locus-tag class description APT55_RS00005 PF00308 Bacterial dnaA protein APT55_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix APT55_RS00005 PF11638 DnaA N-terminal domain APT55_RS00015 PF01934 Protein of unknown function DUF86 APT55_RS00025 PF18073 Rubredoxin metal binding domain APT55_RS00025 PF06745 KaiC APT55_RS00030 PF00072 Response regulator receiver domain APT55_RS00030 PF00486 Transcriptional regulatory protein, C terminal APT55_RS00035 PF00150 Cellulase (glycosyl hydrolase family 5) APT55_RS00065 PF03170 Bacterial cellulose synthase subunit APT55_RS00070 PF07238 PilZ domain APT55_RS00070 PF00535 Glycosyl transferase family 2 APT55_RS00070 PF03552 Cellulose synthase APT55_RS00080 PF00486 Transcriptional regulatory protein, C terminal APT55_RS00080 PF00072 Response regulator receiver domain APT55_RS00090 PF02142 MGS-like domain APT55_RS00090 PF00781 Diacylglycerol kinase catalytic domain APT55_RS00095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS00095 PF00072 Response regulator receiver domain APT55_RS00095 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00095 PF00672 HAMP domain APT55_RS00095 PF01627 Hpt domain APT55_RS00100 PF00563 EAL domain APT55_RS00100 PF01590 GAF domain APT55_RS00100 PF00360 Phytochrome region APT55_RS00100 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS00130 PF01967 MoaC family APT55_RS00140 PF00459 Inositol monophosphatase family APT55_RS00155 PF00582 Universal stress protein family APT55_RS00160 PF00815 Histidinol dehydrogenase APT55_RS00165 PF01649 Ribosomal protein S20 APT55_RS00170 PF01026 TatD related DNase APT55_RS00175 PF04560 RNA polymerase Rpb2, domain 7 APT55_RS00175 PF10385 RNA polymerase beta subunit external 1 domain APT55_RS00175 PF04561 RNA polymerase Rpb2, domain 2 APT55_RS00175 PF04563 RNA polymerase beta subunit APT55_RS00175 PF04565 RNA polymerase Rpb2, domain 3 APT55_RS00175 PF00562 RNA polymerase Rpb2, domain 6 APT55_RS00180 PF04983 RNA polymerase Rpb1, domain 3 APT55_RS00180 PF00623 RNA polymerase Rpb1, domain 2 APT55_RS00180 PF04997 RNA polymerase Rpb1, domain 1 APT55_RS00185 PF04998 RNA polymerase Rpb1, domain 5 APT55_RS00185 PF04983 RNA polymerase Rpb1, domain 3 APT55_RS00185 PF05000 RNA polymerase Rpb1, domain 4 APT55_RS00195 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APT55_RS00200 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APT55_RS00205 PF01165 Ribosomal protein S21 APT55_RS00210 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00210 PF00989 PAS fold APT55_RS00210 PF11808 Phosphate regulon sensor protein PhoR APT55_RS00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS00220 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APT55_RS00220 PF01502 Phosphoribosyl-AMP cyclohydrolase APT55_RS00225 PF00480 ROK family APT55_RS00260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT55_RS00265 PF00005 ABC transporter APT55_RS00275 PF01596 O-methyltransferase APT55_RS00285 PF01888 CbiD APT55_RS00290 PF00958 GMP synthase C terminal domain APT55_RS00290 PF00117 Glutamine amidotransferase class-I APT55_RS00290 PF02540 NAD synthase APT55_RS00295 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APT55_RS00305 PF11909 NADH-quinone oxidoreductase cyanobacterial subunit N APT55_RS00310 PF07690 Major Facilitator Superfamily APT55_RS00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS00340 PF00733 Asparagine synthase APT55_RS00340 PF13537 Glutamine amidotransferase domain APT55_RS00350 PF03062 MBOAT, membrane-bound O-acyltransferase family APT55_RS00365 PF00365 Phosphofructokinase APT55_RS00370 PF02092 Glycyl-tRNA synthetase beta subunit APT55_RS00385 PF02887 Pyruvate kinase, alpha/beta domain APT55_RS00385 PF00224 Pyruvate kinase, barrel domain APT55_RS00385 PF00391 PEP-utilising enzyme, mobile domain APT55_RS00390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00390 PF16736 Single Cache-like APT55_RS00390 PF00989 PAS fold APT55_RS00390 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00410 PF08245 Mur ligase middle domain APT55_RS00410 PF02875 Mur ligase family, glutamate ligase domain APT55_RS00410 PF08443 RimK-like ATP-grasp domain APT55_RS00420 PF03575 Peptidase family S51 APT55_RS00430 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS00430 PF07724 AAA domain (Cdc48 subfamily) APT55_RS00430 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS00430 PF17871 AAA lid domain APT55_RS00430 PF02861 Clp amino terminal domain, pathogenicity island component APT55_RS00440 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS00440 PF08369 Proto-chlorophyllide reductase 57 kD subunit APT55_RS00485 PF01841 Transglutaminase-like superfamily APT55_RS00515 PF01476 LysM domain APT55_RS00515 PF03734 L,D-transpeptidase catalytic domain APT55_RS00525 PF13439 Glycosyltransferase Family 4 APT55_RS00525 PF00534 Glycosyl transferases group 1 APT55_RS00530 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT55_RS00530 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT55_RS00540 PF01225 Mur ligase family, catalytic domain APT55_RS00540 PF08245 Mur ligase middle domain APT55_RS00540 PF02875 Mur ligase family, glutamate ligase domain APT55_RS00545 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APT55_RS00545 PF01565 FAD binding domain APT55_RS00550 PF02575 YbaB/EbfC DNA-binding family APT55_RS00560 PF00805 Pentapeptide repeats (8 copies) APT55_RS00560 PF00069 Protein kinase domain APT55_RS00565 PF02545 Maf-like protein APT55_RS00595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS00660 PF01551 Peptidase family M23 APT55_RS00660 PF08460 Bacterial SH3 domain APT55_RS00740 PF12965 Domain of unknown function (DUF3854) APT55_RS00765 PF02514 CobN/Magnesium Chelatase APT55_RS00770 PF00989 PAS fold APT55_RS00770 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APT55_RS00795 PF01113 Dihydrodipicolinate reductase, N-terminus APT55_RS00795 PF05173 Dihydrodipicolinate reductase, C-terminus APT55_RS00800 PF13193 AMP-binding enzyme C-terminal domain APT55_RS00800 PF00501 AMP-binding enzyme APT55_RS00805 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APT55_RS00805 PF03900 Porphobilinogen deaminase, C-terminal domain APT55_RS00810 PF05690 Thiazole biosynthesis protein ThiG APT55_RS00810 PF01266 FAD dependent oxidoreductase APT55_RS00820 PF13180 PDZ domain APT55_RS00830 PF14437 MafB19-like deaminase APT55_RS00835 PF00490 Delta-aminolevulinic acid dehydratase APT55_RS00845 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00845 PF00989 PAS fold APT55_RS00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00850 PF00106 short chain dehydrogenase APT55_RS00870 PF13545 Crp-like helix-turn-helix domain APT55_RS00875 PF00361 Proton-conducting membrane transporter APT55_RS00880 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus APT55_RS00880 PF00361 Proton-conducting membrane transporter APT55_RS00880 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT55_RS00885 PF00657 GDSL-like Lipase/Acylhydrolase APT55_RS00915 PF00082 Subtilase family APT55_RS00915 PF01483 Proprotein convertase P-domain APT55_RS00930 PF00344 SecY translocase APT55_RS00970 PF02233 NAD(P) transhydrogenase beta subunit APT55_RS00975 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT55_RS00975 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APT55_RS00975 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT55_RS00985 PF00468 Ribosomal protein L34 APT55_RS00990 PF00825 Ribonuclease P APT55_RS01000 PF02096 60Kd inner membrane protein APT55_RS01015 PF01434 Peptidase family M41 APT55_RS01015 PF06480 FtsH Extracellular APT55_RS01015 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS01015 PF17862 AAA+ lid domain APT55_RS01030 PF01329 Pterin 4 alpha carbinolamine dehydratase APT55_RS01050 PF01842 ACT domain APT55_RS01050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT55_RS01050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT55_RS01060 PF02091 Glycyl-tRNA synthetase alpha subunit APT55_RS01100 PF00534 Glycosyl transferases group 1 APT55_RS01100 PF08323 Starch synthase catalytic domain APT55_RS01105 PF08439 Oligopeptidase F APT55_RS01105 PF01432 Peptidase family M3 APT55_RS01135 PF01042 Endoribonuclease L-PSP APT55_RS01140 PF00293 NUDIX domain APT55_RS01140 PF13344 Haloacid dehalogenase-like hydrolase APT55_RS01145 PF02446 4-alpha-glucanotransferase APT55_RS01150 PF00072 Response regulator receiver domain APT55_RS01150 PF00486 Transcriptional regulatory protein, C terminal APT55_RS01155 PF05191 Adenylate kinase, active site lid APT55_RS01175 PF01471 Putative peptidoglycan binding domain APT55_RS01175 PF07486 Cell Wall Hydrolase APT55_RS01185 PF00069 Protein kinase domain APT55_RS01185 PF03793 PASTA domain APT55_RS01215 PF02965 Vitamin B12 dependent methionine synthase, activation domain APT55_RS01215 PF02310 B12 binding domain APT55_RS01215 PF02607 B12 binding domain APT55_RS01215 PF00809 Pterin binding enzyme APT55_RS01215 PF02574 Homocysteine S-methyltransferase APT55_RS01220 PF17862 AAA+ lid domain APT55_RS01220 PF06480 FtsH Extracellular APT55_RS01220 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS01220 PF01434 Peptidase family M41 APT55_RS01225 PF06480 FtsH Extracellular APT55_RS01225 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS01225 PF01434 Peptidase family M41 APT55_RS01225 PF17862 AAA+ lid domain APT55_RS01230 PF00535 Glycosyl transferase family 2 APT55_RS01230 PF13181 Tetratricopeptide repeat APT55_RS01245 PF00575 S1 RNA binding domain APT55_RS01250 PF01738 Dienelactone hydrolase family APT55_RS01255 PF00392 Bacterial regulatory proteins, gntR family APT55_RS01270 PF01131 DNA topoisomerase APT55_RS01270 PF01751 Toprim domain APT55_RS01270 PF01396 Topoisomerase DNA binding C4 zinc finger APT55_RS01275 PF00472 RF-1 domain APT55_RS01280 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS01280 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS01280 PF07724 AAA domain (Cdc48 subfamily) APT55_RS01280 PF02861 Clp amino terminal domain, pathogenicity island component APT55_RS01280 PF17871 AAA lid domain APT55_RS01285 PF02416 mttA/Hcf106 family APT55_RS01295 PF00400 WD domain, G-beta repeat APT55_RS01300 PF01145 SPFH domain / Band 7 family APT55_RS01315 PF02941 Ferredoxin thioredoxin reductase variable alpha chain APT55_RS01325 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS01325 PF01627 Hpt domain APT55_RS01325 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS01325 PF00072 Response regulator receiver domain APT55_RS01325 PF00672 HAMP domain APT55_RS01325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS01380 PF08281 Sigma-70, region 4 APT55_RS01380 PF04542 Sigma-70 region 2 APT55_RS01385 PF03795 YCII-related domain APT55_RS01395 PF03795 YCII-related domain APT55_RS01410 PF00355 Rieske [2Fe-2S] domain APT55_RS01420 PF00005 ABC transporter APT55_RS01440 PF00437 Type II/IV secretion system protein APT55_RS01445 PF13640 2OG-Fe(II) oxygenase superfamily APT55_RS01450 PF00462 Glutaredoxin APT55_RS01455 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APT55_RS01455 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APT55_RS01460 PF03707 Bacterial signalling protein N terminal repeat APT55_RS01460 PF00563 EAL domain APT55_RS01460 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS01470 PF07690 Major Facilitator Superfamily APT55_RS01475 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS01480 PF01168 Alanine racemase, N-terminal domain APT55_RS01480 PF00842 Alanine racemase, C-terminal domain APT55_RS01500 PF03562 MltA specific insert domain APT55_RS01500 PF06725 3D domain APT55_RS01505 PF00717 Peptidase S24-like APT55_RS01505 PF01726 LexA DNA binding domain APT55_RS01510 PF00202 Aminotransferase class-III APT55_RS01515 PF02069 Prokaryotic metallothionein APT55_RS01520 PF04461 Protein of unknown function (DUF520) APT55_RS01555 PF12704 MacB-like periplasmic core domain APT55_RS01555 PF02687 FtsX-like permease family APT55_RS01555 PF00005 ABC transporter APT55_RS01565 PF00486 Transcriptional regulatory protein, C terminal APT55_RS01565 PF00072 Response regulator receiver domain APT55_RS01570 PF04055 Radical SAM superfamily APT55_RS01585 PF08281 Sigma-70, region 4 APT55_RS01585 PF04542 Sigma-70 region 2 APT55_RS01595 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain APT55_RS01595 PF13538 UvrD-like helicase C-terminal domain APT55_RS01595 PF14490 Helix-hairpin-helix containing domain APT55_RS01605 PF18579 Rubisco accumulation factor 1 helix turn helix domain APT55_RS01605 PF18578 Rubisco accumulation factor 1 alpha helical domain APT55_RS01605 PF18087 Rubisco Assembly chaperone C-terminal domain APT55_RS01625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT55_RS01625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT55_RS01625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT55_RS01625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT55_RS01640 PF00072 Response regulator receiver domain APT55_RS01640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS01640 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS01640 PF09308 LuxQ, periplasmic APT55_RS01650 PF17310 Family of unknown function (DUF5357) APT55_RS01660 PF01048 Phosphorylase superfamily APT55_RS01675 PF00534 Glycosyl transferases group 1 APT55_RS01675 PF13439 Glycosyltransferase Family 4 APT55_RS01680 PF00005 ABC transporter APT55_RS01680 PF00664 ABC transporter transmembrane region APT55_RS01685 PF02397 Bacterial sugar transferase APT55_RS01690 PF13614 AAA domain APT55_RS01710 PF03796 DnaB-like helicase C terminal domain APT55_RS01710 PF00772 DnaB-like helicase N terminal domain APT55_RS01710 PF14528 LAGLIDADG-like domain APT55_RS01715 PF03948 Ribosomal protein L9, C-terminal domain APT55_RS01715 PF01281 Ribosomal protein L9, N-terminal domain APT55_RS01720 PF13193 AMP-binding enzyme C-terminal domain APT55_RS01720 PF00668 Condensation domain APT55_RS01720 PF00501 AMP-binding enzyme APT55_RS01720 PF00550 Phosphopantetheine attachment site APT55_RS01745 PF00005 ABC transporter APT55_RS01750 PF02527 rRNA small subunit methyltransferase G APT55_RS01770 PF14602 Hexapeptide repeat of succinyl-transferase APT55_RS01770 PF12464 Maltose acetyltransferase APT55_RS01775 PF06298 Photosystem II protein Y (PsbY) APT55_RS01785 PF03741 Integral membrane protein TerC family APT55_RS01790 PF00877 NlpC/P60 family APT55_RS01805 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT55_RS01805 PF01926 50S ribosome-binding GTPase APT55_RS01810 PF01165 Ribosomal protein S21 APT55_RS01820 PF01699 Sodium/calcium exchanger protein APT55_RS01830 PF03965 Penicillinase repressor APT55_RS01840 PF01761 3-dehydroquinate synthase APT55_RS01855 PF10417 C-terminal domain of 1-Cys peroxiredoxin APT55_RS01855 PF00578 AhpC/TSA family APT55_RS01865 PF01556 DnaJ C terminal domain APT55_RS01865 PF00226 DnaJ domain APT55_RS01870 PF08331 Domain of unknown function (DUF1730) APT55_RS01875 PF09150 Orange carotenoid protein, N-terminal APT55_RS01875 PF02136 Nuclear transport factor 2 (NTF2) domain APT55_RS01880 PF02082 Transcriptional regulator APT55_RS01890 PF00072 Response regulator receiver domain APT55_RS01895 PF00486 Transcriptional regulatory protein, C terminal APT55_RS01895 PF00072 Response regulator receiver domain APT55_RS01900 PF00672 HAMP domain APT55_RS01900 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS01900 PF01627 Hpt domain APT55_RS01900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS01900 PF00072 Response regulator receiver domain APT55_RS01925 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APT55_RS01935 PF00889 Elongation factor TS APT55_RS01940 PF00318 Ribosomal protein S2 APT55_RS01950 PF02163 Peptidase family M50 APT55_RS01950 PF00571 CBS domain APT55_RS01995 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system APT55_RS02015 PF00535 Glycosyl transferase family 2 APT55_RS02020 PF00684 DnaJ central domain APT55_RS02020 PF01556 DnaJ C terminal domain APT55_RS02020 PF00226 DnaJ domain APT55_RS02025 PF13393 Histidyl-tRNA synthetase APT55_RS02030 PF00709 Adenylosuccinate synthetase APT55_RS02035 PF01386 Ribosomal L25p family APT55_RS02080 PF01627 Hpt domain APT55_RS02080 PF00072 Response regulator receiver domain APT55_RS02080 PF00486 Transcriptional regulatory protein, C terminal APT55_RS02085 PF00427 Phycobilisome Linker polypeptide APT55_RS02090 PF00563 EAL domain APT55_RS02090 PF01590 GAF domain APT55_RS02090 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS02090 PF00360 Phytochrome region APT55_RS02095 PF01264 Chorismate synthase APT55_RS02120 PF00478 IMP dehydrogenase / GMP reductase domain APT55_RS02130 PF10726 Protein of function (DUF2518) APT55_RS02135 PF00465 Iron-containing alcohol dehydrogenase APT55_RS02140 PF00589 Phage integrase family APT55_RS02140 PF13495 Phage integrase, N-terminal SAM-like domain APT55_RS02150 PF00155 Aminotransferase class I and II APT55_RS02160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT55_RS02165 PF00361 Proton-conducting membrane transporter APT55_RS02190 PF00072 Response regulator receiver domain APT55_RS02190 PF00196 Bacterial regulatory proteins, luxR family APT55_RS02205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT55_RS02205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT55_RS02240 PF00501 AMP-binding enzyme APT55_RS02240 PF13193 AMP-binding enzyme C-terminal domain APT55_RS02240 PF16177 Acetyl-coenzyme A synthetase N-terminus APT55_RS02265 PF03167 Uracil DNA glycosylase superfamily APT55_RS02280 PF00535 Glycosyl transferase family 2 APT55_RS02305 PF06949 Protein of unknown function (DUF1292) APT55_RS02310 PF02618 YceG-like family APT55_RS02320 PF00005 ABC transporter APT55_RS02330 PF00072 Response regulator receiver domain APT55_RS02380 PF03023 Lipid II flippase MurJ APT55_RS02395 PF00128 Alpha amylase, catalytic domain APT55_RS02400 PF01638 HxlR-like helix-turn-helix APT55_RS02410 PF00862 Sucrose synthase APT55_RS02410 PF00534 Glycosyl transferases group 1 APT55_RS02415 PF03633 Glycosyl hydrolase family 65, C-terminal domain APT55_RS02415 PF03636 Glycosyl hydrolase family 65, N-terminal domain APT55_RS02415 PF03632 Glycosyl hydrolase family 65 central catalytic domain APT55_RS02420 PF00487 Fatty acid desaturase APT55_RS02425 PF02548 Ketopantoate hydroxymethyltransferase APT55_RS02455 PF00919 Uncharacterized protein family UPF0004 APT55_RS02455 PF01938 TRAM domain APT55_RS02455 PF04055 Radical SAM superfamily APT55_RS02470 PF02401 LytB protein APT55_RS02495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT55_RS02510 PF01467 Cytidylyltransferase-like APT55_RS02515 PF00248 Aldo/keto reductase family APT55_RS02520 PF00571 CBS domain APT55_RS02520 PF01743 Poly A polymerase head domain APT55_RS02525 PF01737 YCF9 APT55_RS02530 PF00885 6,7-dimethyl-8-ribityllumazine synthase APT55_RS02535 PF00005 ABC transporter APT55_RS02535 PF03459 TOBE domain APT55_RS02555 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APT55_RS02555 PF00400 WD domain, G-beta repeat APT55_RS02560 PF00395 S-layer homology domain APT55_RS02560 PF00963 Cohesin domain APT55_RS02565 PF01380 SIS domain APT55_RS02570 PF07690 Major Facilitator Superfamily APT55_RS02575 PF02469 Fasciclin domain APT55_RS02580 PF07722 Peptidase C26 APT55_RS02600 PF01578 Cytochrome C assembly protein APT55_RS02615 PF04255 Protein of unknown function (DUF433) APT55_RS02620 PF01171 PP-loop family APT55_RS02620 PF09179 TilS substrate binding domain APT55_RS02630 PF00072 Response regulator receiver domain APT55_RS02630 PF14332 Domain of unknown function (DUF4388) APT55_RS02635 PF00486 Transcriptional regulatory protein, C terminal APT55_RS02635 PF00072 Response regulator receiver domain APT55_RS02650 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APT55_RS02650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS02655 PF00072 Response regulator receiver domain APT55_RS02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS02655 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS02655 PF01627 Hpt domain APT55_RS02655 PF01584 CheW-like domain APT55_RS02655 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS02655 PF01627 Hpt domain APT55_RS02655 PF00072 Response regulator receiver domain APT55_RS02655 PF01584 CheW-like domain APT55_RS02655 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS02655 PF00072 Response regulator receiver domain APT55_RS02655 PF01627 Hpt domain APT55_RS02655 PF01584 CheW-like domain APT55_RS02660 PF13439 Glycosyltransferase Family 4 APT55_RS02665 PF13439 Glycosyltransferase Family 4 APT55_RS02665 PF00534 Glycosyl transferases group 1 APT55_RS02670 PF09084 NMT1/THI5 like APT55_RS02675 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT55_RS02680 PF00502 Phycobilisome protein APT55_RS02685 PF00502 Phycobilisome protein APT55_RS02690 PF07690 Major Facilitator Superfamily APT55_RS02695 PF00395 S-layer homology domain APT55_RS02695 PF04966 Carbohydrate-selective porin, OprB family APT55_RS02720 PF01596 O-methyltransferase APT55_RS02750 PF00664 ABC transporter transmembrane region APT55_RS02750 PF00005 ABC transporter APT55_RS02765 PF05685 Putative restriction endonuclease APT55_RS02775 PF04143 Sulphur transport APT55_RS02780 PF09084 NMT1/THI5 like APT55_RS02790 PF00881 Nitroreductase family APT55_RS02795 PF01047 MarR family APT55_RS02805 PF00296 Luciferase-like monooxygenase APT55_RS02815 PF13417 Glutathione S-transferase, N-terminal domain APT55_RS02825 PF09084 NMT1/THI5 like APT55_RS02835 PF10609 NUBPL iron-transfer P-loop NTPase APT55_RS02850 PF00069 Protein kinase domain APT55_RS02865 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS02870 PF00005 ABC transporter APT55_RS02880 PF03358 NADPH-dependent FMN reductase APT55_RS02935 PF01569 PAP2 superfamily APT55_RS02950 PF01925 Sulfite exporter TauE/SafE APT55_RS02965 PF03459 TOBE domain APT55_RS02965 PF00005 ABC transporter APT55_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS03005 PF01618 MotA/TolQ/ExbB proton channel family APT55_RS03010 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS03020 PF02308 MgtC family APT55_RS03025 PF04966 Carbohydrate-selective porin, OprB family APT55_RS03025 PF00395 S-layer homology domain APT55_RS03030 PF00296 Luciferase-like monooxygenase APT55_RS03045 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS03055 PF03466 LysR substrate binding domain APT55_RS03080 PF00561 alpha/beta hydrolase fold APT55_RS03085 PF01053 Cys/Met metabolism PLP-dependent enzyme APT55_RS03090 PF00581 Rhodanese-like domain APT55_RS03115 PF00510 Cytochrome c oxidase subunit III APT55_RS03120 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT55_RS03135 PF12805 FUSC-like inner membrane protein yccS APT55_RS03140 PF00384 Molybdopterin oxidoreductase APT55_RS03145 PF13180 PDZ domain APT55_RS03155 PF07690 Major Facilitator Superfamily APT55_RS03160 PF00654 Voltage gated chloride channel APT55_RS03225 PF00300 Histidine phosphatase superfamily (branch 1) APT55_RS03235 PF10502 Signal peptidase, peptidase S26 APT55_RS03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03270 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03270 PF18415 Histidine kinase receptor ArcB trans-membrane domain APT55_RS03270 PF01627 Hpt domain APT55_RS03270 PF00989 PAS fold APT55_RS03270 PF00072 Response regulator receiver domain APT55_RS03275 PF00072 Response regulator receiver domain APT55_RS03285 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APT55_RS03290 PF17265 Family of unknown function (DUF5331) APT55_RS03295 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS03300 PF03976 Polyphosphate kinase 2 (PPK2) APT55_RS03315 PF08544 GHMP kinases C terminal APT55_RS03315 PF00288 GHMP kinases N terminal domain APT55_RS03320 PF08245 Mur ligase middle domain APT55_RS03320 PF02875 Mur ligase family, glutamate ligase domain APT55_RS03325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT55_RS03325 PF02817 e3 binding domain APT55_RS03325 PF00364 Biotin-requiring enzyme APT55_RS03335 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT55_RS03335 PF13378 Enolase C-terminal domain-like APT55_RS03350 PF00266 Aminotransferase class-V APT55_RS03360 PF00149 Calcineurin-like phosphoesterase APT55_RS03360 PF02872 5'-nucleotidase, C-terminal domain APT55_RS03365 PF01464 Transglycosylase SLT domain APT55_RS03365 PF10145 Phage-related minor tail protein APT55_RS03365 PF01551 Peptidase family M23 APT55_RS03370 PF02578 Multi-copper polyphenol oxidoreductase laccase APT55_RS03380 PF01039 Carboxyl transferase domain APT55_RS03380 PF17848 Acetyl-coA carboxylase zinc finger domain APT55_RS03385 PF14495 Cytochrome c-550 domain APT55_RS03390 PF14495 Cytochrome c-550 domain APT55_RS03395 PF00127 Copper binding proteins, plastocyanin/azurin family APT55_RS03400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT55_RS03410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS03410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT55_RS03435 PF00535 Glycosyl transferase family 2 APT55_RS03440 PF00764 Arginosuccinate synthase APT55_RS03465 PF00501 AMP-binding enzyme APT55_RS03470 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT55_RS03470 PF00378 Enoyl-CoA hydratase/isomerase APT55_RS03470 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT55_RS03475 PF02803 Thiolase, C-terminal domain APT55_RS03475 PF00108 Thiolase, N-terminal domain APT55_RS03480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT55_RS03480 PF02770 Acyl-CoA dehydrogenase, middle domain APT55_RS03480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT55_RS03480 PF09317 Domain of unknown function (DUF1974) APT55_RS03490 PF00266 Aminotransferase class-V APT55_RS03495 PF00155 Aminotransferase class I and II APT55_RS03500 PF13193 AMP-binding enzyme C-terminal domain APT55_RS03500 PF16177 Acetyl-coenzyme A synthetase N-terminus APT55_RS03500 PF00501 AMP-binding enzyme APT55_RS03510 PF04209 homogentisate 1,2-dioxygenase APT55_RS03515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS03550 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT55_RS03550 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT55_RS03555 PF12849 PBP superfamily domain APT55_RS03560 PF01022 Bacterial regulatory protein, arsR family APT55_RS03570 PF01112 Asparaginase APT55_RS03575 PF12697 Alpha/beta hydrolase family APT55_RS03580 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03580 PF09308 LuxQ, periplasmic APT55_RS03580 PF00072 Response regulator receiver domain APT55_RS03580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03585 PF08448 PAS fold APT55_RS03585 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03585 PF00072 Response regulator receiver domain APT55_RS03585 PF13188 PAS domain APT55_RS03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03595 PF00571 CBS domain APT55_RS03620 PF00011 Hsp20/alpha crystallin family APT55_RS03625 PF00690 Cation transporter/ATPase, N-terminus APT55_RS03625 PF00689 Cation transporting ATPase, C-terminus APT55_RS03635 PF01594 AI-2E family transporter APT55_RS03640 PF00282 Pyridoxal-dependent decarboxylase conserved domain APT55_RS03650 PF00550 Phosphopantetheine attachment site APT55_RS03655 PF00364 Biotin-requiring enzyme APT55_RS03655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT55_RS03655 PF02817 e3 binding domain APT55_RS03665 PF13193 AMP-binding enzyme C-terminal domain APT55_RS03665 PF00501 AMP-binding enzyme APT55_RS03670 PF02627 Carboxymuconolactone decarboxylase family APT55_RS03680 PF02769 AIR synthase related protein, C-terminal domain APT55_RS03680 PF00586 AIR synthase related protein, N-terminal domain APT55_RS03690 PF01924 Hydrogenase formation hypA family APT55_RS03695 PF01455 HupF/HypC family APT55_RS03700 PF01300 Telomere recombination APT55_RS03700 PF07503 HypF finger APT55_RS03700 PF00708 Acylphosphatase APT55_RS03700 PF17788 HypF Kae1-like domain APT55_RS03705 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA APT55_RS03725 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS03725 PF00970 Oxidoreductase FAD-binding domain APT55_RS03725 PF00175 Oxidoreductase NAD-binding domain APT55_RS03760 PF00999 Sodium/hydrogen exchanger family APT55_RS03765 PF00013 KH domain APT55_RS03765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APT55_RS03765 PF01138 3' exoribonuclease family, domain 1 APT55_RS03765 PF00575 S1 RNA binding domain APT55_RS03765 PF03725 3' exoribonuclease family, domain 2 APT55_RS03770 PF00176 SNF2 family N-terminal domain APT55_RS03770 PF12419 SNF2 Helicase protein APT55_RS03770 PF00271 Helicase conserved C-terminal domain APT55_RS03775 PF04434 SWIM zinc finger APT55_RS03785 PF00121 Triosephosphate isomerase APT55_RS03800 PF00171 Aldehyde dehydrogenase family APT55_RS03810 PF00106 short chain dehydrogenase APT55_RS03820 PF01121 Dephospho-CoA kinase APT55_RS03835 PF01979 Amidohydrolase family APT55_RS03840 PF00892 EamA-like transporter family APT55_RS03845 PF09308 LuxQ, periplasmic APT55_RS03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03845 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03845 PF00072 Response regulator receiver domain APT55_RS03855 PF00753 Metallo-beta-lactamase superfamily APT55_RS03855 PF16123 Hydroxyacylglutathione hydrolase C-terminus APT55_RS03865 PF13439 Glycosyltransferase Family 4 APT55_RS03865 PF00534 Glycosyl transferases group 1 APT55_RS03875 PF00534 Glycosyl transferases group 1 APT55_RS03875 PF13439 Glycosyltransferase Family 4 APT55_RS03880 PF00664 ABC transporter transmembrane region APT55_RS03880 PF00005 ABC transporter APT55_RS03905 PF01370 NAD dependent epimerase/dehydratase family APT55_RS03920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT55_RS03920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS03935 PF03412 Peptidase C39 family APT55_RS03935 PF00664 ABC transporter transmembrane region APT55_RS03935 PF00005 ABC transporter APT55_RS03940 PF01241 Photosystem I psaG / psaK APT55_RS03945 PF00072 Response regulator receiver domain APT55_RS03945 PF14332 Domain of unknown function (DUF4388) APT55_RS03950 PF00072 Response regulator receiver domain APT55_RS03960 PF00360 Phytochrome region APT55_RS03960 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS03960 PF01590 GAF domain APT55_RS03960 PF00563 EAL domain APT55_RS03965 PF01584 CheW-like domain APT55_RS03965 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03965 PF01627 Hpt domain APT55_RS03965 PF00072 Response regulator receiver domain APT55_RS03970 PF00171 Aldehyde dehydrogenase family APT55_RS03975 PF00106 short chain dehydrogenase APT55_RS03990 PF00005 ABC transporter APT55_RS04020 PF01202 Shikimate kinase APT55_RS04025 PF01042 Endoribonuclease L-PSP APT55_RS04030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT55_RS04035 PF00999 Sodium/hydrogen exchanger family APT55_RS04055 PF01593 Flavin containing amine oxidoreductase APT55_RS04065 PF00905 Penicillin binding protein transpeptidase domain APT55_RS04065 PF00912 Transglycosylase APT55_RS04065 PF17092 Penicillin-binding protein OB-like domain APT55_RS04070 PF00579 tRNA synthetases class I (W and Y) APT55_RS04070 PF01479 S4 domain APT55_RS04075 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APT55_RS04220 PF00737 Photosystem II 10 kDa phosphoprotein APT55_RS04225 PF02416 mttA/Hcf106 family APT55_RS04230 PF01195 Peptidyl-tRNA hydrolase APT55_RS04245 PF11283 Protein of unknown function (DUF3084) APT55_RS04250 PF00027 Cyclic nucleotide-binding domain APT55_RS04250 PF13545 Crp-like helix-turn-helix domain APT55_RS04265 PF04539 Sigma-70 region 3 APT55_RS04265 PF04542 Sigma-70 region 2 APT55_RS04265 PF00140 Sigma-70 factor, region 1.2 APT55_RS04265 PF04545 Sigma-70, region 4 APT55_RS04280 PF00581 Rhodanese-like domain APT55_RS04290 PF00196 Bacterial regulatory proteins, luxR family APT55_RS04290 PF00072 Response regulator receiver domain APT55_RS04310 PF07690 Major Facilitator Superfamily APT55_RS04315 PF00756 Putative esterase APT55_RS04315 PF01476 LysM domain APT55_RS04335 PF07286 Protein of unknown function (DUF1445) APT55_RS04345 PF05378 Hydantoinase/oxoprolinase N-terminal region APT55_RS04345 PF01968 Hydantoinase/oxoprolinase APT55_RS04350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS04350 PF03466 LysR substrate binding domain APT55_RS04360 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APT55_RS04360 PF00400 WD domain, G-beta repeat APT55_RS04365 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APT55_RS04390 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS04400 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS04415 PF09335 SNARE associated Golgi protein APT55_RS04425 PF00293 NUDIX domain APT55_RS04430 PF00270 DEAD/DEAH box helicase APT55_RS04430 PF17191 RecG wedge domain APT55_RS04430 PF00271 Helicase conserved C-terminal domain APT55_RS04440 PF13476 AAA domain APT55_RS04445 PF01156 Inosine-uridine preferring nucleoside hydrolase APT55_RS04455 PF07702 UTRA domain APT55_RS04455 PF00392 Bacterial regulatory proteins, gntR family APT55_RS04465 PF00561 alpha/beta hydrolase fold APT55_RS04470 PF00120 Glutamine synthetase, catalytic domain APT55_RS04475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT55_RS04480 PF12833 Helix-turn-helix domain APT55_RS04485 PF01894 Uncharacterised protein family UPF0047 APT55_RS04500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04500 PF08447 PAS fold APT55_RS04500 PF08448 PAS fold APT55_RS04505 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT55_RS04510 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS04515 PF00005 ABC transporter APT55_RS04525 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT55_RS04525 PF03807 NADP oxidoreductase coenzyme F420-dependent APT55_RS04530 PF04472 Cell division protein SepF APT55_RS04540 PF01168 Alanine racemase, N-terminal domain APT55_RS04550 PF00186 Dihydrofolate reductase APT55_RS04555 PF04545 Sigma-70, region 4 APT55_RS04555 PF04542 Sigma-70 region 2 APT55_RS04555 PF04539 Sigma-70 region 3 APT55_RS04555 PF00140 Sigma-70 factor, region 1.2 APT55_RS04565 PF06508 Queuosine biosynthesis protein QueC APT55_RS04575 PF07690 Major Facilitator Superfamily APT55_RS04595 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS04595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04595 PF00989 PAS fold APT55_RS04600 PF01494 FAD binding domain APT55_RS04605 PF01709 Transcriptional regulator APT55_RS04610 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS04615 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS04620 PF01547 Bacterial extracellular solute-binding protein APT55_RS04645 PF13676 TIR domain APT55_RS04660 PF00535 Glycosyl transferase family 2 APT55_RS04665 PF00534 Glycosyl transferases group 1 APT55_RS04665 PF13477 Glycosyl transferase 4-like APT55_RS04680 PF13439 Glycosyltransferase Family 4 APT55_RS04680 PF00534 Glycosyl transferases group 1 APT55_RS04690 PF01738 Dienelactone hydrolase family APT55_RS04690 PF00156 Phosphoribosyl transferase domain APT55_RS04695 PF03167 Uracil DNA glycosylase superfamily APT55_RS04705 PF04002 RadC-like JAB domain APT55_RS04710 PF09308 LuxQ, periplasmic APT55_RS04710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04710 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS04710 PF00072 Response regulator receiver domain APT55_RS04715 PF01209 ubiE/COQ5 methyltransferase family APT55_RS04720 PF03358 NADPH-dependent FMN reductase APT55_RS04740 PF01047 MarR family APT55_RS04745 PF10417 C-terminal domain of 1-Cys peroxiredoxin APT55_RS04745 PF00578 AhpC/TSA family APT55_RS04755 PF00664 ABC transporter transmembrane region APT55_RS04755 PF00005 ABC transporter APT55_RS04755 PF03412 Peptidase C39 family APT55_RS04760 PF00753 Metallo-beta-lactamase superfamily APT55_RS04765 PF13409 Glutathione S-transferase, N-terminal domain APT55_RS04775 PF08239 Bacterial SH3 domain APT55_RS04775 PF01520 N-acetylmuramoyl-L-alanine amidase APT55_RS04780 PF00364 Biotin-requiring enzyme APT55_RS04780 PF00561 alpha/beta hydrolase fold APT55_RS04820 PF03633 Glycosyl hydrolase family 65, C-terminal domain APT55_RS04820 PF03632 Glycosyl hydrolase family 65 central catalytic domain APT55_RS04820 PF03636 Glycosyl hydrolase family 65, N-terminal domain APT55_RS04830 PF00589 Phage integrase family APT55_RS04830 PF13495 Phage integrase, N-terminal SAM-like domain APT55_RS04835 PF01842 ACT domain APT55_RS04835 PF00742 Homoserine dehydrogenase APT55_RS04835 PF03447 Homoserine dehydrogenase, NAD binding domain APT55_RS04850 PF01066 CDP-alcohol phosphatidyltransferase APT55_RS04855 PF02397 Bacterial sugar transferase APT55_RS04865 PF13545 Crp-like helix-turn-helix domain APT55_RS04865 PF00027 Cyclic nucleotide-binding domain APT55_RS04870 PF13183 4Fe-4S dicluster domain APT55_RS04870 PF02754 Cysteine-rich domain APT55_RS04875 PF01565 FAD binding domain APT55_RS04875 PF02913 FAD linked oxidases, C-terminal domain APT55_RS04880 PF01740 STAS domain APT55_RS04880 PF13426 PAS domain APT55_RS04885 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS04885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04885 PF00672 HAMP domain APT55_RS04890 PF00486 Transcriptional regulatory protein, C terminal APT55_RS04890 PF00072 Response regulator receiver domain APT55_RS04895 PF00834 Ribulose-phosphate 3 epimerase family APT55_RS04910 PF00400 WD domain, G-beta repeat APT55_RS04910 PF00931 NB-ARC domain APT55_RS04920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT55_RS04940 PF13807 G-rich domain on putative tyrosine kinase APT55_RS04940 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS04940 PF02706 Chain length determinant protein APT55_RS04945 PF13282 Domain of unknown function (DUF4070) APT55_RS04945 PF02310 B12 binding domain APT55_RS04945 PF04055 Radical SAM superfamily APT55_RS04965 PF02463 RecF/RecN/SMC N terminal domain APT55_RS04970 PF03109 ABC1 family APT55_RS04975 PF12848 ABC transporter APT55_RS04975 PF16326 ABC transporter C-terminal domain APT55_RS04975 PF00005 ABC transporter APT55_RS04985 PF00578 AhpC/TSA family APT55_RS04995 PF03061 Thioesterase superfamily APT55_RS05000 PF00557 Metallopeptidase family M24 APT55_RS05010 PF01594 AI-2E family transporter APT55_RS05015 PF00563 EAL domain APT55_RS05015 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS05015 PF03707 Bacterial signalling protein N terminal repeat APT55_RS05025 PF00400 WD domain, G-beta repeat APT55_RS05030 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT55_RS05035 PF07568 Histidine kinase APT55_RS05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS05035 PF12282 Signal transduction histidine kinase APT55_RS05040 PF00486 Transcriptional regulatory protein, C terminal APT55_RS05040 PF00072 Response regulator receiver domain APT55_RS05045 PF04715 Anthranilate synthase component I, N terminal region APT55_RS05045 PF00425 chorismate binding enzyme APT55_RS05050 PF00072 Response regulator receiver domain APT55_RS05050 PF13426 PAS domain APT55_RS05050 PF08448 PAS fold APT55_RS05050 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS05050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS05055 PF00072 Response regulator receiver domain APT55_RS05055 PF00158 Sigma-54 interaction domain APT55_RS05055 PF02954 Bacterial regulatory protein, Fis family APT55_RS05060 PF03705 CheR methyltransferase, all-alpha domain APT55_RS05060 PF01739 CheR methyltransferase, SAM binding domain APT55_RS05060 PF01339 CheB methylesterase APT55_RS05060 PF08448 PAS fold APT55_RS05070 PF02446 4-alpha-glucanotransferase APT55_RS05075 PF16657 Maltogenic Amylase, C-terminal domain APT55_RS05075 PF00128 Alpha amylase, catalytic domain APT55_RS05090 PF02361 Cobalt transport protein APT55_RS05095 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT55_RS05095 PF01926 50S ribosome-binding GTPase APT55_RS05100 PF03435 Saccharopine dehydrogenase NADP binding domain APT55_RS05125 PF01255 Putative undecaprenyl diphosphate synthase APT55_RS05140 PF01380 SIS domain APT55_RS05145 PF04055 Radical SAM superfamily APT55_RS05150 PF01242 6-pyruvoyl tetrahydropterin synthase APT55_RS05160 PF02903 Alpha amylase, N-terminal ig-like domain APT55_RS05160 PF00128 Alpha amylase, catalytic domain APT55_RS05160 PF16657 Maltogenic Amylase, C-terminal domain APT55_RS05170 PF00583 Acetyltransferase (GNAT) family APT55_RS05180 PF07517 SecA DEAD-like domain APT55_RS05180 PF07516 SecA Wing and Scaffold domain APT55_RS05180 PF01043 SecA preprotein cross-linking domain APT55_RS05185 PF01134 Glucose inhibited division protein A APT55_RS05195 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT55_RS05195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS05205 PF11910 Cyanobacterial and plant NDH-1 subunit O APT55_RS05210 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APT55_RS05210 PF00056 lactate/malate dehydrogenase, NAD binding domain APT55_RS05225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT55_RS05230 PF01435 Peptidase family M48 APT55_RS05235 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS05250 PF00106 short chain dehydrogenase APT55_RS05260 PF00141 Peroxidase APT55_RS05275 PF01218 Coproporphyrinogen III oxidase APT55_RS05285 PF00124 Photosynthetic reaction centre protein APT55_RS05300 PF00248 Aldo/keto reductase family APT55_RS05310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT55_RS05320 PF01938 TRAM domain APT55_RS05320 PF13847 Methyltransferase domain APT55_RS05325 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APT55_RS05325 PF14602 Hexapeptide repeat of succinyl-transferase APT55_RS05325 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS05340 PF01891 Cobalt uptake substrate-specific transmembrane region APT55_RS05345 PF02553 Cobalt transport protein component CbiN APT55_RS05350 PF02361 Cobalt transport protein APT55_RS05355 PF00005 ABC transporter APT55_RS05395 PF01300 Telomere recombination APT55_RS05400 PF01969 Protein of unknown function DUF111 APT55_RS05410 PF01627 Hpt domain APT55_RS05410 PF00072 Response regulator receiver domain APT55_RS05410 PF00486 Transcriptional regulatory protein, C terminal APT55_RS05415 PF00672 HAMP domain APT55_RS05415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS05415 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS05415 PF13426 PAS domain APT55_RS05420 PF00486 Transcriptional regulatory protein, C terminal APT55_RS05420 PF00072 Response regulator receiver domain APT55_RS05430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS05430 PF01590 GAF domain APT55_RS05430 PF00360 Phytochrome region APT55_RS05430 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS05430 PF08446 PAS fold APT55_RS05440 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase APT55_RS05465 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS05465 PF00069 Protein kinase domain APT55_RS05485 PF06827 Zinc finger found in FPG and IleRS APT55_RS05485 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT55_RS05485 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT55_RS05490 PF02811 PHP domain APT55_RS05500 PF07995 Glucose / Sorbosone dehydrogenase APT55_RS05535 PF00258 Flavodoxin APT55_RS05565 PF00175 Oxidoreductase NAD-binding domain APT55_RS05565 PF00042 Globin APT55_RS05565 PF00970 Oxidoreductase FAD-binding domain APT55_RS05575 PF01209 ubiE/COQ5 methyltransferase family APT55_RS05590 PF00459 Inositol monophosphatase family APT55_RS05600 PF00294 pfkB family carbohydrate kinase APT55_RS05605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS05615 PF00892 EamA-like transporter family APT55_RS05625 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system APT55_RS05645 PF00501 AMP-binding enzyme APT55_RS05645 PF13193 AMP-binding enzyme C-terminal domain APT55_RS05685 PF02938 GAD domain APT55_RS05685 PF00152 tRNA synthetases class II (D, K and N) APT55_RS05685 PF01336 OB-fold nucleic acid binding domain APT55_RS05715 PF00101 Ribulose bisphosphate carboxylase, small chain APT55_RS05715 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS05720 PF03319 Ethanolamine utilisation protein EutN/carboxysome APT55_RS05725 PF00936 BMC domain APT55_RS05730 PF00936 BMC domain APT55_RS05735 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus APT55_RS05735 PF00361 Proton-conducting membrane transporter APT55_RS05735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT55_RS05740 PF00361 Proton-conducting membrane transporter APT55_RS05755 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus APT55_RS05755 PF00361 Proton-conducting membrane transporter APT55_RS05755 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT55_RS05760 PF00361 Proton-conducting membrane transporter APT55_RS05770 PF02469 Fasciclin domain APT55_RS05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS05775 PF03466 LysR substrate binding domain APT55_RS05780 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term APT55_RS05780 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus APT55_RS05825 PF13676 TIR domain APT55_RS05840 PF01259 SAICAR synthetase APT55_RS05845 PF01103 Surface antigen APT55_RS05845 PF07244 Surface antigen variable number repeat APT55_RS05850 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APT55_RS05855 PF07977 FabA-like domain APT55_RS05860 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS05860 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APT55_RS05865 PF02684 Lipid-A-disaccharide synthetase APT55_RS05870 PF01040 UbiA prenyltransferase family APT55_RS05880 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APT55_RS05880 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT55_RS05885 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT55_RS05890 PF00510 Cytochrome c oxidase subunit III APT55_RS05900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT55_RS05905 PF00873 AcrB/AcrD/AcrF family APT55_RS05910 PF00486 Transcriptional regulatory protein, C terminal APT55_RS05910 PF00072 Response regulator receiver domain APT55_RS06145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS06145 PF08448 PAS fold APT55_RS06145 PF08447 PAS fold APT55_RS06235 PF10145 Phage-related minor tail protein APT55_RS06235 PF01464 Transglycosylase SLT domain APT55_RS06235 PF01551 Peptidase family M23 APT55_RS06375 PF04542 Sigma-70 region 2 APT55_RS06375 PF04545 Sigma-70, region 4 APT55_RS06375 PF00140 Sigma-70 factor, region 1.2 APT55_RS06375 PF03979 Sigma-70 factor, region 1.1 APT55_RS06375 PF04539 Sigma-70 region 3 APT55_RS06495 PF00575 S1 RNA binding domain APT55_RS06500 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS06505 PF00072 Response regulator receiver domain APT55_RS06505 PF00486 Transcriptional regulatory protein, C terminal APT55_RS06510 PF01551 Peptidase family M23 APT55_RS06510 PF04225 Opacity-associated protein A LysM-like domain APT55_RS06515 PF00762 Ferrochelatase APT55_RS06535 PF08448 PAS fold APT55_RS06535 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS06535 PF13426 PAS domain APT55_RS06535 PF00072 Response regulator receiver domain APT55_RS06540 PF03477 ATP cone domain APT55_RS06555 PF09150 Orange carotenoid protein, N-terminal APT55_RS06575 PF07963 Prokaryotic N-terminal methylation motif APT55_RS06575 PF14245 Type IV pilin PilA APT55_RS06590 PF04483 Protein of unknown function (DUF565) APT55_RS06600 PF01556 DnaJ C terminal domain APT55_RS06600 PF00226 DnaJ domain APT55_RS06605 PF00012 Hsp70 protein APT55_RS06610 PF03734 L,D-transpeptidase catalytic domain APT55_RS06610 PF01476 LysM domain APT55_RS06625 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS06625 PF00672 HAMP domain APT55_RS06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS06635 PF00487 Fatty acid desaturase APT55_RS06660 PF00582 Universal stress protein family APT55_RS06665 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS06680 PF00140 Sigma-70 factor, region 1.2 APT55_RS06680 PF04542 Sigma-70 region 2 APT55_RS06680 PF04539 Sigma-70 region 3 APT55_RS06680 PF04545 Sigma-70, region 4 APT55_RS06685 PF01522 Polysaccharide deacetylase APT55_RS06690 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT55_RS06690 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT55_RS06705 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS06715 PF10017 Histidine-specific methyltransferase, SAM-dependent APT55_RS06720 PF12867 DinB superfamily APT55_RS06720 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS06725 PF13230 Glutamine amidotransferases class-II APT55_RS06730 PF04241 Protein of unknown function (DUF423) APT55_RS06735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APT55_RS06740 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT55_RS06745 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APT55_RS06750 PF00301 Rubredoxin APT55_RS06755 PF14870 Photosynthesis system II assembly factor YCF48 APT55_RS06760 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits APT55_RS06760 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit APT55_RS06765 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits APT55_RS06770 PF02419 PsbL protein APT55_RS06775 PF01788 PsbJ APT55_RS06780 PF00796 Photosystem I reaction centre subunit VIII APT55_RS06790 PF02605 Photosystem I reaction centre subunit XI APT55_RS06810 PF07726 ATPase family associated with various cellular activities (AAA) APT55_RS06810 PF17863 AAA lid domain APT55_RS06815 PF10990 Protein of unknown function (DUF2809) APT55_RS06820 PF05140 ResB-like family APT55_RS06825 PF11412 Disulphide bond corrector protein DsbC APT55_RS06825 PF02683 Cytochrome C biogenesis protein transmembrane region APT55_RS06830 PF01098 Cell cycle protein APT55_RS06850 PF00149 Calcineurin-like phosphoesterase APT55_RS06855 PF00226 DnaJ domain APT55_RS06855 PF01556 DnaJ C terminal domain APT55_RS06855 PF00684 DnaJ central domain APT55_RS06885 PF00654 Voltage gated chloride channel APT55_RS06890 PF01475 Ferric uptake regulator family APT55_RS06895 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APT55_RS06905 PF00124 Photosynthetic reaction centre protein APT55_RS06910 PF07690 Major Facilitator Superfamily APT55_RS06920 PF00072 Response regulator receiver domain APT55_RS06925 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS06925 PF00072 Response regulator receiver domain APT55_RS06925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS06925 PF01627 Hpt domain APT55_RS06930 PF00501 AMP-binding enzyme APT55_RS06930 PF13193 AMP-binding enzyme C-terminal domain APT55_RS06930 PF00668 Condensation domain APT55_RS06930 PF08241 Methyltransferase domain APT55_RS06930 PF00391 PEP-utilising enzyme, mobile domain APT55_RS06930 PF00550 Phosphopantetheine attachment site APT55_RS06930 PF00975 Thioesterase domain APT55_RS06945 PF04607 Region found in RelA / SpoT proteins APT55_RS06945 PF02824 TGS domain APT55_RS06945 PF13291 ACT domain APT55_RS06950 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APT55_RS06950 PF08501 Shikimate dehydrogenase substrate binding domain APT55_RS06955 PF03776 Septum formation topological specificity factor MinE APT55_RS06960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS06965 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT55_RS06965 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT55_RS06965 PF06827 Zinc finger found in FPG and IleRS APT55_RS06970 PF02427 Photosystem I reaction centre subunit IV / PsaE APT55_RS07010 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS07025 PF02979 Nitrile hydratase, alpha chain APT55_RS07040 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07040 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS07045 PF03466 LysR substrate binding domain APT55_RS07050 PF01209 ubiE/COQ5 methyltransferase family APT55_RS07065 PF02560 Cyanate lyase C-terminal domain APT55_RS07070 PF00005 ABC transporter APT55_RS07075 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS07100 PF02503 Polyphosphate kinase middle domain APT55_RS07100 PF17941 Polyphosphate kinase C-terminal domain 1 APT55_RS07100 PF13089 Polyphosphate kinase N-terminal domain APT55_RS07100 PF13090 Polyphosphate kinase C-terminal domain 2 APT55_RS07110 PF00689 Cation transporting ATPase, C-terminus APT55_RS07110 PF00690 Cation transporter/ATPase, N-terminus APT55_RS07115 PF00664 ABC transporter transmembrane region APT55_RS07115 PF00005 ABC transporter APT55_RS07120 PF00005 ABC transporter APT55_RS07120 PF00664 ABC transporter transmembrane region APT55_RS07125 PF00672 HAMP domain APT55_RS07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07125 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07125 PF01627 Hpt domain APT55_RS07125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS07125 PF00072 Response regulator receiver domain APT55_RS07145 PF05685 Putative restriction endonuclease APT55_RS07155 PF00664 ABC transporter transmembrane region APT55_RS07155 PF00005 ABC transporter APT55_RS07160 PF13579 Glycosyl transferase 4-like domain APT55_RS07160 PF00534 Glycosyl transferases group 1 APT55_RS07165 PF00534 Glycosyl transferases group 1 APT55_RS07165 PF13439 Glycosyltransferase Family 4 APT55_RS07170 PF03033 Glycosyltransferase family 28 N-terminal domain APT55_RS07170 PF04101 Glycosyltransferase family 28 C-terminal domain APT55_RS07175 PF18719 ArlS sensor domain APT55_RS07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07175 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07180 PF00486 Transcriptional regulatory protein, C terminal APT55_RS07180 PF00072 Response regulator receiver domain APT55_RS07185 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APT55_RS07190 PF01227 GTP cyclohydrolase I APT55_RS07200 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APT55_RS07205 PF01209 ubiE/COQ5 methyltransferase family APT55_RS07220 PF00535 Glycosyl transferase family 2 APT55_RS07220 PF01501 Glycosyl transferase family 8 APT55_RS07225 PF01488 Shikimate / quinate 5-dehydrogenase APT55_RS07230 PF11266 Long-chain fatty aldehyde decarbonylase APT55_RS07235 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS07240 PF01297 Zinc-uptake complex component A periplasmic APT55_RS07245 PF00005 ABC transporter APT55_RS07250 PF00950 ABC 3 transport family APT55_RS07260 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07260 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07270 PF00490 Delta-aminolevulinic acid dehydratase APT55_RS07300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT55_RS07300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT55_RS07300 PF03129 Anticodon binding domain APT55_RS07310 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07310 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07315 PF01227 GTP cyclohydrolase I APT55_RS07320 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07320 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07325 PF01502 Phosphoribosyl-AMP cyclohydrolase APT55_RS07330 PF00101 Ribulose bisphosphate carboxylase, small chain APT55_RS07330 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS07335 PF09190 DALR domain APT55_RS07335 PF01406 tRNA synthetases class I (C) catalytic domain APT55_RS07340 PF01209 ubiE/COQ5 methyltransferase family APT55_RS07350 PF00699 Urease beta subunit APT55_RS07355 PF00547 Urease, gamma subunit APT55_RS07360 PF01774 UreD urease accessory protein APT55_RS07370 PF00535 Glycosyl transferase family 2 APT55_RS07380 PF02627 Carboxymuconolactone decarboxylase family APT55_RS07385 PF01078 Magnesium chelatase, subunit ChlI APT55_RS07385 PF13335 Magnesium chelatase, subunit ChlI C-terminal APT55_RS07425 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APT55_RS07435 PF06745 KaiC APT55_RS07440 PF07689 KaiB domain APT55_RS07445 PF07688 KaiA C-terminal domain APT55_RS07450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07450 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07455 PF02633 Creatinine amidohydrolase APT55_RS07460 PF03437 BtpA family APT55_RS07475 PF13085 2Fe-2S iron-sulfur cluster binding domain APT55_RS07485 PF07444 Ycf66 protein N-terminus APT55_RS07490 PF06596 Photosystem II reaction centre X protein (PsbX) APT55_RS07510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT55_RS07510 PF02785 Biotin carboxylase C-terminal domain APT55_RS07510 PF00289 Biotin carboxylase, N-terminal domain APT55_RS07525 PF00580 UvrD/REP helicase N-terminal domain APT55_RS07525 PF13361 UvrD-like helicase C-terminal domain APT55_RS07575 PF00677 Lumazine binding domain APT55_RS07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07580 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07580 PF00989 PAS fold APT55_RS07585 PF01339 CheB methylesterase APT55_RS07590 PF01739 CheR methyltransferase, SAM binding domain APT55_RS07590 PF03705 CheR methyltransferase, all-alpha domain APT55_RS07600 PF00672 HAMP domain APT55_RS07600 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07600 PF13426 PAS domain APT55_RS07605 PF00072 Response regulator receiver domain APT55_RS07605 PF00486 Transcriptional regulatory protein, C terminal APT55_RS07615 PF01494 FAD binding domain APT55_RS07620 PF00731 AIR carboxylase APT55_RS07625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT55_RS07630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT55_RS07635 PF03109 ABC1 family APT55_RS07640 PF00989 PAS fold APT55_RS07640 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07680 PF02660 Glycerol-3-phosphate acyltransferase APT55_RS07695 PF02581 Thiamine monophosphate synthase APT55_RS07710 PF06434 Aconitate hydratase 2 N-terminus APT55_RS07710 PF00330 Aconitase family (aconitate hydratase) APT55_RS07710 PF11791 Aconitate B N-terminal domain APT55_RS07715 PF00875 DNA photolyase APT55_RS07715 PF03441 FAD binding domain of DNA photolyase APT55_RS07725 PF01545 Cation efflux family APT55_RS07750 PF01546 Peptidase family M20/M25/M40 APT55_RS07750 PF07687 Peptidase dimerisation domain APT55_RS07760 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APT55_RS07760 PF02779 Transketolase, pyrimidine binding domain APT55_RS07760 PF02780 Transketolase, C-terminal domain APT55_RS07775 PF00471 Ribosomal protein L33 APT55_RS07780 PF01084 Ribosomal protein S18 APT55_RS07785 PF00773 RNB domain APT55_RS07805 PF01545 Cation efflux family APT55_RS07810 PF02560 Cyanate lyase C-terminal domain APT55_RS07815 PF11264 Thylakoid formation protein APT55_RS07825 PF00092 von Willebrand factor type A domain APT55_RS07830 PF01758 Sodium Bile acid symporter family APT55_RS07835 PF00067 Cytochrome P450 APT55_RS07840 PF00871 Acetokinase family APT55_RS07845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT55_RS07845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT55_RS07850 PF02638 Glycosyl hydrolase-like 10 APT55_RS07860 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS07865 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS07870 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APT55_RS07875 PF01933 Uncharacterised protein family UPF0052 APT55_RS07880 PF01252 Signal peptidase (SPase) II APT55_RS07885 PF02632 BioY family APT55_RS07890 PF04055 Radical SAM superfamily APT55_RS07890 PF06968 Biotin and Thiamin Synthesis associated domain APT55_RS07905 PF01979 Amidohydrolase family APT55_RS07915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT55_RS07915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT55_RS07920 PF02571 Precorrin-6x reductase CbiJ/CobK APT55_RS07925 PF00202 Aminotransferase class-III APT55_RS07935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT55_RS07935 PF00529 HlyD membrane-fusion protein of T1SS APT55_RS07940 PF02687 FtsX-like permease family APT55_RS07940 PF00005 ABC transporter APT55_RS07940 PF12704 MacB-like periplasmic core domain APT55_RS07950 PF00484 Carbonic anhydrase APT55_RS07955 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07955 PF02743 Cache domain APT55_RS07960 PF00005 ABC transporter APT55_RS07960 PF00664 ABC transporter transmembrane region APT55_RS07965 PF01434 Peptidase family M41 APT55_RS07965 PF17862 AAA+ lid domain APT55_RS07965 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS08000 PF02311 AraC-like ligand binding domain APT55_RS08000 PF12833 Helix-turn-helix domain APT55_RS08005 PF12833 Helix-turn-helix domain APT55_RS08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08010 PF09308 LuxQ, periplasmic APT55_RS08010 PF00072 Response regulator receiver domain APT55_RS08010 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08050 PF02325 YGGT family APT55_RS08055 PF03441 FAD binding domain of DNA photolyase APT55_RS08055 PF00875 DNA photolyase APT55_RS08080 PF00289 Biotin carboxylase, N-terminal domain APT55_RS08080 PF02785 Biotin carboxylase C-terminal domain APT55_RS08080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT55_RS08085 PF09347 Domain of unknown function (DUF1989) APT55_RS08090 PF09347 Domain of unknown function (DUF1989) APT55_RS08100 PF00005 ABC transporter APT55_RS08105 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS08110 PF00120 Glutamine synthetase, catalytic domain APT55_RS08115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08115 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08115 PF01627 Hpt domain APT55_RS08115 PF00072 Response regulator receiver domain APT55_RS08115 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT55_RS08120 PF13426 PAS domain APT55_RS08120 PF00072 Response regulator receiver domain APT55_RS08120 PF08448 PAS fold APT55_RS08120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08120 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08130 PF01746 tRNA (Guanine-1)-methyltransferase APT55_RS08135 PF03575 Peptidase family S51 APT55_RS08140 PF08443 RimK-like ATP-grasp domain APT55_RS08140 PF08245 Mur ligase middle domain APT55_RS08140 PF02875 Mur ligase family, glutamate ligase domain APT55_RS08145 PF09366 Protein of unknown function (DUF1997) APT55_RS08150 PF13460 NAD(P)H-binding APT55_RS08160 PF02583 Metal-sensitive transcriptional repressor APT55_RS08165 PF13180 PDZ domain APT55_RS08175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT55_RS08175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT55_RS08185 PF00581 Rhodanese-like domain APT55_RS08185 PF00899 ThiF family APT55_RS08195 PF01425 Amidase APT55_RS08215 PF03816 Cell envelope-related transcriptional attenuator domain APT55_RS08220 PF01050 Mannose-6-phosphate isomerase APT55_RS08220 PF00483 Nucleotidyl transferase APT55_RS08230 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APT55_RS08230 PF00117 Glutamine amidotransferase class-I APT55_RS08240 PF00636 Ribonuclease III domain APT55_RS08245 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT55_RS08245 PF00588 SpoU rRNA Methylase family APT55_RS08255 PF00561 alpha/beta hydrolase fold APT55_RS08265 PF03653 Uncharacterised protein family (UPF0093) APT55_RS08295 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS08300 PF00156 Phosphoribosyl transferase domain APT55_RS08305 PF04055 Radical SAM superfamily APT55_RS08305 PF06463 Molybdenum Cofactor Synthesis C APT55_RS08310 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS08310 PF00072 Response regulator receiver domain APT55_RS08310 PF01627 Hpt domain APT55_RS08310 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08310 PF00672 HAMP domain APT55_RS08315 PF04226 Transglycosylase associated protein APT55_RS08325 PF00011 Hsp20/alpha crystallin family APT55_RS08330 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT55_RS08335 PF08486 Stage II sporulation protein APT55_RS08340 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT55_RS08350 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS08355 PF00005 ABC transporter APT55_RS08360 PF00005 ABC transporter APT55_RS08380 PF00999 Sodium/hydrogen exchanger family APT55_RS08400 PF01546 Peptidase family M20/M25/M40 APT55_RS08400 PF07687 Peptidase dimerisation domain APT55_RS08405 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT55_RS08405 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT55_RS08410 PF01420 Type I restriction modification DNA specificity domain APT55_RS08425 PF02384 N-6 DNA Methylase APT55_RS08425 PF12161 HsdM N-terminal domain APT55_RS08430 PF08463 EcoEI R protein C-terminal APT55_RS08430 PF00271 Helicase conserved C-terminal domain APT55_RS08430 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APT55_RS08430 PF04851 Type III restriction enzyme, res subunit APT55_RS08445 PF00581 Rhodanese-like domain APT55_RS08445 PF17773 UPF0176 acylphosphatase like domain APT55_RS08450 PF12419 SNF2 Helicase protein APT55_RS08450 PF00271 Helicase conserved C-terminal domain APT55_RS08450 PF00176 SNF2 family N-terminal domain APT55_RS08455 PF00155 Aminotransferase class I and II APT55_RS08465 PF03683 Uncharacterised protein family (UPF0175) APT55_RS08480 PF13676 TIR domain APT55_RS08505 PF07859 alpha/beta hydrolase fold APT55_RS08525 PF00155 Aminotransferase class I and II APT55_RS08560 PF00069 Protein kinase domain APT55_RS08560 PF00805 Pentapeptide repeats (8 copies) APT55_RS08565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APT55_RS08565 PF01588 Putative tRNA binding domain APT55_RS08565 PF03147 Ferredoxin-fold anticodon binding domain APT55_RS08565 PF03483 B3/4 domain APT55_RS08565 PF03484 tRNA synthetase B5 domain APT55_RS08575 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS08590 PF00231 ATP synthase APT55_RS08595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT55_RS08595 PF00306 ATP synthase alpha/beta chain, C terminal domain APT55_RS08595 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT55_RS08600 PF00213 ATP synthase delta (OSCP) subunit APT55_RS08605 PF00430 ATP synthase B/B' CF(0) APT55_RS08610 PF00430 ATP synthase B/B' CF(0) APT55_RS08615 PF00137 ATP synthase subunit C APT55_RS08620 PF00119 ATP synthase A chain APT55_RS08625 PF12966 N-ATPase, AtpR subunit APT55_RS08630 PF13847 Methyltransferase domain APT55_RS08640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT55_RS08645 PF04542 Sigma-70 region 2 APT55_RS08645 PF04545 Sigma-70, region 4 APT55_RS08645 PF04539 Sigma-70 region 3 APT55_RS08670 PF00012 Hsp70 protein APT55_RS08675 PF00011 Hsp20/alpha crystallin family APT55_RS08680 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS08690 PF00266 Aminotransferase class-V APT55_RS08715 PF13676 TIR domain APT55_RS08720 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APT55_RS08725 PF00293 NUDIX domain APT55_RS08730 PF00875 DNA photolyase APT55_RS08730 PF03441 FAD binding domain of DNA photolyase APT55_RS08760 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APT55_RS08760 PF01676 Metalloenzyme superfamily APT55_RS08765 PF12848 ABC transporter APT55_RS08765 PF16326 ABC transporter C-terminal domain APT55_RS08765 PF00005 ABC transporter APT55_RS08785 PF00684 DnaJ central domain APT55_RS08785 PF01556 DnaJ C terminal domain APT55_RS08785 PF00226 DnaJ domain APT55_RS08790 PF00574 Clp protease APT55_RS08795 PF00574 Clp protease APT55_RS08800 PF00574 Clp protease APT55_RS08805 PF02224 Cytidylate kinase APT55_RS08805 PF02569 Pantoate-beta-alanine ligase APT55_RS08820 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS08820 PF16193 AAA C-terminal domain APT55_RS08820 PF12002 MgsA AAA+ ATPase C terminal APT55_RS08865 PF00158 Sigma-54 interaction domain APT55_RS08865 PF18024 Helix-turn-helix domain APT55_RS08880 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT55_RS08880 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT55_RS08885 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APT55_RS08885 PF13288 DXP reductoisomerase C-terminal domain APT55_RS08885 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APT55_RS08895 PF01183 Glycosyl hydrolases family 25 APT55_RS08905 PF02653 Branched-chain amino acid transport system / permease component APT55_RS08910 PF00005 ABC transporter APT55_RS08915 PF13407 Periplasmic binding protein domain APT55_RS08920 PF00395 S-layer homology domain APT55_RS08920 PF04966 Carbohydrate-selective porin, OprB family APT55_RS08930 PF13519 von Willebrand factor type A domain APT55_RS08930 PF01078 Magnesium chelatase, subunit ChlI APT55_RS08930 PF17863 AAA lid domain APT55_RS08935 PF01471 Putative peptidoglycan binding domain APT55_RS08935 PF07486 Cell Wall Hydrolase APT55_RS08945 PF02535 ZIP Zinc transporter APT55_RS08965 PF03462 PCRF domain APT55_RS08965 PF00472 RF-1 domain APT55_RS08970 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT55_RS08970 PF01571 Aminomethyltransferase folate-binding domain APT55_RS08975 PF00574 Clp protease APT55_RS08985 PF03190 Protein of unknown function, DUF255 APT55_RS08990 PF06745 KaiC APT55_RS08995 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08995 PF00989 PAS fold APT55_RS08995 PF11808 Phosphate regulon sensor protein PhoR APT55_RS09000 PF01738 Dienelactone hydrolase family APT55_RS09010 PF17894 Topo homolgy domain in CRISPR-associated endonuclease Cas9 APT55_RS09010 PF17893 CRISPR-associated endonuclease Cas9 beta-hairpin domain APT55_RS09010 PF18541 RuvC endonuclease subdomain 3 APT55_RS09010 PF18525 Cas9 C-terminal domain APT55_RS09010 PF01844 HNH endonuclease APT55_RS09010 PF18470 Cas9 alpha-helical lobe domain APT55_RS09045 PF13808 DDE_Tnp_1-associated APT55_RS09045 PF01609 Transposase DDE domain APT55_RS09050 PF00717 Peptidase S24-like APT55_RS09050 PF01726 LexA DNA binding domain APT55_RS09060 PF09299 Mu transposase, C-terminal APT55_RS09060 PF00665 Integrase core domain APT55_RS09075 PF00145 C-5 cytosine-specific DNA methylase APT55_RS09130 PF02570 Precorrin-8X methylmutase APT55_RS09135 PF07969 Amidohydrolase family APT55_RS09145 PF01176 Translation initiation factor 1A / IF-1 APT55_RS09150 PF00444 Ribosomal protein L36 APT55_RS09155 PF00416 Ribosomal protein S13/S18 APT55_RS09160 PF00411 Ribosomal protein S11 APT55_RS09165 PF01000 RNA polymerase Rpb3/RpoA insert domain APT55_RS09165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APT55_RS09165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APT55_RS09170 PF01196 Ribosomal protein L17 APT55_RS09175 PF01416 tRNA pseudouridine synthase APT55_RS09180 PF00572 Ribosomal protein L13 APT55_RS09185 PF00380 Ribosomal protein S9/S16 APT55_RS09190 PF01197 Ribosomal protein L31 APT55_RS09195 PF00472 RF-1 domain APT55_RS09195 PF03462 PCRF domain APT55_RS09230 PF13476 AAA domain APT55_RS09235 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT55_RS09235 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APT55_RS09250 PF00999 Sodium/hydrogen exchanger family APT55_RS09250 PF00582 Universal stress protein family APT55_RS09255 PF00072 Response regulator receiver domain APT55_RS09255 PF00486 Transcriptional regulatory protein, C terminal APT55_RS09265 PF12826 Helix-hairpin-helix motif APT55_RS09265 PF08459 UvrC Helix-hairpin-helix N-terminal APT55_RS09265 PF01541 GIY-YIG catalytic domain APT55_RS09265 PF02151 UvrB/uvrC motif APT55_RS09280 PF00486 Transcriptional regulatory protein, C terminal APT55_RS09280 PF00072 Response regulator receiver domain APT55_RS09285 PF00535 Glycosyl transferase family 2 APT55_RS09300 PF00989 PAS fold APT55_RS09300 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS09300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS09325 PF01765 Ribosome recycling factor APT55_RS09330 PF00696 Amino acid kinase family APT55_RS09335 PF02769 AIR synthase related protein, C-terminal domain APT55_RS09335 PF00586 AIR synthase related protein, N-terminal domain APT55_RS09335 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APT55_RS09340 PF13537 Glutamine amidotransferase domain APT55_RS09340 PF00156 Phosphoribosyl transferase domain APT55_RS09355 PF00232 Glycosyl hydrolase family 1 APT55_RS09365 PF02562 PhoH-like protein APT55_RS09370 PF03129 Anticodon binding domain APT55_RS09370 PF13393 Histidyl-tRNA synthetase APT55_RS09375 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS09375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT55_RS09380 PF00155 Aminotransferase class I and II APT55_RS09385 PF00216 Bacterial DNA-binding protein APT55_RS09400 PF01521 Iron-sulphur cluster biosynthesis APT55_RS09420 PF01794 Ferric reductase like transmembrane component APT55_RS09430 PF02910 Fumarate reductase flavoprotein C-term APT55_RS09430 PF00890 FAD binding domain APT55_RS09435 PF00989 PAS fold APT55_RS09435 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS09435 PF13426 PAS domain APT55_RS09435 PF13188 PAS domain APT55_RS09435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS09450 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) APT55_RS09455 PF00890 FAD binding domain APT55_RS09455 PF02910 Fumarate reductase flavoprotein C-term APT55_RS09475 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS09475 PF16450 Proteasomal ATPase OB C-terminal domain APT55_RS09475 PF17758 Proteasomal ATPase OB N-terminal domain APT55_RS09540 PF02163 Peptidase family M50 APT55_RS09540 PF13180 PDZ domain APT55_RS09545 PF00730 HhH-GPD superfamily base excision DNA repair protein APT55_RS09545 PF00633 Helix-hairpin-helix motif APT55_RS09550 PF00253 Ribosomal protein S14p/S29e APT55_RS09560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APT55_RS09575 PF02687 FtsX-like permease family APT55_RS09575 PF18075 FtsX extracellular domain APT55_RS09580 PF01327 Polypeptide deformylase APT55_RS09615 PF00668 Condensation domain APT55_RS09615 PF13193 AMP-binding enzyme C-terminal domain APT55_RS09615 PF00501 AMP-binding enzyme APT55_RS09615 PF00550 Phosphopantetheine attachment site APT55_RS09620 PF00501 AMP-binding enzyme APT55_RS09620 PF00668 Condensation domain APT55_RS09620 PF13193 AMP-binding enzyme C-terminal domain APT55_RS09620 PF00550 Phosphopantetheine attachment site APT55_RS09625 PF00501 AMP-binding enzyme APT55_RS09625 PF13193 AMP-binding enzyme C-terminal domain APT55_RS09630 PF16921 Tex protein YqgF-like domain APT55_RS09630 PF09371 Tex-like protein N-terminal domain APT55_RS09630 PF00575 S1 RNA binding domain APT55_RS09630 PF17674 HHH domain APT55_RS09655 PF01812 5-formyltetrahydrofolate cyclo-ligase family APT55_RS09665 PF00485 Phosphoribulokinase / Uridine kinase family APT55_RS09670 PF02686 Glu-tRNAGln amidotransferase C subunit APT55_RS09685 PF02768 DNA polymerase III beta subunit, C-terminal domain APT55_RS09685 PF02767 DNA polymerase III beta subunit, central domain APT55_RS09685 PF00712 DNA polymerase III beta subunit, N-terminal domain APT55_RS09700 PF00005 ABC transporter APT55_RS09705 PF08241 Methyltransferase domain APT55_RS09710 PF00589 Phage integrase family APT55_RS09715 PF00762 Ferrochelatase APT55_RS09720 PF00072 Response regulator receiver domain APT55_RS09725 PF17782 DprA winged helix domain APT55_RS09725 PF02481 DNA recombination-mediator protein A APT55_RS09740 PF06386 Gas vesicle synthesis protein GvpL/GvpF APT55_RS09745 PF05121 Gas vesicle protein K APT55_RS09745 PF00741 Gas vesicle protein APT55_RS09750 PF00741 Gas vesicle protein APT55_RS09755 PF07728 AAA domain (dynein-related subfamily) APT55_RS09765 PF00741 Gas vesicle protein APT55_RS09770 PF17862 AAA+ lid domain APT55_RS09770 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS09770 PF01434 Peptidase family M41 APT55_RS09775 PF02374 Anion-transporting ATPase APT55_RS09800 PF00263 Bacterial type II and III secretion system protein APT55_RS09800 PF03958 Bacterial type II/III secretion system short domain APT55_RS09805 PF17975 Ribonucleotide reductase alpha domain APT55_RS09825 PF08450 SMP-30/Gluconolactonase/LRE-like region APT55_RS09830 PF03631 Virulence factor BrkB APT55_RS09840 PF02033 Ribosome-binding factor A APT55_RS09955 PF02086 D12 class N6 adenine-specific DNA methyltransferase APT55_RS09975 PF00486 Transcriptional regulatory protein, C terminal APT55_RS09975 PF00072 Response regulator receiver domain APT55_RS09975 PF01627 Hpt domain APT55_RS09980 PF13426 PAS domain APT55_RS09980 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS09980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS09980 PF00672 HAMP domain APT55_RS09980 PF14827 Double sensory domain of two-component sensor kinase APT55_RS09990 PF13426 PAS domain APT55_RS09990 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS09990 PF00672 HAMP domain APT55_RS09990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10005 PF01584 CheW-like domain APT55_RS10005 PF00072 Response regulator receiver domain APT55_RS10010 PF01739 CheR methyltransferase, SAM binding domain APT55_RS10015 PF17200 Single Cache domain 2 APT55_RS10015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS10015 PF00672 HAMP domain APT55_RS10025 PF01584 CheW-like domain APT55_RS10025 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS10025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10025 PF01627 Hpt domain APT55_RS10025 PF00072 Response regulator receiver domain APT55_RS10030 PF00072 Response regulator receiver domain APT55_RS10030 PF01339 CheB methylesterase APT55_RS10035 PF00072 Response regulator receiver domain APT55_RS10035 PF00486 Transcriptional regulatory protein, C terminal APT55_RS10040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT55_RS10040 PF01411 tRNA synthetases class II (A) APT55_RS10040 PF02272 DHHA1 domain APT55_RS10060 PF02525 Flavodoxin-like fold APT55_RS10065 PF00989 PAS fold APT55_RS10065 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10070 PF00883 Cytosol aminopeptidase family, catalytic domain APT55_RS10070 PF02789 Cytosol aminopeptidase family, N-terminal domain APT55_RS10075 PF01464 Transglycosylase SLT domain APT55_RS10075 PF14718 Soluble lytic murein transglycosylase L domain APT55_RS10090 PF03239 Iron permease FTR1 family APT55_RS10095 PF01734 Patatin-like phospholipase APT55_RS10100 PF13802 Galactose mutarotase-like APT55_RS10100 PF17137 Domain of unknown function (DUF5110) APT55_RS10100 PF01055 Glycosyl hydrolases family 31 APT55_RS10100 PF16338 Domain of unknown function (DUF4968) APT55_RS10110 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10110 PF09308 LuxQ, periplasmic APT55_RS10110 PF00072 Response regulator receiver domain APT55_RS10115 PF01926 50S ribosome-binding GTPase APT55_RS10120 PF00582 Universal stress protein family APT55_RS10125 PF00162 Phosphoglycerate kinase APT55_RS10130 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT55_RS10130 PF00588 SpoU rRNA Methylase family APT55_RS10150 PF10396 GTP-binding protein TrmE N-terminus APT55_RS10150 PF12631 MnmE helical domain APT55_RS10150 PF01926 50S ribosome-binding GTPase APT55_RS10160 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APT55_RS10165 PF12849 PBP superfamily domain APT55_RS10170 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS10175 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS10180 PF00005 ABC transporter APT55_RS10185 PF02374 Anion-transporting ATPase APT55_RS10185 PF17886 HSP20-like domain found in ArsA APT55_RS10190 PF06071 Protein of unknown function (DUF933) APT55_RS10190 PF01926 50S ribosome-binding GTPase APT55_RS10200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain APT55_RS10200 PF01276 Orn/Lys/Arg decarboxylase, major domain APT55_RS10205 PF05175 Methyltransferase small domain APT55_RS10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10245 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS10245 PF00072 Response regulator receiver domain APT55_RS10245 PF01627 Hpt domain APT55_RS10245 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10245 PF00672 HAMP domain APT55_RS10260 PF00502 Phycobilisome protein APT55_RS10260 PF00427 Phycobilisome Linker polypeptide APT55_RS10265 PF01964 Radical SAM ThiC family APT55_RS10270 PF00072 Response regulator receiver domain APT55_RS10270 PF00486 Transcriptional regulatory protein, C terminal APT55_RS10275 PF00989 PAS fold APT55_RS10275 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10280 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10280 PF17149 Periplasmic sensor domain found in signal transduction proteins APT55_RS10280 PF01627 Hpt domain APT55_RS10280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10280 PF00072 Response regulator receiver domain APT55_RS10280 PF00672 HAMP domain APT55_RS10290 PF00486 Transcriptional regulatory protein, C terminal APT55_RS10290 PF00072 Response regulator receiver domain APT55_RS10300 PF00072 Response regulator receiver domain APT55_RS10300 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS10300 PF01584 CheW-like domain APT55_RS10300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10300 PF01627 Hpt domain APT55_RS10305 PF01584 CheW-like domain APT55_RS10310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS10310 PF08269 Cache domain APT55_RS10315 PF00072 Response regulator receiver domain APT55_RS10315 PF01339 CheB methylesterase APT55_RS10320 PF01739 CheR methyltransferase, SAM binding domain APT55_RS10320 PF03705 CheR methyltransferase, all-alpha domain APT55_RS10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10325 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10325 PF00989 PAS fold APT55_RS10330 PF13180 PDZ domain APT55_RS10345 PF00005 ABC transporter APT55_RS10345 PF02687 FtsX-like permease family APT55_RS10345 PF12704 MacB-like periplasmic core domain APT55_RS10350 PF01628 HrcA protein C terminal domain APT55_RS10365 PF00152 tRNA synthetases class II (D, K and N) APT55_RS10365 PF01336 OB-fold nucleic acid binding domain APT55_RS10380 PF00005 ABC transporter APT55_RS10380 PF03459 TOBE domain APT55_RS10380 PF17912 MalK OB fold domain APT55_RS10390 PF12965 Domain of unknown function (DUF3854) APT55_RS10415 PF05199 GMC oxidoreductase APT55_RS10415 PF00732 GMC oxidoreductase APT55_RS10420 PF00510 Cytochrome c oxidase subunit III APT55_RS10425 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT55_RS10430 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APT55_RS10430 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT55_RS10455 PF03808 Glycosyl transferase WecB/TagA/CpsF family APT55_RS10470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT55_RS10470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT55_RS10470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT55_RS10470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT55_RS10475 PF00343 Carbohydrate phosphorylase APT55_RS10480 PF00300 Histidine phosphatase superfamily (branch 1) APT55_RS10485 PF01433 Peptidase family M1 domain APT55_RS10495 PF04966 Carbohydrate-selective porin, OprB family APT55_RS10495 PF00395 S-layer homology domain APT55_RS10500 PF00128 Alpha amylase, catalytic domain APT55_RS10500 PF09154 Domain of unknown function (DUF1939) APT55_RS10505 PF02706 Chain length determinant protein APT55_RS10505 PF13807 G-rich domain on putative tyrosine kinase APT55_RS10505 PF13614 AAA domain APT55_RS10510 PF00395 S-layer homology domain APT55_RS10510 PF00963 Cohesin domain APT55_RS10515 PF00290 Tryptophan synthase alpha chain APT55_RS10525 PF10716 NADH dehydrogenase transmembrane subunit APT55_RS10540 PF07478 D-ala D-ala ligase C-terminus APT55_RS10540 PF01820 D-ala D-ala ligase N-terminus APT55_RS10545 PF00144 Beta-lactamase APT55_RS10550 PF01209 ubiE/COQ5 methyltransferase family APT55_RS10565 PF02685 Glucokinase APT55_RS10570 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APT55_RS10570 PF01243 Pyridoxamine 5'-phosphate oxidase APT55_RS10580 PF00571 CBS domain APT55_RS10580 PF02163 Peptidase family M50 APT55_RS10585 PF00905 Penicillin binding protein transpeptidase domain APT55_RS10585 PF06832 Penicillin-Binding Protein C-terminus Family APT55_RS10585 PF00912 Transglycosylase APT55_RS10590 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain APT55_RS10590 PF00207 Alpha-2-macroglobulin family APT55_RS10590 PF07703 Alpha-2-macroglobulin bait region domain APT55_RS10590 PF01835 MG2 domain APT55_RS10605 PF13439 Glycosyltransferase Family 4 APT55_RS10605 PF00534 Glycosyl transferases group 1 APT55_RS10625 PF00534 Glycosyl transferases group 1 APT55_RS10625 PF08323 Starch synthase catalytic domain APT55_RS10635 PF00005 ABC transporter APT55_RS10635 PF14524 Wzt C-terminal domain APT55_RS10645 PF12464 Maltose acetyltransferase APT55_RS10645 PF14602 Hexapeptide repeat of succinyl-transferase APT55_RS10650 PF00534 Glycosyl transferases group 1 APT55_RS10650 PF13439 Glycosyltransferase Family 4 APT55_RS10665 PF00534 Glycosyl transferases group 1 APT55_RS10665 PF13579 Glycosyl transferase 4-like domain APT55_RS10675 PF13614 AAA domain APT55_RS10680 PF10531 SLBB domain APT55_RS10680 PF02563 Polysaccharide biosynthesis/export protein APT55_RS10685 PF13439 Glycosyltransferase Family 4 APT55_RS10685 PF00534 Glycosyl transferases group 1 APT55_RS10690 PF00550 Phosphopantetheine attachment site APT55_RS10690 PF00975 Thioesterase domain APT55_RS10690 PF00501 AMP-binding enzyme APT55_RS10690 PF00668 Condensation domain APT55_RS10690 PF13193 AMP-binding enzyme C-terminal domain APT55_RS10730 PF01134 Glucose inhibited division protein A APT55_RS10730 PF13932 GidA associated domain APT55_RS10735 PF01726 LexA DNA binding domain APT55_RS10735 PF00717 Peptidase S24-like APT55_RS10760 PF00075 RNase H APT55_RS10770 PF07729 FCD domain APT55_RS10770 PF00392 Bacterial regulatory proteins, gntR family APT55_RS10775 PF07228 Stage II sporulation protein E (SpoIIE) APT55_RS10775 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain APT55_RS10780 PF02881 SRP54-type protein, helical bundle domain APT55_RS10780 PF00448 SRP54-type protein, GTPase domain APT55_RS10785 PF01029 NusB family APT55_RS10800 PF00486 Transcriptional regulatory protein, C terminal APT55_RS10800 PF00072 Response regulator receiver domain APT55_RS10810 PF00462 Glutaredoxin APT55_RS10815 PF01722 BolA-like protein APT55_RS10830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10830 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10830 PF00989 PAS fold APT55_RS10840 PF07465 Photosystem I protein M (PsaM) APT55_RS10865 PF04012 PspA/IM30 family APT55_RS10875 PF00350 Dynamin family APT55_RS10880 PF00350 Dynamin family APT55_RS10895 PF00657 GDSL-like Lipase/Acylhydrolase APT55_RS10900 PF07885 Ion channel APT55_RS10900 PF17655 Inward rectifier potassium channel C-terminal domain APT55_RS10905 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain APT55_RS10905 PF02837 Glycosyl hydrolases family 2, sugar binding domain APT55_RS10905 PF00703 Glycosyl hydrolases family 2 APT55_RS10905 PF16990 Carbohydrate binding module (family 35) APT55_RS10915 PF03706 Lysylphosphatidylglycerol synthase TM region APT55_RS10915 PF09924 Uncharacterised conserved protein (DUF2156) APT55_RS10995 PF01451 Low molecular weight phosphotyrosine protein phosphatase APT55_RS11000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT55_RS11000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT55_RS11005 PF00730 HhH-GPD superfamily base excision DNA repair protein APT55_RS11015 PF00196 Bacterial regulatory proteins, luxR family APT55_RS11015 PF00072 Response regulator receiver domain APT55_RS11020 PF03631 Virulence factor BrkB APT55_RS11025 PF04226 Transglycosylase associated protein APT55_RS11035 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase APT55_RS11050 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS11060 PF02609 Exonuclease VII small subunit APT55_RS11065 PF13742 OB-fold nucleic acid binding domain APT55_RS11065 PF02601 Exonuclease VII, large subunit APT55_RS11070 PF00154 recA bacterial DNA recombination protein APT55_RS11080 PF02769 AIR synthase related protein, C-terminal domain APT55_RS11080 PF00586 AIR synthase related protein, N-terminal domain APT55_RS11085 PF00072 Response regulator receiver domain APT55_RS11085 PF13188 PAS domain APT55_RS11085 PF08448 PAS fold APT55_RS11085 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS11085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS11090 PF00072 Response regulator receiver domain APT55_RS11095 PF00360 Phytochrome region APT55_RS11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS11095 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS11095 PF08446 PAS fold APT55_RS11095 PF01590 GAF domain APT55_RS11100 PF00072 Response regulator receiver domain APT55_RS11110 PF09619 Type III secretion system lipoprotein chaperone (YscW) APT55_RS11115 PF08450 SMP-30/Gluconolactonase/LRE-like region APT55_RS11140 PF00535 Glycosyl transferase family 2 APT55_RS11150 PF00535 Glycosyl transferase family 2 APT55_RS11165 PF00005 ABC transporter APT55_RS11170 PF10502 Signal peptidase, peptidase S26 APT55_RS11180 PF01741 Large-conductance mechanosensitive channel, MscL APT55_RS11185 PF17871 AAA lid domain APT55_RS11185 PF07724 AAA domain (Cdc48 subfamily) APT55_RS11185 PF02861 Clp amino terminal domain, pathogenicity island component APT55_RS11185 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS11185 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS11190 PF00583 Acetyltransferase (GNAT) family APT55_RS11205 PF00583 Acetyltransferase (GNAT) family APT55_RS11220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT55_RS11220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT55_RS11225 PF02457 DisA bacterial checkpoint controller nucleotide-binding APT55_RS11230 PF01255 Putative undecaprenyl diphosphate synthase APT55_RS11245 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APT55_RS11245 PF01488 Shikimate / quinate 5-dehydrogenase APT55_RS11245 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APT55_RS11250 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APT55_RS11255 PF08448 PAS fold APT55_RS11255 PF03705 CheR methyltransferase, all-alpha domain APT55_RS11255 PF01739 CheR methyltransferase, SAM binding domain APT55_RS11255 PF01339 CheB methylesterase APT55_RS11260 PF01339 CheB methylesterase APT55_RS11260 PF00072 Response regulator receiver domain APT55_RS11265 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS11265 PF09308 LuxQ, periplasmic APT55_RS11265 PF00072 Response regulator receiver domain APT55_RS11265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS11285 PF00583 Acetyltransferase (GNAT) family APT55_RS11315 PF01593 Flavin containing amine oxidoreductase APT55_RS11320 PF05193 Peptidase M16 inactive domain APT55_RS11320 PF00675 Insulinase (Peptidase family M16) APT55_RS11325 PF03881 Fructosamine kinase APT55_RS11335 PF00595 PDZ domain APT55_RS11335 PF03572 Peptidase family S41 APT55_RS11345 PF02798 Glutathione S-transferase, N-terminal domain APT55_RS11350 PF02533 Photosystem II 4 kDa reaction centre component APT55_RS11360 PF01702 Queuine tRNA-ribosyltransferase APT55_RS11365 PF00005 ABC transporter APT55_RS11370 PF00950 ABC 3 transport family APT55_RS11385 PF00483 Nucleotidyl transferase APT55_RS11390 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT55_RS11390 PF01571 Aminomethyltransferase folate-binding domain APT55_RS11395 PF01597 Glycine cleavage H-protein APT55_RS11400 PF02347 Glycine cleavage system P-protein APT55_RS11405 PF13662 Toprim domain APT55_RS11405 PF02132 RecR protein APT55_RS11410 PF01230 HIT domain APT55_RS11415 PF00005 ABC transporter APT55_RS11420 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS11425 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS11430 PF00395 S-layer homology domain APT55_RS11430 PF04966 Carbohydrate-selective porin, OprB family APT55_RS11435 PF12849 PBP superfamily domain APT55_RS11445 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS11450 PF01618 MotA/TolQ/ExbB proton channel family APT55_RS11480 PF00502 Phycobilisome protein APT55_RS11490 PF17871 AAA lid domain APT55_RS11490 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS11490 PF07724 AAA domain (Cdc48 subfamily) APT55_RS11490 PF02861 Clp amino terminal domain, pathogenicity island component APT55_RS11490 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS11500 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APT55_RS11505 PF00762 Ferrochelatase APT55_RS11520 PF02469 Fasciclin domain APT55_RS11530 PF02310 B12 binding domain APT55_RS11530 PF13282 Domain of unknown function (DUF4070) APT55_RS11530 PF04055 Radical SAM superfamily APT55_RS11560 PF00510 Cytochrome c oxidase subunit III APT55_RS11570 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT55_RS11575 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APT55_RS11575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT55_RS11590 PF06988 NifT/FixU protein APT55_RS11590 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT55_RS11595 PF04319 NifZ domain APT55_RS11600 PF00682 HMGL-like APT55_RS11605 PF11844 Domain of unknown function (DUF3364) APT55_RS11605 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS11610 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS11615 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APT55_RS11620 PF01592 NifU-like N terminal domain APT55_RS11620 PF01106 NifU-like domain APT55_RS11620 PF04324 BFD-like [2Fe-2S] binding domain APT55_RS11625 PF00266 Aminotransferase class-V APT55_RS11635 PF04055 Radical SAM superfamily APT55_RS11635 PF02579 Dinitrogenase iron-molybdenum cofactor APT55_RS11640 PF06426 Serine acetyltransferase, N-terminal APT55_RS11640 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS11650 PF00210 Ferritin-like domain APT55_RS11660 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS11665 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS11670 PF02579 Dinitrogenase iron-molybdenum cofactor APT55_RS11675 PF03270 Protein of unknown function, DUF269 APT55_RS11680 PF05082 Rop-like APT55_RS11685 PF03206 Nitrogen fixation protein NifW APT55_RS11690 PF00899 ThiF family APT55_RS11695 PF01521 Iron-sulphur cluster biosynthesis APT55_RS11700 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS11705 PF04023 FeoA domain APT55_RS11710 PF12838 4Fe-4S dicluster domain APT55_RS11715 PF03459 TOBE domain APT55_RS11725 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS11730 PF00005 ABC transporter APT55_RS11730 PF03459 TOBE domain APT55_RS11735 PF00296 Luciferase-like monooxygenase APT55_RS11745 PF01638 HxlR-like helix-turn-helix APT55_RS11755 PF02901 Pyruvate formate lyase-like APT55_RS11755 PF01228 Glycine radical APT55_RS11760 PF04055 Radical SAM superfamily APT55_RS11765 PF00465 Iron-containing alcohol dehydrogenase APT55_RS11765 PF00171 Aldehyde dehydrogenase family APT55_RS11770 PF13380 CoA binding domain APT55_RS11770 PF13607 Succinyl-CoA ligase like flavodoxin domain APT55_RS11770 PF00583 Acetyltransferase (GNAT) family APT55_RS11775 PF04055 Radical SAM superfamily APT55_RS11785 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APT55_RS11785 PF09363 XFP C-terminal domain APT55_RS11785 PF09364 XFP N-terminal domain APT55_RS11800 PF13847 Methyltransferase domain APT55_RS11810 PF13191 AAA ATPase domain APT55_RS11810 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS11820 PF05496 Holliday junction DNA helicase RuvB P-loop domain APT55_RS11820 PF05491 RuvB C-terminal winged helix domain APT55_RS11820 PF17864 RuvB AAA lid domain APT55_RS11835 PF00005 ABC transporter APT55_RS11840 PF05711 Macrocin-O-methyltransferase (TylF) APT55_RS11850 PF00936 BMC domain APT55_RS11855 PF04960 Glutaminase APT55_RS11860 PF01928 CYTH domain APT55_RS11865 PF00294 pfkB family carbohydrate kinase APT55_RS11870 PF16844 Dinitrogenase iron-molybdenum cofactor, N-terminal APT55_RS11870 PF02579 Dinitrogenase iron-molybdenum cofactor APT55_RS11880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT55_RS11900 PF01551 Peptidase family M23 APT55_RS11900 PF10145 Phage-related minor tail protein APT55_RS11900 PF01464 Transglycosylase SLT domain APT55_RS11915 PF00133 tRNA synthetases class I (I, L, M and V) APT55_RS11915 PF06827 Zinc finger found in FPG and IleRS APT55_RS11915 PF08264 Anticodon-binding domain of tRNA APT55_RS11925 PF01725 Ham1 family APT55_RS11935 PF01192 RNA polymerase Rpb6 APT55_RS11950 PF13091 PLD-like domain APT55_RS11955 PF00266 Aminotransferase class-V APT55_RS11965 PF00421 Photosystem II protein APT55_RS11970 PF00124 Photosynthetic reaction centre protein APT55_RS11975 PF02392 Ycf4 APT55_RS11980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT55_RS11985 PF00109 Beta-ketoacyl synthase, N-terminal domain APT55_RS11985 PF02801 Beta-ketoacyl synthase, C-terminal domain APT55_RS11990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS11995 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT55_RS11995 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT55_RS12000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APT55_RS12000 PF00925 GTP cyclohydrolase II APT55_RS12005 PF00989 PAS fold APT55_RS12005 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS12005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS12005 PF00672 HAMP domain APT55_RS12010 PF02843 Phosphoribosylglycinamide synthetase, C domain APT55_RS12010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APT55_RS12010 PF02844 Phosphoribosylglycinamide synthetase, N domain APT55_RS12020 PF03704 Bacterial transcriptional activator domain APT55_RS12020 PF00931 NB-ARC domain APT55_RS12020 PF00486 Transcriptional regulatory protein, C terminal APT55_RS12035 PF08448 PAS fold APT55_RS12035 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB APT55_RS12035 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS12035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS12035 PF00672 HAMP domain APT55_RS12040 PF00571 CBS domain APT55_RS12040 PF00005 ABC transporter APT55_RS12045 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS12055 PF00326 Prolyl oligopeptidase family APT55_RS12055 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APT55_RS12065 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT55_RS12065 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase APT55_RS12090 PF00355 Rieske [2Fe-2S] domain APT55_RS12095 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT55_RS12095 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT55_RS12105 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS12110 PF00005 ABC transporter APT55_RS12115 PF00005 ABC transporter APT55_RS12125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT55_RS12125 PF00384 Molybdopterin oxidoreductase APT55_RS12125 PF01568 Molydopterin dinucleotide binding domain APT55_RS12130 PF02586 SOS response associated peptidase (SRAP) APT55_RS12135 PF00581 Rhodanese-like domain APT55_RS12140 PF08460 Bacterial SH3 domain APT55_RS12140 PF01551 Peptidase family M23 APT55_RS12150 PF07549 SecD/SecF GG Motif APT55_RS12150 PF02355 Protein export membrane protein APT55_RS12180 PF13439 Glycosyltransferase Family 4 APT55_RS12180 PF00534 Glycosyl transferases group 1 APT55_RS12185 PF00348 Polyprenyl synthetase APT55_RS12190 PF00762 Ferrochelatase APT55_RS12195 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT55_RS12195 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT55_RS12200 PF00334 Nucleoside diphosphate kinase APT55_RS12205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT55_RS12205 PF17944 Arginine decarboxylase C-terminal helical extension APT55_RS12205 PF17810 Arginine decarboxylase helical bundle domain APT55_RS12225 PF10792 Protein of unknown function (DUF2605) APT55_RS12230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT55_RS12230 PF03129 Anticodon binding domain APT55_RS12230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT55_RS12260 PF00486 Transcriptional regulatory protein, C terminal APT55_RS12260 PF00072 Response regulator receiver domain APT55_RS12265 PF00196 Bacterial regulatory proteins, luxR family APT55_RS12265 PF00072 Response regulator receiver domain APT55_RS12275 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS12275 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT55_RS12290 PF13439 Glycosyltransferase Family 4 APT55_RS12290 PF00534 Glycosyl transferases group 1 APT55_RS12300 PF02565 Recombination protein O C terminal APT55_RS12300 PF11967 Recombination protein O N terminal APT55_RS12305 PF01791 DeoC/LacD family aldolase APT55_RS12315 PF01555 DNA methylase APT55_RS12320 PF01494 FAD binding domain APT55_RS12355 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APT55_RS12355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APT55_RS12370 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT55_RS12370 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS12375 PF01636 Phosphotransferase enzyme family APT55_RS12395 PF14403 Circularly permuted ATP-grasp type 2 APT55_RS12400 PF04168 A predicted alpha-helical domain with a conserved ER motif. APT55_RS12400 PF14403 Circularly permuted ATP-grasp type 2 APT55_RS12405 PF01618 MotA/TolQ/ExbB proton channel family APT55_RS12410 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS12415 PF00230 Major intrinsic protein APT55_RS12420 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain APT55_RS12420 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain APT55_RS12425 PF02341 RbcX protein APT55_RS12430 PF00101 Ribulose bisphosphate carboxylase, small chain APT55_RS12455 PF00072 Response regulator receiver domain APT55_RS12455 PF02954 Bacterial regulatory protein, Fis family APT55_RS12455 PF00158 Sigma-54 interaction domain APT55_RS12460 PF01209 ubiE/COQ5 methyltransferase family APT55_RS12465 PF04286 Protein of unknown function (DUF445) APT55_RS12480 PF03193 RsgA GTPase APT55_RS12490 PF01556 DnaJ C terminal domain APT55_RS12490 PF00684 DnaJ central domain APT55_RS12490 PF00226 DnaJ domain APT55_RS12495 PF00012 Hsp70 protein APT55_RS12500 PF01025 GrpE APT55_RS12505 PF00437 Type II/IV secretion system protein APT55_RS12505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APT55_RS12510 PF00437 Type II/IV secretion system protein APT55_RS12515 PF00482 Type II secretion system (T2SS), protein F APT55_RS12540 PF00069 Protein kinase domain APT55_RS12545 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS12545 PF18698 Histidine kinase sensor domain APT55_RS12545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS12545 PF00672 HAMP domain APT55_RS12545 PF00989 PAS fold APT55_RS12565 PF00557 Metallopeptidase family M24 APT55_RS12565 PF05195 Aminopeptidase P, N-terminal domain APT55_RS12580 PF00117 Glutamine amidotransferase class-I APT55_RS12585 PF01219 Prokaryotic diacylglycerol kinase APT55_RS12590 PF02130 Uncharacterized protein family UPF0054 APT55_RS12610 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS12620 PF17863 AAA lid domain APT55_RS12620 PF07726 ATPase family associated with various cellular activities (AAA) APT55_RS12650 PF03989 DNA gyrase C-terminal domain, beta-propeller APT55_RS12650 PF00521 DNA gyrase/topoisomerase IV, subunit A APT55_RS12655 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT55_RS12660 PF00361 Proton-conducting membrane transporter APT55_RS12695 PF00535 Glycosyl transferase family 2 APT55_RS12700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT55_RS12705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT55_RS12705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS12715 PF01593 Flavin containing amine oxidoreductase APT55_RS12725 PF08003 Protein of unknown function (DUF1698) APT55_RS12730 PF01593 Flavin containing amine oxidoreductase APT55_RS12740 PF02397 Bacterial sugar transferase APT55_RS12745 PF00534 Glycosyl transferases group 1 APT55_RS12750 PF13614 AAA domain APT55_RS12760 PF00535 Glycosyl transferase family 2 APT55_RS12765 PF00534 Glycosyl transferases group 1 APT55_RS12775 PF00535 Glycosyl transferase family 2 APT55_RS12785 PF13439 Glycosyltransferase Family 4 APT55_RS12785 PF00534 Glycosyl transferases group 1 APT55_RS12795 PF00149 Calcineurin-like phosphoesterase APT55_RS12800 PF02580 D-Tyr-tRNA(Tyr) deacylase APT55_RS12810 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS12810 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS12815 PF01406 tRNA synthetases class I (C) catalytic domain APT55_RS12815 PF09190 DALR domain APT55_RS12825 PF01523 Putative modulator of DNA gyrase APT55_RS12830 PF00857 Isochorismatase family APT55_RS12850 PF02254 TrkA-N domain APT55_RS12850 PF02080 TrkA-C domain APT55_RS12855 PF02386 Cation transport protein APT55_RS12860 PF08865 Domain of unknown function (DUF1830) APT55_RS12880 PF03775 Septum formation inhibitor MinC, C-terminal domain APT55_RS12885 PF00534 Glycosyl transferases group 1 APT55_RS12885 PF00862 Sucrose synthase APT55_RS12895 PF01551 Peptidase family M23 APT55_RS12895 PF04225 Opacity-associated protein A LysM-like domain APT55_RS12900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS12900 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS12900 PF00989 PAS fold APT55_RS12905 PF00271 Helicase conserved C-terminal domain APT55_RS12905 PF17191 RecG wedge domain APT55_RS12905 PF00270 DEAD/DEAH box helicase APT55_RS12920 PF00707 Translation initiation factor IF-3, C-terminal domain APT55_RS12920 PF05198 Translation initiation factor IF-3, N-terminal domain APT55_RS12925 PF00561 alpha/beta hydrolase fold APT55_RS12935 PF00005 ABC transporter APT55_RS12940 PF00223 Photosystem I psaA/psaB protein APT55_RS12945 PF00223 Photosystem I psaA/psaB protein APT55_RS12960 PF00679 Elongation factor G C-terminus APT55_RS12960 PF00009 Elongation factor Tu GTP binding domain APT55_RS12960 PF03144 Elongation factor Tu domain 2 APT55_RS12960 PF14492 Elongation Factor G, domain II APT55_RS12965 PF04966 Carbohydrate-selective porin, OprB family APT55_RS12965 PF00395 S-layer homology domain APT55_RS12970 PF02082 Transcriptional regulator APT55_RS12975 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS12980 PF00270 DEAD/DEAH box helicase APT55_RS12980 PF16124 RecQ zinc-binding APT55_RS12980 PF09382 RQC domain APT55_RS12980 PF00271 Helicase conserved C-terminal domain APT55_RS12980 PF00570 HRDC domain APT55_RS12995 PF09234 Domain of unknown function (DUF1963) APT55_RS13005 PF03120 NAD-dependent DNA ligase OB-fold domain APT55_RS13005 PF12826 Helix-hairpin-helix motif APT55_RS13005 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APT55_RS13005 PF01653 NAD-dependent DNA ligase adenylation domain APT55_RS13005 PF00533 BRCA1 C Terminus (BRCT) domain APT55_RS13015 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS13025 PF13411 MerR HTH family regulatory protein APT55_RS13035 PF00403 Heavy-metal-associated domain APT55_RS13045 PF01522 Polysaccharide deacetylase APT55_RS13055 PF00475 Imidazoleglycerol-phosphate dehydratase APT55_RS13070 PF00487 Fatty acid desaturase APT55_RS13090 PF00391 PEP-utilising enzyme, mobile domain APT55_RS13090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT55_RS13095 PF04966 Carbohydrate-selective porin, OprB family APT55_RS13105 PF00067 Cytochrome P450 APT55_RS13110 PF05969 Photosystem II complex subunit Ycf12 APT55_RS13115 PF00072 Response regulator receiver domain APT55_RS13115 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13120 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS13120 PF00672 HAMP domain APT55_RS13135 PF13409 Glutathione S-transferase, N-terminal domain APT55_RS13180 PF02397 Bacterial sugar transferase APT55_RS13185 PF16363 GDP-mannose 4,6 dehydratase APT55_RS13200 PF00005 ABC transporter APT55_RS13200 PF00664 ABC transporter transmembrane region APT55_RS13220 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13220 PF00072 Response regulator receiver domain APT55_RS13240 PF01509 TruB family pseudouridylate synthase (N terminal domain) APT55_RS13240 PF09157 Pseudouridine synthase II TruB, C-terminal APT55_RS13245 PF02391 MoaE protein APT55_RS13250 PF00082 Subtilase family APT55_RS13250 PF05922 Peptidase inhibitor I9 APT55_RS13255 PF01926 50S ribosome-binding GTPase APT55_RS13255 PF16360 GTP-binding GTPase Middle Region APT55_RS13255 PF13167 GTP-binding GTPase N-terminal APT55_RS13260 PF00692 dUTPase APT55_RS13270 PF00664 ABC transporter transmembrane region APT55_RS13270 PF00005 ABC transporter APT55_RS13275 PF09335 SNARE associated Golgi protein APT55_RS13290 PF13614 AAA domain APT55_RS13295 PF03808 Glycosyl transferase WecB/TagA/CpsF family APT55_RS13300 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS13305 PF00534 Glycosyl transferases group 1 APT55_RS13305 PF13439 Glycosyltransferase Family 4 APT55_RS13325 PF01747 ATP-sulfurylase APT55_RS13325 PF14306 PUA-like domain APT55_RS13340 PF08241 Methyltransferase domain APT55_RS13355 PF01979 Amidohydrolase family APT55_RS13370 PF00069 Protein kinase domain APT55_RS13410 PF01679 Proteolipid membrane potential modulator APT55_RS13430 PF00502 Phycobilisome protein APT55_RS13435 PF00502 Phycobilisome protein APT55_RS13440 PF03130 PBS lyase HEAT-like repeat APT55_RS13450 PF01383 CpcD/allophycocyanin linker domain APT55_RS13455 PF01383 CpcD/allophycocyanin linker domain APT55_RS13455 PF00427 Phycobilisome Linker polypeptide APT55_RS13460 PF00502 Phycobilisome protein APT55_RS13465 PF00502 Phycobilisome protein APT55_RS13470 PF01627 Hpt domain APT55_RS13470 PF00072 Response regulator receiver domain APT55_RS13470 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13475 PF00072 Response regulator receiver domain APT55_RS13475 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13480 PF09367 CpeS-like protein APT55_RS13495 PF00427 Phycobilisome Linker polypeptide APT55_RS13510 PF01207 Dihydrouridine synthase (Dus) APT55_RS13525 PF00005 ABC transporter APT55_RS13560 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APT55_RS13570 PF00072 Response regulator receiver domain APT55_RS13570 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13585 PF00588 SpoU rRNA Methylase family APT55_RS13595 PF01551 Peptidase family M23 APT55_RS13595 PF01476 LysM domain APT55_RS13620 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) APT55_RS13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS13655 PF03466 LysR substrate binding domain APT55_RS13660 PF00920 Dehydratase family APT55_RS13820 PF13361 UvrD-like helicase C-terminal domain APT55_RS13820 PF00580 UvrD/REP helicase N-terminal domain APT55_RS13845 PF00589 Phage integrase family APT55_RS13850 PF00589 Phage integrase family APT55_RS13860 PF00849 RNA pseudouridylate synthase APT55_RS13865 PF13439 Glycosyltransferase Family 4 APT55_RS13875 PF01370 NAD dependent epimerase/dehydratase family APT55_RS13880 PF06206 CpeT/CpcT family (DUF1001) APT55_RS13900 PF13676 TIR domain APT55_RS13925 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APT55_RS13945 PF00005 ABC transporter APT55_RS13950 PF12706 Beta-lactamase superfamily domain APT55_RS13950 PF00753 Metallo-beta-lactamase superfamily APT55_RS13955 PF08486 Stage II sporulation protein APT55_RS13965 PF11412 Disulphide bond corrector protein DsbC APT55_RS13965 PF02683 Cytochrome C biogenesis protein transmembrane region APT55_RS13970 PF02683 Cytochrome C biogenesis protein transmembrane region APT55_RS13975 PF00672 HAMP domain APT55_RS13975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS13975 PF18698 Histidine kinase sensor domain APT55_RS13975 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS13980 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13980 PF00072 Response regulator receiver domain APT55_RS13985 PF00140 Sigma-70 factor, region 1.2 APT55_RS13985 PF04545 Sigma-70, region 4 APT55_RS13985 PF04542 Sigma-70 region 2 APT55_RS13985 PF04539 Sigma-70 region 3 APT55_RS13990 PF00271 Helicase conserved C-terminal domain APT55_RS13990 PF18074 Primosomal protein N C-terminal domain APT55_RS13990 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APT55_RS13990 PF00270 DEAD/DEAH box helicase APT55_RS13990 PF17764 3′ DNA-binding domain (3′BD) APT55_RS13995 PF02547 Queuosine biosynthesis protein APT55_RS14005 PF02547 Queuosine biosynthesis protein APT55_RS14015 PF02021 Uncharacterised protein family UPF0102 APT55_RS14025 PF03851 UV-endonuclease UvdE APT55_RS14035 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS14035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT55_RS14040 PF00118 TCP-1/cpn60 chaperonin family APT55_RS14045 PF08543 Phosphomethylpyrimidine kinase APT55_RS14060 PF13808 DDE_Tnp_1-associated APT55_RS14060 PF01609 Transposase DDE domain APT55_RS14080 PF00486 Transcriptional regulatory protein, C terminal APT55_RS14080 PF00072 Response regulator receiver domain APT55_RS14085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14085 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14085 PF00989 PAS fold APT55_RS14085 PF00672 HAMP domain APT55_RS14090 PF00486 Transcriptional regulatory protein, C terminal APT55_RS14090 PF00072 Response regulator receiver domain APT55_RS14090 PF01627 Hpt domain APT55_RS14100 PF02163 Peptidase family M50 APT55_RS14100 PF00571 CBS domain APT55_RS14115 PF01139 tRNA-splicing ligase RtcB APT55_RS14120 PF05552 Conserved TM helix APT55_RS14120 PF00924 Mechanosensitive ion channel APT55_RS14130 PF13091 PLD-like domain APT55_RS14135 PF00149 Calcineurin-like phosphoesterase APT55_RS14160 PF02469 Fasciclin domain APT55_RS14170 PF13520 Amino acid permease APT55_RS14180 PF00989 PAS fold APT55_RS14180 PF16736 Single Cache-like APT55_RS14180 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14185 PF00486 Transcriptional regulatory protein, C terminal APT55_RS14185 PF00072 Response regulator receiver domain APT55_RS14200 PF00970 Oxidoreductase FAD-binding domain APT55_RS14200 PF00042 Globin APT55_RS14200 PF00175 Oxidoreductase NAD-binding domain APT55_RS14205 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT55_RS14205 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT55_RS14210 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV APT55_RS14220 PF01594 AI-2E family transporter APT55_RS14225 PF01594 AI-2E family transporter APT55_RS14240 PF03448 MgtE intracellular N domain APT55_RS14240 PF01769 Divalent cation transporter APT55_RS14240 PF00571 CBS domain APT55_RS14255 PF00999 Sodium/hydrogen exchanger family APT55_RS14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14260 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14265 PF01627 Hpt domain APT55_RS14265 PF00072 Response regulator receiver domain APT55_RS14265 PF00486 Transcriptional regulatory protein, C terminal APT55_RS14270 PF00072 Response regulator receiver domain APT55_RS14275 PF00690 Cation transporter/ATPase, N-terminus APT55_RS14275 PF00689 Cation transporting ATPase, C-terminus APT55_RS14290 PF11127 Protein of unknown function (DUF2892) APT55_RS14290 PF00581 Rhodanese-like domain APT55_RS14295 PF00753 Metallo-beta-lactamase superfamily APT55_RS14300 PF01925 Sulfite exporter TauE/SafE APT55_RS14315 PF01177 Asp/Glu/Hydantoin racemase APT55_RS14335 PF00005 ABC transporter APT55_RS14335 PF08402 TOBE domain APT55_RS14345 PF04966 Carbohydrate-selective porin, OprB family APT55_RS14345 PF00395 S-layer homology domain APT55_RS14350 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS14355 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS14370 PF00797 N-acetyltransferase APT55_RS14380 PF02222 ATP-grasp domain APT55_RS14385 PF00072 Response regulator receiver domain APT55_RS14385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS14385 PF01627 Hpt domain APT55_RS14385 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14385 PF00672 HAMP domain APT55_RS14390 PF00486 Transcriptional regulatory protein, C terminal APT55_RS14390 PF00072 Response regulator receiver domain APT55_RS14395 PF16736 Single Cache-like APT55_RS14395 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14395 PF00989 PAS fold APT55_RS14400 PF00072 Response regulator receiver domain APT55_RS14400 PF00672 HAMP domain APT55_RS14400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14400 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS14400 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14400 PF01627 Hpt domain APT55_RS14415 PF00561 alpha/beta hydrolase fold APT55_RS14420 PF00248 Aldo/keto reductase family APT55_RS14425 PF00579 tRNA synthetases class I (W and Y) APT55_RS14430 PF02219 Methylenetetrahydrofolate reductase APT55_RS14440 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS14445 PF13559 Domain of unknown function (DUF4129) APT55_RS14445 PF01841 Transglutaminase-like superfamily APT55_RS14445 PF11992 Domain of unknown function (DUF3488) APT55_RS14455 PF00448 SRP54-type protein, GTPase domain APT55_RS14455 PF02881 SRP54-type protein, helical bundle domain APT55_RS14455 PF02978 Signal peptide binding domain APT55_RS14470 PF00886 Ribosomal protein S16 APT55_RS14475 PF00189 Ribosomal protein S3, C-terminal domain APT55_RS14475 PF07650 KH domain APT55_RS14490 PF16363 GDP-mannose 4,6 dehydratase APT55_RS14500 PF13477 Glycosyl transferase 4-like APT55_RS14500 PF00534 Glycosyl transferases group 1 APT55_RS14505 PF01368 DHH family APT55_RS14505 PF17768 RecJ OB domain APT55_RS14505 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APT55_RS14505 PF02272 DHHA1 domain APT55_RS14510 PF02514 CobN/Magnesium Chelatase APT55_RS14510 PF11965 Domain of unknown function (DUF3479) APT55_RS14520 PF01547 Bacterial extracellular solute-binding protein APT55_RS14525 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS14530 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS14535 PF03459 TOBE domain APT55_RS14535 PF17912 MalK OB fold domain APT55_RS14535 PF00005 ABC transporter APT55_RS14560 PF05199 GMC oxidoreductase APT55_RS14560 PF00732 GMC oxidoreductase APT55_RS14705 PF00005 ABC transporter APT55_RS14710 PF12704 MacB-like periplasmic core domain APT55_RS14710 PF02687 FtsX-like permease family APT55_RS14710 PF00005 ABC transporter APT55_RS14725 PF00561 alpha/beta hydrolase fold APT55_RS14730 PF03707 Bacterial signalling protein N terminal repeat APT55_RS14730 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS14730 PF00563 EAL domain APT55_RS14735 PF00850 Histone deacetylase domain APT55_RS14740 PF00881 Nitroreductase family APT55_RS14775 PF01472 PUA domain APT55_RS14775 PF00696 Amino acid kinase family APT55_RS14780 PF03808 Glycosyl transferase WecB/TagA/CpsF family APT55_RS14790 PF00156 Phosphoribosyl transferase domain APT55_RS14795 PF01070 FMN-dependent dehydrogenase APT55_RS14800 PF01773 Na+ dependent nucleoside transporter N-terminus APT55_RS14800 PF07662 Na+ dependent nucleoside transporter C-terminus APT55_RS14800 PF07670 Nucleoside recognition APT55_RS14820 PF01783 Ribosomal L32p protein family APT55_RS14825 PF00174 Oxidoreductase molybdopterin binding domain APT55_RS14835 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APT55_RS14835 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APT55_RS14840 PF00348 Polyprenyl synthetase APT55_RS14845 PF02681 Divergent PAP2 family APT55_RS14855 PF13676 TIR domain APT55_RS14865 PF03773 Predicted permease APT55_RS14870 PF02517 CPBP intramembrane metalloprotease APT55_RS14885 PF00403 Heavy-metal-associated domain APT55_RS14890 PF00498 FHA domain APT55_RS14890 PF00563 EAL domain APT55_RS14890 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS14900 PF02223 Thymidylate kinase APT55_RS14905 PF00069 Protein kinase domain APT55_RS14910 PF13439 Glycosyltransferase Family 4 APT55_RS14910 PF00534 Glycosyl transferases group 1 APT55_RS14915 PF02016 LD-carboxypeptidase N-terminal domain APT55_RS14915 PF17676 LD-carboxypeptidase C-terminal domain APT55_RS14920 PF00931 NB-ARC domain APT55_RS14920 PF00400 WD domain, G-beta repeat APT55_RS14945 PF01553 Acyltransferase APT55_RS14950 PF00072 Response regulator receiver domain APT55_RS14950 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14950 PF01627 Hpt domain APT55_RS14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14950 PF00672 HAMP domain APT55_RS14950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS14965 PF08241 Methyltransferase domain APT55_RS14995 PF16363 GDP-mannose 4,6 dehydratase APT55_RS15000 PF00534 Glycosyl transferases group 1 APT55_RS15000 PF13477 Glycosyl transferase 4-like APT55_RS15005 PF13439 Glycosyltransferase Family 4 APT55_RS15005 PF00534 Glycosyl transferases group 1 APT55_RS15025 PF17806 Sarcosine oxidase A3 domain APT55_RS15025 PF01571 Aminomethyltransferase folate-binding domain APT55_RS15025 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT55_RS15025 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS15035 PF18460 Heterocyst differentiation regulator C-terminal Hood domain APT55_RS15035 PF03574 Peptidase family S48 APT55_RS15040 PF01797 Transposase IS200 like APT55_RS15045 PF12838 4Fe-4S dicluster domain APT55_RS15055 PF01791 DeoC/LacD family aldolase APT55_RS15060 PF12697 Alpha/beta hydrolase family APT55_RS15070 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 APT55_RS15070 PF00535 Glycosyl transferase family 2 APT55_RS15075 PF08323 Starch synthase catalytic domain APT55_RS15075 PF00534 Glycosyl transferases group 1 APT55_RS15090 PF00005 ABC transporter APT55_RS15090 PF17912 MalK OB fold domain APT55_RS15095 PF00072 Response regulator receiver domain APT55_RS15100 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS15105 PF12911 N-terminal TM domain of oligopeptide transport permease C APT55_RS15105 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS15120 PF17275 Family of unknown function (DUF5340) APT55_RS15125 PF00218 Indole-3-glycerol phosphate synthase APT55_RS15130 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS15130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT55_RS15140 PF03989 DNA gyrase C-terminal domain, beta-propeller APT55_RS15140 PF00521 DNA gyrase/topoisomerase IV, subunit A APT55_RS15145 PF01370 NAD dependent epimerase/dehydratase family APT55_RS15145 PF08338 Domain of unknown function (DUF1731) APT55_RS15185 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APT55_RS15185 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APT55_RS15195 PF00860 Permease family APT55_RS15200 PF00750 tRNA synthetases class I (R) APT55_RS15200 PF05746 DALR anticodon binding domain APT55_RS15200 PF03485 Arginyl tRNA synthetase N terminal domain APT55_RS15210 PF01925 Sulfite exporter TauE/SafE APT55_RS15215 PF01327 Polypeptide deformylase APT55_RS15220 PF00005 ABC transporter APT55_RS15220 PF00664 ABC transporter transmembrane region APT55_RS15230 PF01063 Amino-transferase class IV APT55_RS15235 PF01119 DNA mismatch repair protein, C-terminal domain APT55_RS15235 PF08676 MutL C terminal dimerisation domain APT55_RS15245 PF00862 Sucrose synthase APT55_RS15245 PF00534 Glycosyl transferases group 1 APT55_RS15250 PF00586 AIR synthase related protein, N-terminal domain APT55_RS15250 PF02769 AIR synthase related protein, C-terminal domain APT55_RS15265 PF00795 Carbon-nitrogen hydrolase APT55_RS15285 PF05532 CsbD-like APT55_RS15290 PF00271 Helicase conserved C-terminal domain APT55_RS15290 PF04851 Type III restriction enzyme, res subunit APT55_RS15290 PF02151 UvrB/uvrC motif APT55_RS15290 PF12344 Ultra-violet resistance protein B APT55_RS15290 PF17757 UvrB interaction domain APT55_RS15300 PF00248 Aldo/keto reductase family APT55_RS15305 PF03209 PUCC protein APT55_RS15310 PF00578 AhpC/TSA family APT55_RS15325 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment APT55_RS15325 PF01297 Zinc-uptake complex component A periplasmic APT55_RS15330 PF00005 ABC transporter APT55_RS15335 PF00950 ABC 3 transport family APT55_RS15340 PF00005 ABC transporter APT55_RS15355 PF04966 Carbohydrate-selective porin, OprB family APT55_RS15355 PF00395 S-layer homology domain APT55_RS15360 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS15380 PF04966 Carbohydrate-selective porin, OprB family APT55_RS15380 PF00395 S-layer homology domain APT55_RS15385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS15415 PF00535 Glycosyl transferase family 2 APT55_RS15420 PF16363 GDP-mannose 4,6 dehydratase APT55_RS15425 PF00005 ABC transporter APT55_RS15445 PF13676 TIR domain APT55_RS15460 PF00156 Phosphoribosyl transferase domain APT55_RS15475 PF01545 Cation efflux family APT55_RS15475 PF16916 Dimerisation domain of Zinc Transporter APT55_RS15495 PF01106 NifU-like domain APT55_RS15505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS15505 PF01627 Hpt domain APT55_RS15505 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS15505 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS15505 PF00672 HAMP domain APT55_RS15505 PF00072 Response regulator receiver domain APT55_RS15515 PF00009 Elongation factor Tu GTP binding domain APT55_RS15515 PF06421 GTP-binding protein LepA C-terminus APT55_RS15515 PF00679 Elongation factor G C-terminus APT55_RS15515 PF03144 Elongation factor Tu domain 2 APT55_RS15520 PF01370 NAD dependent epimerase/dehydratase family APT55_RS15525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT55_RS15525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT55_RS15525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT55_RS15540 PF01551 Peptidase family M23 APT55_RS15540 PF08460 Bacterial SH3 domain APT55_RS15555 PF00557 Metallopeptidase family M24 APT55_RS15555 PF05195 Aminopeptidase P, N-terminal domain APT55_RS15560 PF02909 Tetracyclin repressor-like, C-terminal domain APT55_RS15560 PF00440 Bacterial regulatory proteins, tetR family APT55_RS15585 PF02532 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) APT55_RS15610 PF02468 Photosystem II reaction centre N protein (psbN) APT55_RS15615 PF00999 Sodium/hydrogen exchanger family APT55_RS15625 PF04122 Putative cell wall binding repeat 2 APT55_RS15625 PF01520 N-acetylmuramoyl-L-alanine amidase APT55_RS15645 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS15655 PF01177 Asp/Glu/Hydantoin racemase APT55_RS15665 PF00072 Response regulator receiver domain APT55_RS15665 PF00196 Bacterial regulatory proteins, luxR family APT55_RS15670 PF00672 HAMP domain APT55_RS15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS15670 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS15670 PF13426 PAS domain APT55_RS15680 PF00183 Hsp90 protein APT55_RS15695 PF03372 Endonuclease/Exonuclease/phosphatase family APT55_RS15700 PF13396 Phospholipase_D-nuclease N-terminal APT55_RS15700 PF13091 PLD-like domain APT55_RS15720 PF01926 50S ribosome-binding GTPase APT55_RS15720 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT55_RS15750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS15750 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS15750 PF00989 PAS fold APT55_RS15750 PF16736 Single Cache-like APT55_RS15755 PF00361 Proton-conducting membrane transporter APT55_RS15760 PF01751 Toprim domain APT55_RS15760 PF13368 Topoisomerase C-terminal repeat APT55_RS15760 PF01131 DNA topoisomerase APT55_RS15775 PF12728 Helix-turn-helix domain APT55_RS15815 PF13784 Fic/DOC family N-terminal APT55_RS15815 PF02661 Fic/DOC family APT55_RS15820 PF03707 Bacterial signalling protein N terminal repeat APT55_RS15820 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS15820 PF00563 EAL domain APT55_RS15885 PF01555 DNA methylase APT55_RS16010 PF03372 Endonuclease/Exonuclease/phosphatase family APT55_RS16015 PF00069 Protein kinase domain APT55_RS16020 PF01425 Amidase APT55_RS16030 PF01593 Flavin containing amine oxidoreductase APT55_RS16035 PF01814 Hemerythrin HHE cation binding domain APT55_RS16045 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS16050 PF00005 ABC transporter APT55_RS16060 PF00005 ABC transporter APT55_RS16075 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS16080 PF12697 Alpha/beta hydrolase family APT55_RS16085 PF05193 Peptidase M16 inactive domain APT55_RS16085 PF00675 Insulinase (Peptidase family M16) APT55_RS16090 PF12704 MacB-like periplasmic core domain APT55_RS16090 PF00005 ABC transporter APT55_RS16090 PF02687 FtsX-like permease family APT55_RS16110 PF04545 Sigma-70, region 4 APT55_RS16110 PF04539 Sigma-70 region 3 APT55_RS16110 PF04542 Sigma-70 region 2 APT55_RS16110 PF00140 Sigma-70 factor, region 1.2 APT55_RS16115 PF00583 Acetyltransferase (GNAT) family APT55_RS16120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT55_RS16125 PF00440 Bacterial regulatory proteins, tetR family APT55_RS16125 PF17932 Tetracyclin repressor-like, C-terminal domain APT55_RS16130 PF00005 ABC transporter APT55_RS16130 PF00664 ABC transporter transmembrane region APT55_RS16135 PF01634 ATP phosphoribosyltransferase APT55_RS16140 PF00486 Transcriptional regulatory protein, C terminal APT55_RS16140 PF00072 Response regulator receiver domain APT55_RS16155 PF03239 Iron permease FTR1 family APT55_RS16160 PF00781 Diacylglycerol kinase catalytic domain APT55_RS16160 PF02142 MGS-like domain APT55_RS16165 PF01241 Photosystem I psaG / psaK APT55_RS16170 PF01425 Amidase APT55_RS16180 PF01425 Amidase APT55_RS16185 PF01220 Dehydroquinase class II APT55_RS16190 PF18146 Damage-inducible protein CinA KH domain APT55_RS16190 PF00994 Probable molybdopterin binding domain APT55_RS16190 PF02464 Competence-damaged protein APT55_RS16195 PF00953 Glycosyl transferase family 4 APT55_RS16200 PF00464 Serine hydroxymethyltransferase APT55_RS16210 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS16210 PF12804 MobA-like NTP transferase domain APT55_RS16225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT55_RS16225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT55_RS16225 PF00205 Thiamine pyrophosphate enzyme, central domain APT55_RS16255 PF00535 Glycosyl transferase family 2 APT55_RS16285 PF01435 Peptidase family M48 APT55_RS16290 PF01694 Rhomboid family APT55_RS16295 PF03055 Retinal pigment epithelial membrane protein APT55_RS16300 PF03092 BT1 family APT55_RS16305 PF00762 Ferrochelatase APT55_RS16315 PF01343 Peptidase family S49 APT55_RS16320 PF00892 EamA-like transporter family APT55_RS16365 PF01556 DnaJ C terminal domain APT55_RS16365 PF00226 DnaJ domain APT55_RS16365 PF00684 DnaJ central domain APT55_RS16375 PF00534 Glycosyl transferases group 1 APT55_RS16375 PF13439 Glycosyltransferase Family 4 APT55_RS16380 PF00534 Glycosyl transferases group 1 APT55_RS16385 PF13439 Glycosyltransferase Family 4 APT55_RS16400 PF00072 Response regulator receiver domain APT55_RS16400 PF00486 Transcriptional regulatory protein, C terminal APT55_RS16405 PF01513 ATP-NAD kinase APT55_RS16415 PF01022 Bacterial regulatory protein, arsR family APT55_RS16420 PF08041 PetM family of cytochrome b6f complex subunit 7 APT55_RS16425 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT55_RS16435 PF01678 Diaminopimelate epimerase APT55_RS16460 PF00999 Sodium/hydrogen exchanger family APT55_RS16460 PF02254 TrkA-N domain APT55_RS16465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS16465 PF07689 KaiB domain APT55_RS16465 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS16475 PF01523 Putative modulator of DNA gyrase APT55_RS16480 PF02542 YgbB family APT55_RS16485 PF00672 HAMP domain APT55_RS16485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS16485 PF13426 PAS domain APT55_RS16485 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS16490 PF02531 PsaD APT55_RS16495 PF04715 Anthranilate synthase component I, N terminal region APT55_RS16495 PF00425 chorismate binding enzyme APT55_RS16515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APT55_RS16515 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APT55_RS16520 PF04055 Radical SAM superfamily APT55_RS16530 PF02617 ATP-dependent Clp protease adaptor protein ClpS APT55_RS16540 PF01740 STAS domain APT55_RS16545 PF00919 Uncharacterized protein family UPF0004 APT55_RS16545 PF04055 Radical SAM superfamily APT55_RS16545 PF18693 TRAM domain APT55_RS16555 PF10150 Ribonuclease E/G family APT55_RS16560 PF01351 Ribonuclease HII APT55_RS16570 PF00800 Prephenate dehydratase APT55_RS16570 PF01817 Chorismate mutase type II APT55_RS16570 PF01842 ACT domain APT55_RS16580 PF00338 Ribosomal protein S10p/S20e APT55_RS16595 PF03144 Elongation factor Tu domain 2 APT55_RS16595 PF00009 Elongation factor Tu GTP binding domain APT55_RS16595 PF03143 Elongation factor Tu C-terminal domain APT55_RS16600 PF00679 Elongation factor G C-terminus APT55_RS16600 PF03144 Elongation factor Tu domain 2 APT55_RS16600 PF14492 Elongation Factor G, domain II APT55_RS16600 PF03764 Elongation factor G, domain IV APT55_RS16600 PF00009 Elongation factor Tu GTP binding domain APT55_RS16605 PF00177 Ribosomal protein S7p/S5e APT55_RS16610 PF00164 Ribosomal protein S12/S23 APT55_RS16615 PF01521 Iron-sulphur cluster biosynthesis APT55_RS16620 PF00483 Nucleotidyl transferase APT55_RS16620 PF01050 Mannose-6-phosphate isomerase APT55_RS16625 PF09992 Phosphodiester glycosidase APT55_RS16625 PF12708 Pectate lyase superfamily protein APT55_RS16630 PF04898 Glutamate synthase central domain APT55_RS16630 PF01645 Conserved region in glutamate synthase APT55_RS16630 PF00310 Glutamine amidotransferases class-II APT55_RS16630 PF01493 GXGXG motif APT55_RS16655 PF00753 Metallo-beta-lactamase superfamily APT55_RS16655 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APT55_RS16655 PF17770 Ribonuclease J C-terminal domain APT55_RS16660 PF00701 Dihydrodipicolinate synthetase family APT55_RS16665 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT55_RS16665 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT55_RS16670 PF05698 Bacterial trigger factor protein (TF) C-terminus APT55_RS16670 PF05697 Bacterial trigger factor protein (TF) APT55_RS16670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT55_RS16675 PF00574 Clp protease APT55_RS16680 PF07724 AAA domain (Cdc48 subfamily) APT55_RS16680 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS16680 PF06689 ClpX C4-type zinc finger APT55_RS16685 PF00561 alpha/beta hydrolase fold APT55_RS16690 PF04055 Radical SAM superfamily APT55_RS16695 PF00196 Bacterial regulatory proteins, luxR family APT55_RS16705 PF00124 Photosynthetic reaction centre protein APT55_RS16710 PF13676 TIR domain APT55_RS16725 PF01817 Chorismate mutase type II APT55_RS16730 PF08245 Mur ligase middle domain APT55_RS16730 PF02875 Mur ligase family, glutamate ligase domain APT55_RS16735 PF01029 NusB family APT55_RS16735 PF01189 16S rRNA methyltransferase RsmB/F APT55_RS16750 PF00912 Transglycosylase APT55_RS16750 PF00905 Penicillin binding protein transpeptidase domain APT55_RS16755 PF01040 UbiA prenyltransferase family APT55_RS16780 PF10397 Adenylosuccinate lyase C-terminus APT55_RS16780 PF00206 Lyase APT55_RS16785 PF00857 Isochorismatase family APT55_RS16795 PF01895 PhoU domain APT55_RS16800 PF12773 Double zinc ribbon APT55_RS16800 PF00498 FHA domain APT55_RS16810 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APT55_RS16810 PF00953 Glycosyl transferase family 4 APT55_RS16835 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS16840 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS16845 PF13416 Bacterial extracellular solute-binding protein APT55_RS16850 PF00005 ABC transporter APT55_RS16850 PF08402 TOBE domain APT55_RS16855 PF11780 Protein of unknown function (DUF3318) APT55_RS16860 PF01701 Photosystem I reaction centre subunit IX / PsaJ APT55_RS16865 PF02507 Photosystem I reaction centre subunit III APT55_RS16870 PF00814 Glycoprotease family APT55_RS16965 PF00072 Response regulator receiver domain APT55_RS16965 PF00486 Transcriptional regulatory protein, C terminal APT55_RS16970 PF00072 Response regulator receiver domain APT55_RS16980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS16980 PF01590 GAF domain APT55_RS16985 PF01584 CheW-like domain APT55_RS16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS16985 PF00072 Response regulator receiver domain APT55_RS16985 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS16985 PF01627 Hpt domain APT55_RS16995 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 APT55_RS16995 PF00535 Glycosyl transferase family 2 APT55_RS17015 PF03109 ABC1 family APT55_RS17020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT55_RS17025 PF03649 Uncharacterised protein family (UPF0014) APT55_RS17030 PF07689 KaiB domain APT55_RS17035 PF04055 Radical SAM superfamily APT55_RS17055 PF00072 Response regulator receiver domain APT55_RS17060 PF00171 Aldehyde dehydrogenase family APT55_RS17065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT55_RS17065 PF00205 Thiamine pyrophosphate enzyme, central domain APT55_RS17065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT55_RS17070 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS17080 PF00535 Glycosyl transferase family 2 APT55_RS17090 PF02441 Flavoprotein APT55_RS17095 PF08206 Ribonuclease B OB domain APT55_RS17095 PF00773 RNB domain APT55_RS17095 PF00575 S1 RNA binding domain APT55_RS17095 PF17876 Cold shock domain APT55_RS17100 PF06965 Na+/H+ antiporter 1 APT55_RS17100 PF13462 Thioredoxin APT55_RS17110 PF00543 Nitrogen regulatory protein P-II APT55_RS17120 PF14489 QueF-like protein APT55_RS17125 PF02915 Rubrerythrin APT55_RS17130 PF01126 Heme oxygenase APT55_RS17135 PF04055 Radical SAM superfamily APT55_RS17135 PF06969 HemN C-terminal domain APT55_RS17140 PF00963 Cohesin domain APT55_RS17140 PF00395 S-layer homology domain APT55_RS17155 PF00502 Phycobilisome protein APT55_RS17175 PF13537 Glutamine amidotransferase domain APT55_RS17175 PF00733 Asparagine synthase APT55_RS17180 PF03912 Psb28 protein APT55_RS17185 PF00994 Probable molybdopterin binding domain APT55_RS17190 PF00163 Ribosomal protein S4/S9 N-terminal domain APT55_RS17190 PF01479 S4 domain APT55_RS17195 PF00072 Response regulator receiver domain APT55_RS17200 PF00775 Dioxygenase APT55_RS17200 PF04444 Catechol dioxygenase N terminus APT55_RS17210 PF00072 Response regulator receiver domain APT55_RS17210 PF00486 Transcriptional regulatory protein, C terminal APT55_RS17215 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS17215 PF00672 HAMP domain APT55_RS17215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS17220 PF01728 FtsJ-like methyltransferase APT55_RS17220 PF18125 RlmM ferredoxin-like domain APT55_RS17255 PF00072 Response regulator receiver domain APT55_RS17255 PF00486 Transcriptional regulatory protein, C terminal APT55_RS17255 PF01627 Hpt domain APT55_RS17265 PF00488 MutS domain V APT55_RS17265 PF01624 MutS domain I APT55_RS17265 PF05190 MutS family domain IV APT55_RS17265 PF05188 MutS domain II APT55_RS17265 PF05192 MutS domain III APT55_RS17270 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS17270 PF03707 Bacterial signalling protein N terminal repeat APT55_RS17270 PF00563 EAL domain APT55_RS17275 PF00561 alpha/beta hydrolase fold APT55_RS17280 PF00849 RNA pseudouridylate synthase APT55_RS17290 PF07859 alpha/beta hydrolase fold APT55_RS17350 PF00916 Sulfate permease family APT55_RS17350 PF01740 STAS domain APT55_RS17360 PF00977 Histidine biosynthesis protein APT55_RS17375 PF01679 Proteolipid membrane potential modulator APT55_RS17380 PF00581 Rhodanese-like domain APT55_RS17400 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT55_RS17405 PF00453 Ribosomal protein L20 APT55_RS17410 PF01632 Ribosomal protein L35 APT55_RS17415 PF04966 Carbohydrate-selective porin, OprB family APT55_RS17415 PF00395 S-layer homology domain APT55_RS17420 PF02576 RimP N-terminal domain APT55_RS17425 PF00575 S1 RNA binding domain APT55_RS17425 PF08529 NusA N-terminal domain APT55_RS17425 PF13184 NusA-like KH domain APT55_RS17435 PF04760 Translation initiation factor IF-2, N-terminal region APT55_RS17435 PF00009 Elongation factor Tu GTP binding domain APT55_RS17435 PF11987 Translation-initiation factor 2 APT55_RS17455 PF13520 Amino acid permease APT55_RS17480 PF16320 Ribosomal protein L7/L12 dimerisation domain APT55_RS17480 PF00542 Ribosomal protein L7/L12 C-terminal domain APT55_RS17485 PF00466 Ribosomal protein L10 APT55_RS17490 PF00687 Ribosomal protein L1p/L10e family APT55_RS17495 PF00298 Ribosomal protein L11, RNA binding domain APT55_RS17495 PF03946 Ribosomal protein L11, N-terminal domain APT55_RS17500 PF02357 Transcription termination factor nusG APT55_RS17500 PF00467 KOW motif APT55_RS17505 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APT55_RS17515 PF01245 Ribosomal protein L19 APT55_RS17530 PF02361 Cobalt transport protein APT55_RS17535 PF00005 ABC transporter APT55_RS17550 PF00255 Glutathione peroxidase APT55_RS17560 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APT55_RS17565 PF00005 ABC transporter APT55_RS17585 PF05050 Methyltransferase FkbM domain APT55_RS17590 PF01960 ArgJ family APT55_RS17595 PF02934 GatB/GatE catalytic domain APT55_RS17595 PF02637 GatB domain APT55_RS17605 PF00485 Phosphoribulokinase / Uridine kinase family APT55_RS17615 PF00682 HMGL-like APT55_RS17615 PF08502 LeuA allosteric (dimerisation) domain APT55_RS17630 PF01266 FAD dependent oxidoreductase APT55_RS17630 PF05690 Thiazole biosynthesis protein ThiG APT55_RS17635 PF05690 Thiazole biosynthesis protein ThiG APT55_RS17645 PF04820 Tryptophan halogenase APT55_RS17675 PF00266 Aminotransferase class-V APT55_RS17680 PF01434 Peptidase family M41 APT55_RS17680 PF06480 FtsH Extracellular APT55_RS17680 PF17862 AAA+ lid domain APT55_RS17680 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS17685 PF00535 Glycosyl transferase family 2 APT55_RS17690 PF00248 Aldo/keto reductase family APT55_RS17700 PF07085 DRTGG domain APT55_RS17705 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS17715 PF02653 Branched-chain amino acid transport system / permease component APT55_RS17725 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT55_RS17725 PF00005 ABC transporter APT55_RS17730 PF00005 ABC transporter APT55_RS17750 PF00117 Glutamine amidotransferase class-I APT55_RS17770 PF00672 HAMP domain APT55_RS17770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS17770 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS17775 PF02719 Polysaccharide biosynthesis protein APT55_RS17785 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT55_RS17785 PF08479 POTRA domain, ShlB-type APT55_RS17790 PF01063 Amino-transferase class IV APT55_RS17795 PF12697 Alpha/beta hydrolase family APT55_RS17810 PF02913 FAD linked oxidases, C-terminal domain APT55_RS17810 PF01565 FAD binding domain APT55_RS17825 PF01593 Flavin containing amine oxidoreductase APT55_RS17835 PF00857 Isochorismatase family APT55_RS17850 PF00805 Pentapeptide repeats (8 copies) APT55_RS17850 PF00069 Protein kinase domain APT55_RS17855 PF04493 Endonuclease V APT55_RS17875 PF00534 Glycosyl transferases group 1 APT55_RS17880 PF01513 ATP-NAD kinase APT55_RS17885 PF00881 Nitroreductase family APT55_RS17895 PF00391 PEP-utilising enzyme, mobile domain APT55_RS17895 PF02896 PEP-utilising enzyme, TIM barrel domain APT55_RS17895 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT55_RS17900 PF05067 Manganese containing catalase APT55_RS17905 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS17905 PF13823 Alcohol dehydrogenase GroES-associated APT55_RS17905 PF00107 Zinc-binding dehydrogenase APT55_RS17910 PF01223 DNA/RNA non-specific endonuclease APT55_RS17930 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT55_RS17930 PF00355 Rieske [2Fe-2S] domain APT55_RS17940 PF01751 Toprim domain APT55_RS17940 PF00986 DNA gyrase B subunit, carboxyl terminus APT55_RS17940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS17940 PF00204 DNA gyrase B APT55_RS17970 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APT55_RS17970 PF00400 WD domain, G-beta repeat APT55_RS17975 PF00005 ABC transporter APT55_RS17980 PF05175 Methyltransferase small domain APT55_RS17995 PF00733 Asparagine synthase APT55_RS17995 PF13537 Glutamine amidotransferase domain APT55_RS18010 PF00043 Glutathione S-transferase, C-terminal domain APT55_RS18010 PF02798 Glutathione S-transferase, N-terminal domain APT55_RS18015 PF00005 ABC transporter APT55_RS18020 PF05175 Methyltransferase small domain APT55_RS18020 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus APT55_RS18075 PF00072 Response regulator receiver domain APT55_RS18075 PF00196 Bacterial regulatory proteins, luxR family APT55_RS18080 PF01966 HD domain APT55_RS18085 PF00595 PDZ domain APT55_RS18085 PF03572 Peptidase family S41 APT55_RS18090 PF00033 Cytochrome b/b6/petB APT55_RS18095 PF00032 Cytochrome b(C-terminal)/b6/petD APT55_RS18100 PF05685 Putative restriction endonuclease APT55_RS18105 PF02653 Branched-chain amino acid transport system / permease component APT55_RS18110 PF13847 Methyltransferase domain APT55_RS18120 PF00082 Subtilase family APT55_RS18135 PF11016 Protein of unknown function (DUF2854) APT55_RS18140 PF01016 Ribosomal L27 protein APT55_RS18145 PF00829 Ribosomal prokaryotic L21 protein APT55_RS18155 PF04127 DNA / pantothenate metabolism flavoprotein APT55_RS18155 PF02441 Flavoprotein APT55_RS18165 PF00069 Protein kinase domain APT55_RS18165 PF00805 Pentapeptide repeats (8 copies) APT55_RS18175 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS18180 PF02597 ThiS family APT55_RS18185 PF00395 S-layer homology domain APT55_RS18185 PF04966 Carbohydrate-selective porin, OprB family APT55_RS18195 PF00005 ABC transporter APT55_RS18195 PF00664 ABC transporter transmembrane region APT55_RS18205 PF01625 Peptide methionine sulfoxide reductase APT55_RS18210 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APT55_RS18210 PF12706 Beta-lactamase superfamily domain APT55_RS18225 PF03448 MgtE intracellular N domain APT55_RS18225 PF01769 Divalent cation transporter APT55_RS18225 PF00571 CBS domain APT55_RS18230 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT55_RS18230 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT55_RS18235 PF01593 Flavin containing amine oxidoreductase APT55_RS18250 PF00999 Sodium/hydrogen exchanger family APT55_RS18250 PF02080 TrkA-C domain APT55_RS18250 PF02254 TrkA-N domain APT55_RS18255 PF01590 GAF domain APT55_RS18255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS18270 PF13478 XdhC Rossmann domain APT55_RS18270 PF02625 XdhC and CoxI family APT55_RS18285 PF01300 Telomere recombination APT55_RS18305 PF02277 Phosphoribosyltransferase APT55_RS18315 PF01554 MatE APT55_RS18320 PF00692 dUTPase APT55_RS18330 PF02405 Permease MlaE APT55_RS18335 PF01544 CorA-like Mg2+ transporter protein APT55_RS18360 PF00561 alpha/beta hydrolase fold APT55_RS18370 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS18370 PF00101 Ribulose bisphosphate carboxylase, small chain APT55_RS18380 PF00977 Histidine biosynthesis protein APT55_RS18395 PF01434 Peptidase family M41 APT55_RS18395 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS18395 PF17862 AAA+ lid domain APT55_RS18410 PF02040 Arsenical pump membrane protein APT55_RS18445 PF00583 Acetyltransferase (GNAT) family APT55_RS18450 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT55_RS18455 PF01638 HxlR-like helix-turn-helix APT55_RS18475 PF00591 Glycosyl transferase family, a/b domain APT55_RS18475 PF02885 Glycosyl transferase family, helical bundle domain APT55_RS18480 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS18480 PF00563 EAL domain APT55_RS18480 PF13426 PAS domain APT55_RS18495 PF00005 ABC transporter APT55_RS18500 PF09150 Orange carotenoid protein, N-terminal APT55_RS18500 PF02136 Nuclear transport factor 2 (NTF2) domain APT55_RS18505 PF18032 Photoprotection regulator fluorescence recovery protein APT55_RS18515 PF01594 AI-2E family transporter APT55_RS18520 PF12911 N-terminal TM domain of oligopeptide transport permease C APT55_RS18520 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS18525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT55_RS18535 PF00535 Glycosyl transferase family 2 APT55_RS18540 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS18545 PF08402 TOBE domain APT55_RS18545 PF00005 ABC transporter APT55_RS18560 PF09383 NIL domain APT55_RS18565 PF01645 Conserved region in glutamate synthase APT55_RS18565 PF04898 Glutamate synthase central domain APT55_RS18565 PF01493 GXGXG motif APT55_RS18565 PF00310 Glutamine amidotransferases class-II APT55_RS18570 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS18570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT55_RS18575 PF07715 TonB-dependent Receptor Plug Domain APT55_RS18575 PF00593 TonB dependent receptor APT55_RS18580 PF01523 Putative modulator of DNA gyrase APT55_RS18585 PF01523 Putative modulator of DNA gyrase APT55_RS18590 PF01256 Carbohydrate kinase APT55_RS18590 PF03853 YjeF-related protein N-terminus APT55_RS18625 PF02810 SEC-C motif APT55_RS18625 PF07516 SecA Wing and Scaffold domain APT55_RS18625 PF01043 SecA preprotein cross-linking domain APT55_RS18625 PF07517 SecA DEAD-like domain APT55_RS18645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT55_RS18645 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT55_RS18650 PF00149 Calcineurin-like phosphoesterase APT55_RS18660 PF00963 Cohesin domain APT55_RS18660 PF00395 S-layer homology domain APT55_RS18665 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APT55_RS18670 PF03976 Polyphosphate kinase 2 (PPK2) APT55_RS18675 PF00120 Glutamine synthetase, catalytic domain APT55_RS18675 PF18318 Glutamine synthetase C-terminal domain APT55_RS18675 PF12437 Glutamine synthetase type III N terminal APT55_RS18680 PF12706 Beta-lactamase superfamily domain APT55_RS18685 PF00719 Inorganic pyrophosphatase APT55_RS18690 PF00585 C-terminal regulatory domain of Threonine dehydratase APT55_RS18690 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS18700 PF10415 Fumarase C C-terminus APT55_RS18700 PF00206 Lyase APT55_RS18750 PF00664 ABC transporter transmembrane region APT55_RS18750 PF03412 Peptidase C39 family APT55_RS18750 PF00005 ABC transporter APT55_RS18760 PF01207 Dihydrouridine synthase (Dus) APT55_RS18770 PF00005 ABC transporter APT55_RS18795 PF00005 ABC transporter APT55_RS18795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT55_RS18800 PF00902 Sec-independent protein translocase protein (TatC) APT55_RS18805 PF00069 Protein kinase domain APT55_RS18810 PF00107 Zinc-binding dehydrogenase APT55_RS18810 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS18830 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS18835 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS18840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT55_RS18850 PF00873 AcrB/AcrD/AcrF family APT55_RS18855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS18855 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS18855 PF00989 PAS fold APT55_RS18855 PF16736 Single Cache-like APT55_RS18860 PF00248 Aldo/keto reductase family APT55_RS18870 PF13361 UvrD-like helicase C-terminal domain APT55_RS18870 PF00580 UvrD/REP helicase N-terminal domain APT55_RS18875 PF00196 Bacterial regulatory proteins, luxR family APT55_RS18875 PF00072 Response regulator receiver domain APT55_RS18880 PF00156 Phosphoribosyl transferase domain APT55_RS18900 PF03471 Transporter associated domain APT55_RS18900 PF01595 Cyclin M transmembrane N-terminal domain APT55_RS18900 PF00571 CBS domain APT55_RS18905 PF00364 Biotin-requiring enzyme APT55_RS18910 PF09285 Elongation factor P, C-terminal APT55_RS18910 PF08207 Elongation factor P (EF-P) KOW-like domain APT55_RS18910 PF01132 Elongation factor P (EF-P) OB domain APT55_RS18915 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT55_RS18945 PF01266 FAD dependent oxidoreductase APT55_RS18955 PF01808 AICARFT/IMPCHase bienzyme APT55_RS18955 PF02142 MGS-like domain APT55_RS18965 PF09210 Domain of unknown function (DUF1957) APT55_RS18965 PF03065 Glycosyl hydrolase family 57 APT55_RS18975 PF00534 Glycosyl transferases group 1 APT55_RS18975 PF13439 Glycosyltransferase Family 4 APT55_RS18980 PF00072 Response regulator receiver domain APT55_RS18980 PF09308 LuxQ, periplasmic APT55_RS18980 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS18980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS18985 PF01241 Photosystem I psaG / psaK APT55_RS18990 PF00809 Pterin binding enzyme APT55_RS18995 PF01145 SPFH domain / Band 7 family APT55_RS19000 PF00072 Response regulator receiver domain APT55_RS19000 PF12452 Protein of unknown function (DUF3685) APT55_RS19010 PF01475 Ferric uptake regulator family APT55_RS19020 PF00583 Acetyltransferase (GNAT) family APT55_RS19030 PF00196 Bacterial regulatory proteins, luxR family APT55_RS19030 PF00072 Response regulator receiver domain APT55_RS19050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19050 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS19050 PF07689 KaiB domain APT55_RS19055 PF00963 Cohesin domain APT55_RS19055 PF00395 S-layer homology domain APT55_RS19070 PF01008 Initiation factor 2 subunit family APT55_RS19075 PF03454 MoeA C-terminal region (domain IV) APT55_RS19075 PF00994 Probable molybdopterin binding domain APT55_RS19075 PF03453 MoeA N-terminal region (domain I and II) APT55_RS19080 PF00091 Tubulin/FtsZ family, GTPase domain APT55_RS19080 PF12327 FtsZ family, C-terminal domain APT55_RS19110 PF02511 Thymidylate synthase complementing protein APT55_RS19115 PF01618 MotA/TolQ/ExbB proton channel family APT55_RS19120 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS19125 PF12557 Cob(I)alamin adenosyltransferase N terminal APT55_RS19125 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APT55_RS19155 PF06480 FtsH Extracellular APT55_RS19155 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS19155 PF01434 Peptidase family M41 APT55_RS19155 PF17862 AAA+ lid domain APT55_RS19165 PF01138 3' exoribonuclease family, domain 1 APT55_RS19165 PF03725 3' exoribonuclease family, domain 2 APT55_RS19175 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT55_RS19175 PF02811 PHP domain APT55_RS19175 PF14579 Helix-hairpin-helix motif APT55_RS19175 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT55_RS19175 PF01336 OB-fold nucleic acid binding domain APT55_RS19200 PF11862 Domain of unknown function (DUF3382) APT55_RS19200 PF02653 Branched-chain amino acid transport system / permease component APT55_RS19205 PF00005 ABC transporter APT55_RS19205 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT55_RS19220 PF01590 GAF domain APT55_RS19220 PF00563 EAL domain APT55_RS19220 PF00360 Phytochrome region APT55_RS19220 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS19225 PF00756 Putative esterase APT55_RS19230 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS19230 PF00107 Zinc-binding dehydrogenase APT55_RS19250 PF00805 Pentapeptide repeats (8 copies) APT55_RS19255 PF02222 ATP-grasp domain APT55_RS19255 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APT55_RS19260 PF13302 Acetyltransferase (GNAT) domain APT55_RS19270 PF05193 Peptidase M16 inactive domain APT55_RS19270 PF00675 Insulinase (Peptidase family M16) APT55_RS19275 PF00675 Insulinase (Peptidase family M16) APT55_RS19275 PF05193 Peptidase M16 inactive domain APT55_RS19280 PF02911 Formyl transferase, C-terminal domain APT55_RS19280 PF00551 Formyl transferase APT55_RS19300 PF00072 Response regulator receiver domain APT55_RS19300 PF00196 Bacterial regulatory proteins, luxR family APT55_RS19305 PF07730 Histidine kinase APT55_RS19305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19305 PF05384 Sensor protein DegS APT55_RS19310 PF12704 MacB-like periplasmic core domain APT55_RS19310 PF00005 ABC transporter APT55_RS19310 PF02687 FtsX-like permease family APT55_RS19335 PF02608 ABC transporter substrate-binding protein PnrA-like APT55_RS19340 PF01979 Amidohydrolase family APT55_RS19365 PF08448 PAS fold APT55_RS19365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19365 PF08447 PAS fold APT55_RS19370 PF00563 EAL domain APT55_RS19370 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS19370 PF03707 Bacterial signalling protein N terminal repeat APT55_RS19375 PF01914 MarC family integral membrane protein APT55_RS19380 PF08448 PAS fold APT55_RS19380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19380 PF08447 PAS fold APT55_RS19810 PF03551 Transcriptional regulator PadR-like family APT55_RS19835 PF04466 Phage terminase large subunit APT55_RS19835 PF17288 Terminase RNAseH like domain APT55_RS19865 PF04539 Sigma-70 region 3 APT55_RS19865 PF04542 Sigma-70 region 2 APT55_RS19865 PF04545 Sigma-70, region 4 APT55_RS19890 PF01420 Type I restriction modification DNA specificity domain APT55_RS19895 PF01934 Protein of unknown function DUF86 APT55_RS19915 PF02384 N-6 DNA Methylase APT55_RS19925 PF08463 EcoEI R protein C-terminal APT55_RS19925 PF00271 Helicase conserved C-terminal domain APT55_RS19925 PF04851 Type III restriction enzyme, res subunit APT55_RS19925 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APT55_RS19945 PF00149 Calcineurin-like phosphoesterase APT55_RS19945 PF02872 5'-nucleotidase, C-terminal domain APT55_RS19950 PF00881 Nitroreductase family APT55_RS19955 PF13230 Glutamine amidotransferases class-II APT55_RS19960 PF01979 Amidohydrolase family APT55_RS19980 PF00107 Zinc-binding dehydrogenase APT55_RS19980 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS19985 PF05853 beta-keto acid cleavage enzyme APT55_RS19990 PF00561 alpha/beta hydrolase fold APT55_RS20000 PF00171 Aldehyde dehydrogenase family APT55_RS20020 PF01625 Peptide methionine sulfoxide reductase APT55_RS20025 PF02417 Chromate transporter APT55_RS20030 PF00483 Nucleotidyl transferase APT55_RS20030 PF01050 Mannose-6-phosphate isomerase APT55_RS20065 PF01253 Translation initiation factor SUI1 APT55_RS20075 PF00171 Aldehyde dehydrogenase family APT55_RS20090 PF01595 Cyclin M transmembrane N-terminal domain APT55_RS20090 PF00571 CBS domain APT55_RS20090 PF03471 Transporter associated domain APT55_RS20095 PF17757 UvrB interaction domain APT55_RS20095 PF00270 DEAD/DEAH box helicase APT55_RS20095 PF02559 CarD-like/TRCF domain APT55_RS20095 PF00271 Helicase conserved C-terminal domain APT55_RS20095 PF03461 TRCF domain APT55_RS20110 PF01975 Survival protein SurE APT55_RS20115 PF00365 Phosphofructokinase APT55_RS20120 PF01926 50S ribosome-binding GTPase APT55_RS20120 PF07650 KH domain APT55_RS20145 PF04085 rod shape-determining protein MreC APT55_RS20155 PF00436 Single-strand binding protein family APT55_RS20170 PF04542 Sigma-70 region 2 APT55_RS20170 PF08281 Sigma-70, region 4 APT55_RS20180 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS20180 PF00989 PAS fold APT55_RS20180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS20185 PF00106 short chain dehydrogenase APT55_RS20190 PF00549 CoA-ligase APT55_RS20190 PF08442 ATP-grasp domain APT55_RS20195 PF00549 CoA-ligase APT55_RS20195 PF02629 CoA binding domain APT55_RS20200 PF00924 Mechanosensitive ion channel APT55_RS20205 PF01471 Putative peptidoglycan binding domain APT55_RS20205 PF10128 Glucose-6-phosphate dehydrogenase subunit APT55_RS20210 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APT55_RS20210 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APT55_RS20215 PF00923 Transaldolase/Fructose-6-phosphate aldolase APT55_RS20220 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APT55_RS20225 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS20235 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS20255 PF00571 CBS domain APT55_RS20255 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS20260 PF01018 GTP1/OBG APT55_RS20260 PF01926 50S ribosome-binding GTPase APT55_RS20265 PF13360 PQQ-like domain APT55_RS20265 PF13570 PQQ-like domain APT55_RS20265 PF00069 Protein kinase domain APT55_RS20265 PF01011 PQQ enzyme repeat APT55_RS20270 PF05996 Ferredoxin-dependent bilin reductase APT55_RS20280 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS20280 PF00107 Zinc-binding dehydrogenase APT55_RS20290 PF13407 Periplasmic binding protein domain APT55_RS20295 PF00005 ABC transporter APT55_RS20300 PF02653 Branched-chain amino acid transport system / permease component APT55_RS20315 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS20320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT55_RS20320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT55_RS20325 PF00480 ROK family APT55_RS20325 PF01325 Iron dependent repressor, N-terminal DNA binding domain APT55_RS20335 PF04198 Putative sugar-binding domain APT55_RS20345 PF13416 Bacterial extracellular solute-binding protein APT55_RS20350 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS20355 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS20360 PF00005 ABC transporter APT55_RS20360 PF17912 MalK OB fold domain APT55_RS20365 PF08125 Mannitol dehydrogenase C-terminal domain APT55_RS20365 PF01232 Mannitol dehydrogenase Rossmann domain APT55_RS20425 PF05598 Transposase domain (DUF772) APT55_RS20470 PF00892 EamA-like transporter family APT55_RS20480 PF12794 Mechanosensitive ion channel inner membrane domain 1 APT55_RS20480 PF00924 Mechanosensitive ion channel APT55_RS20480 PF12795 Mechanosensitive ion channel porin domain APT55_RS20485 PF00989 PAS fold APT55_RS20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS20485 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS20505 PF09308 LuxQ, periplasmic APT55_RS20505 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS20505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS20505 PF00072 Response regulator receiver domain APT55_RS20510 PF00196 Bacterial regulatory proteins, luxR family APT55_RS20510 PF00072 Response regulator receiver domain APT55_RS20525 PF00534 Glycosyl transferases group 1 APT55_RS20525 PF13439 Glycosyltransferase Family 4 APT55_RS20535 PF04966 Carbohydrate-selective porin, OprB family APT55_RS20535 PF00395 S-layer homology domain APT55_RS20560 PF10458 Valyl tRNA synthetase tRNA binding arm APT55_RS20560 PF00133 tRNA synthetases class I (I, L, M and V) APT55_RS20560 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase APT55_RS20560 PF08264 Anticodon-binding domain of tRNA APT55_RS20570 PF00485 Phosphoribulokinase / Uridine kinase family APT55_RS20575 PF01383 CpcD/allophycocyanin linker domain APT55_RS20575 PF00175 Oxidoreductase NAD-binding domain APT55_RS20585 PF02683 Cytochrome C biogenesis protein transmembrane region APT55_RS20585 PF00578 AhpC/TSA family APT55_RS20585 PF17991 Thioredoxin like C-terminal domain APT55_RS20590 PF01370 NAD dependent epimerase/dehydratase family APT55_RS20595 PF16363 GDP-mannose 4,6 dehydratase APT55_RS20600 PF02397 Bacterial sugar transferase APT55_RS20605 PF13439 Glycosyltransferase Family 4 APT55_RS20605 PF00534 Glycosyl transferases group 1 APT55_RS20625 PF02954 Bacterial regulatory protein, Fis family APT55_RS20625 PF00072 Response regulator receiver domain APT55_RS20625 PF00158 Sigma-54 interaction domain APT55_RS20640 PF00698 Acyl transferase domain APT55_RS20645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT55_RS20645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT55_RS20650 PF02504 Fatty acid synthesis protein APT55_RS20665 PF09364 XFP N-terminal domain APT55_RS20665 PF09363 XFP C-terminal domain APT55_RS20665 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APT55_RS20680 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS20685 PF00313 'Cold-shock' DNA-binding domain APT55_RS20690 PF00936 BMC domain APT55_RS20700 PF02469 Fasciclin domain APT55_RS20725 PF00355 Rieske [2Fe-2S] domain APT55_RS20745 PF00155 Aminotransferase class I and II APT55_RS20770 PF00551 Formyl transferase APT55_RS20785 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS20810 PF03816 Cell envelope-related transcriptional attenuator domain APT55_RS20840 PF13326 Photosystem II Pbs27 APT55_RS20860 PF00502 Phycobilisome protein APT55_RS20865 PF03951 Glutamine synthetase, beta-Grasp domain APT55_RS20865 PF00120 Glutamine synthetase, catalytic domain APT55_RS20870 PF01209 ubiE/COQ5 methyltransferase family APT55_RS20885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APT55_RS20885 PF01409 tRNA synthetases class II core domain (F) APT55_RS20890 PF01975 Survival protein SurE APT55_RS20905 PF10742 Protein of unknown function (DUF2555) APT55_RS20910 PF01078 Magnesium chelatase, subunit ChlI APT55_RS20910 PF17863 AAA lid domain APT55_RS20915 PF13180 PDZ domain APT55_RS20930 PF00311 Phosphoenolpyruvate carboxylase APT55_RS20955 PF00069 Protein kinase domain APT55_RS20965 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS20965 PF00989 PAS fold APT55_RS20965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS20980 PF13676 TIR domain APT55_RS20985 PF01541 GIY-YIG catalytic domain APT55_RS20985 PF08459 UvrC Helix-hairpin-helix N-terminal APT55_RS20985 PF02151 UvrB/uvrC motif APT55_RS20985 PF12826 Helix-hairpin-helix motif APT55_RS21000 PF03109 ABC1 family APT55_RS21010 PF07995 Glucose / Sorbosone dehydrogenase APT55_RS21020 PF13460 NAD(P)H-binding APT55_RS21030 PF03742 PetN APT55_RS21040 PF00909 Ammonium Transporter Family APT55_RS21045 PF00909 Ammonium Transporter Family APT55_RS21050 PF01668 SmpB protein APT55_RS21060 PF17760 UvrA interaction domain APT55_RS21060 PF17755 UvrA DNA-binding domain APT55_RS21065 PF00561 alpha/beta hydrolase fold APT55_RS21075 PF00762 Ferrochelatase APT55_RS21080 PF00395 S-layer homology domain APT55_RS21080 PF04966 Carbohydrate-selective porin, OprB family APT55_RS21085 PF00124 Photosynthetic reaction centre protein APT55_RS21095 PF00005 ABC transporter APT55_RS21115 PF05991 YacP-like NYN domain APT55_RS21120 PF01061 ABC-2 type transporter APT55_RS21120 PF00005 ABC transporter APT55_RS21120 PF00498 FHA domain APT55_RS21130 PF02371 Transposase IS116/IS110/IS902 family APT55_RS21130 PF01548 Transposase APT55_RS21145 PF00696 Amino acid kinase family APT55_RS21165 PF00330 Aconitase family (aconitate hydratase) APT55_RS21185 PF01209 ubiE/COQ5 methyltransferase family APT55_RS21190 PF08447 PAS fold APT55_RS21190 PF08448 PAS fold APT55_RS21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS21195 PF01250 Ribosomal protein S6 APT55_RS21200 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT55_RS21205 PF16166 Chloroplast import apparatus Tic20-like APT55_RS21215 PF00072 Response regulator receiver domain APT55_RS21220 PF00149 Calcineurin-like phosphoesterase APT55_RS21225 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS21225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT55_RS21230 PF09335 SNARE associated Golgi protein APT55_RS21235 PF01126 Heme oxygenase APT55_RS21240 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS21240 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS21250 PF08241 Methyltransferase domain APT55_RS21255 PF01040 UbiA prenyltransferase family APT55_RS21285 PF00216 Bacterial DNA-binding protein APT55_RS21290 PF00210 Ferritin-like domain APT55_RS21305 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS21310 PF02445 Quinolinate synthetase A protein APT55_RS21335 PF00438 S-adenosylmethionine synthetase, N-terminal domain APT55_RS21335 PF02773 S-adenosylmethionine synthetase, C-terminal domain APT55_RS21335 PF02772 S-adenosylmethionine synthetase, central domain APT55_RS21345 PF03109 ABC1 family APT55_RS21355 PF00069 Protein kinase domain APT55_RS21355 PF00805 Pentapeptide repeats (8 copies) APT55_RS21365 PF06838 Methionine gamma-lyase APT55_RS21375 PF00561 alpha/beta hydrolase fold APT55_RS21385 PF00210 Ferritin-like domain APT55_RS21400 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS21405 PF00561 alpha/beta hydrolase fold APT55_RS21410 PF00795 Carbon-nitrogen hydrolase APT55_RS21455 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT55_RS21455 PF14572 Phosphoribosyl synthetase-associated domain APT55_RS21460 PF09424 Yqey-like protein APT55_RS21465 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS21465 PF17871 AAA lid domain APT55_RS21465 PF07724 AAA domain (Cdc48 subfamily) APT55_RS21465 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS21465 PF02861 Clp amino terminal domain, pathogenicity island component APT55_RS21470 PF02514 CobN/Magnesium Chelatase APT55_RS21470 PF11965 Domain of unknown function (DUF3479) APT55_RS21480 PF00654 Voltage gated chloride channel APT55_RS21490 PF13180 PDZ domain APT55_RS21495 PF04298 Putative neutral zinc metallopeptidase APT55_RS21515 PF09367 CpeS-like protein APT55_RS21525 PF17792 ThiD2 family APT55_RS21525 PF02581 Thiamine monophosphate synthase APT55_RS21535 PF01790 Prolipoprotein diacylglyceryl transferase APT55_RS21545 PF13369 Transglutaminase-like superfamily APT55_RS21555 PF05552 Conserved TM helix APT55_RS21560 PF00005 ABC transporter APT55_RS21570 PF00182 Chitinase class I APT55_RS21575 PF02698 DUF218 domain APT55_RS21580 PF02915 Rubrerythrin APT55_RS21590 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS21600 PF12169 DNA polymerase III subunits gamma and tau domain III APT55_RS21600 PF12169 DNA polymerase III subunits gamma and tau domain III APT55_RS21605 PF03717 Penicillin-binding Protein dimerisation domain APT55_RS21605 PF00905 Penicillin binding protein transpeptidase domain APT55_RS21610 PF00155 Aminotransferase class I and II APT55_RS21620 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT55_RS21620 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT55_RS21625 PF00941 FAD binding domain in molybdopterin dehydrogenase APT55_RS21625 PF03450 CO dehydrogenase flavoprotein C-terminal domain APT55_RS21635 PF01494 FAD binding domain APT55_RS21645 PF01546 Peptidase family M20/M25/M40 APT55_RS21680 PF01850 PIN domain APT55_RS21690 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APT55_RS21695 PF13302 Acetyltransferase (GNAT) domain APT55_RS21700 PF10396 GTP-binding protein TrmE N-terminus APT55_RS21700 PF01926 50S ribosome-binding GTPase APT55_RS21700 PF12631 MnmE helical domain APT55_RS21705 PF00113 Enolase, C-terminal TIM barrel domain APT55_RS21705 PF03952 Enolase, N-terminal domain APT55_RS21715 PF00557 Metallopeptidase family M24 APT55_RS21720 PF03702 Anhydro-N-acetylmuramic acid kinase APT55_RS21730 PF00069 Protein kinase domain APT55_RS21745 PF07499 RuvA, C-terminal domain APT55_RS21745 PF01330 RuvA N terminal domain APT55_RS21750 PF05116 Sucrose-6F-phosphate phosphohydrolase APT55_RS21765 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS21770 PF00085 Thioredoxin APT55_RS21785 PF00174 Oxidoreductase molybdopterin binding domain APT55_RS21800 PF06574 FAD synthetase APT55_RS21800 PF01687 Riboflavin kinase APT55_RS21805 PF02638 Glycosyl hydrolase-like 10 APT55_RS21815 PF00576 HIUase/Transthyretin family APT55_RS21830 PF03466 LysR substrate binding domain APT55_RS21830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS21840 PF04997 RNA polymerase Rpb1, domain 1 APT55_RS21840 PF04998 RNA polymerase Rpb1, domain 5 APT55_RS21840 PF05000 RNA polymerase Rpb1, domain 4 APT55_RS21840 PF04983 RNA polymerase Rpb1, domain 3 APT55_RS21840 PF00623 RNA polymerase Rpb1, domain 2 APT55_RS21870 PF03793 PASTA domain APT55_RS21870 PF00069 Protein kinase domain APT55_RS21880 PF00085 Thioredoxin APT55_RS21890 PF00085 Thioredoxin APT55_RS21895 PF00155 Aminotransferase class I and II APT55_RS21915 PF01627 Hpt domain APT55_RS21915 PF00486 Transcriptional regulatory protein, C terminal APT55_RS21915 PF00072 Response regulator receiver domain APT55_RS21920 PF13493 Domain of unknown function (DUF4118) APT55_RS21920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS21920 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS21920 PF02702 Osmosensitive K+ channel His kinase sensor domain APT55_RS21925 PF00551 Formyl transferase APT55_RS21925 PF01842 ACT domain APT55_RS21945 PF01694 Rhomboid family APT55_RS21960 PF00795 Carbon-nitrogen hydrolase APT55_RS21965 PF01062 Bestrophin, RFP-TM, chloride channel APT55_RS21985 PF01594 AI-2E family transporter APT55_RS22015 PF02463 RecF/RecN/SMC N terminal domain APT55_RS22020 PF00118 TCP-1/cpn60 chaperonin family APT55_RS22025 PF00166 Chaperonin 10 Kd subunit APT55_RS22035 PF00427 Phycobilisome Linker polypeptide APT55_RS22040 PF00502 Phycobilisome protein APT55_RS22045 PF00502 Phycobilisome protein APT55_RS22050 PF01383 CpcD/allophycocyanin linker domain APT55_RS22050 PF00427 Phycobilisome Linker polypeptide APT55_RS22055 PF00427 Phycobilisome Linker polypeptide APT55_RS22055 PF01383 CpcD/allophycocyanin linker domain APT55_RS22060 PF05067 Manganese containing catalase APT55_RS22075 PF07728 AAA domain (dynein-related subfamily) APT55_RS22085 PF05762 VWA domain containing CoxE-like protein APT55_RS22090 PF04434 SWIM zinc finger APT55_RS22095 PF01136 Peptidase family U32 APT55_RS22095 PF12392 Collagenase APT55_RS22100 PF02308 MgtC family APT55_RS22125 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APT55_RS22125 PF00400 WD domain, G-beta repeat APT55_RS22135 PF03150 Di-haem cytochrome c peroxidase APT55_RS22140 PF04966 Carbohydrate-selective porin, OprB family APT55_RS22140 PF00395 S-layer homology domain APT55_RS22145 PF07729 FCD domain APT55_RS22145 PF00392 Bacterial regulatory proteins, gntR family APT55_RS22150 PF09084 NMT1/THI5 like APT55_RS22155 PF00005 ABC transporter APT55_RS22165 PF01169 Uncharacterized protein family UPF0016 APT55_RS22175 PF04226 Transglycosylase associated protein APT55_RS22185 PF08031 Berberine and berberine like APT55_RS22185 PF01565 FAD binding domain APT55_RS22190 PF00072 Response regulator receiver domain APT55_RS22190 PF00486 Transcriptional regulatory protein, C terminal APT55_RS22195 PF13426 PAS domain APT55_RS22195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS22195 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS22195 PF00672 HAMP domain APT55_RS22205 PF00891 O-methyltransferase domain APT55_RS22215 PF00072 Response regulator receiver domain APT55_RS22215 PF09308 LuxQ, periplasmic APT55_RS22215 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS22215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS22220 PF01627 Hpt domain APT55_RS22220 PF00486 Transcriptional regulatory protein, C terminal APT55_RS22220 PF00072 Response regulator receiver domain APT55_RS22230 PF13359 DDE superfamily endonuclease APT55_RS22230 PF13613 Helix-turn-helix of DDE superfamily endonuclease APT55_RS22260 PF01343 Peptidase family S49 APT55_RS22270 PF01209 ubiE/COQ5 methyltransferase family APT55_RS22275 PF00535 Glycosyl transferase family 2 APT55_RS22280 PF01773 Na+ dependent nucleoside transporter N-terminus APT55_RS22280 PF07662 Na+ dependent nucleoside transporter C-terminus APT55_RS22280 PF07670 Nucleoside recognition APT55_RS22290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS22290 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT55_RS22305 PF01383 CpcD/allophycocyanin linker domain APT55_RS22310 PF00502 Phycobilisome protein APT55_RS22315 PF00502 Phycobilisome protein APT55_RS22330 PF00012 Hsp70 protein APT55_RS22340 PF00155 Aminotransferase class I and II APT55_RS22345 PF01809 Putative membrane protein insertion efficiency factor APT55_RS22350 PF01427 D-ala-D-ala dipeptidase APT55_RS22355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT55_RS22360 PF08245 Mur ligase middle domain APT55_RS22360 PF01225 Mur ligase family, catalytic domain APT55_RS22360 PF02875 Mur ligase family, glutamate ligase domain APT55_RS22370 PF00106 short chain dehydrogenase APT55_RS22375 PF12320 Type 5 capsule protein repressor C-terminal domain APT55_RS22375 PF00149 Calcineurin-like phosphoesterase APT55_RS22390 PF00072 Response regulator receiver domain APT55_RS22390 PF00486 Transcriptional regulatory protein, C terminal APT55_RS22395 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS22400 PF00989 PAS fold APT55_RS22400 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS22400 PF00672 HAMP domain APT55_RS22400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS22410 PF00395 S-layer homology domain APT55_RS22410 PF04966 Carbohydrate-selective porin, OprB family APT55_RS22415 PF00155 Aminotransferase class I and II APT55_RS22435 PF01116 Fructose-bisphosphate aldolase class-II APT55_RS22445 PF00440 Bacterial regulatory proteins, tetR family APT55_RS22450 PF01807 CHC2 zinc finger APT55_RS22450 PF08275 DNA primase catalytic core, N-terminal domain APT55_RS22450 PF10410 DnaB-helicase binding domain of primase APT55_RS22480 PF04389 Peptidase family M28 APT55_RS22485 PF03061 Thioesterase superfamily APT55_RS22490 PF00582 Universal stress protein family APT55_RS22495 PF13533 Biotin-lipoyl like APT55_RS22495 PF13533 Biotin-lipoyl like APT55_RS22510 PF00300 Histidine phosphatase superfamily (branch 1) APT55_RS22530 PF08865 Domain of unknown function (DUF1830) APT55_RS22540 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS22550 PF02673 Bacitracin resistance protein BacA APT55_RS22575 PF02780 Transketolase, C-terminal domain APT55_RS22575 PF00456 Transketolase, thiamine diphosphate binding domain APT55_RS22575 PF02779 Transketolase, pyrimidine binding domain APT55_RS22585 PF02801 Beta-ketoacyl synthase, C-terminal domain APT55_RS22585 PF00109 Beta-ketoacyl synthase, N-terminal domain APT55_RS22590 PF00550 Phosphopantetheine attachment site APT55_RS22595 PF02754 Cysteine-rich domain APT55_RS22600 PF00069 Protein kinase domain APT55_RS22605 PF12849 PBP superfamily domain APT55_RS22610 PF02702 Osmosensitive K+ channel His kinase sensor domain APT55_RS22615 PF03099 Biotin/lipoate A/B protein ligase family APT55_RS22620 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APT55_RS22620 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APT55_RS22625 PF00679 Elongation factor G C-terminus APT55_RS22625 PF03764 Elongation factor G, domain IV APT55_RS22625 PF00009 Elongation factor Tu GTP binding domain APT55_RS22625 PF14492 Elongation Factor G, domain II APT55_RS22630 PF05598 Transposase domain (DUF772) APT55_RS22655 PF05175 Methyltransferase small domain APT55_RS22670 PF17941 Polyphosphate kinase C-terminal domain 1 APT55_RS22670 PF13090 Polyphosphate kinase C-terminal domain 2 APT55_RS22670 PF13089 Polyphosphate kinase N-terminal domain APT55_RS22670 PF02503 Polyphosphate kinase middle domain APT55_RS22690 PF01169 Uncharacterized protein family UPF0016 APT55_RS22695 PF01169 Uncharacterized protein family UPF0016 APT55_RS22715 PF01339 CheB methylesterase APT55_RS22715 PF00072 Response regulator receiver domain APT55_RS22720 PF00140 Sigma-70 factor, region 1.2 APT55_RS22720 PF04542 Sigma-70 region 2 APT55_RS22720 PF04545 Sigma-70, region 4 APT55_RS22720 PF03979 Sigma-70 factor, region 1.1 APT55_RS22720 PF04539 Sigma-70 region 3 APT55_RS22730 PF11805 Protein of unknown function (DUF3326) APT55_RS22735 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS22750 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APT55_RS22750 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APT55_RS22755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT55_RS22755 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT55_RS22760 PF01730 UreF APT55_RS22765 PF05194 UreE urease accessory protein, C-terminal domain APT55_RS22765 PF02814 UreE urease accessory protein, N-terminal domain APT55_RS22775 PF00035 Double-stranded RNA binding motif APT55_RS22775 PF00636 Ribonuclease III domain APT55_RS22800 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APT55_RS22800 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain APT55_RS22805 PF01467 Cytidylyltransferase-like APT55_RS22845 PF00849 RNA pseudouridylate synthase APT55_RS22860 PF03091 CutA1 divalent ion tolerance protein APT55_RS22870 PF01648 4'-phosphopantetheinyl transferase superfamily APT55_RS22875 PF00128 Alpha amylase, catalytic domain APT55_RS22875 PF11941 Domain of unknown function (DUF3459) APT55_RS22880 PF00312 Ribosomal protein S15 APT55_RS22890 PF18152 DAHP synthase ferredoxin-like domain APT55_RS22890 PF00793 DAHP synthetase I family APT55_RS22905 PF00072 Response regulator receiver domain APT55_RS22905 PF00196 Bacterial regulatory proteins, luxR family APT55_RS22915 PF00005 ABC transporter APT55_RS22915 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT55_RS22920 PF00005 ABC transporter APT55_RS22930 PF02653 Branched-chain amino acid transport system / permease component APT55_RS22935 PF11862 Domain of unknown function (DUF3382) APT55_RS22935 PF02653 Branched-chain amino acid transport system / permease component APT55_RS22940 PF01145 SPFH domain / Band 7 family APT55_RS22940 PF16200 C-terminal region of band_7 APT55_RS22960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT55_RS22960 PF00005 ABC transporter APT55_RS22970 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS22970 PF09308 LuxQ, periplasmic APT55_RS22970 PF00072 Response regulator receiver domain APT55_RS22970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS22975 PF12697 Alpha/beta hydrolase family APT55_RS22980 PF00459 Inositol monophosphatase family APT55_RS22990 PF08421 Putative zinc binding domain APT55_RS22990 PF08484 C-methyltransferase C-terminal domain APT55_RS22995 PF16363 GDP-mannose 4,6 dehydratase APT55_RS23000 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT55_RS23000 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT55_RS23000 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT55_RS23010 PF09940 Domain of unknown function (DUF2172) APT55_RS23010 PF16221 winged helix-turn-helix APT55_RS23010 PF16254 Domain of unknown function (DUF4910) APT55_RS23015 PF00483 Nucleotidyl transferase APT55_RS23025 PF02541 Ppx/GppA phosphatase family APT55_RS23030 PF01040 UbiA prenyltransferase family APT55_RS23045 PF04539 Sigma-70 region 3 APT55_RS23045 PF04542 Sigma-70 region 2 APT55_RS23045 PF04545 Sigma-70, region 4 APT55_RS23050 PF01716 Manganese-stabilising protein / photosystem II polypeptide APT55_RS23060 PF05151 Photosystem II reaction centre M protein (PsbM) APT55_RS23070 PF00421 Photosystem II protein APT55_RS23075 PF01405 Photosystem II reaction centre T protein APT55_RS23080 PF00583 Acetyltransferase (GNAT) family APT55_RS23085 PF01384 Phosphate transporter family APT55_RS23090 PF00892 EamA-like transporter family APT55_RS23105 PF01595 Cyclin M transmembrane N-terminal domain APT55_RS23105 PF03471 Transporter associated domain APT55_RS23105 PF00571 CBS domain APT55_RS23135 PF02350 UDP-N-acetylglucosamine 2-epimerase APT55_RS23150 PF00270 DEAD/DEAH box helicase APT55_RS23150 PF00570 HRDC domain APT55_RS23150 PF00271 Helicase conserved C-terminal domain APT55_RS23150 PF16124 RecQ zinc-binding APT55_RS23150 PF09382 RQC domain APT55_RS23165 PF01965 DJ-1/PfpI family APT55_RS23175 PF13823 Alcohol dehydrogenase GroES-associated APT55_RS23175 PF00107 Zinc-binding dehydrogenase APT55_RS23175 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS23185 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS23185 PF13823 Alcohol dehydrogenase GroES-associated APT55_RS23185 PF00107 Zinc-binding dehydrogenase APT55_RS23190 PF00484 Carbonic anhydrase APT55_RS23195 PF02926 THUMP domain APT55_RS23195 PF01170 Putative RNA methylase family UPF0020 APT55_RS23200 PF04101 Glycosyltransferase family 28 C-terminal domain APT55_RS23200 PF03033 Glycosyltransferase family 28 N-terminal domain APT55_RS23215 PF01594 AI-2E family transporter APT55_RS23240 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT55_RS23245 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APT55_RS23250 PF13237 4Fe-4S dicluster domain APT55_RS23255 PF00146 NADH dehydrogenase APT55_RS23260 PF00285 Citrate synthase, C-terminal domain APT55_RS23270 PF07969 Amidohydrolase family APT55_RS23280 PF01979 Amidohydrolase family APT55_RS23285 PF08323 Starch synthase catalytic domain APT55_RS23285 PF00534 Glycosyl transferases group 1 APT55_RS23340 PF13417 Glutathione S-transferase, N-terminal domain APT55_RS23345 PF02463 RecF/RecN/SMC N terminal domain APT55_RS23350 PF00067 Cytochrome P450 APT55_RS23360 PF00689 Cation transporting ATPase, C-terminus APT55_RS23360 PF00690 Cation transporter/ATPase, N-terminus APT55_RS23385 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS23410 PF00873 AcrB/AcrD/AcrF family APT55_RS23430 PF00486 Transcriptional regulatory protein, C terminal APT55_RS23430 PF00072 Response regulator receiver domain APT55_RS23435 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS23435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS23440 PF13508 Acetyltransferase (GNAT) domain APT55_RS23450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT55_RS23450 PF02896 PEP-utilising enzyme, TIM barrel domain APT55_RS23450 PF00391 PEP-utilising enzyme, mobile domain APT55_RS23455 PF12911 N-terminal TM domain of oligopeptide transport permease C APT55_RS23455 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS23465 PF13735 tRNA nucleotidyltransferase domain 2 putative APT55_RS23465 PF12627 Probable RNA and SrmB- binding site of polymerase A APT55_RS23465 PF01743 Poly A polymerase head domain APT55_RS23480 PF00534 Glycosyl transferases group 1 APT55_RS23480 PF13439 Glycosyltransferase Family 4 APT55_RS23495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS23495 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS23495 PF00989 PAS fold APT55_RS23500 PF16416 ARM-like repeat domain, GUN4-N terminal APT55_RS23500 PF05419 GUN4-like APT55_RS23505 PF00486 Transcriptional regulatory protein, C terminal APT55_RS23505 PF00072 Response regulator receiver domain APT55_RS23510 PF00180 Isocitrate/isopropylmalate dehydrogenase APT55_RS23520 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS23520 PF00072 Response regulator receiver domain APT55_RS23525 PF00072 Response regulator receiver domain APT55_RS23525 PF00486 Transcriptional regulatory protein, C terminal APT55_RS23535 PF01434 Peptidase family M41 APT55_RS23535 PF17862 AAA+ lid domain APT55_RS23535 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS23540 PF14437 MafB19-like deaminase APT55_RS23545 PF00571 CBS domain APT55_RS23545 PF00478 IMP dehydrogenase / GMP reductase domain APT55_RS23565 PF09587 Bacterial capsule synthesis protein PGA_cap APT55_RS23585 PF00069 Protein kinase domain APT55_RS23600 PF13439 Glycosyltransferase Family 4 APT55_RS23620 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus APT55_RS23625 PF01979 Amidohydrolase family APT55_RS23630 PF00731 AIR carboxylase APT55_RS23635 PF01040 UbiA prenyltransferase family APT55_RS23645 PF13193 AMP-binding enzyme C-terminal domain APT55_RS23645 PF00501 AMP-binding enzyme APT55_RS23660 PF00171 Aldehyde dehydrogenase family APT55_RS23665 PF00005 ABC transporter APT55_RS23665 PF01061 ABC-2 type transporter APT55_RS23665 PF00498 FHA domain APT55_RS23675 PF06470 SMC proteins Flexible Hinge Domain APT55_RS23675 PF02463 RecF/RecN/SMC N terminal domain APT55_RS23695 PF01555 DNA methylase APT55_RS23710 PF03652 Holliday junction resolvase APT55_RS23715 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS23715 PF00989 PAS fold APT55_RS23715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS23720 PF11378 Protein of unknown function (DUF3181) APT55_RS23730 PF00591 Glycosyl transferase family, a/b domain APT55_RS23730 PF02885 Glycosyl transferase family, helical bundle domain APT55_RS23735 PF03466 LysR substrate binding domain APT55_RS23735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS23740 PF11490 DNA polymerase III polC-type N-terminus II APT55_RS23740 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT55_RS23740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT55_RS23740 PF14579 Helix-hairpin-helix motif APT55_RS23740 PF02811 PHP domain APT55_RS23740 PF00929 Exonuclease APT55_RS23745 PF00271 Helicase conserved C-terminal domain APT55_RS23745 PF00270 DEAD/DEAH box helicase APT55_RS23750 PF04055 Radical SAM superfamily APT55_RS23750 PF18693 TRAM domain APT55_RS23750 PF00919 Uncharacterized protein family UPF0004 APT55_RS23755 PF13533 Biotin-lipoyl like APT55_RS23780 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT55_RS23780 PF14159 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase APT55_RS23795 PF06055 Exopolysaccharide synthesis, ExoD APT55_RS23800 PF01479 S4 domain APT55_RS23800 PF01728 FtsJ-like methyltransferase APT55_RS23810 PF09367 CpeS-like protein APT55_RS23815 PF00005 ABC transporter APT55_RS23835 PF03819 MazG nucleotide pyrophosphohydrolase domain APT55_RS23855 PF00596 Class II Aldolase and Adducin N-terminal domain APT55_RS23860 PF00202 Aminotransferase class-III APT55_RS23865 PF00830 Ribosomal L28 family APT55_RS23885 PF14245 Type IV pilin PilA APT55_RS23885 PF07963 Prokaryotic N-terminal methylation motif APT55_RS23895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT55_RS23895 PF02806 Alpha amylase, C-terminal all-beta domain APT55_RS23895 PF00128 Alpha amylase, catalytic domain APT55_RS23900 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) APT55_RS23950 PF12697 Alpha/beta hydrolase family APT55_RS23960 PF04474 Protein of unknown function (DUF554) APT55_RS23970 PF00202 Aminotransferase class-III APT55_RS23975 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT55_RS23975 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT55_RS23990 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT55_RS23995 PF01434 Peptidase family M41 APT55_RS23995 PF06480 FtsH Extracellular APT55_RS23995 PF17862 AAA+ lid domain APT55_RS23995 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS24040 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain APT55_RS24045 PF01458 Uncharacterized protein family (UPF0051) APT55_RS24050 PF00005 ABC transporter APT55_RS24055 PF01458 Uncharacterized protein family (UPF0051) APT55_RS24060 PF00266 Aminotransferase class-V APT55_RS24075 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system APT55_RS24080 PF00155 Aminotransferase class I and II APT55_RS24085 PF01795 MraW methylase family APT55_RS24090 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT55_RS24105 PF03330 Lytic transglycolase APT55_RS24110 PF02769 AIR synthase related protein, C-terminal domain APT55_RS24110 PF00586 AIR synthase related protein, N-terminal domain APT55_RS24115 PF00398 Ribosomal RNA adenine dimethylase APT55_RS24125 PF08544 GHMP kinases C terminal APT55_RS24125 PF00288 GHMP kinases N terminal domain APT55_RS24160 PF02355 Protein export membrane protein APT55_RS24160 PF07549 SecD/SecF GG Motif APT55_RS24165 PF07549 SecD/SecF GG Motif APT55_RS24165 PF02355 Protein export membrane protein APT55_RS24180 PF02780 Transketolase, C-terminal domain APT55_RS24180 PF02779 Transketolase, pyrimidine binding domain APT55_RS24180 PF00364 Biotin-requiring enzyme APT55_RS24185 PF00266 Aminotransferase class-V APT55_RS24190 PF14251 Domain of unknown function (DUF4346) APT55_RS24200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS24200 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS24200 PF00989 PAS fold APT55_RS24210 PF01966 HD domain APT55_RS24210 PF07697 7TM-HD extracellular APT55_RS24210 PF07698 7TM receptor with intracellular HD hydrolase APT55_RS24215 PF13545 Crp-like helix-turn-helix domain APT55_RS24220 PF08241 Methyltransferase domain APT55_RS24230 PF00133 tRNA synthetases class I (I, L, M and V) APT55_RS24230 PF08264 Anticodon-binding domain of tRNA APT55_RS24230 PF09334 tRNA synthetases class I (M) APT55_RS24245 PF00223 Photosystem I psaA/psaB protein APT55_RS24250 PF13545 Crp-like helix-turn-helix domain APT55_RS24255 PF13614 AAA domain APT55_RS24265 PF09383 NIL domain APT55_RS24265 PF00005 ABC transporter APT55_RS24275 PF00072 Response regulator receiver domain APT55_RS24275 PF00486 Transcriptional regulatory protein, C terminal APT55_RS24280 PF01740 STAS domain APT55_RS24285 PF02397 Bacterial sugar transferase APT55_RS24295 PF00694 Aconitase C-terminal domain APT55_RS24300 PF06418 CTP synthase N-terminus APT55_RS24300 PF00117 Glutamine amidotransferase class-I APT55_RS24305 PF08239 Bacterial SH3 domain APT55_RS24305 PF01520 N-acetylmuramoyl-L-alanine amidase APT55_RS24315 PF01368 DHH family APT55_RS24315 PF17768 RecJ OB domain APT55_RS24315 PF10141 Single-strand DNA-specific exonuclease, C terminal domain APT55_RS24315 PF02272 DHHA1 domain APT55_RS24345 PF00873 AcrB/AcrD/AcrF family APT55_RS24350 PF01370 NAD dependent epimerase/dehydratase family APT55_RS24355 PF04055 Radical SAM superfamily APT55_RS24355 PF06463 Molybdenum Cofactor Synthesis C APT55_RS24360 PF00069 Protein kinase domain APT55_RS24360 PF08239 Bacterial SH3 domain APT55_RS24365 PF00069 Protein kinase domain APT55_RS24370 PF04151 Bacterial pre-peptidase C-terminal domain APT55_RS24370 PF00082 Subtilase family APT55_RS24375 PF01501 Glycosyl transferase family 8 APT55_RS24375 PF00535 Glycosyl transferase family 2 APT55_RS24395 PF00535 Glycosyl transferase family 2 APT55_RS24410 PF14524 Wzt C-terminal domain APT55_RS24410 PF00005 ABC transporter APT55_RS24420 PF00005 ABC transporter APT55_RS24425 PF00072 Response regulator receiver domain APT55_RS24425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS24425 PF01627 Hpt domain APT55_RS24425 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS24425 PF00672 HAMP domain APT55_RS24425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS24435 PF01641 SelR domain APT55_RS24445 PF00072 Response regulator receiver domain APT55_RS24450 PF17149 Periplasmic sensor domain found in signal transduction proteins APT55_RS24450 PF00072 Response regulator receiver domain APT55_RS24450 PF01627 Hpt domain APT55_RS24450 PF00672 HAMP domain APT55_RS24450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS24450 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS24460 PF00436 Single-strand binding protein family APT55_RS24465 PF00483 Nucleotidyl transferase APT55_RS24480 PF00294 pfkB family carbohydrate kinase APT55_RS24485 PF00072 Response regulator receiver domain APT55_RS24490 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT55_RS24490 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT55_RS24520 PF00931 NB-ARC domain APT55_RS24520 PF00486 Transcriptional regulatory protein, C terminal APT55_RS24520 PF03704 Bacterial transcriptional activator domain APT55_RS24545 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT55_RS24545 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS24555 PF00300 Histidine phosphatase superfamily (branch 1) APT55_RS24560 PF10664 Cyanobacterial and plastid NDH-1 subunit M APT55_RS24585 PF03717 Penicillin-binding Protein dimerisation domain APT55_RS24585 PF00905 Penicillin binding protein transpeptidase domain APT55_RS24600 PF01180 Dihydroorotate dehydrogenase APT55_RS24605 PF00361 Proton-conducting membrane transporter APT55_RS24610 PF00437 Type II/IV secretion system protein APT55_RS24615 PF00535 Glycosyl transferase family 2 APT55_RS24635 PF01507 Phosphoadenosine phosphosulfate reductase family APT55_RS24645 PF00873 AcrB/AcrD/AcrF family APT55_RS24650 PF00196 Bacterial regulatory proteins, luxR family APT55_RS24650 PF03472 Autoinducer binding domain APT55_RS24655 PF01979 Amidohydrolase family APT55_RS24655 PF00449 Urease alpha-subunit, N-terminal domain APT55_RS24665 PF02529 Cytochrome B6-F complex subunit 5 APT55_RS24680 PF08502 LeuA allosteric (dimerisation) domain APT55_RS24680 PF00682 HMGL-like APT55_RS24690 PF00069 Protein kinase domain APT55_RS24705 PF00297 Ribosomal protein L3 APT55_RS24710 PF00573 Ribosomal protein L4/L1 family APT55_RS24715 PF00276 Ribosomal protein L23 APT55_RS24720 PF00181 Ribosomal Proteins L2, RNA binding domain APT55_RS24720 PF03947 Ribosomal Proteins L2, C-terminal domain APT55_RS24725 PF00203 Ribosomal protein S19 APT55_RS24730 PF00237 Ribosomal protein L22p/L17e APT55_RS24735 PF07650 KH domain APT55_RS24735 PF00189 Ribosomal protein S3, C-terminal domain APT55_RS24740 PF00252 Ribosomal protein L16p/L10e APT55_RS24745 PF00831 Ribosomal L29 protein APT55_RS24750 PF00366 Ribosomal protein S17 APT55_RS24755 PF00238 Ribosomal protein L14p/L23e APT55_RS24760 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APT55_RS24760 PF00467 KOW motif APT55_RS24765 PF00673 ribosomal L5P family C-terminus APT55_RS24765 PF00281 Ribosomal protein L5 APT55_RS24770 PF00410 Ribosomal protein S8 APT55_RS24775 PF00347 Ribosomal protein L6 APT55_RS24780 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APT55_RS24785 PF00333 Ribosomal protein S5, N-terminal domain APT55_RS24785 PF03719 Ribosomal protein S5, C-terminal domain APT55_RS24790 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APT55_RS24810 PF01850 PIN domain APT55_RS24825 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APT55_RS24860 PF05731 TROVE domain APT55_RS24865 PF01926 50S ribosome-binding GTPase APT55_RS24865 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT55_RS24985 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS24985 PF00107 Zinc-binding dehydrogenase APT55_RS24995 PF00593 TonB dependent receptor APT55_RS24995 PF07715 TonB-dependent Receptor Plug Domain APT55_RS25000 PF01497 Periplasmic binding protein APT55_RS25005 PF00005 ABC transporter APT55_RS25010 PF01032 FecCD transport family APT55_RS25015 PF00421 Photosystem II protein APT55_RS25030 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS25035 PF01618 MotA/TolQ/ExbB proton channel family APT55_RS25045 PF01032 FecCD transport family APT55_RS25050 PF01497 Periplasmic binding protein APT55_RS25055 PF12833 Helix-turn-helix domain APT55_RS25060 PF07715 TonB-dependent Receptor Plug Domain APT55_RS25060 PF00593 TonB dependent receptor APT55_RS25065 PF00005 ABC transporter APT55_RS25070 PF00005 ABC transporter APT55_RS25070 PF00664 ABC transporter transmembrane region APT55_RS25075 PF12833 Helix-turn-helix domain APT55_RS25080 PF07715 TonB-dependent Receptor Plug Domain APT55_RS25080 PF00593 TonB dependent receptor APT55_RS25090 PF07690 Major Facilitator Superfamily APT55_RS25095 PF01497 Periplasmic binding protein APT55_RS25100 PF00593 TonB dependent receptor APT55_RS25100 PF07715 TonB-dependent Receptor Plug Domain APT55_RS25105 PF12833 Helix-turn-helix domain APT55_RS25110 PF00664 ABC transporter transmembrane region APT55_RS25110 PF00005 ABC transporter APT55_RS25120 PF01497 Periplasmic binding protein APT55_RS25125 PF01032 FecCD transport family APT55_RS25130 PF01032 FecCD transport family APT55_RS25170 PF02798 Glutathione S-transferase, N-terminal domain APT55_RS25185 PF00400 WD domain, G-beta repeat APT55_RS25240 PF00925 GTP cyclohydrolase II APT55_RS25240 PF08719 Domain of unknown function (DUF1768) APT55_RS25260 PF13673 Acetyltransferase (GNAT) domain APT55_RS25280 PF01555 DNA methylase APT55_RS25285 PF02657 Fe-S metabolism associated domain APT55_RS25290 PF00188 Cysteine-rich secretory protein family APT55_RS25295 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APT55_RS25295 PF00476 DNA polymerase family A APT55_RS25295 PF01612 3'-5' exonuclease APT55_RS25295 PF01367 5'-3' exonuclease, C-terminal SAM fold APT55_RS25305 PF14332 Domain of unknown function (DUF4388) APT55_RS25305 PF00072 Response regulator receiver domain APT55_RS25310 PF00072 Response regulator receiver domain APT55_RS25320 PF01590 GAF domain APT55_RS25320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS25325 PF01584 CheW-like domain APT55_RS25325 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS25325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS25325 PF01627 Hpt domain APT55_RS25325 PF00072 Response regulator receiver domain APT55_RS25335 PF08534 Redoxin APT55_RS25335 PF00462 Glutaredoxin APT55_RS25345 PF00085 Thioredoxin APT55_RS25355 PF06055 Exopolysaccharide synthesis, ExoD APT55_RS25360 PF00395 S-layer homology domain APT55_RS25360 PF00963 Cohesin domain APT55_RS25365 PF01595 Cyclin M transmembrane N-terminal domain APT55_RS25365 PF03471 Transporter associated domain APT55_RS25365 PF00571 CBS domain APT55_RS25375 PF00459 Inositol monophosphatase family APT55_RS25395 PF01593 Flavin containing amine oxidoreductase APT55_RS25400 PF00326 Prolyl oligopeptidase family APT55_RS25400 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APT55_RS25405 PF03793 PASTA domain APT55_RS25405 PF00069 Protein kinase domain APT55_RS25410 PF05145 Transition state regulatory protein AbrB APT55_RS25420 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS25425 PF00005 ABC transporter APT55_RS25430 PF03466 LysR substrate binding domain APT55_RS25430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS25440 PF00890 FAD binding domain APT55_RS25455 PF10609 NUBPL iron-transfer P-loop NTPase APT55_RS25455 PF01883 Iron-sulfur cluster assembly protein APT55_RS25460 PF03601 Conserved hypothetical protein 698 APT55_RS25470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS25505 PF13439 Glycosyltransferase Family 4 APT55_RS25505 PF00534 Glycosyl transferases group 1 APT55_RS25510 PF13439 Glycosyltransferase Family 4 APT55_RS25510 PF00534 Glycosyl transferases group 1 APT55_RS25525 PF14667 Polysaccharide biosynthesis C-terminal domain APT55_RS25530 PF00535 Glycosyl transferase family 2 APT55_RS25535 PF03808 Glycosyl transferase WecB/TagA/CpsF family APT55_RS25545 PF02403 Seryl-tRNA synthetase N-terminal domain APT55_RS25545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT55_RS25550 PF01612 3'-5' exonuclease APT55_RS25550 PF00476 DNA polymerase family A APT55_RS25565 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase APT55_RS25570 PF00437 Type II/IV secretion system protein APT55_RS25585 PF04551 GcpE protein APT55_RS25610 PF01380 SIS domain APT55_RS25620 PF07690 Major Facilitator Superfamily APT55_RS25625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT55_RS25625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT55_RS25625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT55_RS25625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT55_RS25635 PF10369 Small subunit of acetolactate synthase APT55_RS25640 PF07691 PA14 domain APT55_RS25640 PF12791 Anti-sigma factor N-terminus APT55_RS25645 PF01713 Smr domain APT55_RS25645 PF00488 MutS domain V APT55_RS25650 PF08448 PAS fold APT55_RS25650 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS25650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS25650 PF00672 HAMP domain APT55_RS25650 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB APT55_RS25655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS25655 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS25660 PF11941 Domain of unknown function (DUF3459) APT55_RS25660 PF00128 Alpha amylase, catalytic domain APT55_RS25665 PF00128 Alpha amylase, catalytic domain APT55_RS25670 PF03099 Biotin/lipoate A/B protein ligase family APT55_RS25675 PF00180 Isocitrate/isopropylmalate dehydrogenase APT55_RS25680 PF01297 Zinc-uptake complex component A periplasmic APT55_RS25690 PF02654 Cobalamin-5-phosphate synthase APT55_RS25695 PF02254 TrkA-N domain APT55_RS25695 PF07885 Ion channel APT55_RS25700 PF00483 Nucleotidyl transferase APT55_RS25710 PF00037 4Fe-4S binding domain APT55_RS25715 PF00005 ABC transporter APT55_RS25720 PF00730 HhH-GPD superfamily base excision DNA repair protein APT55_RS25720 PF14815 NUDIX domain APT55_RS25720 PF00633 Helix-hairpin-helix motif APT55_RS25730 PF11780 Protein of unknown function (DUF3318) APT55_RS25740 PF13193 AMP-binding enzyme C-terminal domain APT55_RS25740 PF00501 AMP-binding enzyme APT55_RS25740 PF00550 Phosphopantetheine attachment site APT55_RS25740 PF00668 Condensation domain APT55_RS25790 PF10674 Protein of unknown function (DUF2488) APT55_RS25795 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APT55_RS25810 PF11897 Protein of unknown function (DUF3417) APT55_RS25810 PF00343 Carbohydrate phosphorylase APT55_RS25815 PF00487 Fatty acid desaturase APT55_RS25840 PF00270 DEAD/DEAH box helicase APT55_RS25840 PF16124 RecQ zinc-binding APT55_RS25840 PF00271 Helicase conserved C-terminal domain APT55_RS25855 PF00005 ABC transporter APT55_RS25865 PF02225 PA domain APT55_RS25865 PF04389 Peptidase family M28 APT55_RS25870 PF02075 Crossover junction endodeoxyribonuclease RuvC APT55_RS25875 PF10576 Iron-sulfur binding domain of endonuclease III APT55_RS25875 PF00633 Helix-hairpin-helix motif APT55_RS25875 PF00730 HhH-GPD superfamily base excision DNA repair protein APT55_RS25895 PF13840 ACT domain APT55_RS25895 PF01842 ACT domain APT55_RS25895 PF00696 Amino acid kinase family APT55_RS25900 PF12697 Alpha/beta hydrolase family APT55_RS25930 PF01940 Integral membrane protein DUF92 APT55_RS25935 PF00535 Glycosyl transferase family 2 APT55_RS25940 PF13249 Squalene-hopene cyclase N-terminal domain APT55_RS25940 PF13243 Squalene-hopene cyclase C-terminal domain APT55_RS25945 PF00483 Nucleotidyl transferase APT55_RS25945 PF01050 Mannose-6-phosphate isomerase APT55_RS25950 PF03062 MBOAT, membrane-bound O-acyltransferase family APT55_RS25965 PF16658 Class II release factor RF3, C-terminal domain APT55_RS25965 PF00009 Elongation factor Tu GTP binding domain APT55_RS25970 PF01435 Peptidase family M48 APT55_RS25995 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APT55_RS25995 PF17287 POTRA domain APT55_RS25995 PF08479 POTRA domain, ShlB-type APT55_RS26025 PF04452 RNA methyltransferase APT55_RS26030 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS26040 PF00905 Penicillin binding protein transpeptidase domain APT55_RS26040 PF00912 Transglycosylase APT55_RS26040 PF17092 Penicillin-binding protein OB-like domain APT55_RS26060 PF00814 Glycoprotease family APT55_RS26070 PF10693 Protein of unknown function (DUF2499) APT55_RS26085 PF00342 Phosphoglucose isomerase APT55_RS26090 PF01435 Peptidase family M48 APT55_RS26095 PF06206 CpeT/CpcT family (DUF1001) APT55_RS26100 PF01047 MarR family APT55_RS26105 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS26110 PF08241 Methyltransferase domain APT55_RS26115 PF00534 Glycosyl transferases group 1 APT55_RS26120 PF02927 Cellulase N-terminal ig-like domain APT55_RS26120 PF00759 Glycosyl hydrolase family 9 APT55_RS26135 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APT55_RS26145 PF02567 Phenazine biosynthesis-like protein APT55_RS26150 PF03330 Lytic transglycolase APT55_RS26155 PF13545 Crp-like helix-turn-helix domain APT55_RS26160 PF00684 DnaJ central domain APT55_RS26160 PF01556 DnaJ C terminal domain APT55_RS26160 PF00226 DnaJ domain APT55_RS26170 PF00535 Glycosyl transferase family 2 APT55_RS26175 PF01613 Flavin reductase like domain APT55_RS26175 PF00258 Flavodoxin APT55_RS26180 PF00753 Metallo-beta-lactamase superfamily APT55_RS26180 PF01613 Flavin reductase like domain APT55_RS26185 PF03309 Type III pantothenate kinase APT55_RS26200 PF00117 Glutamine amidotransferase class-I APT55_RS26200 PF00958 GMP synthase C terminal domain APT55_RS26200 PF13673 Acetyltransferase (GNAT) domain APT55_RS26200 PF03352 Methyladenine glycosylase APT55_RS26200 PF13302 Acetyltransferase (GNAT) domain APT55_RS26205 PF03033 Glycosyltransferase family 28 N-terminal domain APT55_RS26205 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase APT55_RS26215 PF16864 Dimerisation domain APT55_RS26215 PF00891 O-methyltransferase domain APT55_RS26220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT55_RS26225 PF16653 Saccharopine dehydrogenase C-terminal domain APT55_RS26225 PF03435 Saccharopine dehydrogenase NADP binding domain APT55_RS26235 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) APT55_RS26240 PF00326 Prolyl oligopeptidase family APT55_RS26260 PF01740 STAS domain APT55_RS26265 PF01218 Coproporphyrinogen III oxidase APT55_RS26275 PF01883 Iron-sulfur cluster assembly protein APT55_RS26275 PF10609 NUBPL iron-transfer P-loop NTPase APT55_RS26280 PF01098 Cell cycle protein APT55_RS26290 PF12697 Alpha/beta hydrolase family APT55_RS26305 PF00675 Insulinase (Peptidase family M16) APT55_RS26305 PF05193 Peptidase M16 inactive domain APT55_RS26310 PF00675 Insulinase (Peptidase family M16) APT55_RS26310 PF05193 Peptidase M16 inactive domain APT55_RS26320 PF02605 Photosystem I reaction centre subunit XI APT55_RS26325 PF00625 Guanylate kinase APT55_RS26330 PF04025 Domain of unknown function (DUF370) APT55_RS26335 PF05670 NFACT protein RNA binding domain APT55_RS26340 PF18152 DAHP synthase ferredoxin-like domain APT55_RS26340 PF00793 DAHP synthetase I family APT55_RS26345 PF00924 Mechanosensitive ion channel APT55_RS26345 PF05552 Conserved TM helix APT55_RS26355 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system APT55_RS26360 PF13676 TIR domain APT55_RS26375 PF05221 S-adenosyl-L-homocysteine hydrolase APT55_RS26375 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APT55_RS26405 PF00072 Response regulator receiver domain APT55_RS26405 PF00196 Bacterial regulatory proteins, luxR family APT55_RS26415 PF14698 Argininosuccinate lyase C-terminal APT55_RS26415 PF00206 Lyase APT55_RS26420 PF00578 AhpC/TSA family APT55_RS26425 PF13344 Haloacid dehalogenase-like hydrolase APT55_RS26425 PF00293 NUDIX domain APT55_RS26430 PF06750 Bacterial Peptidase A24 N-terminal domain APT55_RS26430 PF01478 Type IV leader peptidase family APT55_RS26445 PF01872 RibD C-terminal domain APT55_RS26445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT55_RS26455 PF04015 Domain of unknown function (DUF362) APT55_RS26465 PF13520 Amino acid permease APT55_RS26475 PF01475 Ferric uptake regulator family APT55_RS26480 PF04539 Sigma-70 region 3 APT55_RS26480 PF04545 Sigma-70, region 4 APT55_RS26480 PF04542 Sigma-70 region 2 APT55_RS26480 PF00140 Sigma-70 factor, region 1.2 APT55_RS26515 PF01627 Hpt domain APT55_RS26515 PF07194 P2 response regulator binding domain APT55_RS26515 PF01584 CheW-like domain APT55_RS26515 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS26515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS26520 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT55_RS26520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS26525 PF13579 Glycosyl transferase 4-like domain APT55_RS26525 PF00534 Glycosyl transferases group 1 APT55_RS26540 PF01618 MotA/TolQ/ExbB proton channel family APT55_RS26545 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS26550 PF03129 Anticodon binding domain APT55_RS26550 PF04073 Aminoacyl-tRNA editing domain APT55_RS26550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT55_RS26555 PF13673 Acetyltransferase (GNAT) domain APT55_RS26570 PF01022 Bacterial regulatory protein, arsR family APT55_RS26575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS26575 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT55_RS26605 PF00582 Universal stress protein family APT55_RS26645 PF00210 Ferritin-like domain APT55_RS26650 PF04055 Radical SAM superfamily APT55_RS26665 PF00459 Inositol monophosphatase family APT55_RS26670 PF13545 Crp-like helix-turn-helix domain APT55_RS26670 PF00027 Cyclic nucleotide-binding domain APT55_RS26680 PF01336 OB-fold nucleic acid binding domain APT55_RS26680 PF13619 KTSC domain APT55_RS26680 PF00152 tRNA synthetases class II (D, K and N) APT55_RS26685 PF06426 Serine acetyltransferase, N-terminal APT55_RS26685 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS26705 PF01593 Flavin containing amine oxidoreductase APT55_RS26720 PF00486 Transcriptional regulatory protein, C terminal APT55_RS26720 PF00072 Response regulator receiver domain APT55_RS26720 PF01627 Hpt domain APT55_RS26725 PF00011 Hsp20/alpha crystallin family APT55_RS26730 PF04073 Aminoacyl-tRNA editing domain APT55_RS26735 PF00535 Glycosyl transferase family 2 APT55_RS26740 PF01479 S4 domain APT55_RS26740 PF00849 RNA pseudouridylate synthase APT55_RS26755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS26775 PF01593 Flavin containing amine oxidoreductase APT55_RS26790 PF00920 Dehydratase family APT55_RS26800 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS26825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS26825 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS26825 PF00989 PAS fold APT55_RS26835 PF00484 Carbonic anhydrase APT55_RS26850 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV APT55_RS26855 PF00873 AcrB/AcrD/AcrF family APT55_RS26860 PF13533 Biotin-lipoyl like APT55_RS26885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT55_RS26885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT55_RS26905 PF00005 ABC transporter APT55_RS26910 PF02653 Branched-chain amino acid transport system / permease component APT55_RS26915 PF02653 Branched-chain amino acid transport system / permease component APT55_RS26925 PF02152 Dihydroneopterin aldolase APT55_RS26935 PF05598 Transposase domain (DUF772) APT55_RS26945 PF08369 Proto-chlorophyllide reductase 57 kD subunit APT55_RS26945 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS26950 PF09115 DNA polymerase III, delta subunit, C terminal APT55_RS26955 PF06039 Malate:quinone oxidoreductase (Mqo) APT55_RS26965 PF00588 SpoU rRNA Methylase family APT55_RS26975 PF01112 Asparaginase APT55_RS26985 PF00155 Aminotransferase class I and II APT55_RS26990 PF05239 PRC-barrel domain APT55_RS26990 PF01782 RimM N-terminal domain APT55_RS27005 PF00924 Mechanosensitive ion channel APT55_RS27045 PF00400 WD domain, G-beta repeat APT55_RS27060 PF00027 Cyclic nucleotide-binding domain APT55_RS27060 PF13545 Crp-like helix-turn-helix domain APT55_RS27080 PF00989 PAS fold APT55_RS27080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS27080 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS27085 PF00486 Transcriptional regulatory protein, C terminal APT55_RS27085 PF00072 Response regulator receiver domain APT55_RS27090 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS27090 PF00672 HAMP domain APT55_RS27090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS27115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT55_RS27115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT55_RS27120 PF02570 Precorrin-8X methylmutase APT55_RS27125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS27130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS27170 PF00210 Ferritin-like domain APT55_RS27175 PF01593 Flavin containing amine oxidoreductase APT55_RS27185 PF00486 Transcriptional regulatory protein, C terminal APT55_RS27185 PF03704 Bacterial transcriptional activator domain APT55_RS27185 PF00931 NB-ARC domain APT55_RS27210 PF00067 Cytochrome P450 APT55_RS27215 PF00425 chorismate binding enzyme APT55_RS27225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT55_RS27225 PF16582 Middle domain of thiamine pyrophosphate APT55_RS27230 PF00378 Enoyl-CoA hydratase/isomerase APT55_RS27235 PF03747 ADP-ribosylglycohydrolase APT55_RS27250 PF00676 Dehydrogenase E1 component APT55_RS27255 PF01556 DnaJ C terminal domain APT55_RS27255 PF00684 DnaJ central domain APT55_RS27255 PF00226 DnaJ domain APT55_RS27265 PF00486 Transcriptional regulatory protein, C terminal APT55_RS27265 PF00072 Response regulator receiver domain APT55_RS27270 PF00989 PAS fold APT55_RS27270 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS27270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS27275 PF00849 RNA pseudouridylate synthase APT55_RS27275 PF01479 S4 domain APT55_RS27280 PF13464 Domain of unknown function (DUF4115) APT55_RS27285 PF01225 Mur ligase family, catalytic domain APT55_RS27285 PF08245 Mur ligase middle domain APT55_RS27285 PF02875 Mur ligase family, glutamate ligase domain APT55_RS27295 PF03699 Uncharacterised protein family (UPF0182) APT55_RS27305 PF03040 CemA family APT55_RS27310 PF04542 Sigma-70 region 2 APT55_RS27310 PF00140 Sigma-70 factor, region 1.2 APT55_RS27310 PF04539 Sigma-70 region 3 APT55_RS27310 PF04545 Sigma-70, region 4 APT55_RS27315 PF02142 MGS-like domain APT55_RS27315 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT55_RS27315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT55_RS27325 PF02868 Thermolysin metallopeptidase, alpha-helical domain APT55_RS27325 PF01447 Thermolysin metallopeptidase, catalytic domain APT55_RS27325 PF16485 Protealysin propeptide APT55_RS27340 PF04029 2-phosphosulpholactate phosphatase APT55_RS27355 PF01938 TRAM domain APT55_RS27355 PF04055 Radical SAM superfamily APT55_RS27355 PF00919 Uncharacterized protein family UPF0004 APT55_RS27365 PF13181 Tetratricopeptide repeat APT55_RS27365 PF01435 Peptidase family M48 APT55_RS27370 PF00149 Calcineurin-like phosphoesterase APT55_RS27380 PF01116 Fructose-bisphosphate aldolase class-II APT55_RS27385 PF04107 Glutamate-cysteine ligase family 2(GCS2) APT55_RS27390 PF00963 Cohesin domain APT55_RS27390 PF00395 S-layer homology domain APT55_RS27420 PF05598 Transposase domain (DUF772) APT55_RS27495 PF00069 Protein kinase domain APT55_RS27495 PF03793 PASTA domain APT55_RS27515 PF03793 PASTA domain APT55_RS27515 PF00069 Protein kinase domain APT55_RS27520 PF00069 Protein kinase domain APT55_RS27520 PF03793 PASTA domain APT55_RS27525 PF03793 PASTA domain APT55_RS27525 PF00069 Protein kinase domain APT55_RS27530 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS27530 PF07724 AAA domain (Cdc48 subfamily) APT55_RS27530 PF17871 AAA lid domain APT55_RS27530 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS27530 PF02861 Clp amino terminal domain, pathogenicity island component APT55_RS27590 PF01209 ubiE/COQ5 methyltransferase family APT55_RS27605 PF02653 Branched-chain amino acid transport system / permease component APT55_RS27610 PF00005 ABC transporter APT55_RS27615 PF02608 ABC transporter substrate-binding protein PnrA-like APT55_RS27625 PF00355 Rieske [2Fe-2S] domain APT55_RS27630 PF01333 Apocytochrome F, C-terminal APT55_RS27630 PF16639 Apocytochrome F, N-terminal APT55_RS27640 PF00390 Malic enzyme, N-terminal domain APT55_RS27640 PF03949 Malic enzyme, NAD binding domain APT55_RS27645 PF07690 Major Facilitator Superfamily APT55_RS27675 PF00128 Alpha amylase, catalytic domain APT55_RS27675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT55_RS27680 PF01569 PAP2 superfamily APT55_RS27700 PF05685 Putative restriction endonuclease APT55_RS27705 PF04012 PspA/IM30 family APT55_RS27710 PF01430 Hsp33 protein APT55_RS27730 PF17954 Quercetinase C-terminal cupin domain APT55_RS27730 PF02678 Pirin APT55_RS27735 PF00486 Transcriptional regulatory protein, C terminal APT55_RS27735 PF00072 Response regulator receiver domain APT55_RS27750 PF00005 ABC transporter APT55_RS27750 PF14524 Wzt C-terminal domain APT55_RS27780 PF00571 CBS domain APT55_RS27780 PF01380 SIS domain APT55_RS27785 PF03062 MBOAT, membrane-bound O-acyltransferase family APT55_RS27795 PF02348 Cytidylyltransferase APT55_RS27805 PF07691 PA14 domain APT55_RS27805 PF12791 Anti-sigma factor N-terminus APT55_RS27810 PF00793 DAHP synthetase I family APT55_RS27830 PF00535 Glycosyl transferase family 2 APT55_RS27835 PF00535 Glycosyl transferase family 2 APT55_RS27840 PF00534 Glycosyl transferases group 1 APT55_RS27840 PF13439 Glycosyltransferase Family 4 APT55_RS27850 PF00535 Glycosyl transferase family 2 APT55_RS27870 PF16363 GDP-mannose 4,6 dehydratase APT55_RS27885 PF13439 Glycosyltransferase Family 4 APT55_RS27885 PF00534 Glycosyl transferases group 1 APT55_RS27890 PF00534 Glycosyl transferases group 1 APT55_RS27890 PF13439 Glycosyltransferase Family 4 APT55_RS27895 PF00534 Glycosyl transferases group 1 APT55_RS27905 PF00535 Glycosyl transferase family 2 APT55_RS27930 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS27935 PF00535 Glycosyl transferase family 2 APT55_RS27940 PF01370 NAD dependent epimerase/dehydratase family APT55_RS27945 PF00953 Glycosyl transferase family 4 APT55_RS27950 PF00486 Transcriptional regulatory protein, C terminal APT55_RS27950 PF00072 Response regulator receiver domain APT55_RS27960 PF00535 Glycosyl transferase family 2 APT55_RS27965 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS27970 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT55_RS27970 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS27975 PF00171 Aldehyde dehydrogenase family APT55_RS27980 PF08544 GHMP kinases C terminal APT55_RS27980 PF00288 GHMP kinases N terminal domain APT55_RS27980 PF10509 Galactokinase galactose-binding signature APT55_RS27990 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain APT55_RS27990 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain APT55_RS27995 PF16363 GDP-mannose 4,6 dehydratase APT55_RS28000 PF03275 UDP-galactopyranose mutase APT55_RS28015 PF08125 Mannitol dehydrogenase C-terminal domain APT55_RS28015 PF01232 Mannitol dehydrogenase Rossmann domain APT55_RS28030 PF00375 Sodium:dicarboxylate symporter family APT55_RS28040 PF00174 Oxidoreductase molybdopterin binding domain APT55_RS28045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28045 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28045 PF00989 PAS fold APT55_RS28045 PF16736 Single Cache-like APT55_RS28060 PF12697 Alpha/beta hydrolase family APT55_RS28085 PF10017 Histidine-specific methyltransferase, SAM-dependent APT55_RS28125 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS28125 PF12867 DinB superfamily APT55_RS28135 PF04224 Protein of unknown function, DUF417 APT55_RS28140 PF00732 GMC oxidoreductase APT55_RS28140 PF05199 GMC oxidoreductase APT55_RS28155 PF00355 Rieske [2Fe-2S] domain APT55_RS28160 PF01641 SelR domain APT55_RS28165 PF00486 Transcriptional regulatory protein, C terminal APT55_RS28165 PF00072 Response regulator receiver domain APT55_RS28170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28170 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28170 PF13426 PAS domain APT55_RS28170 PF00672 HAMP domain APT55_RS28175 PF00174 Oxidoreductase molybdopterin binding domain APT55_RS28180 PF01292 Prokaryotic cytochrome b561 APT55_RS28185 PF02683 Cytochrome C biogenesis protein transmembrane region APT55_RS28185 PF00578 AhpC/TSA family APT55_RS28185 PF17991 Thioredoxin like C-terminal domain APT55_RS28190 PF17991 Thioredoxin like C-terminal domain APT55_RS28190 PF02683 Cytochrome C biogenesis protein transmembrane region APT55_RS28190 PF00578 AhpC/TSA family APT55_RS28205 PF01791 DeoC/LacD family aldolase APT55_RS28210 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APT55_RS28215 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APT55_RS28215 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APT55_RS28220 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT55_RS28220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS28225 PF00923 Transaldolase/Fructose-6-phosphate aldolase APT55_RS28230 PF02685 Glucokinase APT55_RS28240 PF02685 Glucokinase APT55_RS28245 PF01625 Peptide methionine sulfoxide reductase APT55_RS28265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28265 PF00989 PAS fold APT55_RS28265 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28270 PF06965 Na+/H+ antiporter 1 APT55_RS28270 PF13462 Thioredoxin APT55_RS28290 PF00196 Bacterial regulatory proteins, luxR family APT55_RS28290 PF00072 Response regulator receiver domain APT55_RS28295 PF07730 Histidine kinase APT55_RS28295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28310 PF00072 Response regulator receiver domain APT55_RS28310 PF00486 Transcriptional regulatory protein, C terminal APT55_RS28330 PF00892 EamA-like transporter family APT55_RS28350 PF07238 PilZ domain APT55_RS28350 PF00535 Glycosyl transferase family 2 APT55_RS28350 PF03552 Cellulose synthase APT55_RS28355 PF00486 Transcriptional regulatory protein, C terminal APT55_RS28355 PF00072 Response regulator receiver domain APT55_RS28360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28360 PF13426 PAS domain APT55_RS28360 PF00672 HAMP domain APT55_RS28360 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28365 PF00027 Cyclic nucleotide-binding domain APT55_RS28365 PF13545 Crp-like helix-turn-helix domain APT55_RS28370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28370 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28370 PF00989 PAS fold APT55_RS28390 PF00817 impB/mucB/samB family APT55_RS28390 PF11799 impB/mucB/samB family C-terminal domain APT55_RS28400 PF00400 WD domain, G-beta repeat APT55_RS28515 PF10706 Aminoglycoside-2''-adenylyltransferase APT55_RS28520 PF13411 MerR HTH family regulatory protein APT55_RS28525 PF00672 HAMP domain APT55_RS28525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28525 PF07730 Histidine kinase APT55_RS28530 PF00196 Bacterial regulatory proteins, luxR family APT55_RS28530 PF00072 Response regulator receiver domain APT55_RS28555 PF02517 CPBP intramembrane metalloprotease APT55_RS28630 PF00082 Subtilase family APT55_RS28630 PF05922 Peptidase inhibitor I9 APT55_RS28660 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28660 PF00989 PAS fold APT55_RS28660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28670 PF00665 Integrase core domain APT55_RS28675 PF01695 IstB-like ATP binding protein APT55_RS28730 PF02525 Flavodoxin-like fold APT55_RS28760 PF01965 DJ-1/PfpI family APT55_RS28765 PF00144 Beta-lactamase APT55_RS28790 PF03795 YCII-related domain APT55_RS28795 PF08281 Sigma-70, region 4 APT55_RS28795 PF04542 Sigma-70 region 2 APT55_RS28820 PF07884 Vitamin K epoxide reductase family APT55_RS28825 PF02540 NAD synthase APT55_RS28845 PF02390 Putative methyltransferase APT55_RS28855 PF00563 EAL domain APT55_RS28855 PF01590 GAF domain APT55_RS28855 PF00360 Phytochrome region APT55_RS28855 PF00990 Diguanylate cyclase, GGDEF domain APT55_RS28860 PF00072 Response regulator receiver domain APT55_RS28865 PF13188 PAS domain APT55_RS28865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28865 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28865 PF00072 Response regulator receiver domain APT55_RS28865 PF08448 PAS fold APT55_RS28870 PF00989 PAS fold APT55_RS28870 PF16736 Single Cache-like APT55_RS28870 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28875 PF03633 Glycosyl hydrolase family 65, C-terminal domain APT55_RS28875 PF03632 Glycosyl hydrolase family 65 central catalytic domain APT55_RS28875 PF03636 Glycosyl hydrolase family 65, N-terminal domain APT55_RS28880 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS28880 PF00072 Response regulator receiver domain APT55_RS28885 PF00931 NB-ARC domain APT55_RS28885 PF00400 WD domain, G-beta repeat APT55_RS28890 PF04055 Radical SAM superfamily APT55_RS28890 PF02310 B12 binding domain APT55_RS28890 PF13282 Domain of unknown function (DUF4070) APT55_RS28920 PF00491 Arginase family APT55_RS28925 PF00133 tRNA synthetases class I (I, L, M and V) APT55_RS28925 PF13603 Leucyl-tRNA synthetase, Domain 2 APT55_RS28925 PF08264 Anticodon-binding domain of tRNA APT55_RS28930 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family APT55_RS28960 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS28965 PF00085 Thioredoxin APT55_RS28990 PF02669 K+-transporting ATPase, c chain APT55_RS29005 PF03814 Potassium-transporting ATPase A subunit APT55_RS29010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS29010 PF13426 PAS domain APT55_RS29010 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS29010 PF00672 HAMP domain APT55_RS29015 PF00196 Bacterial regulatory proteins, luxR family APT55_RS29015 PF00072 Response regulator receiver domain APT55_RS29020 PF03186 CobD/Cbib protein APT55_RS29025 PF12804 MobA-like NTP transferase domain APT55_RS29040 PF16736 Single Cache-like APT55_RS29040 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS29040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS29040 PF00989 PAS fold APT55_RS29045 PF00072 Response regulator receiver domain APT55_RS29045 PF00486 Transcriptional regulatory protein, C terminal APT55_RS29050 PF01370 NAD dependent epimerase/dehydratase family APT55_RS29055 PF13545 Crp-like helix-turn-helix domain APT55_RS29065 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS29090 PF00124 Photosynthetic reaction centre protein APT55_RS29095 PF13358 DDE superfamily endonuclease APT55_RS29095 PF13592 Winged helix-turn helix APT55_RS29110 PF04960 Glutaminase APT55_RS29115 PF01915 Glycosyl hydrolase family 3 C-terminal domain APT55_RS29115 PF00933 Glycosyl hydrolase family 3 N terminal domain APT55_RS29120 PF00850 Histone deacetylase domain APT55_RS29135 PF02617 ATP-dependent Clp protease adaptor protein ClpS APT55_RS29150 PF04055 Radical SAM superfamily APT55_RS29155 PF00989 PAS fold APT55_RS29155 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS29155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS29160 PF00795 Carbon-nitrogen hydrolase APT55_RS29165 PF00857 Isochorismatase family APT55_RS29175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS29175 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS29175 PF00989 PAS fold APT55_RS29175 PF13188 PAS domain APT55_RS29175 PF13426 PAS domain APT55_RS29190 PF00069 Protein kinase domain APT55_RS29190 PF03793 PASTA domain APT55_RS29200 PF00069 Protein kinase domain APT55_RS29210 PF01208 Uroporphyrinogen decarboxylase (URO-D) APT55_RS29215 PF00550 Phosphopantetheine attachment site APT55_RS29215 PF07993 Male sterility protein APT55_RS29225 PF00271 Helicase conserved C-terminal domain APT55_RS29225 PF08148 DSHCT (NUC185) domain APT55_RS29225 PF00270 DEAD/DEAH box helicase APT55_RS29320 PF01556 DnaJ C terminal domain APT55_RS29320 PF00684 DnaJ central domain APT55_RS29320 PF00226 DnaJ domain APT55_RS29375 PF01555 DNA methylase APT55_RS29385 PF02899 Phage integrase, N-terminal SAM-like domain APT55_RS29385 PF00589 Phage integrase family APT55_RS29405 PF00216 Bacterial DNA-binding protein APT55_RS29540 PF13532 2OG-Fe(II) oxygenase superfamily APT55_RS29670 PF13614 AAA domain APT55_RS29840 PF07728 AAA domain (dynein-related subfamily) APT55_RS29840 PF12102 Domain of unknown function (DUF3578) APT55_RS29935 PF02899 Phage integrase, N-terminal SAM-like domain APT55_RS29935 PF00589 Phage integrase family APT55_RS29945 PF03412 Peptidase C39 family APT55_RS29945 PF00664 ABC transporter transmembrane region APT55_RS29945 PF00005 ABC transporter APT55_RS29990 PF12169 DNA polymerase III subunits gamma and tau domain III APT55_RS29995 PF09115 DNA polymerase III, delta subunit, C terminal APT55_RS30020 PF00140 Sigma-70 factor, region 1.2 APT55_RS30020 PF04542 Sigma-70 region 2 APT55_RS30020 PF04539 Sigma-70 region 3 APT55_RS30020 PF04545 Sigma-70, region 4 APT55_RS30065 PF01797 Transposase IS200 like APT55_RS30075 PF01661 Macro domain APT55_RS30100 PF01434 Peptidase family M41 APT55_RS30100 PF06480 FtsH Extracellular APT55_RS30100 PF17862 AAA+ lid domain APT55_RS30100 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS30115 PF01381 Helix-turn-helix APT55_RS30120 PF00271 Helicase conserved C-terminal domain APT55_RS30120 PF00176 SNF2 family N-terminal domain APT55_RS30140 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS30175 PF06250 YhcG PDDEXK nuclease domain APT55_RS30175 PF17761 DUF1016 N-terminal domain APT55_RS30210 PF12802 MarR family APT55_RS30265 PF03795 YCII-related domain APT55_RS30270 PF08281 Sigma-70, region 4 APT55_RS30270 PF04542 Sigma-70 region 2 APT55_RS30310 PF02798 Glutathione S-transferase, N-terminal domain APT55_RS30310 PF14497 Glutathione S-transferase, C-terminal domain APT55_RS30350 PF03193 RsgA GTPase APT55_RS30355 PF01209 ubiE/COQ5 methyltransferase family APT55_RS30365 PF00583 Acetyltransferase (GNAT) family APT55_RS30385 PF18340 DNA relaxase TraI 2B/2B-like domain APT55_RS30385 PF18272 single-stranded DNA binding TraI N-terminal subdomain APT55_RS30385 PF07057 DNA helicase TraI APT55_RS30385 PF08751 TrwC relaxase APT55_RS30475 PF03575 Peptidase family S51 APT55_RS30535 PF00005 ABC transporter APT55_RS30535 PF00664 ABC transporter transmembrane region APT55_RS30535 PF03412 Peptidase C39 family APT55_RS30550 PF00970 Oxidoreductase FAD-binding domain APT55_RS30550 PF00175 Oxidoreductase NAD-binding domain APT55_RS30550 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS30560 PF00069 Protein kinase domain APT55_RS30625 PF00067 Cytochrome P450 APT55_RS30650 PF07714 Protein tyrosine kinase APT55_RS30670 PF00665 Integrase core domain APT55_RS30675 PF01695 IstB-like ATP binding protein APT55_RS30680 PF00665 Integrase core domain APT55_RS30680 PF02796 Helix-turn-helix domain of resolvase APT55_RS30690 PF00593 TonB dependent receptor APT55_RS30690 PF07715 TonB-dependent Receptor Plug Domain APT55_RS30695 PF01804 Penicillin amidase APT55_RS30700 PF00975 Thioesterase domain APT55_RS30705 PF00550 Phosphopantetheine attachment site APT55_RS30705 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30705 PF00501 AMP-binding enzyme APT55_RS30705 PF00668 Condensation domain APT55_RS30705 PF07993 Male sterility protein APT55_RS30710 PF00550 Phosphopantetheine attachment site APT55_RS30710 PF00668 Condensation domain APT55_RS30710 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30710 PF00501 AMP-binding enzyme APT55_RS30715 PF00550 Phosphopantetheine attachment site APT55_RS30715 PF00668 Condensation domain APT55_RS30715 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30715 PF00501 AMP-binding enzyme APT55_RS30720 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT55_RS30725 PF00550 Phosphopantetheine attachment site APT55_RS30725 PF00668 Condensation domain APT55_RS30725 PF00501 AMP-binding enzyme APT55_RS30725 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30730 PF07993 Male sterility protein APT55_RS30730 PF00550 Phosphopantetheine attachment site APT55_RS30730 PF00668 Condensation domain APT55_RS30730 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30730 PF00501 AMP-binding enzyme APT55_RS30735 PF00550 Phosphopantetheine attachment site APT55_RS30735 PF00668 Condensation domain APT55_RS30735 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30735 PF00501 AMP-binding enzyme APT55_RS30740 PF00109 Beta-ketoacyl synthase, N-terminal domain APT55_RS30740 PF16197 Ketoacyl-synthetase C-terminal extension APT55_RS30740 PF02801 Beta-ketoacyl synthase, C-terminal domain APT55_RS30740 PF00550 Phosphopantetheine attachment site APT55_RS30740 PF00698 Acyl transferase domain APT55_RS30740 PF00668 Condensation domain APT55_RS30745 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30745 PF00501 AMP-binding enzyme APT55_RS30745 PF00550 Phosphopantetheine attachment site APT55_RS30745 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30745 PF00550 Phosphopantetheine attachment site APT55_RS30745 PF00668 Condensation domain APT55_RS30745 PF00501 AMP-binding enzyme APT55_RS30745 PF00668 Condensation domain APT55_RS30750 PF07690 Major Facilitator Superfamily APT55_RS30760 PF01497 Periplasmic binding protein APT55_RS30770 PF00210 Ferritin-like domain APT55_RS30780 PF01032 FecCD transport family APT55_RS30785 PF01032 FecCD transport family APT55_RS30790 PF00664 ABC transporter transmembrane region APT55_RS30790 PF00005 ABC transporter APT55_RS30795 PF03649 Uncharacterised protein family (UPF0014) APT55_RS30815 PF00593 TonB dependent receptor APT55_RS30815 PF07715 TonB-dependent Receptor Plug Domain APT55_RS30820 PF01797 Transposase IS200 like APT55_RS30840 PF00072 Response regulator receiver domain APT55_RS30840 PF01627 Hpt domain APT55_RS30840 PF00672 HAMP domain APT55_RS30840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30840 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) APT55_RS30855 PF00486 Transcriptional regulatory protein, C terminal APT55_RS30855 PF00072 Response regulator receiver domain APT55_RS30865 PF00672 HAMP domain APT55_RS30865 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30870 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30870 PF01627 Hpt domain APT55_RS30870 PF00989 PAS fold APT55_RS30870 PF00072 Response regulator receiver domain APT55_RS30870 PF18415 Histidine kinase receptor ArcB trans-membrane domain APT55_RS30875 PF00072 Response regulator receiver domain APT55_RS30880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30880 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30880 PF09308 LuxQ, periplasmic APT55_RS30880 PF00072 Response regulator receiver domain APT55_RS30900 PF13408 Recombinase zinc beta ribbon domain APT55_RS30900 PF00239 Resolvase, N terminal domain APT55_RS30900 PF07508 Recombinase APT55_RS30915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30915 PF08448 PAS fold APT55_RS30915 PF08447 PAS fold APT55_RS30920 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS30920 PF00355 Rieske [2Fe-2S] domain APT55_RS30925 PF02653 Branched-chain amino acid transport system / permease component APT55_RS30935 PF00005 ABC transporter APT55_RS30950 PF00072 Response regulator receiver domain APT55_RS30950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30950 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30950 PF09308 LuxQ, periplasmic APT55_RS30955 PF03793 PASTA domain APT55_RS30955 PF00069 Protein kinase domain APT55_RS30960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30960 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30960 PF09308 LuxQ, periplasmic APT55_RS30960 PF00072 Response regulator receiver domain APT55_RS30965 PF09308 LuxQ, periplasmic APT55_RS30965 PF00072 Response regulator receiver domain APT55_RS30965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30965 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS31075 PF02195 ParB-like nuclease domain APT55_RS31085 PF13614 AAA domain APT55_RS31105 PF13614 AAA domain APT55_RS31125 PF00633 Helix-hairpin-helix motif APT55_RS31125 PF04002 RadC-like JAB domain APT55_RS31215 PF04002 RadC-like JAB domain APT55_RS31240 PF17761 DUF1016 N-terminal domain APT55_RS31240 PF06250 YhcG PDDEXK nuclease domain APT55_RS31290 PF01695 IstB-like ATP binding protein APT55_RS31295 PF00665 Integrase core domain APT55_RS31310 PF00486 Transcriptional regulatory protein, C terminal APT55_RS31310 PF00931 NB-ARC domain APT55_RS31310 PF03704 Bacterial transcriptional activator domain APT55_RS31330 PF12965 Domain of unknown function (DUF3854) APT55_RS31345 PF03992 Antibiotic biosynthesis monooxygenase APT55_RS31350 PF17782 DprA winged helix domain APT55_RS31350 PF02481 DNA recombination-mediator protein A APT55_RS31375 PF05901 Excalibur calcium-binding domain APT55_RS31375 PF00565 Staphylococcal nuclease homologue APT55_RS31440 PF01930 Domain of unknown function DUF83 APT55_RS31440 PF01867 CRISPR associated protein Cas1 APT55_RS31445 PF09827 CRISPR associated protein Cas2 APT55_RS31485 PF00665 Integrase core domain APT55_RS31490 PF01695 IstB-like ATP binding protein APT55_RS31500 PF00182 Chitinase class I APT55_RS31520 PF00400 WD domain, G-beta repeat APT55_RS31545 PF00931 NB-ARC domain APT55_RS31545 PF00400 WD domain, G-beta repeat APT55_RS31585 PF01420 Type I restriction modification DNA specificity domain APT55_RS31745 PF13614 AAA domain APT55_RS31825 PF02687 FtsX-like permease family APT55_RS31825 PF12704 MacB-like periplasmic core domain APT55_RS31825 PF00005 ABC transporter APT55_RS31830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT55_RS31835 PF00196 Bacterial regulatory proteins, luxR family APT55_RS31835 PF00072 Response regulator receiver domain APT55_RS31850 PF03412 Peptidase C39 family APT55_RS31850 PF00664 ABC transporter transmembrane region APT55_RS31850 PF00005 ABC transporter APT55_RS31855 PF13533 Biotin-lipoyl like APT55_RS31860 PF00005 ABC transporter APT55_RS31860 PF03412 Peptidase C39 family APT55_RS31860 PF00664 ABC transporter transmembrane region APT55_RS31865 PF03023 Lipid II flippase MurJ