APT55_RS00005 PF00308 Bacterial dnaA protein APT55_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix APT55_RS00005 PF11638 DnaA N-terminal domain APT55_RS00015 PF01934 Protein of unknown function DUF86 APT55_RS00020 PF01909 Nucleotidyltransferase domain APT55_RS00025 PF06745 KaiC APT55_RS00025 PF13541 Subunit ChlI of Mg-chelatase APT55_RS00030 PF00072 Response regulator receiver domain APT55_RS00030 PF00486 Transcriptional regulatory protein, C terminal APT55_RS00035 PF00150 Cellulase (glycosyl hydrolase family 5) APT55_RS00055 PF13181 Tetratricopeptide repeat APT55_RS00055 PF13432 Tetratricopeptide repeat APT55_RS00060 PF01270 Glycosyl hydrolases family 8 APT55_RS00065 PF03170 Bacterial cellulose synthase subunit APT55_RS00070 PF00535 Glycosyl transferase family 2 APT55_RS00070 PF03552 Cellulose synthase APT55_RS00070 PF07238 PilZ domain APT55_RS00075 PF00535 Glycosyl transferase family 2 APT55_RS00080 PF00072 Response regulator receiver domain APT55_RS00080 PF00486 Transcriptional regulatory protein, C terminal APT55_RS00085 PF12095 Protein of unknown function (DUF3571) APT55_RS00090 PF00781 Diacylglycerol kinase catalytic domain APT55_RS00095 PF00072 Response regulator receiver domain APT55_RS00095 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00095 PF01590 GAF domain APT55_RS00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00095 PF13426 PAS domain APT55_RS00100 PF00072 Response regulator receiver domain APT55_RS00100 PF00990 GGDEF domain APT55_RS00105 PF13505 Outer membrane protein beta-barrel domain APT55_RS00115 PF13414 TPR repeat APT55_RS00115 PF13431 Tetratricopeptide repeat APT55_RS00115 PF13432 Tetratricopeptide repeat APT55_RS00130 PF01967 MoaC family APT55_RS00135 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase APT55_RS00140 PF00459 Inositol monophosphatase family APT55_RS00150 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS00155 PF00582 Universal stress protein family APT55_RS00160 PF00815 Histidinol dehydrogenase APT55_RS00165 PF01649 Ribosomal protein S20 APT55_RS00170 PF01026 TatD related DNase APT55_RS00175 PF00562 RNA polymerase Rpb2, domain 6 APT55_RS00175 PF04560 RNA polymerase Rpb2, domain 7 APT55_RS00175 PF04561 RNA polymerase Rpb2, domain 2 APT55_RS00175 PF04563 RNA polymerase beta subunit APT55_RS00175 PF04565 RNA polymerase Rpb2, domain 3 APT55_RS00175 PF10385 RNA polymerase beta subunit external 1 domain APT55_RS00180 PF00623 RNA polymerase Rpb1, domain 2 APT55_RS00180 PF04983 RNA polymerase Rpb1, domain 3 APT55_RS00180 PF04997 RNA polymerase Rpb1, domain 1 APT55_RS00185 PF04983 RNA polymerase Rpb1, domain 3 APT55_RS00185 PF04998 RNA polymerase Rpb1, domain 5 APT55_RS00185 PF05000 RNA polymerase Rpb1, domain 4 APT55_RS00190 PF00805 Pentapeptide repeats (8 copies) APT55_RS00195 PF00076 RNA recognition motif APT55_RS00200 PF00076 RNA recognition motif APT55_RS00205 PF01165 Ribosomal protein S21 APT55_RS00210 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS00220 PF01502 Phosphoribosyl-AMP cyclohydrolase APT55_RS00220 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APT55_RS00225 PF00480 ROK family APT55_RS00240 PF04471 Restriction endonuclease APT55_RS00250 PF00583 Acetyltransferase (GNAT) family APT55_RS00260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT55_RS00265 PF00005 ABC transporter APT55_RS00275 PF01596 O-methyltransferase APT55_RS00285 PF01888 CbiD APT55_RS00290 PF00117 Glutamine amidotransferase class-I APT55_RS00290 PF00958 GMP synthase C terminal domain APT55_RS00295 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family APT55_RS00300 PF11320 APT55_RS00300 APT55_RS00305 PF11909 APT55_RS00305 APT55_RS00310 PF07690 Major Facilitator Superfamily APT55_RS00315 PF06912 APT55_RS00315 APT55_RS00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS00340 PF00733 Asparagine synthase APT55_RS00345 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS00350 PF03062 APT55_RS00350 APT55_RS00360 PF14242 APT55_RS00360 APT55_RS00365 PF00365 Phosphofructokinase APT55_RS00370 PF02092 APT55_RS00370 APT55_RS00380 PF06202 Amylo-alpha-1,6-glucosidase APT55_RS00380 PF14742 APT55_RS00380 APT55_RS00385 PF00224 Pyruvate kinase, barrel domain APT55_RS00385 PF00391 PEP-utilising enzyme, mobile domain APT55_RS00385 PF02887 Pyruvate kinase, alpha/beta domain APT55_RS00390 PF00072 Response regulator receiver domain APT55_RS00390 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00395 PF05150 APT55_RS00395 APT55_RS00400 PF00353 Hemolysin-type calcium-binding repeat (2 copies) APT55_RS00400 PF14252 APT55_RS00400 APT55_RS00405 PF13145 PPIC-type PPIASE domain APT55_RS00410 PF13549 ATP-grasp domain APT55_RS00420 PF03575 Peptidase family S51 APT55_RS00430 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS00430 PF02861 Clp amino terminal domain APT55_RS00430 PF07724 AAA domain (Cdc48 subfamily) APT55_RS00430 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS00440 PF08369 Proto-chlorophyllide reductase 57 kD subunit APT55_RS00445 PF00931 NB-ARC domain APT55_RS00445 PF13424 Tetratricopeptide repeat APT55_RS00465 PF03840 Preprotein translocase SecG subunit APT55_RS00485 PF01841 Transglutaminase-like superfamily APT55_RS00490 PF13506 Glycosyl transferase family 21 APT55_RS00500 PF12766 Pyridoxamine 5'-phosphate oxidase APT55_RS00505 PF07819 PGAP1-like protein APT55_RS00515 PF03734 L,D-transpeptidase catalytic domain APT55_RS00520 PF10615 Protein of unknown function (DUF2470) APT55_RS00525 PF00534 Glycosyl transferases group 1 APT55_RS00530 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT55_RS00530 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT55_RS00540 PF01225 Mur ligase family, catalytic domain APT55_RS00540 PF02875 Mur ligase family, glutamate ligase domain APT55_RS00540 PF08245 Mur ligase middle domain APT55_RS00545 PF01565 FAD binding domain APT55_RS00545 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APT55_RS00550 PF02575 YbaB/EbfC DNA-binding family APT55_RS00560 PF00069 Protein kinase domain APT55_RS00565 PF02545 Maf-like protein APT55_RS00570 PF01789 PsbP APT55_RS00580 PF11237 APT55_RS00580 APT55_RS00585 PF14233 APT55_RS00585 APT55_RS00595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS00595 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) APT55_RS00605 PF13431 Tetratricopeptide repeat APT55_RS00610 PF07693 APT55_RS00610 APT55_RS00625 PF13365 Trypsin-like peptidase domain APT55_RS00640 PF13384 Homeodomain-like domain APT55_RS00660 PF01464 Transglycosylase SLT domain APT55_RS00660 PF01551 Peptidase family M23 APT55_RS00695 PF14279 APT55_RS00695 APT55_RS00730 PF13455 APT55_RS00730 APT55_RS00740 PF08706 APT55_RS00740 APT55_RS00740 PF12965 APT55_RS00740 APT55_RS00765 PF02514 APT55_RS00765 APT55_RS00770 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00770 PF01590 GAF domain APT55_RS00770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APT55_RS00785 PF00805 Pentapeptide repeats (8 copies) APT55_RS00785 PF13599 Pentapeptide repeats (9 copies) APT55_RS00790 PF00400 WD domain, G-beta repeat APT55_RS00795 PF01113 Dihydrodipicolinate reductase, N-terminus APT55_RS00795 PF05173 Dihydrodipicolinate reductase, C-terminus APT55_RS00800 PF00501 AMP-binding enzyme APT55_RS00800 PF00550 Phosphopantetheine attachment site APT55_RS00800 PF01757 APT55_RS00800 APT55_RS00805 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APT55_RS00805 PF03900 Porphobilinogen deaminase, C-terminal domain APT55_RS00810 PF01266 FAD dependent oxidoreductase APT55_RS00820 PF13180 PDZ domain APT55_RS00820 PF13365 Trypsin-like peptidase domain APT55_RS00825 PF05542 APT55_RS00825 APT55_RS00830 PF14437 APT55_RS00830 APT55_RS00835 PF00490 Delta-aminolevulinic acid dehydratase APT55_RS00840 PF08495 APT55_RS00840 APT55_RS00840 PF10442 APT55_RS00840 APT55_RS00845 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS00845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS00850 PF00106 short chain dehydrogenase APT55_RS00850 PF04116 APT55_RS00850 APT55_RS00855 PF01545 Cation efflux family APT55_RS00860 PF08282 haloacid dehalogenase-like hydrolase APT55_RS00865 PF05746 DALR anticodon binding domain APT55_RS00870 PF00325 Bacterial regulatory proteins, crp family APT55_RS00875 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS00880 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS00880 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT55_RS00880 PF01010 APT55_RS00880 APT55_RS00885 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS00890 PF13612 APT55_RS00890 APT55_RS00895 PF03797 Autotransporter beta-domain APT55_RS00905 PF03738 Glutathionylspermidine synthase preATP-grasp APT55_RS00915 PF00082 Subtilase family APT55_RS00915 PF01483 Proprotein convertase P-domain APT55_RS00930 PF00344 SecY translocase APT55_RS00935 PF00406 Adenylate kinase APT55_RS00945 PF00999 Sodium/hydrogen exchanger family APT55_RS00950 PF00498 FHA domain APT55_RS00955 PF00498 FHA domain APT55_RS00970 PF02233 NAD(P) transhydrogenase beta subunit APT55_RS00975 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT55_RS00975 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT55_RS00975 PF12769 Domain of unknown function (DUF3814) APT55_RS00980 PF10989 APT55_RS00980 APT55_RS00985 PF00468 Ribosomal protein L34 APT55_RS00990 PF00825 Ribonuclease P APT55_RS00995 PF03703 APT55_RS00995 APT55_RS01000 PF02096 60Kd inner membrane protein APT55_RS01005 PF01424 R3H domain APT55_RS01010 PF02620 APT55_RS01010 APT55_RS01015 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS01020 PF13275 S4 domain APT55_RS01025 PF13483 Beta-lactamase superfamily domain APT55_RS01030 PF01329 Pterin 4 alpha carbinolamine dehydratase APT55_RS01035 PF13413 Helix-turn-helix domain APT55_RS01045 PF06325 Ribosomal protein L11 methyltransferase (PrmA) APT55_RS01050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT55_RS01050 PF01842 ACT domain APT55_RS01050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT55_RS01060 PF02091 Glycyl-tRNA synthetase alpha subunit APT55_RS01090 PF00436 Single-strand binding protein family APT55_RS01100 PF00534 Glycosyl transferases group 1 APT55_RS01100 PF08323 Starch synthase catalytic domain APT55_RS01105 PF01432 Peptidase family M3 APT55_RS01105 PF08439 Oligopeptidase F APT55_RS01110 PF01522 Polysaccharide deacetylase APT55_RS01120 PF12098 APT55_RS01120 APT55_RS01130 PF00487 APT55_RS01130 APT55_RS01135 PF01042 Endoribonuclease L-PSP APT55_RS01140 PF00293 NUDIX domain APT55_RS01145 PF02446 4-alpha-glucanotransferase APT55_RS01150 PF00072 Response regulator receiver domain APT55_RS01155 PF00406 Adenylate kinase APT55_RS01165 PF11691 APT55_RS01165 APT55_RS01175 PF01471 Putative peptidoglycan binding domain APT55_RS01180 PF14261 APT55_RS01180 APT55_RS01185 PF00069 Protein kinase domain APT55_RS01195 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT55_RS01200 PF01609 Transposase DDE domain APT55_RS01210 PF15643 APT55_RS01210 APT55_RS01215 PF00809 Pterin binding enzyme APT55_RS01215 PF02310 B12 binding domain APT55_RS01215 PF02574 Homocysteine S-methyltransferase APT55_RS01215 PF02607 B12 binding domain APT55_RS01215 PF02965 Vitamin B12 dependent methionine synthase, activation domain APT55_RS01220 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS01220 PF01434 Peptidase family M41 APT55_RS01220 PF06480 FtsH Extracellular APT55_RS01225 PF06480 FtsH Extracellular APT55_RS01230 PF00535 Glycosyl transferase family 2 APT55_RS01230 PF13181 Tetratricopeptide repeat APT55_RS01230 PF13414 TPR repeat APT55_RS01235 PF01063 Aminotransferase class IV APT55_RS01240 PF13174 Tetratricopeptide repeat APT55_RS01240 PF13432 Tetratricopeptide repeat APT55_RS01245 PF00575 S1 RNA binding domain APT55_RS01250 PF01738 Dienelactone hydrolase family APT55_RS01255 PF00392 Bacterial regulatory proteins, gntR family APT55_RS01265 PF13673 Acetyltransferase (GNAT) domain APT55_RS01270 PF01131 DNA topoisomerase APT55_RS01270 PF01751 Toprim domain APT55_RS01275 PF00472 RF-1 domain APT55_RS01280 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS01280 PF02861 Clp amino terminal domain APT55_RS01280 PF07724 AAA domain (Cdc48 subfamily) APT55_RS01280 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS01285 PF02416 mttA/Hcf106 family APT55_RS01290 PF05860 haemagglutination activity domain APT55_RS01295 PF00400 WD domain, G-beta repeat APT55_RS01295 PF14516 APT55_RS01295 APT55_RS01300 PF01145 SPFH domain / Band 7 family APT55_RS01305 PF01957 NfeD-like C-terminal, partner-binding APT55_RS01310 PF13672 Protein phosphatase 2C APT55_RS01315 PF02941 Ferredoxin thioredoxin reductase variable alpha chain APT55_RS01325 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS01325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS01325 PF13426 PAS domain APT55_RS01330 PF11209 APT55_RS01330 APT55_RS01335 PF09990 APT55_RS01335 APT55_RS01345 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS01380 PF04542 Sigma-70 region 2 APT55_RS01380 PF08281 Sigma-70, region 4 APT55_RS01385 PF03795 YCII-related domain APT55_RS01390 PF07617 APT55_RS01390 APT55_RS01395 PF03795 YCII-related domain APT55_RS01400 PF06983 3-demethylubiquinone-9 3-methyltransferase APT55_RS01405 PF03795 YCII-related domain APT55_RS01410 PF00355 Rieske [2Fe-2S] domain APT55_RS01415 PF03739 APT55_RS01415 APT55_RS01420 PF00005 ABC transporter APT55_RS01425 PF03968 OstA-like protein APT55_RS01430 PF03745 Domain of unknown function (DUF309) APT55_RS01435 PF01882 APT55_RS01435 APT55_RS01440 PF00437 Type II/IV secretion system protein APT55_RS01445 PF13640 2OG-Fe(II) oxygenase superfamily APT55_RS01450 PF00462 Glutaredoxin APT55_RS01455 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APT55_RS01455 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APT55_RS01460 PF00990 GGDEF domain APT55_RS01460 PF05226 APT55_RS01460 APT55_RS01460 PF08448 PAS fold APT55_RS01465 PF05977 Transmembrane secretion effector APT55_RS01470 PF07690 Major Facilitator Superfamily APT55_RS01475 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS01480 PF00842 Alanine racemase, C-terminal domain APT55_RS01480 PF01168 Alanine racemase, N-terminal domain APT55_RS01490 PF06967 APT55_RS01490 APT55_RS01500 PF03562 MltA specific insert domain APT55_RS01500 PF06725 3D domain APT55_RS01505 PF00717 Peptidase S24-like APT55_RS01505 PF01726 LexA DNA binding domain APT55_RS01510 PF00202 Aminotransferase class-III APT55_RS01515 PF02069 Prokaryotic metallothionein APT55_RS01520 PF04461 Protein of unknown function (DUF520) APT55_RS01525 PF01124 MAPEG family APT55_RS01535 PF03551 Transcriptional regulator PadR-like family APT55_RS01535 PF10400 Virulence activator alpha C-term APT55_RS01540 PF13437 HlyD family secretion protein APT55_RS01540 PF13533 Biotin-lipoyl like APT55_RS01545 PF11695 APT55_RS01545 APT55_RS01550 PF02687 APT55_RS01550 APT55_RS01555 PF00005 ABC transporter APT55_RS01560 PF03055 Retinal pigment epithelial membrane protein APT55_RS01565 PF00072 Response regulator receiver domain APT55_RS01570 PF04055 Radical SAM superfamily APT55_RS01575 PF06094 AIG2-like family APT55_RS01580 PF13490 Putative zinc-finger APT55_RS01585 PF04542 Sigma-70 region 2 APT55_RS01585 PF08281 Sigma-70, region 4 APT55_RS01595 PF13538 UvrD-like helicase C-terminal domain APT55_RS01595 PF13604 AAA domain APT55_RS01595 PF14490 Helix-hairpin-helix containing domain APT55_RS01610 PF02080 TrkA-C domain APT55_RS01610 PF02254 TrkA-N domain APT55_RS01620 PF00583 Acetyltransferase (GNAT) family APT55_RS01625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT55_RS01625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT55_RS01625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT55_RS01625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT55_RS01635 PF11375 APT55_RS01635 APT55_RS01640 PF00072 Response regulator receiver domain APT55_RS01640 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS01640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS01645 PF12679 APT55_RS01645 APT55_RS01660 PF01048 Phosphorylase superfamily APT55_RS01670 PF00534 Glycosyl transferases group 1 APT55_RS01670 PF13439 Glycosyltransferase Family 4 APT55_RS01675 PF00534 Glycosyl transferases group 1 APT55_RS01675 PF13439 Glycosyltransferase Family 4 APT55_RS01680 PF00005 ABC transporter APT55_RS01680 PF00664 ABC transporter transmembrane region APT55_RS01685 PF02397 APT55_RS01685 APT55_RS01690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS01690 PF02706 Chain length determinant protein APT55_RS01705 PF01863 Protein of unknown function DUF45 APT55_RS01710 PF00772 DnaB-like helicase N terminal domain APT55_RS01710 PF03796 DnaB-like helicase C terminal domain APT55_RS01710 PF14528 LAGLIDADG-like domain APT55_RS01710 PF14890 Intein splicing domain APT55_RS01715 PF01281 Ribosomal protein L9, N-terminal domain APT55_RS01715 PF03948 Ribosomal protein L9, C-terminal domain APT55_RS01720 PF00501 AMP-binding enzyme APT55_RS01720 PF00550 Phosphopantetheine attachment site APT55_RS01720 PF00668 Condensation domain APT55_RS01720 PF00975 Thioesterase domain APT55_RS01720 PF13193 AMP-binding enzyme C-terminal domain APT55_RS01720 PF13745 HxxPF-repeated domain APT55_RS01735 PF12049 APT55_RS01735 APT55_RS01740 PF13432 Tetratricopeptide repeat APT55_RS01745 PF00005 ABC transporter APT55_RS01750 PF02527 rRNA small subunit methyltransferase G APT55_RS01755 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS01760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS01765 PF09654 APT55_RS01765 APT55_RS01770 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS01775 PF06298 Photosystem II protein Y (PsbY) APT55_RS01780 PF01613 Flavin reductase like domain APT55_RS01785 PF03741 APT55_RS01785 APT55_RS01790 PF00877 NlpC/P60 family APT55_RS01795 PF13354 Beta-lactamase enzyme family APT55_RS01805 PF01926 50S ribosome-binding GTPase APT55_RS01805 PF05128 APT55_RS01805 APT55_RS01810 PF01165 Ribosomal protein S21 APT55_RS01820 PF01699 Sodium/calcium exchanger protein APT55_RS01825 PF03065 Glycosyl hydrolase family 57 APT55_RS01825 PF12055 APT55_RS01825 APT55_RS01830 PF03965 Penicillinase repressor APT55_RS01840 PF01761 3-dehydroquinate synthase APT55_RS01845 PF07859 alpha/beta hydrolase fold APT55_RS01850 PF00171 Aldehyde dehydrogenase family APT55_RS01855 PF00578 AhpC/TSA family APT55_RS01855 PF10417 C-terminal domain of 1-Cys peroxiredoxin APT55_RS01860 PF00578 AhpC/TSA family APT55_RS01865 PF00226 DnaJ domain APT55_RS01865 PF01556 DnaJ C terminal domain APT55_RS01870 PF08331 APT55_RS01870 APT55_RS01870 PF13484 APT55_RS01870 APT55_RS01875 PF12680 SnoaL-like domain APT55_RS01880 PF02082 Transcriptional regulator APT55_RS01890 PF00072 Response regulator receiver domain APT55_RS01890 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS01895 PF00072 Response regulator receiver domain APT55_RS01895 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS01895 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS01900 PF00072 Response regulator receiver domain APT55_RS01900 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS01900 PF00672 HAMP domain APT55_RS01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS01900 PF11845 APT55_RS01900 APT55_RS01920 PF05016 Plasmid stabilisation system protein APT55_RS01925 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APT55_RS01930 PF06146 APT55_RS01930 APT55_RS01935 PF00889 Elongation factor TS APT55_RS01940 PF00318 Ribosomal protein S2 APT55_RS01950 PF00571 CBS domain APT55_RS01950 PF13398 Peptidase M50B-like APT55_RS01955 PF05685 Putative restriction endonuclease APT55_RS01960 PF13231 APT55_RS01960 APT55_RS01970 PF16277 APT55_RS01970 APT55_RS01985 PF04255 Protein of unknown function (DUF433) APT55_RS01990 PF07927 YcfA-like protein APT55_RS01995 PF15919 APT55_RS01995 APT55_RS02000 PF00805 Pentapeptide repeats (8 copies) APT55_RS02000 PF05729 NACHT domain APT55_RS02010 PF13231 APT55_RS02010 APT55_RS02015 PF00535 Glycosyl transferase family 2 APT55_RS02015 PF04138 APT55_RS02015 APT55_RS02020 PF00226 DnaJ domain APT55_RS02020 PF07719 Tetratricopeptide repeat APT55_RS02025 PF13393 Histidyl-tRNA synthetase APT55_RS02030 PF00709 Adenylosuccinate synthetase APT55_RS02035 PF01386 Ribosomal L25p family APT55_RS02040 PF13671 AAA domain APT55_RS02055 PF05419 GUN4-like APT55_RS02055 PF05729 NACHT domain APT55_RS02060 PF11103 APT55_RS02060 APT55_RS02065 PF01381 Helix-turn-helix APT55_RS02075 PF01844 HNH endonuclease APT55_RS02080 PF00072 Response regulator receiver domain APT55_RS02080 PF00486 Transcriptional regulatory protein, C terminal APT55_RS02085 PF00427 Phycobilisome Linker polypeptide APT55_RS02090 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS02090 PF00989 PAS fold APT55_RS02090 PF01590 GAF domain APT55_RS02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS02090 PF13426 PAS domain APT55_RS02095 PF01264 Chorismate synthase APT55_RS02100 PF07176 APT55_RS02100 APT55_RS02120 PF00478 IMP dehydrogenase / GMP reductase domain APT55_RS02130 PF10726 APT55_RS02130 APT55_RS02135 PF00465 Iron-containing alcohol dehydrogenase APT55_RS02140 PF13495 Phage integrase, N-terminal SAM-like domain APT55_RS02145 PF05685 Putative restriction endonuclease APT55_RS02150 PF00155 Aminotransferase class I and II APT55_RS02155 PF05990 Alpha/beta hydrolase of unknown function (DUF900) APT55_RS02160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT55_RS02165 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS02190 PF00072 Response regulator receiver domain APT55_RS02190 PF00196 Bacterial regulatory proteins, luxR family APT55_RS02205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT55_RS02205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT55_RS02220 PF05685 Putative restriction endonuclease APT55_RS02225 PF13646 HEAT repeats APT55_RS02230 PF12617 APT55_RS02230 APT55_RS02235 PF01424 R3H domain APT55_RS02235 PF13604 AAA domain APT55_RS02240 PF00501 AMP-binding enzyme APT55_RS02240 PF13193 AMP-binding enzyme C-terminal domain APT55_RS02240 PF16177 APT55_RS02240 APT55_RS02255 PF00805 Pentapeptide repeats (8 copies) APT55_RS02260 PF09992 Predicted periplasmic protein (DUF2233) APT55_RS02265 PF03167 Uracil DNA glycosylase superfamily APT55_RS02270 PF01292 Prokaryotic cytochrome b561 APT55_RS02275 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS02280 PF00535 Glycosyl transferase family 2 APT55_RS02290 PF03772 APT55_RS02290 APT55_RS02290 PF13567 APT55_RS02290 APT55_RS02295 PF03318 Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 APT55_RS02300 PF13301 APT55_RS02300 APT55_RS02305 PF06949 APT55_RS02305 APT55_RS02305 PF12527 APT55_RS02305 APT55_RS02310 PF02618 YceG-like family APT55_RS02315 PF13242 HAD-hyrolase-like APT55_RS02320 PF00005 ABC transporter APT55_RS02330 PF00072 Response regulator receiver domain APT55_RS02335 PF00639 PPIC-type PPIASE domain APT55_RS02350 PF08852 APT55_RS02350 APT55_RS02355 PF08281 Sigma-70, region 4 APT55_RS02365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS02370 PF07508 Recombinase APT55_RS02380 PF03023 APT55_RS02380 APT55_RS02385 PF04134 APT55_RS02385 APT55_RS02390 PF08670 APT55_RS02390 APT55_RS02395 PF00128 Alpha amylase, catalytic domain APT55_RS02395 PF02806 Alpha amylase, C-terminal all-beta domain APT55_RS02400 PF01638 HxlR-like helix-turn-helix APT55_RS02405 PF07883 Cupin domain APT55_RS02410 PF00534 Glycosyl transferases group 1 APT55_RS02410 PF00862 Sucrose synthase APT55_RS02415 PF03632 Glycosyl hydrolase family 65 central catalytic domain APT55_RS02415 PF03633 Glycosyl hydrolase family 65, C-terminal domain APT55_RS02415 PF03636 Glycosyl hydrolase family 65, N-terminal domain APT55_RS02415 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS02420 PF00487 APT55_RS02420 APT55_RS02425 PF02548 Ketopantoate hydroxymethyltransferase APT55_RS02430 PF07494 Two component regulator propeller APT55_RS02435 PF13672 Protein phosphatase 2C APT55_RS02440 PF00498 FHA domain APT55_RS02440 PF12770 APT55_RS02440 APT55_RS02455 PF00919 Uncharacterized protein family UPF0004 APT55_RS02455 PF01938 TRAM domain APT55_RS02455 PF04055 Radical SAM superfamily APT55_RS02470 PF02401 LytB protein APT55_RS02475 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS02480 PF04255 Protein of unknown function (DUF433) APT55_RS02490 PF04116 APT55_RS02490 APT55_RS02495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT55_RS02510 PF01467 Cytidylyltransferase APT55_RS02515 PF00248 Aldo/keto reductase family APT55_RS02520 PF00571 CBS domain APT55_RS02520 PF01368 DHH family APT55_RS02520 PF01743 Poly A polymerase head domain APT55_RS02525 PF01737 YCF9 APT55_RS02530 PF00885 6,7-dimethyl-8-ribityllumazine synthase APT55_RS02535 PF00005 ABC transporter APT55_RS02535 PF03459 TOBE domain APT55_RS02545 PF14424 APT55_RS02545 APT55_RS02555 PF00400 WD domain, G-beta repeat APT55_RS02555 PF00656 Caspase domain APT55_RS02555 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APT55_RS02560 PF00395 S-layer homology domain APT55_RS02565 PF01380 SIS domain APT55_RS02570 PF07690 Major Facilitator Superfamily APT55_RS02575 PF02469 Fasciclin domain APT55_RS02580 PF07722 Peptidase C26 APT55_RS02585 PF06182 APT55_RS02585 APT55_RS02590 PF06182 APT55_RS02590 APT55_RS02595 PF00962 Adenosine/AMP deaminase APT55_RS02600 PF01578 APT55_RS02600 APT55_RS02605 PF08872 APT55_RS02605 APT55_RS02615 PF04255 Protein of unknown function (DUF433) APT55_RS02620 PF01171 PP-loop family APT55_RS02630 PF00072 Response regulator receiver domain APT55_RS02630 PF14332 APT55_RS02630 APT55_RS02635 PF00072 Response regulator receiver domain APT55_RS02640 PF01584 CheW-like domain APT55_RS02650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS02650 PF00672 HAMP domain APT55_RS02655 PF00072 Response regulator receiver domain APT55_RS02655 PF01584 CheW-like domain APT55_RS02655 PF01627 Hpt domain APT55_RS02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS02655 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS02660 PF00534 Glycosyl transferases group 1 APT55_RS02660 PF13439 Glycosyltransferase Family 4 APT55_RS02665 PF00534 Glycosyl transferases group 1 APT55_RS02665 PF13439 Glycosyltransferase Family 4 APT55_RS02670 PF09084 NMT1/THI5 like APT55_RS02675 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT55_RS02680 PF00502 Phycobilisome protein APT55_RS02685 PF00502 Phycobilisome protein APT55_RS02690 PF05977 Transmembrane secretion effector APT55_RS02695 PF00395 S-layer homology domain APT55_RS02695 PF04966 Carbohydrate-selective porin, OprB family APT55_RS02710 PF00578 AhpC/TSA family APT55_RS02715 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS02720 PF01596 O-methyltransferase APT55_RS02725 PF05935 Arylsulfotransferase (ASST) APT55_RS02730 PF13532 2OG-Fe(II) oxygenase superfamily APT55_RS02740 PF04909 Amidohydrolase APT55_RS02745 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS02750 PF00005 ABC transporter APT55_RS02750 PF00664 ABC transporter transmembrane region APT55_RS02755 PF00805 Pentapeptide repeats (8 copies) APT55_RS02765 PF05685 Putative restriction endonuclease APT55_RS02775 PF04143 APT55_RS02775 APT55_RS02780 PF13379 NMT1-like family APT55_RS02785 PF13649 Methyltransferase domain APT55_RS02790 PF00881 Nitroreductase family APT55_RS02795 PF01047 MarR family APT55_RS02800 PF08883 Dopa 4,5-dioxygenase family APT55_RS02805 PF00296 Luciferase-like monooxygenase APT55_RS02815 PF00043 Glutathione S-transferase, C-terminal domain APT55_RS02815 PF13417 Glutathione S-transferase, N-terminal domain APT55_RS02825 PF09084 NMT1/THI5 like APT55_RS02835 PF10609 ParA/MinD ATPase like APT55_RS02845 PF02557 D-alanyl-D-alanine carboxypeptidase APT55_RS02850 PF00069 Protein kinase domain APT55_RS02850 PF08239 Bacterial SH3 domain APT55_RS02865 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS02870 PF00005 ABC transporter APT55_RS02880 PF03358 NADPH-dependent FMN reductase APT55_RS02910 PF03596 APT55_RS02910 APT55_RS02915 PF00324 Amino acid permease APT55_RS02920 PF03596 APT55_RS02920 APT55_RS02930 PF02656 APT55_RS02930 APT55_RS02935 PF01569 PAP2 superfamily APT55_RS02940 PF01925 APT55_RS02940 APT55_RS02945 PF07843 APT55_RS02945 APT55_RS02950 PF01925 APT55_RS02950 APT55_RS02960 PF02082 Transcriptional regulator APT55_RS02965 PF00005 ABC transporter APT55_RS02965 PF12857 APT55_RS02965 APT55_RS02970 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS02980 PF13531 Bacterial extracellular solute-binding protein APT55_RS02985 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein APT55_RS02995 PF13531 Bacterial extracellular solute-binding protein APT55_RS03005 PF01618 APT55_RS03005 APT55_RS03010 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS03015 PF14230 APT55_RS03015 APT55_RS03020 PF02308 APT55_RS03020 APT55_RS03025 PF00395 S-layer homology domain APT55_RS03025 PF04966 Carbohydrate-selective porin, OprB family APT55_RS03030 PF00296 Luciferase-like monooxygenase APT55_RS03045 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS03050 PF02082 Transcriptional regulator APT55_RS03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS03055 PF03466 LysR substrate binding domain APT55_RS03065 PF01145 SPFH domain / Band 7 family APT55_RS03070 PF03596 APT55_RS03070 APT55_RS03075 PF09383 NIL domain APT55_RS03080 PF00561 alpha/beta hydrolase fold APT55_RS03085 PF01053 Cys/Met metabolism PLP-dependent enzyme APT55_RS03090 PF00581 Rhodanese-like domain APT55_RS03095 PF00106 short chain dehydrogenase APT55_RS03110 PF06967 APT55_RS03110 APT55_RS03115 PF00510 Cytochrome c oxidase subunit III APT55_RS03120 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT55_RS03125 PF09990 APT55_RS03125 APT55_RS03130 PF04982 APT55_RS03130 APT55_RS03135 PF12805 APT55_RS03135 APT55_RS03135 PF13515 APT55_RS03135 APT55_RS03140 PF00384 Molybdopterin oxidoreductase APT55_RS03140 PF01568 Molydopterin dinucleotide binding domain APT55_RS03145 PF13180 PDZ domain APT55_RS03145 PF13365 Trypsin-like peptidase domain APT55_RS03155 PF07690 Major Facilitator Superfamily APT55_RS03160 PF00654 Voltage gated chloride channel APT55_RS03175 PF01609 Transposase DDE domain APT55_RS03185 PF00665 Integrase core domain APT55_RS03190 PF01695 IstB-like ATP binding protein APT55_RS03195 PF07799 APT55_RS03195 APT55_RS03200 PF01494 FAD binding domain APT55_RS03210 PF10989 APT55_RS03210 APT55_RS03220 PF11360 APT55_RS03220 APT55_RS03225 PF00300 Histidine phosphatase superfamily (branch 1) APT55_RS03235 PF00717 Peptidase S24-like APT55_RS03240 PF07690 Major Facilitator Superfamily APT55_RS03255 PF11741 AMIN domain APT55_RS03260 PF12770 APT55_RS03260 APT55_RS03260 PF13424 Tetratricopeptide repeat APT55_RS03265 PF06051 APT55_RS03265 APT55_RS03270 PF00072 Response regulator receiver domain APT55_RS03270 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03270 PF05226 APT55_RS03270 APT55_RS03275 PF00072 Response regulator receiver domain APT55_RS03275 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03285 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APT55_RS03295 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS03300 PF03976 Polyphosphate kinase 2 (PPK2) APT55_RS03305 PF09830 ATP adenylyltransferase APT55_RS03310 PF07386 APT55_RS03310 APT55_RS03315 PF00288 GHMP kinases N terminal domain APT55_RS03315 PF08544 GHMP kinases C terminal APT55_RS03320 PF02875 Mur ligase family, glutamate ligase domain APT55_RS03320 PF08245 Mur ligase middle domain APT55_RS03325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT55_RS03325 PF00364 Biotin-requiring enzyme APT55_RS03325 PF02817 e3 binding domain APT55_RS03330 PF07755 Protein of unknown function (DUF1611) APT55_RS03335 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APT55_RS03335 PF13378 Enolase C-terminal domain-like APT55_RS03340 PF03130 PBS lyase HEAT-like repeat APT55_RS03340 PF13646 HEAT repeats APT55_RS03350 PF00266 Aminotransferase class-V APT55_RS03360 PF02872 5'-nucleotidase, C-terminal domain APT55_RS03360 PF03372 Endonuclease/Exonuclease/phosphatase family APT55_RS03360 PF13449 Esterase-like activity of phytase APT55_RS03365 PF01551 Peptidase family M23 APT55_RS03370 PF02578 Multi-copper polyphenol oxidoreductase laccase APT55_RS03375 PF00494 Squalene/phytoene synthase APT55_RS03380 PF01039 Carboxyl transferase domain APT55_RS03385 PF14495 Cytochrome c-550 domain APT55_RS03390 PF14495 Cytochrome c-550 domain APT55_RS03395 PF00127 Copper binding proteins, plastocyanin/azurin family APT55_RS03400 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT55_RS03405 PF00400 WD domain, G-beta repeat APT55_RS03405 PF07676 WD40-like Beta Propeller Repeat APT55_RS03405 PF13676 TIR domain APT55_RS03410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS03410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT55_RS03415 PF00805 Pentapeptide repeats (8 copies) APT55_RS03415 PF13599 Pentapeptide repeats (9 copies) APT55_RS03420 PF02153 Prephenate dehydrogenase APT55_RS03425 PF05685 Putative restriction endonuclease APT55_RS03430 PF05685 Putative restriction endonuclease APT55_RS03435 PF00535 Glycosyl transferase family 2 APT55_RS03440 PF00764 Arginosuccinate synthase APT55_RS03455 PF03073 TspO/MBR family APT55_RS03460 PF12146 Putative lysophospholipase APT55_RS03465 PF00501 AMP-binding enzyme APT55_RS03470 PF00378 Enoyl-CoA hydratase/isomerase family APT55_RS03470 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APT55_RS03470 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APT55_RS03475 PF00108 Thiolase, N-terminal domain APT55_RS03475 PF02803 Thiolase, C-terminal domain APT55_RS03480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT55_RS03480 PF02770 Acyl-CoA dehydrogenase, middle domain APT55_RS03480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT55_RS03480 PF09317 APT55_RS03480 APT55_RS03485 PF10014 2OG-Fe dioxygenase APT55_RS03490 PF00266 Aminotransferase class-V APT55_RS03495 PF00155 Aminotransferase class I and II APT55_RS03500 PF00501 AMP-binding enzyme APT55_RS03500 PF16177 APT55_RS03500 APT55_RS03505 PF12981 Domain of Unknown Function with PDB structure (DUF3865) APT55_RS03510 PF04209 homogentisate 1,2-dioxygenase APT55_RS03515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS03515 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal APT55_RS03525 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT55_RS03525 PF09298 Fumarylacetoacetase N-terminal APT55_RS03530 PF01381 Helix-turn-helix APT55_RS03545 PF07690 Major Facilitator Superfamily APT55_RS03550 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT55_RS03550 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT55_RS03555 PF12849 PBP superfamily domain APT55_RS03560 PF01022 Bacterial regulatory protein, arsR family APT55_RS03565 PF02655 ATP-grasp domain APT55_RS03570 PF01112 Asparaginase APT55_RS03575 PF12697 Alpha/beta hydrolase family APT55_RS03580 PF00072 Response regulator receiver domain APT55_RS03580 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03585 PF00072 Response regulator receiver domain APT55_RS03585 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03585 PF00989 PAS fold APT55_RS03585 PF01590 GAF domain APT55_RS03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03595 PF00571 CBS domain APT55_RS03595 PF02672 CP12 domain APT55_RS03600 PF00805 Pentapeptide repeats (8 copies) APT55_RS03620 PF00011 Hsp20/alpha crystallin family APT55_RS03625 PF00122 E1-E2 ATPase APT55_RS03625 PF00689 Cation transporting ATPase, C-terminus APT55_RS03625 PF00690 Cation transporter/ATPase, N-terminus APT55_RS03625 PF00702 haloacid dehalogenase-like hydrolase APT55_RS03635 PF01594 APT55_RS03635 APT55_RS03640 PF00282 Pyridoxal-dependent decarboxylase conserved domain APT55_RS03650 PF00550 Phosphopantetheine attachment site APT55_RS03655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT55_RS03655 PF00364 Biotin-requiring enzyme APT55_RS03655 PF02817 e3 binding domain APT55_RS03665 PF00501 AMP-binding enzyme APT55_RS03665 PF13193 AMP-binding enzyme C-terminal domain APT55_RS03670 PF02627 Carboxymuconolactone decarboxylase family APT55_RS03675 PF00805 Pentapeptide repeats (8 copies) APT55_RS03680 PF00586 AIR synthase related protein, N-terminal domain APT55_RS03680 PF02769 AIR synthase related protein, C-terminal domain APT55_RS03690 PF01924 Hydrogenase formation hypA family APT55_RS03695 PF01455 HupF/HypC family APT55_RS03700 PF00708 Acylphosphatase APT55_RS03700 PF01300 Telomere recombination APT55_RS03700 PF07503 HypF finger APT55_RS03705 PF01155 Hydrogenase expression/synthesis hypA family APT55_RS03710 PF01750 Hydrogenase maturation protease APT55_RS03715 PF00374 Nickel-dependent hydrogenase APT55_RS03720 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT55_RS03725 PF00175 Oxidoreductase NAD-binding domain APT55_RS03725 PF00970 Oxidoreductase FAD-binding domain APT55_RS03725 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B APT55_RS03730 PF00027 Cyclic nucleotide-binding domain APT55_RS03735 PF17179 APT55_RS03735 APT55_RS03750 PF07719 Tetratricopeptide repeat APT55_RS03750 PF13431 Tetratricopeptide repeat APT55_RS03755 PF04008 Adenosine specific kinase APT55_RS03760 PF00999 Sodium/hydrogen exchanger family APT55_RS03765 PF00013 KH domain APT55_RS03765 PF00575 S1 RNA binding domain APT55_RS03765 PF01138 3' exoribonuclease family, domain 1 APT55_RS03765 PF03725 3' exoribonuclease family, domain 2 APT55_RS03765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APT55_RS03770 PF00176 SNF2 family N-terminal domain APT55_RS03770 PF00271 Helicase conserved C-terminal domain APT55_RS03770 PF12419 APT55_RS03770 APT55_RS03775 PF04434 APT55_RS03775 APT55_RS03780 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella APT55_RS03785 PF00121 Triosephosphate isomerase APT55_RS03800 PF00171 Aldehyde dehydrogenase family APT55_RS03805 PF00999 Sodium/hydrogen exchanger family APT55_RS03805 PF02254 TrkA-N domain APT55_RS03810 PF00106 short chain dehydrogenase APT55_RS03820 PF01121 Dephospho-CoA kinase APT55_RS03825 PF13231 APT55_RS03825 APT55_RS03835 PF01979 Amidohydrolase family APT55_RS03840 PF00892 EamA-like transporter family APT55_RS03845 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03850 PF04273 Putative phosphatase (DUF442) APT55_RS03855 PF00753 Metallo-beta-lactamase superfamily APT55_RS03855 PF16123 APT55_RS03855 APT55_RS03865 PF00534 Glycosyl transferases group 1 APT55_RS03870 PF13692 Glycosyl transferases group 1 APT55_RS03875 PF00534 Glycosyl transferases group 1 APT55_RS03875 PF13439 Glycosyltransferase Family 4 APT55_RS03880 PF00005 ABC transporter APT55_RS03880 PF00664 ABC transporter transmembrane region APT55_RS03885 PF00852 Glycosyltransferase family 10 (fucosyltransferase) APT55_RS03905 PF16363 APT55_RS03905 APT55_RS03915 PF00355 Rieske [2Fe-2S] domain APT55_RS03915 PF08417 APT55_RS03915 APT55_RS03920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS03920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT55_RS03930 PF13437 HlyD family secretion protein APT55_RS03930 PF13533 Biotin-lipoyl like APT55_RS03935 PF00005 ABC transporter APT55_RS03935 PF00664 ABC transporter transmembrane region APT55_RS03935 PF03412 Peptidase C39 family APT55_RS03940 PF01241 Photosystem I psaG / psaK APT55_RS03945 PF00072 Response regulator receiver domain APT55_RS03950 PF00072 Response regulator receiver domain APT55_RS03955 PF01584 CheW-like domain APT55_RS03960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS03960 PF00672 HAMP domain APT55_RS03960 PF01590 GAF domain APT55_RS03960 PF02743 Cache domain APT55_RS03965 PF00072 Response regulator receiver domain APT55_RS03965 PF01584 CheW-like domain APT55_RS03965 PF01627 Hpt domain APT55_RS03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS03970 PF00171 Aldehyde dehydrogenase family APT55_RS03970 PF01619 Proline dehydrogenase APT55_RS03975 PF00106 short chain dehydrogenase APT55_RS03980 PF14328 APT55_RS03980 APT55_RS03990 PF00005 ABC transporter APT55_RS03995 PF02470 APT55_RS03995 APT55_RS04000 PF03551 Transcriptional regulator PadR-like family APT55_RS04015 PF06305 APT55_RS04015 APT55_RS04020 PF01202 Shikimate kinase APT55_RS04025 PF01042 Endoribonuclease L-PSP APT55_RS04030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT55_RS04035 PF00999 Sodium/hydrogen exchanger family APT55_RS04040 PF00582 Universal stress protein family APT55_RS04050 PF00892 EamA-like transporter family APT55_RS04055 PF01593 Flavin containing amine oxidoreductase APT55_RS04060 PF08855 APT55_RS04060 APT55_RS04065 PF00905 Penicillin binding protein transpeptidase domain APT55_RS04065 PF00912 Transglycosylase APT55_RS04070 PF00579 tRNA synthetases class I (W and Y) APT55_RS04070 PF01479 S4 domain APT55_RS04075 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APT55_RS04100 PF03683 APT55_RS04100 APT55_RS04110 PF02371 APT55_RS04110 APT55_RS04170 PF13481 AAA domain APT55_RS04190 PF13560 Helix-turn-helix domain APT55_RS04215 PF01548 APT55_RS04215 APT55_RS04215 PF02371 APT55_RS04215 APT55_RS04220 PF00737 Photosystem II 10 kDa phosphoprotein APT55_RS04225 PF02416 mttA/Hcf106 family APT55_RS04230 PF01195 Peptidyl-tRNA hydrolase APT55_RS04235 PF11344 APT55_RS04235 APT55_RS04240 PF03652 Uncharacterised protein family (UPF0081) APT55_RS04245 PF11283 APT55_RS04245 APT55_RS04250 PF00027 Cyclic nucleotide-binding domain APT55_RS04250 PF13545 Crp-like helix-turn-helix domain APT55_RS04255 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS04260 PF10138 APT55_RS04260 APT55_RS04265 PF00140 Sigma-70 factor, region 1 APT55_RS04265 PF04539 Sigma-70 region 3 APT55_RS04265 PF04542 Sigma-70 region 2 APT55_RS04265 PF04545 Sigma-70, region 4 APT55_RS04270 PF04255 Protein of unknown function (DUF433) APT55_RS04280 PF00581 Rhodanese-like domain APT55_RS04290 PF00196 Bacterial regulatory proteins, luxR family APT55_RS04300 PF05016 Plasmid stabilisation system protein APT55_RS04305 PF15615 APT55_RS04305 APT55_RS04310 PF07690 Major Facilitator Superfamily APT55_RS04315 PF00756 Putative esterase APT55_RS04325 PF13181 Tetratricopeptide repeat APT55_RS04325 PF13414 TPR repeat APT55_RS04325 PF13431 Tetratricopeptide repeat APT55_RS04335 PF07286 Protein of unknown function (DUF1445) APT55_RS04340 PF12158 APT55_RS04340 APT55_RS04345 PF01968 Hydantoinase/oxoprolinase APT55_RS04345 PF02538 APT55_RS04345 APT55_RS04345 PF05378 APT55_RS04345 APT55_RS04350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS04350 PF03466 LysR substrate binding domain APT55_RS04360 PF00400 WD domain, G-beta repeat APT55_RS04360 PF00656 Caspase domain APT55_RS04365 PF01520 N-acetylmuramoyl-L-alanine amidase APT55_RS04365 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APT55_RS04375 PF00656 Caspase domain APT55_RS04375 PF14326 APT55_RS04375 APT55_RS04390 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS04400 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS04410 PF13466 STAS domain APT55_RS04415 PF09335 APT55_RS04415 APT55_RS04425 PF00293 NUDIX domain APT55_RS04430 PF00270 DEAD/DEAH box helicase APT55_RS04430 PF00271 Helicase conserved C-terminal domain APT55_RS04430 PF17191 APT55_RS04430 APT55_RS04440 PF13476 AAA domain APT55_RS04440 PF13558 Putative exonuclease SbcCD, C subunit APT55_RS04445 PF01156 Inosine-uridine preferring nucleoside hydrolase APT55_RS04455 PF00392 Bacterial regulatory proteins, gntR family APT55_RS04455 PF07702 UTRA domain APT55_RS04460 PF00487 APT55_RS04460 APT55_RS04465 PF00561 alpha/beta hydrolase fold APT55_RS04470 PF00120 Glutamine synthetase, catalytic domain APT55_RS04475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT55_RS04480 PF12833 Helix-turn-helix domain APT55_RS04485 PF01894 Uncharacterised protein family UPF0047 APT55_RS04500 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS04500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04505 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT55_RS04510 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT55_RS04510 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS04515 PF00005 ABC transporter APT55_RS04525 PF03807 NADP oxidoreductase coenzyme F420-dependent APT55_RS04525 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT55_RS04530 PF04472 Protein of unknown function (DUF552) APT55_RS04540 PF01168 Alanine racemase, N-terminal domain APT55_RS04545 PF12058 Protein of unknown function (DUF3539) APT55_RS04550 PF00186 Dihydrofolate reductase APT55_RS04555 PF00140 Sigma-70 factor, region 1 APT55_RS04555 PF04539 Sigma-70 region 3 APT55_RS04555 PF04542 Sigma-70 region 2 APT55_RS04555 PF04545 Sigma-70, region 4 APT55_RS04560 PF00072 Response regulator receiver domain APT55_RS04565 PF06508 Queuosine biosynthesis protein QueC APT55_RS04570 PF13417 Glutathione S-transferase, N-terminal domain APT55_RS04575 PF06779 APT55_RS04575 APT55_RS04580 PF13454 FAD-NAD(P)-binding APT55_RS04585 PF13426 PAS domain APT55_RS04590 PF01609 Transposase DDE domain APT55_RS04595 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS04595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04600 PF01494 FAD binding domain APT55_RS04605 PF01709 Transcriptional regulator APT55_RS04610 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS04615 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS04620 PF13416 Bacterial extracellular solute-binding protein APT55_RS04625 PF13416 Bacterial extracellular solute-binding protein APT55_RS04630 PF08869 XisI protein APT55_RS04635 PF13191 AAA ATPase domain APT55_RS04645 PF13676 TIR domain APT55_RS04655 PF01844 HNH endonuclease APT55_RS04660 PF00535 Glycosyl transferase family 2 APT55_RS04665 PF00534 Glycosyl transferases group 1 APT55_RS04680 PF00534 Glycosyl transferases group 1 APT55_RS04680 PF13579 Glycosyl transferase 4-like domain APT55_RS04690 PF00156 Phosphoribosyl transferase domain APT55_RS04695 PF03167 Uracil DNA glycosylase superfamily APT55_RS04700 PF01471 Putative peptidoglycan binding domain APT55_RS04705 PF04002 RadC-like JAB domain APT55_RS04710 PF00072 Response regulator receiver domain APT55_RS04710 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS04710 PF01590 GAF domain APT55_RS04710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04710 PF08447 PAS fold APT55_RS04710 PF08448 PAS fold APT55_RS04710 PF13188 PAS domain APT55_RS04715 PF08241 Methyltransferase domain APT55_RS04720 PF03358 NADPH-dependent FMN reductase APT55_RS04725 PF08239 Bacterial SH3 domain APT55_RS04730 PF00400 WD domain, G-beta repeat APT55_RS04740 PF01047 MarR family APT55_RS04745 PF00578 AhpC/TSA family APT55_RS04745 PF10417 C-terminal domain of 1-Cys peroxiredoxin APT55_RS04750 PF00639 PPIC-type PPIASE domain APT55_RS04755 PF00005 ABC transporter APT55_RS04755 PF00664 ABC transporter transmembrane region APT55_RS04755 PF03412 Peptidase C39 family APT55_RS04760 PF00753 Metallo-beta-lactamase superfamily APT55_RS04765 PF13409 Glutathione S-transferase, N-terminal domain APT55_RS04765 PF13410 Glutathione S-transferase, C-terminal domain APT55_RS04770 PF00534 Glycosyl transferases group 1 APT55_RS04775 PF01520 N-acetylmuramoyl-L-alanine amidase APT55_RS04775 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase APT55_RS04780 PF12697 Alpha/beta hydrolase family APT55_RS04785 PF00805 Pentapeptide repeats (8 copies) APT55_RS04790 PF00805 Pentapeptide repeats (8 copies) APT55_RS04805 PF01947 Protein of unknown function (DUF98) APT55_RS04815 PF06150 ChaB APT55_RS04820 PF03632 Glycosyl hydrolase family 65 central catalytic domain APT55_RS04820 PF03633 Glycosyl hydrolase family 65, C-terminal domain APT55_RS04820 PF03636 Glycosyl hydrolase family 65, N-terminal domain APT55_RS04830 PF00589 Phage integrase family APT55_RS04830 PF13495 Phage integrase, N-terminal SAM-like domain APT55_RS04835 PF00742 Homoserine dehydrogenase APT55_RS04835 PF01842 ACT domain APT55_RS04835 PF03447 Homoserine dehydrogenase, NAD binding domain APT55_RS04845 PF04187 Protein of unknown function, DUF399 APT55_RS04850 PF01066 CDP-alcohol phosphatidyltransferase APT55_RS04855 PF02397 APT55_RS04855 APT55_RS04865 PF00027 Cyclic nucleotide-binding domain APT55_RS04865 PF13545 Crp-like helix-turn-helix domain APT55_RS04870 PF02754 APT55_RS04870 APT55_RS04870 PF13183 4Fe-4S dicluster domain APT55_RS04875 PF01565 FAD binding domain APT55_RS04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04880 PF07568 APT55_RS04880 APT55_RS04880 PF08447 PAS fold APT55_RS04880 PF08448 PAS fold APT55_RS04880 PF13188 PAS domain APT55_RS04880 PF13426 PAS domain APT55_RS04885 PF00072 Response regulator receiver domain APT55_RS04885 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS04885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS04890 PF00072 Response regulator receiver domain APT55_RS04895 PF00834 Ribulose-phosphate 3 epimerase family APT55_RS04900 PF00082 Subtilase family APT55_RS04905 PF00079 Serpin (serine protease inhibitor) APT55_RS04910 PF00400 WD domain, G-beta repeat APT55_RS04910 PF00931 NB-ARC domain APT55_RS04915 PF00196 Bacterial regulatory proteins, luxR family APT55_RS04920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT55_RS04925 PF09721 APT55_RS04925 APT55_RS04935 PF02563 Polysaccharide biosynthesis/export protein APT55_RS04935 PF10531 SLBB domain APT55_RS04940 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS04945 PF02310 B12 binding domain APT55_RS04945 PF04055 Radical SAM superfamily APT55_RS04945 PF13282 APT55_RS04945 APT55_RS04950 PF02798 Glutathione S-transferase, N-terminal domain APT55_RS04950 PF13410 Glutathione S-transferase, C-terminal domain APT55_RS04955 PF01609 Transposase DDE domain APT55_RS04965 PF02463 RecF/RecN/SMC N terminal domain APT55_RS04970 PF03109 APT55_RS04970 APT55_RS04975 PF00005 ABC transporter APT55_RS04975 PF12848 ABC transporter APT55_RS04975 PF16326 APT55_RS04975 APT55_RS04980 PF13529 Peptidase_C39 like family APT55_RS04985 PF00578 AhpC/TSA family APT55_RS04990 PF04536 TLP18 APT55_RS04995 PF03061 Thioesterase superfamily APT55_RS05000 PF00557 Metallopeptidase family M24 APT55_RS05010 PF01594 APT55_RS05010 APT55_RS05015 PF00072 Response regulator receiver domain APT55_RS05015 PF00563 EAL domain APT55_RS05015 PF00990 GGDEF domain APT55_RS05020 PF14516 APT55_RS05020 APT55_RS05025 PF00400 WD domain, G-beta repeat APT55_RS05025 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APT55_RS05025 PF14516 APT55_RS05025 APT55_RS05030 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT55_RS05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS05035 PF07568 APT55_RS05035 APT55_RS05035 PF08447 PAS fold APT55_RS05040 PF00072 Response regulator receiver domain APT55_RS05040 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS05040 PF08448 PAS fold APT55_RS05045 PF00425 chorismate binding enzyme APT55_RS05045 PF04715 Anthranilate synthase component I, N terminal region APT55_RS05050 PF00072 Response regulator receiver domain APT55_RS05050 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS05050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS05050 PF08448 PAS fold APT55_RS05050 PF13188 PAS domain APT55_RS05055 PF00072 Response regulator receiver domain APT55_RS05055 PF00989 PAS fold APT55_RS05060 PF01739 CheR methyltransferase, SAM binding domain APT55_RS05060 PF03705 CheR methyltransferase, all-alpha domain APT55_RS05065 PF00072 Response regulator receiver domain APT55_RS05070 PF02446 4-alpha-glucanotransferase APT55_RS05075 PF00128 Alpha amylase, catalytic domain APT55_RS05075 PF16657 APT55_RS05075 APT55_RS05080 PF08814 XisH protein APT55_RS05085 PF08869 XisI protein APT55_RS05090 PF02361 Cobalt transport protein APT55_RS05095 PF01926 50S ribosome-binding GTPase APT55_RS05095 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT55_RS05100 PF03435 Saccharopine dehydrogenase APT55_RS05110 PF00041 Fibronectin type III domain APT55_RS05115 PF14234 APT55_RS05115 APT55_RS05120 PF13347 MFS/sugar transport protein APT55_RS05125 PF01255 Putative undecaprenyl diphosphate synthase APT55_RS05135 PF00931 NB-ARC domain APT55_RS05135 PF13181 Tetratricopeptide repeat APT55_RS05135 PF13424 Tetratricopeptide repeat APT55_RS05140 PF01380 SIS domain APT55_RS05140 PF13522 Glutamine amidotransferase domain APT55_RS05145 PF04055 Radical SAM superfamily APT55_RS05145 PF13394 4Fe-4S single cluster domain APT55_RS05150 PF01242 6-pyruvoyl tetrahydropterin synthase APT55_RS05155 PF14105 APT55_RS05155 APT55_RS05160 PF00128 Alpha amylase, catalytic domain APT55_RS05160 PF11941 Domain of unknown function (DUF3459) APT55_RS05165 PF06150 ChaB APT55_RS05170 PF00583 Acetyltransferase (GNAT) family APT55_RS05175 PF09626 Dihaem cytochrome c APT55_RS05180 PF01043 SecA preprotein cross-linking domain APT55_RS05180 PF07516 SecA Wing and Scaffold domain APT55_RS05180 PF07517 SecA DEAD-like domain APT55_RS05185 PF01134 Glucose inhibited division protein A APT55_RS05195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS05195 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT55_RS05205 PF11910 APT55_RS05205 APT55_RS05210 PF00056 lactate/malate dehydrogenase, NAD binding domain APT55_RS05210 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APT55_RS05225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT55_RS05230 PF01435 Peptidase family M48 APT55_RS05235 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS05240 PF13432 Tetratricopeptide repeat APT55_RS05245 PF08241 Methyltransferase domain APT55_RS05250 PF00106 short chain dehydrogenase APT55_RS05260 PF00141 Peroxidase APT55_RS05265 PF00805 Pentapeptide repeats (8 copies) APT55_RS05270 PF00487 APT55_RS05270 APT55_RS05275 PF01218 Coproporphyrinogen III oxidase APT55_RS05280 PF00805 Pentapeptide repeats (8 copies) APT55_RS05285 PF00124 Photosynthetic reaction centre protein APT55_RS05290 PF11320 APT55_RS05290 APT55_RS05295 PF01022 Bacterial regulatory protein, arsR family APT55_RS05300 PF00248 Aldo/keto reductase family APT55_RS05310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT55_RS05320 PF05958 tRNA (Uracil-5-)-methyltransferase APT55_RS05325 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS05325 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APT55_RS05340 PF01891 Cobalt uptake substrate-specific transmembrane region APT55_RS05345 PF02553 APT55_RS05345 APT55_RS05350 PF02361 Cobalt transport protein APT55_RS05355 PF00005 ABC transporter APT55_RS05370 PF00395 S-layer homology domain APT55_RS05395 PF01300 Telomere recombination APT55_RS05400 PF01969 Protein of unknown function DUF111 APT55_RS05405 PF00805 Pentapeptide repeats (8 copies) APT55_RS05405 PF13599 Pentapeptide repeats (9 copies) APT55_RS05410 PF00072 Response regulator receiver domain APT55_RS05410 PF00486 Transcriptional regulatory protein, C terminal APT55_RS05410 PF01627 Hpt domain APT55_RS05415 PF00072 Response regulator receiver domain APT55_RS05415 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS05415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS05415 PF13426 PAS domain APT55_RS05420 PF00072 Response regulator receiver domain APT55_RS05425 PF04773 FecR protein APT55_RS05430 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS05430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS05430 PF05226 APT55_RS05430 APT55_RS05435 PF00583 Acetyltransferase (GNAT) family APT55_RS05440 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase APT55_RS05445 PF12836 Helix-hairpin-helix motif APT55_RS05450 PF09851 APT55_RS05450 APT55_RS05455 PF11103 APT55_RS05455 APT55_RS05465 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS05470 PF07728 AAA domain (dynein-related subfamily) APT55_RS05480 PF13676 TIR domain APT55_RS05485 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT55_RS05485 PF06827 Zinc finger found in FPG and IleRS APT55_RS05485 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT55_RS05490 PF02811 PHP domain APT55_RS05495 PF06325 Ribosomal protein L11 methyltransferase (PrmA) APT55_RS05500 PF07995 Glucose / Sorbosone dehydrogenase APT55_RS05505 PF11236 APT55_RS05505 APT55_RS05515 PF06051 APT55_RS05515 APT55_RS05520 PF05226 APT55_RS05520 APT55_RS05520 PF12770 APT55_RS05520 APT55_RS05525 PF08852 APT55_RS05525 APT55_RS05530 PF12770 APT55_RS05530 APT55_RS05535 PF00258 Flavodoxin APT55_RS05545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS05565 PF00042 Globin APT55_RS05575 PF08241 Methyltransferase domain APT55_RS05585 PF01850 PIN domain APT55_RS05590 PF00459 Inositol monophosphatase family APT55_RS05600 PF00294 pfkB family carbohydrate kinase APT55_RS05605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS05615 PF00892 EamA-like transporter family APT55_RS05620 PF04134 APT55_RS05620 APT55_RS05630 PF12899 APT55_RS05630 APT55_RS05640 PF04248 Domain of unknown function (DUF427) APT55_RS05645 PF00501 AMP-binding enzyme APT55_RS05650 PF11068 YlqD protein APT55_RS05655 PF05685 Putative restriction endonuclease APT55_RS05665 PF00515 Tetratricopeptide repeat APT55_RS05665 PF13181 Tetratricopeptide repeat APT55_RS05665 PF13432 Tetratricopeptide repeat APT55_RS05670 PF00462 Glutaredoxin APT55_RS05670 PF03960 ArsC family APT55_RS05675 PF09996 Uncharacterized protein conserved in bacteria (DUF2237) APT55_RS05680 PF03663 Glycosyl hydrolase family 76 APT55_RS05685 PF00152 tRNA synthetases class II (D, K and N) APT55_RS05685 PF01336 OB-fold nucleic acid binding domain APT55_RS05685 PF02938 GAD domain APT55_RS05690 PF06485 APT55_RS05690 APT55_RS05700 PF01734 Patatin-like phospholipase APT55_RS05715 PF00101 Ribulose bisphosphate carboxylase, small chain APT55_RS05715 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS05720 PF03319 Ethanolamine utilisation protein EutN/carboxysome APT55_RS05725 PF00936 BMC domain APT55_RS05730 PF00936 BMC domain APT55_RS05735 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS05735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT55_RS05740 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS05745 PF10216 APT55_RS05745 APT55_RS05755 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS05755 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT55_RS05760 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS05760 PF01059 APT55_RS05760 APT55_RS05765 PF10216 APT55_RS05765 APT55_RS05770 PF02469 Fasciclin domain APT55_RS05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS05775 PF03466 LysR substrate binding domain APT55_RS05780 PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term APT55_RS05780 PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus APT55_RS05785 PF01909 Nucleotidyltransferase domain APT55_RS05790 PF02517 CAAX protease self-immunity APT55_RS05795 PF05685 Putative restriction endonuclease APT55_RS05800 PF05016 Plasmid stabilisation system protein APT55_RS05815 PF01541 GIY-YIG catalytic domain APT55_RS05825 PF05729 NACHT domain APT55_RS05825 PF13676 TIR domain APT55_RS05830 PF08869 XisI protein APT55_RS05840 PF01259 SAICAR synthetase APT55_RS05845 PF01103 Surface antigen APT55_RS05845 PF07244 Surface antigen variable number repeat APT55_RS05845 PF08479 POTRA domain, ShlB-type APT55_RS05850 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APT55_RS05855 PF07977 FabA-like domain APT55_RS05860 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS05860 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APT55_RS05865 PF02684 APT55_RS05865 APT55_RS05870 PF01040 UbiA prenyltransferase family APT55_RS05875 PF02628 APT55_RS05875 APT55_RS05880 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT55_RS05880 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APT55_RS05885 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT55_RS05890 PF00510 Cytochrome c oxidase subunit III APT55_RS05900 PF16576 APT55_RS05900 APT55_RS05905 PF00873 AcrB/AcrD/AcrF family APT55_RS05910 PF00072 Response regulator receiver domain APT55_RS05910 PF00486 Transcriptional regulatory protein, C terminal APT55_RS05950 PF01726 LexA DNA binding domain APT55_RS05995 PF10929 APT55_RS05995 APT55_RS06000 PF05869 APT55_RS06000 APT55_RS06030 PF01381 Helix-turn-helix APT55_RS06035 PF13560 Helix-turn-helix domain APT55_RS06045 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS06075 PF10892 APT55_RS06075 APT55_RS06085 PF00990 GGDEF domain APT55_RS06100 PF13443 Cro/C1-type HTH DNA-binding domain APT55_RS06105 PF01541 GIY-YIG catalytic domain APT55_RS06105 PF13560 Helix-turn-helix domain APT55_RS06145 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS06145 PF00672 HAMP domain APT55_RS06145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS06160 PF14337 APT55_RS06160 APT55_RS06220 PF01541 GIY-YIG catalytic domain APT55_RS06235 PF01551 Peptidase family M23 APT55_RS06315 PF13560 Helix-turn-helix domain APT55_RS06320 PF05685 Putative restriction endonuclease APT55_RS06330 PF10145 APT55_RS06330 APT55_RS06375 PF04542 Sigma-70 region 2 APT55_RS06395 PF04434 APT55_RS06395 APT55_RS06405 PF03592 Terminase small subunit APT55_RS06410 PF03237 Terminase-like family APT55_RS06435 PF13560 Helix-turn-helix domain APT55_RS06495 PF00575 S1 RNA binding domain APT55_RS06500 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS06505 PF00072 Response regulator receiver domain APT55_RS06510 PF01551 Peptidase family M23 APT55_RS06515 PF00504 Chlorophyll A-B binding protein APT55_RS06535 PF00072 Response regulator receiver domain APT55_RS06535 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS06535 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS06535 PF01590 GAF domain APT55_RS06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS06540 PF03477 ATP cone domain APT55_RS06555 PF09150 Orange carotenoid protein, N-terminal APT55_RS06560 PF08241 Methyltransferase domain APT55_RS06565 PF05050 Methyltransferase FkbM domain APT55_RS06570 PF13414 TPR repeat APT55_RS06570 PF13844 Glycosyl transferase family 41 APT55_RS06575 PF13633 Prokaryotic N-terminal methylation site APT55_RS06575 PF16734 APT55_RS06575 APT55_RS06580 PF13847 Methyltransferase domain APT55_RS06585 PF05685 Putative restriction endonuclease APT55_RS06590 PF04483 APT55_RS06590 APT55_RS06600 PF00226 DnaJ domain APT55_RS06600 PF01556 DnaJ C terminal domain APT55_RS06605 PF00012 Hsp70 protein APT55_RS06610 PF03734 L,D-transpeptidase catalytic domain APT55_RS06615 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin APT55_RS06625 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS06630 PF07082 APT55_RS06630 APT55_RS06635 PF00487 APT55_RS06635 APT55_RS06645 PF07885 Ion channel APT55_RS06655 PF12900 Pyridoxamine 5'-phosphate oxidase APT55_RS06660 PF00582 Universal stress protein family APT55_RS06665 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS06670 PF00582 Universal stress protein family APT55_RS06680 PF00140 Sigma-70 factor, region 1 APT55_RS06680 PF04539 Sigma-70 region 3 APT55_RS06680 PF04542 Sigma-70 region 2 APT55_RS06680 PF04545 Sigma-70, region 4 APT55_RS06685 PF01522 Polysaccharide deacetylase APT55_RS06690 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT55_RS06690 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT55_RS06705 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS06715 PF10017 APT55_RS06715 APT55_RS06720 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS06720 PF12867 DinB superfamily APT55_RS06725 PF13230 Glutamine amidotransferases class-II APT55_RS06730 PF04241 APT55_RS06730 APT55_RS06735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APT55_RS06740 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT55_RS06745 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APT55_RS06750 PF00301 Rubredoxin APT55_RS06755 PF14870 Photosynthesis system II assembly factor YCF48 APT55_RS06760 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits APT55_RS06760 PF00284 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit APT55_RS06765 PF00283 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits APT55_RS06770 PF02419 PsbL protein APT55_RS06775 PF01788 PsbJ APT55_RS06780 PF00796 Photosystem I reaction centre subunit VIII APT55_RS06790 PF02605 Photosystem I reaction centre subunit XI APT55_RS06795 PF05960 Bacterial protein of unknown function (DUF885) APT55_RS06805 PF00122 E1-E2 ATPase APT55_RS06805 PF00702 haloacid dehalogenase-like hydrolase APT55_RS06810 PF07726 ATPase family associated with various cellular activities (AAA) APT55_RS06815 PF10990 APT55_RS06815 APT55_RS06820 PF05140 APT55_RS06820 APT55_RS06825 PF02683 APT55_RS06825 APT55_RS06830 PF01098 APT55_RS06830 APT55_RS06845 PF13470 APT55_RS06845 APT55_RS06850 PF00149 Calcineurin-like phosphoesterase APT55_RS06855 PF00226 DnaJ domain APT55_RS06870 PF02633 Creatinine amidohydrolase APT55_RS06880 PF01479 S4 domain APT55_RS06885 PF00571 CBS domain APT55_RS06885 PF00582 Universal stress protein family APT55_RS06885 PF00654 Voltage gated chloride channel APT55_RS06890 PF01475 Ferric uptake regulator family APT55_RS06895 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APT55_RS06900 PF13507 CobB/CobQ-like glutamine amidotransferase domain APT55_RS06905 PF00124 Photosynthetic reaction centre protein APT55_RS06910 PF13000 APT55_RS06910 APT55_RS06915 PF02237 Biotin protein ligase C terminal domain APT55_RS06915 PF03099 Biotin/lipoate A/B protein ligase family APT55_RS06920 PF00072 Response regulator receiver domain APT55_RS06920 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS06925 PF00072 Response regulator receiver domain APT55_RS06925 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS06925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS06925 PF02743 Cache domain APT55_RS06930 PF00501 AMP-binding enzyme APT55_RS06930 PF00550 Phosphopantetheine attachment site APT55_RS06930 PF07993 Male sterility protein APT55_RS06930 PF08242 Methyltransferase domain APT55_RS06935 PF13453 APT55_RS06935 APT55_RS06945 PF02824 TGS domain APT55_RS06945 PF04607 Region found in RelA / SpoT proteins APT55_RS06945 PF13291 ACT domain APT55_RS06945 PF13328 HD domain APT55_RS06950 PF08501 Shikimate dehydrogenase substrate binding domain APT55_RS06955 PF03776 Septum formation topological specificity factor MinE APT55_RS06960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS06965 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT55_RS06965 PF06827 Zinc finger found in FPG and IleRS APT55_RS06965 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT55_RS06970 PF02427 Photosystem I reaction centre subunit IV / PsaE APT55_RS06980 PF06386 APT55_RS06980 APT55_RS06985 PF12773 APT55_RS06985 APT55_RS06990 PF03992 Antibiotic biosynthesis monooxygenase APT55_RS06995 PF09622 APT55_RS06995 APT55_RS07005 PF00487 APT55_RS07005 APT55_RS07010 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS07015 PF04955 APT55_RS07015 APT55_RS07020 PF02211 Nitrile hydratase beta subunit APT55_RS07025 PF02979 Nitrile hydratase, alpha chain APT55_RS07030 PF02211 Nitrile hydratase beta subunit APT55_RS07035 PF06496 APT55_RS07035 APT55_RS07040 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07040 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS07045 PF03466 LysR substrate binding domain APT55_RS07050 PF08241 Methyltransferase domain APT55_RS07055 PF01323 DSBA-like thioredoxin domain APT55_RS07060 PF00440 Bacterial regulatory proteins, tetR family APT55_RS07060 PF16925 APT55_RS07060 APT55_RS07065 PF02560 Cyanate lyase C-terminal domain APT55_RS07070 PF00005 ABC transporter APT55_RS07075 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS07080 PF13379 NMT1-like family APT55_RS07085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT55_RS07085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT55_RS07090 PF02566 OsmC-like protein APT55_RS07095 PF07073 Modulator of Rho-dependent transcription termination (ROF) APT55_RS07100 PF02503 Polyphosphate kinase middle domain APT55_RS07100 PF13089 Polyphosphate kinase N-terminal domain APT55_RS07100 PF13090 Polyphosphate kinase C-terminal domain APT55_RS07110 PF00122 E1-E2 ATPase APT55_RS07110 PF00689 Cation transporting ATPase, C-terminus APT55_RS07110 PF00690 Cation transporter/ATPase, N-terminus APT55_RS07110 PF00702 haloacid dehalogenase-like hydrolase APT55_RS07115 PF00005 ABC transporter APT55_RS07115 PF00664 ABC transporter transmembrane region APT55_RS07120 PF00005 ABC transporter APT55_RS07120 PF00664 ABC transporter transmembrane region APT55_RS07125 PF00072 Response regulator receiver domain APT55_RS07125 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07125 PF13185 GAF domain APT55_RS07130 PF14518 Iron-containing redox enzyme APT55_RS07135 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT55_RS07140 PF13649 Methyltransferase domain APT55_RS07145 PF05685 Putative restriction endonuclease APT55_RS07155 PF00005 ABC transporter APT55_RS07155 PF00664 ABC transporter transmembrane region APT55_RS07160 PF13439 Glycosyltransferase Family 4 APT55_RS07160 PF13692 Glycosyl transferases group 1 APT55_RS07165 PF00534 Glycosyl transferases group 1 APT55_RS07165 PF13439 Glycosyltransferase Family 4 APT55_RS07170 PF04101 Glycosyltransferase family 28 C-terminal domain APT55_RS07175 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07175 PF00672 HAMP domain APT55_RS07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07180 PF00072 Response regulator receiver domain APT55_RS07180 PF00486 Transcriptional regulatory protein, C terminal APT55_RS07185 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APT55_RS07190 PF01227 GTP cyclohydrolase I APT55_RS07195 PF00106 short chain dehydrogenase APT55_RS07200 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APT55_RS07205 PF08241 Methyltransferase domain APT55_RS07215 PF13231 APT55_RS07215 APT55_RS07220 PF00535 Glycosyl transferase family 2 APT55_RS07225 PF01488 Shikimate / quinate 5-dehydrogenase APT55_RS07230 PF11266 Protein of unknown function (DUF3066) APT55_RS07235 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS07240 PF01297 Periplasmic solute binding protein family APT55_RS07245 PF00005 ABC transporter APT55_RS07250 PF00950 APT55_RS07250 APT55_RS07255 PF00400 WD domain, G-beta repeat APT55_RS07255 PF08662 Eukaryotic translation initiation factor eIF2A APT55_RS07260 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07260 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07270 PF00490 Delta-aminolevulinic acid dehydratase APT55_RS07275 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) APT55_RS07280 PF01475 Ferric uptake regulator family APT55_RS07285 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07290 PF12850 Calcineurin-like phosphoesterase superfamily domain APT55_RS07295 PF12850 Calcineurin-like phosphoesterase superfamily domain APT55_RS07300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT55_RS07300 PF03129 Anticodon binding domain APT55_RS07300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT55_RS07305 PF07845 APT55_RS07305 APT55_RS07310 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07310 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07315 PF01227 GTP cyclohydrolase I APT55_RS07320 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS07320 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS07325 PF01502 Phosphoribosyl-AMP cyclohydrolase APT55_RS07330 PF00101 Ribulose bisphosphate carboxylase, small chain APT55_RS07330 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS07335 PF01406 tRNA synthetases class I (C) catalytic domain APT55_RS07335 PF09190 DALR domain APT55_RS07340 PF08241 Methyltransferase domain APT55_RS07345 PF05019 Coenzyme Q (ubiquinone) biosynthesis protein Coq4 APT55_RS07350 PF00699 Urease beta subunit APT55_RS07355 PF00547 Urease, gamma subunit APT55_RS07360 PF01774 UreD urease accessory protein APT55_RS07365 PF09912 APT55_RS07365 APT55_RS07370 PF00535 Glycosyl transferase family 2 APT55_RS07375 PF04055 Radical SAM superfamily APT55_RS07375 PF12345 APT55_RS07375 APT55_RS07375 PF13353 4Fe-4S single cluster domain APT55_RS07380 PF02627 Carboxymuconolactone decarboxylase family APT55_RS07385 PF01078 Magnesium chelatase, subunit ChlI APT55_RS07385 PF13335 APT55_RS07385 APT55_RS07385 PF13541 Subunit ChlI of Mg-chelatase APT55_RS07390 PF06051 APT55_RS07390 APT55_RS07395 PF12770 APT55_RS07395 APT55_RS07400 PF05860 haemagglutination activity domain APT55_RS07405 PF05860 haemagglutination activity domain APT55_RS07410 PF05860 haemagglutination activity domain APT55_RS07415 PF13599 Pentapeptide repeats (9 copies) APT55_RS07420 PF04226 APT55_RS07420 APT55_RS07425 PF00076 RNA recognition motif APT55_RS07435 PF06745 KaiC APT55_RS07440 PF07689 KaiB domain APT55_RS07445 PF07688 KaiA domain APT55_RS07450 PF00072 Response regulator receiver domain APT55_RS07450 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07455 PF02633 Creatinine amidohydrolase APT55_RS07460 PF03437 BtpA family APT55_RS07465 PF02517 CAAX protease self-immunity APT55_RS07470 PF14250 APT55_RS07470 APT55_RS07475 PF13085 2Fe-2S iron-sulfur cluster binding domain APT55_RS07475 PF13183 4Fe-4S dicluster domain APT55_RS07480 PF00504 Chlorophyll A-B binding protein APT55_RS07485 PF07444 APT55_RS07485 APT55_RS07490 PF06596 Photosystem II reaction centre X protein (PsbX) APT55_RS07495 PF02325 APT55_RS07495 APT55_RS07500 PF05685 Putative restriction endonuclease APT55_RS07505 PF01841 Transglutaminase-like superfamily APT55_RS07510 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APT55_RS07510 PF02785 Biotin carboxylase C-terminal domain APT55_RS07510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT55_RS07515 PF09601 APT55_RS07515 APT55_RS07520 PF05685 Putative restriction endonuclease APT55_RS07525 PF00580 UvrD/REP helicase N-terminal domain APT55_RS07525 PF13361 UvrD-like helicase C-terminal domain APT55_RS07540 PF08854 Domain of unknown function (DUF1824) APT55_RS07550 PF04982 APT55_RS07550 APT55_RS07560 PF04982 APT55_RS07560 APT55_RS07565 PF00248 Aldo/keto reductase family APT55_RS07565 PF13534 4Fe-4S dicluster domain APT55_RS07570 PF02577 Bifunctional nuclease APT55_RS07575 PF00677 Lumazine binding domain APT55_RS07580 PF00072 Response regulator receiver domain APT55_RS07580 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07580 PF00989 PAS fold APT55_RS07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07585 PF01339 CheB methylesterase APT55_RS07590 PF01739 CheR methyltransferase, SAM binding domain APT55_RS07590 PF03705 CheR methyltransferase, all-alpha domain APT55_RS07600 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07600 PF00989 PAS fold APT55_RS07600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07600 PF08447 PAS fold APT55_RS07600 PF08448 PAS fold APT55_RS07600 PF13426 PAS domain APT55_RS07605 PF00072 Response regulator receiver domain APT55_RS07605 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07615 PF01494 FAD binding domain APT55_RS07620 PF00731 AIR carboxylase APT55_RS07625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT55_RS07630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT55_RS07635 PF03109 APT55_RS07635 APT55_RS07640 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07640 PF01590 GAF domain APT55_RS07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS07640 PF13492 GAF domain APT55_RS07645 PF01935 Domain of unknown function DUF87 APT55_RS07655 PF13483 Beta-lactamase superfamily domain APT55_RS07670 PF11317 APT55_RS07670 APT55_RS07675 PF11285 APT55_RS07675 APT55_RS07680 PF02660 APT55_RS07680 APT55_RS07685 PF14325 APT55_RS07685 APT55_RS07690 PF07007 Protein of unknown function (DUF1311) APT55_RS07695 PF01081 KDPG and KHG aldolase APT55_RS07700 PF05239 PRC-barrel domain APT55_RS07700 PF09557 APT55_RS07700 APT55_RS07705 PF07823 Cyclic phosphodiesterase-like protein APT55_RS07710 PF00330 Aconitase family (aconitate hydratase) APT55_RS07710 PF06434 Aconitate hydratase 2 N-terminus APT55_RS07710 PF11791 Aconitate B N-terminal domain APT55_RS07715 PF00875 DNA photolyase APT55_RS07715 PF03441 FAD binding domain of DNA photolyase APT55_RS07725 PF01545 Cation efflux family APT55_RS07725 PF16916 APT55_RS07725 APT55_RS07730 PF00400 WD domain, G-beta repeat APT55_RS07730 PF07676 WD40-like Beta Propeller Repeat APT55_RS07730 PF12894 Anaphase-promoting complex subunit 4 WD40 domain APT55_RS07730 PF13676 TIR domain APT55_RS07740 PF01850 PIN domain APT55_RS07750 PF01546 Peptidase family M20/M25/M40 APT55_RS07750 PF07687 Peptidase dimerisation domain APT55_RS07755 PF05050 Methyltransferase FkbM domain APT55_RS07760 PF02779 Transketolase, pyrimidine binding domain APT55_RS07760 PF02780 Transketolase, C-terminal domain APT55_RS07760 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APT55_RS07770 PF01850 PIN domain APT55_RS07775 PF00471 Ribosomal protein L33 APT55_RS07780 PF01084 Ribosomal protein S18 APT55_RS07785 PF00773 RNB domain APT55_RS07800 PF05685 Putative restriction endonuclease APT55_RS07805 PF01545 Cation efflux family APT55_RS07810 PF02560 Cyanate lyase C-terminal domain APT55_RS07815 PF11264 APT55_RS07815 APT55_RS07825 PF00092 von Willebrand factor type A domain APT55_RS07830 PF01758 Sodium Bile acid symporter family APT55_RS07835 PF00067 Cytochrome P450 APT55_RS07840 PF00871 Acetokinase family APT55_RS07845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT55_RS07845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT55_RS07850 PF00395 S-layer homology domain APT55_RS07850 PF02638 APT55_RS07850 APT55_RS07855 PF09376 NurA domain APT55_RS07860 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS07865 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS07870 PF02367 Uncharacterised P-loop hydrolase UPF0079 APT55_RS07875 PF01933 Uncharacterised protein family UPF0052 APT55_RS07880 PF01252 APT55_RS07880 APT55_RS07885 PF02632 BioY family APT55_RS07890 PF04055 Radical SAM superfamily APT55_RS07890 PF06968 Biotin and Thiamin Synthesis associated domain APT55_RS07895 PF00515 Tetratricopeptide repeat APT55_RS07895 PF13181 Tetratricopeptide repeat APT55_RS07900 PF00723 Glycosyl hydrolases family 15 APT55_RS07905 PF01979 Amidohydrolase family APT55_RS07910 PF01292 Prokaryotic cytochrome b561 APT55_RS07915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT55_RS07915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT55_RS07920 PF02571 APT55_RS07920 APT55_RS07925 PF00202 Aminotransferase class-III APT55_RS07935 PF13437 HlyD family secretion protein APT55_RS07935 PF13533 Biotin-lipoyl like APT55_RS07940 PF02687 APT55_RS07940 APT55_RS07940 PF12704 MacB-like periplasmic core domain APT55_RS07945 PF01987 Mitochondrial biogenesis AIM24 APT55_RS07950 PF00484 Carbonic anhydrase APT55_RS07955 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS07960 PF00005 ABC transporter APT55_RS07960 PF00664 ABC transporter transmembrane region APT55_RS07965 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS07970 PF09939 APT55_RS07970 APT55_RS07990 PF05270 Alpha-L-arabinofuranosidase B (ABFB) APT55_RS07995 PF05270 Alpha-L-arabinofuranosidase B (ABFB) APT55_RS08000 PF12833 Helix-turn-helix domain APT55_RS08005 PF12833 Helix-turn-helix domain APT55_RS08010 PF00072 Response regulator receiver domain APT55_RS08010 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08010 PF01590 GAF domain APT55_RS08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08010 PF08447 PAS fold APT55_RS08010 PF13188 PAS domain APT55_RS08015 PF12263 APT55_RS08015 APT55_RS08025 PF05729 NACHT domain APT55_RS08030 PF09957 APT55_RS08030 APT55_RS08035 PF01850 PIN domain APT55_RS08040 PF14681 Uracil phosphoribosyltransferase APT55_RS08050 PF02325 APT55_RS08050 APT55_RS08055 PF00875 DNA photolyase APT55_RS08055 PF03441 FAD binding domain of DNA photolyase APT55_RS08080 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain APT55_RS08080 PF00364 Biotin-requiring enzyme APT55_RS08080 PF02626 Allophanate hydrolase subunit 2 APT55_RS08080 PF02682 Allophanate hydrolase subunit 1 APT55_RS08080 PF02785 Biotin carboxylase C-terminal domain APT55_RS08080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT55_RS08085 PF09347 Domain of unknown function (DUF1989) APT55_RS08090 PF09347 Domain of unknown function (DUF1989) APT55_RS08095 PF09084 NMT1/THI5 like APT55_RS08100 PF00005 ABC transporter APT55_RS08105 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS08110 PF00120 Glutamine synthetase, catalytic domain APT55_RS08115 PF00072 Response regulator receiver domain APT55_RS08115 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08115 PF01590 GAF domain APT55_RS08115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08115 PF08448 PAS fold APT55_RS08115 PF13188 PAS domain APT55_RS08120 PF00072 Response regulator receiver domain APT55_RS08120 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08120 PF08448 PAS fold APT55_RS08125 PF07466 APT55_RS08125 APT55_RS08130 PF01746 tRNA (Guanine-1)-methyltransferase APT55_RS08135 PF03575 Peptidase family S51 APT55_RS08140 PF02875 Mur ligase family, glutamate ligase domain APT55_RS08140 PF08245 Mur ligase middle domain APT55_RS08140 PF08443 RimK-like ATP-grasp domain APT55_RS08145 PF09366 APT55_RS08145 APT55_RS08150 PF13460 NADH(P)-binding APT55_RS08155 PF00106 short chain dehydrogenase APT55_RS08160 PF02583 Metal-sensitive transcriptional repressor APT55_RS08165 PF13180 PDZ domain APT55_RS08165 PF13365 Trypsin-like peptidase domain APT55_RS08175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT55_RS08175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT55_RS08185 PF00581 Rhodanese-like domain APT55_RS08185 PF00899 ThiF family APT55_RS08190 PF14464 Prokaryotic homologs of the JAB domain APT55_RS08195 PF01425 Amidase APT55_RS08200 PF07690 Major Facilitator Superfamily APT55_RS08210 PF00805 Pentapeptide repeats (8 copies) APT55_RS08215 PF03816 Cell envelope-related transcriptional attenuator domain APT55_RS08215 PF13399 LytR cell envelope-related transcriptional attenuator APT55_RS08220 PF00483 Nucleotidyl transferase APT55_RS08225 PF13975 APT55_RS08225 APT55_RS08230 PF00117 Glutamine amidotransferase class-I APT55_RS08230 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APT55_RS08235 PF01740 STAS domain APT55_RS08240 PF00636 Ribonuclease III domain APT55_RS08245 PF00588 SpoU rRNA Methylase family APT55_RS08245 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT55_RS08250 PF08846 APT55_RS08250 APT55_RS08255 PF00561 alpha/beta hydrolase fold APT55_RS08260 PF11210 APT55_RS08260 APT55_RS08265 PF03653 APT55_RS08265 APT55_RS08270 PF10929 APT55_RS08270 APT55_RS08275 PF11282 APT55_RS08275 APT55_RS08295 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS08300 PF00156 Phosphoribosyl transferase domain APT55_RS08305 PF04055 Radical SAM superfamily APT55_RS08305 PF06463 Molybdenum Cofactor Synthesis C APT55_RS08305 PF13353 4Fe-4S single cluster domain APT55_RS08310 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS08310 PF05226 APT55_RS08310 APT55_RS08315 PF04226 APT55_RS08315 APT55_RS08325 PF00011 Hsp20/alpha crystallin family APT55_RS08330 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT55_RS08335 PF08486 APT55_RS08335 APT55_RS08340 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT55_RS08345 PF10518 TAT (twin-arginine translocation) pathway signal sequence APT55_RS08345 PF13379 NMT1-like family APT55_RS08350 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS08355 PF00005 ABC transporter APT55_RS08355 PF13379 NMT1-like family APT55_RS08360 PF00005 ABC transporter APT55_RS08370 PF05982 APT55_RS08370 APT55_RS08380 PF00999 Sodium/hydrogen exchanger family APT55_RS08385 PF01609 Transposase DDE domain APT55_RS08390 PF13529 Peptidase_C39 like family APT55_RS08395 PF02274 Amidinotransferase APT55_RS08395 PF04455 LOR/SDH bifunctional enzyme conserved region APT55_RS08400 PF01546 Peptidase family M20/M25/M40 APT55_RS08400 PF07687 Peptidase dimerisation domain APT55_RS08405 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT55_RS08405 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT55_RS08410 PF01420 Type I restriction modification DNA specificity domain APT55_RS08415 PF01850 PIN domain APT55_RS08425 PF02384 N-6 DNA Methylase APT55_RS08425 PF12161 HsdM N-terminal domain APT55_RS08430 PF00271 Helicase conserved C-terminal domain APT55_RS08430 PF04851 Type III restriction enzyme, res subunit APT55_RS08430 PF08463 APT55_RS08430 APT55_RS08430 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APT55_RS08435 PF14279 APT55_RS08435 APT55_RS08445 PF00581 Rhodanese-like domain APT55_RS08450 PF00176 SNF2 family N-terminal domain APT55_RS08450 PF00271 Helicase conserved C-terminal domain APT55_RS08450 PF08455 APT55_RS08450 APT55_RS08455 PF00155 Aminotransferase class I and II APT55_RS08460 PF05729 NACHT domain APT55_RS08460 PF13646 HEAT repeats APT55_RS08465 PF03683 APT55_RS08465 APT55_RS08470 PF11848 APT55_RS08470 APT55_RS08480 PF13676 TIR domain APT55_RS08485 PF03683 APT55_RS08485 APT55_RS08490 PF11848 APT55_RS08490 APT55_RS08495 PF03683 APT55_RS08495 APT55_RS08500 PF05016 Plasmid stabilisation system protein APT55_RS08505 PF10142 PhoPQ-activated pathogenicity-related protein APT55_RS08505 PF12146 Putative lysophospholipase APT55_RS08510 PF14015 APT55_RS08510 APT55_RS08515 PF08853 Domain of unknown function (DUF1823) APT55_RS08525 PF00155 Aminotransferase class I and II APT55_RS08540 PF04536 TLP18 APT55_RS08545 PF06103 APT55_RS08545 APT55_RS08550 PF12732 APT55_RS08550 APT55_RS08560 PF00069 Protein kinase domain APT55_RS08560 PF00805 Pentapeptide repeats (8 copies) APT55_RS08565 PF01588 Putative tRNA binding domain APT55_RS08565 PF03147 Ferredoxin-fold anticodon binding domain APT55_RS08565 PF03483 B3/4 domain APT55_RS08565 PF03484 tRNA synthetase B5 domain APT55_RS08570 PF03795 YCII-related domain APT55_RS08575 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS08575 PF05226 APT55_RS08575 APT55_RS08580 PF06051 APT55_RS08580 APT55_RS08585 PF12770 APT55_RS08585 APT55_RS08585 PF13181 Tetratricopeptide repeat APT55_RS08585 PF13424 Tetratricopeptide repeat APT55_RS08590 PF00231 ATP synthase APT55_RS08595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT55_RS08595 PF00306 ATP synthase alpha/beta chain, C terminal domain APT55_RS08595 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT55_RS08600 PF00213 ATP synthase delta (OSCP) subunit APT55_RS08605 PF00430 ATP synthase B/B' CF(0) APT55_RS08610 PF00430 ATP synthase B/B' CF(0) APT55_RS08615 PF00137 ATP synthase subunit C APT55_RS08620 PF00119 ATP synthase A chain APT55_RS08625 PF12966 APT55_RS08625 APT55_RS08630 PF13847 Methyltransferase domain APT55_RS08640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT55_RS08645 PF04539 Sigma-70 region 3 APT55_RS08645 PF04542 Sigma-70 region 2 APT55_RS08645 PF08281 Sigma-70, region 4 APT55_RS08670 PF00012 Hsp70 protein APT55_RS08675 PF00011 Hsp20/alpha crystallin family APT55_RS08680 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS08685 PF11152 APT55_RS08685 APT55_RS08690 PF00266 Aminotransferase class-V APT55_RS08705 PF05685 Putative restriction endonuclease APT55_RS08715 PF13676 TIR domain APT55_RS08720 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APT55_RS08725 PF00293 NUDIX domain APT55_RS08730 PF00875 DNA photolyase APT55_RS08730 PF03441 FAD binding domain of DNA photolyase APT55_RS08735 PF00581 Rhodanese-like domain APT55_RS08740 PF08592 APT55_RS08740 APT55_RS08745 PF00082 Subtilase family APT55_RS08760 PF01676 Metalloenzyme superfamily APT55_RS08760 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APT55_RS08765 PF00005 ABC transporter APT55_RS08765 PF12848 ABC transporter APT55_RS08770 PF06108 Protein of unknown function (DUF952) APT55_RS08780 PF13581 Histidine kinase-like ATPase domain APT55_RS08785 PF00226 DnaJ domain APT55_RS08785 PF07719 Tetratricopeptide repeat APT55_RS08785 PF13432 Tetratricopeptide repeat APT55_RS08790 PF00574 Clp protease APT55_RS08795 PF00574 Clp protease APT55_RS08800 PF00574 Clp protease APT55_RS08805 PF02224 Cytidylate kinase APT55_RS08805 PF02569 Pantoate-beta-alanine ligase APT55_RS08815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS08820 PF05496 Holliday junction DNA helicase ruvB N-terminus APT55_RS08820 PF12002 MgsA AAA+ ATPase C terminal APT55_RS08820 PF16193 APT55_RS08820 APT55_RS08830 PF00027 Cyclic nucleotide-binding domain APT55_RS08830 PF00916 APT55_RS08830 APT55_RS08830 PF01740 STAS domain APT55_RS08845 PF03982 APT55_RS08845 APT55_RS08850 PF08869 XisI protein APT55_RS08855 PF05729 NACHT domain APT55_RS08865 PF00027 Cyclic nucleotide-binding domain APT55_RS08865 PF00158 Sigma-54 interaction domain APT55_RS08865 PF12801 APT55_RS08865 APT55_RS08875 PF12770 APT55_RS08875 APT55_RS08875 PF13432 Tetratricopeptide repeat APT55_RS08880 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT55_RS08880 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT55_RS08885 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APT55_RS08885 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal APT55_RS08885 PF13288 DXP reductoisomerase C-terminal domain APT55_RS08895 PF01183 Glycosyl hydrolases family 25 APT55_RS08895 PF01471 Putative peptidoglycan binding domain APT55_RS08900 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS08905 PF02653 APT55_RS08905 APT55_RS08910 PF00005 ABC transporter APT55_RS08915 PF13407 Periplasmic binding protein domain APT55_RS08920 PF00395 S-layer homology domain APT55_RS08920 PF04966 Carbohydrate-selective porin, OprB family APT55_RS08930 PF01078 Magnesium chelatase, subunit ChlI APT55_RS08930 PF13519 von Willebrand factor type A domain APT55_RS08935 PF01471 Putative peptidoglycan binding domain APT55_RS08940 PF03747 ADP-ribosylglycohydrolase APT55_RS08945 PF02535 APT55_RS08945 APT55_RS08950 PF00535 Glycosyl transferase family 2 APT55_RS08955 PF04240 APT55_RS08955 APT55_RS08960 PF06799 APT55_RS08960 APT55_RS08965 PF00472 RF-1 domain APT55_RS08965 PF03462 PCRF domain APT55_RS08970 PF01571 Aminomethyltransferase folate-binding domain APT55_RS08970 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT55_RS08975 PF00574 Clp protease APT55_RS08985 PF03190 Protein of unknown function, DUF255 APT55_RS08990 PF06745 KaiC APT55_RS08995 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS08995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS09000 PF01738 Dienelactone hydrolase family APT55_RS09010 PF14279 APT55_RS09010 APT55_RS09025 PF06967 APT55_RS09025 APT55_RS09050 PF00717 Peptidase S24-like APT55_RS09050 PF01726 LexA DNA binding domain APT55_RS09060 PF00665 Integrase core domain APT55_RS09060 PF09299 Mu transposase, C-terminal APT55_RS09060 PF13384 Homeodomain-like domain APT55_RS09065 PF05621 APT55_RS09065 APT55_RS09070 PF06527 APT55_RS09070 APT55_RS09075 PF00145 C-5 cytosine-specific DNA methylase APT55_RS09080 PF13087 AAA domain APT55_RS09080 PF13604 AAA domain APT55_RS09095 PF00515 Tetratricopeptide repeat APT55_RS09095 PF12770 APT55_RS09095 APT55_RS09095 PF13414 TPR repeat APT55_RS09105 PF12705 PD-(D/E)XK nuclease superfamily APT55_RS09130 PF02570 Precorrin-8X methylmutase APT55_RS09135 PF07969 Amidohydrolase family APT55_RS09145 PF01176 Translation initiation factor 1A / IF-1 APT55_RS09150 PF00444 Ribosomal protein L36 APT55_RS09155 PF00416 Ribosomal protein S13/S18 APT55_RS09160 PF00411 Ribosomal protein S11 APT55_RS09165 PF01000 RNA polymerase Rpb3/RpoA insert domain APT55_RS09165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APT55_RS09165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APT55_RS09170 PF01196 Ribosomal protein L17 APT55_RS09175 PF01416 tRNA pseudouridine synthase APT55_RS09180 PF00572 Ribosomal protein L13 APT55_RS09185 PF00380 Ribosomal protein S9/S16 APT55_RS09190 PF01197 Ribosomal protein L31 APT55_RS09195 PF00472 RF-1 domain APT55_RS09195 PF03462 PCRF domain APT55_RS09210 PF05685 Putative restriction endonuclease APT55_RS09230 PF13476 AAA domain APT55_RS09235 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APT55_RS09235 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APT55_RS09240 PF00106 short chain dehydrogenase APT55_RS09250 PF00582 Universal stress protein family APT55_RS09250 PF00999 Sodium/hydrogen exchanger family APT55_RS09255 PF00072 Response regulator receiver domain APT55_RS09265 PF01541 GIY-YIG catalytic domain APT55_RS09265 PF02151 UvrB/uvrC motif APT55_RS09265 PF08459 UvrC Helix-hairpin-helix N-terminal APT55_RS09265 PF12826 Helix-hairpin-helix motif APT55_RS09270 PF02811 PHP domain APT55_RS09275 PF07568 APT55_RS09275 APT55_RS09275 PF13581 Histidine kinase-like ATPase domain APT55_RS09280 PF00072 Response regulator receiver domain APT55_RS09280 PF00196 Bacterial regulatory proteins, luxR family APT55_RS09285 PF00535 Glycosyl transferase family 2 APT55_RS09300 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS09300 PF00672 HAMP domain APT55_RS09300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS09300 PF05228 APT55_RS09300 APT55_RS09315 PF05239 PRC-barrel domain APT55_RS09325 PF01765 Ribosome recycling factor APT55_RS09330 PF00696 Amino acid kinase family APT55_RS09335 PF00586 AIR synthase related protein, N-terminal domain APT55_RS09335 PF02769 AIR synthase related protein, C-terminal domain APT55_RS09340 PF00156 Phosphoribosyl transferase domain APT55_RS09340 PF13537 Glutamine amidotransferase domain APT55_RS09355 PF00232 Glycosyl hydrolase family 1 APT55_RS09365 PF02562 PhoH-like protein APT55_RS09370 PF03129 Anticodon binding domain APT55_RS09370 PF13393 Histidyl-tRNA synthetase APT55_RS09375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT55_RS09375 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS09380 PF00155 Aminotransferase class I and II APT55_RS09385 PF00216 Bacterial DNA-binding protein APT55_RS09390 PF05685 Putative restriction endonuclease APT55_RS09390 PF11839 APT55_RS09390 APT55_RS09400 PF01521 Iron-sulphur cluster biosynthesis APT55_RS09420 PF01794 APT55_RS09420 APT55_RS09420 PF13386 APT55_RS09420 APT55_RS09430 PF00890 FAD binding domain APT55_RS09430 PF02910 Fumarate reductase flavoprotein C-term APT55_RS09435 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS09435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS09435 PF05231 APT55_RS09435 APT55_RS09440 PF10999 APT55_RS09440 APT55_RS09450 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) APT55_RS09455 PF00890 FAD binding domain APT55_RS09455 PF02910 Fumarate reductase flavoprotein C-term APT55_RS09460 PF11103 APT55_RS09460 APT55_RS09460 PF14261 APT55_RS09460 APT55_RS09465 PF07080 Protein of unknown function (DUF1348) APT55_RS09475 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS09480 PF04965 Gene 25-like lysozyme APT55_RS09485 PF04865 APT55_RS09485 APT55_RS09490 PF09684 APT55_RS09490 APT55_RS09500 PF00672 HAMP domain APT55_RS09500 PF11845 APT55_RS09500 APT55_RS09505 PF00400 WD domain, G-beta repeat APT55_RS09515 PF07862 APT55_RS09515 APT55_RS09520 PF12849 PBP superfamily domain APT55_RS09525 PF07538 APT55_RS09525 APT55_RS09530 PF00515 Tetratricopeptide repeat APT55_RS09530 PF13181 Tetratricopeptide repeat APT55_RS09530 PF13432 Tetratricopeptide repeat APT55_RS09530 PF14559 Tetratricopeptide repeat APT55_RS09535 PF00805 Pentapeptide repeats (8 copies) APT55_RS09535 PF13599 Pentapeptide repeats (9 copies) APT55_RS09540 PF02163 Peptidase family M50 APT55_RS09540 PF13180 PDZ domain APT55_RS09545 PF00633 Helix-hairpin-helix motif APT55_RS09545 PF00730 HhH-GPD superfamily base excision DNA repair protein APT55_RS09545 PF10576 Iron-sulfur binding domain of endonuclease III APT55_RS09550 PF00253 Ribosomal protein S14p/S29e APT55_RS09560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APT55_RS09565 PF05685 Putative restriction endonuclease APT55_RS09570 PF12204 Domain of unknown function (DUF3598) APT55_RS09575 PF02687 APT55_RS09575 APT55_RS09580 PF01327 Polypeptide deformylase APT55_RS09590 PF00498 FHA domain APT55_RS09590 PF13367 APT55_RS09590 APT55_RS09610 PF14518 Iron-containing redox enzyme APT55_RS09615 PF00501 AMP-binding enzyme APT55_RS09615 PF00550 Phosphopantetheine attachment site APT55_RS09615 PF00668 Condensation domain APT55_RS09615 PF00975 Thioesterase domain APT55_RS09615 PF13193 AMP-binding enzyme C-terminal domain APT55_RS09615 PF13745 HxxPF-repeated domain APT55_RS09620 PF00501 AMP-binding enzyme APT55_RS09620 PF00550 Phosphopantetheine attachment site APT55_RS09620 PF00668 Condensation domain APT55_RS09620 PF13193 AMP-binding enzyme C-terminal domain APT55_RS09620 PF13745 HxxPF-repeated domain APT55_RS09625 PF00501 AMP-binding enzyme APT55_RS09625 PF00550 Phosphopantetheine attachment site APT55_RS09625 PF13193 AMP-binding enzyme C-terminal domain APT55_RS09630 PF00575 S1 RNA binding domain APT55_RS09630 PF09371 Tex-like protein N-terminal domain APT55_RS09630 PF12836 Helix-hairpin-helix motif APT55_RS09630 PF16921 APT55_RS09630 APT55_RS09640 PF01934 Protein of unknown function DUF86 APT55_RS09645 PF01909 Nucleotidyltransferase domain APT55_RS09655 PF01812 5-formyltetrahydrofolate cyclo-ligase family APT55_RS09665 PF00485 Phosphoribulokinase / Uridine kinase family APT55_RS09670 PF02686 Glu-tRNAGln amidotransferase C subunit APT55_RS09675 PF13432 Tetratricopeptide repeat APT55_RS09685 PF00712 DNA polymerase III beta subunit, N-terminal domain APT55_RS09685 PF02767 DNA polymerase III beta subunit, central domain APT55_RS09685 PF02768 DNA polymerase III beta subunit, C-terminal domain APT55_RS09695 PF02687 APT55_RS09695 APT55_RS09695 PF12704 MacB-like periplasmic core domain APT55_RS09700 PF00005 ABC transporter APT55_RS09705 PF13649 Methyltransferase domain APT55_RS09710 PF00589 Phage integrase family APT55_RS09715 PF00762 Ferrochelatase APT55_RS09720 PF00072 Response regulator receiver domain APT55_RS09720 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS09725 PF02481 DNA recombination-mediator protein A APT55_RS09730 PF10063 APT55_RS09730 APT55_RS09735 PF05120 APT55_RS09735 APT55_RS09740 PF06386 APT55_RS09740 APT55_RS09745 PF00741 APT55_RS09745 APT55_RS09745 PF05121 APT55_RS09745 APT55_RS09750 PF00741 APT55_RS09750 APT55_RS09755 PF07728 AAA domain (dynein-related subfamily) APT55_RS09765 PF00741 APT55_RS09765 APT55_RS09770 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS09775 PF02374 Anion-transporting ATPase APT55_RS09780 PF01242 6-pyruvoyl tetrahydropterin synthase APT55_RS09785 PF11104 Type IV pilus assembly protein PilM; APT55_RS09790 PF05137 APT55_RS09790 APT55_RS09800 PF00263 APT55_RS09800 APT55_RS09800 PF03958 Bacterial type II/III secretion system short domain APT55_RS09800 PF11741 AMIN domain APT55_RS09815 PF00027 Cyclic nucleotide-binding domain APT55_RS09820 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS09825 PF08450 SMP-30/Gluconolaconase/LRE-like region APT55_RS09830 PF03631 APT55_RS09830 APT55_RS09835 PF01841 Transglutaminase-like superfamily APT55_RS09835 PF08379 APT55_RS09835 APT55_RS09840 PF02033 Ribosome-binding factor A APT55_RS09845 PF05421 APT55_RS09845 APT55_RS09850 PF01548 APT55_RS09850 APT55_RS09875 PF13560 Helix-turn-helix domain APT55_RS09900 PF13481 AAA domain APT55_RS09955 PF02086 D12 class N6 adenine-specific DNA methyltransferase APT55_RS09960 PF01061 APT55_RS09960 APT55_RS09970 PF11371 APT55_RS09970 APT55_RS09975 PF00072 Response regulator receiver domain APT55_RS09975 PF00486 Transcriptional regulatory protein, C terminal APT55_RS09975 PF01627 Hpt domain APT55_RS09980 PF00072 Response regulator receiver domain APT55_RS09980 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS09980 PF08447 PAS fold APT55_RS09980 PF13426 PAS domain APT55_RS09985 PF13546 APT55_RS09985 APT55_RS09990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10000 PF00027 Cyclic nucleotide-binding domain APT55_RS10000 PF00916 APT55_RS10000 APT55_RS10000 PF01740 STAS domain APT55_RS10005 PF01584 CheW-like domain APT55_RS10010 PF01739 CheR methyltransferase, SAM binding domain APT55_RS10010 PF13181 Tetratricopeptide repeat APT55_RS10015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS10015 PF00672 HAMP domain APT55_RS10020 PF01584 CheW-like domain APT55_RS10025 PF00072 Response regulator receiver domain APT55_RS10025 PF01584 CheW-like domain APT55_RS10025 PF01627 Hpt domain APT55_RS10025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10030 PF00072 Response regulator receiver domain APT55_RS10030 PF01339 CheB methylesterase APT55_RS10035 PF00072 Response regulator receiver domain APT55_RS10035 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS10040 PF01411 tRNA synthetases class II (A) APT55_RS10040 PF02272 DHHA1 domain APT55_RS10040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT55_RS10045 PF06041 Bacterial protein of unknown function (DUF924) APT55_RS10060 PF02525 Flavodoxin-like fold APT55_RS10065 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10065 PF01590 GAF domain APT55_RS10065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10065 PF08447 PAS fold APT55_RS10065 PF08448 PAS fold APT55_RS10070 PF00883 Cytosol aminopeptidase family, catalytic domain APT55_RS10070 PF02789 Cytosol aminopeptidase family, N-terminal domain APT55_RS10075 PF01464 Transglycosylase SLT domain APT55_RS10075 PF13174 Tetratricopeptide repeat APT55_RS10075 PF13432 Tetratricopeptide repeat APT55_RS10080 PF07731 Multicopper oxidase APT55_RS10080 PF07732 Multicopper oxidase APT55_RS10085 PF12836 Helix-hairpin-helix motif APT55_RS10090 PF03239 APT55_RS10090 APT55_RS10095 PF01734 Patatin-like phospholipase APT55_RS10100 PF01055 Glycosyl hydrolases family 31 APT55_RS10100 PF13802 Galactose mutarotase-like APT55_RS10100 PF16338 APT55_RS10100 APT55_RS10100 PF17137 APT55_RS10100 APT55_RS10105 PF09150 Orange carotenoid protein, N-terminal APT55_RS10110 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10110 PF14361 APT55_RS10110 APT55_RS10115 PF01926 50S ribosome-binding GTPase APT55_RS10120 PF00582 Universal stress protein family APT55_RS10125 PF00162 Phosphoglycerate kinase APT55_RS10130 PF00588 SpoU rRNA Methylase family APT55_RS10130 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT55_RS10135 PF05685 Putative restriction endonuclease APT55_RS10150 PF01926 50S ribosome-binding GTPase APT55_RS10150 PF05128 APT55_RS10150 APT55_RS10155 PF06078 Bacterial protein of unknown function (DUF937) APT55_RS10160 PF00076 RNA recognition motif APT55_RS10165 PF12849 PBP superfamily domain APT55_RS10170 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS10175 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS10180 PF00005 ABC transporter APT55_RS10185 PF02374 Anion-transporting ATPase APT55_RS10190 PF01926 50S ribosome-binding GTPase APT55_RS10190 PF06071 Protein of unknown function (DUF933) APT55_RS10200 PF01276 Orn/Lys/Arg decarboxylase, major domain APT55_RS10200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain APT55_RS10205 PF13847 Methyltransferase domain APT55_RS10210 PF01148 Cytidylyltransferase family APT55_RS10215 PF11209 APT55_RS10215 APT55_RS10220 PF07498 Rho termination factor, N-terminal domain APT55_RS10220 PF16258 APT55_RS10220 APT55_RS10230 PF10184 APT55_RS10230 APT55_RS10235 PF14230 APT55_RS10235 APT55_RS10240 PF13449 Esterase-like activity of phytase APT55_RS10245 PF00072 Response regulator receiver domain APT55_RS10245 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10245 PF01590 GAF domain APT55_RS10245 PF01627 Hpt domain APT55_RS10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10245 PF13185 GAF domain APT55_RS10260 PF00427 Phycobilisome Linker polypeptide APT55_RS10260 PF00502 Phycobilisome protein APT55_RS10265 PF01964 ThiC family APT55_RS10270 PF00072 Response regulator receiver domain APT55_RS10275 PF00072 Response regulator receiver domain APT55_RS10275 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10275 PF00989 PAS fold APT55_RS10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10275 PF08447 PAS fold APT55_RS10275 PF13426 PAS domain APT55_RS10280 PF00072 Response regulator receiver domain APT55_RS10280 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10280 PF08448 PAS fold APT55_RS10290 PF00072 Response regulator receiver domain APT55_RS10300 PF01584 CheW-like domain APT55_RS10300 PF01627 Hpt domain APT55_RS10300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10300 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS10305 PF01584 CheW-like domain APT55_RS10310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS10315 PF00072 Response regulator receiver domain APT55_RS10315 PF01339 CheB methylesterase APT55_RS10320 PF01739 CheR methyltransferase, SAM binding domain APT55_RS10320 PF03705 CheR methyltransferase, all-alpha domain APT55_RS10325 PF00072 Response regulator receiver domain APT55_RS10325 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10325 PF08447 PAS fold APT55_RS10330 PF13180 PDZ domain APT55_RS10330 PF13365 Trypsin-like peptidase domain APT55_RS10335 PF13437 HlyD family secretion protein APT55_RS10335 PF13533 Biotin-lipoyl like APT55_RS10340 PF02687 APT55_RS10340 APT55_RS10345 PF00005 ABC transporter APT55_RS10350 PF01628 HrcA protein C terminal domain APT55_RS10360 PF01850 PIN domain APT55_RS10365 PF00152 tRNA synthetases class II (D, K and N) APT55_RS10365 PF01336 OB-fold nucleic acid binding domain APT55_RS10380 PF00005 ABC transporter APT55_RS10380 PF08402 TOBE domain APT55_RS10390 PF12965 APT55_RS10390 APT55_RS10405 PF09721 APT55_RS10405 APT55_RS10410 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APT55_RS10410 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain APT55_RS10415 PF00732 GMC oxidoreductase APT55_RS10415 PF00996 GDP dissociation inhibitor APT55_RS10415 PF05199 GMC oxidoreductase APT55_RS10420 PF00510 Cytochrome c oxidase subunit III APT55_RS10425 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT55_RS10430 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT55_RS10430 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APT55_RS10435 PF09990 APT55_RS10435 APT55_RS10440 PF09990 APT55_RS10440 APT55_RS10450 PF00805 Pentapeptide repeats (8 copies) APT55_RS10455 PF03808 APT55_RS10455 APT55_RS10460 PF13181 Tetratricopeptide repeat APT55_RS10470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT55_RS10470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT55_RS10470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT55_RS10470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT55_RS10475 PF00343 Carbohydrate phosphorylase APT55_RS10480 PF00300 Histidine phosphatase superfamily (branch 1) APT55_RS10485 PF01433 Peptidase family M1 APT55_RS10485 PF13646 HEAT repeats APT55_RS10495 PF00395 S-layer homology domain APT55_RS10495 PF04966 Carbohydrate-selective porin, OprB family APT55_RS10500 PF00128 Alpha amylase, catalytic domain APT55_RS10505 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS10505 PF02706 Chain length determinant protein APT55_RS10510 PF00395 S-layer homology domain APT55_RS10510 PF02563 Polysaccharide biosynthesis/export protein APT55_RS10510 PF10531 SLBB domain APT55_RS10515 PF00290 Tryptophan synthase alpha chain APT55_RS10520 PF11460 APT55_RS10520 APT55_RS10525 PF10716 APT55_RS10525 APT55_RS10540 PF01820 D-ala D-ala ligase N-terminus APT55_RS10540 PF07478 D-ala D-ala ligase C-terminus APT55_RS10545 PF00144 Beta-lactamase APT55_RS10545 PF11954 APT55_RS10545 APT55_RS10550 PF08241 Methyltransferase domain APT55_RS10555 PF13370 4Fe-4S single cluster domain APT55_RS10560 PF10184 APT55_RS10560 APT55_RS10565 PF02685 Glucokinase APT55_RS10570 PF01243 Pyridoxamine 5'-phosphate oxidase APT55_RS10570 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APT55_RS10580 PF00571 CBS domain APT55_RS10580 PF02163 Peptidase family M50 APT55_RS10585 PF00905 Penicillin binding protein transpeptidase domain APT55_RS10585 PF00912 Transglycosylase APT55_RS10585 PF06832 APT55_RS10585 APT55_RS10590 PF00207 Alpha-2-macroglobulin family APT55_RS10590 PF01835 MG2 domain APT55_RS10590 PF07703 Alpha-2-macroglobulin family N-terminal region APT55_RS10600 PF03435 Saccharopine dehydrogenase APT55_RS10605 PF00534 Glycosyl transferases group 1 APT55_RS10605 PF13439 Glycosyltransferase Family 4 APT55_RS10610 PF00534 Glycosyl transferases group 1 APT55_RS10615 PF05050 Methyltransferase FkbM domain APT55_RS10625 PF00534 Glycosyl transferases group 1 APT55_RS10625 PF13439 Glycosyltransferase Family 4 APT55_RS10635 PF00005 ABC transporter APT55_RS10635 PF14524 Wzt C-terminal domain APT55_RS10640 PF01061 APT55_RS10640 APT55_RS10645 PF14602 Hexapeptide repeat of succinyl-transferase APT55_RS10650 PF00534 Glycosyl transferases group 1 APT55_RS10655 PF05050 Methyltransferase FkbM domain APT55_RS10660 PF00534 Glycosyl transferases group 1 APT55_RS10665 PF00534 Glycosyl transferases group 1 APT55_RS10665 PF13439 Glycosyltransferase Family 4 APT55_RS10675 PF02706 Chain length determinant protein APT55_RS10675 PF13614 AAA domain APT55_RS10680 PF02563 Polysaccharide biosynthesis/export protein APT55_RS10680 PF10531 SLBB domain APT55_RS10685 PF00534 Glycosyl transferases group 1 APT55_RS10685 PF13439 Glycosyltransferase Family 4 APT55_RS10690 PF00550 Phosphopantetheine attachment site APT55_RS10690 PF00975 Thioesterase domain APT55_RS10705 PF09721 APT55_RS10705 APT55_RS10720 PF03734 L,D-transpeptidase catalytic domain APT55_RS10730 PF01134 Glucose inhibited division protein A APT55_RS10730 PF13932 GidA associated domain 3 APT55_RS10735 PF00717 Peptidase S24-like APT55_RS10735 PF01726 LexA DNA binding domain APT55_RS10740 PF01972 Serine dehydrogenase proteinase APT55_RS10750 PF05016 Plasmid stabilisation system protein APT55_RS10760 PF00075 RNase H APT55_RS10765 PF00535 Glycosyl transferase family 2 APT55_RS10770 PF00392 Bacterial regulatory proteins, gntR family APT55_RS10770 PF07729 FCD domain APT55_RS10775 PF07228 Stage II sporulation protein E (SpoIIE) APT55_RS10780 PF00448 SRP54-type protein, GTPase domain APT55_RS10780 PF02881 SRP54-type protein, helical bundle domain APT55_RS10785 PF01029 NusB family APT55_RS10790 PF00999 Sodium/hydrogen exchanger family APT55_RS10795 PF14903 APT55_RS10795 APT55_RS10800 PF00072 Response regulator receiver domain APT55_RS10800 PF00486 Transcriptional regulatory protein, C terminal APT55_RS10810 PF00462 Glutaredoxin APT55_RS10815 PF01722 BolA-like protein APT55_RS10820 PF00656 Caspase domain APT55_RS10830 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS10830 PF00672 HAMP domain APT55_RS10830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS10835 PF11150 APT55_RS10835 APT55_RS10840 PF07465 Photosystem I protein M (PsaM) APT55_RS10855 PF05258 APT55_RS10855 APT55_RS10865 PF04012 APT55_RS10865 APT55_RS10875 PF00350 Dynamin family APT55_RS10880 PF00350 Dynamin family APT55_RS10885 PF01936 NYN domain APT55_RS10890 PF01936 NYN domain APT55_RS10895 PF00657 GDSL-like Lipase/Acylhydrolase APT55_RS10900 PF01007 Inward rectifier potassium channel APT55_RS10905 PF03422 Carbohydrate binding module (family 6) APT55_RS10905 PF03663 Glycosyl hydrolase family 76 APT55_RS10910 PF00756 Putative esterase APT55_RS10915 PF09924 Uncharacterized conserved protein (DUF2156) APT55_RS10930 PF01523 Putative modulator of DNA gyrase APT55_RS10940 PF03486 HI0933-like protein APT55_RS10945 PF13430 APT55_RS10945 APT55_RS10980 PF01553 Acyltransferase APT55_RS10985 PF11850 APT55_RS10985 APT55_RS10990 PF02493 MORN repeat APT55_RS10995 PF01451 Low molecular weight phosphotyrosine protein phosphatase APT55_RS11000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT55_RS11000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT55_RS11005 PF00730 HhH-GPD superfamily base excision DNA repair protein APT55_RS11010 PF09992 Predicted periplasmic protein (DUF2233) APT55_RS11015 PF00072 Response regulator receiver domain APT55_RS11015 PF00196 Bacterial regulatory proteins, luxR family APT55_RS11020 PF03631 APT55_RS11020 APT55_RS11025 PF04226 APT55_RS11025 APT55_RS11035 PF00583 Acetyltransferase (GNAT) family APT55_RS11035 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase APT55_RS11040 PF13527 Acetyltransferase (GNAT) domain APT55_RS11040 PF13530 Sterol carrier protein domain APT55_RS11045 PF09376 NurA domain APT55_RS11050 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS11060 PF02609 Exonuclease VII small subunit APT55_RS11065 PF02601 APT55_RS11065 APT55_RS11065 PF13742 APT55_RS11065 APT55_RS11070 PF00154 recA bacterial DNA recombination protein APT55_RS11075 PF01494 FAD binding domain APT55_RS11080 PF00586 AIR synthase related protein, N-terminal domain APT55_RS11085 PF00072 Response regulator receiver domain APT55_RS11085 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS11085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS11085 PF08447 PAS fold APT55_RS11090 PF00072 Response regulator receiver domain APT55_RS11095 PF00360 Phytochrome region APT55_RS11095 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS11095 PF01590 GAF domain APT55_RS11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS11095 PF08446 PAS fold APT55_RS11100 PF00072 Response regulator receiver domain APT55_RS11110 PF09619 Type III secretion system lipoprotein chaperone (YscW) APT55_RS11110 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme APT55_RS11115 PF08450 SMP-30/Gluconolaconase/LRE-like region APT55_RS11120 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APT55_RS11125 PF14907 Uncharacterised nucleotidyltransferase APT55_RS11135 PF05050 Methyltransferase FkbM domain APT55_RS11140 PF00535 Glycosyl transferase family 2 APT55_RS11145 PF01370 NAD dependent epimerase/dehydratase family APT55_RS11150 PF00535 Glycosyl transferase family 2 APT55_RS11160 PF14907 Uncharacterised nucleotidyltransferase APT55_RS11165 PF00005 ABC transporter APT55_RS11170 PF00717 Peptidase S24-like APT55_RS11175 PF01471 Putative peptidoglycan binding domain APT55_RS11180 PF01741 Large-conductance mechanosensitive channel, MscL APT55_RS11185 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS11185 PF02151 UvrB/uvrC motif APT55_RS11185 PF02861 Clp amino terminal domain APT55_RS11185 PF07724 AAA domain (Cdc48 subfamily) APT55_RS11185 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS11190 PF00583 Acetyltransferase (GNAT) family APT55_RS11205 PF00583 Acetyltransferase (GNAT) family APT55_RS11215 PF10047 APT55_RS11215 APT55_RS11220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT55_RS11220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT55_RS11225 PF02457 DisA bacterial checkpoint controller nucleotide-binding APT55_RS11230 PF01255 Putative undecaprenyl diphosphate synthase APT55_RS11235 PF05685 Putative restriction endonuclease APT55_RS11245 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APT55_RS11245 PF01488 Shikimate / quinate 5-dehydrogenase APT55_RS11245 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APT55_RS11250 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APT55_RS11255 PF00989 PAS fold APT55_RS11255 PF01739 CheR methyltransferase, SAM binding domain APT55_RS11255 PF03705 CheR methyltransferase, all-alpha domain APT55_RS11260 PF01339 CheB methylesterase APT55_RS11265 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS11265 PF00989 PAS fold APT55_RS11265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS11275 PF02672 CP12 domain APT55_RS11280 PF13646 HEAT repeats APT55_RS11285 PF00583 Acetyltransferase (GNAT) family APT55_RS11300 PF05685 Putative restriction endonuclease APT55_RS11315 PF01593 Flavin containing amine oxidoreductase APT55_RS11320 PF00675 Insulinase (Peptidase family M16) APT55_RS11320 PF05193 Peptidase M16 inactive domain APT55_RS11325 PF03881 Fructosamine kinase APT55_RS11335 PF03572 Peptidase family S41 APT55_RS11335 PF13180 PDZ domain APT55_RS11345 PF00043 Glutathione S-transferase, C-terminal domain APT55_RS11345 PF02798 Glutathione S-transferase, N-terminal domain APT55_RS11350 PF02533 Photosystem II 4 kDa reaction centre component APT55_RS11355 PF01724 Domain of unknown function DUF29 APT55_RS11360 PF01702 Queuine tRNA-ribosyltransferase APT55_RS11365 PF00005 ABC transporter APT55_RS11370 PF00950 APT55_RS11370 APT55_RS11380 PF13671 AAA domain APT55_RS11385 PF00483 Nucleotidyl transferase APT55_RS11390 PF01571 Aminomethyltransferase folate-binding domain APT55_RS11390 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT55_RS11395 PF01597 Glycine cleavage H-protein APT55_RS11400 PF02347 Glycine cleavage system P-protein APT55_RS11405 PF02132 RecR protein APT55_RS11405 PF13662 Toprim domain APT55_RS11410 PF01230 HIT domain APT55_RS11415 PF00005 ABC transporter APT55_RS11420 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS11425 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS11430 PF00395 S-layer homology domain APT55_RS11430 PF04966 Carbohydrate-selective porin, OprB family APT55_RS11435 PF12849 PBP superfamily domain APT55_RS11445 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS11450 PF01618 APT55_RS11450 APT55_RS11460 PF00805 Pentapeptide repeats (8 copies) APT55_RS11465 PF00805 Pentapeptide repeats (8 copies) APT55_RS11470 PF04485 Phycobilisome degradation protein nblA APT55_RS11480 PF00502 Phycobilisome protein APT55_RS11485 PF05729 NACHT domain APT55_RS11490 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS11490 PF02861 Clp amino terminal domain APT55_RS11490 PF07724 AAA domain (Cdc48 subfamily) APT55_RS11490 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS11500 PF00076 RNA recognition motif APT55_RS11505 PF00504 Chlorophyll A-B binding protein APT55_RS11515 PF13450 NAD(P)-binding Rossmann-like domain APT55_RS11520 PF02469 Fasciclin domain APT55_RS11525 PF09150 Orange carotenoid protein, N-terminal APT55_RS11530 PF02310 B12 binding domain APT55_RS11530 PF04055 Radical SAM superfamily APT55_RS11530 PF13282 APT55_RS11530 APT55_RS11560 PF00510 Cytochrome c oxidase subunit III APT55_RS11570 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT55_RS11575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT55_RS11575 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APT55_RS11580 PF13560 Helix-turn-helix domain APT55_RS11585 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin APT55_RS11590 PF06988 NifT/FixU protein APT55_RS11595 PF04319 APT55_RS11595 APT55_RS11600 PF00682 HMGL-like APT55_RS11605 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS11605 PF11844 Domain of unknown function (DUF3364) APT55_RS11610 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS11615 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APT55_RS11620 PF01106 NifU-like domain APT55_RS11620 PF01592 NifU-like N terminal domain APT55_RS11620 PF04324 BFD-like [2Fe-2S] binding domain APT55_RS11625 PF00266 Aminotransferase class-V APT55_RS11635 PF02579 Dinitrogenase iron-molybdenum cofactor APT55_RS11635 PF04055 Radical SAM superfamily APT55_RS11640 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS11650 PF00210 Ferritin-like domain APT55_RS11655 PF06967 APT55_RS11655 APT55_RS11660 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS11665 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS11670 PF02579 Dinitrogenase iron-molybdenum cofactor APT55_RS11675 PF03270 Protein of unknown function, DUF269 APT55_RS11680 PF05082 Rop-like APT55_RS11685 PF03206 APT55_RS11685 APT55_RS11690 PF00899 ThiF family APT55_RS11695 PF01521 Iron-sulphur cluster biosynthesis APT55_RS11700 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS11705 PF04023 FeoA domain APT55_RS11710 PF14697 4Fe-4S dicluster domain APT55_RS11715 PF03459 TOBE domain APT55_RS11720 PF13531 Bacterial extracellular solute-binding protein APT55_RS11725 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS11730 PF00005 ABC transporter APT55_RS11735 PF00296 Luciferase-like monooxygenase APT55_RS11745 PF01638 HxlR-like helix-turn-helix APT55_RS11755 PF01228 Glycine radical APT55_RS11755 PF02901 Pyruvate formate lyase APT55_RS11760 PF04055 Radical SAM superfamily APT55_RS11760 PF13353 4Fe-4S single cluster domain APT55_RS11765 PF00171 Aldehyde dehydrogenase family APT55_RS11765 PF00465 Iron-containing alcohol dehydrogenase APT55_RS11770 PF13302 Acetyltransferase (GNAT) domain APT55_RS11770 PF13380 CoA binding domain APT55_RS11770 PF13549 ATP-grasp domain APT55_RS11770 PF13607 Succinyl-CoA ligase like flavodoxin domain APT55_RS11775 PF04055 Radical SAM superfamily APT55_RS11775 PF13353 4Fe-4S single cluster domain APT55_RS11780 PF13353 4Fe-4S single cluster domain APT55_RS11785 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APT55_RS11785 PF09363 XFP C-terminal domain APT55_RS11785 PF09364 XFP N-terminal domain APT55_RS11790 PF13176 Tetratricopeptide repeat APT55_RS11800 PF13847 Methyltransferase domain APT55_RS11805 PF14026 Protein of unknown function (DUF4242) APT55_RS11810 PF03704 Bacterial transcriptional activator domain APT55_RS11810 PF13191 AAA ATPase domain APT55_RS11815 PF13371 Tetratricopeptide repeat APT55_RS11815 PF13414 TPR repeat APT55_RS11815 PF13432 Tetratricopeptide repeat APT55_RS11820 PF05491 Holliday junction DNA helicase ruvB C-terminus APT55_RS11820 PF05496 Holliday junction DNA helicase ruvB N-terminus APT55_RS11830 PF01061 APT55_RS11830 APT55_RS11835 PF00005 ABC transporter APT55_RS11835 PF14524 Wzt C-terminal domain APT55_RS11840 PF05711 Macrocin-O-methyltransferase (TylF) APT55_RS11850 PF00936 BMC domain APT55_RS11855 PF04960 Glutaminase APT55_RS11860 PF01928 CYTH domain APT55_RS11865 PF00294 pfkB family carbohydrate kinase APT55_RS11870 PF02579 Dinitrogenase iron-molybdenum cofactor APT55_RS11870 PF16844 APT55_RS11870 APT55_RS11875 PF02082 Transcriptional regulator APT55_RS11880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT55_RS11890 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS11895 PF13414 TPR repeat APT55_RS11895 PF13432 Tetratricopeptide repeat APT55_RS11900 PF01551 Peptidase family M23 APT55_RS11905 PF02321 Outer membrane efflux protein APT55_RS11910 PF06080 APT55_RS11910 APT55_RS11915 PF00133 tRNA synthetases class I (I, L, M and V) APT55_RS11915 PF06827 Zinc finger found in FPG and IleRS APT55_RS11915 PF08264 Anticodon-binding domain of tRNA APT55_RS11920 PF07589 APT55_RS11920 APT55_RS11925 PF01725 Ham1 family APT55_RS11930 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS11935 PF01192 RNA polymerase Rpb6 APT55_RS11945 PF08848 Domain of unknown function (DUF1818) APT55_RS11950 PF12836 Helix-hairpin-helix motif APT55_RS11950 PF13091 PLD-like domain APT55_RS11955 PF00266 Aminotransferase class-V APT55_RS11965 PF00421 Photosystem II protein APT55_RS11970 PF00124 Photosynthetic reaction centre protein APT55_RS11975 PF02392 APT55_RS11975 APT55_RS11980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT55_RS11985 PF00109 Beta-ketoacyl synthase, N-terminal domain APT55_RS11985 PF02801 Beta-ketoacyl synthase, C-terminal domain APT55_RS11990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS11995 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT55_RS11995 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT55_RS12000 PF00925 GTP cyclohydrolase II APT55_RS12000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APT55_RS12005 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS12005 PF00672 HAMP domain APT55_RS12005 PF00989 PAS fold APT55_RS12005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS12010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APT55_RS12010 PF02843 Phosphoribosylglycinamide synthetase, C domain APT55_RS12010 PF02844 Phosphoribosylglycinamide synthetase, N domain APT55_RS12015 PF13181 Tetratricopeptide repeat APT55_RS12020 PF00931 NB-ARC domain APT55_RS12020 PF13176 Tetratricopeptide repeat APT55_RS12020 PF13424 Tetratricopeptide repeat APT55_RS12020 PF13676 TIR domain APT55_RS12035 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS12035 PF01590 GAF domain APT55_RS12035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS12035 PF05231 APT55_RS12035 APT55_RS12040 PF00005 ABC transporter APT55_RS12045 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS12050 PF04069 Substrate binding domain of ABC-type glycine betaine transport system APT55_RS12055 PF00326 Prolyl oligopeptidase family APT55_RS12055 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APT55_RS12065 PF14159 APT55_RS12065 APT55_RS12070 PF09557 APT55_RS12070 APT55_RS12075 PF05239 PRC-barrel domain APT55_RS12075 PF09557 APT55_RS12075 APT55_RS12080 PF03130 PBS lyase HEAT-like repeat APT55_RS12080 PF13646 HEAT repeats APT55_RS12090 PF00355 Rieske [2Fe-2S] domain APT55_RS12095 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS12095 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT55_RS12095 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT55_RS12100 PF13379 NMT1-like family APT55_RS12105 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS12110 PF00005 ABC transporter APT55_RS12110 PF13379 NMT1-like family APT55_RS12115 PF00005 ABC transporter APT55_RS12120 PF08865 APT55_RS12120 APT55_RS12125 PF00384 Molybdopterin oxidoreductase APT55_RS12125 PF01568 Molydopterin dinucleotide binding domain APT55_RS12125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT55_RS12130 PF02586 Uncharacterised ACR, COG2135 APT55_RS12135 PF00581 Rhodanese-like domain APT55_RS12140 PF01551 Peptidase family M23 APT55_RS12145 PF13847 Methyltransferase domain APT55_RS12155 PF01028 Eukaryotic DNA topoisomerase I, catalytic core APT55_RS12160 PF11533 Protein of unknown function (DUF3225) APT55_RS12180 PF00534 Glycosyl transferases group 1 APT55_RS12180 PF13439 Glycosyltransferase Family 4 APT55_RS12185 PF00348 Polyprenyl synthetase APT55_RS12190 PF00504 Chlorophyll A-B binding protein APT55_RS12195 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT55_RS12195 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT55_RS12200 PF00334 Nucleoside diphosphate kinase APT55_RS12205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT55_RS12205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT55_RS12210 PF06055 APT55_RS12210 APT55_RS12215 PF01926 50S ribosome-binding GTPase APT55_RS12215 PF05128 APT55_RS12215 APT55_RS12220 PF11189 APT55_RS12220 APT55_RS12225 PF10792 APT55_RS12225 APT55_RS12230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT55_RS12230 PF03129 Anticodon binding domain APT55_RS12230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT55_RS12235 PF00353 Hemolysin-type calcium-binding repeat (2 copies) APT55_RS12235 PF14252 APT55_RS12235 APT55_RS12255 PF03729 APT55_RS12255 APT55_RS12260 PF00072 Response regulator receiver domain APT55_RS12265 PF00072 Response regulator receiver domain APT55_RS12265 PF00196 Bacterial regulatory proteins, luxR family APT55_RS12275 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS12275 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT55_RS12280 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS12285 PF00515 Tetratricopeptide repeat APT55_RS12285 PF13181 Tetratricopeptide repeat APT55_RS12285 PF13414 TPR repeat APT55_RS12285 PF13432 Tetratricopeptide repeat APT55_RS12290 PF00534 Glycosyl transferases group 1 APT55_RS12290 PF13439 Glycosyltransferase Family 4 APT55_RS12295 PF05977 Transmembrane secretion effector APT55_RS12300 PF02565 Recombination protein O C terminal APT55_RS12300 PF11967 Recombination protein O N terminal APT55_RS12305 PF01791 DeoC/LacD family aldolase APT55_RS12315 PF01555 DNA methylase APT55_RS12320 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS12325 PF04972 BON domain APT55_RS12345 PF14271 APT55_RS12345 APT55_RS12355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APT55_RS12355 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain APT55_RS12365 PF14436 APT55_RS12365 APT55_RS12370 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS12375 PF01636 Phosphotransferase enzyme family APT55_RS12380 PF13847 Methyltransferase domain APT55_RS12385 PF13413 Helix-turn-helix domain APT55_RS12385 PF13464 APT55_RS12385 APT55_RS12390 PF13240 APT55_RS12390 APT55_RS12395 PF14403 APT55_RS12395 APT55_RS12400 PF04168 APT55_RS12400 APT55_RS12405 PF01618 APT55_RS12405 APT55_RS12410 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS12415 PF00230 Major intrinsic protein APT55_RS12420 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain APT55_RS12420 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain APT55_RS12425 PF02341 RbcX protein APT55_RS12430 PF00101 Ribulose bisphosphate carboxylase, small chain APT55_RS12445 PF13470 APT55_RS12445 APT55_RS12450 PF01066 CDP-alcohol phosphatidyltransferase APT55_RS12455 PF00072 Response regulator receiver domain APT55_RS12455 PF13185 GAF domain APT55_RS12460 PF01209 ubiE/COQ5 methyltransferase family APT55_RS12465 PF04286 APT55_RS12465 APT55_RS12470 PF13401 AAA domain APT55_RS12470 PF13538 UvrD-like helicase C-terminal domain APT55_RS12475 PF13612 APT55_RS12475 APT55_RS12480 PF03193 Protein of unknown function, DUF258 APT55_RS12485 PF01206 Sulfurtransferase TusA APT55_RS12490 PF00226 DnaJ domain APT55_RS12490 PF00684 DnaJ central domain APT55_RS12490 PF01556 DnaJ C terminal domain APT55_RS12495 PF00012 Hsp70 protein APT55_RS12500 PF01025 GrpE APT55_RS12505 PF00437 Type II/IV secretion system protein APT55_RS12505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APT55_RS12510 PF00437 Type II/IV secretion system protein APT55_RS12515 PF00482 Type II secretion system (T2SS), protein F APT55_RS12525 PF13370 4Fe-4S single cluster domain APT55_RS12530 PF06868 APT55_RS12530 APT55_RS12535 PF11211 APT55_RS12535 APT55_RS12540 PF00069 Protein kinase domain APT55_RS12545 PF00072 Response regulator receiver domain APT55_RS12545 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS12545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS12565 PF00557 Metallopeptidase family M24 APT55_RS12565 PF05195 Aminopeptidase P, N-terminal domain APT55_RS12570 PF10985 APT55_RS12570 APT55_RS12575 PF13483 Beta-lactamase superfamily domain APT55_RS12580 PF00117 Glutamine amidotransferase class-I APT55_RS12585 PF01219 Prokaryotic diacylglycerol kinase APT55_RS12590 PF02130 Uncharacterized protein family UPF0054 APT55_RS12595 PF11688 APT55_RS12595 APT55_RS12600 PF04079 Putative transcriptional regulators (Ypuh-like) APT55_RS12610 PF00085 Thioredoxin APT55_RS12610 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS12615 PF11347 APT55_RS12615 APT55_RS12620 PF07726 ATPase family associated with various cellular activities (AAA) APT55_RS12625 PF01882 APT55_RS12625 APT55_RS12645 PF00072 Response regulator receiver domain APT55_RS12650 PF00521 DNA gyrase/topoisomerase IV, subunit A APT55_RS12650 PF03989 DNA gyrase C-terminal domain, beta-propeller APT55_RS12655 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT55_RS12660 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS12665 PF01899 APT55_RS12665 APT55_RS12675 PF03334 APT55_RS12675 APT55_RS12680 PF13244 APT55_RS12680 APT55_RS12685 PF04039 APT55_RS12685 APT55_RS12695 PF00535 Glycosyl transferase family 2 APT55_RS12700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT55_RS12705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS12705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT55_RS12710 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS12715 PF01593 Flavin containing amine oxidoreductase APT55_RS12725 PF13489 Methyltransferase domain APT55_RS12730 PF01593 Flavin containing amine oxidoreductase APT55_RS12735 PF01522 Polysaccharide deacetylase APT55_RS12740 PF02397 APT55_RS12740 APT55_RS12745 PF00534 Glycosyl transferases group 1 APT55_RS12750 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS12750 PF02706 Chain length determinant protein APT55_RS12750 PF13807 APT55_RS12750 APT55_RS12760 PF00535 Glycosyl transferase family 2 APT55_RS12765 PF00534 Glycosyl transferases group 1 APT55_RS12765 PF13439 Glycosyltransferase Family 4 APT55_RS12770 PF04932 APT55_RS12770 APT55_RS12775 PF00535 Glycosyl transferase family 2 APT55_RS12780 PF13440 APT55_RS12780 APT55_RS12785 PF00534 Glycosyl transferases group 1 APT55_RS12785 PF13579 Glycosyl transferase 4-like domain APT55_RS12795 PF00149 Calcineurin-like phosphoesterase APT55_RS12800 PF02580 D-Tyr-tRNA(Tyr) deacylase APT55_RS12810 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS12810 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS12815 PF01406 tRNA synthetases class I (C) catalytic domain APT55_RS12815 PF09190 DALR domain APT55_RS12820 PF01523 Putative modulator of DNA gyrase APT55_RS12825 PF01523 Putative modulator of DNA gyrase APT55_RS12830 PF00857 Isochorismatase family APT55_RS12835 PF09721 APT55_RS12835 APT55_RS12850 PF02080 TrkA-C domain APT55_RS12850 PF02254 TrkA-N domain APT55_RS12855 PF02386 Cation transport protein APT55_RS12860 PF08865 APT55_RS12860 APT55_RS12880 PF03775 Septum formation inhibitor MinC, C-terminal domain APT55_RS12885 PF00534 Glycosyl transferases group 1 APT55_RS12885 PF00862 Sucrose synthase APT55_RS12895 PF01551 Peptidase family M23 APT55_RS12900 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS12900 PF00989 PAS fold APT55_RS12900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS12900 PF08448 PAS fold APT55_RS12900 PF13188 PAS domain APT55_RS12905 PF04851 Type III restriction enzyme, res subunit APT55_RS12905 PF16203 APT55_RS12905 APT55_RS12910 PF00027 Cyclic nucleotide-binding domain APT55_RS12920 PF00707 Translation initiation factor IF-3, C-terminal domain APT55_RS12920 PF05198 Translation initiation factor IF-3, N-terminal domain APT55_RS12925 PF12697 Alpha/beta hydrolase family APT55_RS12935 PF00005 ABC transporter APT55_RS12940 PF00223 Photosystem I psaA/psaB protein APT55_RS12945 PF00223 Photosystem I psaA/psaB protein APT55_RS12950 PF00494 Squalene/phytoene synthase APT55_RS12955 PF01878 EVE domain APT55_RS12960 PF00009 Elongation factor Tu GTP binding domain APT55_RS12960 PF00679 Elongation factor G C-terminus APT55_RS12960 PF03144 Elongation factor Tu domain 2 APT55_RS12965 PF00395 S-layer homology domain APT55_RS12965 PF04966 Carbohydrate-selective porin, OprB family APT55_RS12970 PF02082 Transcriptional regulator APT55_RS12975 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS12980 PF00270 DEAD/DEAH box helicase APT55_RS12980 PF00271 Helicase conserved C-terminal domain APT55_RS12980 PF00570 HRDC domain APT55_RS12980 PF09382 RQC domain APT55_RS12980 PF14493 APT55_RS12980 APT55_RS12980 PF16124 APT55_RS12980 APT55_RS12985 PF05154 APT55_RS12985 APT55_RS12995 PF09234 Domain of unknown function (DUF1963) APT55_RS13005 PF00533 BRCA1 C Terminus (BRCT) domain APT55_RS13005 PF01653 NAD-dependent DNA ligase adenylation domain APT55_RS13005 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APT55_RS13005 PF03120 NAD-dependent DNA ligase OB-fold domain APT55_RS13005 PF12826 Helix-hairpin-helix motif APT55_RS13005 PF14520 Helix-hairpin-helix domain APT55_RS13015 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS13025 PF00376 MerR family regulatory protein APT55_RS13025 PF09278 MerR, DNA binding APT55_RS13035 PF00122 E1-E2 ATPase APT55_RS13035 PF00403 Heavy-metal-associated domain APT55_RS13035 PF00702 haloacid dehalogenase-like hydrolase APT55_RS13040 PF00403 Heavy-metal-associated domain APT55_RS13045 PF01522 Polysaccharide deacetylase APT55_RS13045 PF09992 Predicted periplasmic protein (DUF2233) APT55_RS13050 PF13646 HEAT repeats APT55_RS13055 PF00475 Imidazoleglycerol-phosphate dehydratase APT55_RS13065 PF00106 short chain dehydrogenase APT55_RS13070 PF00487 APT55_RS13070 APT55_RS13075 PF13649 Methyltransferase domain APT55_RS13090 PF00391 PEP-utilising enzyme, mobile domain APT55_RS13090 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT55_RS13090 PF02660 APT55_RS13090 APT55_RS13095 PF00395 S-layer homology domain APT55_RS13095 PF04966 Carbohydrate-selective porin, OprB family APT55_RS13105 PF00067 Cytochrome P450 APT55_RS13110 PF05969 Photosystem II complex subunit Ycf12 APT55_RS13115 PF00072 Response regulator receiver domain APT55_RS13115 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13120 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS13120 PF00672 HAMP domain APT55_RS13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS13125 PF12697 Alpha/beta hydrolase family APT55_RS13135 PF13409 Glutathione S-transferase, N-terminal domain APT55_RS13135 PF13410 Glutathione S-transferase, C-terminal domain APT55_RS13150 PF01957 NfeD-like C-terminal, partner-binding APT55_RS13160 PF03706 APT55_RS13160 APT55_RS13180 PF02397 APT55_RS13180 APT55_RS13185 PF01370 NAD dependent epimerase/dehydratase family APT55_RS13190 PF02698 DUF218 domain APT55_RS13195 PF03016 APT55_RS13195 APT55_RS13200 PF00005 ABC transporter APT55_RS13200 PF00664 ABC transporter transmembrane region APT55_RS13205 PF14258 APT55_RS13205 APT55_RS13210 PF13559 APT55_RS13210 APT55_RS13215 PF11833 APT55_RS13215 APT55_RS13220 PF00072 Response regulator receiver domain APT55_RS13220 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13225 PF12263 APT55_RS13225 APT55_RS13230 PF11165 APT55_RS13230 APT55_RS13235 PF03403 Platelet-activating factor acetylhydrolase, isoform II APT55_RS13235 PF07176 APT55_RS13235 APT55_RS13240 PF01509 TruB family pseudouridylate synthase (N terminal domain) APT55_RS13240 PF09157 Pseudouridine synthase II TruB, C-terminal APT55_RS13240 PF16198 APT55_RS13240 APT55_RS13245 PF02391 MoaE protein APT55_RS13250 PF00082 Subtilase family APT55_RS13250 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella APT55_RS13255 PF01926 50S ribosome-binding GTPase APT55_RS13255 PF13167 APT55_RS13255 APT55_RS13255 PF16360 APT55_RS13255 APT55_RS13260 PF00692 dUTPase APT55_RS13270 PF00005 ABC transporter APT55_RS13270 PF00664 ABC transporter transmembrane region APT55_RS13275 PF09335 APT55_RS13275 APT55_RS13280 PF07176 APT55_RS13280 APT55_RS13285 PF13641 Glycosyltransferase like family 2 APT55_RS13290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS13290 PF02706 Chain length determinant protein APT55_RS13290 PF13807 APT55_RS13290 APT55_RS13295 PF03808 APT55_RS13295 APT55_RS13300 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS13305 PF00534 Glycosyl transferases group 1 APT55_RS13310 PF00535 Glycosyl transferase family 2 APT55_RS13315 PF04932 APT55_RS13315 APT55_RS13320 PF00732 GMC oxidoreductase APT55_RS13320 PF05199 GMC oxidoreductase APT55_RS13325 PF01747 ATP-sulfurylase APT55_RS13325 PF14306 PUA-like domain APT55_RS13340 PF13649 Methyltransferase domain APT55_RS13355 PF01979 Amidohydrolase family APT55_RS13370 PF00069 Protein kinase domain APT55_RS13400 PF06803 APT55_RS13400 APT55_RS13410 PF01679 APT55_RS13410 APT55_RS13415 PF04020 APT55_RS13415 APT55_RS13430 PF00502 Phycobilisome protein APT55_RS13435 PF00502 Phycobilisome protein APT55_RS13440 PF03130 PBS lyase HEAT-like repeat APT55_RS13440 PF13646 HEAT repeats APT55_RS13445 PF13646 HEAT repeats APT55_RS13450 PF01383 CpcD/allophycocyanin linker domain APT55_RS13455 PF00427 Phycobilisome Linker polypeptide APT55_RS13455 PF01383 CpcD/allophycocyanin linker domain APT55_RS13460 PF00502 Phycobilisome protein APT55_RS13465 PF00502 Phycobilisome protein APT55_RS13470 PF00072 Response regulator receiver domain APT55_RS13470 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13470 PF01627 Hpt domain APT55_RS13475 PF00072 Response regulator receiver domain APT55_RS13480 PF09367 CpeS-like protein APT55_RS13490 PF01381 Helix-turn-helix APT55_RS13495 PF00427 Phycobilisome Linker polypeptide APT55_RS13500 PF00515 Tetratricopeptide repeat APT55_RS13500 PF13174 Tetratricopeptide repeat APT55_RS13500 PF13432 Tetratricopeptide repeat APT55_RS13505 PF12710 haloacid dehalogenase-like hydrolase APT55_RS13510 PF01207 Dihydrouridine synthase (Dus) APT55_RS13515 PF12698 ABC-2 family transporter protein APT55_RS13520 PF12698 ABC-2 family transporter protein APT55_RS13525 PF00005 ABC transporter APT55_RS13525 PF13732 APT55_RS13525 APT55_RS13530 PF13437 HlyD family secretion protein APT55_RS13530 PF13533 Biotin-lipoyl like APT55_RS13535 PF00440 Bacterial regulatory proteins, tetR family APT55_RS13550 PF05787 Bacterial protein of unknown function (DUF839) APT55_RS13555 PF13441 APT55_RS13555 APT55_RS13560 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APT55_RS13570 PF00072 Response regulator receiver domain APT55_RS13580 PF13181 Tetratricopeptide repeat APT55_RS13580 PF14559 Tetratricopeptide repeat APT55_RS13585 PF00588 SpoU rRNA Methylase family APT55_RS13595 PF01476 LysM domain APT55_RS13595 PF01551 Peptidase family M23 APT55_RS13615 PF14280 APT55_RS13615 APT55_RS13620 PF06514 Photosystem II 12 kDa extrinsic protein (PsbU) APT55_RS13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS13655 PF03466 LysR substrate binding domain APT55_RS13660 PF00920 Dehydratase family APT55_RS13665 PF13358 DDE superfamily endonuclease APT55_RS13670 PF00292 'Paired box' domain APT55_RS13675 PF00353 Hemolysin-type calcium-binding repeat (2 copies) APT55_RS13695 PF13181 Tetratricopeptide repeat APT55_RS13700 PF04307 APT55_RS13700 APT55_RS13730 PF14105 APT55_RS13730 APT55_RS13740 PF00805 Pentapeptide repeats (8 copies) APT55_RS13760 PF00805 Pentapeptide repeats (8 copies) APT55_RS13800 PF01381 Helix-turn-helix APT55_RS13820 PF13361 UvrD-like helicase C-terminal domain APT55_RS13835 PF01609 Transposase DDE domain APT55_RS13860 PF00849 RNA pseudouridylate synthase APT55_RS13865 PF00534 Glycosyl transferases group 1 APT55_RS13865 PF13439 Glycosyltransferase Family 4 APT55_RS13875 PF01370 NAD dependent epimerase/dehydratase family APT55_RS13880 PF06206 CpeT/CpcT family (DUF1001) APT55_RS13885 PF13449 Esterase-like activity of phytase APT55_RS13890 PF00805 Pentapeptide repeats (8 copies) APT55_RS13900 PF13676 TIR domain APT55_RS13905 PF01243 Pyridoxamine 5'-phosphate oxidase APT55_RS13910 PF00403 Heavy-metal-associated domain APT55_RS13920 PF10082 APT55_RS13920 APT55_RS13925 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APT55_RS13930 PF10722 Putative bacterial sensory transduction regulator APT55_RS13935 PF10025 Uncharacterized conserved protein (DUF2267) APT55_RS13940 PF01844 HNH endonuclease APT55_RS13945 PF00005 ABC transporter APT55_RS13950 PF12706 Beta-lactamase superfamily domain APT55_RS13955 PF08486 APT55_RS13955 APT55_RS13965 PF00085 Thioredoxin APT55_RS13970 PF02683 APT55_RS13970 APT55_RS13975 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS13975 PF00672 HAMP domain APT55_RS13975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS13980 PF00072 Response regulator receiver domain APT55_RS13980 PF00486 Transcriptional regulatory protein, C terminal APT55_RS13985 PF00140 Sigma-70 factor, region 1 APT55_RS13985 PF04539 Sigma-70 region 3 APT55_RS13985 PF04542 Sigma-70 region 2 APT55_RS13985 PF04545 Sigma-70, region 4 APT55_RS13990 PF00270 DEAD/DEAH box helicase APT55_RS13990 PF00271 Helicase conserved C-terminal domain APT55_RS13995 PF02547 Queuosine biosynthesis protein APT55_RS14005 PF02547 Queuosine biosynthesis protein APT55_RS14015 PF02021 Uncharacterised protein family UPF0102 APT55_RS14020 PF00805 Pentapeptide repeats (8 copies) APT55_RS14025 PF03851 UV-endonuclease UvdE APT55_RS14030 PF11160 APT55_RS14030 APT55_RS14035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT55_RS14035 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS14040 PF00118 TCP-1/cpn60 chaperonin family APT55_RS14045 PF08543 Phosphomethylpyrimidine kinase APT55_RS14055 PF01757 APT55_RS14055 APT55_RS14060 PF01609 Transposase DDE domain APT55_RS14060 PF13808 APT55_RS14060 APT55_RS14070 PF01936 NYN domain APT55_RS14075 PF06967 APT55_RS14075 APT55_RS14080 PF00072 Response regulator receiver domain APT55_RS14085 PF00072 Response regulator receiver domain APT55_RS14085 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14085 PF08447 PAS fold APT55_RS14085 PF08448 PAS fold APT55_RS14085 PF13426 PAS domain APT55_RS14090 PF00072 Response regulator receiver domain APT55_RS14090 PF00486 Transcriptional regulatory protein, C terminal APT55_RS14090 PF00990 GGDEF domain APT55_RS14090 PF01627 Hpt domain APT55_RS14100 PF00571 CBS domain APT55_RS14100 PF02163 Peptidase family M50 APT55_RS14115 PF01139 tRNA-splicing ligase RtcB APT55_RS14120 PF00924 Mechanosensitive ion channel APT55_RS14125 PF04087 APT55_RS14125 APT55_RS14130 PF13091 PLD-like domain APT55_RS14135 PF00149 Calcineurin-like phosphoesterase APT55_RS14140 PF06724 APT55_RS14140 APT55_RS14145 PF00999 Sodium/hydrogen exchanger family APT55_RS14150 PF12899 APT55_RS14150 APT55_RS14155 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS14160 PF02469 Fasciclin domain APT55_RS14165 PF13847 Methyltransferase domain APT55_RS14170 PF13520 Amino acid permease APT55_RS14180 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14185 PF00072 Response regulator receiver domain APT55_RS14185 PF00486 Transcriptional regulatory protein, C terminal APT55_RS14200 PF00175 Oxidoreductase NAD-binding domain APT55_RS14200 PF01794 APT55_RS14200 APT55_RS14200 PF08022 APT55_RS14200 APT55_RS14205 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT55_RS14205 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT55_RS14210 PF04020 APT55_RS14210 APT55_RS14215 PF02449 Beta-galactosidase APT55_RS14220 PF01594 APT55_RS14220 APT55_RS14225 PF01594 APT55_RS14225 APT55_RS14230 PF01036 Bacteriorhodopsin-like protein APT55_RS14240 PF00571 CBS domain APT55_RS14240 PF01769 Divalent cation transporter APT55_RS14240 PF03448 MgtE intracellular N domain APT55_RS14250 PF06146 APT55_RS14250 APT55_RS14255 PF00999 Sodium/hydrogen exchanger family APT55_RS14260 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14260 PF05227 CHASE3 domain APT55_RS14265 PF00072 Response regulator receiver domain APT55_RS14265 PF00486 Transcriptional regulatory protein, C terminal APT55_RS14270 PF00072 Response regulator receiver domain APT55_RS14275 PF00122 E1-E2 ATPase APT55_RS14275 PF00689 Cation transporting ATPase, C-terminus APT55_RS14275 PF00690 Cation transporter/ATPase, N-terminus APT55_RS14275 PF13246 Putative hydrolase of sodium-potassium ATPase alpha subunit APT55_RS14280 PF03625 Domain of unknown function DUF302 APT55_RS14285 PF03713 Domain of unknown function (DUF305) APT55_RS14290 PF00581 Rhodanese-like domain APT55_RS14290 PF11127 Protein of unknown function (DUF2892) APT55_RS14295 PF00753 Metallo-beta-lactamase superfamily APT55_RS14300 PF01925 APT55_RS14300 APT55_RS14305 PF00581 Rhodanese-like domain APT55_RS14310 PF01022 Bacterial regulatory protein, arsR family APT55_RS14315 PF01177 Asp/Glu/Hydantoin racemase APT55_RS14320 PF06056 Putative ATPase subunit of terminase (gpP-like) APT55_RS14325 PF00392 Bacterial regulatory proteins, gntR family APT55_RS14325 PF07729 FCD domain APT55_RS14335 PF00005 ABC transporter APT55_RS14335 PF08402 TOBE domain APT55_RS14340 PF13416 Bacterial extracellular solute-binding protein APT55_RS14345 PF00395 S-layer homology domain APT55_RS14345 PF04966 Carbohydrate-selective porin, OprB family APT55_RS14350 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS14355 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS14365 PF07883 Cupin domain APT55_RS14370 PF00797 N-acetyltransferase APT55_RS14375 PF12120 Rifampin ADP-ribosyl transferase APT55_RS14380 PF02222 ATP-grasp domain APT55_RS14385 PF00072 Response regulator receiver domain APT55_RS14385 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14385 PF08447 PAS fold APT55_RS14385 PF08448 PAS fold APT55_RS14385 PF13426 PAS domain APT55_RS14385 PF13493 Domain of unknown function (DUF4118) APT55_RS14390 PF00072 Response regulator receiver domain APT55_RS14395 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14395 PF00672 HAMP domain APT55_RS14395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14400 PF00072 Response regulator receiver domain APT55_RS14400 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14400 PF13185 GAF domain APT55_RS14415 PF12697 Alpha/beta hydrolase family APT55_RS14420 PF00248 Aldo/keto reductase family APT55_RS14425 PF00579 tRNA synthetases class I (W and Y) APT55_RS14430 PF02219 Methylenetetrahydrofolate reductase APT55_RS14440 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS14445 PF01841 Transglutaminase-like superfamily APT55_RS14445 PF11992 APT55_RS14445 APT55_RS14445 PF13559 APT55_RS14445 APT55_RS14450 PF10009 APT55_RS14450 APT55_RS14455 PF00448 SRP54-type protein, GTPase domain APT55_RS14455 PF02881 SRP54-type protein, helical bundle domain APT55_RS14455 PF02978 Signal peptide binding domain APT55_RS14465 PF02452 PemK-like protein APT55_RS14470 PF00886 Ribosomal protein S16 APT55_RS14475 PF13083 KH domain APT55_RS14480 PF13450 NAD(P)-binding Rossmann-like domain APT55_RS14485 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS14490 PF16363 APT55_RS14490 APT55_RS14495 PF00535 Glycosyl transferase family 2 APT55_RS14500 PF00534 Glycosyl transferases group 1 APT55_RS14505 PF01368 DHH family APT55_RS14505 PF02272 DHHA1 domain APT55_RS14510 PF02514 APT55_RS14510 APT55_RS14510 PF11965 APT55_RS14510 APT55_RS14520 PF01547 Bacterial extracellular solute-binding protein APT55_RS14525 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS14530 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS14535 PF00005 ABC transporter APT55_RS14535 PF08402 TOBE domain APT55_RS14540 PF05860 haemagglutination activity domain APT55_RS14560 PF00732 GMC oxidoreductase APT55_RS14560 PF05199 GMC oxidoreductase APT55_RS14565 PF01565 FAD binding domain APT55_RS14570 PF14279 APT55_RS14570 APT55_RS14655 PF06467 MYM-type Zinc finger with FCS sequence motif APT55_RS14655 PF13391 APT55_RS14655 APT55_RS14690 PF06271 APT55_RS14690 APT55_RS14700 PF01944 APT55_RS14700 APT55_RS14705 PF00005 ABC transporter APT55_RS14710 PF02687 APT55_RS14710 APT55_RS14710 PF12704 MacB-like periplasmic core domain APT55_RS14715 PF13533 Biotin-lipoyl like APT55_RS14715 PF16576 APT55_RS14715 APT55_RS14725 PF00561 alpha/beta hydrolase fold APT55_RS14730 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14730 PF01590 GAF domain APT55_RS14730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14730 PF03707 APT55_RS14730 APT55_RS14735 PF00850 Histone deacetylase domain APT55_RS14740 PF00881 Nitroreductase family APT55_RS14745 PF00805 Pentapeptide repeats (8 copies) APT55_RS14745 PF13599 Pentapeptide repeats (9 copies) APT55_RS14755 PF01019 Gamma-glutamyltranspeptidase APT55_RS14760 PF01609 Transposase DDE domain APT55_RS14765 PF01019 Gamma-glutamyltranspeptidase APT55_RS14770 PF11860 APT55_RS14770 APT55_RS14775 PF00696 Amino acid kinase family APT55_RS14775 PF01472 PUA domain APT55_RS14780 PF03808 APT55_RS14780 APT55_RS14790 PF00156 Phosphoribosyl transferase domain APT55_RS14795 PF01070 FMN-dependent dehydrogenase APT55_RS14800 PF01773 Na+ dependent nucleoside transporter N-terminus APT55_RS14800 PF07662 Na+ dependent nucleoside transporter C-terminus APT55_RS14800 PF07670 Nucleoside recognition APT55_RS14805 PF05685 Putative restriction endonuclease APT55_RS14810 PF09852 APT55_RS14810 APT55_RS14815 PF11832 APT55_RS14815 APT55_RS14820 PF01783 Ribosomal L32p protein family APT55_RS14825 PF00174 Oxidoreductase molybdopterin binding domain APT55_RS14835 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APT55_RS14835 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APT55_RS14840 PF00348 Polyprenyl synthetase APT55_RS14845 PF02681 APT55_RS14845 APT55_RS14855 PF13676 TIR domain APT55_RS14860 PF09323 APT55_RS14860 APT55_RS14865 PF03773 APT55_RS14865 APT55_RS14870 PF02517 CAAX protease self-immunity APT55_RS14875 PF05154 APT55_RS14875 APT55_RS14885 PF00122 E1-E2 ATPase APT55_RS14885 PF00403 Heavy-metal-associated domain APT55_RS14885 PF00702 haloacid dehalogenase-like hydrolase APT55_RS14890 PF00498 FHA domain APT55_RS14900 PF02223 Thymidylate kinase APT55_RS14905 PF00069 Protein kinase domain APT55_RS14910 PF00534 Glycosyl transferases group 1 APT55_RS14915 PF02016 LD-carboxypeptidase APT55_RS14920 PF00931 NB-ARC domain APT55_RS14925 PF01471 Putative peptidoglycan binding domain APT55_RS14925 PF02557 D-alanyl-D-alanine carboxypeptidase APT55_RS14930 PF01471 Putative peptidoglycan binding domain APT55_RS14935 PF01471 Putative peptidoglycan binding domain APT55_RS14935 PF01510 N-acetylmuramoyl-L-alanine amidase APT55_RS14940 PF12697 Alpha/beta hydrolase family APT55_RS14945 PF01553 Acyltransferase APT55_RS14950 PF00072 Response regulator receiver domain APT55_RS14950 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS14955 PF01590 GAF domain APT55_RS14960 PF13030 APT55_RS14960 APT55_RS14965 PF08241 Methyltransferase domain APT55_RS14980 PF00534 Glycosyl transferases group 1 APT55_RS14985 PF08241 Methyltransferase domain APT55_RS14990 PF00534 Glycosyl transferases group 1 APT55_RS14990 PF13692 Glycosyl transferases group 1 APT55_RS14995 PF16363 APT55_RS14995 APT55_RS15000 PF00534 Glycosyl transferases group 1 APT55_RS15005 PF00534 Glycosyl transferases group 1 APT55_RS15005 PF13439 Glycosyltransferase Family 4 APT55_RS15015 PF06967 APT55_RS15015 APT55_RS15025 PF12831 FAD dependent oxidoreductase APT55_RS15035 PF03574 Peptidase family S48 APT55_RS15040 PF01797 Transposase IS200 like APT55_RS15045 PF12838 4Fe-4S dicluster domain APT55_RS15055 PF01791 DeoC/LacD family aldolase APT55_RS15060 PF12697 Alpha/beta hydrolase family APT55_RS15065 PF00578 AhpC/TSA family APT55_RS15070 PF00535 Glycosyl transferase family 2 APT55_RS15075 PF00534 Glycosyl transferases group 1 APT55_RS15080 PF09655 APT55_RS15080 APT55_RS15085 PF06146 APT55_RS15085 APT55_RS15090 PF00005 ABC transporter APT55_RS15090 PF08402 TOBE domain APT55_RS15095 PF00072 Response regulator receiver domain APT55_RS15100 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS15105 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS15105 PF12911 APT55_RS15105 APT55_RS15110 PF00515 Tetratricopeptide repeat APT55_RS15125 PF00218 Indole-3-glycerol phosphate synthase APT55_RS15130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT55_RS15130 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS15140 PF00521 DNA gyrase/topoisomerase IV, subunit A APT55_RS15140 PF03989 DNA gyrase C-terminal domain, beta-propeller APT55_RS15145 PF08338 Domain of unknown function (DUF1731) APT55_RS15145 PF13460 NADH(P)-binding APT55_RS15180 PF01936 NYN domain APT55_RS15180 PF12872 OST-HTH/LOTUS domain APT55_RS15185 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APT55_RS15185 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APT55_RS15190 PF13529 Peptidase_C39 like family APT55_RS15195 PF00860 Permease family APT55_RS15200 PF00750 tRNA synthetases class I (R) APT55_RS15200 PF03485 Arginyl tRNA synthetase N terminal domain APT55_RS15200 PF05746 DALR anticodon binding domain APT55_RS15205 PF00583 Acetyltransferase (GNAT) family APT55_RS15210 PF01925 APT55_RS15210 APT55_RS15215 PF01327 Polypeptide deformylase APT55_RS15220 PF00005 ABC transporter APT55_RS15220 PF00664 ABC transporter transmembrane region APT55_RS15230 PF01063 Aminotransferase class IV APT55_RS15235 PF01119 DNA mismatch repair protein, C-terminal domain APT55_RS15235 PF08676 MutL C terminal dimerisation domain APT55_RS15235 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS15245 PF00534 Glycosyl transferases group 1 APT55_RS15245 PF13439 Glycosyltransferase Family 4 APT55_RS15250 PF00586 AIR synthase related protein, N-terminal domain APT55_RS15250 PF02769 AIR synthase related protein, C-terminal domain APT55_RS15255 PF00583 Acetyltransferase (GNAT) family APT55_RS15260 PF04055 Radical SAM superfamily APT55_RS15265 PF00795 Carbon-nitrogen hydrolase APT55_RS15275 PF13738 Pyridine nucleotide-disulphide oxidoreductase APT55_RS15280 PF13482 RNase_H superfamily APT55_RS15285 PF05532 CsbD-like APT55_RS15290 PF00271 Helicase conserved C-terminal domain APT55_RS15290 PF02151 UvrB/uvrC motif APT55_RS15290 PF04851 Type III restriction enzyme, res subunit APT55_RS15290 PF12344 Ultra-violet resistance protein B APT55_RS15295 PF14261 APT55_RS15295 APT55_RS15300 PF00248 Aldo/keto reductase family APT55_RS15305 PF03209 APT55_RS15305 APT55_RS15310 PF00578 AhpC/TSA family APT55_RS15320 PF01850 PIN domain APT55_RS15325 PF01297 Periplasmic solute binding protein family APT55_RS15330 PF00005 ABC transporter APT55_RS15335 PF00950 APT55_RS15335 APT55_RS15340 PF00005 ABC transporter APT55_RS15345 PF02687 APT55_RS15345 APT55_RS15345 PF12704 MacB-like periplasmic core domain APT55_RS15350 PF13437 HlyD family secretion protein APT55_RS15350 PF13533 Biotin-lipoyl like APT55_RS15355 PF00395 S-layer homology domain APT55_RS15355 PF04966 Carbohydrate-selective porin, OprB family APT55_RS15360 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS15370 PF07466 APT55_RS15370 APT55_RS15380 PF00395 S-layer homology domain APT55_RS15380 PF04966 Carbohydrate-selective porin, OprB family APT55_RS15385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS15390 PF08547 Complex I intermediate-associated protein 30 (CIA30) APT55_RS15395 PF04116 APT55_RS15395 APT55_RS15400 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APT55_RS15405 PF00534 Glycosyl transferases group 1 APT55_RS15405 PF13439 Glycosyltransferase Family 4 APT55_RS15415 PF00535 Glycosyl transferase family 2 APT55_RS15420 PF01370 NAD dependent epimerase/dehydratase family APT55_RS15425 PF00005 ABC transporter APT55_RS15425 PF00664 ABC transporter transmembrane region APT55_RS15430 PF13471 APT55_RS15430 APT55_RS15435 PF14907 Uncharacterised nucleotidyltransferase APT55_RS15445 PF05729 NACHT domain APT55_RS15445 PF13676 TIR domain APT55_RS15455 PF13347 MFS/sugar transport protein APT55_RS15460 PF00156 Phosphoribosyl transferase domain APT55_RS15465 PF02557 D-alanyl-D-alanine carboxypeptidase APT55_RS15475 PF01545 Cation efflux family APT55_RS15485 PF12796 Ankyrin repeats (3 copies) APT55_RS15490 PF03065 Glycosyl hydrolase family 57 APT55_RS15495 PF01106 NifU-like domain APT55_RS15500 PF11866 APT55_RS15500 APT55_RS15505 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS15505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS15505 PF13492 GAF domain APT55_RS15510 PF07362 Post-segregation antitoxin CcdA APT55_RS15515 PF00009 Elongation factor Tu GTP binding domain APT55_RS15515 PF00679 Elongation factor G C-terminus APT55_RS15515 PF03144 Elongation factor Tu domain 2 APT55_RS15515 PF06421 GTP-binding protein LepA C-terminus APT55_RS15520 PF16363 APT55_RS15520 APT55_RS15525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT55_RS15525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT55_RS15525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT55_RS15530 PF01553 Acyltransferase APT55_RS15540 PF01476 LysM domain APT55_RS15540 PF01551 Peptidase family M23 APT55_RS15545 PF12697 Alpha/beta hydrolase family APT55_RS15555 PF00557 Metallopeptidase family M24 APT55_RS15555 PF05195 Aminopeptidase P, N-terminal domain APT55_RS15560 PF00440 Bacterial regulatory proteins, tetR family APT55_RS15570 PF13529 Peptidase_C39 like family APT55_RS15580 PF12600 APT55_RS15580 APT55_RS15585 PF02532 Photosystem II reaction centre I protein (PSII 4 APT55_RS15595 PF01074 Glycosyl hydrolases family 38 N-terminal domain APT55_RS15595 PF07748 Glycosyl hydrolases family 38 C-terminal domain APT55_RS15595 PF09261 Alpha mannosidase, middle domain APT55_RS15600 PF05016 Plasmid stabilisation system protein APT55_RS15610 PF02468 APT55_RS15610 APT55_RS15615 PF00999 Sodium/hydrogen exchanger family APT55_RS15625 PF01520 N-acetylmuramoyl-L-alanine amidase APT55_RS15625 PF11741 AMIN domain APT55_RS15630 PF14261 APT55_RS15630 APT55_RS15645 PF00656 Caspase domain APT55_RS15645 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS15655 PF01177 Asp/Glu/Hydantoin racemase APT55_RS15665 PF00072 Response regulator receiver domain APT55_RS15665 PF00196 Bacterial regulatory proteins, luxR family APT55_RS15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS15675 PF14065 APT55_RS15675 APT55_RS15680 PF00183 Hsp90 protein APT55_RS15680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS15685 PF07681 APT55_RS15685 APT55_RS15690 PF06868 APT55_RS15690 APT55_RS15695 PF03372 Endonuclease/Exonuclease/phosphatase family APT55_RS15700 PF13091 PLD-like domain APT55_RS15720 PF01926 50S ribosome-binding GTPase APT55_RS15720 PF05128 APT55_RS15720 APT55_RS15730 PF05685 Putative restriction endonuclease APT55_RS15735 PF05685 Putative restriction endonuclease APT55_RS15740 PF12831 FAD dependent oxidoreductase APT55_RS15745 PF04773 FecR protein APT55_RS15750 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS15750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS15750 PF05226 APT55_RS15750 APT55_RS15755 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS15760 PF01131 DNA topoisomerase APT55_RS15760 PF01751 Toprim domain APT55_RS15760 PF13368 APT55_RS15760 APT55_RS15775 PF12728 Helix-turn-helix domain APT55_RS15780 PF13470 APT55_RS15780 APT55_RS15800 PF00989 PAS fold APT55_RS15800 PF08448 PAS fold APT55_RS15800 PF13188 PAS domain APT55_RS15815 PF02661 Fic/DOC family APT55_RS15815 PF13784 Fic/DOC family N-terminal APT55_RS15820 PF00563 EAL domain APT55_RS15820 PF00990 GGDEF domain APT55_RS15830 PF00072 Response regulator receiver domain APT55_RS15885 PF01555 DNA methylase APT55_RS15885 PF04471 Restriction endonuclease APT55_RS15990 PF08707 APT55_RS15990 APT55_RS15990 PF09250 Bifunctional DNA primase/polymerase, N-terminal APT55_RS16010 PF03372 Endonuclease/Exonuclease/phosphatase family APT55_RS16015 PF00069 Protein kinase domain APT55_RS16015 PF00498 FHA domain APT55_RS16020 PF01425 Amidase APT55_RS16025 PF01797 Transposase IS200 like APT55_RS16030 PF13450 NAD(P)-binding Rossmann-like domain APT55_RS16035 PF01814 Hemerythrin HHE cation binding domain APT55_RS16045 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS16050 PF13379 NMT1-like family APT55_RS16055 PF13359 APT55_RS16055 APT55_RS16055 PF13613 APT55_RS16055 APT55_RS16060 PF00005 ABC transporter APT55_RS16070 PF09335 APT55_RS16070 APT55_RS16075 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS16080 PF00561 alpha/beta hydrolase fold APT55_RS16085 PF00675 Insulinase (Peptidase family M16) APT55_RS16085 PF05193 Peptidase M16 inactive domain APT55_RS16090 PF00005 ABC transporter APT55_RS16095 PF02687 APT55_RS16095 APT55_RS16110 PF00140 Sigma-70 factor, region 1 APT55_RS16110 PF04539 Sigma-70 region 3 APT55_RS16110 PF04542 Sigma-70 region 2 APT55_RS16110 PF04545 Sigma-70, region 4 APT55_RS16115 PF13673 Acetyltransferase (GNAT) domain APT55_RS16120 PF13533 Biotin-lipoyl like APT55_RS16120 PF16576 APT55_RS16120 APT55_RS16125 PF00440 Bacterial regulatory proteins, tetR family APT55_RS16130 PF00005 ABC transporter APT55_RS16130 PF00664 ABC transporter transmembrane region APT55_RS16135 PF01634 ATP phosphoribosyltransferase APT55_RS16140 PF00072 Response regulator receiver domain APT55_RS16140 PF00486 Transcriptional regulatory protein, C terminal APT55_RS16145 PF05685 Putative restriction endonuclease APT55_RS16150 PF05685 Putative restriction endonuclease APT55_RS16155 PF03239 APT55_RS16155 APT55_RS16160 PF00781 Diacylglycerol kinase catalytic domain APT55_RS16165 PF01241 Photosystem I psaG / psaK APT55_RS16170 PF01425 Amidase APT55_RS16175 PF13318 APT55_RS16175 APT55_RS16180 PF06094 AIG2-like family APT55_RS16185 PF01220 Dehydroquinase class II APT55_RS16190 PF00994 Probable molybdopterin binding domain APT55_RS16190 PF02464 Competence-damaged protein APT55_RS16195 PF00953 Glycosyl transferase family 4 APT55_RS16200 PF00464 Serine hydroxymethyltransferase APT55_RS16205 PF11103 APT55_RS16205 APT55_RS16205 PF14261 APT55_RS16205 APT55_RS16210 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS16210 PF12804 MobA-like NTP transferase domain APT55_RS16215 PF00762 Ferrochelatase APT55_RS16225 PF00205 Thiamine pyrophosphate enzyme, central domain APT55_RS16225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT55_RS16225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT55_RS16225 PF13240 APT55_RS16225 APT55_RS16230 PF13646 HEAT repeats APT55_RS16240 PF05685 Putative restriction endonuclease APT55_RS16250 PF04367 APT55_RS16250 APT55_RS16255 PF00535 Glycosyl transferase family 2 APT55_RS16280 PF01904 Protein of unknown function DUF72 APT55_RS16285 PF01435 Peptidase family M48 APT55_RS16290 PF01694 Rhomboid family APT55_RS16295 PF03055 Retinal pigment epithelial membrane protein APT55_RS16300 PF03092 APT55_RS16300 APT55_RS16305 PF00504 Chlorophyll A-B binding protein APT55_RS16310 PF07736 Chorismate mutase type I APT55_RS16315 PF01343 Peptidase family S49 APT55_RS16320 PF00892 EamA-like transporter family APT55_RS16325 PF13646 HEAT repeats APT55_RS16345 PF05685 Putative restriction endonuclease APT55_RS16360 PF13424 Tetratricopeptide repeat APT55_RS16365 PF00226 DnaJ domain APT55_RS16365 PF00805 Pentapeptide repeats (8 copies) APT55_RS16370 PF02563 Polysaccharide biosynthesis/export protein APT55_RS16370 PF10531 SLBB domain APT55_RS16375 PF00534 Glycosyl transferases group 1 APT55_RS16375 PF13439 Glycosyltransferase Family 4 APT55_RS16380 PF00534 Glycosyl transferases group 1 APT55_RS16380 PF13439 Glycosyltransferase Family 4 APT55_RS16385 PF00534 Glycosyl transferases group 1 APT55_RS16385 PF13439 Glycosyltransferase Family 4 APT55_RS16390 PF11165 APT55_RS16390 APT55_RS16395 PF02643 Uncharacterized ACR, COG1430 APT55_RS16400 PF00072 Response regulator receiver domain APT55_RS16400 PF00486 Transcriptional regulatory protein, C terminal APT55_RS16405 PF01513 ATP-NAD kinase APT55_RS16410 PF13460 NADH(P)-binding APT55_RS16415 PF01022 Bacterial regulatory protein, arsR family APT55_RS16420 PF08041 PetM family of cytochrome b6f complex subunit 7 APT55_RS16425 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT55_RS16430 PF14217 APT55_RS16430 APT55_RS16435 PF01678 Diaminopimelate epimerase APT55_RS16450 PF01850 PIN domain APT55_RS16455 PF00805 Pentapeptide repeats (8 copies) APT55_RS16460 PF00999 Sodium/hydrogen exchanger family APT55_RS16460 PF02080 TrkA-C domain APT55_RS16460 PF02254 TrkA-N domain APT55_RS16465 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS16465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS16465 PF07689 KaiB domain APT55_RS16475 PF01523 Putative modulator of DNA gyrase APT55_RS16480 PF02542 YgbB family APT55_RS16485 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS16485 PF01590 GAF domain APT55_RS16485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS16485 PF10069 APT55_RS16485 APT55_RS16485 PF17150 APT55_RS16485 APT55_RS16490 PF02531 PsaD APT55_RS16495 PF00425 chorismate binding enzyme APT55_RS16495 PF04715 Anthranilate synthase component I, N terminal region APT55_RS16505 PF01548 APT55_RS16505 APT55_RS16505 PF02371 APT55_RS16505 APT55_RS16515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APT55_RS16515 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APT55_RS16520 PF04055 Radical SAM superfamily APT55_RS16525 PF02517 CAAX protease self-immunity APT55_RS16530 PF02617 ATP-dependent Clp protease adaptor protein ClpS APT55_RS16540 PF01740 STAS domain APT55_RS16545 PF04055 Radical SAM superfamily APT55_RS16545 PF10105 APT55_RS16545 APT55_RS16555 PF10150 Ribonuclease E/G family APT55_RS16560 PF01351 Ribonuclease HII APT55_RS16565 PF09366 APT55_RS16565 APT55_RS16570 PF00800 Prephenate dehydratase APT55_RS16570 PF01842 ACT domain APT55_RS16575 PF02190 ATP-dependent protease La (LON) domain APT55_RS16580 PF00338 Ribosomal protein S10p/S20e APT55_RS16585 PF05685 Putative restriction endonuclease APT55_RS16595 PF00009 Elongation factor Tu GTP binding domain APT55_RS16595 PF03143 Elongation factor Tu C-terminal domain APT55_RS16595 PF03144 Elongation factor Tu domain 2 APT55_RS16600 PF00009 Elongation factor Tu GTP binding domain APT55_RS16600 PF00679 Elongation factor G C-terminus APT55_RS16600 PF03144 Elongation factor Tu domain 2 APT55_RS16600 PF03764 Elongation factor G, domain IV APT55_RS16600 PF14492 Elongation Factor G, domain II APT55_RS16605 PF00177 Ribosomal protein S7p/S5e APT55_RS16610 PF00164 Ribosomal protein S12/S23 APT55_RS16615 PF01521 Iron-sulphur cluster biosynthesis APT55_RS16620 PF01050 Mannose-6-phosphate isomerase APT55_RS16625 PF09992 Predicted periplasmic protein (DUF2233) APT55_RS16630 PF00310 Glutamine amidotransferases class-II APT55_RS16630 PF01493 GXGXG motif APT55_RS16630 PF01645 Conserved region in glutamate synthase APT55_RS16630 PF04898 Glutamate synthase central domain APT55_RS16635 PF01724 Domain of unknown function DUF29 APT55_RS16645 PF04471 Restriction endonuclease APT55_RS16645 PF14338 APT55_RS16645 APT55_RS16655 PF00753 Metallo-beta-lactamase superfamily APT55_RS16655 PF07521 RNA-metabolising metallo-beta-lactamase APT55_RS16660 PF00701 Dihydrodipicolinate synthetase family APT55_RS16665 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT55_RS16665 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT55_RS16670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT55_RS16670 PF05697 Bacterial trigger factor protein (TF) APT55_RS16670 PF05698 Bacterial trigger factor protein (TF) C-terminus APT55_RS16675 PF00574 Clp protease APT55_RS16680 PF06689 ClpX C4-type zinc finger APT55_RS16680 PF07724 AAA domain (Cdc48 subfamily) APT55_RS16680 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS16685 PF00561 alpha/beta hydrolase fold APT55_RS16690 PF04055 Radical SAM superfamily APT55_RS16695 PF00196 Bacterial regulatory proteins, luxR family APT55_RS16705 PF00124 Photosynthetic reaction centre protein APT55_RS16710 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS16710 PF13676 TIR domain APT55_RS16715 PF13676 TIR domain APT55_RS16720 PF05128 APT55_RS16720 APT55_RS16725 PF01817 Chorismate mutase type II APT55_RS16730 PF02875 Mur ligase family, glutamate ligase domain APT55_RS16730 PF08245 Mur ligase middle domain APT55_RS16735 PF01029 NusB family APT55_RS16735 PF01189 NOL1/NOP2/sun family APT55_RS16740 PF05099 Tellurite resistance protein TerB APT55_RS16750 PF00905 Penicillin binding protein transpeptidase domain APT55_RS16750 PF00912 Transglycosylase APT55_RS16755 PF01040 UbiA prenyltransferase family APT55_RS16760 PF02374 Anion-transporting ATPase APT55_RS16765 PF11061 APT55_RS16765 APT55_RS16770 PF08239 Bacterial SH3 domain APT55_RS16775 PF08239 Bacterial SH3 domain APT55_RS16780 PF00206 Lyase APT55_RS16780 PF10397 Adenylosuccinate lyase C-terminus APT55_RS16785 PF00857 Isochorismatase family APT55_RS16795 PF01895 PhoU domain APT55_RS16800 PF00498 FHA domain APT55_RS16800 PF12773 APT55_RS16800 APT55_RS16810 PF00953 Glycosyl transferase family 4 APT55_RS16810 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APT55_RS16815 PF11332 APT55_RS16815 APT55_RS16820 PF04755 APT55_RS16820 APT55_RS16825 PF12705 PD-(D/E)XK nuclease superfamily APT55_RS16830 PF05235 CHAD domain APT55_RS16835 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS16840 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS16845 PF13416 Bacterial extracellular solute-binding protein APT55_RS16850 PF00005 ABC transporter APT55_RS16850 PF08402 TOBE domain APT55_RS16855 PF11780 APT55_RS16855 APT55_RS16860 PF01701 Photosystem I reaction centre subunit IX / PsaJ APT55_RS16865 PF02507 Photosystem I reaction centre subunit III APT55_RS16870 PF00814 Glycoprotease family APT55_RS16910 PF05272 APT55_RS16910 APT55_RS16910 PF08707 APT55_RS16910 APT55_RS16910 PF09250 Bifunctional DNA primase/polymerase, N-terminal APT55_RS16920 PF07878 APT55_RS16920 APT55_RS16935 PF00589 Phage integrase family APT55_RS16960 PF00589 Phage integrase family APT55_RS16965 PF00072 Response regulator receiver domain APT55_RS16970 PF00072 Response regulator receiver domain APT55_RS16975 PF01584 CheW-like domain APT55_RS16980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS16980 PF01590 GAF domain APT55_RS16985 PF00072 Response regulator receiver domain APT55_RS16985 PF01584 CheW-like domain APT55_RS16985 PF01627 Hpt domain APT55_RS16985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS16990 PF01584 CheW-like domain APT55_RS16995 PF00535 Glycosyl transferase family 2 APT55_RS17015 PF03109 APT55_RS17015 APT55_RS17020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT55_RS17025 PF03649 APT55_RS17025 APT55_RS17030 PF07689 KaiB domain APT55_RS17035 PF04055 Radical SAM superfamily APT55_RS17040 PF03364 Polyketide cyclase / dehydrase and lipid transport APT55_RS17050 PF10057 APT55_RS17050 APT55_RS17055 PF00072 Response regulator receiver domain APT55_RS17060 PF00171 Aldehyde dehydrogenase family APT55_RS17065 PF00205 Thiamine pyrophosphate enzyme, central domain APT55_RS17065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT55_RS17065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT55_RS17070 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS17075 PF13649 Methyltransferase domain APT55_RS17080 PF00535 Glycosyl transferase family 2 APT55_RS17085 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) APT55_RS17090 PF02441 Flavoprotein APT55_RS17095 PF00575 S1 RNA binding domain APT55_RS17095 PF00773 RNB domain APT55_RS17095 PF08206 Ribonuclease B OB domain APT55_RS17100 PF13462 Thioredoxin APT55_RS17110 PF00543 Nitrogen regulatory protein P-II APT55_RS17120 PF14489 QueF-like protein APT55_RS17125 PF02915 Rubrerythrin APT55_RS17130 PF01126 Heme oxygenase APT55_RS17135 PF04055 Radical SAM superfamily APT55_RS17135 PF06969 HemN C-terminal domain APT55_RS17140 PF00395 S-layer homology domain APT55_RS17140 PF07602 APT55_RS17140 APT55_RS17150 PF06041 Bacterial protein of unknown function (DUF924) APT55_RS17155 PF00502 Phycobilisome protein APT55_RS17175 PF00733 Asparagine synthase APT55_RS17175 PF13537 Glutamine amidotransferase domain APT55_RS17180 PF03912 Psb28 protein APT55_RS17185 PF00994 Probable molybdopterin binding domain APT55_RS17190 PF00163 Ribosomal protein S4/S9 N-terminal domain APT55_RS17190 PF01479 S4 domain APT55_RS17195 PF00072 Response regulator receiver domain APT55_RS17200 PF00775 Dioxygenase APT55_RS17210 PF00072 Response regulator receiver domain APT55_RS17210 PF00486 Transcriptional regulatory protein, C terminal APT55_RS17215 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS17215 PF00672 HAMP domain APT55_RS17215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS17220 PF01728 FtsJ-like methyltransferase APT55_RS17225 PF00122 E1-E2 ATPase APT55_RS17225 PF00702 haloacid dehalogenase-like hydrolase APT55_RS17230 PF01345 APT55_RS17230 APT55_RS17240 PF01345 APT55_RS17240 APT55_RS17245 PF01345 APT55_RS17245 APT55_RS17255 PF00072 Response regulator receiver domain APT55_RS17255 PF00486 Transcriptional regulatory protein, C terminal APT55_RS17255 PF00990 GGDEF domain APT55_RS17265 PF00488 MutS domain V APT55_RS17265 PF01624 MutS domain I APT55_RS17265 PF05188 MutS domain II APT55_RS17265 PF05190 MutS family domain IV APT55_RS17265 PF05192 MutS domain III APT55_RS17270 PF00563 EAL domain APT55_RS17270 PF00989 PAS fold APT55_RS17270 PF00990 GGDEF domain APT55_RS17270 PF13426 PAS domain APT55_RS17275 PF00561 alpha/beta hydrolase fold APT55_RS17280 PF00849 RNA pseudouridylate synthase APT55_RS17290 PF00326 Prolyl oligopeptidase family APT55_RS17290 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APT55_RS17295 PF13440 APT55_RS17295 APT55_RS17295 PF14667 Polysaccharide biosynthesis C-terminal domain APT55_RS17300 PF08847 APT55_RS17300 APT55_RS17305 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APT55_RS17305 PF09364 XFP N-terminal domain APT55_RS17310 PF01850 PIN domain APT55_RS17320 PF13744 Helix-turn-helix domain APT55_RS17325 PF05973 APT55_RS17325 APT55_RS17330 PF00931 NB-ARC domain APT55_RS17330 PF13424 Tetratricopeptide repeat APT55_RS17350 PF00916 APT55_RS17350 APT55_RS17350 PF01740 STAS domain APT55_RS17355 PF01435 Peptidase family M48 APT55_RS17360 PF00977 Histidine biosynthesis protein APT55_RS17365 PF01694 Rhomboid family APT55_RS17375 PF01679 APT55_RS17375 APT55_RS17380 PF00581 Rhodanese-like domain APT55_RS17390 PF04773 FecR protein APT55_RS17395 PF13181 Tetratricopeptide repeat APT55_RS17395 PF13414 TPR repeat APT55_RS17400 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT55_RS17405 PF00453 Ribosomal protein L20 APT55_RS17410 PF01632 Ribosomal protein L35 APT55_RS17415 PF00395 S-layer homology domain APT55_RS17415 PF04966 Carbohydrate-selective porin, OprB family APT55_RS17420 PF02576 Uncharacterised BCR, YhbC family COG0779 APT55_RS17425 PF08529 NusA N-terminal domain APT55_RS17425 PF13184 NusA-like KH domain APT55_RS17430 PF04296 Protein of unknown function (DUF448) APT55_RS17435 PF00009 Elongation factor Tu GTP binding domain APT55_RS17435 PF04760 Translation initiation factor IF-2, N-terminal region APT55_RS17435 PF11987 Translation-initiation factor 2 APT55_RS17440 PF03783 Curli production assembly/transport component CsgG APT55_RS17445 PF04685 Protein of unknown function, DUF608 APT55_RS17445 PF12215 APT55_RS17445 APT55_RS17455 PF13520 Amino acid permease APT55_RS17460 PF14261 APT55_RS17460 APT55_RS17465 PF00515 Tetratricopeptide repeat APT55_RS17465 PF07719 Tetratricopeptide repeat APT55_RS17465 PF12770 APT55_RS17465 APT55_RS17465 PF13432 Tetratricopeptide repeat APT55_RS17480 PF00542 Ribosomal protein L7/L12 C-terminal domain APT55_RS17480 PF16320 APT55_RS17480 APT55_RS17485 PF00466 Ribosomal protein L10 APT55_RS17490 PF00687 Ribosomal protein L1p/L10e family APT55_RS17495 PF00298 Ribosomal protein L11, RNA binding domain APT55_RS17495 PF03946 Ribosomal protein L11, N-terminal domain APT55_RS17500 PF02357 Transcription termination factor nusG APT55_RS17505 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APT55_RS17515 PF01245 Ribosomal protein L19 APT55_RS17520 PF01891 Cobalt uptake substrate-specific transmembrane region APT55_RS17525 PF13190 APT55_RS17525 APT55_RS17530 PF02361 Cobalt transport protein APT55_RS17535 PF00005 ABC transporter APT55_RS17550 PF00255 Glutathione peroxidase APT55_RS17555 PF01094 Receptor family ligand binding region APT55_RS17560 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APT55_RS17565 PF00005 ABC transporter APT55_RS17570 PF06182 APT55_RS17570 APT55_RS17575 PF06182 APT55_RS17575 APT55_RS17580 PF16313 APT55_RS17580 APT55_RS17580 PF17148 APT55_RS17580 APT55_RS17580 PF17162 APT55_RS17580 APT55_RS17585 PF05050 Methyltransferase FkbM domain APT55_RS17590 PF01960 ArgJ family APT55_RS17595 PF02637 GatB domain APT55_RS17595 PF02934 GatB/GatE catalytic domain APT55_RS17600 PF12773 APT55_RS17600 APT55_RS17600 PF13672 Protein phosphatase 2C APT55_RS17605 PF13238 AAA domain APT55_RS17610 PF14217 APT55_RS17610 APT55_RS17615 PF00682 HMGL-like APT55_RS17615 PF08502 LeuA allosteric (dimerisation) domain APT55_RS17620 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS17630 PF01266 FAD dependent oxidoreductase APT55_RS17635 PF05690 Thiazole biosynthesis protein ThiG APT55_RS17645 PF13738 Pyridine nucleotide-disulphide oxidoreductase APT55_RS17670 PF00149 Calcineurin-like phosphoesterase APT55_RS17675 PF00266 Aminotransferase class-V APT55_RS17680 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS17685 PF00535 Glycosyl transferase family 2 APT55_RS17690 PF00248 Aldo/keto reductase family APT55_RS17700 PF07085 DRTGG domain APT55_RS17700 PF13500 AAA domain APT55_RS17705 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS17710 PF13433 Periplasmic binding protein domain APT55_RS17715 PF02653 APT55_RS17715 APT55_RS17720 PF02653 APT55_RS17720 APT55_RS17725 PF00005 ABC transporter APT55_RS17725 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT55_RS17730 PF00005 ABC transporter APT55_RS17745 PF03602 Conserved hypothetical protein 95 APT55_RS17750 PF00117 Glutamine amidotransferase class-I APT55_RS17755 PF01470 Pyroglutamyl peptidase APT55_RS17760 PF05685 Putative restriction endonuclease APT55_RS17765 PF11850 APT55_RS17765 APT55_RS17770 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS17770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS17775 PF02719 Polysaccharide biosynthesis protein APT55_RS17780 PF14234 APT55_RS17780 APT55_RS17785 PF01103 Surface antigen APT55_RS17785 PF08479 POTRA domain, ShlB-type APT55_RS17790 PF01063 Aminotransferase class IV APT55_RS17795 PF12697 Alpha/beta hydrolase family APT55_RS17810 PF01565 FAD binding domain APT55_RS17810 PF02913 FAD linked oxidases, C-terminal domain APT55_RS17825 PF01593 Flavin containing amine oxidoreductase APT55_RS17830 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella APT55_RS17835 PF00857 Isochorismatase family APT55_RS17840 PF01103 Surface antigen APT55_RS17840 PF07244 Surface antigen variable number repeat APT55_RS17840 PF08479 POTRA domain, ShlB-type APT55_RS17850 PF00069 Protein kinase domain APT55_RS17850 PF13458 Periplasmic binding protein APT55_RS17855 PF04493 Endonuclease V APT55_RS17865 PF04306 APT55_RS17865 APT55_RS17870 PF01435 Peptidase family M48 APT55_RS17875 PF00534 Glycosyl transferases group 1 APT55_RS17875 PF13439 Glycosyltransferase Family 4 APT55_RS17880 PF01513 ATP-NAD kinase APT55_RS17885 PF00881 Nitroreductase family APT55_RS17895 PF00391 PEP-utilising enzyme, mobile domain APT55_RS17895 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT55_RS17895 PF02896 PEP-utilising enzyme, TIM barrel domain APT55_RS17900 PF05067 Manganese containing catalase APT55_RS17905 PF00107 Zinc-binding dehydrogenase APT55_RS17905 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS17905 PF13823 Alcohol dehydrogenase GroES-associated APT55_RS17910 PF01223 DNA/RNA non-specific endonuclease APT55_RS17915 PF05626 APT55_RS17915 APT55_RS17920 PF01037 AsnC family APT55_RS17920 PF13404 AsnC-type helix-turn-helix domain APT55_RS17925 PF09084 NMT1/THI5 like APT55_RS17930 PF00355 Rieske [2Fe-2S] domain APT55_RS17930 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT55_RS17935 PF01261 Xylose isomerase-like TIM barrel APT55_RS17940 PF00204 DNA gyrase B APT55_RS17940 PF00986 DNA gyrase B subunit, carboxyl terminus APT55_RS17940 PF01751 Toprim domain APT55_RS17940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS17945 PF01715 IPP transferase APT55_RS17950 PF08852 APT55_RS17950 APT55_RS17955 PF04545 Sigma-70, region 4 APT55_RS17960 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein APT55_RS17965 PF00672 HAMP domain APT55_RS17965 PF11845 APT55_RS17965 APT55_RS17970 PF00656 Caspase domain APT55_RS17975 PF00005 ABC transporter APT55_RS17975 PF00664 ABC transporter transmembrane region APT55_RS17980 PF05185 PRMT5 arginine-N-methyltransferase APT55_RS17990 PF03848 Tellurite resistance protein TehB APT55_RS17995 PF00733 Asparagine synthase APT55_RS17995 PF13537 Glutamine amidotransferase domain APT55_RS18000 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APT55_RS18005 PF13471 APT55_RS18005 APT55_RS18005 PF14907 Uncharacterised nucleotidyltransferase APT55_RS18010 PF00043 Glutathione S-transferase, C-terminal domain APT55_RS18010 PF02798 Glutathione S-transferase, N-terminal domain APT55_RS18015 PF00005 ABC transporter APT55_RS18020 PF08241 Methyltransferase domain APT55_RS18025 PF00149 Calcineurin-like phosphoesterase APT55_RS18040 PF13181 Tetratricopeptide repeat APT55_RS18040 PF13365 Trypsin-like peptidase domain APT55_RS18040 PF13371 Tetratricopeptide repeat APT55_RS18040 PF13432 Tetratricopeptide repeat APT55_RS18075 PF00072 Response regulator receiver domain APT55_RS18075 PF00196 Bacterial regulatory proteins, luxR family APT55_RS18080 PF01966 HD domain APT55_RS18085 PF03572 Peptidase family S41 APT55_RS18085 PF13180 PDZ domain APT55_RS18090 PF00033 Cytochrome b(N-terminal)/b6/petB APT55_RS18095 PF00032 Cytochrome b(C-terminal)/b6/petD APT55_RS18100 PF05685 Putative restriction endonuclease APT55_RS18105 PF02653 APT55_RS18105 APT55_RS18110 PF13847 Methyltransferase domain APT55_RS18120 PF00082 Subtilase family APT55_RS18135 PF11016 APT55_RS18135 APT55_RS18140 PF01016 Ribosomal L27 protein APT55_RS18145 PF00829 Ribosomal prokaryotic L21 protein APT55_RS18150 PF05239 PRC-barrel domain APT55_RS18155 PF02441 Flavoprotein APT55_RS18155 PF04127 DNA / pantothenate metabolism flavoprotein APT55_RS18165 PF00069 Protein kinase domain APT55_RS18165 PF00400 WD domain, G-beta repeat APT55_RS18170 PF02597 ThiS family APT55_RS18175 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS18180 PF02597 ThiS family APT55_RS18185 PF00395 S-layer homology domain APT55_RS18185 PF04966 Carbohydrate-selective porin, OprB family APT55_RS18195 PF00005 ABC transporter APT55_RS18195 PF00664 ABC transporter transmembrane region APT55_RS18200 PF01936 NYN domain APT55_RS18205 PF01625 Peptide methionine sulfoxide reductase APT55_RS18210 PF07521 RNA-metabolising metallo-beta-lactamase APT55_RS18210 PF12706 Beta-lactamase superfamily domain APT55_RS18225 PF00571 CBS domain APT55_RS18225 PF01769 Divalent cation transporter APT55_RS18225 PF03448 MgtE intracellular N domain APT55_RS18230 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT55_RS18230 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT55_RS18235 PF01593 Flavin containing amine oxidoreductase APT55_RS18240 PF03869 Arc-like DNA binding domain APT55_RS18245 PF02452 PemK-like protein APT55_RS18250 PF02080 TrkA-C domain APT55_RS18250 PF02254 TrkA-N domain APT55_RS18250 PF07885 Ion channel APT55_RS18255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS18255 PF00672 HAMP domain APT55_RS18255 PF01590 GAF domain APT55_RS18270 PF02625 XdhC and CoxI family APT55_RS18270 PF13478 XdhC Rossmann domain APT55_RS18275 PF14384 APT55_RS18275 APT55_RS18280 PF04365 Protein of unknown function (DUF497) APT55_RS18285 PF01300 Telomere recombination APT55_RS18300 PF09991 APT55_RS18300 APT55_RS18305 PF02277 Phosphoribosyltransferase APT55_RS18315 PF01554 MatE APT55_RS18320 PF00692 dUTPase APT55_RS18325 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APT55_RS18330 PF02405 APT55_RS18330 APT55_RS18335 PF01544 CorA-like Mg2+ transporter protein APT55_RS18355 PF13563 2'-5' RNA ligase superfamily APT55_RS18360 PF12697 Alpha/beta hydrolase family APT55_RS18365 PF01724 Domain of unknown function DUF29 APT55_RS18370 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS18370 PF00101 Ribulose bisphosphate carboxylase, small chain APT55_RS18380 PF00977 Histidine biosynthesis protein APT55_RS18395 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS18400 PF06868 APT55_RS18400 APT55_RS18405 PF06803 APT55_RS18405 APT55_RS18410 PF03600 Citrate transporter APT55_RS18425 PF01844 HNH endonuclease APT55_RS18430 PF07452 APT55_RS18430 APT55_RS18435 PF04542 Sigma-70 region 2 APT55_RS18435 PF04545 Sigma-70, region 4 APT55_RS18440 PF10099 APT55_RS18440 APT55_RS18445 PF00583 Acetyltransferase (GNAT) family APT55_RS18450 PF02770 Acyl-CoA dehydrogenase, middle domain APT55_RS18450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT55_RS18450 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT55_RS18455 PF01638 HxlR-like helix-turn-helix APT55_RS18455 PF02036 SCP-2 sterol transfer family APT55_RS18460 PF04255 Protein of unknown function (DUF433) APT55_RS18470 PF13410 Glutathione S-transferase, C-terminal domain APT55_RS18470 PF13417 Glutathione S-transferase, N-terminal domain APT55_RS18475 PF00591 Glycosyl transferase family, a/b domain APT55_RS18475 PF02885 Glycosyl transferase family, helical bundle domain APT55_RS18480 PF00563 EAL domain APT55_RS18485 PF05685 Putative restriction endonuclease APT55_RS18490 PF01061 APT55_RS18490 APT55_RS18495 PF00005 ABC transporter APT55_RS18495 PF13732 APT55_RS18495 APT55_RS18500 PF02136 Nuclear transport factor 2 (NTF2) domain APT55_RS18500 PF09150 Orange carotenoid protein, N-terminal APT55_RS18515 PF01594 APT55_RS18515 APT55_RS18520 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS18520 PF12911 APT55_RS18520 APT55_RS18525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT55_RS18535 PF13641 Glycosyltransferase like family 2 APT55_RS18540 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS18545 PF00005 ABC transporter APT55_RS18545 PF08402 TOBE domain APT55_RS18555 PF00106 short chain dehydrogenase APT55_RS18560 PF09383 NIL domain APT55_RS18565 PF00310 Glutamine amidotransferases class-II APT55_RS18565 PF01493 GXGXG motif APT55_RS18565 PF01645 Conserved region in glutamate synthase APT55_RS18565 PF04898 Glutamate synthase central domain APT55_RS18570 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS18570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT55_RS18575 PF00593 TonB dependent receptor APT55_RS18575 PF07715 TonB-dependent Receptor Plug Domain APT55_RS18580 PF01523 Putative modulator of DNA gyrase APT55_RS18585 PF01523 Putative modulator of DNA gyrase APT55_RS18590 PF01256 Carbohydrate kinase APT55_RS18590 PF03853 YjeF-related protein N-terminus APT55_RS18625 PF02810 SEC-C motif APT55_RS18625 PF08378 APT55_RS18625 APT55_RS18640 PF00589 Phage integrase family APT55_RS18645 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT55_RS18645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT55_RS18650 PF00149 Calcineurin-like phosphoesterase APT55_RS18655 PF11322 APT55_RS18655 APT55_RS18660 PF00395 S-layer homology domain APT55_RS18665 PF02694 APT55_RS18665 APT55_RS18670 PF03976 Polyphosphate kinase 2 (PPK2) APT55_RS18675 PF00120 Glutamine synthetase, catalytic domain APT55_RS18675 PF12437 Glutamine synthetase type III N terminal APT55_RS18680 PF12706 Beta-lactamase superfamily domain APT55_RS18685 PF00719 Inorganic pyrophosphatase APT55_RS18690 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS18690 PF00585 C-terminal regulatory domain of Threonine dehydratase APT55_RS18695 PF11927 APT55_RS18695 APT55_RS18700 PF00206 Lyase APT55_RS18700 PF10415 Fumarase C C-terminus APT55_RS18705 PF00561 alpha/beta hydrolase fold APT55_RS18710 PF00639 PPIC-type PPIASE domain APT55_RS18720 PF00515 Tetratricopeptide repeat APT55_RS18720 PF07719 Tetratricopeptide repeat APT55_RS18720 PF13414 TPR repeat APT55_RS18720 PF13432 Tetratricopeptide repeat APT55_RS18720 PF13480 Acetyltransferase (GNAT) domain APT55_RS18745 PF13437 HlyD family secretion protein APT55_RS18745 PF13533 Biotin-lipoyl like APT55_RS18750 PF00005 ABC transporter APT55_RS18750 PF00027 Cyclic nucleotide-binding domain APT55_RS18750 PF00664 ABC transporter transmembrane region APT55_RS18750 PF03412 Peptidase C39 family APT55_RS18760 PF01207 Dihydrouridine synthase (Dus) APT55_RS18765 PF16868 APT55_RS18765 APT55_RS18770 PF00005 ABC transporter APT55_RS18775 PF12698 ABC-2 family transporter protein APT55_RS18780 PF09822 APT55_RS18780 APT55_RS18790 PF06089 APT55_RS18790 APT55_RS18795 PF00005 ABC transporter APT55_RS18795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT55_RS18800 PF00902 Sec-independent protein translocase protein (TatC) APT55_RS18805 PF00069 Protein kinase domain APT55_RS18810 PF00107 Zinc-binding dehydrogenase APT55_RS18825 PF13531 Bacterial extracellular solute-binding protein APT55_RS18830 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS18835 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS18840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT55_RS18840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT55_RS18850 PF00873 AcrB/AcrD/AcrF family APT55_RS18855 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS18855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS18860 PF00248 Aldo/keto reductase family APT55_RS18865 PF00504 Chlorophyll A-B binding protein APT55_RS18870 PF00580 UvrD/REP helicase N-terminal domain APT55_RS18870 PF13361 UvrD-like helicase C-terminal domain APT55_RS18875 PF00072 Response regulator receiver domain APT55_RS18875 PF00196 Bacterial regulatory proteins, luxR family APT55_RS18880 PF00156 Phosphoribosyl transferase domain APT55_RS18900 PF00571 CBS domain APT55_RS18900 PF01595 APT55_RS18900 APT55_RS18900 PF03471 Transporter associated domain APT55_RS18905 PF00364 Biotin-requiring enzyme APT55_RS18910 PF01132 Elongation factor P (EF-P) OB domain APT55_RS18910 PF08207 Elongation factor P (EF-P) KOW-like domain APT55_RS18910 PF09285 Elongation factor P, C-terminal APT55_RS18915 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT55_RS18925 PF05917 APT55_RS18925 APT55_RS18930 PF13676 TIR domain APT55_RS18935 PF13612 APT55_RS18935 APT55_RS18940 PF00400 WD domain, G-beta repeat APT55_RS18945 PF01266 FAD dependent oxidoreductase APT55_RS18950 PF02230 Phospholipase/Carboxylesterase APT55_RS18955 PF01808 AICARFT/IMPCHase bienzyme APT55_RS18955 PF02142 MGS-like domain APT55_RS18960 PF13301 APT55_RS18960 APT55_RS18965 PF03065 Glycosyl hydrolase family 57 APT55_RS18965 PF09210 Domain of unknown function (DUF1957) APT55_RS18975 PF00534 Glycosyl transferases group 1 APT55_RS18975 PF13439 Glycosyltransferase Family 4 APT55_RS18980 PF00072 Response regulator receiver domain APT55_RS18980 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS18980 PF00989 PAS fold APT55_RS18980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS18980 PF08447 PAS fold APT55_RS18980 PF08448 PAS fold APT55_RS18980 PF13188 PAS domain APT55_RS18985 PF01241 Photosystem I psaG / psaK APT55_RS18990 PF00809 Pterin binding enzyme APT55_RS18995 PF01145 SPFH domain / Band 7 family APT55_RS19000 PF00072 Response regulator receiver domain APT55_RS19000 PF12452 APT55_RS19000 APT55_RS19010 PF01475 Ferric uptake regulator family APT55_RS19015 PF14229 APT55_RS19015 APT55_RS19020 PF13673 Acetyltransferase (GNAT) domain APT55_RS19030 PF00072 Response regulator receiver domain APT55_RS19030 PF00196 Bacterial regulatory proteins, luxR family APT55_RS19035 PF03551 Transcriptional regulator PadR-like family APT55_RS19040 PF12046 APT55_RS19040 APT55_RS19045 PF11352 APT55_RS19045 APT55_RS19050 PF01590 GAF domain APT55_RS19050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19055 PF00395 S-layer homology domain APT55_RS19070 PF01008 Initiation factor 2 subunit family APT55_RS19075 PF00994 Probable molybdopterin binding domain APT55_RS19075 PF03453 MoeA N-terminal region (domain I and II) APT55_RS19075 PF03454 MoeA C-terminal region (domain IV) APT55_RS19080 PF00091 Tubulin/FtsZ family, GTPase domain APT55_RS19080 PF12327 FtsZ family, C-terminal domain APT55_RS19085 PF08478 POTRA domain, FtsQ-type APT55_RS19090 PF13767 APT55_RS19090 APT55_RS19095 PF10052 Protein of unknown function (DUF2288) APT55_RS19100 PF02698 DUF218 domain APT55_RS19105 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) APT55_RS19105 PF13414 TPR repeat APT55_RS19105 PF13432 Tetratricopeptide repeat APT55_RS19110 PF02511 Thymidylate synthase complementing protein APT55_RS19115 PF01618 APT55_RS19115 APT55_RS19120 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS19125 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APT55_RS19125 PF12557 Cob(I)alamin adenosyltransferase N terminal APT55_RS19130 PF07705 CARDB APT55_RS19135 PF01510 N-acetylmuramoyl-L-alanine amidase APT55_RS19145 PF13181 Tetratricopeptide repeat APT55_RS19145 PF13414 TPR repeat APT55_RS19145 PF13432 Tetratricopeptide repeat APT55_RS19145 PF14559 Tetratricopeptide repeat APT55_RS19150 PF11209 APT55_RS19150 APT55_RS19155 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS19155 PF01434 Peptidase family M41 APT55_RS19160 PF13581 Histidine kinase-like ATPase domain APT55_RS19165 PF01138 3' exoribonuclease family, domain 1 APT55_RS19165 PF03725 3' exoribonuclease family, domain 2 APT55_RS19170 PF05685 Putative restriction endonuclease APT55_RS19175 PF01336 OB-fold nucleic acid binding domain APT55_RS19175 PF02811 PHP domain APT55_RS19175 PF07733 Bacterial DNA polymerase III alpha subunit APT55_RS19175 PF14579 Helix-hairpin-helix motif APT55_RS19185 PF11026 APT55_RS19185 APT55_RS19200 PF02653 APT55_RS19200 APT55_RS19205 PF00005 ABC transporter APT55_RS19205 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT55_RS19210 PF13767 APT55_RS19210 APT55_RS19220 PF00360 Phytochrome region APT55_RS19220 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS19220 PF01590 GAF domain APT55_RS19220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19225 PF00756 Putative esterase APT55_RS19230 PF00107 Zinc-binding dehydrogenase APT55_RS19230 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS19235 PF01837 APT55_RS19235 APT55_RS19240 PF13181 Tetratricopeptide repeat APT55_RS19240 PF13424 Tetratricopeptide repeat APT55_RS19240 PF13432 Tetratricopeptide repeat APT55_RS19245 PF01890 Cobalamin synthesis G C-terminus APT55_RS19250 PF00805 Pentapeptide repeats (8 copies) APT55_RS19255 PF02222 ATP-grasp domain APT55_RS19260 PF13302 Acetyltransferase (GNAT) domain APT55_RS19270 PF00675 Insulinase (Peptidase family M16) APT55_RS19270 PF05193 Peptidase M16 inactive domain APT55_RS19275 PF00675 Insulinase (Peptidase family M16) APT55_RS19275 PF05193 Peptidase M16 inactive domain APT55_RS19280 PF00551 Formyl transferase APT55_RS19280 PF02911 Formyl transferase, C-terminal domain APT55_RS19295 PF10118 APT55_RS19295 APT55_RS19300 PF00072 Response regulator receiver domain APT55_RS19300 PF00196 Bacterial regulatory proteins, luxR family APT55_RS19305 PF07730 Histidine kinase APT55_RS19310 PF00005 ABC transporter APT55_RS19315 PF09912 APT55_RS19315 APT55_RS19330 PF03928 Domain of unknown function (DUF336) APT55_RS19335 PF02608 Basic membrane protein APT55_RS19340 PF01979 Amidohydrolase family APT55_RS19345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT55_RS19350 PF03928 Domain of unknown function (DUF336) APT55_RS19365 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS19365 PF01590 GAF domain APT55_RS19365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19370 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS19370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19370 PF03707 APT55_RS19370 APT55_RS19370 PF12860 APT55_RS19370 APT55_RS19375 PF01914 APT55_RS19375 APT55_RS19380 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS19380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS19380 PF08448 PAS fold APT55_RS19395 PF00589 Phage integrase family APT55_RS19445 PF13148 APT55_RS19445 APT55_RS19465 PF13443 Cro/C1-type HTH DNA-binding domain APT55_RS19485 PF15919 APT55_RS19485 APT55_RS19500 PF13443 Cro/C1-type HTH DNA-binding domain APT55_RS19520 PF13411 MerR HTH family regulatory protein APT55_RS19540 PF01402 Ribbon-helix-helix protein, copG family APT55_RS19550 PF10387 Protein of unknown function (DUF2442) APT55_RS19555 PF13711 APT55_RS19555 APT55_RS19585 PF05860 haemagglutination activity domain APT55_RS19605 PF04828 Glutathione-dependent formaldehyde-activating enzyme APT55_RS19610 PF05163 DinB family APT55_RS19630 PF13376 APT55_RS19630 APT55_RS19690 PF08861 APT55_RS19690 APT55_RS19715 PF00535 Glycosyl transferase family 2 APT55_RS19775 PF09950 APT55_RS19775 APT55_RS19785 PF09979 APT55_RS19785 APT55_RS19810 PF03551 Transcriptional regulator PadR-like family APT55_RS19820 PF06381 APT55_RS19820 APT55_RS19845 PF00589 Phage integrase family APT55_RS19845 PF13495 Phage integrase, N-terminal SAM-like domain APT55_RS19860 PF11300 APT55_RS19860 APT55_RS19865 PF04542 Sigma-70 region 2 APT55_RS19875 PF00589 Phage integrase family APT55_RS19875 PF12167 APT55_RS19875 APT55_RS19890 PF01420 Type I restriction modification DNA specificity domain APT55_RS19895 PF01934 Protein of unknown function DUF86 APT55_RS19900 PF01909 Nucleotidyltransferase domain APT55_RS19905 PF01934 Protein of unknown function DUF86 APT55_RS19910 PF01909 Nucleotidyltransferase domain APT55_RS19915 PF02384 N-6 DNA Methylase APT55_RS19915 PF12161 HsdM N-terminal domain APT55_RS19925 PF00271 Helicase conserved C-terminal domain APT55_RS19925 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APT55_RS19925 PF04851 Type III restriction enzyme, res subunit APT55_RS19925 PF08463 APT55_RS19925 APT55_RS19940 PF01289 Thiol-activated cytolysin APT55_RS19945 PF00149 Calcineurin-like phosphoesterase APT55_RS19945 PF02872 5'-nucleotidase, C-terminal domain APT55_RS19950 PF00881 Nitroreductase family APT55_RS19955 PF13230 Glutamine amidotransferases class-II APT55_RS19960 PF01979 Amidohydrolase family APT55_RS19965 PF05118 Aspartyl/Asparaginyl beta-hydroxylase APT55_RS19970 PF12680 SnoaL-like domain APT55_RS19975 PF01042 Endoribonuclease L-PSP APT55_RS19980 PF00107 Zinc-binding dehydrogenase APT55_RS19980 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS19985 PF05853 Prokaryotic protein of unknown function (DUF849) APT55_RS19990 PF00561 alpha/beta hydrolase fold APT55_RS20000 PF00171 Aldehyde dehydrogenase family APT55_RS20005 PF00795 Carbon-nitrogen hydrolase APT55_RS20010 PF08894 APT55_RS20010 APT55_RS20015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS20020 PF01625 Peptide methionine sulfoxide reductase APT55_RS20025 PF02417 APT55_RS20025 APT55_RS20030 PF07883 Cupin domain APT55_RS20040 PF00355 Rieske [2Fe-2S] domain APT55_RS20040 PF08417 APT55_RS20040 APT55_RS20045 PF01764 Lipase (class 3) APT55_RS20055 PF13548 APT55_RS20055 APT55_RS20060 PF00515 Tetratricopeptide repeat APT55_RS20065 PF01253 Translation initiation factor SUI1 APT55_RS20075 PF00171 Aldehyde dehydrogenase family APT55_RS20085 PF09720 APT55_RS20085 APT55_RS20090 PF00571 CBS domain APT55_RS20090 PF01595 APT55_RS20090 APT55_RS20090 PF03471 Transporter associated domain APT55_RS20095 PF00270 DEAD/DEAH box helicase APT55_RS20095 PF00271 Helicase conserved C-terminal domain APT55_RS20095 PF02559 CarD-like/TRCF domain APT55_RS20095 PF03461 TRCF domain APT55_RS20105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS20110 PF01975 Survival protein SurE APT55_RS20115 PF00365 Phosphofructokinase APT55_RS20120 PF01926 50S ribosome-binding GTPase APT55_RS20120 PF07650 KH domain APT55_RS20125 PF08814 XisH protein APT55_RS20130 PF08869 XisI protein APT55_RS20135 PF02449 Beta-galactosidase APT55_RS20140 PF04093 APT55_RS20140 APT55_RS20145 PF04085 rod shape-determining protein MreC APT55_RS20150 PF06723 MreB/Mbl protein APT55_RS20155 PF00436 Single-strand binding protein family APT55_RS20160 PF07813 LTXXQ motif family protein APT55_RS20170 PF04542 Sigma-70 region 2 APT55_RS20170 PF08281 Sigma-70, region 4 APT55_RS20175 PF07700 Heme NO binding APT55_RS20180 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS20180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS20180 PF07701 Heme NO binding associated APT55_RS20185 PF00106 short chain dehydrogenase APT55_RS20190 PF00549 CoA-ligase APT55_RS20190 PF08442 ATP-grasp domain APT55_RS20195 PF00549 CoA-ligase APT55_RS20195 PF02629 CoA binding domain APT55_RS20200 PF00924 Mechanosensitive ion channel APT55_RS20205 PF01471 Putative peptidoglycan binding domain APT55_RS20205 PF10128 APT55_RS20205 APT55_RS20210 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APT55_RS20210 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APT55_RS20215 PF00923 Transaldolase APT55_RS20220 PF00316 Fructose-1-6-bisphosphatase APT55_RS20225 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS20230 PF07862 APT55_RS20230 APT55_RS20235 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS20250 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin APT55_RS20255 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS20260 PF01018 GTP1/OBG APT55_RS20260 PF01926 50S ribosome-binding GTPase APT55_RS20265 PF00069 Protein kinase domain APT55_RS20270 PF05996 Ferredoxin-dependent bilin reductase APT55_RS20280 PF00107 Zinc-binding dehydrogenase APT55_RS20280 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS20285 PF07681 APT55_RS20285 APT55_RS20290 PF13407 Periplasmic binding protein domain APT55_RS20295 PF00005 ABC transporter APT55_RS20300 PF02653 APT55_RS20300 APT55_RS20315 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS20320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT55_RS20320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT55_RS20325 PF00480 ROK family APT55_RS20325 PF13412 Winged helix-turn-helix DNA-binding APT55_RS20335 PF04198 Putative sugar-binding domain APT55_RS20340 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS20345 PF01547 Bacterial extracellular solute-binding protein APT55_RS20350 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS20355 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS20360 PF00005 ABC transporter APT55_RS20360 PF08402 TOBE domain APT55_RS20365 PF01232 Mannitol dehydrogenase Rossmann domain APT55_RS20365 PF08125 Mannitol dehydrogenase C-terminal domain APT55_RS20405 PF10990 APT55_RS20405 APT55_RS20415 PF07007 Protein of unknown function (DUF1311) APT55_RS20425 PF05598 APT55_RS20425 APT55_RS20470 PF00892 EamA-like transporter family APT55_RS20475 PF00561 alpha/beta hydrolase fold APT55_RS20480 PF00027 Cyclic nucleotide-binding domain APT55_RS20480 PF00924 Mechanosensitive ion channel APT55_RS20485 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS20485 PF08447 PAS fold APT55_RS20490 PF14256 APT55_RS20490 APT55_RS20495 PF00027 Cyclic nucleotide-binding domain APT55_RS20495 PF13545 Crp-like helix-turn-helix domain APT55_RS20500 PF07883 Cupin domain APT55_RS20505 PF00072 Response regulator receiver domain APT55_RS20505 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS20505 PF01590 GAF domain APT55_RS20505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS20505 PF08447 PAS fold APT55_RS20505 PF08448 PAS fold APT55_RS20510 PF00072 Response regulator receiver domain APT55_RS20510 PF00196 Bacterial regulatory proteins, luxR family APT55_RS20520 PF13612 APT55_RS20520 APT55_RS20525 PF13439 Glycosyltransferase Family 4 APT55_RS20525 PF13692 Glycosyl transferases group 1 APT55_RS20535 PF00395 S-layer homology domain APT55_RS20535 PF04966 Carbohydrate-selective porin, OprB family APT55_RS20540 PF01593 Flavin containing amine oxidoreductase APT55_RS20540 PF13450 NAD(P)-binding Rossmann-like domain APT55_RS20550 PF04932 APT55_RS20550 APT55_RS20560 PF00133 tRNA synthetases class I (I, L, M and V) APT55_RS20560 PF08264 Anticodon-binding domain of tRNA APT55_RS20560 PF10458 Valyl tRNA synthetase tRNA binding arm APT55_RS20560 PF14159 APT55_RS20560 APT55_RS20570 PF00485 Phosphoribulokinase / Uridine kinase family APT55_RS20575 PF00175 Oxidoreductase NAD-binding domain APT55_RS20575 PF01383 CpcD/allophycocyanin linker domain APT55_RS20585 PF00578 AhpC/TSA family APT55_RS20590 PF01370 NAD dependent epimerase/dehydratase family APT55_RS20595 PF16363 APT55_RS20595 APT55_RS20600 PF02397 APT55_RS20600 APT55_RS20605 PF00534 Glycosyl transferases group 1 APT55_RS20605 PF13439 Glycosyltransferase Family 4 APT55_RS20610 PF02163 Peptidase family M50 APT55_RS20625 PF00072 Response regulator receiver domain APT55_RS20625 PF01590 GAF domain APT55_RS20625 PF07228 Stage II sporulation protein E (SpoIIE) APT55_RS20630 PF13581 Histidine kinase-like ATPase domain APT55_RS20635 PF01553 Acyltransferase APT55_RS20640 PF00698 Acyl transferase domain APT55_RS20645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT55_RS20645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT55_RS20650 PF02504 Fatty acid synthesis protein APT55_RS20655 PF09852 APT55_RS20655 APT55_RS20660 PF00498 FHA domain APT55_RS20665 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase APT55_RS20665 PF09363 XFP C-terminal domain APT55_RS20665 PF09364 XFP N-terminal domain APT55_RS20670 PF00805 Pentapeptide repeats (8 copies) APT55_RS20680 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS20680 PF01590 GAF domain APT55_RS20680 PF13426 PAS domain APT55_RS20685 PF00313 'Cold-shock' DNA-binding domain APT55_RS20685 PF06961 APT55_RS20685 APT55_RS20690 PF00936 BMC domain APT55_RS20695 PF03073 TspO/MBR family APT55_RS20700 PF02469 Fasciclin domain APT55_RS20710 PF04250 APT55_RS20710 APT55_RS20715 PF10825 APT55_RS20715 APT55_RS20725 PF00355 Rieske [2Fe-2S] domain APT55_RS20745 PF00155 Aminotransferase class I and II APT55_RS20750 PF13646 HEAT repeats APT55_RS20755 PF03364 Polyketide cyclase / dehydrase and lipid transport APT55_RS20765 PF02653 APT55_RS20765 APT55_RS20770 PF00551 Formyl transferase APT55_RS20775 PF16734 APT55_RS20775 APT55_RS20780 PF04577 APT55_RS20780 APT55_RS20785 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS20800 PF09925 APT55_RS20800 APT55_RS20805 PF13576 Pentapeptide repeats (9 copies) APT55_RS20810 PF03816 Cell envelope-related transcriptional attenuator domain APT55_RS20810 PF13399 LytR cell envelope-related transcriptional attenuator APT55_RS20815 PF11832 APT55_RS20815 APT55_RS20820 PF03647 Transmembrane proteins 14C APT55_RS20825 PF03171 2OG-Fe(II) oxygenase superfamily APT55_RS20825 PF14226 non-haem dioxygenase in morphine synthesis N-terminal APT55_RS20835 PF08819 APT55_RS20835 APT55_RS20840 PF13326 Photosystem II Pbs27 APT55_RS20845 PF06485 APT55_RS20845 APT55_RS20860 PF00502 Phycobilisome protein APT55_RS20865 PF00120 Glutamine synthetase, catalytic domain APT55_RS20865 PF03951 Glutamine synthetase, beta-Grasp domain APT55_RS20870 PF13649 Methyltransferase domain APT55_RS20875 PF07878 APT55_RS20875 APT55_RS20880 PF05016 Plasmid stabilisation system protein APT55_RS20885 PF01409 tRNA synthetases class II core domain (F) APT55_RS20885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APT55_RS20890 PF01975 Survival protein SurE APT55_RS20895 PF09493 APT55_RS20895 APT55_RS20900 PF00805 Pentapeptide repeats (8 copies) APT55_RS20905 PF10742 APT55_RS20905 APT55_RS20910 PF01078 Magnesium chelatase, subunit ChlI APT55_RS20915 PF13365 Trypsin-like peptidase domain APT55_RS20925 PF04255 Protein of unknown function (DUF433) APT55_RS20930 PF00311 Phosphoenolpyruvate carboxylase APT55_RS20950 PF13500 AAA domain APT55_RS20955 PF00069 Protein kinase domain APT55_RS20960 PF08495 APT55_RS20960 APT55_RS20960 PF10442 APT55_RS20960 APT55_RS20965 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS20965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS20970 PF03473 MOSC domain APT55_RS20970 PF03476 MOSC N-terminal beta barrel domain APT55_RS20980 PF05729 NACHT domain APT55_RS20980 PF13676 TIR domain APT55_RS20985 PF01541 GIY-YIG catalytic domain APT55_RS21000 PF03109 APT55_RS21000 APT55_RS21010 PF07995 Glucose / Sorbosone dehydrogenase APT55_RS21020 PF13460 NADH(P)-binding APT55_RS21030 PF03742 PetN APT55_RS21040 PF00909 Ammonium Transporter Family APT55_RS21045 PF00909 Ammonium Transporter Family APT55_RS21050 PF01668 SmpB protein APT55_RS21055 PF00515 Tetratricopeptide repeat APT55_RS21055 PF07719 Tetratricopeptide repeat APT55_RS21055 PF13181 Tetratricopeptide repeat APT55_RS21055 PF13414 TPR repeat APT55_RS21055 PF13432 Tetratricopeptide repeat APT55_RS21065 PF00561 alpha/beta hydrolase fold APT55_RS21070 PF01740 STAS domain APT55_RS21075 PF00504 Chlorophyll A-B binding protein APT55_RS21080 PF00395 S-layer homology domain APT55_RS21080 PF04966 Carbohydrate-selective porin, OprB family APT55_RS21085 PF00124 Photosynthetic reaction centre protein APT55_RS21095 PF00005 ABC transporter APT55_RS21105 PF04014 Antidote-toxin recognition MazE APT55_RS21110 PF02661 Fic/DOC family APT55_RS21115 PF05991 APT55_RS21115 APT55_RS21120 PF00005 ABC transporter APT55_RS21120 PF00498 FHA domain APT55_RS21120 PF12698 ABC-2 family transporter protein APT55_RS21125 PF13759 Putative 2OG-Fe(II) oxygenase APT55_RS21130 PF01548 APT55_RS21130 APT55_RS21135 PF04471 Restriction endonuclease APT55_RS21140 PF12697 Alpha/beta hydrolase family APT55_RS21145 PF00696 Amino acid kinase family APT55_RS21155 PF01565 FAD binding domain APT55_RS21165 PF00330 Aconitase family (aconitate hydratase) APT55_RS21180 PF14106 APT55_RS21180 APT55_RS21185 PF13649 Methyltransferase domain APT55_RS21190 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS21190 PF13520 Amino acid permease APT55_RS21195 PF01250 Ribosomal protein S6 APT55_RS21200 PF01557 Fumarylacetoacetate (FAA) hydrolase family APT55_RS21200 PF10370 Domain of unknown function (DUF2437) APT55_RS21205 PF16166 APT55_RS21205 APT55_RS21215 PF00072 Response regulator receiver domain APT55_RS21215 PF13487 HD domain APT55_RS21220 PF00149 Calcineurin-like phosphoesterase APT55_RS21225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT55_RS21225 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS21230 PF09335 APT55_RS21230 APT55_RS21235 PF01126 Heme oxygenase APT55_RS21240 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT55_RS21240 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT55_RS21245 PF06967 APT55_RS21245 APT55_RS21250 PF08241 Methyltransferase domain APT55_RS21255 PF01040 UbiA prenyltransferase family APT55_RS21275 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS21280 PF03663 Glycosyl hydrolase family 76 APT55_RS21280 PF16990 APT55_RS21280 APT55_RS21285 PF00216 Bacterial DNA-binding protein APT55_RS21290 PF00210 Ferritin-like domain APT55_RS21305 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APT55_RS21310 PF02445 Quinolinate synthetase A protein APT55_RS21315 PF07005 Protein of unknown function, DUF1537 APT55_RS21315 PF17042 APT55_RS21315 APT55_RS21325 PF00805 Pentapeptide repeats (8 copies) APT55_RS21330 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT55_RS21335 PF00438 S-adenosylmethionine synthetase, N-terminal domain APT55_RS21335 PF02772 S-adenosylmethionine synthetase, central domain APT55_RS21335 PF02773 S-adenosylmethionine synthetase, C-terminal domain APT55_RS21340 PF13672 Protein phosphatase 2C APT55_RS21345 PF03109 APT55_RS21345 APT55_RS21355 PF00069 Protein kinase domain APT55_RS21360 PF00487 APT55_RS21360 APT55_RS21365 PF06838 Methionine gamma-lyase APT55_RS21370 PF00892 EamA-like transporter family APT55_RS21375 PF00561 alpha/beta hydrolase fold APT55_RS21380 PF08844 APT55_RS21380 APT55_RS21385 PF00210 Ferritin-like domain APT55_RS21390 PF02195 ParB-like nuclease domain APT55_RS21395 PF08486 APT55_RS21395 APT55_RS21400 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS21405 PF00561 alpha/beta hydrolase fold APT55_RS21410 PF00795 Carbon-nitrogen hydrolase APT55_RS21425 PF07466 APT55_RS21425 APT55_RS21450 PF06305 APT55_RS21450 APT55_RS21455 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT55_RS21455 PF14572 Phosphoribosyl synthetase-associated domain APT55_RS21460 PF09424 Yqey-like protein APT55_RS21465 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS21465 PF02861 Clp amino terminal domain APT55_RS21465 PF07724 AAA domain (Cdc48 subfamily) APT55_RS21465 PF10431 C-terminal, D2-small domain, of ClpB protein APT55_RS21470 PF02514 APT55_RS21470 APT55_RS21470 PF11965 APT55_RS21470 APT55_RS21480 PF00571 CBS domain APT55_RS21480 PF00654 Voltage gated chloride channel APT55_RS21485 PF14250 APT55_RS21485 APT55_RS21490 PF13180 PDZ domain APT55_RS21490 PF13365 Trypsin-like peptidase domain APT55_RS21495 PF04298 APT55_RS21495 APT55_RS21500 PF01966 HD domain APT55_RS21505 PF02410 Oligomerisation domain APT55_RS21515 PF09367 CpeS-like protein APT55_RS21520 PF07602 APT55_RS21520 APT55_RS21525 PF02581 Thiamine monophosphate synthase/TENI APT55_RS21530 PF02597 ThiS family APT55_RS21535 PF01790 APT55_RS21535 APT55_RS21545 PF13369 APT55_RS21545 APT55_RS21545 PF13371 Tetratricopeptide repeat APT55_RS21550 PF10604 Polyketide cyclase / dehydrase and lipid transport APT55_RS21555 PF05552 Conserved TM helix APT55_RS21560 PF00005 ABC transporter APT55_RS21565 PF11165 APT55_RS21565 APT55_RS21570 PF00182 Chitinase class I APT55_RS21575 PF02698 DUF218 domain APT55_RS21580 PF02915 Rubrerythrin APT55_RS21590 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS21600 PF12169 DNA polymerase III subunits gamma and tau domain III APT55_RS21600 PF13177 DNA polymerase III, delta subunit APT55_RS21600 PF14890 Intein splicing domain APT55_RS21605 PF00905 Penicillin binding protein transpeptidase domain APT55_RS21605 PF03717 Penicillin-binding Protein dimerisation domain APT55_RS21610 PF00155 Aminotransferase class I and II APT55_RS21615 PF04087 APT55_RS21615 APT55_RS21620 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT55_RS21620 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT55_RS21625 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS21625 PF00941 FAD binding domain in molybdopterin dehydrogenase APT55_RS21625 PF01799 [2Fe-2S] binding domain APT55_RS21625 PF03450 CO dehydrogenase flavoprotein C-terminal domain APT55_RS21630 PF06094 AIG2-like family APT55_RS21635 PF01494 FAD binding domain APT55_RS21640 PF09349 OHCU decarboxylase APT55_RS21645 PF01546 Peptidase family M20/M25/M40 APT55_RS21645 PF07687 Peptidase dimerisation domain APT55_RS21650 PF13365 Trypsin-like peptidase domain APT55_RS21665 PF14534 Domain of unknown function (DUF4440) APT55_RS21680 PF01850 PIN domain APT55_RS21685 PF01909 Nucleotidyltransferase domain APT55_RS21690 PF02696 APT55_RS21690 APT55_RS21695 PF13302 Acetyltransferase (GNAT) domain APT55_RS21700 PF01926 50S ribosome-binding GTPase APT55_RS21700 PF10396 GTP-binding protein TrmE N-terminus APT55_RS21700 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE APT55_RS21705 PF00113 Enolase, C-terminal TIM barrel domain APT55_RS21705 PF03952 Enolase, N-terminal domain APT55_RS21715 PF00557 Metallopeptidase family M24 APT55_RS21720 PF03702 Uncharacterised protein family (UPF0075) APT55_RS21730 PF00069 Protein kinase domain APT55_RS21735 PF00582 Universal stress protein family APT55_RS21745 PF01330 RuvA N terminal domain APT55_RS21745 PF07499 RuvA, C-terminal domain APT55_RS21745 PF14520 Helix-hairpin-helix domain APT55_RS21750 PF05116 Sucrose-6F-phosphate phosphohydrolase APT55_RS21755 PF06202 Amylo-alpha-1,6-glucosidase APT55_RS21755 PF12439 APT55_RS21755 APT55_RS21765 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS21770 PF00085 Thioredoxin APT55_RS21775 PF08282 haloacid dehalogenase-like hydrolase APT55_RS21785 PF00174 Oxidoreductase molybdopterin binding domain APT55_RS21790 PF01844 HNH endonuclease APT55_RS21800 PF01687 Riboflavin kinase APT55_RS21800 PF06574 FAD synthetase APT55_RS21805 PF02638 APT55_RS21805 APT55_RS21810 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS21815 PF00576 HIUase/Transthyretin family APT55_RS21830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS21830 PF03466 LysR substrate binding domain APT55_RS21840 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS21845 PF00502 Phycobilisome protein APT55_RS21850 PF02830 V4R domain APT55_RS21860 PF00502 Phycobilisome protein APT55_RS21865 PF02830 V4R domain APT55_RS21870 PF00069 Protein kinase domain APT55_RS21875 PF07298 APT55_RS21875 APT55_RS21880 PF00085 Thioredoxin APT55_RS21890 PF00085 Thioredoxin APT55_RS21895 PF00155 Aminotransferase class I and II APT55_RS21915 PF00072 Response regulator receiver domain APT55_RS21915 PF00486 Transcriptional regulatory protein, C terminal APT55_RS21920 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS21920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS21920 PF05227 CHASE3 domain APT55_RS21925 PF00551 Formyl transferase APT55_RS21925 PF01842 ACT domain APT55_RS21930 PF14238 APT55_RS21930 APT55_RS21940 PF01850 PIN domain APT55_RS21945 PF01694 Rhomboid family APT55_RS21950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT55_RS21955 PF00805 Pentapeptide repeats (8 copies) APT55_RS21960 PF00795 Carbon-nitrogen hydrolase APT55_RS21965 PF01062 APT55_RS21965 APT55_RS21985 PF01594 APT55_RS21985 APT55_RS21990 PF00583 Acetyltransferase (GNAT) family APT55_RS21995 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) APT55_RS22000 PF00892 EamA-like transporter family APT55_RS22015 PF13175 AAA ATPase domain APT55_RS22020 PF00118 TCP-1/cpn60 chaperonin family APT55_RS22025 PF00166 Chaperonin 10 Kd subunit APT55_RS22035 PF00427 Phycobilisome Linker polypeptide APT55_RS22040 PF00502 Phycobilisome protein APT55_RS22045 PF00502 Phycobilisome protein APT55_RS22050 PF00427 Phycobilisome Linker polypeptide APT55_RS22050 PF01383 CpcD/allophycocyanin linker domain APT55_RS22055 PF00427 Phycobilisome Linker polypeptide APT55_RS22055 PF01383 CpcD/allophycocyanin linker domain APT55_RS22060 PF05067 Manganese containing catalase APT55_RS22065 PF10002 APT55_RS22065 APT55_RS22070 PF13569 APT55_RS22070 APT55_RS22075 PF07728 AAA domain (dynein-related subfamily) APT55_RS22085 PF05762 VWA domain containing CoxE-like protein APT55_RS22095 PF01136 APT55_RS22095 APT55_RS22095 PF12392 APT55_RS22095 APT55_RS22100 PF02308 APT55_RS22100 APT55_RS22105 PF13231 APT55_RS22105 APT55_RS22115 PF07444 APT55_RS22115 APT55_RS22120 PF01370 NAD dependent epimerase/dehydratase family APT55_RS22125 PF00400 WD domain, G-beta repeat APT55_RS22125 PF07676 WD40-like Beta Propeller Repeat APT55_RS22125 PF13676 TIR domain APT55_RS22135 PF03150 Di-haem cytochrome c peroxidase APT55_RS22140 PF00395 S-layer homology domain APT55_RS22140 PF04966 Carbohydrate-selective porin, OprB family APT55_RS22145 PF00392 Bacterial regulatory proteins, gntR family APT55_RS22145 PF07729 FCD domain APT55_RS22150 PF09084 NMT1/THI5 like APT55_RS22155 PF00005 ABC transporter APT55_RS22160 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS22165 PF01169 APT55_RS22165 APT55_RS22170 PF13359 APT55_RS22170 APT55_RS22170 PF13613 APT55_RS22170 APT55_RS22175 PF04226 APT55_RS22175 APT55_RS22185 PF01565 FAD binding domain APT55_RS22185 PF08031 Berberine and berberine like APT55_RS22190 PF00072 Response regulator receiver domain APT55_RS22195 PF00072 Response regulator receiver domain APT55_RS22195 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS22195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS22195 PF13426 PAS domain APT55_RS22205 PF00891 O-methyltransferase APT55_RS22205 PF16864 APT55_RS22205 APT55_RS22215 PF00072 Response regulator receiver domain APT55_RS22215 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS22215 PF01590 GAF domain APT55_RS22215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS22215 PF08447 PAS fold APT55_RS22215 PF12860 APT55_RS22215 APT55_RS22215 PF13426 PAS domain APT55_RS22220 PF00072 Response regulator receiver domain APT55_RS22220 PF00486 Transcriptional regulatory protein, C terminal APT55_RS22220 PF00990 GGDEF domain APT55_RS22220 PF01627 Hpt domain APT55_RS22230 PF13359 APT55_RS22230 APT55_RS22235 PF00581 Rhodanese-like domain APT55_RS22260 PF01343 Peptidase family S49 APT55_RS22265 PF12849 PBP superfamily domain APT55_RS22265 PF16258 APT55_RS22265 APT55_RS22270 PF00535 Glycosyl transferase family 2 APT55_RS22270 PF13489 Methyltransferase domain APT55_RS22275 PF00535 Glycosyl transferase family 2 APT55_RS22280 PF01773 Na+ dependent nucleoside transporter N-terminus APT55_RS22280 PF07662 Na+ dependent nucleoside transporter C-terminus APT55_RS22290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS22290 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT55_RS22300 PF00149 Calcineurin-like phosphoesterase APT55_RS22305 PF01383 CpcD/allophycocyanin linker domain APT55_RS22310 PF00502 Phycobilisome protein APT55_RS22315 PF00502 Phycobilisome protein APT55_RS22330 PF00012 Hsp70 protein APT55_RS22340 PF00155 Aminotransferase class I and II APT55_RS22345 PF01809 APT55_RS22345 APT55_RS22350 PF01427 D-ala-D-ala dipeptidase APT55_RS22355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT55_RS22360 PF01225 Mur ligase family, catalytic domain APT55_RS22360 PF02875 Mur ligase family, glutamate ligase domain APT55_RS22360 PF08245 Mur ligase middle domain APT55_RS22365 PF05768 Glutaredoxin-like domain (DUF836) APT55_RS22370 PF00106 short chain dehydrogenase APT55_RS22375 PF00149 Calcineurin-like phosphoesterase APT55_RS22380 PF07589 APT55_RS22380 APT55_RS22385 PF08239 Bacterial SH3 domain APT55_RS22390 PF00072 Response regulator receiver domain APT55_RS22395 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS22395 PF13185 GAF domain APT55_RS22400 PF00072 Response regulator receiver domain APT55_RS22400 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS22400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS22400 PF02743 Cache domain APT55_RS22400 PF13426 PAS domain APT55_RS22410 PF00395 S-layer homology domain APT55_RS22410 PF04966 Carbohydrate-selective porin, OprB family APT55_RS22415 PF00155 Aminotransferase class I and II APT55_RS22420 PF04481 APT55_RS22420 APT55_RS22425 PF09685 APT55_RS22425 APT55_RS22435 PF01116 Fructose-bisphosphate aldolase class-II APT55_RS22440 PF00487 APT55_RS22440 APT55_RS22445 PF00440 Bacterial regulatory proteins, tetR family APT55_RS22450 PF01807 CHC2 zinc finger APT55_RS22450 PF08275 DNA primase catalytic core, N-terminal domain APT55_RS22450 PF10410 DnaB-helicase binding domain of primase APT55_RS22450 PF13155 Toprim-like APT55_RS22455 PF13023 HD domain APT55_RS22465 PF07927 YcfA-like protein APT55_RS22470 PF07883 Cupin domain APT55_RS22475 PF00656 Caspase domain APT55_RS22480 PF04389 Peptidase family M28 APT55_RS22485 PF03061 Thioesterase superfamily APT55_RS22490 PF00582 Universal stress protein family APT55_RS22495 PF13437 HlyD family secretion protein APT55_RS22495 PF13533 Biotin-lipoyl like APT55_RS22500 PF14279 APT55_RS22500 APT55_RS22505 PF01368 DHH family APT55_RS22510 PF00300 Histidine phosphatase superfamily (branch 1) APT55_RS22515 PF00805 Pentapeptide repeats (8 copies) APT55_RS22520 PF10069 APT55_RS22520 APT55_RS22520 PF13487 HD domain APT55_RS22520 PF17150 APT55_RS22520 APT55_RS22525 PF04055 Radical SAM superfamily APT55_RS22530 PF08865 APT55_RS22530 APT55_RS22535 PF13301 APT55_RS22535 APT55_RS22540 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS22540 PF00498 FHA domain APT55_RS22545 PF11318 APT55_RS22545 APT55_RS22550 PF02673 APT55_RS22550 APT55_RS22555 PF04459 APT55_RS22555 APT55_RS22575 PF00456 Transketolase, thiamine diphosphate binding domain APT55_RS22575 PF02779 Transketolase, pyrimidine binding domain APT55_RS22575 PF02780 Transketolase, C-terminal domain APT55_RS22585 PF00109 Beta-ketoacyl synthase, N-terminal domain APT55_RS22585 PF02801 Beta-ketoacyl synthase, C-terminal domain APT55_RS22590 PF00550 Phosphopantetheine attachment site APT55_RS22595 PF02754 APT55_RS22595 APT55_RS22600 PF00069 Protein kinase domain APT55_RS22605 PF12849 PBP superfamily domain APT55_RS22610 PF02702 Osmosensitive K+ channel His kinase sensor domain APT55_RS22615 PF03099 Biotin/lipoate A/B protein ligase family APT55_RS22620 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APT55_RS22620 PF16321 APT55_RS22620 APT55_RS22625 PF00009 Elongation factor Tu GTP binding domain APT55_RS22625 PF00679 Elongation factor G C-terminus APT55_RS22625 PF03764 Elongation factor G, domain IV APT55_RS22625 PF14492 Elongation Factor G, domain II APT55_RS22630 PF05598 APT55_RS22630 APT55_RS22635 PF00092 von Willebrand factor type A domain APT55_RS22650 PF04278 Tic22-like family APT55_RS22655 PF05175 Methyltransferase small domain APT55_RS22660 PF04248 Domain of unknown function (DUF427) APT55_RS22670 PF02503 Polyphosphate kinase middle domain APT55_RS22670 PF13089 Polyphosphate kinase N-terminal domain APT55_RS22670 PF13090 Polyphosphate kinase C-terminal domain APT55_RS22685 PF03692 APT55_RS22685 APT55_RS22690 PF01169 APT55_RS22690 APT55_RS22695 PF01169 APT55_RS22695 APT55_RS22700 PF13664 APT55_RS22700 APT55_RS22705 PF10989 APT55_RS22705 APT55_RS22715 PF00072 Response regulator receiver domain APT55_RS22720 PF00140 Sigma-70 factor, region 1 APT55_RS22720 PF04539 Sigma-70 region 3 APT55_RS22720 PF04542 Sigma-70 region 2 APT55_RS22720 PF04545 Sigma-70, region 4 APT55_RS22725 PF02517 CAAX protease self-immunity APT55_RS22730 PF11805 APT55_RS22730 APT55_RS22735 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS22745 PF00805 Pentapeptide repeats (8 copies) APT55_RS22750 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain APT55_RS22750 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APT55_RS22755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT55_RS22755 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT55_RS22760 PF01730 UreF APT55_RS22765 PF02814 UreE urease accessory protein, N-terminal domain APT55_RS22765 PF05194 UreE urease accessory protein, C-terminal domain APT55_RS22770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS22775 PF00035 Double-stranded RNA binding motif APT55_RS22775 PF00636 Ribonuclease III domain APT55_RS22800 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family APT55_RS22805 PF01467 Cytidylyltransferase APT55_RS22810 PF00293 NUDIX domain APT55_RS22815 PF01909 Nucleotidyltransferase domain APT55_RS22820 PF01934 Protein of unknown function DUF86 APT55_RS22825 PF01909 Nucleotidyltransferase domain APT55_RS22830 PF01934 Protein of unknown function DUF86 APT55_RS22845 PF00849 RNA pseudouridylate synthase APT55_RS22855 PF13420 Acetyltransferase (GNAT) domain APT55_RS22860 PF03091 CutA1 divalent ion tolerance protein APT55_RS22870 PF01648 4'-phosphopantetheinyl transferase superfamily APT55_RS22875 PF00128 Alpha amylase, catalytic domain APT55_RS22875 PF02806 Alpha amylase, C-terminal all-beta domain APT55_RS22875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT55_RS22880 PF00312 Ribosomal protein S15 APT55_RS22885 PF11947 APT55_RS22885 APT55_RS22890 PF00793 DAHP synthetase I family APT55_RS22895 PF11103 APT55_RS22895 APT55_RS22895 PF14261 APT55_RS22895 APT55_RS22900 PF09654 APT55_RS22900 APT55_RS22905 PF00196 Bacterial regulatory proteins, luxR family APT55_RS22915 PF00005 ABC transporter APT55_RS22915 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT55_RS22920 PF00005 ABC transporter APT55_RS22925 PF13458 Periplasmic binding protein APT55_RS22930 PF02653 APT55_RS22930 APT55_RS22935 PF02653 APT55_RS22935 APT55_RS22940 PF01145 SPFH domain / Band 7 family APT55_RS22950 PF04255 Protein of unknown function (DUF433) APT55_RS22960 PF00005 ABC transporter APT55_RS22960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT55_RS22965 PF00959 Phage lysozyme APT55_RS22970 PF00072 Response regulator receiver domain APT55_RS22970 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS22970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS22970 PF08447 PAS fold APT55_RS22970 PF08448 PAS fold APT55_RS22970 PF13188 PAS domain APT55_RS22975 PF12697 Alpha/beta hydrolase family APT55_RS22980 PF00459 Inositol monophosphatase family APT55_RS22985 PF04892 APT55_RS22985 APT55_RS22990 PF08421 Putative zinc binding domain APT55_RS22990 PF08484 C-methyltransferase C-terminal domain APT55_RS22990 PF13489 Methyltransferase domain APT55_RS22995 PF01370 NAD dependent epimerase/dehydratase family APT55_RS23000 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT55_RS23000 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT55_RS23000 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT55_RS23005 PF05721 Phytanoyl-CoA dioxygenase (PhyH) APT55_RS23010 PF09940 Domain of unknown function (DUF2172) APT55_RS23010 PF16221 APT55_RS23010 APT55_RS23010 PF16254 APT55_RS23010 APT55_RS23015 PF00483 Nucleotidyl transferase APT55_RS23020 PF02585 GlcNAc-PI de-N-acetylase APT55_RS23025 PF01966 HD domain APT55_RS23025 PF02541 Ppx/GppA phosphatase family APT55_RS23030 PF01040 UbiA prenyltransferase family APT55_RS23045 PF04539 Sigma-70 region 3 APT55_RS23045 PF04542 Sigma-70 region 2 APT55_RS23045 PF04545 Sigma-70, region 4 APT55_RS23050 PF01716 Manganese-stabilising protein / photosystem II polypeptide APT55_RS23060 PF05151 Photosystem II reaction centre M protein (PsbM) APT55_RS23065 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS23070 PF00421 Photosystem II protein APT55_RS23075 PF01405 Photosystem II reaction centre T protein APT55_RS23080 PF00583 Acetyltransferase (GNAT) family APT55_RS23085 PF01384 APT55_RS23085 APT55_RS23090 PF00892 EamA-like transporter family APT55_RS23100 PF11832 APT55_RS23100 APT55_RS23105 PF01595 APT55_RS23105 APT55_RS23105 PF03471 Transporter associated domain APT55_RS23110 PF04909 Amidohydrolase APT55_RS23115 PF06127 APT55_RS23115 APT55_RS23130 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS23135 PF02350 UDP-N-acetylglucosamine 2-epimerase APT55_RS23145 PF02985 HEAT repeat APT55_RS23145 PF13646 HEAT repeats APT55_RS23150 PF00270 DEAD/DEAH box helicase APT55_RS23150 PF00271 Helicase conserved C-terminal domain APT55_RS23150 PF16124 APT55_RS23150 APT55_RS23155 PF00106 short chain dehydrogenase APT55_RS23165 PF01965 DJ-1/PfpI family APT55_RS23165 PF09537 Domain of unknown function (DUF2383) APT55_RS23170 PF03364 Polyketide cyclase / dehydrase and lipid transport APT55_RS23175 PF00107 Zinc-binding dehydrogenase APT55_RS23175 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS23175 PF13823 Alcohol dehydrogenase GroES-associated APT55_RS23185 PF00107 Zinc-binding dehydrogenase APT55_RS23185 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS23185 PF13823 Alcohol dehydrogenase GroES-associated APT55_RS23190 PF00484 Carbonic anhydrase APT55_RS23195 PF01170 Putative RNA methylase family UPF0020 APT55_RS23195 PF02926 THUMP domain APT55_RS23200 PF03033 Glycosyltransferase family 28 N-terminal domain APT55_RS23200 PF04101 Glycosyltransferase family 28 C-terminal domain APT55_RS23205 PF02616 ScpA/B protein APT55_RS23210 PF06305 APT55_RS23210 APT55_RS23215 PF01594 APT55_RS23215 APT55_RS23220 PF11353 APT55_RS23220 APT55_RS23240 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT55_RS23245 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APT55_RS23250 PF13237 4Fe-4S dicluster domain APT55_RS23255 PF00146 NADH dehydrogenase APT55_RS23260 PF00285 Citrate synthase APT55_RS23270 PF07969 Amidohydrolase family APT55_RS23280 PF01979 Amidohydrolase family APT55_RS23285 PF00534 Glycosyl transferases group 1 APT55_RS23285 PF08323 Starch synthase catalytic domain APT55_RS23290 PF08814 XisH protein APT55_RS23295 PF08869 XisI protein APT55_RS23300 PF01850 PIN domain APT55_RS23315 PF09585 Conserved hypothetical protein (Lin0512_fam) APT55_RS23320 PF01935 Domain of unknown function DUF87 APT55_RS23320 PF09378 HAS barrel domain APT55_RS23330 PF01850 PIN domain APT55_RS23340 PF13410 Glutathione S-transferase, C-terminal domain APT55_RS23340 PF13417 Glutathione S-transferase, N-terminal domain APT55_RS23345 PF02463 RecF/RecN/SMC N terminal domain APT55_RS23350 PF00067 Cytochrome P450 APT55_RS23355 PF01724 Domain of unknown function DUF29 APT55_RS23360 PF00122 E1-E2 ATPase APT55_RS23360 PF00689 Cation transporting ATPase, C-terminus APT55_RS23360 PF00690 Cation transporter/ATPase, N-terminus APT55_RS23360 PF00702 haloacid dehalogenase-like hydrolase APT55_RS23365 PF13191 AAA ATPase domain APT55_RS23370 PF01381 Helix-turn-helix APT55_RS23375 PF13401 AAA domain APT55_RS23380 PF13191 AAA ATPase domain APT55_RS23380 PF13428 Tetratricopeptide repeat APT55_RS23385 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS23400 PF03713 Domain of unknown function (DUF305) APT55_RS23405 PF16576 APT55_RS23405 APT55_RS23410 PF00873 AcrB/AcrD/AcrF family APT55_RS23420 PF00122 E1-E2 ATPase APT55_RS23420 PF00702 haloacid dehalogenase-like hydrolase APT55_RS23425 PF03713 Domain of unknown function (DUF305) APT55_RS23430 PF00072 Response regulator receiver domain APT55_RS23430 PF00486 Transcriptional regulatory protein, C terminal APT55_RS23435 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS23435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS23440 PF13527 Acetyltransferase (GNAT) domain APT55_RS23450 PF00391 PEP-utilising enzyme, mobile domain APT55_RS23450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT55_RS23450 PF02896 PEP-utilising enzyme, TIM barrel domain APT55_RS23455 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS23465 PF01743 Poly A polymerase head domain APT55_RS23465 PF12627 Probable RNA and SrmB- binding site of polymerase A APT55_RS23465 PF13735 tRNA nucleotidyltransferase domain 2 putative APT55_RS23470 PF10718 APT55_RS23470 APT55_RS23475 PF13181 Tetratricopeptide repeat APT55_RS23475 PF13414 TPR repeat APT55_RS23475 PF13432 Tetratricopeptide repeat APT55_RS23480 PF00534 Glycosyl transferases group 1 APT55_RS23480 PF13439 Glycosyltransferase Family 4 APT55_RS23485 PF10719 APT55_RS23485 APT55_RS23490 PF04932 APT55_RS23490 APT55_RS23495 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS23495 PF01590 GAF domain APT55_RS23500 PF05419 GUN4-like APT55_RS23500 PF16416 APT55_RS23500 APT55_RS23505 PF00072 Response regulator receiver domain APT55_RS23505 PF00196 Bacterial regulatory proteins, luxR family APT55_RS23510 PF00180 Isocitrate/isopropylmalate dehydrogenase APT55_RS23520 PF00072 Response regulator receiver domain APT55_RS23525 PF00072 Response regulator receiver domain APT55_RS23525 PF00486 Transcriptional regulatory protein, C terminal APT55_RS23525 PF01627 Hpt domain APT55_RS23535 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS23535 PF01434 Peptidase family M41 APT55_RS23535 PF06480 FtsH Extracellular APT55_RS23540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT55_RS23545 PF00571 CBS domain APT55_RS23550 PF13646 HEAT repeats APT55_RS23555 PF07589 APT55_RS23555 APT55_RS23560 PF01263 Aldose 1-epimerase APT55_RS23565 PF09587 Bacterial capsule synthesis protein PGA_cap APT55_RS23570 PF00805 Pentapeptide repeats (8 copies) APT55_RS23580 PF07883 Cupin domain APT55_RS23585 PF00069 Protein kinase domain APT55_RS23585 PF07719 Tetratricopeptide repeat APT55_RS23585 PF13432 Tetratricopeptide repeat APT55_RS23600 PF00534 Glycosyl transferases group 1 APT55_RS23600 PF13439 Glycosyltransferase Family 4 APT55_RS23605 PF11165 APT55_RS23605 APT55_RS23620 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus APT55_RS23630 PF00731 AIR carboxylase APT55_RS23635 PF01040 UbiA prenyltransferase family APT55_RS23640 PF13378 Enolase C-terminal domain-like APT55_RS23645 PF00501 AMP-binding enzyme APT55_RS23645 PF13193 AMP-binding enzyme C-terminal domain APT55_RS23660 PF00171 Aldehyde dehydrogenase family APT55_RS23665 PF00498 FHA domain APT55_RS23675 PF02463 RecF/RecN/SMC N terminal domain APT55_RS23675 PF06470 SMC proteins Flexible Hinge Domain APT55_RS23680 PF05239 PRC-barrel domain APT55_RS23690 PF10229 APT55_RS23690 APT55_RS23695 PF01555 DNA methylase APT55_RS23710 PF03652 Uncharacterised protein family (UPF0081) APT55_RS23715 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS23715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS23720 PF11378 APT55_RS23720 APT55_RS23725 PF13239 APT55_RS23725 APT55_RS23730 PF00591 Glycosyl transferase family, a/b domain APT55_RS23730 PF02885 Glycosyl transferase family, helical bundle domain APT55_RS23735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS23735 PF03466 LysR substrate binding domain APT55_RS23740 PF00929 Exonuclease APT55_RS23745 PF00270 DEAD/DEAH box helicase APT55_RS23745 PF00271 Helicase conserved C-terminal domain APT55_RS23750 PF00919 Uncharacterized protein family UPF0004 APT55_RS23750 PF04055 Radical SAM superfamily APT55_RS23755 PF13437 HlyD family secretion protein APT55_RS23755 PF13533 Biotin-lipoyl like APT55_RS23770 PF04402 Protein of unknown function (DUF541) APT55_RS23775 PF05728 Uncharacterised protein family (UPF0227) APT55_RS23780 PF14159 APT55_RS23780 APT55_RS23795 PF06055 APT55_RS23795 APT55_RS23800 PF01479 S4 domain APT55_RS23800 PF01728 FtsJ-like methyltransferase APT55_RS23805 PF01145 SPFH domain / Band 7 family APT55_RS23810 PF09367 CpeS-like protein APT55_RS23815 PF00005 ABC transporter APT55_RS23820 PF01061 APT55_RS23820 APT55_RS23825 PF10047 APT55_RS23825 APT55_RS23830 PF02452 PemK-like protein APT55_RS23835 PF03819 MazG nucleotide pyrophosphohydrolase domain APT55_RS23840 PF09988 APT55_RS23840 APT55_RS23855 PF00596 Class II Aldolase and Adducin N-terminal domain APT55_RS23855 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS23860 PF00202 Aminotransferase class-III APT55_RS23865 PF00830 Ribosomal L28 family APT55_RS23880 PF13544 APT55_RS23880 APT55_RS23885 PF13544 APT55_RS23885 APT55_RS23890 PF13633 Prokaryotic N-terminal methylation site APT55_RS23895 PF00128 Alpha amylase, catalytic domain APT55_RS23895 PF02806 Alpha amylase, C-terminal all-beta domain APT55_RS23895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT55_RS23900 PF04839 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) APT55_RS23905 PF00702 haloacid dehalogenase-like hydrolase APT55_RS23920 PF13391 APT55_RS23920 APT55_RS23925 PF14249 APT55_RS23925 APT55_RS23935 PF05982 APT55_RS23935 APT55_RS23945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APT55_RS23950 PF00561 alpha/beta hydrolase fold APT55_RS23960 PF04474 APT55_RS23960 APT55_RS23970 PF00202 Aminotransferase class-III APT55_RS23975 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT55_RS23975 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT55_RS23980 PF11237 APT55_RS23980 APT55_RS23985 PF14233 APT55_RS23985 APT55_RS23990 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT55_RS23995 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS23995 PF01434 Peptidase family M41 APT55_RS23995 PF06480 FtsH Extracellular APT55_RS24000 PF09351 Domain of unknown function (DUF1993) APT55_RS24005 PF13767 APT55_RS24005 APT55_RS24010 PF06144 DNA polymerase III, delta subunit APT55_RS24025 PF07927 YcfA-like protein APT55_RS24030 PF15919 APT55_RS24030 APT55_RS24035 PF13412 Winged helix-turn-helix DNA-binding APT55_RS24040 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain APT55_RS24045 PF01458 Uncharacterized protein family (UPF0051) APT55_RS24050 PF00005 ABC transporter APT55_RS24055 PF01458 Uncharacterized protein family (UPF0051) APT55_RS24060 PF00266 Aminotransferase class-V APT55_RS24065 PF11832 APT55_RS24065 APT55_RS24075 PF09907 APT55_RS24075 APT55_RS24080 PF00155 Aminotransferase class I and II APT55_RS24085 PF01795 MraW methylase family APT55_RS24090 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT55_RS24100 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase APT55_RS24105 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel APT55_RS24110 PF00586 AIR synthase related protein, N-terminal domain APT55_RS24110 PF02769 AIR synthase related protein, C-terminal domain APT55_RS24115 PF00398 Ribosomal RNA adenine dimethylase APT55_RS24125 PF00288 GHMP kinases N terminal domain APT55_RS24125 PF08544 GHMP kinases C terminal APT55_RS24130 PF11848 APT55_RS24130 APT55_RS24135 PF03683 APT55_RS24135 APT55_RS24145 PF05729 NACHT domain APT55_RS24160 PF02355 Protein export membrane protein APT55_RS24160 PF07549 SecD/SecF GG Motif APT55_RS24165 PF02355 Protein export membrane protein APT55_RS24165 PF07549 SecD/SecF GG Motif APT55_RS24180 PF02779 Transketolase, pyrimidine binding domain APT55_RS24180 PF02780 Transketolase, C-terminal domain APT55_RS24185 PF00266 Aminotransferase class-V APT55_RS24190 PF14251 APT55_RS24190 APT55_RS24195 PF04339 APT55_RS24195 APT55_RS24200 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS24200 PF00672 HAMP domain APT55_RS24200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS24205 PF09992 Predicted periplasmic protein (DUF2233) APT55_RS24210 PF01966 HD domain APT55_RS24210 PF07697 APT55_RS24210 APT55_RS24210 PF07698 APT55_RS24210 APT55_RS24215 PF13545 Crp-like helix-turn-helix domain APT55_RS24220 PF08241 Methyltransferase domain APT55_RS24230 PF00133 tRNA synthetases class I (I, L, M and V) APT55_RS24230 PF08264 Anticodon-binding domain of tRNA APT55_RS24230 PF09334 tRNA synthetases class I (M) APT55_RS24235 PF01936 NYN domain APT55_RS24240 PF06835 Lipopolysaccharide-assembly, LptC-related APT55_RS24245 PF00223 Photosystem I psaA/psaB protein APT55_RS24250 PF00989 PAS fold APT55_RS24250 PF13545 Crp-like helix-turn-helix domain APT55_RS24255 PF13614 AAA domain APT55_RS24265 PF09383 NIL domain APT55_RS24265 PF14697 4Fe-4S dicluster domain APT55_RS24275 PF00072 Response regulator receiver domain APT55_RS24275 PF07228 Stage II sporulation protein E (SpoIIE) APT55_RS24280 PF01740 STAS domain APT55_RS24285 PF01740 STAS domain APT55_RS24285 PF02397 APT55_RS24285 APT55_RS24290 PF13581 Histidine kinase-like ATPase domain APT55_RS24295 PF00694 Aconitase C-terminal domain APT55_RS24300 PF00117 Glutamine amidotransferase class-I APT55_RS24300 PF06418 CTP synthase N-terminus APT55_RS24305 PF01520 N-acetylmuramoyl-L-alanine amidase APT55_RS24315 PF01368 DHH family APT55_RS24315 PF02272 DHHA1 domain APT55_RS24345 PF00873 AcrB/AcrD/AcrF family APT55_RS24345 PF03176 MMPL family APT55_RS24350 PF01370 NAD dependent epimerase/dehydratase family APT55_RS24355 PF04055 Radical SAM superfamily APT55_RS24355 PF11946 APT55_RS24355 APT55_RS24360 PF00069 Protein kinase domain APT55_RS24360 PF12796 Ankyrin repeats (3 copies) APT55_RS24365 PF00069 Protein kinase domain APT55_RS24365 PF00515 Tetratricopeptide repeat APT55_RS24370 PF00082 Subtilase family APT55_RS24375 PF00535 Glycosyl transferase family 2 APT55_RS24385 PF13231 APT55_RS24385 APT55_RS24390 PF13524 Glycosyl transferases group 1 APT55_RS24395 PF00535 Glycosyl transferase family 2 APT55_RS24400 PF01501 Glycosyl transferase family 8 APT55_RS24405 PF05050 Methyltransferase FkbM domain APT55_RS24410 PF00005 ABC transporter APT55_RS24410 PF14524 Wzt C-terminal domain APT55_RS24415 PF01061 APT55_RS24415 APT55_RS24420 PF00005 ABC transporter APT55_RS24425 PF00072 Response regulator receiver domain APT55_RS24425 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS24425 PF00672 HAMP domain APT55_RS24425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS24425 PF05227 CHASE3 domain APT55_RS24425 PF13185 GAF domain APT55_RS24430 PF05860 haemagglutination activity domain APT55_RS24435 PF01641 SelR domain APT55_RS24440 PF03069 Acetamidase/Formamidase family APT55_RS24445 PF00072 Response regulator receiver domain APT55_RS24445 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS24445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS24450 PF00072 Response regulator receiver domain APT55_RS24450 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS24450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS24450 PF05231 APT55_RS24450 APT55_RS24455 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) APT55_RS24460 PF00436 Single-strand binding protein family APT55_RS24465 PF00483 Nucleotidyl transferase APT55_RS24465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT55_RS24465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT55_RS24465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT55_RS24465 PF14602 Hexapeptide repeat of succinyl-transferase APT55_RS24475 PF08241 Methyltransferase domain APT55_RS24480 PF00294 pfkB family carbohydrate kinase APT55_RS24485 PF00072 Response regulator receiver domain APT55_RS24490 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT55_RS24490 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT55_RS24495 PF10923 APT55_RS24495 APT55_RS24500 PF00227 Proteasome subunit APT55_RS24515 PF05685 Putative restriction endonuclease APT55_RS24520 PF00931 NB-ARC domain APT55_RS24520 PF13176 Tetratricopeptide repeat APT55_RS24520 PF13374 Tetratricopeptide repeat APT55_RS24520 PF13424 Tetratricopeptide repeat APT55_RS24520 PF13676 TIR domain APT55_RS24525 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APT55_RS24530 PF05016 Plasmid stabilisation system protein APT55_RS24535 PF15919 APT55_RS24535 APT55_RS24540 PF07927 YcfA-like protein APT55_RS24545 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT55_RS24545 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS24555 PF00300 Histidine phosphatase superfamily (branch 1) APT55_RS24560 PF10664 APT55_RS24560 APT55_RS24565 PF05685 Putative restriction endonuclease APT55_RS24570 PF01347 Lipoprotein amino terminal region APT55_RS24570 PF13646 HEAT repeats APT55_RS24585 PF00905 Penicillin binding protein transpeptidase domain APT55_RS24585 PF03717 Penicillin-binding Protein dimerisation domain APT55_RS24595 PF01590 GAF domain APT55_RS24595 PF13492 GAF domain APT55_RS24600 PF01180 Dihydroorotate dehydrogenase APT55_RS24605 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains APT55_RS24610 PF00437 Type II/IV secretion system protein APT55_RS24615 PF00535 Glycosyl transferase family 2 APT55_RS24625 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APT55_RS24630 PF05685 Putative restriction endonuclease APT55_RS24635 PF01507 Phosphoadenosine phosphosulfate reductase family APT55_RS24640 PF16576 APT55_RS24640 APT55_RS24645 PF00873 AcrB/AcrD/AcrF family APT55_RS24650 PF00196 Bacterial regulatory proteins, luxR family APT55_RS24650 PF13185 GAF domain APT55_RS24655 PF00449 Urease alpha-subunit, N-terminal domain APT55_RS24655 PF01979 Amidohydrolase family APT55_RS24665 PF02529 Cytochrome B6-F complex subunit 5 APT55_RS24670 PF07099 APT55_RS24670 APT55_RS24680 PF00682 HMGL-like APT55_RS24680 PF08502 LeuA allosteric (dimerisation) domain APT55_RS24685 PF01936 NYN domain APT55_RS24690 PF00069 Protein kinase domain APT55_RS24690 PF05226 APT55_RS24690 APT55_RS24695 PF00355 Rieske [2Fe-2S] domain APT55_RS24705 PF00297 Ribosomal protein L3 APT55_RS24710 PF00573 Ribosomal protein L4/L1 family APT55_RS24715 PF00276 Ribosomal protein L23 APT55_RS24720 PF00181 Ribosomal Proteins L2, RNA binding domain APT55_RS24720 PF03947 Ribosomal Proteins L2, C-terminal domain APT55_RS24725 PF00203 Ribosomal protein S19 APT55_RS24730 PF00237 Ribosomal protein L22p/L17e APT55_RS24735 PF00189 Ribosomal protein S3, C-terminal domain APT55_RS24735 PF07650 KH domain APT55_RS24740 PF00252 Ribosomal protein L16p/L10e APT55_RS24745 PF00831 Ribosomal L29 protein APT55_RS24750 PF00366 Ribosomal protein S17 APT55_RS24755 PF00238 Ribosomal protein L14p/L23e APT55_RS24760 PF00467 KOW motif APT55_RS24760 PF17136 APT55_RS24760 APT55_RS24765 PF00281 Ribosomal protein L5 APT55_RS24765 PF00673 ribosomal L5P family C-terminus APT55_RS24770 PF00410 Ribosomal protein S8 APT55_RS24775 PF00347 Ribosomal protein L6 APT55_RS24780 PF00861 Ribosomal L18p/L5e family APT55_RS24785 PF00333 Ribosomal protein S5, N-terminal domain APT55_RS24785 PF03719 Ribosomal protein S5, C-terminal domain APT55_RS24790 PF00828 Ribosomal protein L18e/L15 APT55_RS24800 PF05277 APT55_RS24800 APT55_RS24810 PF01850 PIN domain APT55_RS24815 PF05016 Plasmid stabilisation system protein APT55_RS24820 PF09720 APT55_RS24820 APT55_RS24825 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APT55_RS24840 PF01844 HNH endonuclease APT55_RS24850 PF09084 NMT1/THI5 like APT55_RS24855 PF05013 N-formylglutamate amidohydrolase APT55_RS24860 PF05731 TROVE domain APT55_RS24865 PF05729 NACHT domain APT55_RS24865 PF13646 HEAT repeats APT55_RS24875 PF13778 APT55_RS24875 APT55_RS24880 PF12146 Putative lysophospholipase APT55_RS24885 PF12770 APT55_RS24885 APT55_RS24885 PF13181 Tetratricopeptide repeat APT55_RS24885 PF13424 Tetratricopeptide repeat APT55_RS24890 PF16734 APT55_RS24890 APT55_RS24900 PF08239 Bacterial SH3 domain APT55_RS24900 PF13457 SH3-like domain APT55_RS24910 PF13181 Tetratricopeptide repeat APT55_RS24910 PF13424 Tetratricopeptide repeat APT55_RS24935 PF01243 Pyridoxamine 5'-phosphate oxidase APT55_RS24940 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS24955 PF08852 APT55_RS24955 APT55_RS24965 PF00656 Caspase domain APT55_RS24965 PF14326 APT55_RS24965 APT55_RS24975 PF05226 APT55_RS24975 APT55_RS24975 PF12770 APT55_RS24975 APT55_RS24985 PF08240 Alcohol dehydrogenase GroES-like domain APT55_RS24985 PF13602 Zinc-binding dehydrogenase APT55_RS24995 PF00593 TonB dependent receptor APT55_RS24995 PF07715 TonB-dependent Receptor Plug Domain APT55_RS25000 PF01497 Periplasmic binding protein APT55_RS25005 PF00005 ABC transporter APT55_RS25010 PF01032 FecCD transport family APT55_RS25015 PF00421 Photosystem II protein APT55_RS25025 PF13545 Crp-like helix-turn-helix domain APT55_RS25030 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS25035 PF01618 APT55_RS25035 APT55_RS25040 PF03544 Gram-negative bacterial TonB protein C-terminal APT55_RS25045 PF01032 FecCD transport family APT55_RS25050 PF01497 Periplasmic binding protein APT55_RS25055 PF12833 Helix-turn-helix domain APT55_RS25060 PF00593 TonB dependent receptor APT55_RS25060 PF07715 TonB-dependent Receptor Plug Domain APT55_RS25060 PF11741 AMIN domain APT55_RS25065 PF00005 ABC transporter APT55_RS25070 PF00005 ABC transporter APT55_RS25070 PF00664 ABC transporter transmembrane region APT55_RS25075 PF12833 Helix-turn-helix domain APT55_RS25080 PF00593 TonB dependent receptor APT55_RS25080 PF07715 TonB-dependent Receptor Plug Domain APT55_RS25080 PF11741 AMIN domain APT55_RS25085 PF01497 Periplasmic binding protein APT55_RS25090 PF07690 Major Facilitator Superfamily APT55_RS25095 PF01497 Periplasmic binding protein APT55_RS25100 PF00593 TonB dependent receptor APT55_RS25100 PF07715 TonB-dependent Receptor Plug Domain APT55_RS25105 PF12833 Helix-turn-helix domain APT55_RS25110 PF00005 ABC transporter APT55_RS25110 PF00664 ABC transporter transmembrane region APT55_RS25115 PF07845 APT55_RS25115 APT55_RS25120 PF01497 Periplasmic binding protein APT55_RS25125 PF01032 FecCD transport family APT55_RS25130 PF01032 FecCD transport family APT55_RS25165 PF00440 Bacterial regulatory proteins, tetR family APT55_RS25170 PF02798 Glutathione S-transferase, N-terminal domain APT55_RS25170 PF13410 Glutathione S-transferase, C-terminal domain APT55_RS25175 PF01243 Pyridoxamine 5'-phosphate oxidase APT55_RS25180 PF02656 APT55_RS25180 APT55_RS25185 PF00400 WD domain, G-beta repeat APT55_RS25185 PF14516 APT55_RS25185 APT55_RS25190 PF14516 APT55_RS25190 APT55_RS25195 PF07705 CARDB APT55_RS25200 PF00144 Beta-lactamase APT55_RS25205 PF13358 DDE superfamily endonuclease APT55_RS25230 PF14681 Uracil phosphoribosyltransferase APT55_RS25235 PF07958 APT55_RS25235 APT55_RS25240 PF00925 GTP cyclohydrolase II APT55_RS25240 PF12471 APT55_RS25240 APT55_RS25255 PF00805 Pentapeptide repeats (8 copies) APT55_RS25255 PF16734 APT55_RS25255 APT55_RS25260 PF13673 Acetyltransferase (GNAT) domain APT55_RS25265 PF13231 APT55_RS25265 APT55_RS25270 PF04485 Phycobilisome degradation protein nblA APT55_RS25280 PF01555 DNA methylase APT55_RS25285 PF02657 Fe-S metabolism associated domain APT55_RS25290 PF00188 Cysteine-rich secretory protein family APT55_RS25295 PF00476 DNA polymerase family A APT55_RS25295 PF01367 5'-3' exonuclease, C-terminal SAM fold APT55_RS25295 PF01612 3'-5' exonuclease APT55_RS25295 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APT55_RS25305 PF00072 Response regulator receiver domain APT55_RS25310 PF00072 Response regulator receiver domain APT55_RS25315 PF01584 CheW-like domain APT55_RS25320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain APT55_RS25320 PF00672 HAMP domain APT55_RS25320 PF01590 GAF domain APT55_RS25320 PF02743 Cache domain APT55_RS25325 PF00072 Response regulator receiver domain APT55_RS25325 PF01584 CheW-like domain APT55_RS25325 PF01627 Hpt domain APT55_RS25325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS25325 PF02895 Signal transducing histidine kinase, homodimeric domain APT55_RS25330 PF01547 Bacterial extracellular solute-binding protein APT55_RS25335 PF00462 Glutaredoxin APT55_RS25335 PF08534 Redoxin APT55_RS25340 PF04357 APT55_RS25340 APT55_RS25340 PF13116 APT55_RS25340 APT55_RS25345 PF00085 Thioredoxin APT55_RS25350 PF07862 APT55_RS25350 APT55_RS25355 PF06055 APT55_RS25355 APT55_RS25360 PF00395 S-layer homology domain APT55_RS25365 PF00571 CBS domain APT55_RS25365 PF01595 APT55_RS25365 APT55_RS25365 PF03471 Transporter associated domain APT55_RS25370 PF04828 Glutathione-dependent formaldehyde-activating enzyme APT55_RS25375 PF00459 Inositol monophosphatase family APT55_RS25380 PF01949 Protein of unknown function DUF99 APT55_RS25385 PF14261 APT55_RS25385 APT55_RS25395 PF01593 Flavin containing amine oxidoreductase APT55_RS25400 PF00326 Prolyl oligopeptidase family APT55_RS25400 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain APT55_RS25405 PF00069 Protein kinase domain APT55_RS25410 PF05145 APT55_RS25410 APT55_RS25415 PF13379 NMT1-like family APT55_RS25420 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS25425 PF00005 ABC transporter APT55_RS25430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT55_RS25430 PF03466 LysR substrate binding domain APT55_RS25430 PF13379 NMT1-like family APT55_RS25440 PF00890 FAD binding domain APT55_RS25440 PF02910 Fumarate reductase flavoprotein C-term APT55_RS25445 PF13187 4Fe-4S dicluster domain APT55_RS25450 PF03130 PBS lyase HEAT-like repeat APT55_RS25450 PF13646 HEAT repeats APT55_RS25455 PF01883 Domain of unknown function DUF59 APT55_RS25455 PF10609 ParA/MinD ATPase like APT55_RS25460 PF03601 APT55_RS25460 APT55_RS25465 PF01925 APT55_RS25465 APT55_RS25470 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS25470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS25475 PF14107 APT55_RS25475 APT55_RS25485 PF01229 Glycosyl hydrolases family 39 APT55_RS25490 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS25490 PF02706 Chain length determinant protein APT55_RS25490 PF13807 APT55_RS25490 APT55_RS25495 PF04932 APT55_RS25495 APT55_RS25500 PF04616 Glycosyl hydrolases family 43 APT55_RS25505 PF00534 Glycosyl transferases group 1 APT55_RS25505 PF13439 Glycosyltransferase Family 4 APT55_RS25510 PF13439 Glycosyltransferase Family 4 APT55_RS25510 PF13692 Glycosyl transferases group 1 APT55_RS25515 PF00534 Glycosyl transferases group 1 APT55_RS25525 PF13440 APT55_RS25525 APT55_RS25530 PF00535 Glycosyl transferase family 2 APT55_RS25535 PF03808 APT55_RS25535 APT55_RS25540 PF02485 Core-2/I-Branching enzyme APT55_RS25545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT55_RS25545 PF02403 Seryl-tRNA synthetase N-terminal domain APT55_RS25550 PF01612 3'-5' exonuclease APT55_RS25555 PF00188 Cysteine-rich secretory protein family APT55_RS25560 PF13231 APT55_RS25560 APT55_RS25565 PF13231 APT55_RS25565 APT55_RS25570 PF00437 Type II/IV secretion system protein APT55_RS25585 PF04551 GcpE protein APT55_RS25595 PF01841 Transglutaminase-like superfamily APT55_RS25595 PF08379 APT55_RS25595 APT55_RS25610 PF13580 SIS domain APT55_RS25620 PF07690 Major Facilitator Superfamily APT55_RS25625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT55_RS25625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT55_RS25625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT55_RS25625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT55_RS25635 PF10369 Small subunit of acetolactate synthase APT55_RS25635 PF13710 ACT domain APT55_RS25640 PF03160 Calx-beta domain APT55_RS25640 PF07691 PA14 domain APT55_RS25640 PF07995 Glucose / Sorbosone dehydrogenase APT55_RS25640 PF14252 APT55_RS25640 APT55_RS25645 PF00488 MutS domain V APT55_RS25645 PF01713 Smr domain APT55_RS25650 PF00072 Response regulator receiver domain APT55_RS25650 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS25650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS25655 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS25655 PF00672 HAMP domain APT55_RS25655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS25655 PF02743 Cache domain APT55_RS25655 PF08448 PAS fold APT55_RS25660 PF00128 Alpha amylase, catalytic domain APT55_RS25660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT55_RS25660 PF11941 Domain of unknown function (DUF3459) APT55_RS25665 PF00128 Alpha amylase, catalytic domain APT55_RS25670 PF03099 Biotin/lipoate A/B protein ligase family APT55_RS25675 PF00180 Isocitrate/isopropylmalate dehydrogenase APT55_RS25680 PF01297 Periplasmic solute binding protein family APT55_RS25690 PF02654 APT55_RS25690 APT55_RS25695 PF00520 Ion transport protein APT55_RS25700 PF00483 Nucleotidyl transferase APT55_RS25710 PF12838 4Fe-4S dicluster domain APT55_RS25715 PF00005 ABC transporter APT55_RS25720 PF00730 HhH-GPD superfamily base excision DNA repair protein APT55_RS25720 PF10576 Iron-sulfur binding domain of endonuclease III APT55_RS25720 PF14815 NUDIX domain APT55_RS25725 PF05542 APT55_RS25725 APT55_RS25730 PF11780 APT55_RS25730 APT55_RS25735 PF01471 Putative peptidoglycan binding domain APT55_RS25740 PF00501 AMP-binding enzyme APT55_RS25740 PF00550 Phosphopantetheine attachment site APT55_RS25740 PF00668 Condensation domain APT55_RS25740 PF00975 Thioesterase domain APT55_RS25740 PF13193 AMP-binding enzyme C-terminal domain APT55_RS25750 PF00069 Protein kinase domain APT55_RS25755 PF12705 PD-(D/E)XK nuclease superfamily APT55_RS25760 PF10929 APT55_RS25760 APT55_RS25770 PF03693 Uncharacterised protein family (UPF0156) APT55_RS25775 PF05016 Plasmid stabilisation system protein APT55_RS25780 PF00440 Bacterial regulatory proteins, tetR family APT55_RS25790 PF10674 Protein of unknown function (DUF2488) APT55_RS25795 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APT55_RS25800 PF00033 Cytochrome b(N-terminal)/b6/petB APT55_RS25810 PF00343 Carbohydrate phosphorylase APT55_RS25810 PF11897 APT55_RS25810 APT55_RS25815 PF00487 APT55_RS25815 APT55_RS25825 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APT55_RS25840 PF00270 DEAD/DEAH box helicase APT55_RS25840 PF00271 Helicase conserved C-terminal domain APT55_RS25840 PF16124 APT55_RS25840 APT55_RS25855 PF00005 ABC transporter APT55_RS25865 PF02225 PA domain APT55_RS25865 PF04389 Peptidase family M28 APT55_RS25870 PF02075 Crossover junction endodeoxyribonuclease RuvC APT55_RS25875 PF00730 HhH-GPD superfamily base excision DNA repair protein APT55_RS25880 PF01427 D-ala-D-ala dipeptidase APT55_RS25885 PF03054 tRNA methyl transferase APT55_RS25895 PF00696 Amino acid kinase family APT55_RS25895 PF01842 ACT domain APT55_RS25895 PF13840 ACT domain APT55_RS25900 PF12697 Alpha/beta hydrolase family APT55_RS25915 PF10025 Uncharacterized conserved protein (DUF2267) APT55_RS25925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS25930 PF01940 APT55_RS25930 APT55_RS25935 PF00535 Glycosyl transferase family 2 APT55_RS25940 PF13243 Prenyltransferase-like APT55_RS25940 PF13249 Prenyltransferase-like APT55_RS25945 PF01050 Mannose-6-phosphate isomerase APT55_RS25950 PF03062 APT55_RS25950 APT55_RS25960 PF09685 APT55_RS25960 APT55_RS25965 PF00009 Elongation factor Tu GTP binding domain APT55_RS25965 PF16658 APT55_RS25965 APT55_RS25970 PF01435 Peptidase family M48 APT55_RS25980 PF00076 RNA recognition motif APT55_RS25995 PF01103 Surface antigen APT55_RS25995 PF08479 POTRA domain, ShlB-type APT55_RS26000 PF13358 DDE superfamily endonuclease APT55_RS26005 PF00292 'Paired box' domain APT55_RS26015 PF04255 Protein of unknown function (DUF433) APT55_RS26025 PF04452 RNA methyltransferase APT55_RS26030 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS26035 PF05360 APT55_RS26035 APT55_RS26040 PF00498 FHA domain APT55_RS26040 PF00905 Penicillin binding protein transpeptidase domain APT55_RS26040 PF00912 Transglycosylase APT55_RS26050 PF04115 Ureidoglycolate hydrolase APT55_RS26060 PF00814 Glycoprotease family APT55_RS26065 PF12159 APT55_RS26065 APT55_RS26070 PF10693 APT55_RS26070 APT55_RS26075 PF05685 Putative restriction endonuclease APT55_RS26080 PF04230 APT55_RS26080 APT55_RS26085 PF00342 Phosphoglucose isomerase APT55_RS26090 PF01435 Peptidase family M48 APT55_RS26095 PF06206 CpeT/CpcT family (DUF1001) APT55_RS26100 PF01047 MarR family APT55_RS26105 PF00528 Binding-protein-dependent transport system inner membrane component APT55_RS26110 PF08241 Methyltransferase domain APT55_RS26115 PF00534 Glycosyl transferases group 1 APT55_RS26120 PF00759 Glycosyl hydrolase family 9 APT55_RS26120 PF02927 N-terminal ig-like domain of cellulase APT55_RS26125 PF13440 APT55_RS26125 APT55_RS26130 PF00210 Ferritin-like domain APT55_RS26135 PF02537 APT55_RS26135 APT55_RS26145 PF02567 Phenazine biosynthesis-like protein APT55_RS26150 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel APT55_RS26155 PF13545 Crp-like helix-turn-helix domain APT55_RS26160 PF00226 DnaJ domain APT55_RS26165 PF11341 APT55_RS26165 APT55_RS26170 PF00535 Glycosyl transferase family 2 APT55_RS26175 PF00258 Flavodoxin APT55_RS26175 PF01613 Flavin reductase like domain APT55_RS26180 PF00753 Metallo-beta-lactamase superfamily APT55_RS26180 PF01613 Flavin reductase like domain APT55_RS26185 PF03309 Type III pantothenate kinase APT55_RS26200 PF13302 Acetyltransferase (GNAT) domain APT55_RS26205 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase APT55_RS26205 PF03033 Glycosyltransferase family 28 N-terminal domain APT55_RS26210 PF00440 Bacterial regulatory proteins, tetR family APT55_RS26215 PF00891 O-methyltransferase APT55_RS26215 PF16864 APT55_RS26215 APT55_RS26220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT55_RS26225 PF03435 Saccharopine dehydrogenase APT55_RS26225 PF16653 APT55_RS26225 APT55_RS26235 PF00076 RNA recognition motif APT55_RS26240 PF00326 Prolyl oligopeptidase family APT55_RS26240 PF07676 WD40-like Beta Propeller Repeat APT55_RS26255 PF00270 DEAD/DEAH box helicase APT55_RS26255 PF00271 Helicase conserved C-terminal domain APT55_RS26260 PF01740 STAS domain APT55_RS26265 PF01218 Coproporphyrinogen III oxidase APT55_RS26275 PF01883 Domain of unknown function DUF59 APT55_RS26275 PF10609 ParA/MinD ATPase like APT55_RS26280 PF01098 APT55_RS26280 APT55_RS26285 PF11623 Protein of unknown function (DUF3252) APT55_RS26290 PF12697 Alpha/beta hydrolase family APT55_RS26295 PF01909 Nucleotidyltransferase domain APT55_RS26300 PF01934 Protein of unknown function DUF86 APT55_RS26305 PF00675 Insulinase (Peptidase family M16) APT55_RS26305 PF05193 Peptidase M16 inactive domain APT55_RS26310 PF00675 Insulinase (Peptidase family M16) APT55_RS26310 PF05193 Peptidase M16 inactive domain APT55_RS26320 PF02605 Photosystem I reaction centre subunit XI APT55_RS26325 PF00625 Guanylate kinase APT55_RS26330 PF04025 APT55_RS26330 APT55_RS26335 PF05670 APT55_RS26335 APT55_RS26335 PF05833 Fibronectin-binding protein A N-terminus (FbpA) APT55_RS26340 PF00793 DAHP synthetase I family APT55_RS26345 PF00924 Mechanosensitive ion channel APT55_RS26350 PF04014 Antidote-toxin recognition MazE APT55_RS26355 PF02452 PemK-like protein APT55_RS26360 PF05419 GUN4-like APT55_RS26360 PF13676 TIR domain APT55_RS26365 PF01909 Nucleotidyltransferase domain APT55_RS26370 PF01934 Protein of unknown function DUF86 APT55_RS26375 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APT55_RS26375 PF05221 S-adenosyl-L-homocysteine hydrolase APT55_RS26400 PF02366 APT55_RS26400 APT55_RS26400 PF16192 APT55_RS26400 APT55_RS26405 PF00072 Response regulator receiver domain APT55_RS26405 PF00196 Bacterial regulatory proteins, luxR family APT55_RS26415 PF00206 Lyase APT55_RS26415 PF14698 Argininosuccinate lyase C-terminal APT55_RS26420 PF00578 AhpC/TSA family APT55_RS26425 PF00293 NUDIX domain APT55_RS26430 PF01478 Type IV leader peptidase family APT55_RS26430 PF06750 APT55_RS26430 APT55_RS26445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT55_RS26445 PF01872 RibD C-terminal domain APT55_RS26455 PF04015 APT55_RS26455 APT55_RS26460 PF13847 Methyltransferase domain APT55_RS26465 PF13520 Amino acid permease APT55_RS26470 PF01471 Putative peptidoglycan binding domain APT55_RS26475 PF01475 Ferric uptake regulator family APT55_RS26480 PF00140 Sigma-70 factor, region 1 APT55_RS26480 PF04539 Sigma-70 region 3 APT55_RS26480 PF04542 Sigma-70 region 2 APT55_RS26480 PF04545 Sigma-70, region 4 APT55_RS26485 PF09848 Uncharacterized conserved protein (DUF2075) APT55_RS26490 PF13343 Bacterial extracellular solute-binding protein APT55_RS26505 PF04306 APT55_RS26505 APT55_RS26510 PF16734 APT55_RS26510 APT55_RS26515 PF01627 Hpt domain APT55_RS26520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS26520 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT55_RS26525 PF00534 Glycosyl transferases group 1 APT55_RS26525 PF13579 Glycosyl transferase 4-like domain APT55_RS26535 PF13416 Bacterial extracellular solute-binding protein APT55_RS26540 PF01618 APT55_RS26540 APT55_RS26545 PF02472 Biopolymer transport protein ExbD/TolR APT55_RS26550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT55_RS26550 PF03129 Anticodon binding domain APT55_RS26550 PF04073 Aminoacyl-tRNA editing domain APT55_RS26555 PF13673 Acetyltransferase (GNAT) domain APT55_RS26560 PF11209 APT55_RS26560 APT55_RS26565 PF10646 APT55_RS26565 APT55_RS26570 PF01022 Bacterial regulatory protein, arsR family APT55_RS26575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT55_RS26580 PF13641 Glycosyltransferase like family 2 APT55_RS26585 PF06314 Acetoacetate decarboxylase (ADC) APT55_RS26590 PF11209 APT55_RS26590 APT55_RS26595 PF00515 Tetratricopeptide repeat APT55_RS26595 PF13181 Tetratricopeptide repeat APT55_RS26595 PF13414 TPR repeat APT55_RS26600 PF00515 Tetratricopeptide repeat APT55_RS26600 PF07719 Tetratricopeptide repeat APT55_RS26600 PF13432 Tetratricopeptide repeat APT55_RS26605 PF00582 Universal stress protein family APT55_RS26620 PF05860 haemagglutination activity domain APT55_RS26625 PF05860 haemagglutination activity domain APT55_RS26630 PF05860 haemagglutination activity domain APT55_RS26640 PF05860 haemagglutination activity domain APT55_RS26645 PF00210 Ferritin-like domain APT55_RS26650 PF04055 Radical SAM superfamily APT55_RS26650 PF06969 HemN C-terminal domain APT55_RS26665 PF00459 Inositol monophosphatase family APT55_RS26670 PF00027 Cyclic nucleotide-binding domain APT55_RS26670 PF13545 Crp-like helix-turn-helix domain APT55_RS26675 PF05299 M61 glycyl aminopeptidase APT55_RS26675 PF13180 PDZ domain APT55_RS26680 PF00152 tRNA synthetases class II (D, K and N) APT55_RS26680 PF01336 OB-fold nucleic acid binding domain APT55_RS26685 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS26690 PF13628 APT55_RS26690 APT55_RS26695 PF01370 NAD dependent epimerase/dehydratase family APT55_RS26705 PF01593 Flavin containing amine oxidoreductase APT55_RS26710 PF13450 NAD(P)-binding Rossmann-like domain APT55_RS26715 PF10646 APT55_RS26715 APT55_RS26720 PF00072 Response regulator receiver domain APT55_RS26720 PF00486 Transcriptional regulatory protein, C terminal APT55_RS26720 PF00990 GGDEF domain APT55_RS26720 PF01627 Hpt domain APT55_RS26725 PF00011 Hsp20/alpha crystallin family APT55_RS26730 PF04073 Aminoacyl-tRNA editing domain APT55_RS26735 PF00535 Glycosyl transferase family 2 APT55_RS26740 PF00849 RNA pseudouridylate synthase APT55_RS26740 PF01479 S4 domain APT55_RS26745 PF01934 Protein of unknown function DUF86 APT55_RS26750 PF01909 Nucleotidyltransferase domain APT55_RS26755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS26760 PF01903 CbiX APT55_RS26775 PF01593 Flavin containing amine oxidoreductase APT55_RS26780 PF00494 Squalene/phytoene synthase APT55_RS26785 PF13529 Peptidase_C39 like family APT55_RS26790 PF00920 Dehydratase family APT55_RS26795 PF01926 50S ribosome-binding GTPase APT55_RS26800 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS26805 PF11139 APT55_RS26805 APT55_RS26810 PF05673 Protein of unknown function (DUF815) APT55_RS26825 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS26825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS26825 PF08447 PAS fold APT55_RS26825 PF08448 PAS fold APT55_RS26830 PF12849 PBP superfamily domain APT55_RS26830 PF16258 APT55_RS26830 APT55_RS26835 PF00484 Carbonic anhydrase APT55_RS26840 PF09084 NMT1/THI5 like APT55_RS26850 PF04020 APT55_RS26850 APT55_RS26855 PF00873 AcrB/AcrD/AcrF family APT55_RS26860 PF16576 APT55_RS26860 APT55_RS26865 PF00487 APT55_RS26865 APT55_RS26870 PF14218 APT55_RS26870 APT55_RS26885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT55_RS26900 PF00515 Tetratricopeptide repeat APT55_RS26900 PF13432 Tetratricopeptide repeat APT55_RS26905 PF00005 ABC transporter APT55_RS26910 PF02653 APT55_RS26910 APT55_RS26915 PF02653 APT55_RS26915 APT55_RS26920 PF13231 APT55_RS26920 APT55_RS26925 PF02152 Dihydroneopterin aldolase APT55_RS26935 PF05598 APT55_RS26935 APT55_RS26945 PF00148 Nitrogenase component 1 type Oxidoreductase APT55_RS26945 PF08369 Proto-chlorophyllide reductase 57 kD subunit APT55_RS26950 PF13177 DNA polymerase III, delta subunit APT55_RS26955 PF06039 APT55_RS26955 APT55_RS26960 PF13354 Beta-lactamase enzyme family APT55_RS26965 PF00588 SpoU rRNA Methylase family APT55_RS26970 PF10013 APT55_RS26970 APT55_RS26975 PF01112 Asparaginase APT55_RS26985 PF00155 Aminotransferase class I and II APT55_RS26990 PF01782 RimM N-terminal domain APT55_RS26990 PF05239 PRC-barrel domain APT55_RS27005 PF00924 Mechanosensitive ion channel APT55_RS27010 PF01609 Transposase DDE domain APT55_RS27025 PF13367 APT55_RS27025 APT55_RS27030 PF00561 alpha/beta hydrolase fold APT55_RS27030 PF08386 TAP-like protein APT55_RS27040 PF14516 APT55_RS27040 APT55_RS27045 PF00400 WD domain, G-beta repeat APT55_RS27045 PF08447 PAS fold APT55_RS27045 PF14516 APT55_RS27045 APT55_RS27060 PF00027 Cyclic nucleotide-binding domain APT55_RS27070 PF13692 Glycosyl transferases group 1 APT55_RS27075 PF10517 APT55_RS27075 APT55_RS27080 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS27080 PF01590 GAF domain APT55_RS27080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS27080 PF08447 PAS fold APT55_RS27085 PF00072 Response regulator receiver domain APT55_RS27085 PF00486 Transcriptional regulatory protein, C terminal APT55_RS27090 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS27090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS27115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT55_RS27115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT55_RS27120 PF02570 Precorrin-8X methylmutase APT55_RS27125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS27130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT55_RS27130 PF11760 Cobalamin synthesis G N-terminal APT55_RS27150 PF01850 PIN domain APT55_RS27160 PF13443 Cro/C1-type HTH DNA-binding domain APT55_RS27165 PF05685 Putative restriction endonuclease APT55_RS27170 PF00210 Ferritin-like domain APT55_RS27175 PF01593 Flavin containing amine oxidoreductase APT55_RS27180 PF05685 Putative restriction endonuclease APT55_RS27185 PF00931 NB-ARC domain APT55_RS27185 PF13374 Tetratricopeptide repeat APT55_RS27185 PF13424 Tetratricopeptide repeat APT55_RS27185 PF13676 TIR domain APT55_RS27195 PF02452 PemK-like protein APT55_RS27210 PF00067 Cytochrome P450 APT55_RS27215 PF00425 chorismate binding enzyme APT55_RS27220 PF05685 Putative restriction endonuclease APT55_RS27225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT55_RS27225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT55_RS27225 PF16582 APT55_RS27225 APT55_RS27230 PF00378 Enoyl-CoA hydratase/isomerase family APT55_RS27235 PF03747 ADP-ribosylglycohydrolase APT55_RS27240 PF08814 XisH protein APT55_RS27245 PF08869 XisI protein APT55_RS27250 PF00676 Dehydrogenase E1 component APT55_RS27255 PF00226 DnaJ domain APT55_RS27255 PF13355 APT55_RS27255 APT55_RS27260 PF03547 APT55_RS27260 APT55_RS27265 PF00072 Response regulator receiver domain APT55_RS27265 PF00486 Transcriptional regulatory protein, C terminal APT55_RS27270 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS27270 PF00989 PAS fold APT55_RS27270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS27275 PF00849 RNA pseudouridylate synthase APT55_RS27275 PF01479 S4 domain APT55_RS27280 PF13413 Helix-turn-helix domain APT55_RS27280 PF13464 APT55_RS27280 APT55_RS27285 PF01225 Mur ligase family, catalytic domain APT55_RS27285 PF02875 Mur ligase family, glutamate ligase domain APT55_RS27285 PF08245 Mur ligase middle domain APT55_RS27295 PF03699 APT55_RS27295 APT55_RS27305 PF03040 APT55_RS27305 APT55_RS27310 PF00140 Sigma-70 factor, region 1 APT55_RS27310 PF04539 Sigma-70 region 3 APT55_RS27310 PF04542 Sigma-70 region 2 APT55_RS27310 PF04545 Sigma-70, region 4 APT55_RS27315 PF02142 MGS-like domain APT55_RS27315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT55_RS27315 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT55_RS27325 PF01447 Thermolysin metallopeptidase, catalytic domain APT55_RS27325 PF02868 Thermolysin metallopeptidase, alpha-helical domain APT55_RS27335 PF13181 Tetratricopeptide repeat APT55_RS27335 PF13414 TPR repeat APT55_RS27340 PF04029 2-phosphosulpholactate phosphatase APT55_RS27350 PF05685 Putative restriction endonuclease APT55_RS27355 PF04055 Radical SAM superfamily APT55_RS27360 PF14221 APT55_RS27360 APT55_RS27365 PF01435 Peptidase family M48 APT55_RS27370 PF00149 Calcineurin-like phosphoesterase APT55_RS27375 PF09353 APT55_RS27375 APT55_RS27380 PF01116 Fructose-bisphosphate aldolase class-II APT55_RS27385 PF04107 Glutamate-cysteine ligase family 2(GCS2) APT55_RS27390 PF00395 S-layer homology domain APT55_RS27390 PF07602 APT55_RS27390 APT55_RS27395 PF11998 APT55_RS27395 APT55_RS27420 PF05598 APT55_RS27420 APT55_RS27440 PF00350 Dynamin family APT55_RS27470 PF00092 von Willebrand factor type A domain APT55_RS27480 PF00092 von Willebrand factor type A domain APT55_RS27485 PF00498 FHA domain APT55_RS27490 PF00481 Protein phosphatase 2C APT55_RS27495 PF00069 Protein kinase domain APT55_RS27495 PF13432 Tetratricopeptide repeat APT55_RS27500 PF00498 FHA domain APT55_RS27505 PF00069 Protein kinase domain APT55_RS27505 PF00481 Protein phosphatase 2C APT55_RS27510 PF00092 von Willebrand factor type A domain APT55_RS27515 PF00069 Protein kinase domain APT55_RS27515 PF00400 WD domain, G-beta repeat APT55_RS27520 PF00069 Protein kinase domain APT55_RS27520 PF13229 Right handed beta helix region APT55_RS27525 PF00069 Protein kinase domain APT55_RS27525 PF05048 Periplasmic copper-binding protein (NosD) APT55_RS27525 PF12708 Pectate lyase superfamily protein APT55_RS27525 PF13229 Right handed beta helix region APT55_RS27530 PF02861 Clp amino terminal domain APT55_RS27540 PF00498 FHA domain APT55_RS27540 PF12770 APT55_RS27540 APT55_RS27540 PF13191 AAA ATPase domain APT55_RS27540 PF13424 Tetratricopeptide repeat APT55_RS27545 PF01548 APT55_RS27545 APT55_RS27545 PF02371 APT55_RS27545 APT55_RS27580 PF13267 APT55_RS27580 APT55_RS27585 PF13911 AhpC/TSA antioxidant enzyme APT55_RS27590 PF01209 ubiE/COQ5 methyltransferase family APT55_RS27605 PF02653 APT55_RS27605 APT55_RS27610 PF00005 ABC transporter APT55_RS27615 PF02608 Basic membrane protein APT55_RS27620 PF11267 Protein of unknown function (DUF3067) APT55_RS27625 PF00355 Rieske [2Fe-2S] domain APT55_RS27625 PF08802 Cytochrome B6-F complex Fe-S subunit APT55_RS27630 PF01333 Apocytochrome F, C-terminal APT55_RS27630 PF16639 APT55_RS27630 APT55_RS27640 PF00390 Malic enzyme, N-terminal domain APT55_RS27640 PF01842 ACT domain APT55_RS27640 PF03949 Malic enzyme, NAD binding domain APT55_RS27645 PF07690 Major Facilitator Superfamily APT55_RS27650 PF03116 APT55_RS27650 APT55_RS27655 PF10092 APT55_RS27655 APT55_RS27665 PF13599 Pentapeptide repeats (9 copies) APT55_RS27675 PF00128 Alpha amylase, catalytic domain APT55_RS27675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT55_RS27680 PF01569 PAP2 superfamily APT55_RS27690 PF13358 DDE superfamily endonuclease APT55_RS27695 PF05685 Putative restriction endonuclease APT55_RS27700 PF05685 Putative restriction endonuclease APT55_RS27705 PF04012 APT55_RS27705 APT55_RS27710 PF01430 Hsp33 protein APT55_RS27715 PF01551 Peptidase family M23 APT55_RS27730 PF02678 Pirin APT55_RS27735 PF00072 Response regulator receiver domain APT55_RS27735 PF00196 Bacterial regulatory proteins, luxR family APT55_RS27745 PF01061 APT55_RS27745 APT55_RS27750 PF00005 ABC transporter APT55_RS27750 PF14524 Wzt C-terminal domain APT55_RS27755 PF13578 Methyltransferase domain APT55_RS27770 PF00535 Glycosyl transferase family 2 APT55_RS27775 PF01501 Glycosyl transferase family 8 APT55_RS27780 PF00571 CBS domain APT55_RS27780 PF01380 SIS domain APT55_RS27785 PF03062 APT55_RS27785 APT55_RS27795 PF02348 Cytidylyltransferase APT55_RS27800 PF13524 Glycosyl transferases group 1 APT55_RS27805 PF00353 Hemolysin-type calcium-binding repeat (2 copies) APT55_RS27805 PF07691 PA14 domain APT55_RS27805 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS27810 PF00793 DAHP synthetase I family APT55_RS27815 PF08282 haloacid dehalogenase-like hydrolase APT55_RS27825 PF08241 Methyltransferase domain APT55_RS27830 PF00535 Glycosyl transferase family 2 APT55_RS27835 PF00535 Glycosyl transferase family 2 APT55_RS27840 PF00534 Glycosyl transferases group 1 APT55_RS27840 PF13439 Glycosyltransferase Family 4 APT55_RS27850 PF00535 Glycosyl transferase family 2 APT55_RS27855 PF00534 Glycosyl transferases group 1 APT55_RS27870 PF01370 NAD dependent epimerase/dehydratase family APT55_RS27875 PF00534 Glycosyl transferases group 1 APT55_RS27880 PF04932 APT55_RS27880 APT55_RS27885 PF00534 Glycosyl transferases group 1 APT55_RS27890 PF00534 Glycosyl transferases group 1 APT55_RS27890 PF13439 Glycosyltransferase Family 4 APT55_RS27895 PF00534 Glycosyl transferases group 1 APT55_RS27905 PF00535 Glycosyl transferase family 2 APT55_RS27910 PF02698 DUF218 domain APT55_RS27915 PF13472 GDSL-like Lipase/Acylhydrolase family APT55_RS27920 PF05050 Methyltransferase FkbM domain APT55_RS27935 PF00535 Glycosyl transferase family 2 APT55_RS27940 PF01370 NAD dependent epimerase/dehydratase family APT55_RS27945 PF00953 Glycosyl transferase family 4 APT55_RS27950 PF00072 Response regulator receiver domain APT55_RS27960 PF00535 Glycosyl transferase family 2 APT55_RS27965 PF00132 Bacterial transferase hexapeptide (six repeats) APT55_RS27970 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS27970 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APT55_RS27975 PF00171 Aldehyde dehydrogenase family APT55_RS27980 PF00288 GHMP kinases N terminal domain APT55_RS27980 PF08544 GHMP kinases C terminal APT55_RS27980 PF10509 Galactokinase galactose-binding signature APT55_RS27985 PF00557 Metallopeptidase family M24 APT55_RS27990 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain APT55_RS27990 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain APT55_RS27995 PF01370 NAD dependent epimerase/dehydratase family APT55_RS28000 PF03275 UDP-galactopyranose mutase APT55_RS28000 PF13450 NAD(P)-binding Rossmann-like domain APT55_RS28005 PF13692 Glycosyl transferases group 1 APT55_RS28010 PF00703 Glycosyl hydrolases family 2 APT55_RS28010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APT55_RS28010 PF02837 Glycosyl hydrolases family 2, sugar binding domain APT55_RS28015 PF01232 Mannitol dehydrogenase Rossmann domain APT55_RS28015 PF08125 Mannitol dehydrogenase C-terminal domain APT55_RS28020 PF13419 Haloacid dehalogenase-like hydrolase APT55_RS28025 PF13641 Glycosyltransferase like family 2 APT55_RS28030 PF00375 Sodium:dicarboxylate symporter family APT55_RS28035 PF01292 Prokaryotic cytochrome b561 APT55_RS28040 PF00174 Oxidoreductase molybdopterin binding domain APT55_RS28045 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28045 PF10069 APT55_RS28045 APT55_RS28055 PF13424 Tetratricopeptide repeat APT55_RS28060 PF12697 Alpha/beta hydrolase family APT55_RS28075 PF14690 APT55_RS28075 APT55_RS28085 PF10017 APT55_RS28085 APT55_RS28090 PF10989 APT55_RS28090 APT55_RS28110 PF04326 Divergent AAA domain APT55_RS28115 PF10989 APT55_RS28115 APT55_RS28120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS28125 PF03781 Sulfatase-modifying factor enzyme 1 APT55_RS28125 PF12867 DinB superfamily APT55_RS28130 PF00230 Major intrinsic protein APT55_RS28135 PF04224 APT55_RS28135 APT55_RS28140 PF00732 GMC oxidoreductase APT55_RS28140 PF05199 GMC oxidoreductase APT55_RS28145 PF03358 NADPH-dependent FMN reductase APT55_RS28150 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS28155 PF00355 Rieske [2Fe-2S] domain APT55_RS28160 PF01641 SelR domain APT55_RS28165 PF00072 Response regulator receiver domain APT55_RS28165 PF00486 Transcriptional regulatory protein, C terminal APT55_RS28170 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28175 PF00174 Oxidoreductase molybdopterin binding domain APT55_RS28175 PF10518 TAT (twin-arginine translocation) pathway signal sequence APT55_RS28180 PF01292 Prokaryotic cytochrome b561 APT55_RS28185 PF02683 APT55_RS28185 APT55_RS28190 PF00578 AhpC/TSA family APT55_RS28200 PF03551 Transcriptional regulator PadR-like family APT55_RS28205 PF01791 DeoC/LacD family aldolase APT55_RS28210 PF00316 Fructose-1-6-bisphosphatase APT55_RS28215 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APT55_RS28215 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APT55_RS28220 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT55_RS28220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT55_RS28225 PF00342 Phosphoglucose isomerase APT55_RS28225 PF00923 Transaldolase APT55_RS28230 PF02685 Glucokinase APT55_RS28240 PF02685 Glucokinase APT55_RS28245 PF01625 Peptide methionine sulfoxide reductase APT55_RS28255 PF06778 Chlorite dismutase APT55_RS28260 PF00583 Acetyltransferase (GNAT) family APT55_RS28265 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28265 PF13185 GAF domain APT55_RS28270 PF13462 Thioredoxin APT55_RS28275 PF00106 short chain dehydrogenase APT55_RS28285 PF11026 APT55_RS28285 APT55_RS28290 PF00072 Response regulator receiver domain APT55_RS28290 PF00196 Bacterial regulatory proteins, luxR family APT55_RS28295 PF01590 GAF domain APT55_RS28295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28295 PF07730 Histidine kinase APT55_RS28305 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT55_RS28310 PF00072 Response regulator receiver domain APT55_RS28320 PF01609 Transposase DDE domain APT55_RS28330 PF00892 EamA-like transporter family APT55_RS28350 PF07238 PilZ domain APT55_RS28350 PF13641 Glycosyltransferase like family 2 APT55_RS28355 PF00072 Response regulator receiver domain APT55_RS28355 PF00486 Transcriptional regulatory protein, C terminal APT55_RS28360 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28365 PF00027 Cyclic nucleotide-binding domain APT55_RS28365 PF13545 Crp-like helix-turn-helix domain APT55_RS28370 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28370 PF01590 GAF domain APT55_RS28370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28380 PF00801 PKD domain APT55_RS28390 PF00817 impB/mucB/samB family APT55_RS28390 PF11799 impB/mucB/samB family C-terminal domain APT55_RS28395 PF14516 APT55_RS28395 APT55_RS28400 PF00400 WD domain, G-beta repeat APT55_RS28400 PF14516 APT55_RS28400 APT55_RS28405 PF00583 Acetyltransferase (GNAT) family APT55_RS28415 PF14252 APT55_RS28415 APT55_RS28450 PF00059 Lectin C-type domain APT55_RS28465 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella APT55_RS28470 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella APT55_RS28485 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella APT55_RS28490 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella APT55_RS28510 PF10706 Aminoglycoside-2''-adenylyltransferase APT55_RS28515 PF10706 Aminoglycoside-2''-adenylyltransferase APT55_RS28520 PF07739 TipAS antibiotic-recognition domain APT55_RS28520 PF13411 MerR HTH family regulatory protein APT55_RS28525 PF00989 PAS fold APT55_RS28525 PF01590 GAF domain APT55_RS28525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28525 PF07730 Histidine kinase APT55_RS28525 PF08448 PAS fold APT55_RS28525 PF13426 PAS domain APT55_RS28530 PF00072 Response regulator receiver domain APT55_RS28530 PF00196 Bacterial regulatory proteins, luxR family APT55_RS28535 PF05719 Golgi phosphoprotein 3 (GPP34) APT55_RS28540 PF13462 Thioredoxin APT55_RS28545 PF01471 Putative peptidoglycan binding domain APT55_RS28555 PF02517 CAAX protease self-immunity APT55_RS28560 PF02517 CAAX protease self-immunity APT55_RS28565 PF02517 CAAX protease self-immunity APT55_RS28570 PF01944 APT55_RS28570 APT55_RS28585 PF01042 Endoribonuclease L-PSP APT55_RS28595 PF13561 Enoyl-(Acyl carrier protein) reductase APT55_RS28605 PF03400 APT55_RS28605 APT55_RS28610 PF03811 APT55_RS28610 APT55_RS28620 PF07452 APT55_RS28620 APT55_RS28630 PF00082 Subtilase family APT55_RS28640 PF13431 Tetratricopeptide repeat APT55_RS28650 PF00072 Response regulator receiver domain APT55_RS28660 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28660 PF01590 GAF domain APT55_RS28660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28670 PF00665 Integrase core domain APT55_RS28675 PF01695 IstB-like ATP binding protein APT55_RS28685 PF03372 Endonuclease/Exonuclease/phosphatase family APT55_RS28720 PF08279 HTH domain APT55_RS28720 PF13280 APT55_RS28720 APT55_RS28725 PF01872 RibD C-terminal domain APT55_RS28730 PF02525 Flavodoxin-like fold APT55_RS28735 PF08592 APT55_RS28735 APT55_RS28740 PF06475 Putative glycolipid-binding APT55_RS28750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS28755 PF13302 Acetyltransferase (GNAT) domain APT55_RS28760 PF01965 DJ-1/PfpI family APT55_RS28765 PF00144 Beta-lactamase APT55_RS28775 PF07617 APT55_RS28775 APT55_RS28780 PF05988 APT55_RS28780 APT55_RS28785 PF06983 3-demethylubiquinone-9 3-methyltransferase APT55_RS28790 PF03795 YCII-related domain APT55_RS28795 PF04542 Sigma-70 region 2 APT55_RS28795 PF08281 Sigma-70, region 4 APT55_RS28805 PF01223 DNA/RNA non-specific endonuclease APT55_RS28820 PF07884 Vitamin K epoxide reductase family APT55_RS28825 PF02540 NAD synthase APT55_RS28830 PF02672 CP12 domain APT55_RS28835 PF13612 APT55_RS28835 APT55_RS28840 PF08495 APT55_RS28840 APT55_RS28840 PF10442 APT55_RS28840 APT55_RS28845 PF02390 Putative methyltransferase APT55_RS28855 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28855 PF01590 GAF domain APT55_RS28855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28860 PF00072 Response regulator receiver domain APT55_RS28865 PF00072 Response regulator receiver domain APT55_RS28865 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28865 PF13426 PAS domain APT55_RS28870 PF00072 Response regulator receiver domain APT55_RS28870 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS28870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS28870 PF05231 APT55_RS28870 APT55_RS28875 PF03632 Glycosyl hydrolase family 65 central catalytic domain APT55_RS28875 PF03633 Glycosyl hydrolase family 65, C-terminal domain APT55_RS28875 PF03636 Glycosyl hydrolase family 65, N-terminal domain APT55_RS28880 PF00211 Adenylate and Guanylate cyclase catalytic domain APT55_RS28880 PF11845 APT55_RS28880 APT55_RS28885 PF00400 WD domain, G-beta repeat APT55_RS28885 PF00931 NB-ARC domain APT55_RS28890 PF02310 B12 binding domain APT55_RS28890 PF04055 Radical SAM superfamily APT55_RS28890 PF13282 APT55_RS28890 APT55_RS28900 PF01381 Helix-turn-helix APT55_RS28905 PF05973 APT55_RS28905 APT55_RS28920 PF00491 Arginase family APT55_RS28925 PF00133 tRNA synthetases class I (I, L, M and V) APT55_RS28925 PF08264 Anticodon-binding domain of tRNA APT55_RS28925 PF13603 Leucyl-tRNA synthetase, Domain 2 APT55_RS28930 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family APT55_RS28950 PF08974 Domain of unknown function (DUF1877) APT55_RS28955 PF00355 Rieske [2Fe-2S] domain APT55_RS28960 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS28965 PF00085 Thioredoxin APT55_RS28970 PF03641 Possible lysine decarboxylase APT55_RS28975 PF13649 Methyltransferase domain APT55_RS28980 PF07690 Major Facilitator Superfamily APT55_RS28985 PF01019 Gamma-glutamyltranspeptidase APT55_RS28990 PF02669 APT55_RS28990 APT55_RS28995 PF09604 APT55_RS28995 APT55_RS29000 PF00122 E1-E2 ATPase APT55_RS29000 PF00702 haloacid dehalogenase-like hydrolase APT55_RS29005 PF03814 APT55_RS29005 APT55_RS29010 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS29010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS29015 PF00072 Response regulator receiver domain APT55_RS29015 PF00196 Bacterial regulatory proteins, luxR family APT55_RS29020 PF03186 APT55_RS29020 APT55_RS29025 PF12804 MobA-like NTP transferase domain APT55_RS29040 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS29040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS29045 PF00072 Response regulator receiver domain APT55_RS29045 PF00486 Transcriptional regulatory protein, C terminal APT55_RS29050 PF01370 NAD dependent epimerase/dehydratase family APT55_RS29055 PF13545 Crp-like helix-turn-helix domain APT55_RS29060 PF13531 Bacterial extracellular solute-binding protein APT55_RS29065 PF00291 Pyridoxal-phosphate dependent enzyme APT55_RS29070 PF13319 APT55_RS29070 APT55_RS29085 PF03160 Calx-beta domain APT55_RS29085 PF07676 WD40-like Beta Propeller Repeat APT55_RS29085 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella APT55_RS29085 PF14252 APT55_RS29085 APT55_RS29090 PF00124 Photosynthetic reaction centre protein APT55_RS29095 PF13565 APT55_RS29095 APT55_RS29105 PF01636 Phosphotransferase enzyme family APT55_RS29110 PF04960 Glutaminase APT55_RS29115 PF00933 Glycosyl hydrolase family 3 N terminal domain APT55_RS29120 PF00850 Histone deacetylase domain APT55_RS29130 PF09876 APT55_RS29130 APT55_RS29135 PF02617 ATP-dependent Clp protease adaptor protein ClpS APT55_RS29140 PF14014 APT55_RS29140 APT55_RS29150 PF04055 Radical SAM superfamily APT55_RS29150 PF13394 4Fe-4S single cluster domain APT55_RS29155 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS29155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS29155 PF08448 PAS fold APT55_RS29155 PF13426 PAS domain APT55_RS29160 PF00795 Carbon-nitrogen hydrolase APT55_RS29165 PF00857 Isochorismatase family APT55_RS29170 PF02608 Basic membrane protein APT55_RS29175 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS29190 PF00069 Protein kinase domain APT55_RS29195 PF02557 D-alanyl-D-alanine carboxypeptidase APT55_RS29200 PF00069 Protein kinase domain APT55_RS29210 PF01208 Uroporphyrinogen decarboxylase (URO-D) APT55_RS29215 PF01370 NAD dependent epimerase/dehydratase family APT55_RS29220 PF05115 Cytochrome B6-F complex subunit VI (PetL) APT55_RS29225 PF00270 DEAD/DEAH box helicase APT55_RS29225 PF00271 Helicase conserved C-terminal domain APT55_RS29225 PF08148 DSHCT (NUC185) domain APT55_RS29290 PF12836 Helix-hairpin-helix motif APT55_RS29315 PF07498 Rho termination factor, N-terminal domain APT55_RS29320 PF00226 DnaJ domain APT55_RS29320 PF07498 Rho termination factor, N-terminal domain APT55_RS29325 PF03237 Terminase-like family APT55_RS29345 PF01381 Helix-turn-helix APT55_RS29375 PF01555 DNA methylase APT55_RS29385 PF00589 Phage integrase family APT55_RS29385 PF02899 Phage integrase, N-terminal SAM-like domain APT55_RS29405 PF00216 Bacterial DNA-binding protein APT55_RS29490 PF00535 Glycosyl transferase family 2 APT55_RS29520 PF00589 Phage integrase family APT55_RS29530 PF12728 Helix-turn-helix domain APT55_RS29535 PF11753 APT55_RS29535 APT55_RS29540 PF13532 2OG-Fe(II) oxygenase superfamily APT55_RS29600 PF00145 C-5 cytosine-specific DNA methylase APT55_RS29610 PF10929 APT55_RS29610 APT55_RS29640 PF04098 Rad52/22 family double-strand break repair protein APT55_RS29660 PF01381 Helix-turn-helix APT55_RS29670 PF13614 AAA domain APT55_RS29675 PF05685 Putative restriction endonuclease APT55_RS29730 PF00990 GGDEF domain APT55_RS29775 PF13610 APT55_RS29775 APT55_RS29780 PF00589 Phage integrase family APT55_RS29780 PF02899 Phage integrase, N-terminal SAM-like domain APT55_RS29795 PF05685 Putative restriction endonuclease APT55_RS29800 PF01609 Transposase DDE domain APT55_RS29815 PF13175 AAA ATPase domain APT55_RS29825 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS29840 PF07728 AAA domain (dynein-related subfamily) APT55_RS29845 PF10117 APT55_RS29845 APT55_RS29865 PF00069 Protein kinase domain APT55_RS29880 PF05345 Putative Ig domain APT55_RS29880 PF05593 APT55_RS29880 APT55_RS29915 PF14040 APT55_RS29915 APT55_RS29935 PF00589 Phage integrase family APT55_RS29935 PF02899 Phage integrase, N-terminal SAM-like domain APT55_RS29940 PF00639 PPIC-type PPIASE domain APT55_RS29945 PF00005 ABC transporter APT55_RS29945 PF00027 Cyclic nucleotide-binding domain APT55_RS29945 PF00664 ABC transporter transmembrane region APT55_RS29945 PF03412 Peptidase C39 family APT55_RS29950 PF13437 HlyD family secretion protein APT55_RS29950 PF13533 Biotin-lipoyl like APT55_RS29955 PF13546 APT55_RS29955 APT55_RS29985 PF12850 Calcineurin-like phosphoesterase superfamily domain APT55_RS29990 PF13177 DNA polymerase III, delta subunit APT55_RS29995 PF13177 DNA polymerase III, delta subunit APT55_RS30010 PF04851 Type III restriction enzyme, res subunit APT55_RS30015 PF00712 DNA polymerase III beta subunit, N-terminal domain APT55_RS30015 PF02767 DNA polymerase III beta subunit, central domain APT55_RS30015 PF02768 DNA polymerase III beta subunit, C-terminal domain APT55_RS30020 PF00140 Sigma-70 factor, region 1 APT55_RS30020 PF04539 Sigma-70 region 3 APT55_RS30020 PF04542 Sigma-70 region 2 APT55_RS30020 PF04545 Sigma-70, region 4 APT55_RS30040 PF14460 APT55_RS30040 APT55_RS30050 PF00899 ThiF family APT55_RS30055 PF06144 DNA polymerase III, delta subunit APT55_RS30065 PF01797 Transposase IS200 like APT55_RS30075 PF01661 Macro domain APT55_RS30085 PF14239 APT55_RS30085 APT55_RS30090 PF06868 APT55_RS30090 APT55_RS30095 PF11211 APT55_RS30095 APT55_RS30100 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS30105 PF10718 APT55_RS30105 APT55_RS30110 PF05406 WGR domain APT55_RS30115 PF01381 Helix-turn-helix APT55_RS30120 PF00176 SNF2 family N-terminal domain APT55_RS30120 PF00271 Helicase conserved C-terminal domain APT55_RS30125 PF01850 PIN domain APT55_RS30135 PF02086 D12 class N6 adenine-specific DNA methyltransferase APT55_RS30135 PF06634 APT55_RS30135 APT55_RS30140 PF00004 ATPase family associated with various cellular activities (AAA) APT55_RS30145 PF00082 Subtilase family APT55_RS30170 PF04465 APT55_RS30170 APT55_RS30175 PF06250 APT55_RS30175 APT55_RS30185 PF11535 Calcium binding APT55_RS30200 PF12680 SnoaL-like domain APT55_RS30205 PF07883 Cupin domain APT55_RS30210 PF12802 MarR family APT55_RS30245 PF07617 APT55_RS30245 APT55_RS30250 PF06983 3-demethylubiquinone-9 3-methyltransferase APT55_RS30260 PF06983 3-demethylubiquinone-9 3-methyltransferase APT55_RS30265 PF03795 YCII-related domain APT55_RS30270 PF04542 Sigma-70 region 2 APT55_RS30270 PF08281 Sigma-70, region 4 APT55_RS30275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT55_RS30280 PF07883 Cupin domain APT55_RS30285 PF12833 Helix-turn-helix domain APT55_RS30295 PF12120 Rifampin ADP-ribosyl transferase APT55_RS30305 PF08592 APT55_RS30305 APT55_RS30310 PF00043 Glutathione S-transferase, C-terminal domain APT55_RS30310 PF13417 Glutathione S-transferase, N-terminal domain APT55_RS30315 PF12833 Helix-turn-helix domain APT55_RS30320 PF01124 MAPEG family APT55_RS30325 PF14534 Domain of unknown function (DUF4440) APT55_RS30335 PF13649 Methyltransferase domain APT55_RS30340 PF00583 Acetyltransferase (GNAT) family APT55_RS30350 PF03193 Protein of unknown function, DUF258 APT55_RS30355 PF01209 ubiE/COQ5 methyltransferase family APT55_RS30365 PF00583 Acetyltransferase (GNAT) family APT55_RS30385 PF08751 TrwC relaxase APT55_RS30415 PF02534 Type IV secretory system Conjugative DNA transfer APT55_RS30430 PF00182 Chitinase class I APT55_RS30440 PF03743 Bacterial conjugation TrbI-like protein APT55_RS30475 PF03575 Peptidase family S51 APT55_RS30490 PF13443 Cro/C1-type HTH DNA-binding domain APT55_RS30505 PF08869 XisI protein APT55_RS30510 PF08814 XisH protein APT55_RS30515 PF08814 XisH protein APT55_RS30530 PF00639 PPIC-type PPIASE domain APT55_RS30535 PF00005 ABC transporter APT55_RS30535 PF00027 Cyclic nucleotide-binding domain APT55_RS30535 PF00664 ABC transporter transmembrane region APT55_RS30540 PF13437 HlyD family secretion protein APT55_RS30540 PF13533 Biotin-lipoyl like APT55_RS30545 PF08852 APT55_RS30545 APT55_RS30550 PF00111 2Fe-2S iron-sulfur cluster binding domain APT55_RS30550 PF00175 Oxidoreductase NAD-binding domain APT55_RS30550 PF00498 FHA domain APT55_RS30550 PF00970 Oxidoreductase FAD-binding domain APT55_RS30560 PF00069 Protein kinase domain APT55_RS30560 PF13360 PQQ-like domain APT55_RS30620 PF08447 PAS fold APT55_RS30620 PF08448 PAS fold APT55_RS30620 PF13426 PAS domain APT55_RS30625 PF00067 Cytochrome P450 APT55_RS30630 PF05860 haemagglutination activity domain APT55_RS30635 PF01103 Surface antigen APT55_RS30635 PF08479 POTRA domain, ShlB-type APT55_RS30640 PF12770 APT55_RS30640 APT55_RS30650 PF00069 Protein kinase domain APT55_RS30650 PF13414 TPR repeat APT55_RS30650 PF13424 Tetratricopeptide repeat APT55_RS30655 PF00931 NB-ARC domain APT55_RS30665 PF03400 APT55_RS30665 APT55_RS30665 PF11427 Tc3 transposase APT55_RS30670 PF00665 Integrase core domain APT55_RS30675 PF01695 IstB-like ATP binding protein APT55_RS30675 PF08483 APT55_RS30675 APT55_RS30680 PF01610 APT55_RS30680 APT55_RS30680 PF02796 Helix-turn-helix domain of resolvase APT55_RS30680 PF14690 APT55_RS30680 APT55_RS30690 PF00593 TonB dependent receptor APT55_RS30690 PF07715 TonB-dependent Receptor Plug Domain APT55_RS30690 PF11741 AMIN domain APT55_RS30695 PF01804 Penicillin amidase APT55_RS30700 PF00975 Thioesterase domain APT55_RS30705 PF00501 AMP-binding enzyme APT55_RS30705 PF00550 Phosphopantetheine attachment site APT55_RS30705 PF00668 Condensation domain APT55_RS30705 PF00975 Thioesterase domain APT55_RS30705 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30710 PF00501 AMP-binding enzyme APT55_RS30710 PF00550 Phosphopantetheine attachment site APT55_RS30710 PF00668 Condensation domain APT55_RS30710 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT55_RS30710 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30710 PF13745 HxxPF-repeated domain APT55_RS30715 PF00501 AMP-binding enzyme APT55_RS30715 PF00550 Phosphopantetheine attachment site APT55_RS30715 PF00668 Condensation domain APT55_RS30715 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30720 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT55_RS30725 PF00501 AMP-binding enzyme APT55_RS30725 PF00550 Phosphopantetheine attachment site APT55_RS30725 PF00668 Condensation domain APT55_RS30725 PF08242 Methyltransferase domain APT55_RS30725 PF13745 HxxPF-repeated domain APT55_RS30730 PF00501 AMP-binding enzyme APT55_RS30730 PF00550 Phosphopantetheine attachment site APT55_RS30730 PF00668 Condensation domain APT55_RS30730 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30730 PF13745 HxxPF-repeated domain APT55_RS30735 PF00501 AMP-binding enzyme APT55_RS30735 PF00550 Phosphopantetheine attachment site APT55_RS30735 PF00668 Condensation domain APT55_RS30735 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30735 PF13745 HxxPF-repeated domain APT55_RS30740 PF00109 Beta-ketoacyl synthase, N-terminal domain APT55_RS30740 PF00550 Phosphopantetheine attachment site APT55_RS30740 PF00698 Acyl transferase domain APT55_RS30740 PF02801 Beta-ketoacyl synthase, C-terminal domain APT55_RS30740 PF08659 KR domain APT55_RS30740 PF16197 APT55_RS30740 APT55_RS30745 PF00501 AMP-binding enzyme APT55_RS30745 PF00550 Phosphopantetheine attachment site APT55_RS30745 PF00668 Condensation domain APT55_RS30745 PF13193 AMP-binding enzyme C-terminal domain APT55_RS30745 PF13745 HxxPF-repeated domain APT55_RS30750 PF07690 Major Facilitator Superfamily APT55_RS30755 PF06999 APT55_RS30755 APT55_RS30760 PF01497 Periplasmic binding protein APT55_RS30770 PF00210 Ferritin-like domain APT55_RS30775 PF07845 APT55_RS30775 APT55_RS30780 PF01032 FecCD transport family APT55_RS30785 PF01032 FecCD transport family APT55_RS30790 PF00005 ABC transporter APT55_RS30795 PF03649 APT55_RS30795 APT55_RS30815 PF00593 TonB dependent receptor APT55_RS30815 PF07715 TonB-dependent Receptor Plug Domain APT55_RS30820 PF01797 Transposase IS200 like APT55_RS30825 PF00665 Integrase core domain APT55_RS30835 PF13359 APT55_RS30835 APT55_RS30840 PF00072 Response regulator receiver domain APT55_RS30840 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30850 PF13359 APT55_RS30850 APT55_RS30850 PF13613 APT55_RS30850 APT55_RS30855 PF00072 Response regulator receiver domain APT55_RS30865 PF00072 Response regulator receiver domain APT55_RS30865 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30865 PF08447 PAS fold APT55_RS30865 PF08448 PAS fold APT55_RS30870 PF00072 Response regulator receiver domain APT55_RS30870 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30870 PF08447 PAS fold APT55_RS30870 PF13426 PAS domain APT55_RS30870 PF13493 Domain of unknown function (DUF4118) APT55_RS30875 PF00072 Response regulator receiver domain APT55_RS30875 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30875 PF00989 PAS fold APT55_RS30875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30875 PF08447 PAS fold APT55_RS30875 PF13426 PAS domain APT55_RS30880 PF00072 Response regulator receiver domain APT55_RS30880 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30880 PF01590 GAF domain APT55_RS30880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30880 PF08448 PAS fold APT55_RS30880 PF13426 PAS domain APT55_RS30885 PF05227 CHASE3 domain APT55_RS30895 PF13586 APT55_RS30895 APT55_RS30900 PF00239 Resolvase, N terminal domain APT55_RS30900 PF07508 Recombinase APT55_RS30900 PF13408 Recombinase zinc beta ribbon domain APT55_RS30905 PF01609 Transposase DDE domain APT55_RS30905 PF13340 APT55_RS30905 APT55_RS30915 PF00069 Protein kinase domain APT55_RS30915 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30915 PF13191 AAA ATPase domain APT55_RS30915 PF13492 GAF domain APT55_RS30920 PF00355 Rieske [2Fe-2S] domain APT55_RS30925 PF02653 APT55_RS30925 APT55_RS30930 PF02653 APT55_RS30930 APT55_RS30935 PF00005 ABC transporter APT55_RS30940 PF02608 Basic membrane protein APT55_RS30950 PF00072 Response regulator receiver domain APT55_RS30950 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30950 PF01590 GAF domain APT55_RS30950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30950 PF08448 PAS fold APT55_RS30950 PF13185 GAF domain APT55_RS30950 PF13426 PAS domain APT55_RS30955 PF00069 Protein kinase domain APT55_RS30955 PF00072 Response regulator receiver domain APT55_RS30955 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30955 PF08447 PAS fold APT55_RS30955 PF13185 GAF domain APT55_RS30955 PF13191 AAA ATPase domain APT55_RS30960 PF00072 Response regulator receiver domain APT55_RS30960 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30960 PF08447 PAS fold APT55_RS30960 PF08448 PAS fold APT55_RS30960 PF13426 PAS domain APT55_RS30965 PF00072 Response regulator receiver domain APT55_RS30965 PF00512 His Kinase A (phospho-acceptor) domain APT55_RS30965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS30965 PF08447 PAS fold APT55_RS30965 PF08448 PAS fold APT55_RS30970 PF13546 APT55_RS30970 APT55_RS30975 PF13493 Domain of unknown function (DUF4118) APT55_RS30980 PF13610 APT55_RS30980 APT55_RS30990 PF00487 APT55_RS30990 APT55_RS31015 PF12696 TraM recognition site of TraD and TraG APT55_RS31025 PF16684 APT55_RS31025 APT55_RS31030 PF00805 Pentapeptide repeats (8 copies) APT55_RS31035 PF13546 APT55_RS31035 APT55_RS31075 PF02195 ParB-like nuclease domain APT55_RS31085 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT55_RS31090 PF02195 ParB-like nuclease domain APT55_RS31095 PF01381 Helix-turn-helix APT55_RS31105 PF13614 AAA domain APT55_RS31115 PF13612 APT55_RS31115 APT55_RS31125 PF04002 RadC-like JAB domain APT55_RS31130 PF02384 N-6 DNA Methylase APT55_RS31150 PF10412 Type IV secretion-system coupling protein DNA-binding domain APT55_RS31195 PF08751 TrwC relaxase APT55_RS31195 PF13604 AAA domain APT55_RS31215 PF04002 RadC-like JAB domain APT55_RS31235 PF03738 Glutathionylspermidine synthase preATP-grasp APT55_RS31240 PF06250 APT55_RS31240 APT55_RS31250 PF14281 APT55_RS31250 APT55_RS31260 PF03372 Endonuclease/Exonuclease/phosphatase family APT55_RS31270 PF01609 Transposase DDE domain APT55_RS31280 PF08378 APT55_RS31280 APT55_RS31280 PF13538 UvrD-like helicase C-terminal domain APT55_RS31290 PF01695 IstB-like ATP binding protein APT55_RS31295 PF00665 Integrase core domain APT55_RS31300 PF01695 IstB-like ATP binding protein APT55_RS31305 PF00665 Integrase core domain APT55_RS31310 PF00931 NB-ARC domain APT55_RS31325 PF01381 Helix-turn-helix APT55_RS31330 PF12965 APT55_RS31330 APT55_RS31345 PF03992 Antibiotic biosynthesis monooxygenase APT55_RS31350 PF02481 DNA recombination-mediator protein A APT55_RS31355 PF05685 Putative restriction endonuclease APT55_RS31365 PF05685 Putative restriction endonuclease APT55_RS31370 PF05419 GUN4-like APT55_RS31375 PF00565 Staphylococcal nuclease homologue APT55_RS31375 PF05901 APT55_RS31375 APT55_RS31380 PF13395 HNH endonuclease APT55_RS31390 PF01939 Protein of unknown function DUF91 APT55_RS31395 PF13280 APT55_RS31395 APT55_RS31400 PF12469 CRISPR-associated protein APT55_RS31405 PF09700 CRISPR-associated protein (Cas_Cmr3) APT55_RS31410 PF03787 RAMP superfamily APT55_RS31440 PF01867 CRISPR associated protein Cas1 APT55_RS31445 PF09827 CRISPR associated protein Cas2 APT55_RS31465 PF07878 APT55_RS31465 APT55_RS31485 PF00665 Integrase core domain APT55_RS31490 PF01695 IstB-like ATP binding protein APT55_RS31500 PF01471 Putative peptidoglycan binding domain APT55_RS31515 PF14516 APT55_RS31515 APT55_RS31520 PF00400 WD domain, G-beta repeat APT55_RS31520 PF14516 APT55_RS31520 APT55_RS31530 PF05908 Protein of unknown function (DUF867) APT55_RS31545 PF00400 WD domain, G-beta repeat APT55_RS31545 PF00805 Pentapeptide repeats (8 copies) APT55_RS31545 PF00931 NB-ARC domain APT55_RS31555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT55_RS31560 PF13560 Helix-turn-helix domain APT55_RS31565 PF14518 Iron-containing redox enzyme APT55_RS31570 PF05729 NACHT domain APT55_RS31585 PF01420 Type I restriction modification DNA specificity domain APT55_RS31615 PF01548 APT55_RS31615 APT55_RS31615 PF02371 APT55_RS31615 APT55_RS31630 PF00805 Pentapeptide repeats (8 copies) APT55_RS31660 PF16684 APT55_RS31660 APT55_RS31680 PF13560 Helix-turn-helix domain APT55_RS31715 PF13411 MerR HTH family regulatory protein APT55_RS31720 PF14168 APT55_RS31720 APT55_RS31725 PF04326 Divergent AAA domain APT55_RS31730 PF04326 Divergent AAA domain APT55_RS31735 PF13091 PLD-like domain APT55_RS31745 PF13614 AAA domain APT55_RS31795 PF05685 Putative restriction endonuclease APT55_RS31805 PF08706 APT55_RS31805 APT55_RS31825 PF02687 APT55_RS31825 APT55_RS31825 PF12704 MacB-like periplasmic core domain APT55_RS31830 PF16576 APT55_RS31830 APT55_RS31835 PF00196 Bacterial regulatory proteins, luxR family APT55_RS31840 PF00639 PPIC-type PPIASE domain APT55_RS31850 PF00005 ABC transporter APT55_RS31850 PF00027 Cyclic nucleotide-binding domain APT55_RS31850 PF00664 ABC transporter transmembrane region APT55_RS31850 PF03412 Peptidase C39 family APT55_RS31855 PF13437 HlyD family secretion protein APT55_RS31860 PF00005 ABC transporter APT55_RS31860 PF00664 ABC transporter transmembrane region APT55_RS31860 PF03412 Peptidase C39 family APT55_RS31865 PF03023 APT55_RS31865