
A9E81_RS08615	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A9E81_RS08640	SM00937	A9E81_RS08640
A9E81_RS08670	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08670	SM00962	SRP54-type protein, GTPase domain
A9E81_RS08755	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A9E81_RS08765	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08785	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A9E81_RS08785	SM00534	ATPase domain of DNA mismatch repair MUTS family
A9E81_RS08800	SM01004	Delta-aminolevulinic acid dehydratase
A9E81_RS08855	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08905	SM00878	Biotin carboxylase C-terminal domain
A9E81_RS08925	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS08925	SM00930	A9E81_RS08925
A9E81_RS09010	SM00450	Rhodanese Homology Domain
A9E81_RS09050	SM00411	bacterial (prokaryotic) histone like domain
A9E81_RS09055	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS09055	SM00464	Found in ATP-dependent protease La (LON)
A9E81_RS09060	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS09060	SM00994	ClpX C4-type zinc finger
A9E81_RS09060	SM01086	C-terminal, D2-small domain, of ClpB protein
A9E81_RS09100	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS09105	SM00358	Double-stranded RNA binding motif
A9E81_RS09105	SM00535	Ribonuclease III family
A9E81_RS09120	SM00838	Elongation factor G C-terminus
A9E81_RS09145	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9E81_RS09200	SM00155	Phospholipase D. Active site motifs.
A9E81_RS09210	SM00367	Leucine-rich repeat - CC (cysteine-containing) subfamily
A9E81_RS09260	SM00460	Transglutaminase/protease-like homologues
A9E81_RS09320	SM00073	Histidine Phosphotransfer domain
A9E81_RS09320	SM00387	Histidine kinase-like ATPases
A9E81_RS09320	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS09320	SM00448	cheY-homologous receiver domain
A9E81_RS09370	SM00487	DEAD-like helicases superfamily
A9E81_RS09370	SM00491	A9E81_RS09370
A9E81_RS09445	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS09465	SM00825	Beta-ketoacyl synthase
A9E81_RS09500	SM00421	helix_turn_helix, Lux Regulon
A9E81_RS09510	SM00368	Leucine rich repeat, ribonuclease inhibitor type
A9E81_RS09520	SM00222	Sec7 domain
A9E81_RS09550	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
A9E81_RS09560	SM00368	Leucine rich repeat, ribonuclease inhibitor type
A9E81_RS09690	SM00028	Tetratricopeptide repeats
A9E81_RS09750	SM00925	MltA specific insert domain
A9E81_RS09790	SM01323	A9E81_RS09790
A9E81_RS09810	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS09825	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A9E81_RS09825	SM00954	Region found in RelA / SpoT proteins
A9E81_RS09830	SM01409	A9E81_RS09830
A9E81_RS09835	SM00072	Guanylate kinase homologues.
A9E81_RS09885	SM00342	helix_turn_helix, arabinose operon control protein
A9E81_RS09890	SM00996	S-adenosyl-L-homocysteine hydrolase
A9E81_RS09890	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A9E81_RS09900	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A9E81_RS09905	SM00271	DnaJ molecular chaperone homology domain
A9E81_RS09930	SM00905	Dihydroneopterin aldolase
A9E81_RS09940	SM00836	DALR anticodon binding domain
A9E81_RS09940	SM01016	Arginyl tRNA synthetase N terminal dom
A9E81_RS09955	SM00487	DEAD-like helicases superfamily
A9E81_RS09955	SM00490	helicase superfamily c-terminal domain
A9E81_RS09975	SM01192	A9E81_RS09975
A9E81_RS09975	SM01193	A9E81_RS09975
A9E81_RS10000	SM00028	Tetratricopeptide repeats
A9E81_RS10020	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS10090	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS10120	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS10125	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS10295	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS10410	SM00357	Cold shock protein domain
A9E81_RS10415	SM00487	DEAD-like helicases superfamily
A9E81_RS10415	SM00490	helicase superfamily c-terminal domain
A9E81_RS10430	SM00100	Cyclic nucleotide-monophosphate binding domain
A9E81_RS10460	SM00248	ankyrin repeats
A9E81_RS10465	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9E81_RS10465	SM00091	PAS domain
A9E81_RS10465	SM00267	diguanylate cyclase
A9E81_RS10530	SM00448	cheY-homologous receiver domain
A9E81_RS10535	SM00091	PAS domain
A9E81_RS10535	SM00387	Histidine kinase-like ATPases
A9E81_RS10535	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS10535	SM00448	cheY-homologous receiver domain
A9E81_RS10565	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS10620	SM00342	helix_turn_helix, arabinose operon control protein
A9E81_RS10620	SM00871	Bacterial transcription activator, effector binding domain
A9E81_RS10665	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A9E81_RS10700	SM00823	Phosphopantetheine attachment site
A9E81_RS10705	SM00073	Histidine Phosphotransfer domain
A9E81_RS10705	SM00387	Histidine kinase-like ATPases
A9E81_RS10705	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS10705	SM00448	cheY-homologous receiver domain
A9E81_RS10710	SM00448	cheY-homologous receiver domain
A9E81_RS10730	SM00822	A9E81_RS10730
A9E81_RS10730	SM00823	Phosphopantetheine attachment site
A9E81_RS10730	SM00825	Beta-ketoacyl synthase
A9E81_RS10730	SM00826	A9E81_RS10730
A9E81_RS10765	SM00947	Carbonic anhydrase
A9E81_RS10835	SM00829	Enoylreductase
A9E81_RS10845	SM01324	A9E81_RS10845
A9E81_RS10905	SM00671	Sel1-like repeats.
A9E81_RS10990	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS11070	SM01230	A9E81_RS11070
A9E81_RS11090	SM00849	Metallo-beta-lactamase superfamily
A9E81_RS11090	SM01027	Beta-Casp domain
A9E81_RS11125	SM00271	DnaJ molecular chaperone homology domain
A9E81_RS11135	SM00563	Phosphate acyltransferases
A9E81_RS11190	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A9E81_RS11230	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS11280	SM00363	S4 RNA-binding domain
A9E81_RS11285	SM00316	Ribosomal protein S1-like RNA-binding domain
A9E81_RS11295	SM00487	DEAD-like helicases superfamily
A9E81_RS11295	SM00490	helicase superfamily c-terminal domain
A9E81_RS11300	SM00248	ankyrin repeats
A9E81_RS11310	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A9E81_RS11325	SM00463	Small MutS-related domain
A9E81_RS11330	SM00450	Rhodanese Homology Domain
A9E81_RS11365	SM01154	A9E81_RS11365
A9E81_RS11375	SM01130	A9E81_RS11375
A9E81_RS11420	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS11435	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS11485	SM00937	A9E81_RS11485
A9E81_RS11510	SM00271	DnaJ molecular chaperone homology domain
A9E81_RS11535	SM00487	DEAD-like helicases superfamily
A9E81_RS11535	SM00490	helicase superfamily c-terminal domain
A9E81_RS11580	SM00729	Elongator protein 3, MiaB family, Radical SAM
A9E81_RS11590	SM01207	A9E81_RS11590
A9E81_RS11610	SM00400	zinc finger
A9E81_RS11610	SM00493	A9E81_RS11610
A9E81_RS11610	SM00766	DNA primase DnaG DnaB-binding
A9E81_RS11670	SM00487	DEAD-like helicases superfamily
A9E81_RS11670	SM00490	helicase superfamily c-terminal domain
A9E81_RS11695	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS11715	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS11870	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS11905	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS11970	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS11990	SM00831	Cation transporter/ATPase, N-terminus
A9E81_RS12345	SM00248	ankyrin repeats
A9E81_RS12375	SM00448	cheY-homologous receiver domain
A9E81_RS12380	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A9E81_RS12380	SM00091	PAS domain
A9E81_RS12380	SM00387	Histidine kinase-like ATPases
A9E81_RS12380	SM00388	His Kinase A (phosphoacceptor) domain
A9E81_RS12515	SM00028	Tetratricopeptide repeats
A9E81_RS12515	SM00671	Sel1-like repeats.
A9E81_RS12580	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
A9E81_RS12605	SM00947	Carbonic anhydrase
A9E81_RS12635	SM00387	Histidine kinase-like ATPases
A9E81_RS12640	SM01236	A9E81_RS12640
A9E81_RS12690	SM00344	helix_turn_helix ASNC type
A9E81_RS12715	SM01119	A9E81_RS12715
A9E81_RS12725	SM00421	helix_turn_helix, Lux Regulon
A9E81_RS12745	SM00642	Alpha-amylase domain
A9E81_RS12765	SM00830	Chorismate mutase type II
A9E81_RS12830	SM00925	MltA specific insert domain
A9E81_RS12860	SM00342	helix_turn_helix, arabinose operon control protein
A9E81_RS12895	SM00220	Serine/Threonine protein kinases, catalytic domain
A9E81_RS12900	SM00421	helix_turn_helix, Lux Regulon
A9E81_RS12930	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS12955	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS12980	SM00857	Resolvase, N terminal domain
A9E81_RS13020	SM00861	Transketolase, pyrimidine binding domain
A9E81_RS13070	SM00470	ParB-like nuclease domain
A9E81_RS13100	SM00257	Lysin motif
A9E81_RS13115	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A9E81_RS13115	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A9E81_RS13115	SM00493	A9E81_RS13115
A9E81_RS13165	SM00864	Tubulin/FtsZ family, GTPase domain
A9E81_RS13165	SM00865	Tubulin/FtsZ family, C-terminal domain
A9E81_RS13170	SM00842	Cell division protein FtsA
A9E81_RS13215	SM00771	ZipA, C-terminal domain (FtsZ-binding)
A9E81_RS13235	SM00978	A9E81_RS13235
A9E81_RS13245	SM00851	MGS-like domain
A9E81_RS13245	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A9E81_RS13315	SM00671	Sel1-like repeats.
A9E81_RS13330	SM00052	Putative diguanylate phosphodiesterase
A9E81_RS13330	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9E81_RS13330	SM00091	PAS domain
A9E81_RS13330	SM00267	diguanylate cyclase
A9E81_RS13345	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A9E81_RS13345	SM00465	GIY-YIG type nucleases (URI domain)
A9E81_RS13350	SM00421	helix_turn_helix, Lux Regulon
A9E81_RS13350	SM00448	cheY-homologous receiver domain
A9E81_RS13360	SM00852	Probable molybdopterin binding domain
A9E81_RS13395	SM00267	diguanylate cyclase
A9E81_RS13415	SM00899	A9E81_RS13415
A9E81_RS13445	SM00878	Biotin carboxylase C-terminal domain
A9E81_RS13470	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS13475	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS13475	SM00962	SRP54-type protein, GTPase domain
A9E81_RS13475	SM00963	SRP54-type protein, helical bundle domain
A9E81_RS13540	SM01329	A9E81_RS13540
A9E81_RS13615	SM01340	A9E81_RS13615
A9E81_RS13620	SM00257	Lysin motif
A9E81_RS13620	SM00646	A9E81_RS13620
A9E81_RS13675	SM00411	bacterial (prokaryotic) histone like domain
A9E81_RS13680	SM00873	B3/4 domain
A9E81_RS13680	SM00874	tRNA synthetase B5 domain
A9E81_RS13680	SM00896	Ferredoxin-fold anticodon binding domain
A9E81_RS13705	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A9E81_RS13715	SM01152	A9E81_RS13715
A9E81_RS13720	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS13735	SM00100	Cyclic nucleotide-monophosphate binding domain
A9E81_RS13750	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A9E81_RS13800	SM00387	Histidine kinase-like ATPases
A9E81_RS13820	SM00028	Tetratricopeptide repeats
A9E81_RS13835	SM00479	A9E81_RS13835
A9E81_RS13885	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS13895	SM00493	A9E81_RS13895
A9E81_RS13915	SM00862	Transcriptional regulatory protein, C terminal
A9E81_RS13930	SM01091	Transporter associated domain
A9E81_RS13955	SM00316	Ribosomal protein S1-like RNA-binding domain
A9E81_RS13955	SM00322	K homology RNA-binding domain
A9E81_RS13960	SM01387	A9E81_RS13960
A9E81_RS13980	SM00316	Ribosomal protein S1-like RNA-binding domain
A9E81_RS13980	SM00322	K homology RNA-binding domain
A9E81_RS14030	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A9E81_RS14035	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A9E81_RS14095	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS14105	SM01103	A9E81_RS14105
A9E81_RS14160	SM00763	PrkA AAA domain
A9E81_RS14205	SM01301	A9E81_RS14205
A9E81_RS14235	SM00357	Cold shock protein domain
A9E81_RS14260	SM00504	Modified RING finger domain
A9E81_RS14280	SM00316	Ribosomal protein S1-like RNA-binding domain
A9E81_RS14280	SM00732	Likely ribonuclease with RNase H fold.
A9E81_RS14300	SM00450	Rhodanese Homology Domain
A9E81_RS14320	SM00670	Large family of predicted nucleotide-binding domains
A9E81_RS14325	SM01240	A9E81_RS14325
A9E81_RS14355	SM00028	Tetratricopeptide repeats
A9E81_RS14360	SM00357	Cold shock protein domain
A9E81_RS14380	SM00028	Tetratricopeptide repeats
A9E81_RS14390	SM00327	von Willebrand factor (vWF) type A domain
A9E81_RS14440	SM00487	DEAD-like helicases superfamily
A9E81_RS14440	SM00490	helicase superfamily c-terminal domain
A9E81_RS14470	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A9E81_RS14480	SM00870	A9E81_RS14480
A9E81_RS14515	SM00478	endonuclease III
A9E81_RS14515	SM00525	A9E81_RS14515
A9E81_RS14560	SM01228	A9E81_RS14560
A9E81_RS14575	SM00470	ParB-like nuclease domain
A9E81_RS14705	SM00530	Helix-turn-helix XRE-family like proteins 
A9E81_RS14750	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS14775	SM00650	Ribosomal RNA adenine dimethylases
A9E81_RS14790	SM00992	Hemimethylated DNA-binding protein YccV like
A9E81_RS14810	SM00357	Cold shock protein domain
A9E81_RS14810	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS14810	SM00959	Rho termination factor, N-terminal domain
A9E81_RS14875	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS14930	SM00411	bacterial (prokaryotic) histone like domain
A9E81_RS14940	SM00244	prohibitin homologues
A9E81_RS14980	SM00479	A9E81_RS14980
A9E81_RS15015	SM00919	Malic enzyme, NAD binding domain
A9E81_RS15015	SM01274	A9E81_RS15015
A9E81_RS15060	SM00434	DNA Topoisomerase IV
A9E81_RS15070	SM00382	ATPases associated with a variety of cellular activities
A9E81_RS15115	SM00749	bacterial OsmY and nodulation domain
A9E81_RS15120	SM00749	bacterial OsmY and nodulation domain
A9E81_RS15150	SM00100	Cyclic nucleotide-monophosphate binding domain
A9E81_RS15155	SM00235	Zinc-dependent metalloprotease
