locus-tag	class	description
CA940_RS00010	COG0592	DNA-directed DNA polymerase activity
CA940_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CA940_RS00020	COG0187	DNA topoisomerase II activity
CA940_RS00025	COG2957	Belongs to the agmatine deiminase family
CA940_RS00030	COG1166	arginine decarboxylase activity
CA940_RS00055	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CA940_RS00060	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CA940_RS00070	COG1741	Belongs to the pirin family
CA940_RS00080	COG1566	PFAM secretion protein HlyD family protein
CA940_RS00100	COG3227	Zinc metalloprotease (Elastase)
CA940_RS00135	COG0531	amino acid
CA940_RS00140	COG0306	phosphate transporter
CA940_RS00160	COG2234	aminopeptidase activity
CA940_RS00185	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CA940_RS00215	COG3781	membrane
CA940_RS00260	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CA940_RS00275	COG0583	DNA-binding transcription factor activity
CA940_RS00290	COG1943	Transposase
CA940_RS00325	COG0436	Aminotransferase
CA940_RS00330	COG0556	nucleotide-excision repair
CA940_RS00345	COG0069	glutamate synthase activity
CA940_RS00350	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
CA940_RS00355	COG3079	Belongs to the UPF0149 family
CA940_RS00360	COG0006	proline dipeptidase activity
CA940_RS00365	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CA940_RS00370	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CA940_RS00405	COG4067	protein conserved in archaea
CA940_RS00405	COG0189	ligase activity
CA940_RS00440	COG0557	exoribonuclease II activity
CA940_RS00445	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CA940_RS00470	COG2824	Alkylphosphonate utilization operon protein PhnA
CA940_RS00495	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CA940_RS00505	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CA940_RS00515	COG2252	PERMEase
CA940_RS00545	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CA940_RS00590	COG1116	anion transmembrane transporter activity
CA940_RS00595	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CA940_RS00615	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CA940_RS00630	COG3360	Dodecin
CA940_RS00640	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CA940_RS00665	COG0469	pyruvate kinase activity
CA940_RS00675	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CA940_RS00680	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CA940_RS00690	COG0339	signal peptide processing
CA940_RS00810	COG2354	Protein conserved in bacteria
CA940_RS00815	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CA940_RS00860	COG0583	DNA-binding transcription factor activity
CA940_RS00875	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CA940_RS00880	COG2814	Major facilitator Superfamily
CA940_RS00900	COG0501	Belongs to the peptidase M48B family
CA940_RS00935	COG1172	Belongs to the binding-protein-dependent transport system permease family
CA940_RS01020	COG2815	serine threonine protein kinase
CA940_RS01020	COG0515	serine threonine protein kinase
CA940_RS01040	COG0415	Belongs to the DNA photolyase family
CA940_RS01045	COG1346	cytolysis
CA940_RS01050	COG1380	Effector of murein hydrolase LrgA
CA940_RS01055	COG0583	DNA-binding transcription factor activity
CA940_RS01060	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CA940_RS01090	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CA940_RS01095	COG0583	DNA-binding transcription factor activity
CA940_RS01100	COG2274	protein secretion by the type I secretion system
CA940_RS01120	COG0531	amino acid
CA940_RS01130	COG3706	GGDEF domain
CA940_RS01135	COG2217	Heavy metal translocating P-type atpase
CA940_RS01140	COG0735	belongs to the Fur family
CA940_RS01150	COG1196	nuclear chromosome segregation
CA940_RS01190	COG1012	belongs to the aldehyde dehydrogenase family
CA940_RS01195	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CA940_RS01215	COG2066	Belongs to the glutaminase family
CA940_RS01220	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CA940_RS01230	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CA940_RS01250	COG1393	Belongs to the ArsC family
CA940_RS01260	COG0513	Belongs to the DEAD box helicase family
CA940_RS01270	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CA940_RS01295	COG1566	PFAM secretion protein HlyD family protein
CA940_RS01325	COG1573	uracil-dna glycosylase
CA940_RS01340	COG2132	Multicopper oxidase
CA940_RS01350	COG0598	Magnesium transport protein CorA
CA940_RS01360	COG0433	COG0433 Predicted ATPase
CA940_RS01370	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CA940_RS01375	COG1335	isochorismatase
CA940_RS01390	COG0697	spore germination
CA940_RS01395	COG2814	Major facilitator Superfamily
CA940_RS01400	COG0583	DNA-binding transcription factor activity
CA940_RS01420	COG2205	protein histidine kinase activity
CA940_RS01430	COG0583	DNA-binding transcription factor activity
CA940_RS01445	COG2226	methyltransferase
CA940_RS01465	COG4221	oxidoreductase activity
CA940_RS01480	COG1509	lysine 2,3-aminomutase activity
CA940_RS01515	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CA940_RS01530	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CA940_RS01535	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CA940_RS01540	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CA940_RS01600	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CA940_RS01650	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CA940_RS01800	COG0629	single-stranded DNA binding
CA940_RS01805	COG2814	Major facilitator Superfamily
CA940_RS01810	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS01820	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CA940_RS01825	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CA940_RS01835	COG1560	Kdo2-lipid A biosynthetic process
CA940_RS01850	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CA940_RS01865	COG0400	carboxylic ester hydrolase activity
CA940_RS01870	COG2867	negative regulation of translational initiation
CA940_RS01875	COG2914	Belongs to the UPF0125 (RnfH) family
CA940_RS01880	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CA940_RS01885	COG0735	belongs to the Fur family
CA940_RS01890	COG2199	diguanylate cyclase activity
CA940_RS01890	COG2203	Gaf domain
CA940_RS01915	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
CA940_RS01955	COG1704	LemA family
CA940_RS01960	COG0501	Belongs to the peptidase M48B family
CA940_RS01965	COG0842	Transport permease protein
CA940_RS01970	COG1131	(ABC) transporter
CA940_RS02005	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CA940_RS02015	COG0336	Belongs to the RNA methyltransferase TrmD family
CA940_RS02030	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CA940_RS02045	COG0531	amino acid
CA940_RS02085	COG1612	heme a metabolic process
CA940_RS02095	COG1999	signal sequence binding
CA940_RS02110	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CA940_RS02115	COG0363	glucosamine-6-phosphate deaminase activity
CA940_RS02120	COG0129	dihydroxy-acid dehydratase activity
CA940_RS02125	COG0837	glucose binding
CA940_RS02130	COG0800	Aldolase
CA940_RS02135	COG2814	Major facilitator Superfamily
CA940_RS02145	COG3655	Transcriptional regulator
CA940_RS02160	COG1278	Cold shock
CA940_RS02180	COG1566	PFAM secretion protein HlyD family protein
CA940_RS02195	COG1733	regulation of RNA biosynthetic process
CA940_RS02320	COG0477	Major facilitator Superfamily
CA940_RS02345	COG0439	Biotin carboxylase
CA940_RS02350	COG0511	ligase activity, forming carbon-carbon bonds
CA940_RS02365	COG5016	pyruvate
CA940_RS02365	COG0511	ligase activity, forming carbon-carbon bonds
CA940_RS02370	COG3227	Zinc metalloprotease (Elastase)
CA940_RS02380	COG3568	Endonuclease Exonuclease Phosphatase
CA940_RS02385	COG3588	fructose-bisphosphate aldolase
CA940_RS02405	COG1183	phosphatidylcholine synthase activity
CA940_RS02415	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CA940_RS02420	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CA940_RS02445	COG1363	Peptidase, m42
CA940_RS02455	COG0330	HflC and HflK could
CA940_RS02460	COG0330	HflC and HflK could
CA940_RS02475	COG1438	arginine binding
CA940_RS02480	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CA940_RS02485	COG0765	amino acid transport
CA940_RS02490	COG1126	abc transporter atp-binding protein
CA940_RS02500	COG0165	Argininosuccinate lyase
CA940_RS02505	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CA940_RS02520	COG0793	Belongs to the peptidase S41A family
CA940_RS02525	COG4942	peptidase
CA940_RS02545	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CA940_RS02550	COG0575	Belongs to the CDS family
CA940_RS02570	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CA940_RS02580	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CA940_RS02605	COG0667	Aldo Keto reductase
CA940_RS02635	COG0572	uridine kinase
CA940_RS02670	COG2009	succinate dehydrogenase
CA940_RS02675	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CA940_RS02680	COG1053	succinate dehydrogenase
CA940_RS02685	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CA940_RS02705	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CA940_RS02725	COG2814	Major facilitator Superfamily
CA940_RS02735	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CA940_RS02740	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CA940_RS02760	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CA940_RS02785	COG2076	Multidrug Resistance protein
CA940_RS02820	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CA940_RS02840	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS02845	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS02870	COG0700	Nucleoside recognition
CA940_RS02875	COG0739	heme binding
CA940_RS02880	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CA940_RS02905	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CA940_RS02915	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CA940_RS02925	COG0306	phosphate transporter
CA940_RS02930	COG1392	Phosphate transport regulator
CA940_RS02945	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CA940_RS02965	COG0606	chelatase, subunit chli
CA940_RS02970	COG2960	long-chain fatty acid transporting porin activity
CA940_RS02975	COG0347	Belongs to the P(II) protein family
CA940_RS02980	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CA940_RS03010	COG3243	poly(R)-hydroxyalkanoic acid synthase
CA940_RS03015	COG1959	2 iron, 2 sulfur cluster binding
CA940_RS03020	COG0719	Fe-S assembly protein
CA940_RS03025	COG0396	ATPase activity
CA940_RS03030	COG0719	Fe-S assembly protein
CA940_RS03035	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CA940_RS03040	COG0822	iron-sulfur transferase activity
CA940_RS03045	COG2151	metal-sulfur cluster biosynthetic enzyme
CA940_RS03050	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
CA940_RS03055	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
CA940_RS03070	COG1253	flavin adenine dinucleotide binding
CA940_RS03075	COG1064	alcohol dehydrogenase
CA940_RS03125	COG0519	Catalyzes the synthesis of GMP from XMP
CA940_RS03230	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CA940_RS03285	COG0708	Exodeoxyribonuclease III
CA940_RS03290	COG0708	Exodeoxyribonuclease III
CA940_RS03300	COG0281	malic enzyme
CA940_RS03315	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CA940_RS03320	COG0814	amino acid
CA940_RS03325	COG0814	amino acid
CA940_RS03340	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CA940_RS03345	COG1131	(ABC) transporter
CA940_RS03350	COG0842	Transport permease protein
CA940_RS03355	COG0842	Transport permease protein
CA940_RS03370	COG0477	Major facilitator Superfamily
CA940_RS03375	COG0741	lytic transglycosylase activity
CA940_RS03380	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CA940_RS03395	COG3220	belongs to the UPF0276 family
CA940_RS03415	COG4689	acetoacetate decarboxylase
CA940_RS03435	COG3220	belongs to the UPF0276 family
CA940_RS03465	COG1131	(ABC) transporter
CA940_RS03480	COG4232	protein-disulfide reductase activity
CA940_RS03495	COG0783	Belongs to the Dps family
CA940_RS03500	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CA940_RS03505	COG0187	DNA topoisomerase II activity
CA940_RS03535	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CA940_RS03550	COG1538	Outer membrane efflux protein
CA940_RS03555	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CA940_RS03560	COG0156	8-amino-7-oxononanoate synthase activity
CA940_RS03570	COG0488	(ABC) transporter
CA940_RS03620	COG1297	OPT oligopeptide transporter protein
CA940_RS03625	COG0642	Histidine kinase
CA940_RS03630	COG0745	RESPONSE REGULATOR receiver
CA940_RS03645	COG1823	symporter activity
CA940_RS03655	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CA940_RS03660	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CA940_RS03695	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CA940_RS03700	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CA940_RS03705	COG0628	permease
CA940_RS03730	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CA940_RS03740	COG0305	Participates in initiation and elongation during chromosome replication
CA940_RS03780	COG2827	Endonuclease containing a URI domain
CA940_RS03785	COG3104	oligopeptide transport
CA940_RS03805	COG0107	imidazoleglycerol-phosphate synthase activity
CA940_RS03815	COG1083	cytidylyl-transferase
CA940_RS03820	COG2089	acid synthase
CA940_RS03825	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CA940_RS03835	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CA940_RS03865	COG1088	dTDP-glucose 4,6-dehydratase activity
CA940_RS03890	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CA940_RS03920	COG0673	inositol 2-dehydrogenase activity
CA940_RS03950	COG2089	acid synthase
CA940_RS03960	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
CA940_RS03990	COG1086	Polysaccharide biosynthesis protein
CA940_RS03995	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CA940_RS04045	COG1696	Membrane protein involved in D-alanine export
CA940_RS04050	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS04065	COG1083	cytidylyl-transferase
CA940_RS04095	COG1696	Membrane protein involved in D-alanine export
CA940_RS04110	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CA940_RS04110	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CA940_RS04115	COG2091	lysine biosynthetic process via aminoadipic acid
CA940_RS04125	COG0037	tRNA processing
CA940_RS04145	COG1760	l-serine dehydratase
CA940_RS04155	COG2223	nitrite transmembrane transporter activity
CA940_RS04180	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CA940_RS04185	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CA940_RS04195	COG0659	secondary active sulfate transmembrane transporter activity
CA940_RS04200	COG1960	acyl-CoA dehydrogenase activity
CA940_RS04210	COG0574	Belongs to the PEP-utilizing enzyme family
CA940_RS04210	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CA940_RS04215	COG0475	glutathione-regulated potassium exporter activity
CA940_RS04230	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CA940_RS04235	COG1555	photosystem II stabilization
CA940_RS04240	COG1077	Cell shape determining protein MreB Mrl
CA940_RS04245	COG1792	Involved in formation and maintenance of cell shape
CA940_RS04250	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CA940_RS04275	COG0542	response to heat
CA940_RS04295	COG0705	Rhomboid family
CA940_RS04345	COG1999	signal sequence binding
CA940_RS04365	COG0512	Glutamine amidotransferase of anthranilate synthase
CA940_RS04370	COG1137	ATPase activity
CA940_RS04385	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CA940_RS04395	COG1127	ABC transporter
CA940_RS04400	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CA940_RS04405	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CA940_RS04420	COG5007	Belongs to the BolA IbaG family
CA940_RS04435	COG1136	(ABC) transporter
CA940_RS04440	COG0577	efflux transmembrane transporter activity
CA940_RS04465	COG0616	signal peptide processing
CA940_RS04490	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
CA940_RS04495	COG1138	Cytochrome C-type biogenesis protein
CA940_RS04515	COG3360	Dodecin
CA940_RS04535	COG1960	acyl-CoA dehydrogenase activity
CA940_RS04540	COG1024	Enoyl-CoA hydratase
CA940_RS04545	COG1024	Enoyl-CoA hydratase
CA940_RS04585	COG2340	Cysteine-rich secretory protein family
CA940_RS04595	COG3706	GGDEF domain
CA940_RS04620	COG1472	Belongs to the glycosyl hydrolase 3 family
CA940_RS04640	COG0204	Acyl-transferase
CA940_RS04645	COG0626	cystathionine gamma-synthase activity
CA940_RS04690	COG1194	a g-specific adenine glycosylase
CA940_RS04715	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CA940_RS04740	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
CA940_RS04790	COG1994	Peptidase M50
CA940_RS04795	COG0671	phosphoesterase, PA-phosphatase related
CA940_RS04815	COG0686	Belongs to the AlaDH PNT family
CA940_RS04870	COG0589	response to stress
CA940_RS04875	COG0196	riboflavin kinase activity
CA940_RS04880	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CA940_RS04890	COG0800	Aldolase
CA940_RS04920	COG0674	pyruvate-flavodoxin oxidoreductase activity
CA940_RS04920	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CA940_RS04925	COG1013	pyruvate-flavodoxin oxidoreductase activity
CA940_RS04930	COG0670	Belongs to the BI1 family
CA940_RS04935	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CA940_RS04945	COG1752	Esterase of the alpha-beta hydrolase superfamily
CA940_RS04950	COG1022	Amp-dependent synthetase and ligase
CA940_RS04955	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CA940_RS04975	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CA940_RS04985	COG0601	transmembrane transport
CA940_RS04990	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CA940_RS05035	COG0833	amino acid
CA940_RS05080	COG0629	single-stranded DNA binding
CA940_RS05235	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CA940_RS05345	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS05425	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CA940_RS05445	COG0242	peptide deformylase activity
CA940_RS05475	COG0582	viral genome integration into host DNA
CA940_RS05555	COG3177	Filamentation induced by cAMP protein fic
CA940_RS05595	COG3932	Exopolysaccharide synthesis, ExoD
CA940_RS05620	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CA940_RS05620	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CA940_RS05710	COG0741	lytic transglycosylase activity
CA940_RS05710	COG1388	LysM domain
CA940_RS05725	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CA940_RS05735	COG0318	PFAM AMP-dependent synthetase and ligase
CA940_RS05775	COG2070	2-Nitropropane dioxygenase
CA940_RS05805	COG1177	transmembrane transport
CA940_RS05810	COG1176	ABC-type spermidine putrescine transport system, permease component I
CA940_RS05815	COG3842	ATPase activity
CA940_RS05835	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CA940_RS05870	COG1231	oxidoreductase activity
CA940_RS05875	COG1051	belongs to the nudix hydrolase family
CA940_RS05890	COG3961	Belongs to the TPP enzyme family
CA940_RS05910	COG0697	spore germination
CA940_RS05935	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CA940_RS05960	COG1355	regulation of microtubule-based process
CA940_RS06000	COG4783	chaperone-mediated protein folding
CA940_RS06010	COG0307	riboflavin synthase, alpha
CA940_RS06015	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CA940_RS06015	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CA940_RS06040	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CA940_RS06070	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CA940_RS06075	COG1472	Belongs to the glycosyl hydrolase 3 family
CA940_RS06085	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CA940_RS06085	COG0140	phosphoribosyl-ATP diphosphatase activity
CA940_RS06090	COG0107	imidazoleglycerol-phosphate synthase activity
CA940_RS06095	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CA940_RS06110	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CA940_RS06115	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CA940_RS06120	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CA940_RS06135	COG1294	oxidase, subunit
CA940_RS06150	COG1278	Cold shock
CA940_RS06160	COG0442	prolyl-tRNA aminoacylation
CA940_RS06165	COG1846	Transcriptional regulator
CA940_RS06180	COG1280	lysine exporter protein (LysE YggA)
CA940_RS06230	COG1815	bacterial-type flagellum-dependent cell motility
CA940_RS06240	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CA940_RS06245	COG1749	Flagellar hook protein flgE
CA940_RS06250	COG4787	bacterial-type flagellum-dependent cell motility
CA940_RS06255	COG4786	Flagellar basal body rod
CA940_RS06305	COG3273	potassium ion transport
CA940_RS06305	COG0471	metal ion transport
CA940_RS06315	COG1132	(ABC) transporter
CA940_RS06330	COG0281	malic enzyme
CA940_RS06355	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
CA940_RS06380	COG0642	Histidine kinase
CA940_RS06395	COG0741	lytic transglycosylase activity
CA940_RS06395	COG1388	LysM domain
CA940_RS06405	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CA940_RS06435	COG1090	epimerase
CA940_RS06460	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CA940_RS06490	COG0673	inositol 2-dehydrogenase activity
CA940_RS06495	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
CA940_RS06500	COG2814	Major facilitator Superfamily
CA940_RS06505	COG2814	Major facilitator Superfamily
CA940_RS06510	COG4264	IucA IucC family
CA940_RS06565	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CA940_RS06585	COG0285	dihydrofolate synthase activity
CA940_RS06595	COG1286	toxin biosynthetic process
CA940_RS06600	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CA940_RS06615	COG0495	leucyl-tRNA aminoacylation
CA940_RS06620	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CA940_RS06630	COG1012	belongs to the aldehyde dehydrogenase family
CA940_RS06635	COG1250	3-hydroxyacyl-CoA dehydrogenase
CA940_RS06635	COG1024	Enoyl-CoA hydratase
CA940_RS06640	COG0183	Belongs to the thiolase family
CA940_RS06665	COG3156	type II secretion system protein K
CA940_RS06685	COG2165	general secretion pathway protein
CA940_RS06690	COG1459	type II secretion system
CA940_RS06695	COG0174	glutamine synthetase
CA940_RS06710	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CA940_RS06725	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CA940_RS06735	COG0673	inositol 2-dehydrogenase activity
CA940_RS06750	COG0772	Belongs to the SEDS family
CA940_RS06755	COG0768	penicillin binding
CA940_RS06775	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
CA940_RS06790	COG0300	oxidoreductase activity
CA940_RS06825	COG0482	sulfurtransferase activity
CA940_RS06850	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CA940_RS06855	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CA940_RS06860	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS06865	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CA940_RS06870	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CA940_RS06875	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CA940_RS06885	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CA940_RS06895	COG0084	hydrolase, TatD family'
CA940_RS06915	COG0463	Glycosyl transferase, family 2
CA940_RS06945	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CA940_RS06955	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CA940_RS06960	COG0372	Belongs to the citrate synthase family
CA940_RS06975	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CA940_RS06980	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CA940_RS06985	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CA940_RS07000	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CA940_RS07020	COG4221	oxidoreductase activity
CA940_RS07035	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CA940_RS07055	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CA940_RS07060	COG0295	cytidine deaminase activity
CA940_RS07075	COG0745	RESPONSE REGULATOR receiver
CA940_RS07090	COG1702	phosphate starvation-inducible protein PhoH
CA940_RS07095	COG0613	PHP domain protein
CA940_RS07100	COG0009	L-threonylcarbamoyladenylate synthase
CA940_RS07105	COG0180	Tryptophanyl-tRNA synthetase
CA940_RS07115	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CA940_RS07165	COG2814	Major facilitator Superfamily
CA940_RS07180	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CA940_RS07190	COG0436	Aminotransferase
CA940_RS07200	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CA940_RS07205	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CA940_RS07210	COG0653	protein targeting
CA940_RS07215	COG0494	nUDIX hydrolase
CA940_RS07230	COG0237	dephospho-CoA kinase activity
CA940_RS07240	COG2200	EAL domain
CA940_RS07250	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CA940_RS07260	COG0156	8-amino-7-oxononanoate synthase activity
CA940_RS07285	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CA940_RS07290	COG3264	Mechanosensitive ion channel
CA940_RS07290	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
CA940_RS07325	COG1522	sequence-specific DNA binding
CA940_RS07420	COG1196	nuclear chromosome segregation
CA940_RS07425	COG0308	aminopeptidase N
CA940_RS07450	COG0456	acetyltransferase
CA940_RS07455	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CA940_RS07460	COG0508	dehydrogenase complex catalyzes the overall conversion of
CA940_RS07475	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CA940_RS07485	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CA940_RS07490	COG1686	Belongs to the peptidase S11 family
CA940_RS07495	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CA940_RS07500	COG2921	Belongs to the UPF0250 family
CA940_RS07510	COG0586	Pfam SNARE associated Golgi protein
CA940_RS07520	COG3034	peptidoglycan biosynthetic process
CA940_RS07525	COG2274	protein secretion by the type I secretion system
CA940_RS07540	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CA940_RS07565	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CA940_RS07590	COG2079	MmgE PrpD family protein
CA940_RS07595	COG0372	Belongs to the citrate synthase family
CA940_RS07625	COG1981	membrane
CA940_RS07630	COG0861	Integral membrane protein TerC family
CA940_RS07640	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CA940_RS07675	COG3063	Type IV pilus biogenesis stability protein PilW
CA940_RS07705	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CA940_RS07710	COG0850	regulation of cytokinetic process
CA940_RS07715	COG0318	PFAM AMP-dependent synthetase and ligase
CA940_RS07720	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CA940_RS07730	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CA940_RS07775	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CA940_RS07790	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CA940_RS07810	COG0352	thiamine-phosphate diphosphorylase activity
CA940_RS07845	COG0824	Thioesterase
CA940_RS07875	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
CA940_RS07880	COG2902	Dehydrogenase
CA940_RS07885	COG1376	ErfK ybiS ycfS ynhG family protein
CA940_RS07890	COG1012	belongs to the aldehyde dehydrogenase family
CA940_RS07895	COG1183	phosphatidylcholine synthase activity
CA940_RS07950	COG1388	LysM domain
CA940_RS07950	COG1376	ErfK ybiS ycfS ynhG family protein
CA940_RS07955	COG1024	Enoyl-CoA hydratase
CA940_RS07955	COG1250	3-hydroxyacyl-CoA dehydrogenase
CA940_RS07960	COG0183	Belongs to the thiolase family
CA940_RS07995	COG5654	RES domain protein
CA940_RS08010	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CA940_RS08015	COG0494	nUDIX hydrolase
CA940_RS08020	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CA940_RS08025	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CA940_RS08030	COG0454	-acetyltransferase
CA940_RS08040	COG0789	Transcriptional regulator
CA940_RS08055	COG0456	acetyltransferase
CA940_RS08055	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CA940_RS08060	COG1132	(ABC) transporter
CA940_RS08065	COG0488	(ABC) transporter
CA940_RS08080	COG0768	penicillin binding
CA940_RS08110	COG0429	hydrolase of the alpha beta-hydrolase fold
CA940_RS08120	COG2217	Heavy metal translocating P-type atpase
CA940_RS08140	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CA940_RS08150	COG0438	transferase activity, transferring glycosyl groups
CA940_RS08160	COG0277	FAD linked oxidase domain protein
CA940_RS08160	COG0247	lactate metabolic process
CA940_RS08180	COG0477	Major facilitator Superfamily
CA940_RS08190	COG2119	membrane
CA940_RS08200	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CA940_RS08215	COG3038	cytochrome b561
CA940_RS08220	COG2353	YceI-like domain
CA940_RS08240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CA940_RS08245	COG0673	inositol 2-dehydrogenase activity
CA940_RS08250	COG2814	Major facilitator Superfamily
CA940_RS08305	COG4953	penicillin-binding protein 1C
CA940_RS08310	COG2373	Large extracellular alpha-helical protein
CA940_RS08345	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CA940_RS08350	COG0151	Belongs to the GarS family
CA940_RS08370	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CA940_RS08375	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CA940_RS08400	COG0300	oxidoreductase activity
CA940_RS08430	COG3144	bacterial-type flagellum assembly
CA940_RS08440	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CA940_RS08445	COG0531	amino acid
CA940_RS08490	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CA940_RS08495	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CA940_RS08505	COG3138	arginine N-succinyltransferase
CA940_RS08585	COG2894	cell division
CA940_RS08595	COG1960	acyl-CoA dehydrogenase activity
CA940_RS08600	COG2267	carboxylic ester hydrolase activity
CA940_RS08610	COG3842	ATPase activity
CA940_RS08615	COG0395	ABC-type sugar transport system, permease component
CA940_RS08620	COG1175	transmembrane transport
CA940_RS08630	COG0038	chloride channel
CA940_RS08635	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CA940_RS08635	COG0512	Glutamine amidotransferase of anthranilate synthase
CA940_RS08640	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CA940_RS08665	COG0316	Belongs to the HesB IscA family
CA940_RS08675	COG1104	cysteine desulfurase activity
CA940_RS08680	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
CA940_RS08690	COG0616	signal peptide processing
CA940_RS08695	COG0542	response to heat
CA940_RS08710	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CA940_RS08720	COG3164	Protein of unknown function
CA940_RS08740	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CA940_RS08750	COG1677	Flagellar hook-basal body complex protein FliE
CA940_RS08765	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CA940_RS08775	COG1674	ftsk spoiiie
CA940_RS08780	COG0492	ferredoxin-NADP+ reductase activity
CA940_RS08790	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CA940_RS08790	COG0425	Belongs to the sulfur carrier protein TusA family
CA940_RS08800	COG0312	modulator of DNA gyrase
CA940_RS08815	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CA940_RS08815	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CA940_RS08850	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CA940_RS08925	COG0583	DNA-binding transcription factor activity
CA940_RS08985	COG2911	Protein conserved in bacteria
CA940_RS08990	COG0113	porphobilinogen synthase activity
CA940_RS09005	COG0527	aspartate kinase activity
CA940_RS09010	COG1074	ATP-dependent DNA helicase activity
CA940_RS09015	COG0489	protein tyrosine kinase activity
CA940_RS09025	COG0583	DNA-binding transcription factor activity
CA940_RS09030	COG2814	Major facilitator Superfamily
CA940_RS09070	COG1960	acyl-CoA dehydrogenase activity
CA940_RS09075	COG0183	Belongs to the thiolase family
CA940_RS09085	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CA940_RS09105	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CA940_RS09115	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CA940_RS09120	COG2011	ABC-type metal ion transport system permease component
CA940_RS09125	COG1464	Belongs to the NlpA lipoprotein family
CA940_RS09140	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CA940_RS09145	COG0751	glycine-tRNA ligase activity
CA940_RS09160	COG0210	DNA helicase
CA940_RS09180	COG0189	ligase activity
CA940_RS09205	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CA940_RS09220	COG0572	uridine kinase
CA940_RS09255	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CA940_RS09300	COG0488	(ABC) transporter
CA940_RS09325	COG2951	lytic endotransglycosylase activity
CA940_RS09335	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
CA940_RS09375	COG0346	lactoylglutathione lyase activity
CA940_RS09420	COG0657	acetylesterase activity
CA940_RS09450	COG0038	chloride channel
CA940_RS09460	COG3012	SEC-C Motif Domain Protein
CA940_RS09470	COG0714	Associated with various cellular activities
CA940_RS09485	COG2850	peptidyl-arginine hydroxylation
CA940_RS09510	COG3101	peptidyl-lysine hydroxylation
CA940_RS09520	COG0625	glutathione transferase activity
CA940_RS09545	COG0205	6-phosphofructokinase activity
CA940_RS09550	COG4969	Belongs to the N-Me-Phe pilin family
CA940_RS09555	COG4969	Belongs to the N-Me-Phe pilin family
CA940_RS09560	COG0271	Belongs to the BolA IbaG family
CA940_RS09565	COG0531	amino acid
CA940_RS09570	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CA940_RS09585	COG1214	PFAM Peptidase M22, glycoprotease
CA940_RS09590	COG1199	ATP-dependent helicase activity
CA940_RS09595	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CA940_RS09620	COG2313	pseudouridylate synthase activity
CA940_RS09645	COG3850	Histidine kinase
CA940_RS09645	COG5002	protein histidine kinase activity
CA940_RS09655	COG0745	RESPONSE REGULATOR receiver
CA940_RS09675	COG3550	peptidyl-serine autophosphorylation
CA940_RS09725	COG1250	3-hydroxyacyl-CoA dehydrogenase
CA940_RS09745	COG5212	phosphodiesterase
CA940_RS09770	COG2030	dehydratase
CA940_RS09780	COG0427	acetyl-CoA hydrolase
CA940_RS09810	COG4948	Mandelate Racemase Muconate Lactonizing
CA940_RS09890	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CA940_RS09890	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CA940_RS09905	COG0625	glutathione transferase activity
CA940_RS09910	COG1764	response to oxidative stress
CA940_RS09945	COG3774	pathogenesis
CA940_RS09990	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CA940_RS10025	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CA940_RS10055	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CA940_RS10060	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CA940_RS10065	COG1862	Preprotein translocase
CA940_RS10085	COG0488	(ABC) transporter
CA940_RS10090	COG3577	Aspartyl protease
CA940_RS10100	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CA940_RS10115	COG1561	YicC-like family, N-terminal region
CA940_RS10165	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CA940_RS10175	COG0505	Belongs to the CarA family
CA940_RS10195	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CA940_RS10205	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CA940_RS10220	COG0628	permease
CA940_RS10255	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CA940_RS10275	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CA940_RS10280	COG2885	chlorophyll binding
CA940_RS10285	COG3218	ABC-type transport auxiliary lipoprotein component
CA940_RS10295	COG1127	ABC transporter
CA940_RS10300	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CA940_RS10355	COG0582	viral genome integration into host DNA
CA940_RS10415	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CA940_RS10420	COG4962	Type ii secretion system protein e
CA940_RS10435	COG3451	type IV secretory pathway VirB4
CA940_RS10455	COG2948	multi-organism process
CA940_RS10470	COG3846	protein secretion by the type IV secretion system
CA940_RS10480	COG4959	Type IV secretory pathway protease TraF
CA940_RS10560	COG1132	(ABC) transporter
CA940_RS10570	COG3158	transport of potassium into the cell
CA940_RS10575	COG1278	Cold shock
CA940_RS10580	COG0513	Belongs to the DEAD box helicase family
CA940_RS10615	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CA940_RS10640	COG1733	regulation of RNA biosynthetic process
CA940_RS10645	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS10675	COG5507	3-demethylubiquinone-9 3-methyltransferase
CA940_RS10700	COG1132	(ABC) transporter
CA940_RS10705	COG1196	nuclear chromosome segregation
CA940_RS10710	COG1196	nuclear chromosome segregation
CA940_RS10715	COG1413	lyase activity
CA940_RS10720	COG1196	nuclear chromosome segregation
CA940_RS10725	COG1196	nuclear chromosome segregation
CA940_RS10730	COG1196	nuclear chromosome segregation
CA940_RS10735	COG0501	Belongs to the peptidase M48B family
CA940_RS10760	COG4977	sequence-specific DNA binding
CA940_RS10805	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CA940_RS10840	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS10840	COG3321	synthase
CA940_RS10840	COG0318	PFAM AMP-dependent synthetase and ligase
CA940_RS10840	COG0300	oxidoreductase activity
CA940_RS10840	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CA940_RS10845	COG0784	Response regulator, receiver
CA940_RS10845	COG2205	protein histidine kinase activity
CA940_RS10850	COG0784	Response regulator, receiver
CA940_RS10850	COG2198	Histidine kinase
CA940_RS10850	COG5002	protein histidine kinase activity
CA940_RS10855	COG4106	trans-aconitate 2-methyltransferase activity
CA940_RS10900	COG0071	Belongs to the small heat shock protein (HSP20) family
CA940_RS10910	COG0288	reversible hydration of carbon dioxide
CA940_RS10930	COG3104	oligopeptide transport
CA940_RS10980	COG0604	alcohol dehydrogenase
CA940_RS11030	COG4638	Rieske (2fe-2S)
CA940_RS11045	COG2171	N-acyltransferase activity
CA940_RS11075	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CA940_RS11090	COG0318	PFAM AMP-dependent synthetase and ligase
CA940_RS11100	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS11105	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CA940_RS11110	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CA940_RS11115	COG2814	Major facilitator Superfamily
CA940_RS11130	COG1132	(ABC) transporter
CA940_RS11175	COG1301	dicarboxylic acid transport
CA940_RS11185	COG0586	Pfam SNARE associated Golgi protein
CA940_RS11195	COG0519	Catalyzes the synthesis of GMP from XMP
CA940_RS11210	COG0174	glutamine synthetase
CA940_RS11230	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CA940_RS11245	COG2823	Periplasmic or secreted lipoprotein
CA940_RS11250	COG3243	poly(R)-hydroxyalkanoic acid synthase
CA940_RS11260	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CA940_RS11325	COG0584	glycerophosphoryl diester phosphodiesterase
CA940_RS11355	COG0625	glutathione transferase activity
CA940_RS11375	COG1136	(ABC) transporter
CA940_RS11380	COG4591	ABC-type transport system involved in lipoprotein release permease component
CA940_RS11415	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CA940_RS11445	COG0546	phosphoglycolate phosphatase activity
CA940_RS11450	COG0564	pseudouridine synthase activity
CA940_RS11465	COG1530	ribonuclease E activity
CA940_RS11475	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CA940_RS11490	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CA940_RS11500	COG2890	protein-(glutamine-N5) methyltransferase activity
CA940_RS11510	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CA940_RS11515	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CA940_RS11570	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS11595	COG0814	amino acid
CA940_RS11640	COG0142	geranyltranstransferase activity
CA940_RS11645	COG2226	methyltransferase
CA940_RS11650	COG1040	competence protein
CA940_RS11675	COG2890	protein-(glutamine-N5) methyltransferase activity
CA940_RS11680	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CA940_RS11690	COG1519	Transferase
CA940_RS11695	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CA940_RS11705	COG3240	lipase activity
CA940_RS11720	COG0513	Belongs to the DEAD box helicase family
CA940_RS11730	COG0446	pyridine nucleotide-disulphide oxidoreductase
CA940_RS11730	COG1902	pentaerythritol trinitrate reductase activity
CA940_RS11740	COG2032	superoxide dismutase activity
CA940_RS11750	COG0450	alkyl hydroperoxide reductase
CA940_RS11765	COG0494	nUDIX hydrolase
CA940_RS11770	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CA940_RS11775	COG0154	amidase activity
CA940_RS11780	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CA940_RS11800	COG0358	DNA primase activity
CA940_RS11840	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CA940_RS11870	COG3550	peptidyl-serine autophosphorylation
CA940_RS11875	COG3550	peptidyl-serine autophosphorylation
CA940_RS11880	COG0582	viral genome integration into host DNA
CA940_RS11890	COG1574	metal-dependent hydrolase with the TIM-barrel fold
CA940_RS11900	COG3321	synthase
CA940_RS11900	COG0604	alcohol dehydrogenase
CA940_RS12205	COG0583	DNA-binding transcription factor activity
CA940_RS12210	COG0436	Aminotransferase
CA940_RS12295	COG0435	Glutathione S-transferase
CA940_RS12330	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
CA940_RS12375	COG4565	transcriptional regulatory protein
CA940_RS12380	COG4251	negative regulation of phosphorylation
CA940_RS12415	COG0463	Glycosyl transferase, family 2
CA940_RS12425	COG0697	spore germination
CA940_RS12435	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CA940_RS12450	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CA940_RS12455	COG0756	dUTP diphosphatase activity
CA940_RS12460	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CA940_RS12465	COG2003	Belongs to the UPF0758 family
CA940_RS12485	COG0517	IMP dehydrogenase activity
CA940_RS12520	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CA940_RS12555	COG0288	reversible hydration of carbon dioxide
CA940_RS12585	COG2205	protein histidine kinase activity
CA940_RS12585	COG0784	Response regulator, receiver
CA940_RS12595	COG1413	lyase activity
CA940_RS12600	COG1196	nuclear chromosome segregation
CA940_RS12620	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CA940_RS12635	COG2271	Major facilitator Superfamily
CA940_RS12640	COG1522	sequence-specific DNA binding
CA940_RS12720	COG1196	nuclear chromosome segregation
CA940_RS12730	COG1605	Chorismate mutase
CA940_RS12730	COG0077	Prephenate dehydratase
CA940_RS12740	COG0436	Aminotransferase
CA940_RS12750	COG1959	2 iron, 2 sulfur cluster binding
CA940_RS12805	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CA940_RS12825	COG0697	spore germination
CA940_RS12845	COG0484	heat shock protein binding
CA940_RS12910	COG4974	Belongs to the 'phage' integrase family
CA940_RS12940	COG3189	MarR family transcriptional regulator
CA940_RS12960	COG1960	acyl-CoA dehydrogenase activity
CA940_RS12990	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
CA940_RS13010	COG2027	D-alanyl-D-alanine carboxypeptidase
CA940_RS13015	COG1475	DNA binding
CA940_RS13050	COG0758	DNA mediated transformation
CA940_RS13065	COG2755	lipolytic protein G-D-S-L family
CA940_RS13065	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CA940_RS13105	COG3590	peptidase
CA940_RS13115	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CA940_RS13135	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CA940_RS13145	COG0772	Belongs to the SEDS family
CA940_RS13150	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CA940_RS13155	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CA940_RS13160	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CA940_RS13170	COG1196	nuclear chromosome segregation
CA940_RS13205	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CA940_RS13215	COG2081	HI0933 family
CA940_RS13225	COG0795	lipopolysaccharide-transporting ATPase activity
CA940_RS13230	COG0795	lipopolysaccharide-transporting ATPase activity
CA940_RS13240	COG2927	DNA polymerase III (CHI subunit)
CA940_RS13250	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CA940_RS13285	COG1376	ErfK ybiS ycfS ynhG family protein
CA940_RS13300	COG0322	excinuclease ABC activity
CA940_RS13305	COG2197	response regulator
CA940_RS13345	COG0012	GTP binding
CA940_RS13350	COG5001	Diguanylate cyclase
CA940_RS13350	COG3300	MHYT domain
CA940_RS13355	COG0142	geranyltranstransferase activity
CA940_RS13365	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CA940_RS13375	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CA940_RS13405	COG0439	Biotin carboxylase
CA940_RS13425	COG2177	Part of the ABC transporter FtsEX involved in
CA940_RS13430	COG2884	Cell division ATP-binding protein ftsE
CA940_RS13435	COG0552	protein localization to endoplasmic reticulum
CA940_RS13440	COG0612	Peptidase, M16
CA940_RS13445	COG0612	Peptidase, M16
CA940_RS13450	COG0742	ribosomal rna small subunit methyltransferase
CA940_RS13470	COG4085	toxin activity
CA940_RS13470	COG0737	Belongs to the 5'-nucleotidase family
CA940_RS13470	COG1525	nuclease
CA940_RS13475	COG2226	methyltransferase
CA940_RS13480	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CA940_RS13485	COG0189	ligase activity
CA940_RS13485	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CA940_RS13505	COG0473	3-isopropylmalate dehydrogenase activity
CA940_RS13505	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CA940_RS13545	COG2217	Heavy metal translocating P-type atpase
CA940_RS13555	COG2226	methyltransferase
CA940_RS13565	COG0859	PFAM glycosyl transferase family 9
CA940_RS13585	COG0860	N-Acetylmuramoyl-L-alanine amidase
CA940_RS13590	COG0802	atpase or kinase
CA940_RS13595	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CA940_RS13595	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CA940_RS13600	COG2969	positive regulation of protein catabolic process
CA940_RS13605	COG0625	glutathione transferase activity
CA940_RS13610	COG2857	Cytochrome c1
CA940_RS13615	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CA940_RS13620	COG0723	plastoquinol--plastocyanin reductase activity
CA940_RS13625	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CA940_RS13640	COG0776	regulation of translation
CA940_RS13715	COG1902	pentaerythritol trinitrate reductase activity
CA940_RS13720	COG0640	Transcriptional regulator
CA940_RS13735	COG2860	membrane
CA940_RS13740	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CA940_RS13745	COG0343	queuine tRNA-ribosyltransferase activity
CA940_RS13760	COG0156	8-amino-7-oxononanoate synthase activity
CA940_RS13805	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CA940_RS13855	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CA940_RS13900	COG4536	flavin adenine dinucleotide binding
CA940_RS13905	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CA940_RS13910	COG0537	adenosine 5'-monophosphoramidase activity
CA940_RS13950	COG2251	uridine kinase activity
CA940_RS13950	COG0195	Participates in both transcription termination and antitermination
CA940_RS14000	COG1034	ATP synthesis coupled electron transport
CA940_RS14005	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CA940_RS14020	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CA940_RS14045	COG0149	triose-phosphate isomerase activity
CA940_RS14060	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CA940_RS14075	COG1534	Rna-binding protein
CA940_RS14080	COG2755	lipolytic protein G-D-S-L family
CA940_RS14080	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CA940_RS14100	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CA940_RS14110	COG3104	oligopeptide transport
CA940_RS14130	COG0308	aminopeptidase N
CA940_RS14135	COG2766	serine protein kinase
CA940_RS14145	COG2719	SpoVR family
CA940_RS14155	COG2234	aminopeptidase activity
CA940_RS14165	COG0210	DNA helicase
CA940_RS14170	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CA940_RS14185	COG1217	gtp-binding protein TYPA
CA940_RS14195	COG0497	DNA recombination
CA940_RS14215	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CA940_RS14235	COG5113	peptidyl-tyrosine sulfation
CA940_RS14255	COG2183	response to ionizing radiation
CA940_RS14265	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CA940_RS14285	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CA940_RS14290	COG0477	Major facilitator Superfamily
CA940_RS14295	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CA940_RS14300	COG0516	GMP reductase activity
CA940_RS14335	COG1278	Cold shock
CA940_RS14365	COG2304	oxidoreductase activity
CA940_RS14380	COG0714	Associated with various cellular activities
CA940_RS14400	COG1028	Short-chain dehydrogenase reductase Sdr
CA940_RS14415	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CA940_RS14435	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CA940_RS14440	COG0730	response to heat
CA940_RS14445	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
CA940_RS14455	COG0252	asparaginase activity
CA940_RS14465	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CA940_RS14470	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CA940_RS14480	COG0598	Magnesium transport protein CorA
CA940_RS14490	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CA940_RS14495	COG2878	Part of a membrane complex involved in electron transport
CA940_RS14505	COG0163	prenyltransferase activity
CA940_RS14525	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CA940_RS14525	COG0662	Cupin 2, conserved barrel domain protein
CA940_RS14535	COG0445	tRNA wobble uridine modification
CA940_RS14540	COG0357	Ribosomal RNA small subunit methyltransferase G
CA940_RS14545	COG1192	Involved in chromosome partitioning
CA940_RS14550	COG1475	DNA binding
CA940_RS14565	COG1845	cytochrome c oxidase, subunit III
CA940_RS14570	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
CA940_RS14575	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CA940_RS14580	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CA940_RS14585	COG2010	Cytochrome c
CA940_RS14630	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CA940_RS14640	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CA940_RS14655	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CA940_RS14655	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CA940_RS14745	COG0577	efflux transmembrane transporter activity
CA940_RS14745	COG1136	(ABC) transporter
CA940_RS14750	COG0577	efflux transmembrane transporter activity
CA940_RS14750	COG1136	(ABC) transporter
CA940_RS14785	COG0805	protein transport
CA940_RS14800	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CA940_RS14800	COG0543	2 iron, 2 sulfur cluster binding
CA940_RS14820	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CA940_RS14830	COG1560	Kdo2-lipid A biosynthetic process
CA940_RS14845	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CA940_RS14865	COG1132	(ABC) transporter
CA940_RS14920	COG0776	regulation of translation
CA940_RS14930	COG0330	HflC and HflK could
CA940_RS14975	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CA940_RS14980	COG0450	alkyl hydroperoxide reductase
CA940_RS14985	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CA940_RS14990	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CA940_RS14995	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CA940_RS15000	COG1234	tRNA 3'-trailer cleavage
CA940_RS15010	COG0281	malic enzyme
CA940_RS15015	COG0009	L-threonylcarbamoyladenylate synthase
CA940_RS15040	COG3227	Zinc metalloprotease (Elastase)
CA940_RS15090	COG0356	it plays a direct role in the translocation of protons across the membrane
CA940_RS15105	COG2823	Periplasmic or secreted lipoprotein
CA940_RS15110	COG2823	Periplasmic or secreted lipoprotein
CA940_RS15115	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CA940_RS15125	COG3107	peptidoglycan biosynthetic process
CA940_RS15130	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CA940_RS15165	COG0706	membrane insertase activity
CA940_RS15230	COG3655	Transcriptional regulator
CA940_RS15240	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CA940_RS15260	COG0662	Cupin 2, conserved barrel domain protein
CA940_RS15300	COG0758	DNA mediated transformation
CA940_RS15325	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CA940_RS15330	COG2135	peptidase activity
CA940_RS15375	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CA940_RS15395	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding