APT55_RS00060	PWY-6788	cellulose degradation II (fungi)
APT55_RS00070	PWY-1001	cellulose biosynthesis
APT55_RS00090	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT55_RS00090	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT55_RS00090	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APT55_RS00150	PWY-5367	petroselinate biosynthesis
APT55_RS00150	PWY-5515	L-arabinose degradation II
APT55_RS00150	PWY-5525	D-glucuronate degradation I
APT55_RS00150	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT55_RS00150	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT55_RS00150	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT55_RS00150	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT55_RS00150	PWY-6113	superpathway of mycolate biosynthesis
APT55_RS00150	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT55_RS00150	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT55_RS00150	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT55_RS00150	PWY-7663	gondoate biosynthesis (anaerobic)
APT55_RS00150	PWY-7664	oleate biosynthesis IV (anaerobic)
APT55_RS00150	PWYG-321	mycolate biosynthesis
APT55_RS00285	PWY-2201	folate transformations I
APT55_RS00285	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT55_RS00290	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS00365	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS00365	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT55_RS00365	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS00365	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT55_RS00380	PWY-5941	glycogen degradation II (eukaryotic)
APT55_RS00380	PWY-6724	starch degradation II
APT55_RS00380	PWY-6737	starch degradation V
APT55_RS00380	PWY-7238	sucrose biosynthesis II
APT55_RS00385	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS00385	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT55_RS00385	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS00385	PWY-5723	Rubisco shunt
APT55_RS00385	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS00385	PWY-6886	1-butanol autotrophic biosynthesis
APT55_RS00385	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS00385	PWY-7003	glycerol degradation to butanol
APT55_RS00385	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT55_RS00385	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT55_RS00420	PWY-7052	cyanophycin metabolism
APT55_RS00440	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS00440	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS00490	PWY-5129	sphingolipid biosynthesis (plants)
APT55_RS00500	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT55_RS00500	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT55_RS00530	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS00530	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS00530	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS00530	PWY-7003	glycerol degradation to butanol
APT55_RS00540	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT55_RS00540	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT55_RS00545	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT55_RS00545	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT55_RS00595	PWY-2201	folate transformations I
APT55_RS00595	PWY-3841	folate transformations II
APT55_RS00595	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT55_RS00780	PWY-7560	methylerythritol phosphate pathway II
APT55_RS00795	PWY-2941	L-lysine biosynthesis II
APT55_RS00795	PWY-2942	L-lysine biosynthesis III
APT55_RS00795	PWY-5097	L-lysine biosynthesis VI
APT55_RS00805	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT55_RS00805	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT55_RS00835	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT55_RS00835	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT55_RS00935	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS01030	PWY-7158	L-phenylalanine degradation V
APT55_RS01100	PWY-622	starch biosynthesis
APT55_RS01145	PWY-5941	glycogen degradation II (eukaryotic)
APT55_RS01145	PWY-6724	starch degradation II
APT55_RS01145	PWY-6737	starch degradation V
APT55_RS01145	PWY-7238	sucrose biosynthesis II
APT55_RS01215	PWY-2201	folate transformations I
APT55_RS01215	PWY-3841	folate transformations II
APT55_RS01480	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT55_RS01510	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT55_RS01570	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT55_RS01570	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT55_RS01625	PWY-6749	CMP-legionaminate biosynthesis I
APT55_RS01840	PWY-6164	3-dehydroquinate biosynthesis I
APT55_RS01870	PWY-6700	queuosine biosynthesis
APT55_RS01925	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APT55_RS01925	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT55_RS01925	PWY-6268	adenosylcobalamin salvage from cobalamin
APT55_RS01925	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT55_RS02030	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS02095	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT55_RS02205	PWY-4261	glycerol degradation I
APT55_RS02240	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APT55_RS02240	PWY-7118	chitin degradation to ethanol
APT55_RS02395	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS02395	PWY-622	starch biosynthesis
APT55_RS02410	PWY-3801	sucrose degradation II (sucrose synthase)
APT55_RS02415	PWY-2721	trehalose degradation III
APT55_RS02415	PWY-2722	trehalose degradation IV
APT55_RS02415	PWY-6317	galactose degradation I (Leloir pathway)
APT55_RS02415	PWY-7459	kojibiose degradation
APT55_RS02425	PWY-6654	phosphopantothenate biosynthesis III
APT55_RS02530	PWY-6167	flavin biosynthesis II (archaea)
APT55_RS02530	PWY-6168	flavin biosynthesis III (fungi)
APT55_RS02815	PWY-2261	ascorbate glutathione cycle
APT55_RS02815	PWY-4061	glutathione-mediated detoxification I
APT55_RS02815	PWY-4202	arsenate detoxification I (glutaredoxin)
APT55_RS02815	PWY-6370	ascorbate recycling (cytosolic)
APT55_RS02815	PWY-6842	glutathione-mediated detoxification II
APT55_RS02815	PWY-7112	4-hydroxy-2-nonenal detoxification
APT55_RS02815	PWY-7533	gliotoxin biosynthesis
APT55_RS02880	PWY-7723	APT55_RS02880
APT55_RS03045	PWY-6936	seleno-amino acid biosynthesis
APT55_RS03080	PWY-5344	L-homocysteine biosynthesis
APT55_RS03085	PWY-5344	L-homocysteine biosynthesis
APT55_RS03085	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
APT55_RS03090	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT55_RS03120	PWY-3781	aerobic respiration I (cytochrome c)
APT55_RS03120	PWY-4521	arsenite oxidation I (respiratory)
APT55_RS03120	PWY-6692	Fe(II) oxidation
APT55_RS03120	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT55_RS03230	PWY-5686	UMP biosynthesis
APT55_RS03285	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS03285	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS03295	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS03295	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS03305	PWY-5279	sulfite oxidation II
APT55_RS03315	PWY-702	L-methionine biosynthesis II
APT55_RS03320	PWY-2161	folate polyglutamylation
APT55_RS03335	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS03335	PWY-1622	formaldehyde assimilation I (serine pathway)
APT55_RS03335	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT55_RS03335	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS03335	PWY-5723	Rubisco shunt
APT55_RS03335	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS03335	PWY-6886	1-butanol autotrophic biosynthesis
APT55_RS03335	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS03335	PWY-7003	glycerol degradation to butanol
APT55_RS03335	PWY-7124	ethylene biosynthesis V (engineered)
APT55_RS03335	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT55_RS03380	PWY-4381	fatty acid biosynthesis initiation I
APT55_RS03380	PWY-5743	3-hydroxypropanoate cycle
APT55_RS03380	PWY-5744	glyoxylate assimilation
APT55_RS03380	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT55_RS03380	PWY-6679	jadomycin biosynthesis
APT55_RS03380	PWY-6722	candicidin biosynthesis
APT55_RS03380	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT55_RS03420	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
APT55_RS03440	PWY-4983	L-citrulline-nitric oxide cycle
APT55_RS03440	PWY-4984	urea cycle
APT55_RS03440	PWY-5	canavanine biosynthesis
APT55_RS03440	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT55_RS03440	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT55_RS03470	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT55_RS03470	PWY-5109	2-methylbutanoate biosynthesis
APT55_RS03470	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT55_RS03470	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT55_RS03470	PWY-5177	glutaryl-CoA degradation
APT55_RS03470	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT55_RS03470	PWY-6435	4-hydroxybenzoate biosynthesis V
APT55_RS03470	PWY-6583	pyruvate fermentation to butanol I
APT55_RS03470	PWY-6863	pyruvate fermentation to hexanol
APT55_RS03470	PWY-6883	pyruvate fermentation to butanol II
APT55_RS03470	PWY-6944	androstenedione degradation
APT55_RS03470	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT55_RS03470	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT55_RS03470	PWY-7007	methyl ketone biosynthesis
APT55_RS03470	PWY-7046	4-coumarate degradation (anaerobic)
APT55_RS03470	PWY-7094	fatty acid salvage
APT55_RS03470	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT55_RS03470	PWY-735	jasmonic acid biosynthesis
APT55_RS03470	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT55_RS03470	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT55_RS03470	PWY-7726	APT55_RS03470
APT55_RS03500	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APT55_RS03500	PWY-7118	chitin degradation to ethanol
APT55_RS03550	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS03550	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS03550	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS03550	PWY-7003	glycerol degradation to butanol
APT55_RS03785	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS03785	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS03785	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS03785	PWY-7003	glycerol degradation to butanol
APT55_RS03800	PWY-3341	L-proline biosynthesis III
APT55_RS03800	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT55_RS03835	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS03835	PWY-6606	guanosine nucleotides degradation II
APT55_RS03835	PWY-6608	guanosine nucleotides degradation III
APT55_RS03835	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT55_RS03855	PWY-5386	methylglyoxal degradation I
APT55_RS03970	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
APT55_RS03970	PWY-6853	ethylene biosynthesis II (microbes)
APT55_RS03970	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT55_RS04020	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT55_RS04030	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT55_RS04075	PWY-5686	UMP biosynthesis
APT55_RS04230	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
APT55_RS04255	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT55_RS04255	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT55_RS04255	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT55_RS04255	PWY-6113	superpathway of mycolate biosynthesis
APT55_RS04255	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT55_RS04255	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT55_RS04255	PWY-7663	gondoate biosynthesis (anaerobic)
APT55_RS04255	PWY-7664	oleate biosynthesis IV (anaerobic)
APT55_RS04255	PWYG-321	mycolate biosynthesis
APT55_RS04280	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT55_RS04405	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APT55_RS04465	PWY-5344	L-homocysteine biosynthesis
APT55_RS04470	PWY-381	nitrate reduction II (assimilatory)
APT55_RS04470	PWY-5675	nitrate reduction V (assimilatory)
APT55_RS04470	PWY-6549	L-glutamine biosynthesis III
APT55_RS04470	PWY-6963	ammonia assimilation cycle I
APT55_RS04470	PWY-6964	ammonia assimilation cycle II
APT55_RS04525	PWY-3341	L-proline biosynthesis III
APT55_RS04525	PWY-4981	L-proline biosynthesis II (from arginine)
APT55_RS04525	PWY-6344	L-ornithine degradation II (Stickland reaction)
APT55_RS04540	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT55_RS04550	PWY-3841	folate transformations II
APT55_RS04550	PWY-6614	tetrahydrofolate biosynthesis
APT55_RS04565	PWY-6703	preQ<sub>0</sub> biosynthesis
APT55_RS04765	PWY-4061	glutathione-mediated detoxification I
APT55_RS04765	PWY-6842	glutathione-mediated detoxification II
APT55_RS04765	PWY-7112	4-hydroxy-2-nonenal detoxification
APT55_RS04765	PWY-7533	gliotoxin biosynthesis
APT55_RS04850	PWY-5269	cardiolipin biosynthesis II
APT55_RS04850	PWY-5668	cardiolipin biosynthesis I
APT55_RS04895	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT55_RS04895	PWY-5723	Rubisco shunt
APT55_RS04995	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APT55_RS05045	PWY-5958	acridone alkaloid biosynthesis
APT55_RS05045	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT55_RS05045	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT55_RS05070	PWY-5941	glycogen degradation II (eukaryotic)
APT55_RS05070	PWY-6724	starch degradation II
APT55_RS05070	PWY-6737	starch degradation V
APT55_RS05070	PWY-7238	sucrose biosynthesis II
APT55_RS05075	PWY-2622	trehalose biosynthesis IV
APT55_RS05140	PWY-6749	CMP-legionaminate biosynthesis I
APT55_RS05145	PWY-6703	preQ<sub>0</sub> biosynthesis
APT55_RS05195	PWY-5530	sorbitol biosynthesis II
APT55_RS05210	PWY-1622	formaldehyde assimilation I (serine pathway)
APT55_RS05210	PWY-5392	reductive TCA cycle II
APT55_RS05210	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT55_RS05210	PWY-5690	TCA cycle II (plants and fungi)
APT55_RS05210	PWY-5913	TCA cycle VI (obligate autotrophs)
APT55_RS05210	PWY-6728	methylaspartate cycle
APT55_RS05210	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT55_RS05210	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT55_RS05210	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT55_RS05225	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT55_RS05225	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT55_RS05260	PWY-5506	methanol oxidation to formaldehyde IV
APT55_RS05275	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS05275	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS05285	PWY-101	photosynthesis light reactions
APT55_RS05440	PWY-6829	tRNA methylation (yeast)
APT55_RS05440	PWY-6965	methylamine degradation II
APT55_RS05545	PWY-5386	methylglyoxal degradation I
APT55_RS05605	PWY-2201	folate transformations I
APT55_RS05715	PWY-5532	adenosine nucleotides degradation IV
APT55_RS05715	PWY-5723	Rubisco shunt
APT55_RS05760	PWY-3781	aerobic respiration I (cytochrome c)
APT55_RS05760	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APT55_RS05760	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT55_RS05760	PWY-6692	Fe(II) oxidation
APT55_RS05840	PWY-6123	inosine-5'-phosphate biosynthesis I
APT55_RS05840	PWY-6124	inosine-5'-phosphate biosynthesis II
APT55_RS05840	PWY-7234	inosine-5'-phosphate biosynthesis III
APT55_RS05850	PWY-2201	folate transformations I
APT55_RS05850	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS05855	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT55_RS05855	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT55_RS05855	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT55_RS05855	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT55_RS05855	PWY-6113	superpathway of mycolate biosynthesis
APT55_RS05855	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT55_RS05855	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT55_RS05855	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT55_RS05855	PWY-7663	gondoate biosynthesis (anaerobic)
APT55_RS05855	PWY-7664	oleate biosynthesis IV (anaerobic)
APT55_RS05855	PWYG-321	mycolate biosynthesis
APT55_RS05865	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS05865	PWY-622	starch biosynthesis
APT55_RS05885	PWY-3781	aerobic respiration I (cytochrome c)
APT55_RS05885	PWY-4521	arsenite oxidation I (respiratory)
APT55_RS05885	PWY-6692	Fe(II) oxidation
APT55_RS05885	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT55_RS06665	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT55_RS06665	PWY-5057	L-valine degradation II
APT55_RS06665	PWY-5076	L-leucine degradation III
APT55_RS06665	PWY-5078	L-isoleucine degradation II
APT55_RS06665	PWY-5079	L-phenylalanine degradation III
APT55_RS06665	PWY-5082	L-methionine degradation III
APT55_RS06665	PWY-5480	pyruvate fermentation to ethanol I
APT55_RS06665	PWY-5486	pyruvate fermentation to ethanol II
APT55_RS06665	PWY-5751	phenylethanol biosynthesis
APT55_RS06665	PWY-6313	serotonin degradation
APT55_RS06665	PWY-6333	acetaldehyde biosynthesis I
APT55_RS06665	PWY-6342	noradrenaline and adrenaline degradation
APT55_RS06665	PWY-6587	pyruvate fermentation to ethanol III
APT55_RS06665	PWY-6802	salidroside biosynthesis
APT55_RS06665	PWY-6871	3-methylbutanol biosynthesis
APT55_RS06665	PWY-7013	L-1,2-propanediol degradation
APT55_RS06665	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT55_RS06665	PWY-7118	chitin degradation to ethanol
APT55_RS06665	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT55_RS06720	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT55_RS06870	PWY-2201	folate transformations I
APT55_RS06870	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS06870	PWY-6167	flavin biosynthesis II (archaea)
APT55_RS06895	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT55_RS06895	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT55_RS06895	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT55_RS06900	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT55_RS06900	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT55_RS06900	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT55_RS06905	PWY-101	photosynthesis light reactions
APT55_RS06950	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT55_RS07010	PWY-6936	seleno-amino acid biosynthesis
APT55_RS07020	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
APT55_RS07020	PWY-581	indole-3-acetate biosynthesis II
APT55_RS07020	PWY-7308	acrylonitrile degradation I
APT55_RS07025	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
APT55_RS07025	PWY-581	indole-3-acetate biosynthesis II
APT55_RS07025	PWY-7308	acrylonitrile degradation I
APT55_RS07030	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
APT55_RS07030	PWY-581	indole-3-acetate biosynthesis II
APT55_RS07030	PWY-7308	acrylonitrile degradation I
APT55_RS07065	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT55_RS07065	PWY-6416	quinate degradation II
APT55_RS07065	PWY-6707	gallate biosynthesis
APT55_RS07170	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS07170	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT55_RS07170	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT55_RS07170	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS07190	PWY-5663	tetrahydrobiopterin biosynthesis I
APT55_RS07190	PWY-5664	tetrahydrobiopterin biosynthesis II
APT55_RS07190	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT55_RS07190	PWY-6703	preQ<sub>0</sub> biosynthesis
APT55_RS07190	PWY-6983	tetrahydrobiopterin biosynthesis III
APT55_RS07190	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT55_RS07200	PWY-4381	fatty acid biosynthesis initiation I
APT55_RS07200	PWY-5743	3-hydroxypropanoate cycle
APT55_RS07200	PWY-5744	glyoxylate assimilation
APT55_RS07200	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT55_RS07200	PWY-6679	jadomycin biosynthesis
APT55_RS07200	PWY-6722	candicidin biosynthesis
APT55_RS07200	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT55_RS07225	PWY-6622	heptadecane biosynthesis
APT55_RS07225	PWY-7032	alkane biosynthesis I
APT55_RS07230	PWY-282	cuticular wax biosynthesis
APT55_RS07230	PWY-6622	heptadecane biosynthesis
APT55_RS07230	PWY-7032	alkane biosynthesis I
APT55_RS07270	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT55_RS07270	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT55_RS07315	PWY-5663	tetrahydrobiopterin biosynthesis I
APT55_RS07315	PWY-5664	tetrahydrobiopterin biosynthesis II
APT55_RS07315	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT55_RS07315	PWY-6703	preQ<sub>0</sub> biosynthesis
APT55_RS07315	PWY-6983	tetrahydrobiopterin biosynthesis III
APT55_RS07315	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT55_RS07330	PWY-5532	adenosine nucleotides degradation IV
APT55_RS07330	PWY-5723	Rubisco shunt
APT55_RS07350	PWY-5704	urea degradation II
APT55_RS07355	PWY-5704	urea degradation II
APT55_RS07455	PWY-2201	folate transformations I
APT55_RS07455	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS07455	PWY-6167	flavin biosynthesis II (archaea)
APT55_RS07475	PWY-3781	aerobic respiration I (cytochrome c)
APT55_RS07475	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APT55_RS07475	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT55_RS07475	PWY-5690	TCA cycle II (plants and fungi)
APT55_RS07475	PWY-6728	methylaspartate cycle
APT55_RS07475	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT55_RS07475	PWY-7254	TCA cycle VII (acetate-producers)
APT55_RS07475	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT55_RS07575	PWY-6167	flavin biosynthesis II (archaea)
APT55_RS07575	PWY-6168	flavin biosynthesis III (fungi)
APT55_RS07575	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS07695	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT55_RS07695	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APT55_RS07695	PWY-7242	D-fructuronate degradation
APT55_RS07695	PWY-7310	D-glucosaminate degradation
APT55_RS07695	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APT55_RS07710	PWY-5747	2-methylcitrate cycle II
APT55_RS07760	PWY-6891	thiazole biosynthesis II (Bacillus)
APT55_RS07760	PWY-6892	thiazole biosynthesis I (E. coli)
APT55_RS07760	PWY-7560	methylerythritol phosphate pathway II
APT55_RS07810	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT55_RS07810	PWY-6416	quinate degradation II
APT55_RS07810	PWY-6707	gallate biosynthesis
APT55_RS07840	PWY-5482	pyruvate fermentation to acetate II
APT55_RS07840	PWY-5485	pyruvate fermentation to acetate IV
APT55_RS07840	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS07890	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APT55_RS07915	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS07915	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS07915	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS07915	PWY-7003	glycerol degradation to butanol
APT55_RS07950	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT55_RS07950	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS07950	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT55_RS07950	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT55_RS08040	PWY-7183	pyrimidine nucleobases salvage I
APT55_RS08080	PWY-5169	cyanurate degradation
APT55_RS08080	PWY-5703	urea degradation I
APT55_RS08110	PWY-381	nitrate reduction II (assimilatory)
APT55_RS08110	PWY-5675	nitrate reduction V (assimilatory)
APT55_RS08110	PWY-6549	L-glutamine biosynthesis III
APT55_RS08110	PWY-6963	ammonia assimilation cycle I
APT55_RS08110	PWY-6964	ammonia assimilation cycle II
APT55_RS08130	PWY-6829	tRNA methylation (yeast)
APT55_RS08130	PWY-7285	methylwyosine biosynthesis
APT55_RS08130	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
APT55_RS08135	PWY-7052	cyanophycin metabolism
APT55_RS08140	PWY-7052	cyanophycin metabolism
APT55_RS08175	PWY-4981	L-proline biosynthesis II (from arginine)
APT55_RS08175	PWY-4984	urea cycle
APT55_RS08175	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT55_RS08195	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT55_RS08230	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT55_RS08230	PWY-5686	UMP biosynthesis
APT55_RS08230	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT55_RS08300	PWY-6605	adenine and adenosine salvage II
APT55_RS08300	PWY-6610	adenine and adenosine salvage IV
APT55_RS08305	PWY-6823	molybdenum cofactor biosynthesis
APT55_RS08405	PWY-6854	ethylene biosynthesis III (microbes)
APT55_RS08525	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT55_RS08525	PWY-6578	8-amino-7-oxononanoate biosynthesis III
APT55_RS08525	PWY-7147	8-amino-7-oxononanoate biosynthesis II
APT55_RS08595	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS08680	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS08680	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS08690	PWY-6823	molybdenum cofactor biosynthesis
APT55_RS08690	PWY-6891	thiazole biosynthesis II (Bacillus)
APT55_RS08690	PWY-6892	thiazole biosynthesis I (E. coli)
APT55_RS08690	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT55_RS08720	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT55_RS08720	PWY-6148	tetrahydromethanopterin biosynthesis
APT55_RS08720	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APT55_RS08720	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT55_RS08760	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS08760	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT55_RS08760	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS08760	PWY-5723	Rubisco shunt
APT55_RS08760	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS08760	PWY-6886	1-butanol autotrophic biosynthesis
APT55_RS08760	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS08760	PWY-7003	glycerol degradation to butanol
APT55_RS08760	PWY-7124	ethylene biosynthesis V (engineered)
APT55_RS08760	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT55_RS08805	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT55_RS08805	PWY-7205	CMP phosphorylation
APT55_RS08880	PWY-6854	ethylene biosynthesis III (microbes)
APT55_RS08885	PWY-7294	xylose degradation IV
APT55_RS08885	PWY-7295	L-arabinose degradation IV
APT55_RS08885	PWY-7560	methylerythritol phosphate pathway II
APT55_RS08930	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS08930	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS09335	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT55_RS09335	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT55_RS09335	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT55_RS09340	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT55_RS09340	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT55_RS09340	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT55_RS09340	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT55_RS09355	PWY-3121	linamarin degradation
APT55_RS09355	PWY-5176	coumarin biosynthesis (via 2-coumarate)
APT55_RS09355	PWY-6002	lotaustralin degradation
APT55_RS09355	PWY-6788	cellulose degradation II (fungi)
APT55_RS09355	PWY-7089	taxiphyllin bioactivation
APT55_RS09355	PWY-7091	linustatin bioactivation
APT55_RS09355	PWY-7092	neolinustatin bioactivation
APT55_RS09380	PWY-5443	aminopropanol phosphate biosynthesis I
APT55_RS09430	PWY-3781	aerobic respiration I (cytochrome c)
APT55_RS09430	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APT55_RS09430	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT55_RS09430	PWY-5690	TCA cycle II (plants and fungi)
APT55_RS09430	PWY-6728	methylaspartate cycle
APT55_RS09430	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT55_RS09430	PWY-7254	TCA cycle VII (acetate-producers)
APT55_RS09430	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT55_RS09455	PWY-5316	nicotine biosynthesis
APT55_RS09455	PWY-7342	superpathway of nicotine biosynthesis
APT55_RS09665	PWY-5723	Rubisco shunt
APT55_RS09805	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS09805	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS09805	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS10080	PWY-6523	nitrite-dependent anaerobic methane oxidation
APT55_RS10080	PWY-6748	nitrate reduction VII (denitrification)
APT55_RS10080	PWY-7084	nitrifier denitrification
APT55_RS10125	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS10125	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS10125	PWY-6886	1-butanol autotrophic biosynthesis
APT55_RS10125	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS10125	PWY-7003	glycerol degradation to butanol
APT55_RS10205	PWY-2201	folate transformations I
APT55_RS10205	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT55_RS10265	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
APT55_RS10425	PWY-3781	aerobic respiration I (cytochrome c)
APT55_RS10425	PWY-4521	arsenite oxidation I (respiratory)
APT55_RS10425	PWY-6692	Fe(II) oxidation
APT55_RS10425	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT55_RS10455	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS10455	PWY-622	starch biosynthesis
APT55_RS10470	PWY-6749	CMP-legionaminate biosynthesis I
APT55_RS10475	PWY-5941	glycogen degradation II (eukaryotic)
APT55_RS10475	PWY-6731	starch degradation III
APT55_RS10475	PWY-6737	starch degradation V
APT55_RS10475	PWY-7238	sucrose biosynthesis II
APT55_RS10540	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT55_RS10540	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT55_RS10565	PWY-2722	trehalose degradation IV
APT55_RS10565	PWY-2723	trehalose degradation V
APT55_RS10565	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT55_RS10565	PWY-5661	GDP-glucose biosynthesis
APT55_RS10565	PWY-621	sucrose degradation III (sucrose invertase)
APT55_RS10565	PWY-7238	sucrose biosynthesis II
APT55_RS10565	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT55_RS10570	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT55_RS10570	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT55_RS11000	PWY-6683	sulfate reduction III (assimilatory)
APT55_RS11080	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT55_RS11080	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT55_RS11080	PWY-6896	thiamin salvage I
APT55_RS11080	PWY-6897	thiamin salvage II
APT55_RS11220	PWY-2941	L-lysine biosynthesis II
APT55_RS11220	PWY-2942	L-lysine biosynthesis III
APT55_RS11220	PWY-5097	L-lysine biosynthesis VI
APT55_RS11245	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT55_RS11250	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS11360	PWY-6700	queuosine biosynthesis
APT55_RS11385	PWY-622	starch biosynthesis
APT55_RS11570	PWY-3781	aerobic respiration I (cytochrome c)
APT55_RS11570	PWY-4521	arsenite oxidation I (respiratory)
APT55_RS11570	PWY-6692	Fe(II) oxidation
APT55_RS11570	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT55_RS11600	PWY-3081	L-lysine biosynthesis V
APT55_RS11600	PWY-6871	3-methylbutanol biosynthesis
APT55_RS11600	PWY-7710	APT55_RS11600
APT55_RS11625	PWY-6823	molybdenum cofactor biosynthesis
APT55_RS11625	PWY-6891	thiazole biosynthesis II (Bacillus)
APT55_RS11625	PWY-6892	thiazole biosynthesis I (E. coli)
APT55_RS11625	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT55_RS11635	PWY-6823	molybdenum cofactor biosynthesis
APT55_RS11640	PWY-6936	seleno-amino acid biosynthesis
APT55_RS11640	PWY-7274	D-cycloserine biosynthesis
APT55_RS11755	PWY-5480	pyruvate fermentation to ethanol I
APT55_RS11755	PWY-5485	pyruvate fermentation to acetate IV
APT55_RS11755	PWY-5493	reductive monocarboxylic acid cycle
APT55_RS11765	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT55_RS11765	PWY-5057	L-valine degradation II
APT55_RS11765	PWY-5076	L-leucine degradation III
APT55_RS11765	PWY-5078	L-isoleucine degradation II
APT55_RS11765	PWY-5079	L-phenylalanine degradation III
APT55_RS11765	PWY-5082	L-methionine degradation III
APT55_RS11765	PWY-5162	2-oxopentenoate degradation
APT55_RS11765	PWY-5436	L-threonine degradation IV
APT55_RS11765	PWY-5480	pyruvate fermentation to ethanol I
APT55_RS11765	PWY-5486	pyruvate fermentation to ethanol II
APT55_RS11765	PWY-5751	phenylethanol biosynthesis
APT55_RS11765	PWY-6313	serotonin degradation
APT55_RS11765	PWY-6333	acetaldehyde biosynthesis I
APT55_RS11765	PWY-6342	noradrenaline and adrenaline degradation
APT55_RS11765	PWY-6587	pyruvate fermentation to ethanol III
APT55_RS11765	PWY-6802	salidroside biosynthesis
APT55_RS11765	PWY-6871	3-methylbutanol biosynthesis
APT55_RS11765	PWY-7013	L-1,2-propanediol degradation
APT55_RS11765	PWY-7085	triethylamine degradation
APT55_RS11765	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT55_RS11765	PWY-7118	chitin degradation to ethanol
APT55_RS11765	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
APT55_RS11765	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT55_RS11770	PWY-5392	reductive TCA cycle II
APT55_RS11770	PWY-5537	pyruvate fermentation to acetate V
APT55_RS11770	PWY-5538	pyruvate fermentation to acetate VI
APT55_RS11770	PWY-5690	TCA cycle II (plants and fungi)
APT55_RS11770	PWY-5913	TCA cycle VI (obligate autotrophs)
APT55_RS11770	PWY-6728	methylaspartate cycle
APT55_RS11770	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT55_RS11770	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT55_RS11925	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
APT55_RS11955	PWY-6823	molybdenum cofactor biosynthesis
APT55_RS11955	PWY-6891	thiazole biosynthesis II (Bacillus)
APT55_RS11955	PWY-6892	thiazole biosynthesis I (E. coli)
APT55_RS11955	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT55_RS11970	PWY-101	photosynthesis light reactions
APT55_RS11990	PWY-5194	siroheme biosynthesis
APT55_RS11990	PWY-5441	S-methyl-L-methionine cycle
APT55_RS11990	PWY-702	L-methionine biosynthesis II
APT55_RS11990	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT55_RS11995	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT55_RS11995	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT55_RS12000	PWY-6167	flavin biosynthesis II (archaea)
APT55_RS12000	PWY-6168	flavin biosynthesis III (fungi)
APT55_RS12000	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT55_RS12010	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT55_RS12010	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT55_RS12010	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT55_RS12095	PWY-6683	sulfate reduction III (assimilatory)
APT55_RS12200	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT55_RS12200	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT55_RS12200	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT55_RS12200	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS12200	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APT55_RS12200	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT55_RS12200	PWY-7205	CMP phosphorylation
APT55_RS12200	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT55_RS12200	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS12200	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS12200	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS12200	PWY-7224	purine deoxyribonucleosides salvage
APT55_RS12200	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT55_RS12200	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT55_RS12205	PWY-40	putrescine biosynthesis I
APT55_RS12205	PWY-43	putrescine biosynthesis II
APT55_RS12205	PWY-6305	putrescine biosynthesis IV
APT55_RS12205	PWY-6834	spermidine biosynthesis III
APT55_RS12305	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
APT55_RS12355	PWY-5103	L-isoleucine biosynthesis III
APT55_RS12355	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT55_RS12420	PWY-5532	adenosine nucleotides degradation IV
APT55_RS12420	PWY-5723	Rubisco shunt
APT55_RS12430	PWY-5532	adenosine nucleotides degradation IV
APT55_RS12430	PWY-5723	Rubisco shunt
APT55_RS12460	PWY-5839	menaquinol-7 biosynthesis
APT55_RS12460	PWY-5844	menaquinol-9 biosynthesis
APT55_RS12460	PWY-5849	menaquinol-6 biosynthesis
APT55_RS12460	PWY-5890	menaquinol-10 biosynthesis
APT55_RS12460	PWY-5891	menaquinol-11 biosynthesis
APT55_RS12460	PWY-5892	menaquinol-12 biosynthesis
APT55_RS12460	PWY-5895	menaquinol-13 biosynthesis
APT55_RS12580	PWY-5958	acridone alkaloid biosynthesis
APT55_RS12580	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT55_RS12580	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT55_RS12585	PWY-7039	phosphatidate metabolism, as a signaling molecule
APT55_RS12885	PWY-3801	sucrose degradation II (sucrose synthase)
APT55_RS12940	PWY-101	photosynthesis light reactions
APT55_RS12945	PWY-101	photosynthesis light reactions
APT55_RS12975	PWY-6936	seleno-amino acid biosynthesis
APT55_RS13135	PWY-4061	glutathione-mediated detoxification I
APT55_RS13135	PWY-6842	glutathione-mediated detoxification II
APT55_RS13135	PWY-7112	4-hydroxy-2-nonenal detoxification
APT55_RS13135	PWY-7533	gliotoxin biosynthesis
APT55_RS13185	PWY-3821	galactose degradation III
APT55_RS13185	PWY-6317	galactose degradation I (Leloir pathway)
APT55_RS13185	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT55_RS13185	PWY-6527	stachyose degradation
APT55_RS13185	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT55_RS13185	PWY-7344	UDP-D-galactose biosynthesis
APT55_RS13245	PWY-6823	molybdenum cofactor biosynthesis
APT55_RS13260	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT55_RS13260	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT55_RS13260	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS13260	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
APT55_RS13295	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS13295	PWY-622	starch biosynthesis
APT55_RS13325	PWY-5278	sulfite oxidation III
APT55_RS13325	PWY-5340	sulfate activation for sulfonation
APT55_RS13325	PWY-6683	sulfate reduction III (assimilatory)
APT55_RS13325	PWY-6932	selenate reduction
APT55_RS13355	PWY-5686	UMP biosynthesis
APT55_RS13560	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
APT55_RS13560	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
APT55_RS13560	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
APT55_RS13560	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
APT55_RS13560	PWY-6978	plastoquinol-9 biosynthesis II
APT55_RS13585	PWY-6004	glycine betaine biosynthesis V (from glycine)
APT55_RS13660	PWY-5101	L-isoleucine biosynthesis II
APT55_RS13660	PWY-5103	L-isoleucine biosynthesis III
APT55_RS13660	PWY-5104	L-isoleucine biosynthesis IV
APT55_RS13660	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT55_RS13905	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT55_RS13905	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT55_RS13925	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT55_RS13925	PWY-5723	Rubisco shunt
APT55_RS13995	PWY-6700	queuosine biosynthesis
APT55_RS14005	PWY-6700	queuosine biosynthesis
APT55_RS14045	PWY-6910	hydroxymethylpyrimidine salvage
APT55_RS14045	PWY-7356	thiamin salvage IV (yeast)
APT55_RS14045	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT55_RS14205	PWY-6854	ethylene biosynthesis III (microbes)
APT55_RS14215	PWY-6807	xyloglucan degradation II (exoglucanase)
APT55_RS14290	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT55_RS14305	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT55_RS14315	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT55_RS14315	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT55_RS14430	PWY-2201	folate transformations I
APT55_RS14430	PWY-3841	folate transformations II
APT55_RS14490	PWY-3221	dTDP-L-rhamnose biosynthesis II
APT55_RS14490	PWY-6808	dTDP-D-forosamine biosynthesis
APT55_RS14490	PWY-6942	dTDP-D-desosamine biosynthesis
APT55_RS14490	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APT55_RS14490	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APT55_RS14490	PWY-6974	dTDP-L-olivose biosynthesis
APT55_RS14490	PWY-6976	dTDP-L-mycarose biosynthesis
APT55_RS14490	PWY-7104	dTDP-L-megosamine biosynthesis
APT55_RS14490	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APT55_RS14490	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APT55_RS14490	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APT55_RS14490	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APT55_RS14490	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APT55_RS14490	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APT55_RS14490	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APT55_RS14490	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APT55_RS14490	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APT55_RS14490	PWY-7688	APT55_RS14490
APT55_RS14510	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS14510	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS14755	PWY-4041	&gamma;-glutamyl cycle
APT55_RS14755	PWY-5826	hypoglycin biosynthesis
APT55_RS14765	PWY-4041	&gamma;-glutamyl cycle
APT55_RS14765	PWY-5826	hypoglycin biosynthesis
APT55_RS14775	PWY-3341	L-proline biosynthesis III
APT55_RS14775	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT55_RS14780	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS14780	PWY-622	starch biosynthesis
APT55_RS14790	PWY-7183	pyrimidine nucleobases salvage I
APT55_RS14795	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
APT55_RS14795	PWY-6174	mevalonate pathway II (archaea)
APT55_RS14795	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
APT55_RS14795	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
APT55_RS14795	PWY-7102	bisabolene biosynthesis
APT55_RS14795	PWY-7391	isoprene biosynthesis II (engineered)
APT55_RS14795	PWY-7524	mevalonate pathway III (archaea)
APT55_RS14795	PWY-7560	methylerythritol phosphate pathway II
APT55_RS14795	PWY-922	mevalonate pathway I
APT55_RS14835	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APT55_RS14835	PWY-2201	folate transformations I
APT55_RS14835	PWY-3841	folate transformations II
APT55_RS14835	PWY-5030	L-histidine degradation III
APT55_RS14835	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS14835	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APT55_RS14900	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT55_RS14900	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT55_RS14900	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS14900	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APT55_RS14900	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT55_RS14900	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT55_RS14995	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
APT55_RS14995	PWY-5739	GDP-D-perosamine biosynthesis
APT55_RS14995	PWY-5740	GDP-L-colitose biosynthesis
APT55_RS14995	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
APT55_RS14995	PWY-7573	GDP-mycosamine biosynthesis
APT55_RS15045	PWY-101	photosynthesis light reactions
APT55_RS15130	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT55_RS15130	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT55_RS15185	PWY-5316	nicotine biosynthesis
APT55_RS15185	PWY-5381	pyridine nucleotide cycling (plants)
APT55_RS15185	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APT55_RS15185	PWY-7342	superpathway of nicotine biosynthesis
APT55_RS15360	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS15360	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS15385	PWY-5386	methylglyoxal degradation I
APT55_RS15525	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APT55_RS15655	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT55_RS15655	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT55_RS16020	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT55_RS16075	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS16075	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS16160	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT55_RS16160	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT55_RS16160	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APT55_RS16170	PWY-5169	cyanurate degradation
APT55_RS16170	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT55_RS16185	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT55_RS16185	PWY-6416	quinate degradation II
APT55_RS16185	PWY-6707	gallate biosynthesis
APT55_RS16195	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS16195	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT55_RS16195	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS16200	PWY-1622	formaldehyde assimilation I (serine pathway)
APT55_RS16200	PWY-181	photorespiration
APT55_RS16200	PWY-2161	folate polyglutamylation
APT55_RS16200	PWY-2201	folate transformations I
APT55_RS16200	PWY-3661	glycine betaine degradation I
APT55_RS16200	PWY-3661-1	glycine betaine degradation II (mammalian)
APT55_RS16200	PWY-3841	folate transformations II
APT55_RS16200	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS16210	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT55_RS16210	PWY-5667	CDP-diacylglycerol biosynthesis I
APT55_RS16210	PWY-6453	stigma estolide biosynthesis
APT55_RS16210	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APT55_RS16210	PWY-7587	oleate biosynthesis III (cyanobacteria)
APT55_RS16225	PWY-5101	L-isoleucine biosynthesis II
APT55_RS16225	PWY-5103	L-isoleucine biosynthesis III
APT55_RS16225	PWY-5104	L-isoleucine biosynthesis IV
APT55_RS16225	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT55_RS16225	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT55_RS16225	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT55_RS16225	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT55_RS16310	PWY-3461	L-tyrosine biosynthesis II
APT55_RS16310	PWY-3462	L-phenylalanine biosynthesis II
APT55_RS16310	PWY-6120	L-tyrosine biosynthesis III
APT55_RS16310	PWY-6627	salinosporamide A biosynthesis
APT55_RS16310	PWY-7626	bacilysin biosynthesis
APT55_RS16405	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT55_RS16405	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT55_RS16405	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APT55_RS16425	PWY-7294	xylose degradation IV
APT55_RS16425	PWY-7295	L-arabinose degradation IV
APT55_RS16435	PWY-2941	L-lysine biosynthesis II
APT55_RS16435	PWY-5097	L-lysine biosynthesis VI
APT55_RS16480	PWY-7560	methylerythritol phosphate pathway II
APT55_RS16495	PWY-5958	acridone alkaloid biosynthesis
APT55_RS16495	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT55_RS16495	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT55_RS16515	PWY-5667	CDP-diacylglycerol biosynthesis I
APT55_RS16515	PWY-5981	CDP-diacylglycerol biosynthesis III
APT55_RS16520	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT55_RS16520	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT55_RS16570	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
APT55_RS16620	PWY-5659	GDP-mannose biosynthesis
APT55_RS16620	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APT55_RS16660	PWY-2941	L-lysine biosynthesis II
APT55_RS16660	PWY-2942	L-lysine biosynthesis III
APT55_RS16660	PWY-5097	L-lysine biosynthesis VI
APT55_RS16665	PWY-2941	L-lysine biosynthesis II
APT55_RS16665	PWY-2942	L-lysine biosynthesis III
APT55_RS16665	PWY-5097	L-lysine biosynthesis VI
APT55_RS16665	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT55_RS16665	PWY-6559	spermidine biosynthesis II
APT55_RS16665	PWY-6562	norspermidine biosynthesis
APT55_RS16665	PWY-7153	grixazone biosynthesis
APT55_RS16665	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT55_RS16690	PWY-5198	factor 420 biosynthesis
APT55_RS16705	PWY-101	photosynthesis light reactions
APT55_RS16725	PWY-3461	L-tyrosine biosynthesis II
APT55_RS16725	PWY-3462	L-phenylalanine biosynthesis II
APT55_RS16725	PWY-6120	L-tyrosine biosynthesis III
APT55_RS16725	PWY-6406	salicylate biosynthesis I
APT55_RS16725	PWY-6627	salinosporamide A biosynthesis
APT55_RS16725	PWY-7626	bacilysin biosynthesis
APT55_RS16730	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT55_RS16730	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT55_RS16735	PWY-6825	phosphatidylcholine biosynthesis V
APT55_RS16755	PWY-5068	chlorophyll cycle
APT55_RS16755	PWY-5086	chlorophyll <i>a</i> biosynthesis I
APT55_RS16780	PWY-6123	inosine-5'-phosphate biosynthesis I
APT55_RS16780	PWY-6124	inosine-5'-phosphate biosynthesis II
APT55_RS16780	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS16780	PWY-7234	inosine-5'-phosphate biosynthesis III
APT55_RS16810	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS16810	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT55_RS16810	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS16870	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
APT55_RS16870	PWY-5368	dimorphecolate biosynthesis
APT55_RS16870	PWY-5995	linoleate biosynthesis I (plants)
APT55_RS16870	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
APT55_RS16870	PWY-6803	phosphatidylcholine acyl editing
APT55_RS16870	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
APT55_RS16870	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APT55_RS16870	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APT55_RS16870	PWY-7470	phosphatidylcholine biosynthesis VII
APT55_RS16870	PWY-7618	ricinoleate biosynthesis
APT55_RS17035	PWY-5198	factor 420 biosynthesis
APT55_RS17120	PWY-6700	queuosine biosynthesis
APT55_RS17380	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT55_RS17560	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT55_RS17560	PWY-6855	chitin degradation I (archaea)
APT55_RS17560	PWY-6906	chitin derivatives degradation
APT55_RS17590	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT55_RS17615	PWY-5101	L-isoleucine biosynthesis II
APT55_RS17615	PWY-6871	3-methylbutanol biosynthesis
APT55_RS17635	PWY-6891	thiazole biosynthesis II (Bacillus)
APT55_RS17635	PWY-6892	thiazole biosynthesis I (E. coli)
APT55_RS17675	PWY-6832	2-aminoethylphosphonate degradation II
APT55_RS17700	PWY-1281	sulfoacetaldehyde degradation I
APT55_RS17700	PWY-5482	pyruvate fermentation to acetate II
APT55_RS17700	PWY-5485	pyruvate fermentation to acetate IV
APT55_RS17700	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS17700	PWY-6637	sulfolactate degradation II
APT55_RS17745	PWY-6825	phosphatidylcholine biosynthesis V
APT55_RS17790	PWY-5057	L-valine degradation II
APT55_RS17790	PWY-5076	L-leucine degradation III
APT55_RS17790	PWY-5078	L-isoleucine degradation II
APT55_RS17790	PWY-5101	L-isoleucine biosynthesis II
APT55_RS17790	PWY-5103	L-isoleucine biosynthesis III
APT55_RS17790	PWY-5104	L-isoleucine biosynthesis IV
APT55_RS17790	PWY-5108	L-isoleucine biosynthesis V
APT55_RS17880	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT55_RS17880	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT55_RS17880	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APT55_RS17895	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS17945	PWY-2781	<i>cis</i>-zeatin biosynthesis
APT55_RS18230	PWY-5686	UMP biosynthesis
APT55_RS18235	PWY-6475	<i>trans</i>-lycopene biosynthesis II (plants)
APT55_RS18305	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APT55_RS18305	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT55_RS18305	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT55_RS18320	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT55_RS18325	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APT55_RS18325	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT55_RS18325	PWY-6268	adenosylcobalamin salvage from cobalamin
APT55_RS18325	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT55_RS18370	PWY-5532	adenosine nucleotides degradation IV
APT55_RS18370	PWY-5723	Rubisco shunt
APT55_RS18590	PWY-6938	NADH repair
APT55_RS18645	PWY-4261	glycerol degradation I
APT55_RS18675	PWY-381	nitrate reduction II (assimilatory)
APT55_RS18675	PWY-5675	nitrate reduction V (assimilatory)
APT55_RS18675	PWY-6549	L-glutamine biosynthesis III
APT55_RS18675	PWY-6963	ammonia assimilation cycle I
APT55_RS18675	PWY-6964	ammonia assimilation cycle II
APT55_RS18700	PWY-5392	reductive TCA cycle II
APT55_RS18700	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT55_RS18700	PWY-5690	TCA cycle II (plants and fungi)
APT55_RS18700	PWY-5913	TCA cycle VI (obligate autotrophs)
APT55_RS18700	PWY-6728	methylaspartate cycle
APT55_RS18700	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT55_RS18700	PWY-7254	TCA cycle VII (acetate-producers)
APT55_RS18700	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT55_RS18880	PWY-5686	UMP biosynthesis
APT55_RS18955	PWY-6123	inosine-5'-phosphate biosynthesis I
APT55_RS18955	PWY-6124	inosine-5'-phosphate biosynthesis II
APT55_RS18955	PWY-7234	inosine-5'-phosphate biosynthesis III
APT55_RS18965	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS18965	PWY-622	starch biosynthesis
APT55_RS18990	PWY-6614	tetrahydrofolate biosynthesis
APT55_RS19070	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APT55_RS19070	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
APT55_RS19075	PWY-6823	molybdenum cofactor biosynthesis
APT55_RS19110	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT55_RS19110	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT55_RS19110	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT55_RS19110	PWY-6936	seleno-amino acid biosynthesis
APT55_RS19110	PWY-702	L-methionine biosynthesis II
APT55_RS19125	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APT55_RS19125	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT55_RS19125	PWY-6268	adenosylcobalamin salvage from cobalamin
APT55_RS19125	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT55_RS19225	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT55_RS19230	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT55_RS19230	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT55_RS19230	PWY-5057	L-valine degradation II
APT55_RS19230	PWY-5076	L-leucine degradation III
APT55_RS19230	PWY-5078	L-isoleucine degradation II
APT55_RS19230	PWY-5079	L-phenylalanine degradation III
APT55_RS19230	PWY-5082	L-methionine degradation III
APT55_RS19230	PWY-5480	pyruvate fermentation to ethanol I
APT55_RS19230	PWY-5486	pyruvate fermentation to ethanol II
APT55_RS19230	PWY-5751	phenylethanol biosynthesis
APT55_RS19230	PWY-6313	serotonin degradation
APT55_RS19230	PWY-6333	acetaldehyde biosynthesis I
APT55_RS19230	PWY-6342	noradrenaline and adrenaline degradation
APT55_RS19230	PWY-6454	vancomycin resistance I
APT55_RS19230	PWY-6587	pyruvate fermentation to ethanol III
APT55_RS19230	PWY-6802	salidroside biosynthesis
APT55_RS19230	PWY-6871	3-methylbutanol biosynthesis
APT55_RS19230	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS19230	PWY-7013	L-1,2-propanediol degradation
APT55_RS19230	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT55_RS19230	PWY-7118	chitin degradation to ethanol
APT55_RS19230	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT55_RS19605	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT55_RS20030	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT55_RS20030	PWY-6416	quinate degradation II
APT55_RS20030	PWY-6707	gallate biosynthesis
APT55_RS20075	PWY-3341	L-proline biosynthesis III
APT55_RS20075	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT55_RS20110	PWY-5381	pyridine nucleotide cycling (plants)
APT55_RS20110	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT55_RS20110	PWY-6596	adenosine nucleotides degradation I
APT55_RS20110	PWY-6606	guanosine nucleotides degradation II
APT55_RS20110	PWY-6607	guanosine nucleotides degradation I
APT55_RS20110	PWY-6608	guanosine nucleotides degradation III
APT55_RS20110	PWY-7185	UTP and CTP dephosphorylation I
APT55_RS20115	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS20115	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT55_RS20115	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS20115	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT55_RS20135	PWY-6807	xyloglucan degradation II (exoglucanase)
APT55_RS20190	PWY-5392	reductive TCA cycle II
APT55_RS20190	PWY-5537	pyruvate fermentation to acetate V
APT55_RS20190	PWY-5538	pyruvate fermentation to acetate VI
APT55_RS20190	PWY-5690	TCA cycle II (plants and fungi)
APT55_RS20190	PWY-5913	TCA cycle VI (obligate autotrophs)
APT55_RS20190	PWY-6728	methylaspartate cycle
APT55_RS20190	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT55_RS20190	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT55_RS20195	PWY-5392	reductive TCA cycle II
APT55_RS20195	PWY-5537	pyruvate fermentation to acetate V
APT55_RS20195	PWY-5538	pyruvate fermentation to acetate VI
APT55_RS20195	PWY-5690	TCA cycle II (plants and fungi)
APT55_RS20195	PWY-5913	TCA cycle VI (obligate autotrophs)
APT55_RS20195	PWY-6728	methylaspartate cycle
APT55_RS20195	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT55_RS20195	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT55_RS20210	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT55_RS20215	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT55_RS20215	PWY-5723	Rubisco shunt
APT55_RS20220	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS20235	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS20235	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS20270	PWY-5917	phycocyanobilin biosynthesis
APT55_RS20270	PWY-7578	phycoviolobilin biosynthesis
APT55_RS20320	PWY-4261	glycerol degradation I
APT55_RS20365	PWY-6531	mannitol cycle
APT55_RS20570	PWY-5723	Rubisco shunt
APT55_RS20575	PWY-101	photosynthesis light reactions
APT55_RS20575	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APT55_RS20590	PWY-5481	pyruvate fermentation to lactate
APT55_RS20590	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
APT55_RS20590	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS20595	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
APT55_RS20595	PWY-5739	GDP-D-perosamine biosynthesis
APT55_RS20595	PWY-5740	GDP-L-colitose biosynthesis
APT55_RS20595	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
APT55_RS20595	PWY-7573	GDP-mycosamine biosynthesis
APT55_RS20635	PWY-5667	CDP-diacylglycerol biosynthesis I
APT55_RS20635	PWY-5981	CDP-diacylglycerol biosynthesis III
APT55_RS20635	PWY-6453	stigma estolide biosynthesis
APT55_RS20635	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APT55_RS20635	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
APT55_RS20635	PWY-7587	oleate biosynthesis III (cyanobacteria)
APT55_RS20635	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
APT55_RS20640	PWY-4381	fatty acid biosynthesis initiation I
APT55_RS20640	PWY-6799	fatty acid biosynthesis (plant mitochondria)
APT55_RS20640	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT55_RS20645	PWY-4381	fatty acid biosynthesis initiation I
APT55_RS20770	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT55_RS20770	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APT55_RS20865	PWY-381	nitrate reduction II (assimilatory)
APT55_RS20865	PWY-5675	nitrate reduction V (assimilatory)
APT55_RS20865	PWY-6549	L-glutamine biosynthesis III
APT55_RS20865	PWY-6963	ammonia assimilation cycle I
APT55_RS20865	PWY-6964	ammonia assimilation cycle II
APT55_RS20890	PWY-5381	pyridine nucleotide cycling (plants)
APT55_RS20890	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT55_RS20890	PWY-6596	adenosine nucleotides degradation I
APT55_RS20890	PWY-6606	guanosine nucleotides degradation II
APT55_RS20890	PWY-6607	guanosine nucleotides degradation I
APT55_RS20890	PWY-6608	guanosine nucleotides degradation III
APT55_RS20890	PWY-7185	UTP and CTP dephosphorylation I
APT55_RS20910	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS20910	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS20930	PWY-1622	formaldehyde assimilation I (serine pathway)
APT55_RS20930	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT55_RS20930	PWY-5913	TCA cycle VI (obligate autotrophs)
APT55_RS20930	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS20930	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
APT55_RS20930	PWY-6549	L-glutamine biosynthesis III
APT55_RS20930	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT55_RS20930	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT55_RS20930	PWY-7124	ethylene biosynthesis V (engineered)
APT55_RS20950	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APT55_RS21085	PWY-101	photosynthesis light reactions
APT55_RS21145	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT55_RS21145	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT55_RS21305	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS21305	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS21310	PWY-5316	nicotine biosynthesis
APT55_RS21310	PWY-7342	superpathway of nicotine biosynthesis
APT55_RS21335	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT55_RS21335	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
APT55_RS21470	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS21470	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS21525	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT55_RS21525	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT55_RS21525	PWY-6897	thiamin salvage II
APT55_RS21525	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APT55_RS21525	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APT55_RS21525	PWY-7356	thiamin salvage IV (yeast)
APT55_RS21525	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT55_RS21570	PWY-6902	chitin degradation II
APT55_RS21610	PWY-5097	L-lysine biosynthesis VI
APT55_RS21620	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS21620	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT55_RS21620	PWY-6538	caffeine degradation III (bacteria, via demethylation)
APT55_RS21620	PWY-6596	adenosine nucleotides degradation I
APT55_RS21620	PWY-6606	guanosine nucleotides degradation II
APT55_RS21620	PWY-6607	guanosine nucleotides degradation I
APT55_RS21620	PWY-6608	guanosine nucleotides degradation III
APT55_RS21620	PWY-6999	theophylline degradation
APT55_RS21625	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS21625	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT55_RS21625	PWY-6538	caffeine degradation III (bacteria, via demethylation)
APT55_RS21625	PWY-6596	adenosine nucleotides degradation I
APT55_RS21625	PWY-6606	guanosine nucleotides degradation II
APT55_RS21625	PWY-6607	guanosine nucleotides degradation I
APT55_RS21625	PWY-6608	guanosine nucleotides degradation III
APT55_RS21625	PWY-6999	theophylline degradation
APT55_RS21640	PWY-5691	urate degradation to allantoin I
APT55_RS21640	PWY-7394	urate degradation to allantoin II
APT55_RS21705	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS21705	PWY-1622	formaldehyde assimilation I (serine pathway)
APT55_RS21705	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT55_RS21705	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS21705	PWY-5723	Rubisco shunt
APT55_RS21705	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS21705	PWY-6886	1-butanol autotrophic biosynthesis
APT55_RS21705	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS21705	PWY-7003	glycerol degradation to butanol
APT55_RS21705	PWY-7124	ethylene biosynthesis V (engineered)
APT55_RS21705	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT55_RS21750	PWY-7238	sucrose biosynthesis II
APT55_RS21750	PWY-7347	sucrose biosynthesis III
APT55_RS21755	PWY-5941	glycogen degradation II (eukaryotic)
APT55_RS21755	PWY-6724	starch degradation II
APT55_RS21755	PWY-6737	starch degradation V
APT55_RS21755	PWY-7238	sucrose biosynthesis II
APT55_RS21800	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APT55_RS21800	PWY-6167	flavin biosynthesis II (archaea)
APT55_RS21800	PWY-6168	flavin biosynthesis III (fungi)
APT55_RS21815	PWY-5691	urate degradation to allantoin I
APT55_RS21815	PWY-7394	urate degradation to allantoin II
APT55_RS21925	PWY-2201	folate transformations I
APT55_RS21925	PWY-5497	purine nucleobases degradation II (anaerobic)
APT55_RS22350	PWY-6454	vancomycin resistance I
APT55_RS22350	PWY-6455	vancomycin resistance II
APT55_RS22435	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS22435	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT55_RS22435	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS22435	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS22435	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT55_RS22550	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
APT55_RS22575	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT55_RS22575	PWY-5723	Rubisco shunt
APT55_RS22575	PWY-6891	thiazole biosynthesis II (Bacillus)
APT55_RS22575	PWY-6892	thiazole biosynthesis I (E. coli)
APT55_RS22575	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS22575	PWY-7560	methylerythritol phosphate pathway II
APT55_RS22615	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT55_RS22615	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT55_RS22755	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS22800	PWY-5381	pyridine nucleotide cycling (plants)
APT55_RS22870	PWY-6012	acyl carrier protein metabolism I
APT55_RS22870	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APT55_RS22875	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS22875	PWY-622	starch biosynthesis
APT55_RS22890	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT55_RS22890	PWY-6164	3-dehydroquinate biosynthesis I
APT55_RS22890	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT55_RS23000	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APT55_RS23135	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
APT55_RS23190	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT55_RS23190	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS23190	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT55_RS23190	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT55_RS23195	PWY-6825	phosphatidylcholine biosynthesis V
APT55_RS23200	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS23200	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT55_RS23200	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT55_RS23200	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS23285	PWY-622	starch biosynthesis
APT55_RS23510	PWY-5913	TCA cycle VI (obligate autotrophs)
APT55_RS23510	PWY-6549	L-glutamine biosynthesis III
APT55_RS23510	PWY-6728	methylaspartate cycle
APT55_RS23510	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT55_RS23510	PWY-7124	ethylene biosynthesis V (engineered)
APT55_RS23510	PWY-7254	TCA cycle VII (acetate-producers)
APT55_RS23510	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT55_RS23620	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS23620	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS23625	PWY-6906	chitin derivatives degradation
APT55_RS23625	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APT55_RS23625	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APT55_RS23630	PWY-6123	inosine-5'-phosphate biosynthesis I
APT55_RS23630	PWY-7234	inosine-5'-phosphate biosynthesis III
APT55_RS23640	PWY-1042	glycolysis IV (plant cytosol)
APT55_RS23640	PWY-1622	formaldehyde assimilation I (serine pathway)
APT55_RS23640	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT55_RS23640	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS23640	PWY-5723	Rubisco shunt
APT55_RS23640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS23640	PWY-6886	1-butanol autotrophic biosynthesis
APT55_RS23640	PWY-6901	superpathway of glucose and xylose degradation
APT55_RS23640	PWY-7003	glycerol degradation to butanol
APT55_RS23640	PWY-7124	ethylene biosynthesis V (engineered)
APT55_RS23640	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT55_RS23660	PWY-5642	2,4-dinitrotoluene degradation
APT55_RS23660	PWY-6373	acrylate degradation
APT55_RS23895	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS23895	PWY-622	starch biosynthesis
APT55_RS23950	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APT55_RS23990	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT55_RS24060	PWY-6823	molybdenum cofactor biosynthesis
APT55_RS24060	PWY-6891	thiazole biosynthesis II (Bacillus)
APT55_RS24060	PWY-6892	thiazole biosynthesis I (E. coli)
APT55_RS24060	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT55_RS24085	PWY-2201	folate transformations I
APT55_RS24110	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT55_RS24110	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT55_RS24110	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT55_RS24125	PWY-7560	methylerythritol phosphate pathway II
APT55_RS24245	PWY-101	photosynthesis light reactions
APT55_RS24300	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT55_RS24300	PWY-7177	UTP and CTP dephosphorylation II
APT55_RS24300	PWY-7185	UTP and CTP dephosphorylation I
APT55_RS24350	PWY-5152	leucodelphinidin biosynthesis
APT55_RS24350	PWY-5515	L-arabinose degradation II
APT55_RS24350	PWY-6693	galactose degradation IV
APT55_RS24465	PWY-6749	CMP-legionaminate biosynthesis I
APT55_RS24490	PWY-6854	ethylene biosynthesis III (microbes)
APT55_RS24600	PWY-5686	UMP biosynthesis
APT55_RS24625	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APT55_RS24625	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT55_RS24625	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT55_RS24655	PWY-5704	urea degradation II
APT55_RS24680	PWY-6871	3-methylbutanol biosynthesis
APT55_RS24935	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT55_RS24935	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT55_RS25175	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT55_RS25175	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT55_RS25230	PWY-7183	pyrimidine nucleobases salvage I
APT55_RS25240	PWY-6168	flavin biosynthesis III (fungi)
APT55_RS25240	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT55_RS25280	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS25280	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS25370	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT55_RS25375	PWY-2301	<i>myo</i>-inositol biosynthesis
APT55_RS25375	PWY-4702	phytate degradation I
APT55_RS25375	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
APT55_RS25535	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT55_RS25535	PWY-622	starch biosynthesis
APT55_RS25545	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APT55_RS25625	PWY-6749	CMP-legionaminate biosynthesis I
APT55_RS25635	PWY-5101	L-isoleucine biosynthesis II
APT55_RS25635	PWY-5103	L-isoleucine biosynthesis III
APT55_RS25635	PWY-5104	L-isoleucine biosynthesis IV
APT55_RS25635	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT55_RS25635	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT55_RS25635	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT55_RS25635	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT55_RS25660	PWY-2661	trehalose biosynthesis V
APT55_RS25660	PWY-6902	chitin degradation II
APT55_RS25665	PWY-2661	trehalose biosynthesis V
APT55_RS25675	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT55_RS25690	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APT55_RS25690	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT55_RS25690	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT55_RS25720	PWY-6502	oxidized GTP and dGTP detoxification
APT55_RS25810	PWY-5941	glycogen degradation II (eukaryotic)
APT55_RS25810	PWY-6731	starch degradation III
APT55_RS25810	PWY-6737	starch degradation V
APT55_RS25810	PWY-7238	sucrose biosynthesis II
APT55_RS25880	PWY-6454	vancomycin resistance I
APT55_RS25880	PWY-6455	vancomycin resistance II
APT55_RS25895	PWY-2941	L-lysine biosynthesis II
APT55_RS25895	PWY-2942	L-lysine biosynthesis III
APT55_RS25895	PWY-5097	L-lysine biosynthesis VI
APT55_RS25895	PWY-6559	spermidine biosynthesis II
APT55_RS25895	PWY-6562	norspermidine biosynthesis
APT55_RS25895	PWY-7153	grixazone biosynthesis
APT55_RS25940	PWY-6098	diploterol and cycloartenol biosynthesis
APT55_RS25940	PWY-7072	hopanoid biosynthesis (bacteria)
APT55_RS25945	PWY-5659	GDP-mannose biosynthesis
APT55_RS25945	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APT55_RS26025	PWY-2201	folate transformations I
APT55_RS26050	PWY-5694	allantoin degradation to glyoxylate I
APT55_RS26050	PWY-5705	allantoin degradation to glyoxylate III
APT55_RS26060	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
APT55_RS26060	PWY-5368	dimorphecolate biosynthesis
APT55_RS26060	PWY-5995	linoleate biosynthesis I (plants)
APT55_RS26060	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
APT55_RS26060	PWY-6803	phosphatidylcholine acyl editing
APT55_RS26060	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
APT55_RS26060	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APT55_RS26060	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APT55_RS26060	PWY-7470	phosphatidylcholine biosynthesis VII
APT55_RS26060	PWY-7618	ricinoleate biosynthesis
APT55_RS26085	PWY-3801	sucrose degradation II (sucrose synthase)
APT55_RS26085	PWY-5054	sorbitol biosynthesis I
APT55_RS26085	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APT55_RS26085	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT55_RS26085	PWY-5659	GDP-mannose biosynthesis
APT55_RS26085	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS26085	PWY-621	sucrose degradation III (sucrose invertase)
APT55_RS26085	PWY-622	starch biosynthesis
APT55_RS26085	PWY-6981	chitin biosynthesis
APT55_RS26085	PWY-6992	1,5-anhydrofructose degradation
APT55_RS26085	PWY-7238	sucrose biosynthesis II
APT55_RS26085	PWY-7347	sucrose biosynthesis III
APT55_RS26085	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT55_RS26120	PWY-6788	cellulose degradation II (fungi)
APT55_RS26185	PWY-3961	phosphopantothenate biosynthesis II
APT55_RS26205	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS26205	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT55_RS26205	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT55_RS26205	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS26220	PWY-6562	norspermidine biosynthesis
APT55_RS26265	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS26265	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS26325	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT55_RS26340	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT55_RS26340	PWY-6164	3-dehydroquinate biosynthesis I
APT55_RS26340	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT55_RS26375	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT55_RS26400	PWY-822	fructan biosynthesis
APT55_RS26415	PWY-4983	L-citrulline-nitric oxide cycle
APT55_RS26415	PWY-4984	urea cycle
APT55_RS26415	PWY-5	canavanine biosynthesis
APT55_RS26415	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT55_RS26415	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT55_RS26445	PWY-5525	D-glucuronate degradation I
APT55_RS26585	PWY-5451	acetone degradation I (to methylglyoxal)
APT55_RS26585	PWY-6588	pyruvate fermentation to acetone
APT55_RS26585	PWY-6876	isopropanol biosynthesis
APT55_RS26585	PWY-7466	acetone degradation III (to propane-1,2-diol)
APT55_RS26685	PWY-6936	seleno-amino acid biosynthesis
APT55_RS26685	PWY-7274	D-cycloserine biosynthesis
APT55_RS26755	PWY-5194	siroheme biosynthesis
APT55_RS26755	PWY-5441	S-methyl-L-methionine cycle
APT55_RS26755	PWY-702	L-methionine biosynthesis II
APT55_RS26755	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT55_RS26760	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT55_RS26790	PWY-5101	L-isoleucine biosynthesis II
APT55_RS26790	PWY-5103	L-isoleucine biosynthesis III
APT55_RS26790	PWY-5104	L-isoleucine biosynthesis IV
APT55_RS26790	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT55_RS26835	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT55_RS26835	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS26835	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT55_RS26835	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT55_RS26925	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT55_RS26925	PWY-6148	tetrahydromethanopterin biosynthesis
APT55_RS26925	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APT55_RS26925	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT55_RS26945	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS26945	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS26955	PWY-7254	TCA cycle VII (acetate-producers)
APT55_RS26965	PWY-6004	glycine betaine biosynthesis V (from glycine)
APT55_RS27115	PWY-6683	sulfate reduction III (assimilatory)
APT55_RS27130	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT55_RS27215	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APT55_RS27215	PWY-5901	2,3-dihydroxybenzoate biosynthesis
APT55_RS27215	PWY-6406	salicylate biosynthesis I
APT55_RS27225	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APT55_RS27230	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
APT55_RS27285	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT55_RS27285	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT55_RS27315	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT55_RS27315	PWY-5686	UMP biosynthesis
APT55_RS27315	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT55_RS27385	PWY-6840	homoglutathione biosynthesis
APT55_RS27385	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT55_RS27590	PWY-5839	menaquinol-7 biosynthesis
APT55_RS27590	PWY-5844	menaquinol-9 biosynthesis
APT55_RS27590	PWY-5849	menaquinol-6 biosynthesis
APT55_RS27590	PWY-5890	menaquinol-10 biosynthesis
APT55_RS27590	PWY-5891	menaquinol-11 biosynthesis
APT55_RS27590	PWY-5892	menaquinol-12 biosynthesis
APT55_RS27590	PWY-5895	menaquinol-13 biosynthesis
APT55_RS27625	PWY-101	photosynthesis light reactions
APT55_RS27795	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT55_RS27810	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT55_RS27810	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT55_RS27815	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT55_RS27815	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT55_RS27945	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT55_RS27945	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT55_RS27945	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT55_RS27980	PWY-3821	galactose degradation III
APT55_RS27980	PWY-6317	galactose degradation I (Leloir pathway)
APT55_RS27980	PWY-6527	stachyose degradation
APT55_RS27990	PWY-6317	galactose degradation I (Leloir pathway)
APT55_RS27990	PWY-6527	stachyose degradation
APT55_RS27995	PWY-3821	galactose degradation III
APT55_RS27995	PWY-6317	galactose degradation I (Leloir pathway)
APT55_RS27995	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT55_RS27995	PWY-6527	stachyose degradation
APT55_RS27995	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT55_RS27995	PWY-7344	UDP-D-galactose biosynthesis
APT55_RS28000	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT55_RS28000	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT55_RS28000	PWY-7622	UDP-galactofuranose biosynthesis
APT55_RS28010	PWY-6807	xyloglucan degradation II (exoglucanase)
APT55_RS28015	PWY-6531	mannitol cycle
APT55_RS28120	PWY-5386	methylglyoxal degradation I
APT55_RS28125	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT55_RS28210	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT55_RS28215	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT55_RS28225	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT55_RS28225	PWY-3801	sucrose degradation II (sucrose synthase)
APT55_RS28225	PWY-5054	sorbitol biosynthesis I
APT55_RS28225	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APT55_RS28225	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT55_RS28225	PWY-5659	GDP-mannose biosynthesis
APT55_RS28225	PWY-5723	Rubisco shunt
APT55_RS28225	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT55_RS28225	PWY-621	sucrose degradation III (sucrose invertase)
APT55_RS28225	PWY-622	starch biosynthesis
APT55_RS28225	PWY-6981	chitin biosynthesis
APT55_RS28225	PWY-6992	1,5-anhydrofructose degradation
APT55_RS28225	PWY-7238	sucrose biosynthesis II
APT55_RS28225	PWY-7347	sucrose biosynthesis III
APT55_RS28225	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT55_RS28230	PWY-2722	trehalose degradation IV
APT55_RS28230	PWY-2723	trehalose degradation V
APT55_RS28230	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT55_RS28230	PWY-5661	GDP-glucose biosynthesis
APT55_RS28230	PWY-621	sucrose degradation III (sucrose invertase)
APT55_RS28230	PWY-7238	sucrose biosynthesis II
APT55_RS28230	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT55_RS28240	PWY-2722	trehalose degradation IV
APT55_RS28240	PWY-2723	trehalose degradation V
APT55_RS28240	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT55_RS28240	PWY-5661	GDP-glucose biosynthesis
APT55_RS28240	PWY-621	sucrose degradation III (sucrose invertase)
APT55_RS28240	PWY-7238	sucrose biosynthesis II
APT55_RS28240	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT55_RS28350	PWY-1001	cellulose biosynthesis
APT55_RS28985	PWY-4041	&gamma;-glutamyl cycle
APT55_RS28985	PWY-5826	hypoglycin biosynthesis
APT55_RS29025	PWY-5964	guanylyl molybdenum cofactor biosynthesis
APT55_RS29025	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
APT55_RS29090	PWY-101	photosynthesis light reactions
APT55_RS29150	PWY-2201	folate transformations I
APT55_RS29160	PWY-7142	cyanide detoxification II
APT55_RS29210	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT55_RS29210	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT55_RS29690	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APT55_RS30355	PWY-5839	menaquinol-7 biosynthesis
APT55_RS30355	PWY-5844	menaquinol-9 biosynthesis
APT55_RS30355	PWY-5849	menaquinol-6 biosynthesis
APT55_RS30355	PWY-5890	menaquinol-10 biosynthesis
APT55_RS30355	PWY-5891	menaquinol-11 biosynthesis
APT55_RS30355	PWY-5892	menaquinol-12 biosynthesis
APT55_RS30355	PWY-5895	menaquinol-13 biosynthesis
APT55_RS30430	PWY-6902	chitin degradation II